Query 012080
Match_columns 471
No_of_seqs 131 out of 1162
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02764 glycosyltransferase f 100.0 8.2E-68 1.8E-72 521.4 46.4 449 10-469 1-452 (453)
2 PLN02208 glycosyltransferase f 100.0 4.4E-68 9.5E-73 526.4 44.5 436 13-463 3-440 (442)
3 PLN00414 glycosyltransferase f 100.0 1E-67 2.2E-72 524.4 45.4 439 13-466 3-444 (446)
4 PLN02670 transferase, transfer 100.0 5.9E-67 1.3E-71 519.5 45.0 450 12-465 4-468 (472)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 7.2E-65 1.6E-69 508.1 45.4 451 11-466 6-475 (477)
6 PLN02992 coniferyl-alcohol glu 100.0 1.1E-62 2.4E-67 489.3 43.2 433 14-463 5-470 (481)
7 PLN02534 UDP-glycosyltransfera 100.0 1.2E-62 2.6E-67 491.0 43.0 448 12-464 6-488 (491)
8 PLN03007 UDP-glucosyltransfera 100.0 2.9E-62 6.4E-67 493.6 43.4 445 11-463 2-481 (482)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.2E-61 2.7E-66 481.5 42.7 425 13-463 6-451 (451)
10 PLN02173 UDP-glucosyl transfer 100.0 1.2E-61 2.7E-66 479.3 41.8 415 11-461 2-447 (449)
11 PLN03015 UDP-glucosyl transfer 100.0 1.8E-61 3.8E-66 477.8 42.3 434 13-460 2-466 (470)
12 PLN02555 limonoid glucosyltran 100.0 2.6E-60 5.7E-65 473.6 42.7 433 13-463 6-470 (480)
13 PLN02210 UDP-glucosyl transfer 100.0 3.5E-60 7.7E-65 473.0 42.2 423 11-461 5-454 (456)
14 PLN00164 glucosyltransferase; 100.0 7.8E-60 1.7E-64 473.5 43.1 433 14-463 3-474 (480)
15 PLN02562 UDP-glycosyltransfera 100.0 6.5E-60 1.4E-64 470.7 41.8 420 14-460 6-447 (448)
16 PLN03004 UDP-glycosyltransfera 100.0 5.3E-60 1.1E-64 467.9 39.2 414 14-446 3-441 (451)
17 PLN02448 UDP-glycosyltransfera 100.0 1.6E-59 3.6E-64 471.3 43.1 429 10-462 6-457 (459)
18 PLN02207 UDP-glycosyltransfera 100.0 5.5E-59 1.2E-63 462.0 42.4 431 13-463 2-466 (468)
19 PLN02152 indole-3-acetate beta 100.0 3.8E-59 8.3E-64 462.3 40.7 416 14-460 3-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 3.5E-58 7.5E-63 463.4 40.6 429 14-463 2-479 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 5.6E-57 1.2E-61 453.9 40.5 435 13-463 2-473 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.2E-50 6.9E-55 406.6 34.5 399 13-460 19-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.8E-50 4E-55 415.2 11.1 393 16-463 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.3E-44 2.9E-49 360.4 28.7 385 20-460 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.4E-43 3.1E-48 354.5 25.0 379 15-456 1-398 (401)
26 COG1819 Glycosyl transferases, 100.0 1.3E-41 2.9E-46 335.0 22.6 392 14-460 1-399 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.8E-41 6.2E-46 347.2 21.2 419 14-460 5-453 (496)
28 PRK12446 undecaprenyldiphospho 100.0 3E-25 6.6E-30 216.1 31.7 319 14-438 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-24 2.4E-29 211.0 25.6 306 15-421 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 7.5E-23 1.6E-27 198.0 24.4 304 16-425 1-315 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.1E-20 4.4E-25 180.1 31.8 320 16-438 2-337 (357)
32 PRK00726 murG undecaprenyldiph 99.9 2.4E-19 5.3E-24 176.6 32.3 341 14-460 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 6E-18 1.3E-22 166.2 30.7 314 16-425 1-325 (350)
34 TIGR01133 murG undecaprenyldip 99.8 6.5E-16 1.4E-20 151.7 30.3 307 16-425 2-322 (348)
35 COG4671 Predicted glycosyl tra 99.8 1.9E-16 4.2E-21 145.3 23.5 341 11-425 6-366 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 5.3E-16 1.2E-20 153.4 23.7 350 15-458 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 1.6E-14 3.4E-19 143.6 26.9 144 273-436 201-349 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.7 1.9E-14 4E-19 143.1 24.0 344 15-459 2-374 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 4.2E-14 9.2E-19 133.5 22.4 104 275-390 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.6 2E-13 4.3E-18 135.8 23.3 164 273-460 201-369 (391)
41 PLN02605 monogalactosyldiacylg 99.5 3.5E-12 7.5E-17 126.7 24.4 81 334-424 265-347 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 3E-15 6.4E-20 130.7 -1.1 137 276-425 1-145 (167)
43 cd03814 GT1_like_2 This family 99.5 2.7E-10 5.9E-15 111.7 32.2 324 16-438 1-345 (364)
44 TIGR03492 conserved hypothetic 99.5 5.9E-11 1.3E-15 117.7 26.9 356 25-457 7-393 (396)
45 PF03033 Glyco_transf_28: Glyc 99.3 2.6E-12 5.6E-17 108.4 8.3 119 17-150 1-134 (139)
46 cd03823 GT1_ExpE7_like This fa 99.3 2.8E-09 6E-14 104.3 31.0 142 274-436 190-340 (359)
47 PLN02871 UDP-sulfoquinovose:DA 99.3 6E-09 1.3E-13 106.3 32.8 337 12-442 56-417 (465)
48 cd03817 GT1_UGDG_like This fam 99.3 5.4E-09 1.2E-13 102.6 29.9 341 16-444 1-362 (374)
49 cd03808 GT1_cap1E_like This fa 99.3 6.7E-09 1.5E-13 101.2 29.6 327 16-439 1-343 (359)
50 cd03800 GT1_Sucrose_synthase T 99.3 5.4E-09 1.2E-13 104.3 28.2 335 25-439 21-382 (398)
51 cd04962 GT1_like_5 This family 99.3 2.7E-08 5.8E-13 98.4 32.1 348 15-461 1-369 (371)
52 cd03816 GT1_ALG1_like This fam 99.2 1.7E-08 3.8E-13 101.3 30.8 349 13-440 2-399 (415)
53 cd03818 GT1_ExpC_like This fam 99.2 2.7E-08 5.8E-13 99.5 32.0 97 333-440 280-381 (396)
54 cd03794 GT1_wbuB_like This fam 99.2 2.1E-08 4.5E-13 99.0 30.6 149 274-441 219-381 (394)
55 cd03801 GT1_YqgM_like This fam 99.2 2.6E-08 5.5E-13 97.3 30.8 311 25-425 14-342 (374)
56 cd03798 GT1_wlbH_like This fam 99.2 8.9E-08 1.9E-12 93.7 32.0 315 24-425 13-345 (377)
57 cd03825 GT1_wcfI_like This fam 99.2 1.1E-07 2.4E-12 93.6 30.7 112 334-461 244-363 (365)
58 cd03820 GT1_amsD_like This fam 99.1 6.5E-08 1.4E-12 93.8 27.6 321 16-441 1-335 (348)
59 TIGR03449 mycothiol_MshA UDP-N 99.1 3.4E-07 7.4E-12 91.8 33.4 96 333-441 282-384 (405)
60 PRK05749 3-deoxy-D-manno-octul 99.1 4.8E-08 1E-12 98.6 26.7 88 345-443 314-406 (425)
61 TIGR00236 wecB UDP-N-acetylglu 99.1 2.6E-08 5.6E-13 98.4 23.4 341 16-462 2-363 (365)
62 cd03805 GT1_ALG2_like This fam 99.1 1.9E-07 4.1E-12 93.1 27.9 93 333-439 279-378 (392)
63 cd03819 GT1_WavL_like This fam 99.1 4.2E-07 9.2E-12 89.1 29.9 319 25-443 10-349 (355)
64 PF04007 DUF354: Protein of un 99.1 2.1E-07 4.5E-12 89.2 26.5 299 15-422 1-308 (335)
65 COG3980 spsG Spore coat polysa 99.1 3.8E-08 8.2E-13 88.6 19.8 150 274-445 158-309 (318)
66 cd03795 GT1_like_4 This family 99.0 3.4E-07 7.4E-12 89.7 29.0 150 275-442 191-349 (357)
67 PRK10307 putative glycosyl tra 99.0 9.6E-07 2.1E-11 88.8 32.7 117 334-464 284-409 (412)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 4.6E-08 1E-12 96.5 20.9 133 274-425 198-338 (363)
69 cd03822 GT1_ecORF704_like This 99.0 1.6E-06 3.5E-11 85.0 31.8 95 333-441 246-350 (366)
70 cd03811 GT1_WabH_like This fam 99.0 6.7E-07 1.5E-11 86.7 27.8 313 16-425 1-333 (353)
71 cd03799 GT1_amsK_like This is 99.0 8.2E-07 1.8E-11 87.0 28.2 94 333-439 235-341 (355)
72 cd03821 GT1_Bme6_like This fam 99.0 1.4E-06 3E-11 85.4 29.9 94 333-439 261-359 (375)
73 cd03807 GT1_WbnK_like This fam 98.9 1.8E-06 4E-11 84.2 28.9 78 334-425 251-333 (365)
74 TIGR02472 sucr_P_syn_N sucrose 98.9 3.2E-06 6.8E-11 85.7 29.8 93 333-438 316-419 (439)
75 cd03796 GT1_PIG-A_like This fa 98.9 3.2E-06 7E-11 84.6 28.7 132 274-425 192-334 (398)
76 cd04951 GT1_WbdM_like This fam 98.9 1.8E-06 3.8E-11 84.8 25.9 79 333-425 244-327 (360)
77 cd05844 GT1_like_7 Glycosyltra 98.8 3.1E-06 6.7E-11 83.5 26.9 94 333-439 244-350 (367)
78 TIGR02468 sucrsPsyn_pln sucros 98.8 6.2E-06 1.3E-10 89.0 28.6 97 334-441 548-653 (1050)
79 TIGR03088 stp2 sugar transfera 98.8 5.6E-06 1.2E-10 82.0 26.3 93 334-439 255-352 (374)
80 TIGR02149 glgA_Coryne glycogen 98.8 4.8E-06 1E-10 82.9 25.8 149 276-439 202-366 (388)
81 cd03812 GT1_CapH_like This fam 98.8 7.3E-06 1.6E-10 80.4 26.4 80 333-425 248-332 (358)
82 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 3.1E-06 6.6E-11 83.3 22.1 318 16-423 2-338 (365)
83 cd04955 GT1_like_6 This family 98.7 4.2E-05 9.1E-10 75.1 30.1 137 278-438 196-343 (363)
84 PRK14089 ipid-A-disaccharide s 98.7 1.6E-06 3.4E-11 83.8 18.4 100 345-456 230-344 (347)
85 cd03802 GT1_AviGT4_like This f 98.7 1.2E-05 2.5E-10 78.2 24.7 129 276-424 172-308 (335)
86 TIGR03087 stp1 sugar transfera 98.7 3.4E-06 7.4E-11 84.3 20.8 93 332-439 278-376 (397)
87 PLN02275 transferase, transfer 98.7 5E-05 1.1E-09 75.2 28.8 75 334-422 286-371 (371)
88 cd03809 GT1_mtfB_like This fam 98.6 5.4E-06 1.2E-10 81.2 21.4 91 332-437 251-348 (365)
89 COG1519 KdtA 3-deoxy-D-manno-o 98.6 0.00011 2.3E-09 71.0 28.6 314 17-442 51-403 (419)
90 PRK15179 Vi polysaccharide bio 98.6 5.1E-05 1.1E-09 80.0 28.8 96 333-439 573-673 (694)
91 PRK01021 lpxB lipid-A-disaccha 98.6 3E-05 6.5E-10 78.9 25.8 192 241-446 379-592 (608)
92 PRK09922 UDP-D-galactose:(gluc 98.6 1.4E-05 2.9E-10 78.9 23.2 134 275-425 180-325 (359)
93 cd03804 GT1_wbaZ_like This fam 98.5 3.4E-05 7.3E-10 75.7 23.8 184 215-436 151-338 (351)
94 PLN02949 transferase, transfer 98.5 0.0001 2.2E-09 74.8 27.2 115 333-463 334-457 (463)
95 cd03792 GT1_Trehalose_phosphor 98.5 7.8E-05 1.7E-09 73.8 25.9 111 333-461 251-370 (372)
96 PF02350 Epimerase_2: UDP-N-ac 98.5 1E-06 2.2E-11 85.9 11.8 246 102-425 52-319 (346)
97 PF02684 LpxB: Lipid-A-disacch 98.5 6.4E-05 1.4E-09 73.2 23.7 333 17-446 1-361 (373)
98 TIGR02470 sucr_synth sucrose s 98.5 0.00053 1.1E-08 72.8 31.5 93 334-437 619-725 (784)
99 KOG3349 Predicted glycosyltran 98.4 1.4E-06 3E-11 70.9 8.8 118 276-402 5-133 (170)
100 cd03806 GT1_ALG11_like This fa 98.4 0.00025 5.3E-09 71.4 27.3 95 333-441 304-409 (419)
101 COG0763 LpxB Lipid A disacchar 98.3 0.00032 6.9E-09 67.1 23.6 350 14-460 1-379 (381)
102 cd03791 GT1_Glycogen_synthase_ 98.3 0.00059 1.3E-08 70.0 27.8 83 334-424 351-442 (476)
103 COG0381 WecB UDP-N-acetylgluco 98.3 0.0003 6.5E-09 67.4 23.1 347 13-464 2-372 (383)
104 PLN02846 digalactosyldiacylgly 98.3 0.00067 1.4E-08 68.2 26.9 74 337-425 287-364 (462)
105 PRK00654 glgA glycogen synthas 98.3 0.00074 1.6E-08 69.0 26.9 67 346-423 352-427 (466)
106 TIGR02095 glgA glycogen/starch 98.3 0.0017 3.6E-08 66.6 29.0 78 334-423 346-436 (473)
107 PLN00142 sucrose synthase 98.2 0.0011 2.4E-08 70.5 26.0 72 356-438 670-749 (815)
108 PLN02501 digalactosyldiacylgly 98.1 0.0039 8.4E-08 64.7 27.5 76 335-425 602-682 (794)
109 cd04950 GT1_like_1 Glycosyltra 98.0 0.018 3.9E-07 57.0 30.1 79 333-425 253-341 (373)
110 cd04949 GT1_gtfA_like This fam 98.0 0.0022 4.8E-08 63.3 22.6 101 333-443 260-363 (372)
111 cd03813 GT1_like_3 This family 97.9 0.0017 3.7E-08 66.6 21.3 93 333-438 353-455 (475)
112 PF00534 Glycos_transf_1: Glyc 97.8 0.00025 5.4E-09 61.7 11.8 149 273-438 13-171 (172)
113 PRK14098 glycogen synthase; Pr 97.8 0.051 1.1E-06 55.8 29.0 80 333-422 361-449 (489)
114 PRK15484 lipopolysaccharide 1, 97.7 0.0012 2.5E-08 65.7 15.9 112 334-462 257-377 (380)
115 PLN02316 synthase/transferase 97.7 0.12 2.7E-06 56.8 32.2 79 335-424 901-998 (1036)
116 PRK10125 putative glycosyl tra 97.7 0.045 9.7E-07 54.8 26.7 116 276-419 242-366 (405)
117 PF13844 Glyco_transf_41: Glyc 97.7 0.00088 1.9E-08 66.8 13.8 173 273-461 283-465 (468)
118 PRK15427 colanic acid biosynth 97.7 0.00093 2E-08 67.0 14.3 113 333-461 278-404 (406)
119 TIGR02918 accessory Sec system 97.7 0.031 6.8E-07 57.4 25.5 117 333-461 375-498 (500)
120 cd04946 GT1_AmsK_like This fam 97.6 0.0014 3.1E-08 65.6 13.8 99 333-441 288-393 (407)
121 cd01635 Glycosyltransferase_GT 97.6 0.01 2.2E-07 53.5 18.4 26 24-49 12-37 (229)
122 COG5017 Uncharacterized conser 97.4 0.0014 2.9E-08 52.7 9.3 109 277-403 2-123 (161)
123 PF13692 Glyco_trans_1_4: Glyc 97.4 0.00068 1.5E-08 56.3 7.3 80 333-424 52-135 (135)
124 PRK15490 Vi polysaccharide bio 97.3 0.14 3E-06 52.5 23.9 64 333-403 454-522 (578)
125 PLN02939 transferase, transfer 97.2 0.49 1.1E-05 51.5 30.6 84 333-423 836-930 (977)
126 TIGR02193 heptsyl_trn_I lipopo 97.1 0.054 1.2E-06 52.3 19.0 106 16-141 1-110 (319)
127 PRK09814 beta-1,6-galactofuran 97.1 0.0035 7.5E-08 61.1 10.3 110 333-458 206-331 (333)
128 PRK14099 glycogen synthase; Pr 96.9 0.62 1.3E-05 47.8 28.3 40 13-52 2-47 (485)
129 PF13477 Glyco_trans_4_2: Glyc 96.8 0.026 5.6E-07 47.0 11.7 102 16-145 1-107 (139)
130 COG1817 Uncharacterized protei 96.6 0.53 1.2E-05 44.0 19.4 102 25-146 10-113 (346)
131 COG3914 Spy Predicted O-linked 96.5 0.059 1.3E-06 54.3 13.2 135 273-418 428-572 (620)
132 PRK10422 lipopolysaccharide co 96.2 0.33 7.2E-06 47.6 17.0 109 10-142 1-113 (352)
133 PHA01633 putative glycosyl tra 96.1 0.21 4.6E-06 48.3 14.5 84 334-424 201-307 (335)
134 PF13579 Glyco_trans_4_4: Glyc 96.0 0.022 4.7E-07 48.2 6.9 95 29-145 5-104 (160)
135 PRK10964 ADP-heptose:LPS hepto 95.8 0.78 1.7E-05 44.3 17.4 44 15-58 1-46 (322)
136 TIGR02201 heptsyl_trn_III lipo 95.7 1 2.2E-05 43.9 18.3 104 16-142 1-108 (344)
137 PHA01630 putative group 1 glyc 95.7 0.12 2.7E-06 50.1 11.5 112 341-462 197-330 (331)
138 KOG4626 O-linked N-acetylgluco 95.6 0.17 3.6E-06 51.5 11.7 121 274-403 758-889 (966)
139 PRK10017 colanic acid biosynth 95.5 0.22 4.8E-06 49.9 12.8 166 265-441 225-409 (426)
140 cd03789 GT1_LPS_heptosyltransf 94.9 3.3 7.2E-05 38.9 18.6 100 16-141 1-104 (279)
141 PF01975 SurE: Survival protei 94.8 0.2 4.2E-06 44.5 8.7 119 15-147 1-135 (196)
142 TIGR02195 heptsyl_trn_II lipop 94.8 2.4 5.2E-05 41.1 17.4 100 16-141 1-104 (334)
143 PF13524 Glyco_trans_1_2: Glyc 94.5 0.23 5.1E-06 37.9 7.7 83 359-457 9-91 (92)
144 PF13439 Glyco_transf_4: Glyco 94.4 0.49 1.1E-05 40.5 10.5 101 23-148 10-112 (177)
145 PF06722 DUF1205: Protein of u 94.4 0.082 1.8E-06 40.9 4.7 65 259-325 25-94 (97)
146 TIGR02400 trehalose_OtsA alpha 92.7 1 2.2E-05 45.8 10.8 104 338-460 340-454 (456)
147 COG0859 RfaF ADP-heptose:LPS h 92.7 9.1 0.0002 37.2 17.0 104 14-142 1-107 (334)
148 TIGR02919 accessory Sec system 92.1 3.1 6.8E-05 41.9 13.2 125 273-425 282-412 (438)
149 PF08660 Alg14: Oligosaccharid 91.2 0.92 2E-05 39.2 7.2 112 22-146 5-130 (170)
150 COG0438 RfaG Glycosyltransfera 90.9 7.7 0.00017 36.6 14.5 81 333-425 256-343 (381)
151 PRK02797 4-alpha-L-fucosyltran 90.3 4.5 9.8E-05 38.2 11.3 139 276-423 146-293 (322)
152 COG0496 SurE Predicted acid ph 90.0 2.3 4.9E-05 39.0 8.9 102 27-147 12-127 (252)
153 COG1618 Predicted nucleotide k 89.5 2.1 4.5E-05 36.3 7.6 104 13-125 4-109 (179)
154 PRK13932 stationary phase surv 88.8 5 0.00011 37.1 10.3 117 13-146 4-134 (257)
155 PF07429 Glyco_transf_56: 4-al 87.9 6.3 0.00014 37.9 10.6 141 275-424 184-333 (360)
156 PRK13933 stationary phase surv 87.6 6.1 0.00013 36.5 10.1 101 31-146 16-130 (253)
157 TIGR03713 acc_sec_asp1 accesso 87.3 0.63 1.4E-05 48.0 4.0 92 334-443 409-506 (519)
158 COG4370 Uncharacterized protei 86.9 2.8 6E-05 39.2 7.4 83 343-438 304-388 (412)
159 COG1066 Sms Predicted ATP-depe 86.9 9.2 0.0002 37.6 11.2 106 13-146 92-219 (456)
160 COG0003 ArsA Predicted ATPase 86.8 3.4 7.3E-05 39.7 8.3 43 14-56 1-44 (322)
161 cd03788 GT1_TPS Trehalose-6-Ph 86.6 1.3 2.8E-05 45.2 5.7 74 338-425 345-428 (460)
162 PF02374 ArsA_ATPase: Anion-tr 86.2 1.7 3.6E-05 41.6 6.0 42 16-57 2-44 (305)
163 PF12000 Glyco_trans_4_3: Gkyc 86.2 14 0.00031 31.9 11.0 92 40-145 1-96 (171)
164 KOG2941 Beta-1,4-mannosyltrans 85.2 16 0.00035 35.0 11.5 127 12-150 10-142 (444)
165 cd03793 GT1_Glycogen_synthase_ 84.6 3.9 8.5E-05 42.3 8.0 78 344-424 468-552 (590)
166 PRK10916 ADP-heptose:LPS hepto 83.1 9.1 0.0002 37.4 9.8 102 15-142 1-106 (348)
167 PF02310 B12-binding: B12 bind 82.8 14 0.0003 29.5 9.2 38 15-52 1-38 (121)
168 PRK05647 purN phosphoribosylgl 81.6 18 0.00038 32.3 10.1 103 14-146 1-111 (200)
169 PRK00346 surE 5'(3')-nucleotid 81.5 14 0.00031 34.0 9.7 100 27-146 12-125 (250)
170 TIGR00715 precor6x_red precorr 80.2 16 0.00034 34.0 9.6 90 16-144 2-99 (256)
171 PRK13931 stationary phase surv 79.7 20 0.00044 33.3 10.1 101 27-145 12-129 (261)
172 TIGR00087 surE 5'/3'-nucleotid 79.5 21 0.00046 32.8 10.2 104 27-146 12-129 (244)
173 PRK02261 methylaspartate mutas 79.1 5.2 0.00011 33.2 5.5 45 13-57 2-46 (137)
174 PRK13935 stationary phase surv 79.1 17 0.00036 33.7 9.2 104 27-146 12-129 (253)
175 cd02067 B12-binding B12 bindin 77.3 4 8.7E-05 32.8 4.3 38 16-53 1-38 (119)
176 COG1703 ArgK Putative periplas 77.0 37 0.0008 32.1 10.8 119 12-141 49-170 (323)
177 cd00550 ArsA_ATPase Oxyanion-t 75.7 21 0.00046 33.1 9.3 38 17-54 2-40 (254)
178 PF04413 Glycos_transf_N: 3-De 74.8 12 0.00026 32.9 6.9 99 16-145 22-126 (186)
179 PF06925 MGDG_synth: Monogalac 74.0 12 0.00026 32.2 6.7 45 102-146 74-125 (169)
180 COG2874 FlaH Predicted ATPases 73.7 28 0.0006 31.2 8.7 91 21-129 35-136 (235)
181 cd00561 CobA_CobO_BtuR ATP:cor 73.5 57 0.0012 27.8 10.8 95 16-126 4-105 (159)
182 PRK13934 stationary phase surv 72.9 21 0.00045 33.3 8.1 45 27-72 12-56 (266)
183 PF02951 GSH-S_N: Prokaryotic 72.8 5.7 0.00012 32.0 4.0 39 15-53 1-42 (119)
184 PF02441 Flavoprotein: Flavopr 72.7 4.2 9.2E-05 33.3 3.4 43 16-59 2-44 (129)
185 PRK05986 cob(I)alamin adenolsy 71.4 68 0.0015 28.3 10.6 98 13-126 21-125 (191)
186 PLN03063 alpha,alpha-trehalose 71.2 12 0.00025 41.1 7.1 99 346-462 371-477 (797)
187 COG4088 Predicted nucleotide k 71.1 76 0.0017 28.4 10.6 38 15-52 2-39 (261)
188 PF00448 SRP54: SRP54-type pro 70.6 40 0.00087 29.8 9.3 38 17-54 4-41 (196)
189 PF06564 YhjQ: YhjQ protein; 70.1 35 0.00076 31.3 9.0 37 15-51 2-39 (243)
190 PRK06849 hypothetical protein; 69.3 33 0.00073 34.0 9.6 37 13-53 3-39 (389)
191 PF01012 ETF: Electron transfe 69.0 30 0.00065 29.5 8.0 105 17-146 2-123 (164)
192 PRK14501 putative bifunctional 68.9 10 0.00022 41.2 6.2 112 337-463 345-463 (726)
193 PF12146 Hydrolase_4: Putative 68.6 9.7 0.00021 28.1 4.2 34 15-48 16-49 (79)
194 PF05159 Capsule_synth: Capsul 68.5 16 0.00035 34.1 6.8 42 336-380 185-226 (269)
195 cd01121 Sms Sms (bacterial rad 67.9 73 0.0016 31.5 11.3 41 17-57 85-125 (372)
196 PF00551 Formyl_trans_N: Formy 67.7 72 0.0016 27.7 10.3 106 15-147 1-111 (181)
197 KOG1387 Glycosyltransferase [C 67.6 1.2E+02 0.0027 29.3 23.3 369 12-446 41-446 (465)
198 TIGR00708 cobA cob(I)alamin ad 67.3 83 0.0018 27.2 10.5 95 15-126 6-107 (173)
199 KOG0853 Glycosyltransferase [C 67.3 9.3 0.0002 38.8 5.0 59 358-425 376-434 (495)
200 PRK08305 spoVFB dipicolinate s 66.8 9.5 0.00021 33.7 4.4 43 14-57 5-48 (196)
201 PRK06718 precorrin-2 dehydroge 66.5 95 0.0021 27.6 12.4 146 274-446 11-165 (202)
202 PF06258 Mito_fiss_Elm1: Mitoc 65.4 1.3E+02 0.0029 28.8 14.3 57 343-402 221-281 (311)
203 PRK10867 signal recognition pa 64.6 58 0.0013 32.8 10.0 42 15-56 101-143 (433)
204 PRK06988 putative formyltransf 64.4 36 0.00078 32.7 8.3 41 108-148 68-110 (312)
205 PRK08057 cobalt-precorrin-6x r 64.1 74 0.0016 29.4 10.0 91 14-145 2-100 (248)
206 TIGR02655 circ_KaiC circadian 63.2 84 0.0018 32.3 11.3 109 14-145 263-397 (484)
207 PRK07313 phosphopantothenoylcy 62.9 10 0.00022 33.2 3.9 43 15-58 2-44 (182)
208 PF02606 LpxK: Tetraacyldisacc 62.8 36 0.00078 32.9 8.0 90 20-124 43-135 (326)
209 PF04464 Glyphos_transf: CDP-G 62.4 14 0.0003 36.3 5.3 98 334-446 252-354 (369)
210 PF01075 Glyco_transf_9: Glyco 62.4 31 0.00068 31.5 7.4 99 273-378 104-208 (247)
211 COG0541 Ffh Signal recognition 62.3 26 0.00055 34.9 6.8 45 13-57 99-143 (451)
212 PRK06067 flagellar accessory p 61.0 16 0.00034 33.4 5.0 41 15-55 26-66 (234)
213 PF00862 Sucrose_synth: Sucros 61.0 37 0.0008 34.5 7.7 117 25-147 296-434 (550)
214 COG2910 Putative NADH-flavin r 60.3 10 0.00022 33.0 3.3 36 15-54 1-36 (211)
215 PRK06029 3-octaprenyl-4-hydrox 60.0 12 0.00025 32.9 3.7 44 14-58 1-45 (185)
216 PRK13789 phosphoribosylamine-- 59.5 26 0.00057 35.3 6.7 90 13-141 3-96 (426)
217 PLN02929 NADH kinase 59.3 14 0.0003 35.1 4.3 65 350-424 64-137 (301)
218 TIGR00064 ftsY signal recognit 59.3 1.2E+02 0.0027 28.3 10.8 40 15-54 73-112 (272)
219 PRK11823 DNA repair protein Ra 59.0 53 0.0012 33.3 8.8 42 16-57 82-123 (446)
220 PRK05920 aromatic acid decarbo 58.8 14 0.0003 33.0 4.0 44 14-58 3-46 (204)
221 PF02571 CbiJ: Precorrin-6x re 57.5 63 0.0014 29.9 8.3 93 15-145 1-101 (249)
222 COG2185 Sbm Methylmalonyl-CoA 57.5 21 0.00045 29.7 4.5 44 12-55 10-53 (143)
223 TIGR01425 SRP54_euk signal rec 57.3 1E+02 0.0022 31.0 10.2 41 15-55 101-141 (429)
224 PRK03359 putative electron tra 57.1 20 0.00043 33.3 4.9 39 108-146 103-148 (256)
225 PF02826 2-Hacid_dh_C: D-isome 56.8 18 0.00039 31.4 4.5 106 273-420 36-143 (178)
226 smart00851 MGS MGS-like domain 56.7 61 0.0013 24.3 6.9 78 31-141 2-89 (90)
227 cd02037 MRP-like MRP (Multiple 56.6 50 0.0011 28.2 7.2 36 17-52 2-38 (169)
228 TIGR01470 cysG_Nterm siroheme 56.5 1.5E+02 0.0032 26.5 11.7 149 274-446 10-165 (205)
229 TIGR03878 thermo_KaiC_2 KaiC d 56.1 45 0.00097 31.0 7.2 39 16-54 38-76 (259)
230 PRK04328 hypothetical protein; 56.1 1.7E+02 0.0036 27.0 12.0 44 14-57 23-66 (249)
231 PRK12342 hypothetical protein; 56.0 22 0.00047 33.0 5.0 39 108-146 100-145 (254)
232 TIGR00959 ffh signal recogniti 55.8 1E+02 0.0022 31.1 10.0 41 16-56 101-142 (428)
233 PRK04885 ppnK inorganic polyph 55.7 20 0.00044 33.4 4.8 53 350-424 35-93 (265)
234 PF05693 Glycogen_syn: Glycoge 55.7 24 0.00053 36.7 5.6 94 343-443 462-566 (633)
235 TIGR00460 fmt methionyl-tRNA f 55.5 50 0.0011 31.7 7.6 33 15-52 1-33 (313)
236 PF02142 MGS: MGS-like domain 55.3 8.4 0.00018 29.5 1.9 83 31-141 2-94 (95)
237 cd02070 corrinoid_protein_B12- 55.3 26 0.00057 31.1 5.3 41 13-53 81-121 (201)
238 cd00532 MGS-like MGS-like doma 55.2 64 0.0014 25.5 7.0 83 27-142 10-104 (112)
239 PRK02155 ppnK NAD(+)/NADH kina 55.0 23 0.0005 33.6 5.1 54 349-424 62-119 (291)
240 cd02071 MM_CoA_mut_B12_BD meth 54.3 24 0.00051 28.5 4.5 38 16-53 1-38 (122)
241 PF00731 AIRC: AIR carboxylase 54.2 76 0.0016 26.7 7.4 139 276-444 2-147 (150)
242 TIGR02370 pyl_corrinoid methyl 53.6 31 0.00066 30.6 5.4 43 13-55 83-125 (197)
243 PRK13768 GTPase; Provisional 53.5 52 0.0011 30.5 7.2 37 17-53 5-41 (253)
244 COG0052 RpsB Ribosomal protein 53.4 27 0.0006 31.8 5.0 29 118-146 157-188 (252)
245 PF07015 VirC1: VirC1 protein; 53.0 34 0.00073 31.1 5.5 43 15-57 2-45 (231)
246 PRK05595 replicative DNA helic 52.7 1E+02 0.0023 31.2 9.8 41 17-57 204-245 (444)
247 cd01424 MGS_CPS_II Methylglyox 52.6 97 0.0021 24.2 7.7 83 26-142 10-100 (110)
248 PRK13011 formyltetrahydrofolat 52.1 1.6E+02 0.0034 27.9 10.2 104 12-146 87-196 (286)
249 TIGR02852 spore_dpaB dipicolin 51.8 20 0.00043 31.5 3.8 40 16-55 2-41 (187)
250 PRK00005 fmt methionyl-tRNA fo 51.5 1.4E+02 0.0031 28.5 10.0 41 108-148 69-111 (309)
251 TIGR03446 mycothiol_Mca mycoth 51.1 1.6E+02 0.0034 27.9 9.9 20 104-123 108-127 (283)
252 cd07039 TPP_PYR_POX Pyrimidine 51.1 1.6E+02 0.0034 25.2 9.7 27 353-379 64-96 (164)
253 PRK14077 pnk inorganic polypho 50.5 26 0.00057 33.1 4.7 57 346-424 60-120 (287)
254 TIGR00416 sms DNA repair prote 50.2 77 0.0017 32.3 8.3 42 16-57 96-137 (454)
255 PF06506 PrpR_N: Propionate ca 50.2 27 0.00058 30.3 4.4 31 350-381 32-62 (176)
256 COG1484 DnaC DNA replication p 50.0 20 0.00044 33.2 3.8 44 14-57 105-148 (254)
257 COG0223 Fmt Methionyl-tRNA for 49.7 65 0.0014 30.7 7.1 37 14-55 1-37 (307)
258 PRK02231 ppnK inorganic polyph 49.4 22 0.00049 33.3 4.0 60 343-424 35-98 (272)
259 PF09001 DUF1890: Domain of un 48.8 16 0.00035 29.9 2.6 33 27-59 12-44 (139)
260 KOG1250 Threonine/serine dehyd 48.7 1.6E+02 0.0034 29.2 9.4 62 356-425 248-317 (457)
261 cd01124 KaiC KaiC is a circadi 48.7 1.4E+02 0.003 25.6 8.9 41 17-57 2-42 (187)
262 PRK08760 replicative DNA helic 48.6 97 0.0021 31.8 8.8 42 16-57 231-273 (476)
263 PRK09219 xanthine phosphoribos 48.4 45 0.00098 29.4 5.6 44 102-145 35-81 (189)
264 COG1663 LpxK Tetraacyldisaccha 48.2 50 0.0011 31.8 6.1 33 20-52 55-87 (336)
265 cd01425 RPS2 Ribosomal protein 48.0 1.9E+02 0.004 25.5 9.5 31 117-147 127-160 (193)
266 PRK10916 ADP-heptose:LPS hepto 47.9 58 0.0013 31.7 6.9 97 273-378 179-286 (348)
267 PRK03372 ppnK inorganic polyph 47.8 35 0.00076 32.6 5.1 56 347-424 69-128 (306)
268 cd03466 Nitrogenase_NifN_2 Nit 47.2 1.5E+02 0.0033 29.8 9.9 36 107-144 362-397 (429)
269 PF07355 GRDB: Glycine/sarcosi 47.0 40 0.00088 32.5 5.3 48 97-144 60-118 (349)
270 cd02069 methionine_synthase_B1 47.0 40 0.00086 30.3 5.1 42 13-54 87-128 (213)
271 PRK06321 replicative DNA helic 46.5 2E+02 0.0043 29.5 10.6 41 17-57 229-270 (472)
272 cd08783 Death_MALT1 Death doma 46.4 66 0.0014 24.5 5.2 62 382-457 20-81 (97)
273 TIGR00421 ubiX_pad polyprenyl 46.3 24 0.00051 30.9 3.4 41 17-58 2-42 (181)
274 COG2159 Predicted metal-depend 46.1 1.7E+02 0.0038 27.7 9.6 106 246-368 99-210 (293)
275 cd01965 Nitrogenase_MoFe_beta_ 46.1 1.4E+02 0.0031 30.0 9.6 36 107-144 361-396 (428)
276 PF05728 UPF0227: Uncharacteri 46.1 47 0.001 29.2 5.3 43 106-148 46-92 (187)
277 PF05225 HTH_psq: helix-turn-h 46.0 33 0.00071 22.2 3.2 25 410-439 1-26 (45)
278 COG0503 Apt Adenine/guanine ph 45.8 55 0.0012 28.5 5.7 37 108-144 44-83 (179)
279 cd01423 MGS_CPS_I_III Methylgl 45.6 1E+02 0.0023 24.3 6.9 85 27-141 11-105 (116)
280 PF09314 DUF1972: Domain of un 45.2 2.1E+02 0.0046 25.0 10.9 58 14-74 1-63 (185)
281 PRK04539 ppnK inorganic polyph 44.9 47 0.001 31.6 5.5 57 346-424 64-124 (296)
282 PF02571 CbiJ: Precorrin-6x re 44.9 2E+02 0.0043 26.6 9.5 101 31-144 118-226 (249)
283 COG3660 Predicted nucleoside-d 44.7 2.7E+02 0.0058 26.0 17.8 37 340-378 234-271 (329)
284 COG2894 MinD Septum formation 44.6 39 0.00085 30.5 4.4 38 14-51 1-40 (272)
285 PF02702 KdpD: Osmosensitive K 44.6 43 0.00093 29.7 4.7 40 14-53 5-44 (211)
286 PRK02649 ppnK inorganic polyph 44.4 36 0.00079 32.5 4.6 55 348-424 66-124 (305)
287 cd03115 SRP The signal recogni 44.3 2E+02 0.0043 24.4 10.5 38 17-54 3-40 (173)
288 PRK06027 purU formyltetrahydro 44.1 1.8E+02 0.0039 27.5 9.3 104 11-145 86-195 (286)
289 PF01210 NAD_Gly3P_dh_N: NAD-d 44.0 19 0.00041 30.5 2.5 32 16-52 1-32 (157)
290 PRK13196 pyrrolidone-carboxyla 43.9 82 0.0018 28.3 6.6 28 14-41 1-30 (211)
291 PRK05636 replicative DNA helic 43.3 1E+02 0.0022 31.9 8.0 42 16-57 267-309 (505)
292 TIGR01285 nifN nitrogenase mol 43.2 2E+02 0.0042 29.1 9.9 35 108-144 364-398 (432)
293 TIGR03877 thermo_KaiC_1 KaiC d 43.1 2.6E+02 0.0056 25.4 12.5 44 14-57 21-64 (237)
294 PRK07773 replicative DNA helic 42.9 1.3E+02 0.0028 33.6 9.3 41 17-57 220-261 (886)
295 PRK09165 replicative DNA helic 42.9 1.7E+02 0.0037 30.2 9.6 41 17-57 220-275 (497)
296 PRK10416 signal recognition pa 42.6 2.3E+02 0.005 27.3 9.9 40 15-54 115-154 (318)
297 PRK08506 replicative DNA helic 41.9 2E+02 0.0044 29.4 9.9 42 16-57 194-235 (472)
298 PLN02935 Bifunctional NADH kin 41.9 48 0.001 33.9 5.2 54 349-424 261-318 (508)
299 PRK01911 ppnK inorganic polyph 41.8 44 0.00096 31.7 4.8 57 346-424 60-120 (292)
300 TIGR02113 coaC_strep phosphopa 41.7 28 0.00062 30.2 3.2 42 16-58 2-43 (177)
301 PRK08006 replicative DNA helic 41.3 2.1E+02 0.0046 29.3 9.9 42 16-57 226-268 (471)
302 PRK06249 2-dehydropantoate 2-r 41.3 56 0.0012 31.3 5.5 37 12-53 3-39 (313)
303 TIGR00345 arsA arsenite-activa 41.1 64 0.0014 30.4 5.8 25 32-56 3-27 (284)
304 TIGR00682 lpxK tetraacyldisacc 41.1 1.1E+02 0.0024 29.3 7.4 33 20-52 36-68 (311)
305 PRK07206 hypothetical protein; 41.0 94 0.002 31.0 7.4 33 15-52 3-35 (416)
306 TIGR02700 flavo_MJ0208 archaeo 40.6 38 0.00083 30.9 4.1 37 24-60 8-47 (234)
307 PRK12311 rpsB 30S ribosomal pr 40.0 1E+02 0.0022 29.8 6.8 31 117-147 152-185 (326)
308 TIGR00639 PurN phosphoribosylg 39.9 2.6E+02 0.0057 24.6 10.1 102 15-146 1-110 (190)
309 PF04127 DFP: DNA / pantothena 39.4 31 0.00067 30.3 3.1 32 19-52 22-53 (185)
310 PF08323 Glyco_transf_5: Starc 39.2 42 0.0009 30.9 4.1 27 26-52 17-43 (245)
311 PF10649 DUF2478: Protein of u 39.1 2.4E+02 0.0053 24.0 10.9 115 20-147 4-133 (159)
312 KOG2825 Putative arsenite-tran 39.1 86 0.0019 28.9 5.8 44 12-55 16-60 (323)
313 TIGR02237 recomb_radB DNA repa 39.1 2.4E+02 0.0052 24.8 9.1 36 17-52 15-50 (209)
314 PRK08125 bifunctional UDP-gluc 38.7 1.9E+02 0.0042 31.0 9.6 40 109-148 67-108 (660)
315 TIGR02398 gluc_glyc_Psyn gluco 38.5 1.1E+02 0.0025 31.4 7.4 110 336-463 364-483 (487)
316 PRK03708 ppnK inorganic polyph 38.4 43 0.00093 31.5 4.1 53 350-424 57-112 (277)
317 PRK03378 ppnK inorganic polyph 38.4 52 0.0011 31.2 4.7 57 346-424 59-119 (292)
318 PF01470 Peptidase_C15: Pyrogl 38.4 84 0.0018 28.0 5.8 26 15-40 1-28 (202)
319 PRK15469 ghrA bifunctional gly 38.3 2.7E+02 0.0059 26.7 9.7 104 274-419 137-241 (312)
320 COG2099 CobK Precorrin-6x redu 38.3 2.5E+02 0.0055 25.9 8.7 37 382-419 183-220 (257)
321 PLN02470 acetolactate synthase 37.8 1.1E+02 0.0024 32.2 7.6 90 280-379 2-109 (585)
322 PRK04940 hypothetical protein; 37.4 90 0.0019 27.2 5.6 31 117-147 60-92 (180)
323 PRK05784 phosphoribosylamine-- 37.4 1.9E+02 0.004 29.8 8.8 33 15-52 1-35 (486)
324 PRK13886 conjugal transfer pro 37.4 3.3E+02 0.0072 25.0 10.2 39 16-54 3-43 (241)
325 PF00282 Pyridoxal_deC: Pyrido 37.2 88 0.0019 30.9 6.3 70 353-424 104-191 (373)
326 PF05014 Nuc_deoxyrib_tr: Nucl 37.1 41 0.00089 26.6 3.3 36 345-380 56-97 (113)
327 TIGR01744 XPRTase xanthine pho 37.0 86 0.0019 27.6 5.6 44 102-145 35-81 (191)
328 PRK11199 tyrA bifunctional cho 36.7 3E+02 0.0065 27.2 10.0 35 13-52 97-132 (374)
329 PLN02496 probable phosphopanto 36.6 63 0.0014 28.9 4.6 46 12-59 17-62 (209)
330 PF02585 PIG-L: GlcNAc-PI de-N 36.4 2.2E+02 0.0048 22.7 8.1 23 102-124 85-107 (128)
331 PRK13197 pyrrolidone-carboxyla 36.4 1.3E+02 0.0027 27.2 6.6 27 14-40 1-29 (215)
332 COG1154 Dxs Deoxyxylulose-5-ph 36.2 2.7E+02 0.0058 29.2 9.4 52 359-423 565-623 (627)
333 TIGR01501 MthylAspMutase methy 36.1 85 0.0018 25.9 5.0 43 15-57 2-44 (134)
334 TIGR01917 gly_red_sel_B glycin 36.1 75 0.0016 31.6 5.4 48 97-144 56-114 (431)
335 PRK13195 pyrrolidone-carboxyla 36.0 91 0.002 28.2 5.6 27 14-40 1-29 (222)
336 PRK13185 chlL protochlorophyll 36.0 62 0.0013 30.1 4.8 35 17-51 5-39 (270)
337 TIGR01918 various_sel_PB selen 36.0 76 0.0017 31.6 5.4 48 97-144 56-114 (431)
338 PLN02293 adenine phosphoribosy 35.9 1E+02 0.0023 27.0 5.9 43 102-144 47-92 (187)
339 PRK08410 2-hydroxyacid dehydro 35.7 1.8E+02 0.0039 27.9 8.0 100 274-420 146-248 (311)
340 COG3340 PepE Peptidase E [Amin 35.6 1.3E+02 0.0029 26.9 6.3 46 262-308 22-67 (224)
341 PF14626 RNase_Zc3h12a_2: Zc3h 35.5 39 0.00085 26.9 2.7 31 28-58 9-39 (122)
342 PRK06270 homoserine dehydrogen 35.4 2.9E+02 0.0063 26.8 9.5 59 343-402 80-150 (341)
343 PRK14075 pnk inorganic polypho 35.3 63 0.0014 30.0 4.7 53 350-424 41-94 (256)
344 cd01421 IMPCH Inosine monophos 35.3 1.2E+02 0.0025 26.7 5.9 38 29-73 11-48 (187)
345 CHL00072 chlL photochlorophyll 35.1 68 0.0015 30.4 5.0 39 15-53 1-39 (290)
346 cd03114 ArgK-like The function 35.1 2.7E+02 0.0058 23.2 11.0 36 17-52 2-37 (148)
347 cd02034 CooC The accessory pro 35.0 93 0.002 24.8 5.0 37 16-52 1-37 (116)
348 CHL00076 chlB photochlorophyll 34.9 59 0.0013 33.7 4.8 36 107-144 364-399 (513)
349 TIGR00725 conserved hypothetic 34.7 1.5E+02 0.0032 25.2 6.5 38 342-380 82-123 (159)
350 PRK13194 pyrrolidone-carboxyla 34.6 1.4E+02 0.003 26.8 6.5 26 15-40 1-28 (208)
351 PF00070 Pyr_redox: Pyridine n 34.2 1.3E+02 0.0028 21.8 5.4 24 29-52 9-32 (80)
352 PRK09620 hypothetical protein; 34.1 59 0.0013 29.6 4.2 30 21-52 24-53 (229)
353 PLN02928 oxidoreductase family 34.1 1.7E+02 0.0036 28.6 7.6 117 274-419 160-277 (347)
354 PRK01185 ppnK inorganic polyph 34.1 61 0.0013 30.4 4.3 53 350-424 52-105 (271)
355 PF15092 UPF0728: Uncharacteri 34.1 1.4E+02 0.003 22.4 5.2 33 21-53 13-49 (88)
356 PRK05632 phosphate acetyltrans 34.0 5.4E+02 0.012 27.9 12.1 35 16-50 4-39 (684)
357 PRK06719 precorrin-2 dehydroge 34.0 64 0.0014 27.4 4.2 45 6-55 5-49 (157)
358 PRK05748 replicative DNA helic 34.0 3.5E+02 0.0075 27.5 10.2 42 16-57 205-247 (448)
359 PRK15438 erythronate-4-phospha 34.0 2E+02 0.0044 28.4 8.1 60 274-361 117-176 (378)
360 PRK13234 nifH nitrogenase redu 33.9 75 0.0016 30.2 5.1 41 12-52 2-42 (295)
361 TIGR01743 purR_Bsub pur operon 33.8 90 0.002 29.2 5.4 39 107-145 118-159 (268)
362 PRK00784 cobyric acid synthase 33.8 5.4E+02 0.012 26.5 11.6 35 16-50 4-39 (488)
363 cd07038 TPP_PYR_PDC_IPDC_like 33.6 80 0.0017 26.9 4.7 27 353-379 60-92 (162)
364 PRK03501 ppnK inorganic polyph 33.6 79 0.0017 29.5 5.0 53 351-424 40-97 (264)
365 PF10093 DUF2331: Uncharacteri 33.3 68 0.0015 31.5 4.6 89 288-379 193-289 (374)
366 TIGR00665 DnaB replicative DNA 33.2 3.4E+02 0.0075 27.3 10.0 42 16-57 197-239 (434)
367 COG4081 Uncharacterized protei 33.2 77 0.0017 25.7 4.0 29 26-54 16-44 (148)
368 cd01018 ZntC Metal binding pro 33.1 3.3E+02 0.0072 25.3 9.2 42 105-146 205-249 (266)
369 cd02032 Bchl_like This family 33.1 71 0.0015 29.7 4.7 37 16-52 2-38 (267)
370 KOG3062 RNA polymerase II elon 32.9 87 0.0019 28.4 4.8 30 15-44 2-31 (281)
371 PRK07525 sulfoacetaldehyde ace 32.8 2.4E+02 0.0051 29.9 9.1 27 353-379 69-101 (588)
372 PRK01231 ppnK inorganic polyph 32.7 76 0.0016 30.2 4.8 53 350-424 62-118 (295)
373 PRK13810 orotate phosphoribosy 32.7 1.1E+02 0.0023 27.0 5.4 38 108-145 64-104 (187)
374 PRK02910 light-independent pro 32.4 78 0.0017 32.9 5.3 36 107-144 352-387 (519)
375 TIGR01278 DPOR_BchB light-inde 32.4 75 0.0016 32.9 5.1 36 108-145 355-390 (511)
376 PRK06395 phosphoribosylamine-- 32.2 3.3E+02 0.0071 27.6 9.6 32 14-50 2-33 (435)
377 cd02065 B12-binding_like B12 b 32.2 96 0.0021 24.6 4.8 37 17-53 2-38 (125)
378 cd01976 Nitrogenase_MoFe_alpha 32.1 60 0.0013 32.7 4.3 36 107-144 359-394 (421)
379 COG1435 Tdk Thymidine kinase [ 32.1 3.6E+02 0.0079 23.9 8.8 40 14-53 3-43 (201)
380 PRK00207 sulfur transfer compl 32.0 90 0.0019 25.5 4.5 37 16-52 2-42 (128)
381 PLN02285 methionyl-tRNA formyl 32.0 3.3E+02 0.0071 26.4 9.2 40 108-147 84-125 (334)
382 TIGR02195 heptsyl_trn_II lipop 31.9 3.2E+02 0.0069 26.2 9.3 98 16-146 176-279 (334)
383 PLN02331 phosphoribosylglycina 31.7 3.8E+02 0.0082 24.0 8.9 40 108-147 69-110 (207)
384 COG1748 LYS9 Saccharopine dehy 31.7 3E+02 0.0065 27.4 8.8 34 14-52 1-35 (389)
385 PRK06932 glycerate dehydrogena 31.7 2.1E+02 0.0045 27.5 7.7 100 274-419 148-248 (314)
386 TIGR01281 DPOR_bchL light-inde 31.6 79 0.0017 29.3 4.8 36 16-51 2-37 (268)
387 PF08766 DEK_C: DEK C terminal 31.5 1.6E+02 0.0035 19.7 6.2 49 410-458 1-50 (54)
388 cd02040 NifH NifH gene encodes 31.4 83 0.0018 29.1 4.9 38 15-52 2-39 (270)
389 cd01980 Chlide_reductase_Y Chl 31.2 79 0.0017 31.8 5.0 33 110-144 343-375 (416)
390 cd01981 Pchlide_reductase_B Pc 31.2 81 0.0018 31.8 5.1 38 107-146 360-397 (430)
391 PRK09213 pur operon repressor; 31.2 1.1E+02 0.0023 28.8 5.4 39 107-145 120-161 (271)
392 PF10933 DUF2827: Protein of u 31.1 1.8E+02 0.0038 28.4 6.9 92 336-446 255-351 (364)
393 cd01141 TroA_d Periplasmic bin 31.0 81 0.0018 27.3 4.5 35 109-144 62-99 (186)
394 PF13450 NAD_binding_8: NAD(P) 30.8 60 0.0013 23.0 3.0 22 32-53 9-30 (68)
395 PRK09435 membrane ATPase/prote 30.8 5E+02 0.011 25.2 10.1 43 13-55 55-97 (332)
396 PRK10037 cell division protein 30.8 85 0.0018 28.9 4.8 37 16-52 3-40 (250)
397 PRK06276 acetolactate synthase 30.5 2.5E+02 0.0053 29.7 8.7 27 353-379 64-96 (586)
398 PRK12767 carbamoyl phosphate s 30.4 3.4E+02 0.0073 25.9 9.1 33 14-52 1-35 (326)
399 PRK07004 replicative DNA helic 30.0 4.3E+02 0.0092 27.0 10.0 41 17-57 216-257 (460)
400 cd03412 CbiK_N Anaerobic cobal 29.9 88 0.0019 25.4 4.2 37 275-311 2-40 (127)
401 PF06745 KaiC: KaiC; InterPro 29.3 3.9E+02 0.0085 23.8 8.9 95 14-126 19-125 (226)
402 TIGR02699 archaeo_AfpA archaeo 29.3 63 0.0014 28.0 3.3 35 24-58 8-44 (174)
403 PRK06732 phosphopantothenate-- 29.2 75 0.0016 28.9 4.0 33 17-51 17-49 (229)
404 PRK13230 nitrogenase reductase 29.2 98 0.0021 29.0 5.0 39 14-52 1-39 (279)
405 PRK05562 precorrin-2 dehydroge 29.1 4.4E+02 0.0095 23.9 9.0 151 267-446 20-180 (223)
406 PRK05579 bifunctional phosphop 29.1 73 0.0016 31.8 4.2 45 13-58 5-49 (399)
407 COG4394 Uncharacterized protei 29.0 4.7E+02 0.01 24.8 8.9 39 335-376 239-280 (370)
408 PRK13010 purU formyltetrahydro 28.9 4.5E+02 0.0097 24.9 9.2 109 11-148 90-202 (289)
409 TIGR03880 KaiC_arch_3 KaiC dom 28.9 4.2E+02 0.0091 23.6 10.5 42 16-57 18-59 (224)
410 COG1348 NifH Nitrogenase subun 28.8 1.2E+02 0.0026 27.7 5.0 41 14-54 1-41 (278)
411 COG0801 FolK 7,8-dihydro-6-hyd 28.8 1.2E+02 0.0025 25.9 4.7 29 276-304 3-31 (160)
412 TIGR00521 coaBC_dfp phosphopan 28.8 67 0.0014 32.0 3.8 44 14-58 3-46 (390)
413 PRK08322 acetolactate synthase 28.7 2.8E+02 0.006 28.9 8.7 27 353-379 64-96 (547)
414 PRK07710 acetolactate synthase 28.7 2.4E+02 0.0051 29.7 8.2 27 353-379 79-111 (571)
415 PRK07574 formate dehydrogenase 28.6 4.1E+02 0.009 26.4 9.3 71 274-367 193-263 (385)
416 PF01497 Peripla_BP_2: Peripla 28.6 83 0.0018 28.3 4.3 37 111-147 54-93 (238)
417 TIGR01007 eps_fam capsular exo 28.6 1.3E+02 0.0028 26.5 5.5 38 15-52 18-56 (204)
418 TIGR01012 Sa_S2_E_A ribosomal 28.4 75 0.0016 28.1 3.7 32 116-147 107-141 (196)
419 TIGR02482 PFKA_ATP 6-phosphofr 28.3 50 0.0011 31.5 2.8 38 346-383 85-126 (301)
420 PRK06487 glycerate dehydrogena 28.3 2.8E+02 0.006 26.7 7.9 99 274-419 149-248 (317)
421 COG2210 Peroxiredoxin family p 28.3 90 0.0019 25.8 3.8 33 20-52 9-41 (137)
422 PRK12315 1-deoxy-D-xylulose-5- 28.1 4E+02 0.0086 28.2 9.6 52 358-422 524-580 (581)
423 cd01983 Fer4_NifH The Fer4_Nif 28.0 1.3E+02 0.0029 21.9 4.8 33 17-49 2-34 (99)
424 PF09884 DUF2111: Uncharacteri 28.0 22 0.00047 26.3 0.2 20 364-383 50-69 (84)
425 PRK05299 rpsB 30S ribosomal pr 27.8 3.3E+02 0.0072 25.3 8.0 30 117-146 157-189 (258)
426 PRK15409 bifunctional glyoxyla 27.8 3.1E+02 0.0067 26.5 8.2 104 274-419 146-251 (323)
427 PRK04761 ppnK inorganic polyph 27.7 48 0.001 30.6 2.5 28 351-380 26-57 (246)
428 TIGR02853 spore_dpaA dipicolin 27.6 2.6E+02 0.0057 26.4 7.5 101 29-143 11-119 (287)
429 PF13460 NAD_binding_10: NADH( 27.6 86 0.0019 26.8 4.1 30 23-54 5-34 (183)
430 PRK00771 signal recognition pa 27.2 1.3E+02 0.0028 30.4 5.6 43 13-55 94-136 (437)
431 PRK00039 ruvC Holliday junctio 27.1 1.9E+02 0.0041 24.7 5.9 45 102-146 46-106 (164)
432 TIGR00640 acid_CoA_mut_C methy 27.0 1.6E+02 0.0034 24.2 5.2 41 14-54 2-42 (132)
433 COG3367 Uncharacterized conser 27.0 4E+02 0.0088 25.6 8.3 41 15-55 148-190 (339)
434 PRK06731 flhF flagellar biosyn 26.8 5.3E+02 0.012 24.1 10.1 42 13-54 74-115 (270)
435 TIGR02201 heptsyl_trn_III lipo 26.8 4.7E+02 0.01 25.1 9.5 38 106-146 251-288 (344)
436 PF01695 IstB_IS21: IstB-like 26.6 1.3E+02 0.0028 26.1 4.9 44 13-56 46-89 (178)
437 PLN00016 RNA-binding protein; 26.5 75 0.0016 31.3 3.9 39 12-52 50-90 (378)
438 PF12363 DUF3647: Phage protei 26.4 1.6E+02 0.0036 23.3 5.0 56 394-456 56-111 (113)
439 PRK00257 erythronate-4-phospha 26.4 3.3E+02 0.0072 27.0 8.2 61 274-362 117-177 (381)
440 COG0552 FtsY Signal recognitio 26.4 1.4E+02 0.003 28.9 5.2 44 14-57 139-182 (340)
441 cd00861 ProRS_anticodon_short 26.3 1.2E+02 0.0026 22.6 4.2 36 15-50 2-39 (94)
442 PRK13604 luxD acyl transferase 26.3 1.4E+02 0.003 28.6 5.3 36 13-48 35-70 (307)
443 PF01297 TroA: Periplasmic sol 26.2 3.1E+02 0.0068 25.1 7.8 79 42-145 149-230 (256)
444 cd07037 TPP_PYR_MenD Pyrimidin 25.7 50 0.0011 28.2 2.1 25 355-379 63-93 (162)
445 TIGR02015 BchY chlorophyllide 25.6 94 0.002 31.3 4.3 32 111-144 349-380 (422)
446 COG0287 TyrA Prephenate dehydr 25.5 5.6E+02 0.012 24.1 9.2 39 14-57 3-41 (279)
447 PF02056 Glyco_hydro_4: Family 25.4 3.5E+02 0.0076 23.7 7.3 128 16-150 30-173 (183)
448 PRK13193 pyrrolidone-carboxyla 25.4 2.8E+02 0.0061 24.8 6.9 26 15-40 1-28 (209)
449 cd03789 GT1_LPS_heptosyltransf 25.3 2.2E+02 0.0048 26.4 6.7 89 27-146 138-226 (279)
450 PF07801 DUF1647: Protein of u 25.3 2.1E+02 0.0045 23.9 5.5 63 12-74 57-121 (142)
451 PF02780 Transketolase_C: Tran 25.2 1.4E+02 0.003 23.9 4.6 35 13-49 8-42 (124)
452 PRK08558 adenine phosphoribosy 25.2 1.4E+02 0.0031 27.3 5.1 37 108-144 102-141 (238)
453 COG1052 LdhA Lactate dehydroge 25.1 2.9E+02 0.0062 26.7 7.3 105 274-420 147-252 (324)
454 PF06180 CbiK: Cobalt chelatas 25.0 86 0.0019 29.2 3.6 39 274-312 1-42 (262)
455 PRK04020 rps2P 30S ribosomal p 25.0 93 0.002 27.7 3.7 31 117-147 114-147 (204)
456 cd01715 ETF_alpha The electron 24.9 1.6E+02 0.0035 25.1 5.1 42 105-146 71-116 (168)
457 PRK12921 2-dehydropantoate 2-r 24.9 1E+02 0.0023 29.1 4.4 32 15-51 1-32 (305)
458 PF08357 SEFIR: SEFIR domain; 24.8 93 0.002 25.8 3.6 32 16-47 2-35 (150)
459 TIGR01286 nifK nitrogenase mol 24.7 1.1E+02 0.0024 31.7 4.8 35 108-144 428-462 (515)
460 cd00983 recA RecA is a bacter 24.5 2.2E+02 0.0049 27.5 6.4 38 17-54 58-95 (325)
461 PRK09444 pntB pyridine nucleot 24.5 1.1E+02 0.0023 30.8 4.3 40 14-53 306-348 (462)
462 PF04244 DPRP: Deoxyribodipyri 24.4 79 0.0017 28.7 3.2 26 27-52 47-72 (224)
463 COG0299 PurN Folate-dependent 24.4 2.6E+02 0.0056 24.7 6.1 102 293-421 69-172 (200)
464 PF03853 YjeF_N: YjeF-related 24.2 1.6E+02 0.0035 25.2 5.0 37 12-49 23-59 (169)
465 PRK13982 bifunctional SbtC-lik 24.2 99 0.0021 31.6 4.2 45 14-59 70-114 (475)
466 TIGR00853 pts-lac PTS system, 24.2 2E+02 0.0043 22.0 4.9 40 13-52 2-41 (95)
467 cd01974 Nitrogenase_MoFe_beta 24.2 1.5E+02 0.0032 30.1 5.4 36 107-144 367-402 (435)
468 TIGR00355 purH phosphoribosyla 24.1 2.2E+02 0.0047 29.3 6.4 85 29-125 11-99 (511)
469 cd01141 TroA_d Periplasmic bin 24.0 1.2E+02 0.0027 26.1 4.4 35 345-381 63-101 (186)
470 COG0297 GlgA Glycogen synthase 24.0 2.5E+02 0.0055 28.9 7.0 78 335-423 350-441 (487)
471 PRK06436 glycerate dehydrogena 24.0 4E+02 0.0086 25.5 8.0 63 274-364 123-185 (303)
472 PRK08155 acetolactate synthase 24.0 2.4E+02 0.0052 29.6 7.2 89 281-379 4-109 (564)
473 cd01147 HemV-2 Metal binding p 23.9 1.2E+02 0.0027 27.7 4.6 35 111-145 68-106 (262)
474 TIGR00750 lao LAO/AO transport 23.9 6.3E+02 0.014 23.9 11.0 42 13-54 33-74 (300)
475 TIGR02012 tigrfam_recA protein 23.8 4.1E+02 0.0088 25.7 8.0 39 16-54 57-95 (321)
476 cd00763 Bacterial_PFK Phosphof 23.7 68 0.0015 30.9 2.8 38 346-383 86-126 (317)
477 PRK00881 purH bifunctional pho 23.7 2.5E+02 0.0055 28.9 6.8 39 28-73 14-52 (513)
478 PRK08229 2-dehydropantoate 2-r 23.6 71 0.0015 30.9 3.0 33 15-52 3-35 (341)
479 cd01840 SGNH_hydrolase_yrhL_li 23.6 1.6E+02 0.0035 24.4 4.8 37 274-311 51-87 (150)
480 PRK08673 3-deoxy-7-phosphohept 23.6 4.3E+02 0.0093 25.7 8.2 32 371-403 261-298 (335)
481 PRK13235 nifH nitrogenase redu 23.4 1.3E+02 0.0029 28.0 4.7 37 15-51 2-38 (274)
482 COG2109 BtuR ATP:corrinoid ade 23.4 5.2E+02 0.011 22.8 9.9 97 17-127 31-133 (198)
483 KOG0832 Mitochondrial/chloropl 23.2 1.5E+02 0.0033 26.8 4.5 112 23-146 89-205 (251)
484 KOG2836 Protein tyrosine phosp 23.1 4.3E+02 0.0093 21.8 6.9 63 10-82 12-76 (173)
485 PF01656 CbiA: CobQ/CobB/MinD/ 23.1 1.4E+02 0.0031 25.7 4.6 38 17-54 1-39 (195)
486 COG2039 Pcp Pyrrolidone-carbox 23.1 3.5E+02 0.0076 23.8 6.6 21 104-124 47-67 (207)
487 TIGR02483 PFK_mixed phosphofru 23.1 74 0.0016 30.7 2.9 38 346-383 88-128 (324)
488 COG2086 FixA Electron transfer 23.0 1.6E+02 0.0035 27.4 5.0 40 107-146 101-147 (260)
489 PRK13236 nitrogenase reductase 23.0 1.4E+02 0.003 28.4 4.8 39 14-52 6-44 (296)
490 PRK14076 pnk inorganic polypho 22.9 1.1E+02 0.0025 32.1 4.5 53 350-424 348-404 (569)
491 PRK13869 plasmid-partitioning 22.9 1.4E+02 0.0031 29.8 5.0 38 15-52 121-160 (405)
492 PF03720 UDPG_MGDP_dh_C: UDP-g 22.8 1E+02 0.0022 24.0 3.2 30 29-58 17-46 (106)
493 cd01017 AdcA Metal binding pro 22.8 6.3E+02 0.014 23.6 9.3 41 105-145 208-251 (282)
494 PRK10490 sensor protein KdpD; 22.7 1.2E+02 0.0025 34.1 4.7 40 13-52 23-62 (895)
495 TIGR01380 glut_syn glutathione 22.6 95 0.0021 29.8 3.6 40 15-54 1-43 (312)
496 PRK10637 cysG siroheme synthas 22.6 8.3E+02 0.018 24.9 12.4 152 267-446 7-168 (457)
497 PRK12815 carB carbamoyl phosph 22.4 8E+02 0.017 28.3 11.3 40 13-52 6-51 (1068)
498 TIGR03453 partition_RepA plasm 22.4 1.3E+02 0.0029 29.7 4.7 39 14-52 103-143 (387)
499 cd01143 YvrC Periplasmic bindi 22.4 1.3E+02 0.0029 25.9 4.3 33 113-145 56-90 (195)
500 cd00501 Peptidase_C15 Pyroglut 22.3 3.3E+02 0.0071 23.9 6.7 26 16-41 2-29 (194)
No 1
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=8.2e-68 Score=521.40 Aligned_cols=449 Identities=58% Similarity=1.035 Sum_probs=347.9
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
|...+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+......+..+.+..++++..+++|++.+...+
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~ 80 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSE 80 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCccccccc
Confidence 34567899999999999999999999999999999999999987655543211121233444444444688776554444
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
........+..+.+...+.++++|++.+||+||+|+..|+..+|+++|||++.++++++...+.+..+.. .
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~-----~---- 151 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDFAHWIPEVARDFGLKTVKYVVVSASTIASMLVPGG-----E---- 151 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECCchhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccc-----c----
Confidence 4433345566667777888999998888999999988899999999999999999999987776653221 0
Q ss_pred cccCCCCCCCCCCccccccccccccccccc--CCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEE
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISF--PFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFL 247 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~ 247 (471)
...+.+++|.....++..++..+..... .......++.+.......++++++||+++||+++.++++...+++++.
T Consensus 152 --~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 229 (453)
T PLN02764 152 --LGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCRKKVLL 229 (453)
T ss_pred --CCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcCCcEEE
Confidence 0012244542110122222222111000 001123445555455677889999999999999999998755568999
Q ss_pred eccCCCCCC-CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChh
Q 012080 248 TGPVLHEPA-KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDG 326 (471)
Q Consensus 248 vGp~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~ 326 (471)
|||+..... ....+.+|.+|||++++++||||||||+...+.+++.+++.+|+.++.+|+|+++.+.+.......+|++
T Consensus 230 VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~ 309 (453)
T PLN02764 230 TGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEG 309 (453)
T ss_pred eccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcc
Confidence 999964321 1123568999999999999999999999999999999999999999999999999643322223359999
Q ss_pred HHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 327 FAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 327 ~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
|.+++++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.+..++.
T Consensus 310 f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~ 389 (453)
T PLN02764 310 FEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREET 389 (453)
T ss_pred hHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999747999998864211
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhccccccc
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSCEVH 469 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 469 (471)
+.+++++|+++|+++|.+++++|+.+|++|+++++.+++.|++.+.+++|++.++++....-|
T Consensus 390 ~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~~~~~ 452 (453)
T PLN02764 390 GWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVSGTSH 452 (453)
T ss_pred CccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC
Confidence 358999999999999987557899999999999999998899999999999999998876554
No 2
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-68 Score=526.38 Aligned_cols=436 Identities=58% Similarity=1.035 Sum_probs=343.2
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.+.||+++|++++||++|++.||+.|+++||+|||++++.+...+++.+..+..+++..++++..++++++.+...+...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 45799999999999999999999999999999999999988777655443333577888876544677766443223323
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcccc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAEL 172 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 172 (471)
.....+....+.+.+.+++++++.++|+||+|+..|+..+|+++|||++.++++++....+...+.. . .
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~-----~------~ 151 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRALRPDLIFFDFAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGG-----K------L 151 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECCcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCcc-----c------c
Confidence 3445556667788888999999889999999977899999999999999999998876553332221 0 0
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCC-chhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccC
Q 012080 173 AMPPAGYPSDTIVLRRHEARELTFISFPFGE-GMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPV 251 (471)
Q Consensus 173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~ 251 (471)
..+.+++|.....+...+++.+ . .... ...+..+.......++.+++||+++||+.+.++++..+.++++.|||+
T Consensus 152 ~~~~pglp~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl 227 (442)
T PLN02208 152 GVPPPGYPSSKVLFRENDAHAL---A-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPM 227 (442)
T ss_pred CCCCCCCCCcccccCHHHcCcc---c-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeec
Confidence 0122455532111222222221 1 1111 122232333445678999999999999999999988777899999999
Q ss_pred CCCCC-CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHh
Q 012080 252 LHEPA-KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAER 330 (471)
Q Consensus 252 ~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 330 (471)
..... ...++.+|.+|||++++++||||||||+..++.+++.+++.+++.++.+|+|+++.+.+.......+|++|.++
T Consensus 228 ~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r 307 (442)
T PLN02208 228 FPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEER 307 (442)
T ss_pred ccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHH
Confidence 75432 23467899999999988899999999999889999999999999999999999986532211223589999999
Q ss_pred hCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCccc
Q 012080 331 TKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFS 410 (471)
Q Consensus 331 ~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t 410 (471)
+++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++.++.+.++
T Consensus 308 ~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~ 387 (442)
T PLN02208 308 VKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFS 387 (442)
T ss_pred HhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCc
Confidence 99999999899999999999999999999999999999999999999999999999999987459999999753224599
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 411 KESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 411 ~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
+++|+++|+++|.+++++|+.+|+||+++++.+.+.|++.+.+++|++.++++
T Consensus 388 ~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 388 KESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 99999999999987556799999999999999988788889999999988664
No 3
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1e-67 Score=524.36 Aligned_cols=439 Identities=56% Similarity=1.007 Sum_probs=346.1
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.+.||+++|++++||++|++.||+.|+++|++|||++++.+...++..+..+..++|+.+++|..+++|++.+...+...
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 45799999999999999999999999999999999999988766654443333488887877766788876443333333
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcccc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAEL 172 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 172 (471)
.....+......+.+.+++++++.+||+||+|+..|+..+|+++|||++.++++++...+.+.++.. +.
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~-----------~~ 151 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDFVHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA-----------EL 151 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCchhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh-----------hc
Confidence 3344566667778888888888889999999987899999999999999999999988776655321 00
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCC
Q 012080 173 AMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVL 252 (471)
Q Consensus 173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~ 252 (471)
..+++++|.....+...... ++... ......+.+.......++.+++||+++||+.+.++++..++++++.|||+.
T Consensus 152 ~~~~pg~p~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~ 227 (446)
T PLN00414 152 GFPPPDYPLSKVALRGHDAN-VCSLF---ANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPML 227 (446)
T ss_pred CCCCCCCCCCcCcCchhhcc-cchhh---cccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccC
Confidence 01224444311001111111 11111 111233444445566789999999999999999999887666899999996
Q ss_pred CCCCC---CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHH
Q 012080 253 HEPAK---TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAE 329 (471)
Q Consensus 253 ~~~~~---~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 329 (471)
..... .....+|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++...+.....+.+|++|.+
T Consensus 228 ~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~ 307 (446)
T PLN00414 228 PEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEE 307 (446)
T ss_pred CCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHH
Confidence 43211 112356999999999999999999999999999999999999999999999998643322223459999999
Q ss_pred hhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcc
Q 012080 330 RTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWF 409 (471)
Q Consensus 330 ~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 409 (471)
++++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++++|+|+.+..++.+.+
T Consensus 308 r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~ 387 (446)
T PLN00414 308 RVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWF 387 (446)
T ss_pred HhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCcc
Confidence 99999999989999999999999999999999999999999999999999999999999999657999999975322359
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcccc
Q 012080 410 SKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSC 466 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 466 (471)
++++|+++++++|.+++++|+.||++|+++++.+.+.|++.+.+++|++.+.++..+
T Consensus 388 ~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~~~~ 444 (446)
T PLN00414 388 SKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENEVNN 444 (446)
T ss_pred CHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccc
Confidence 999999999999987657899999999999999988888667799999999776643
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.9e-67 Score=519.47 Aligned_cols=450 Identities=30% Similarity=0.507 Sum_probs=342.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC-CCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN-LHPDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
..+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+.+.. .....++++.+|++..+++|++.+...+.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~~ 83 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTDV 83 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCccccccc
Confidence 34579999999999999999999999999999999999998765554321 11224899999988767888764433333
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC-
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT- 168 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~- 168 (471)
......++..+.+...+.+++++++.++++||+| +..|+..+|+++|||++.++++++...+.+.++..+..++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 163 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRST 163 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCc
Confidence 2222245556667778888999988899999999 79999999999999999999988877665543321111111100
Q ss_pred ccccCCCCCC-CCCCcc-cccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeE
Q 012080 169 EAELAMPPAG-YPSDTI-VLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVF 246 (471)
Q Consensus 169 ~~~~~~~~~~-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~ 246 (471)
...... .++ +|.... .+...+++.+..-..........+.+.......++++++||+++||+.+.+.++..++++++
T Consensus 164 ~~~~~~-~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~~~~v~ 242 (472)
T PLN02670 164 AEDFTV-VPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLYRKPII 242 (472)
T ss_pred cccccC-CCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhhCCCeE
Confidence 001100 122 121100 01222222211100111111233334444556788999999999999999999887667899
Q ss_pred EeccCCCC--C--CCCC-C---hhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCC-C
Q 012080 247 LTGPVLHE--P--AKTP-S---EERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGA-S 317 (471)
Q Consensus 247 ~vGp~~~~--~--~~~~-~---~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-~ 317 (471)
.|||+... . .... . .+++.+|||++++++||||||||+..++.+++.+++.+|+.++.+|+|+++...+. .
T Consensus 243 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~ 322 (472)
T PLN02670 243 PIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQ 322 (472)
T ss_pred EEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccc
Confidence 99999642 1 1110 1 15799999999888999999999999999999999999999999999999853221 1
Q ss_pred cccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 012080 318 TVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV 397 (471)
Q Consensus 318 ~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 397 (471)
...+.+|++|.+++++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++ ++|+
T Consensus 323 ~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~-~~g~ 401 (472)
T PLN02670 323 NALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLH-GKKL 401 (472)
T ss_pred chhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHH-HcCe
Confidence 112359999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eEEeeccc-CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhccc
Q 012080 398 AVEVEREE-NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVS 465 (471)
Q Consensus 398 G~~l~~~~-~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 465 (471)
|+.+...+ .+.++.++|+++|+++|.+ ++|++||+||+++++++++++...++++.|++++.+..+
T Consensus 402 Gv~l~~~~~~~~~~~e~i~~av~~vm~~--~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 468 (472)
T PLN02670 402 GLEVPRDERDGSFTSDSVAESVRLAMVD--DAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENRS 468 (472)
T ss_pred eEEeeccccCCcCcHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhcc
Confidence 99997532 2458999999999999975 368899999999999999999999999999999988763
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.2e-65 Score=508.11 Aligned_cols=451 Identities=25% Similarity=0.402 Sum_probs=336.9
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
...+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+++.......++++.+|+|...++|++.+...+.
T Consensus 6 ~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~ 85 (477)
T PLN02863 6 KPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDL 85 (477)
T ss_pred cCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhc
Confidence 35568999999999999999999999999999999999999887666543211124888898887667888776554444
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCC
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPV 167 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (471)
+......+..+.....+.+.+++++. ++++||+| +.+|+..+|+++|||++.+++++++..+.+.+...........
T Consensus 86 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~ 165 (477)
T PLN02863 86 PPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINP 165 (477)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccc
Confidence 43444456666667777888888763 67999999 7999999999999999999999998877655433211100000
Q ss_pred CccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC-CCeE
Q 012080 168 TEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN-KPVF 246 (471)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~v~ 246 (471)
...+.......+|.... ++..+++.+..-..........+.+.......++++++||+++||++++++++..++ ++++
T Consensus 166 ~~~~~~~~~~~iPg~~~-~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~ 244 (477)
T PLN02863 166 DDQNEILSFSKIPNCPK-YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRVW 244 (477)
T ss_pred cccccccccCCCCCCCC-cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCeE
Confidence 00000011112332111 222222221110001111223333333334567889999999999999999988765 6899
Q ss_pred EeccCCCCCCC-----------CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCC
Q 012080 247 LTGPVLHEPAK-----------TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTG 315 (471)
Q Consensus 247 ~vGp~~~~~~~-----------~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 315 (471)
.|||+...... ...+++|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|+|+++...+
T Consensus 245 ~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~ 324 (477)
T PLN02863 245 AVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVN 324 (477)
T ss_pred EeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence 99999643210 0124679999999988899999999999999999999999999999999999985432
Q ss_pred CCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh
Q 012080 316 ASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL 395 (471)
Q Consensus 316 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 395 (471)
.......+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++++
T Consensus 325 ~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 404 (477)
T PLN02863 325 EESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDEL 404 (477)
T ss_pred cccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhh
Confidence 21111248999999988999999899999999999999999999999999999999999999999999999999977579
Q ss_pred cceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHHhcccc
Q 012080 396 KVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMRGLVSC 466 (471)
Q Consensus 396 G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 466 (471)
|+|+.+.....+.++.++|+++|+++|.+ +++||+||++++++.+++ |++.+.+++|++.+..+...
T Consensus 405 gvG~~~~~~~~~~~~~~~v~~~v~~~m~~----~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~~~ 475 (477)
T PLN02863 405 KVAVRVCEGADTVPDSDELARVFMESVSE----NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELGLE 475 (477)
T ss_pred ceeEEeccCCCCCcCHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhccC
Confidence 99999954222347999999999999931 249999999999985544 77779999999999877643
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.1e-62 Score=489.31 Aligned_cols=433 Identities=23% Similarity=0.360 Sum_probs=322.2
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+...+.+.......++++.+|++..++++....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~~------- 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPSA------- 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCCc-------
Confidence 46999999999999999999999998 7899999999998765442211111248899988765445542111
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc-cccCCCCCCCCC
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV-PARNVPKDRPVT 168 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-p~~~~~~~~~~~ 168 (471)
.....+......+.+.+++++++. +|++||+| +.+|+..+|+++|||++.++++.+...+.+.+ +...........
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~ 157 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHT 157 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccc
Confidence 111233334455667788888764 78999999 79999999999999999999998877654432 221111110000
Q ss_pred ccccCCCCCCCCCCcccccccccccccc-cccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH------c
Q 012080 169 EAELAMPPAGYPSDTIVLRRHEARELTF-ISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ------Y 241 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~------~ 241 (471)
. ...+..+|.... ++. ..++. +..........+.+.......++++++||+++||+.++++++.. .
T Consensus 158 ~---~~~~~~iPg~~~-l~~---~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~ 230 (481)
T PLN02992 158 V---QRKPLAMPGCEP-VRF---EDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVA 230 (481)
T ss_pred c---CCCCcccCCCCc-cCH---HHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccccc
Confidence 0 000122332211 222 22321 11111112344455555667789999999999999999988652 1
Q ss_pred CCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCC-----
Q 012080 242 NKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGA----- 316 (471)
Q Consensus 242 ~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~----- 316 (471)
.++++.|||+.........+.+|.+||+++++++||||||||+..++.+++++++.+|+.++.+|+|++++..+.
T Consensus 231 ~~~v~~VGPl~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~ 310 (481)
T PLN02992 231 RVPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSA 310 (481)
T ss_pred CCceEEecCccCCcCCCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccc
Confidence 257999999975422223345799999999888999999999999999999999999999999999999753210
Q ss_pred ----------CcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchh
Q 012080 317 ----------STVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQIL 386 (471)
Q Consensus 317 ----------~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 386 (471)
+...+.+|++|.++++++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 311 ~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 390 (481)
T PLN02992 311 YFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNM 390 (481)
T ss_pred cccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHH
Confidence 1112358999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC------CchhHHHHHHHHHH
Q 012080 387 NTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP------GFVSGYIDKFVQNM 460 (471)
Q Consensus 387 na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~------~~~~~~i~~~~~~~ 460 (471)
||+++++++|+|+.++... +.++.++|+++|+++|.++ +|++++++|+++++..++. |++.+.++.|++.+
T Consensus 391 na~~~~~~~g~gv~~~~~~-~~~~~~~l~~av~~vm~~~--~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~ 467 (481)
T PLN02992 391 NAALLSDELGIAVRSDDPK-EVISRSKIEALVRKVMVEE--EGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKEC 467 (481)
T ss_pred HHHHHHHHhCeeEEecCCC-CcccHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 9999944999999997521 3599999999999999863 7889999999999986532 44557888888777
Q ss_pred Hhc
Q 012080 461 RGL 463 (471)
Q Consensus 461 ~~~ 463 (471)
...
T Consensus 468 ~~~ 470 (481)
T PLN02992 468 QRF 470 (481)
T ss_pred HHH
Confidence 543
No 7
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-62 Score=491.03 Aligned_cols=448 Identities=24% Similarity=0.381 Sum_probs=330.6
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC----CCCCCeEEEEecCCCC-CCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN----LHPDLITLHPLTVPHV-DGLPAGAET 86 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~-~~~~~~~~~ 86 (471)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.... .....++|+.+|+|.. +++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 44579999999999999999999999999999999999998765443321 0112389999998754 588876444
Q ss_pred CCCCCh-hhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCC
Q 012080 87 ASDVPM-SSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVP 162 (471)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~ 162 (471)
..+.+. .+...+........+.+.++|++. ++|+||+| +..|+..+|+++|||.+.|++++.+....+.....+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~ 165 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNA 165 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcc
Confidence 333332 344445555666778888888763 68999999 79999999999999999999888876554321111111
Q ss_pred CCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC
Q 012080 163 KDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN 242 (471)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 242 (471)
....... ..+...+++|... .+...+++.. .... .....+..........++++++||+++||+.++++++..++
T Consensus 166 ~~~~~~~-~~~~~iPg~p~~~-~l~~~dlp~~--~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 166 HLSVSSD-SEPFVVPGMPQSI-EITRAQLPGA--FVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred cccCCCC-CceeecCCCCccc-cccHHHCChh--hcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 0000000 0011123333211 1222222211 1111 11112222222222456789999999999999999988777
Q ss_pred CCeEEeccCCCCCC----------CCC-ChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeC
Q 012080 243 KPVFLTGPVLHEPA----------KTP-SEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALK 311 (471)
Q Consensus 243 ~~v~~vGp~~~~~~----------~~~-~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (471)
++++.|||+..... ... ...+|.+|||++++++||||||||......+++.+++.+|+.++.+|+|+++
T Consensus 241 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r 320 (491)
T PLN02534 241 KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIK 320 (491)
T ss_pred CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 78999999964210 001 2346999999998889999999999999999999999999999999999998
Q ss_pred CCCCCCcccc-cCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHH
Q 012080 312 PPTGASTVEE-AFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRL 390 (471)
Q Consensus 312 ~~~~~~~~~~-~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~ 390 (471)
.+.......+ .+|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++
T Consensus 321 ~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~ 400 (491)
T PLN02534 321 TGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKL 400 (491)
T ss_pred cCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHH
Confidence 4321111111 368999888888999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEeecc-------cC---CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHH
Q 012080 391 LAEELKVAVEVERE-------EN---GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKF 456 (471)
Q Consensus 391 v~~~~G~G~~l~~~-------~~---~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~ 456 (471)
+++.+|+|+.+..+ +. ..+++++|+++|+++|.+.+++|+++|+||++|++++++. |++.+.+++|
T Consensus 401 ~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~f 480 (491)
T PLN02534 401 IVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSIL 480 (491)
T ss_pred HHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 98899999988521 00 1489999999999999743568899999999999988776 5666889999
Q ss_pred HHHHHhcc
Q 012080 457 VQNMRGLV 464 (471)
Q Consensus 457 ~~~~~~~~ 464 (471)
++.+..+-
T Consensus 481 v~~i~~~~ 488 (491)
T PLN02534 481 IQDVLKQQ 488 (491)
T ss_pred HHHHHHHh
Confidence 99987553
No 8
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.9e-62 Score=493.62 Aligned_cols=445 Identities=23% Similarity=0.386 Sum_probs=326.5
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCC-----CC-CCeEEEEecCCCC-CCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNL-----HP-DLITLHPLTVPHV-DGLPAG 83 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~-----~~-~~~~~~~i~~~~~-~~~~~~ 83 (471)
..++.||+++|++++||++|++.||+.|++||++|||++++.+...+++.+. .+ ..+.+..++++.. +++|++
T Consensus 2 ~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 2 NHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 4557899999999999999999999999999999999999998766654331 11 1245666666543 356665
Q ss_pred CCCCCCC-------ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhh
Q 012080 84 AETASDV-------PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATAL 155 (471)
Q Consensus 84 ~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 155 (471)
.+..... ...+...+....+.+.+.+++++++.+||+||+| +..|+..+|+++|||.+.+++++++..+.+.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~ 161 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASY 161 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHH
Confidence 3332211 1123333445566777888888888899999999 7999999999999999999998876654332
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHH
Q 012080 156 VPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCE 235 (471)
Q Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 235 (471)
....+..........+ ....+++|.... +....++.. ........++..........+++++||++++|++..+
T Consensus 162 ~~~~~~~~~~~~~~~~-~~~~pg~p~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 162 CIRVHKPQKKVASSSE-PFVIPDLPGDIV-ITEEQINDA----DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHhcccccccCCCCc-eeeCCCCCCccc-cCHHhcCCC----CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 1111100000000000 001234442111 111111111 1111122333344345667889999999999999899
Q ss_pred HHHHHcCCCeEEeccCCCCCC--------C---CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCC
Q 012080 236 YIARQYNKPVFLTGPVLHEPA--------K---TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGL 304 (471)
Q Consensus 236 ~~~~~~~~~v~~vGp~~~~~~--------~---~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~ 304 (471)
.+++....++++|||+..... . ...+.+|.+||++++++++|||||||+...+.+++.+++.+|+.++.
T Consensus 236 ~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~ 315 (482)
T PLN03007 236 FYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ 315 (482)
T ss_pred HHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCC
Confidence 888777668999999753211 0 11246799999999889999999999988889999999999999999
Q ss_pred ceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccc
Q 012080 305 CFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQ 384 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 384 (471)
+|+|+++...........+|++|.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 316 ~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ 395 (482)
T PLN03007 316 NFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQ 395 (482)
T ss_pred CEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhh
Confidence 99999986422211122489999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcceEEeecc-----cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHH
Q 012080 385 ILNTRLLAEELKVAVEVERE-----ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDK 455 (471)
Q Consensus 385 ~~na~~v~~~~G~G~~l~~~-----~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~ 455 (471)
+.||+++++.+++|+.+... +.+.+++++|+++|+++|.+ ++|++||+||+++++.+++. |++.+.++.
T Consensus 396 ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~--~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~ 473 (482)
T PLN03007 396 FYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVG--EEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNK 473 (482)
T ss_pred hhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999987567777776421 12358999999999999986 47889999999999998777 556688999
Q ss_pred HHHHHHhc
Q 012080 456 FVQNMRGL 463 (471)
Q Consensus 456 ~~~~~~~~ 463 (471)
|++.+.++
T Consensus 474 ~v~~~~~~ 481 (482)
T PLN03007 474 FMEELNSR 481 (482)
T ss_pred HHHHHHhc
Confidence 99888753
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-61 Score=481.53 Aligned_cols=425 Identities=22% Similarity=0.366 Sum_probs=311.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. ....++++..+| +++|++... ..
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~~~~~i~~~~ip----~glp~~~~~--~~-- 74 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-DDFTDFQFVTIP----ESLPESDFK--NL-- 74 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-cCCCCeEEEeCC----CCCCccccc--cc--
Confidence 55799999999999999999999999999999999999976421 11 111248888887 567663111 11
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhC------CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCC
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAA------KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDR 165 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~------~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~ 165 (471)
....++....+.....++++|++. ++++||+| +..|+..+|+++|||.+.+++++++..+.+.+...+...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~ 154 (451)
T PLN02410 75 GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNV 154 (451)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccC
Confidence 122333333444555566666542 46999999 79999999999999999999999877654443211111100
Q ss_pred C-C-Cc--cccCCCCCCCCCCcccccccccccccccc-cCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH
Q 012080 166 P-V-TE--AELAMPPAGYPSDTIVLRRHEARELTFIS-FPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ 240 (471)
Q Consensus 166 ~-~-~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 240 (471)
. . .. .+.....+++|. +.. +.++... .........+... .....++++++||+++||+.+.++++..
T Consensus 155 ~~~~~~~~~~~~~~iPg~~~----~~~---~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~ 226 (451)
T PLN02410 155 LAPLKEPKGQQNELVPEFHP----LRC---KDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQ 226 (451)
T ss_pred CCCccccccCccccCCCCCC----CCh---HHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhc
Confidence 0 0 00 000001233332 222 2222111 1111112222222 2345788999999999999999999887
Q ss_pred cCCCeEEeccCCCCCC-CC---CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCC
Q 012080 241 YNKPVFLTGPVLHEPA-KT---PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGA 316 (471)
Q Consensus 241 ~~~~v~~vGp~~~~~~-~~---~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 316 (471)
++++++.|||+..... .. ....+|.+|||++++++||||||||....+.+++.+++.+|+.++.+|+|+++.+...
T Consensus 227 ~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~ 306 (451)
T PLN02410 227 LQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR 306 (451)
T ss_pred cCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc
Confidence 7778999999964321 11 1224578999999888999999999999999999999999999999999999853211
Q ss_pred -CcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh
Q 012080 317 -STVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL 395 (471)
Q Consensus 317 -~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 395 (471)
.+....+|++|.++..+++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+
T Consensus 307 ~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 385 (451)
T PLN02410 307 GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVW 385 (451)
T ss_pred ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHh
Confidence 1111238999999987666 45579999999999999999999999999999999999999999999999999998566
Q ss_pred cceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHHhc
Q 012080 396 KVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 396 G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~~~ 463 (471)
|+|+.+. . .+++++|+++|+++|.++ +|++|+++|+++++.+++. |++.+.+++|++.+..+
T Consensus 386 ~~G~~~~-~---~~~~~~v~~av~~lm~~~--~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 386 KIGIQVE-G---DLDRGAVERAVKRLMVEE--EGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred CeeEEeC-C---cccHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999997 2 399999999999999864 4889999999999998853 66778899999888653
No 10
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-61 Score=479.25 Aligned_cols=415 Identities=23% Similarity=0.400 Sum_probs=314.5
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCC-CCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAG-AETASD 89 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~ 89 (471)
..++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ....++++.+| +++|++ .+..
T Consensus 2 ~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~--~~~~i~~~~ip----dglp~~~~~~~-- 73 (449)
T PLN02173 2 EKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD--PSSPISIATIS----DGYDQGGFSSA-- 73 (449)
T ss_pred CCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC--CCCCEEEEEcC----CCCCCcccccc--
Confidence 45667999999999999999999999999999999999999765544221 11249999987 577763 2221
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhC----CC-cEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCC
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAA----KP-RLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPK 163 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~ 163 (471)
.....++....+...+.++++|++. +| |+||+| +.+|+..+|+++|||.+.+++++++....+..+... .
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~--~ 149 (449)
T PLN02173 74 --GSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYIN--N 149 (449)
T ss_pred --cCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhc--c
Confidence 1222444444445667777777653 45 999999 799999999999999999999877665544332210 0
Q ss_pred CCCCCccccCCCCCCCCCCcccccccccccccccccC---CCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH
Q 012080 164 DRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFP---FGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ 240 (471)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 240 (471)
+ +...+.+++|. .+...++..... .......+.+.......++++++||+++||+++.+.++..
T Consensus 150 ~------~~~~~~pg~p~-------l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 216 (449)
T PLN02173 150 G------SLTLPIKDLPL-------LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV 216 (449)
T ss_pred C------CccCCCCCCCC-------CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc
Confidence 0 01111234442 222333321111 1112233334445567789999999999999999988753
Q ss_pred cCCCeEEeccCCCCC-------CC-C--------CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCC
Q 012080 241 YNKPVFLTGPVLHEP-------AK-T--------PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGL 304 (471)
Q Consensus 241 ~~~~v~~vGp~~~~~-------~~-~--------~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~ 304 (471)
++++.|||+.+.. .. . ...++|.+||++++++++|||||||+...+.+++.+++.+| ++.
T Consensus 217 --~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~ 292 (449)
T PLN02173 217 --CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNF 292 (449)
T ss_pred --CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCC
Confidence 3799999996320 00 0 12345999999998889999999999999999999999998 888
Q ss_pred ceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccc
Q 012080 305 CFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQ 384 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 384 (471)
+|+|+++... ...+|+++.++..+.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 293 ~flWvvr~~~-----~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 293 SYLWVVRASE-----ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred CEEEEEeccc-----hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 9999998521 12388889888877888888999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhcceEEeeccc-CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC----CCchhHHHHHHHHH
Q 012080 385 ILNTRLLAEELKVAVEVEREE-NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS----PGFVSGYIDKFVQN 459 (471)
Q Consensus 385 ~~na~~v~~~~G~G~~l~~~~-~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~----~~~~~~~i~~~~~~ 459 (471)
+.||+++++.+|+|+.+..++ .+.++.++|+++|+++|.+ ++|+.+|+||++++++.++ .|++.+.+++|++.
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~--~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~ 445 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEG--EKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSK 445 (449)
T ss_pred hHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 999999996679999987532 1347999999999999975 4678999999999999884 36667889999887
Q ss_pred HH
Q 012080 460 MR 461 (471)
Q Consensus 460 ~~ 461 (471)
+.
T Consensus 446 ~~ 447 (449)
T PLN02173 446 IQ 447 (449)
T ss_pred hc
Confidence 74
No 11
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-61 Score=477.82 Aligned_cols=434 Identities=24% Similarity=0.373 Sum_probs=318.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhh--ccCC-CC--CCCeEEEEecCCCCCCC-CCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQL--QHFN-LH--PDLITLHPLTVPHVDGL-PAGAE 85 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~--~~~~-~~--~~~~~~~~i~~~~~~~~-~~~~~ 85 (471)
++.||+++|++++||++|++.||+.|+.+ |..||++++..+.... .... .. ...++++.+|++..+++ +.+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~-- 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD-- 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC--
Confidence 35699999999999999999999999977 9999999877654322 1101 11 11489999986543333 111
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCc-eEEEecchhHHHHHh-hccccC
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIK-CIKYNVVCAASIATA-LVPARN 160 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~-~~p~~~ 160 (471)
. .....+......+.+.++++|++. ++++||+| +.+|+..+|+++||| .+.++++.++....+ ..|...
T Consensus 80 -----~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 80 -----A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred -----c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 1 222334445566778888888865 68999999 799999999999999 577777777665433 322211
Q ss_pred CCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH
Q 012080 161 VPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ 240 (471)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 240 (471)
....... .+...+ ..+|.... +...+++.. +..........+.+.......++++++||+++||+..++.+++.
T Consensus 154 ~~~~~~~--~~~~~~-~~vPg~p~-l~~~dlp~~--~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~ 227 (470)
T PLN03015 154 TVVEGEY--VDIKEP-LKIPGCKP-VGPKELMET--MLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALRED 227 (470)
T ss_pred ccccccc--CCCCCe-eeCCCCCC-CChHHCCHh--hcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhh
Confidence 0000000 000011 12232111 333333221 11111111222223334567899999999999999999999875
Q ss_pred c------CCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCC
Q 012080 241 Y------NKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPT 314 (471)
Q Consensus 241 ~------~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 314 (471)
+ .++++.|||+.........+++|.+|||++++++||||||||+..++.+++.+++.+|+.++++|+|+++...
T Consensus 228 ~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~ 307 (470)
T PLN03015 228 MELNRVMKVPVYPIGPIVRTNVHVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPA 307 (470)
T ss_pred cccccccCCceEEecCCCCCcccccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCc
Confidence 2 2579999999743221223457999999998899999999999999999999999999999999999997532
Q ss_pred C--------CCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchh
Q 012080 315 G--------ASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQIL 386 (471)
Q Consensus 315 ~--------~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 386 (471)
. .++..+.+|++|.++.++.++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 308 ~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~ 387 (470)
T PLN03015 308 SYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWM 387 (470)
T ss_pred cccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHH
Confidence 1 11123358999999999999999899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeec-ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHH
Q 012080 387 NTRLLAEELKVAVEVER-EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNM 460 (471)
Q Consensus 387 na~~v~~~~G~G~~l~~-~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~ 460 (471)
||+++++.+|+|+.+.. ...+.+++++|+++|+++|...+++|+.+|+||++|+++.+++ |++.+.++.+++.+
T Consensus 388 na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 388 NATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 99999559999999952 1124699999999999999632478999999999999998776 55668888888765
No 12
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.6e-60 Score=473.61 Aligned_cols=433 Identities=24% Similarity=0.389 Sum_probs=312.6
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC----C--CC---CCeEEEEecCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN----L--HP---DLITLHPLTVPHVDGLPAG 83 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~----~--~~---~~~~~~~i~~~~~~~~~~~ 83 (471)
...||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.. . .+ ..++|..+| +++|++
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p----dglp~~ 81 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE----DGWAED 81 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC----CCCCCC
Confidence 3469999999999999999999999999999999999997665543210 0 01 124454444 567665
Q ss_pred CCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhC----CC-cEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcc
Q 012080 84 AETASDVPMSSINLLVIAMDRCRGQVEAVIKAA----KP-RLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVP 157 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~-Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p 157 (471)
.+.. .+...++..........++++|++. +| ++||+| +..|+..+|+++|||.+.+++++++..+.+.+.
T Consensus 82 ~~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 82 DPRR----QDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred cccc----cCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHH
Confidence 3321 1222344443334566677766642 44 999999 799999999999999999999998776644332
Q ss_pred -ccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHH
Q 012080 158 -ARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEY 236 (471)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 236 (471)
.+...... ....+.....+++|. +...+++.+..-...+......+.+.......++++++|||++||+++++.
T Consensus 158 ~~~~~~~~~-~~~~~~~~~iPglp~----l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 232 (480)
T PLN02555 158 YHGLVPFPT-ETEPEIDVQLPCMPL----LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDY 232 (480)
T ss_pred hhcCCCccc-ccCCCceeecCCCCC----cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHH
Confidence 21111000 000000011233332 233233322110001111223344444556778899999999999999998
Q ss_pred HHHHcCCCeEEeccCCCCC----CC-----CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceE
Q 012080 237 IARQYNKPVFLTGPVLHEP----AK-----TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFL 307 (471)
Q Consensus 237 ~~~~~~~~v~~vGp~~~~~----~~-----~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~ 307 (471)
++... +++.|||+.... .. ...+++|.+||+++++++||||||||+...+.+++.+++.+|+.++.+||
T Consensus 233 l~~~~--~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~fl 310 (480)
T PLN02555 233 MSKLC--PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFL 310 (480)
T ss_pred HhhCC--CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEE
Confidence 87644 399999996421 10 12346799999999888999999999999999999999999999999999
Q ss_pred EEeCCCCCCCcc-cccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchh
Q 012080 308 IALKPPTGASTV-EEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQIL 386 (471)
Q Consensus 308 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 386 (471)
|+++...+.... ...+|+++.++..+ |.++.+|+||.+||.|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 311 W~~~~~~~~~~~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~ 389 (480)
T PLN02555 311 WVMRPPHKDSGVEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVT 389 (480)
T ss_pred EEEecCcccccchhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHH
Confidence 999843211111 12478888877644 4566689999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeecc--cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHH
Q 012080 387 NTRLLAEELKVAVEVERE--ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNM 460 (471)
Q Consensus 387 na~~v~~~~G~G~~l~~~--~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~ 460 (471)
||+++++.+|+|+.+... ..+.+++++|+++|+++|.+ ++|+++|+||++|+++.++. |++.+.+++|++.+
T Consensus 390 Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~--~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i 467 (480)
T PLN02555 390 DAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVG--EKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKL 467 (480)
T ss_pred HHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999999567999999521 11458999999999999975 47889999999999996655 66778999999998
Q ss_pred Hhc
Q 012080 461 RGL 463 (471)
Q Consensus 461 ~~~ 463 (471)
.+.
T Consensus 468 ~~~ 470 (480)
T PLN02555 468 VRK 470 (480)
T ss_pred Hhc
Confidence 765
No 13
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.5e-60 Score=472.98 Aligned_cols=423 Identities=23% Similarity=0.378 Sum_probs=308.1
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNK--LAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (471)
...+.||+++|++++||++|++.||+. |++||++|||++++.+...++..+.....+++..++ +++|++..
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~----~glp~~~~--- 77 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFS----DGLPKDDP--- 77 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECC----CCCCCCcc---
Confidence 445679999999999999999999999 569999999999998876664433211235555554 56766531
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcc-ccCCCCCCC
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVP-ARNVPKDRP 166 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p-~~~~~~~~~ 166 (471)
.....++....+...+.+++++++.+||+||+| +..|+..+|+++|||.+.+++.++.....+.+. ... ...
T Consensus 78 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~---~~~ 151 (456)
T PLN02210 78 ---RAPETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT---NSF 151 (456)
T ss_pred ---cCHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc---CCC
Confidence 122234444444556778888888899999999 799999999999999999988877665544321 111 000
Q ss_pred CCccccCCCCCCCCCCcccccccccccccc-cccCCCCch-hHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTF-ISFPFGEGM-SFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKP 244 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 244 (471)
....+.. .+..+|. +.......++. +...+.... .+..+........+++++||++++|+++++.+++ . ++
T Consensus 152 ~~~~~~~-~~~~~Pg----l~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~ 224 (456)
T PLN02210 152 PDLEDLN-QTVELPA----LPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KP 224 (456)
T ss_pred CcccccC-CeeeCCC----CCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CC
Confidence 0000000 0011222 11122233332 112222111 2333443445667899999999999999998876 3 47
Q ss_pred eEEeccCCCC-----CCC----------CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEE
Q 012080 245 VFLTGPVLHE-----PAK----------TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIA 309 (471)
Q Consensus 245 v~~vGp~~~~-----~~~----------~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~ 309 (471)
+++|||+... ... +..+.+|.+||++++++++|||||||....+.+++++++.+|+.++.+|+|+
T Consensus 225 v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~ 304 (456)
T PLN02210 225 VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWV 304 (456)
T ss_pred EEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 9999999641 110 1234568999999988899999999999899999999999999999999999
Q ss_pred eCCCCCCCcccccCChhHHHhhC-CCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhH
Q 012080 310 LKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNT 388 (471)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 388 (471)
++..... ..++.+.++.. +.+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 305 ~~~~~~~-----~~~~~~~~~~~~~~g-~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na 378 (456)
T PLN02210 305 IRPKEKA-----QNVQVLQEMVKEGQG-VVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDA 378 (456)
T ss_pred EeCCccc-----cchhhHHhhccCCCe-EEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHH
Confidence 9843111 12344555543 445 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEeeccc-CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHH
Q 012080 389 RLLAEELKVAVEVEREE-NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMR 461 (471)
Q Consensus 389 ~~v~~~~G~G~~l~~~~-~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~ 461 (471)
+++++.+|+|+.+..++ .+.+++++|+++|+++|.+ ++|+++|+||++|++..++. |++.+.+++|++.+.
T Consensus 379 ~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~--~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 379 RLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEG--PAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99993499999997421 2459999999999999975 46888999999999988766 556688899988774
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=7.8e-60 Score=473.48 Aligned_cols=433 Identities=25% Similarity=0.368 Sum_probs=318.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCchh----hhccC----CCCCCCeEEEEecCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG----HKITILLPRKAQT----QLQHF----NLHPDLITLHPLTVPHVDGLP 81 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG----h~Vt~~~~~~~~~----~~~~~----~~~~~~~~~~~i~~~~~~~~~ 81 (471)
+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. .+... ......++++.+|... ++
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---~p 79 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---PP 79 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC---CC
Confidence 45999999999999999999999999997 7899999876422 22211 0001148899888431 22
Q ss_pred CCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcc-
Q 012080 82 AGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVP- 157 (471)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p- 157 (471)
++.+ ....++......+.+.+++++++. ++++||+| +..|+..+|+++|||++.|+++++...+.+.+.
T Consensus 80 ~~~e-------~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 80 TDAA-------GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred Cccc-------cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 2211 122344445556677788888775 46999999 799999999999999999999999877655443
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccc-cCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHH
Q 012080 158 ARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFIS-FPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEY 236 (471)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 236 (471)
...................+++|. ++. ..++... .........+.+.......++++++||+++||+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~iPGlp~----l~~---~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 225 (480)
T PLN00164 153 ALDEEVAVEFEEMEGAVDVPGLPP----VPA---SSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAA 225 (480)
T ss_pred hhcccccCcccccCcceecCCCCC----CCh---HHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHH
Confidence 211100000000000000123321 222 2333111 11111122333334456678899999999999999999
Q ss_pred HHHHc------CCCeEEeccCCCCC---CCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceE
Q 012080 237 IARQY------NKPVFLTGPVLHEP---AKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFL 307 (471)
Q Consensus 237 ~~~~~------~~~v~~vGp~~~~~---~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~ 307 (471)
++... .++++.|||+.... .....+++|.+||+++++++||||||||+...+.+++.+++.+|+.++.+|+
T Consensus 226 ~~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 226 IADGRCTPGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred HHhccccccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 97752 15799999997321 1123456799999999888999999999988999999999999999999999
Q ss_pred EEeCCCCC-------CCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc
Q 012080 308 IALKPPTG-------ASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH 380 (471)
Q Consensus 308 ~~~~~~~~-------~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~ 380 (471)
|+++.... .......+|++|.++++++++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~ 385 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPL 385 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCc
Confidence 99985321 11122348999999999999999899999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHhhcceEEeeccc--CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHH
Q 012080 381 LGDQILNTRLLAEELKVAVEVEREE--NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYID 454 (471)
Q Consensus 381 ~~DQ~~na~~v~~~~G~G~~l~~~~--~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~ 454 (471)
++||+.||+++++++|+|+.+..++ .+.+++++|+++|+++|.+++++|+.+|+||+++++++++. |++.+.++
T Consensus 386 ~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~ 465 (480)
T PLN00164 386 YAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQ 465 (480)
T ss_pred cccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999998764799999986421 13479999999999999875346889999999999998776 45668889
Q ss_pred HHHHHHHhc
Q 012080 455 KFVQNMRGL 463 (471)
Q Consensus 455 ~~~~~~~~~ 463 (471)
+|++.+..-
T Consensus 466 ~~v~~~~~~ 474 (480)
T PLN00164 466 RLAREIRHG 474 (480)
T ss_pred HHHHHHHhc
Confidence 998888543
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.5e-60 Score=470.67 Aligned_cols=420 Identities=20% Similarity=0.303 Sum_probs=303.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
+.||+++|++++||++|++.||+.|+.+|+.||+++++.+...+.+......+++++.+| ++++++. +..
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp----~g~~~~~------~~~ 75 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSIS----DGQDDDP------PRD 75 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECC----CCCCCCc------ccc
Confidence 369999999999999999999999999999999999998766554431111248898887 3443221 112
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCC----CcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC-C
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAK----PRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP-V 167 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~----~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~-~ 167 (471)
+..++......+.+.+++++++.. +++||+| +..|+..+|+++|||.+.++++.+...+.+.+...+...+.. .
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 222222222356777777777642 3799999 799999999999999999999888665544322111111100 0
Q ss_pred C-ccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH----cC
Q 012080 168 T-EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ----YN 242 (471)
Q Consensus 168 ~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~----~~ 242 (471)
. ......+...+|.... +...+++.+.............+.+..+....++++++||+++||+...+..... ..
T Consensus 156 ~~~~~~~~~~~~~Pg~~~-l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 234 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPL-LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQN 234 (448)
T ss_pred ccccccccccccCCCCCC-CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccC
Confidence 0 0000000012222111 2222222221100001112344555555667788999999999999888866532 34
Q ss_pred CCeEEeccCCCCCC-----C--CCChhhhhhccCCCCCCcEEEEEeCccc-cCCHHHHHHHHHHHHhcCCceEEEeCCCC
Q 012080 243 KPVFLTGPVLHEPA-----K--TPSEERWDKWLGGFERSSVVYCAFGSQI-ILEKKQFQELLLGLELTGLCFLIALKPPT 314 (471)
Q Consensus 243 ~~v~~vGp~~~~~~-----~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 314 (471)
++++.|||+..... . .+.+.+|.+||++++++++|||||||+. ..+.+++++++.+|+.++.+|||+++.+.
T Consensus 235 ~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~ 314 (448)
T PLN02562 235 PQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW 314 (448)
T ss_pred CCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc
Confidence 68999999975421 1 1223457799999988899999999986 57889999999999999999999997421
Q ss_pred CCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 012080 315 GASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE 394 (471)
Q Consensus 315 ~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~ 394 (471)
. ..+|++|.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.
T Consensus 315 ~-----~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~ 388 (448)
T PLN02562 315 R-----EGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDV 388 (448)
T ss_pred h-----hhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 1 238888887764 4567778999999999999999999999999999999999999999999999999999845
Q ss_pred hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC---CchhHHHHHHHHHH
Q 012080 395 LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP---GFVSGYIDKFVQNM 460 (471)
Q Consensus 395 ~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~---~~~~~~i~~~~~~~ 460 (471)
+|+|+.+.. +++++|+++|+++|.++ +|++||+++++.+..+ |++.+.+++|++.+
T Consensus 389 ~g~g~~~~~-----~~~~~l~~~v~~~l~~~-----~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 389 WKIGVRISG-----FGQKEVEEGLRKVMEDS-----GMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred hCceeEeCC-----CCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 799988753 89999999999999887 9999999999998765 46668888888876
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.3e-60 Score=467.90 Aligned_cols=414 Identities=22% Similarity=0.374 Sum_probs=298.9
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCchhhh----ccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITI--LLPRKAQTQL----QHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~--~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
.-||+++|++++||++|++.||+.|+.+| +.||+ ..+..+...+ ........+++++.+|+. .+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~----~~~~~~ 78 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV----TPYSSS 78 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC----CCCCCc
Confidence 34999999999999999999999999998 56666 4444322211 111111124899988843 221111
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhC----CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc-ccc
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAA----KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV-PAR 159 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-p~~ 159 (471)
.... ......+..........+.++|++. ++++||+| +..|+..+|+++|||.+.+++++++..+.+.+ +..
T Consensus 79 ~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 79 STSR--HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred cccc--cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1111 1122333334445566666666654 34999999 79999999999999999999999987765544 221
Q ss_pred CCCC-CCCCCccccCCCCCCCCCCcccccccccccccccc-cCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHH
Q 012080 160 NVPK-DRPVTEAELAMPPAGYPSDTIVLRRHEARELTFIS-FPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYI 237 (471)
Q Consensus 160 ~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 237 (471)
.... ...... ..+...+++|. +.. ..++... .........+.+.......++.+++||+++||++.++.+
T Consensus 157 ~~~~~~~~~~~-~~~v~iPg~p~----l~~---~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l 228 (451)
T PLN03004 157 DETTPGKNLKD-IPTVHIPGVPP----MKG---SDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAI 228 (451)
T ss_pred ccccccccccc-CCeecCCCCCC----CCh---HHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHH
Confidence 1000 000000 00011233332 222 3333211 111112344444445566788999999999999999999
Q ss_pred HHHcC-CCeEEeccCCCCCC---C-CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCC
Q 012080 238 ARQYN-KPVFLTGPVLHEPA---K-TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKP 312 (471)
Q Consensus 238 ~~~~~-~~v~~vGp~~~~~~---~-~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (471)
+..+. ++++.|||+..... . ...+.+|.+|||++++++||||||||+...+.+++++++.+|+.++.+|+|+++.
T Consensus 229 ~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~ 308 (451)
T PLN03004 229 TEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRN 308 (451)
T ss_pred HhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 87643 58999999974211 1 1123469999999988999999999999899999999999999999999999995
Q ss_pred CCCCC----cccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhH
Q 012080 313 PTGAS----TVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNT 388 (471)
Q Consensus 313 ~~~~~----~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 388 (471)
....+ .....+|++|.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 309 ~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 309 PPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred CccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 32110 12223899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 389 RLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 389 ~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
+++++++|+|+.++..+.+.+++++|+++|+++|.++ +|++||++++++.+..
T Consensus 389 ~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~-----~~r~~a~~~~~~a~~A 441 (451)
T PLN03004 389 VMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC-----PVRERTMAMKNAAELA 441 (451)
T ss_pred HHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHH
Confidence 9998468999999853223589999999999999887 9999999999987766
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-59 Score=471.35 Aligned_cols=429 Identities=21% Similarity=0.318 Sum_probs=314.0
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
..+.+.||+++|++++||++|++.||+.|+++ ||+||+++++.+...+++... +.+++|+.+| ++++++....
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp----~~~p~~~~~~ 80 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIP----NVIPSELVRA 80 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECC----CCCCCccccc
Confidence 34677899999999999999999999999999 999999999998877765421 2249999887 3444432211
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhC--CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCC
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAA--KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKD 164 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~ 164 (471)
.+...++....+.....+++++++. ++|+||+| +..|+..+|+++|||++.++++++.....+.+.......+
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~ 156 (459)
T PLN02448 81 ----ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNG 156 (459)
T ss_pred ----cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhcc
Confidence 1223344443445666777777764 67999999 7999999999999999999999986655443321111011
Q ss_pred CCCCcc-c-cCCCCCCCCCCcccccccccccccccccCCCC-chhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc
Q 012080 165 RPVTEA-E-LAMPPAGYPSDTIVLRRHEARELTFISFPFGE-GMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY 241 (471)
Q Consensus 165 ~~~~~~-~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 241 (471)
...... + ...+...+|.. .......++.+...... ....+.+........+.+++||+++||+...+++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~iPg~----~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 232 (459)
T PLN02448 157 HFPVELSESGEERVDYIPGL----SSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF 232 (459)
T ss_pred CCCCccccccCCccccCCCC----CCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc
Confidence 000000 0 00001123321 11122223221111111 12333444444556789999999999999999998877
Q ss_pred CCCeEEeccCCCCCCC--------C-CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCC
Q 012080 242 NKPVFLTGPVLHEPAK--------T-PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKP 312 (471)
Q Consensus 242 ~~~v~~vGp~~~~~~~--------~-~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (471)
+++++.|||+...... . ..+.++.+|++.++++++|||||||+...+.+++++++.+|+.++.+|||+++.
T Consensus 233 ~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~ 312 (459)
T PLN02448 233 PFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARG 312 (459)
T ss_pred CCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 7789999998653110 1 112478999999988899999999998888999999999999999999998763
Q ss_pred CCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHH
Q 012080 313 PTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLA 392 (471)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~ 392 (471)
. ..++.++. +.|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||++++
T Consensus 313 ~----------~~~~~~~~-~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 313 E----------ASRLKEIC-GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred c----------hhhHhHhc-cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 2 11222222 235677789999999999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEeecc--cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHHh
Q 012080 393 EELKVAVEVERE--ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMRG 462 (471)
Q Consensus 393 ~~~G~G~~l~~~--~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~~ 462 (471)
+.+|+|+.+... ..+.+++++|+++|+++|.+++++|++||+||+++++++++. |++.+.+++|++.++.
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 458999998632 113589999999999999875578999999999999988766 5566889999988864
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-59 Score=462.04 Aligned_cols=431 Identities=25% Similarity=0.386 Sum_probs=307.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCchh-h----hccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKAQT-Q----LQHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~-~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
++.|++++|++++||++|++.||+.|+.+| ..||+++++.+.. . +.+.......++|+.+|... ..++. .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~~~~~-~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELE--EKPTL-G 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCC--CCCcc-c
Confidence 346999999999999999999999999998 9999999987542 1 22111111248999998211 11211 1
Q ss_pred CCCCCChhhHHHHHHHHHHh----HHHHHHHHHhC----CC-cEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhh
Q 012080 86 TASDVPMSSINLLVIAMDRC----RGQVEAVIKAA----KP-RLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATAL 155 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~----~~-Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 155 (471)
. ..+...++...+... .+.+.+++++. +| ++||+| +.+|+..+|+++|||.+.++++++...+.+.
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 79 G----TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred c----ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 1 112222333333333 34456666543 34 899999 7999999999999999999999987766543
Q ss_pred cc-ccCCCCCCC-CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhH
Q 012080 156 VP-ARNVPKDRP-VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDL 233 (471)
Q Consensus 156 ~p-~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 233 (471)
+. ......... ....+ .+..+|.....+...+++.+. ... . ....+.+........+++++||+++||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~---~~~~vPgl~~~l~~~dlp~~~--~~~-~-~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~ 227 (468)
T PLN02207 155 YLADRHSKDTSVFVRNSE---EMLSIPGFVNPVPANVLPSAL--FVE-D-GYDAYVKLAILFTKANGILVNSSFDIEPYS 227 (468)
T ss_pred HhhhccccccccCcCCCC---CeEECCCCCCCCChHHCcchh--cCC-c-cHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 32 211110000 00000 111223210013332322211 111 1 133344444556778999999999999999
Q ss_pred HHHHHH-HcCCCeEEeccCCCCCCC------CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCce
Q 012080 234 CEYIAR-QYNKPVFLTGPVLHEPAK------TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCF 306 (471)
Q Consensus 234 ~~~~~~-~~~~~v~~vGp~~~~~~~------~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 306 (471)
.+.++. ...++++.|||+...... ...++++.+||++++++++|||||||....+.+++++++.+|+.++++|
T Consensus 228 ~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 228 VNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred HHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 988865 233689999999753210 0122679999999988899999999999999999999999999999999
Q ss_pred EEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchh
Q 012080 307 LIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQIL 386 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~ 386 (471)
+|+++.... ...+.+|++|.++..+++ ++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 308 lW~~r~~~~--~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~ 384 (468)
T PLN02207 308 LWSLRTEEV--TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQL 384 (468)
T ss_pred EEEEeCCCc--cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchh
Confidence 999984321 112348999998876655 55589999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcceEEeecc----cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHH
Q 012080 387 NTRLLAEELKVAVEVERE----ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQ 458 (471)
Q Consensus 387 na~~v~~~~G~G~~l~~~----~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~ 458 (471)
||+++++++|+|+.+..+ ..+.++.++|+++|+++|.+ ++++||+||+++++++++. |++.+.+++|++
T Consensus 385 Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~---~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~ 461 (468)
T PLN02207 385 NAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK---DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIH 461 (468)
T ss_pred hHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999988469999987421 11346999999999999962 3669999999999998855 556688999998
Q ss_pred HHHhc
Q 012080 459 NMRGL 463 (471)
Q Consensus 459 ~~~~~ 463 (471)
.+...
T Consensus 462 ~~~~~ 466 (468)
T PLN02207 462 DVIGI 466 (468)
T ss_pred HHHhc
Confidence 88654
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.8e-59 Score=462.25 Aligned_cols=416 Identities=23% Similarity=0.374 Sum_probs=300.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCc-hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKA-QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
+.||+++|++++||++|++.||+.|+. +|+.|||++++.+ .............++|+.++ ++++++.+...
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~----dglp~g~~~~~--- 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFS----DGFDDGVISNT--- 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcC----CCCCCcccccc---
Confidence 359999999999999999999999995 6999999999854 22111111111248898886 57766532111
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC----C-CcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcc-ccCCCCC
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAA----K-PRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVP-ARNVPKD 164 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~----~-~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p-~~~~~~~ 164 (471)
.....++........+.+.+++++. + +++||+| +.+|+..+|+++|||.+.+++++++....+.+. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---- 151 (455)
T PLN02152 76 DDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---- 151 (455)
T ss_pred ccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----
Confidence 1233344444445556666666642 3 4999999 799999999999999999999999876654332 110
Q ss_pred CCCCccccCCCCCCCCCCcccccccccccccccc-cC--CCCchhHHHHHHhhhc--cCCEEEEcCccccchhHHHHHHH
Q 012080 165 RPVTEAELAMPPAGYPSDTIVLRRHEARELTFIS-FP--FGEGMSFYERITTSLK--ESDAISIRTCHEIEGDLCEYIAR 239 (471)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~ 239 (471)
+.....+++|. +.. ..++... .. .......+.+...... .++++++||+++||+...+.++.
T Consensus 152 ------~~~~~iPglp~----l~~---~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 218 (455)
T PLN02152 152 ------NSVFEFPNLPS----LEI---RDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN 218 (455)
T ss_pred ------CCeeecCCCCC----Cch---HHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc
Confidence 00001133332 222 2333211 11 1111233444444332 24689999999999999998865
Q ss_pred HcCCCeEEeccCCCCC----CC-------CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEE
Q 012080 240 QYNKPVFLTGPVLHEP----AK-------TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLI 308 (471)
Q Consensus 240 ~~~~~v~~vGp~~~~~----~~-------~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~ 308 (471)
.+++.|||+.... .. ...+.++.+|||++++++||||||||+...+.+++++++.+|+.++.+|+|
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred ---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 2699999996421 00 012347999999998889999999999999999999999999999999999
Q ss_pred EeCCCCCCC-----cccc--cCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc
Q 012080 309 ALKPPTGAS-----TVEE--AFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL 381 (471)
Q Consensus 309 ~~~~~~~~~-----~~~~--~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 381 (471)
+++.....+ .... .+|++|.++..+.+ ++.+|+||.+||+|+++|+|||||||||++||+++|||||++|++
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 374 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW 374 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc
Confidence 998532110 0000 24788887765555 556899999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHH
Q 012080 382 GDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFV 457 (471)
Q Consensus 382 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~ 457 (471)
+||+.||+++++.+|+|+.+..+..+.++.++|+++|+++|.++ ++.||+||++++++.++. |++.+.+++|+
T Consensus 375 ~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li 451 (455)
T PLN02152 375 SDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK---SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFV 451 (455)
T ss_pred ccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 99999999999556888777643223579999999999999643 557999999998887776 55668888888
Q ss_pred HHH
Q 012080 458 QNM 460 (471)
Q Consensus 458 ~~~ 460 (471)
+.+
T Consensus 452 ~~i 454 (455)
T PLN02152 452 KTL 454 (455)
T ss_pred HHh
Confidence 765
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=3.5e-58 Score=463.36 Aligned_cols=429 Identities=22% Similarity=0.351 Sum_probs=305.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCchhh-------hccCCC-CCCCeEEEEecCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKAQTQ-------LQHFNL-HPDLITLHPLTVPHVDGLPAG 83 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~-------~~~~~~-~~~~~~~~~i~~~~~~~~~~~ 83 (471)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+... +.+... ....++++.+|.+. +..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~----~~~ 77 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGD----QPT 77 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCC----CCc
Confidence 46999999999999999999999999998 88999999876432 111111 01248999988432 111
Q ss_pred CCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhC-----CC-cEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc
Q 012080 84 AETASDVPMSSINLLVIAMDRCRGQVEAVIKAA-----KP-RLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV 156 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-----~~-Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 156 (471)
.. . ..+..++........+.+.+++++. +| ++||+| +..|+..+|+++|||++.|++++++..+.+.+
T Consensus 78 ~~----~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 78 TE----D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred cc----c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 00 1 1222333333334444455555431 33 799999 79999999999999999999999988776544
Q ss_pred cc-cCCCCCCCCCc-cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHH
Q 012080 157 PA-RNVPKDRPVTE-AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLC 234 (471)
Q Consensus 157 p~-~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 234 (471)
.. .+......... .+. ..+..+|.....++.. .++..... ......+.+.......++++++||+.++|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~v~iPgl~~pl~~~---dlp~~~~~-~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~ 227 (481)
T PLN02554 153 VQMLYDEKKYDVSELEDS-EVELDVPSLTRPYPVK---CLPSVLLS-KEWLPLFLAQARRFREMKGILVNTVAELEPQAL 227 (481)
T ss_pred hhhhccccccCccccCCC-CceeECCCCCCCCCHH---HCCCcccC-HHHHHHHHHHHHhcccCCEEEEechHHHhHHHH
Confidence 32 11110000000 000 0001122210002222 22211110 112344455555667889999999999999988
Q ss_pred HHHHHH--cCCCeEEeccCCC-CCC----CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceE
Q 012080 235 EYIARQ--YNKPVFLTGPVLH-EPA----KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFL 307 (471)
Q Consensus 235 ~~~~~~--~~~~v~~vGp~~~-~~~----~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~ 307 (471)
..+.+. ..++++.|||+.. ... ....+.+|.+||+++++++||||||||+...+.+++++++.+|+.++.+|+
T Consensus 228 ~~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~fl 307 (481)
T PLN02554 228 KFFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFL 307 (481)
T ss_pred HHHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeE
Confidence 888763 3358999999942 221 123456899999999888999999999988999999999999999999999
Q ss_pred EEeCCCCC---------CCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEec
Q 012080 308 IALKPPTG---------ASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLV 378 (471)
Q Consensus 308 ~~~~~~~~---------~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~ 378 (471)
|+++.... .....+.+|++|.++..+.+ ++.+|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 308 W~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~ 386 (481)
T PLN02554 308 WSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAW 386 (481)
T ss_pred EEEcCCcccccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEec
Confidence 99985311 01112236899988876655 556899999999999999999999999999999999999999
Q ss_pred cccccchhhHH-HHHHhhcceEEeecc--------cCCcccHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhhhcCC--
Q 012080 379 PHLGDQILNTR-LLAEELKVAVEVERE--------ENGWFSKESLCKAIKCVMD-KESEVGNVVRRNHAKWKGTLVSP-- 446 (471)
Q Consensus 379 P~~~DQ~~na~-~v~~~~G~G~~l~~~--------~~~~~t~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~~-- 446 (471)
|+++||+.||+ +++ ++|+|+.++.. +.+.+++++|+++|+++|. ++ +||+||+++++.+++.
T Consensus 387 P~~~DQ~~Na~~~v~-~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~-----~~r~~a~~l~~~~~~av~ 460 (481)
T PLN02554 387 PLYAEQKFNAFEMVE-ELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDS-----DVRKRVKEMSEKCHVALM 460 (481)
T ss_pred CccccchhhHHHHHH-HhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHhc
Confidence 99999999995 567 99999999741 1135899999999999996 55 9999999999998854
Q ss_pred --CchhHHHHHHHHHHHhc
Q 012080 447 --GFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 447 --~~~~~~i~~~~~~~~~~ 463 (471)
|++.+.+++|++.+..-
T Consensus 461 ~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 461 DGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CCChHHHHHHHHHHHHHhh
Confidence 55668889999888653
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.6e-57 Score=453.92 Aligned_cols=435 Identities=23% Similarity=0.363 Sum_probs=299.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCch-----hhhccCCCCCCCeEEEEecCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGH---KITILLPRKAQ-----TQLQHFNLHPDLITLHPLTVPHVDGLPAGA 84 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh---~Vt~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 84 (471)
++.||+++|++++||++|++.||+.|+.+|. .||+..+.... ..+.+.......++|+.+|++. . +.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~--~-p~~~ 78 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ--D-PPPM 78 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC--C-Cccc
Confidence 5679999999999999999999999999983 56777654321 1122111111249999988542 1 2111
Q ss_pred CCCCCCC-hhhHHHHHHHHHHhHHHHHHHHHhC------CCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc
Q 012080 85 ETASDVP-MSSINLLVIAMDRCRGQVEAVIKAA------KPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV 156 (471)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~------~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~ 156 (471)
+...... ..+...+........+.+.+++.+. ++++||+| +..|+..+|+++|||.+.++++++...+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~ 158 (475)
T PLN02167 79 ELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKY 158 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHH
Confidence 1101111 1122222222222223333333221 34899999 79999999999999999999999877665442
Q ss_pred -cccCCCCCCCCCcc--ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhH
Q 012080 157 -PARNVPKDRPVTEA--ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDL 233 (471)
Q Consensus 157 -p~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 233 (471)
+............. +.....+++|.. ++...++... ... .....+.+.......++++++||+++||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~iPgl~~~---l~~~dlp~~~--~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 159 LPERHRKTASEFDLSSGEEELPIPGFVNS---VPTKVLPPGL--FMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHhccccccccccCCCCCeeECCCCCCC---CChhhCchhh--hCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 22111000000000 000012333211 2222222111 011 1122333444556778899999999999999
Q ss_pred HHHHHHHc--CCCeEEeccCCCCCC----C--CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCc
Q 012080 234 CEYIARQY--NKPVFLTGPVLHEPA----K--TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLC 305 (471)
Q Consensus 234 ~~~~~~~~--~~~v~~vGp~~~~~~----~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~ 305 (471)
.++++... -++++.|||+..... . .....+|.+||+++++++||||||||+...+.+++.+++.+|+.++.+
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~ 311 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCR 311 (475)
T ss_pred HHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCc
Confidence 99986641 157999999975321 1 112357999999998889999999999889999999999999999999
Q ss_pred eEEEeCCCCCC-CcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccc
Q 012080 306 FLIALKPPTGA-STVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQ 384 (471)
Q Consensus 306 ~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 384 (471)
|||+++..... ......+|++|.++..+.++ +.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 312 flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~-v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 390 (475)
T PLN02167 312 FLWSIRTNPAEYASPYEPLPEGFMDRVMGRGL-VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQ 390 (475)
T ss_pred EEEEEecCcccccchhhhCChHHHHHhccCee-eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 99999853211 11123489999988877774 45799999999999999999999999999999999999999999999
Q ss_pred hhhHHH-HHHhhcceEEeecc----cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHH
Q 012080 385 ILNTRL-LAEELKVAVEVERE----ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDK 455 (471)
Q Consensus 385 ~~na~~-v~~~~G~G~~l~~~----~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~ 455 (471)
+.||++ ++ ++|+|+.+... ..+.+++++|+++|+++|.++ +.||+||+++++.+++. |++.+.+++
T Consensus 391 ~~na~~~~~-~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~----~~~r~~a~~~~~~~~~av~~gGsS~~~l~~ 465 (475)
T PLN02167 391 QLNAFTMVK-ELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE----DVPRKKVKEIAEAARKAVMDGGSSFVAVKR 465 (475)
T ss_pred hhhHHHHHH-HhCeeEEeecccccccCCcccHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999987 56 99999998642 013479999999999999753 27999999999887666 556688999
Q ss_pred HHHHHHhc
Q 012080 456 FVQNMRGL 463 (471)
Q Consensus 456 ~~~~~~~~ 463 (471)
|++.+...
T Consensus 466 ~v~~i~~~ 473 (475)
T PLN02167 466 FIDDLLGD 473 (475)
T ss_pred HHHHHHhc
Confidence 99888654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-50 Score=406.64 Aligned_cols=399 Identities=19% Similarity=0.176 Sum_probs=273.7
Q ss_pred CCCeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC----
Q 012080 13 SAFPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA---- 87 (471)
Q Consensus 13 ~~~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 87 (471)
..+||+++ |.++.+|+.-+.+|+++|++|||+||++++..... .... ...+++.+.++.... .+.......
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~--~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 94 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH--LCGNITEIDASLSVE-YFKKLVKSSAVFR 94 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC--CCCCEEEEEcCCChH-HHHHHHhhhhHHH
Confidence 45679876 88899999999999999999999999998764211 1110 112365555532110 000000000
Q ss_pred --CCC-C-hh----hHHHHHHHHHHh--HHHHHHHHH--hCCCcEEEEc-CccchHHHHHHc-CCceEEEecchhHHHH-
Q 012080 88 --SDV-P-MS----SINLLVIAMDRC--RGQVEAVIK--AAKPRLLFYD-IAYWMATISKSL-SIKCIKYNVVCAASIA- 152 (471)
Q Consensus 88 --~~~-~-~~----~~~~~~~~~~~~--~~~l~~~l~--~~~~Dlvi~D-~~~~~~~~A~~~-giP~v~~~~~~~~~~~- 152 (471)
... . .. ....+...++.. .+.+.++|+ +.++|+||+| +..|+..+|+.+ ++|.|.+++.......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 000 0 00 001111223222 355678887 7789999999 799999999999 9999888775443221
Q ss_pred -Hhh-ccccCCCCCCCCCccccCCCCCCCCCCccccc------ccccccccc------cccCCCCchhHHHHHH------
Q 012080 153 -TAL-VPARNVPKDRPVTEAELAMPPAGYPSDTIVLR------RHEARELTF------ISFPFGEGMSFYERIT------ 212 (471)
Q Consensus 153 -~~~-~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~------~~~~~~~~~------~~~~~~~~~~~~~~~~------ 212 (471)
..+ .| .++.++|.....+. .+..+.+.. +...+.....++++.+
T Consensus 175 ~~~gg~p----------------~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~ 238 (507)
T PHA03392 175 ETMGAVS----------------RHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPT 238 (507)
T ss_pred HhhccCC----------------CCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCC
Confidence 112 22 23344443322111 111010000 0000000111222221
Q ss_pred --hhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCCCCC-CCCCChhhhhhccCCCCCCcEEEEEeCcccc---
Q 012080 213 --TSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHEP-AKTPSEERWDKWLGGFERSSVVYCAFGSQII--- 286 (471)
Q Consensus 213 --~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~-~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~--- 286 (471)
......+.+++|+.+.++.+. .+++++++|||+..+. ...++++++.+|+++++ +++||+||||+..
T Consensus 239 ~~~l~~~~~l~lvns~~~~d~~r------p~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~ 311 (507)
T PHA03392 239 IRELRNRVQLLFVNVHPVFDNNR------PVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTND 311 (507)
T ss_pred HHHHHhCCcEEEEecCccccCCC------CCCCCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCC
Confidence 112345788999998777543 2788999999987643 34577899999999875 6899999999864
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHH
Q 012080 287 LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMW 366 (471)
Q Consensus 287 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~ 366 (471)
.+.+.++.+++|++..+.+|+|+++..... ..+ ++|+++.+|+||.+||+|+++++||||||+||++
T Consensus 312 ~~~~~~~~~l~a~~~l~~~viw~~~~~~~~----~~~---------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~ 378 (507)
T PHA03392 312 MDNEFLQMLLRTFKKLPYNVLWKYDGEVEA----INL---------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTD 378 (507)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCCcCc----ccC---------CCceEEecCCCHHHHhcCCCCCEEEecCCcccHH
Confidence 467889999999999999999998742110 012 4588999999999999999999999999999999
Q ss_pred HHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 367 ESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 367 Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
||+++|||||++|+++||+.||+|++ ++|+|+.+++.+ +|.++|.++|+++|+|+ +|++||+++++.++++
T Consensus 379 Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~~---~t~~~l~~ai~~vl~~~-----~y~~~a~~ls~~~~~~ 449 (507)
T PHA03392 379 EAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTVT---VSAAQLVLAIVDVIENP-----KYRKNLKELRHLIRHQ 449 (507)
T ss_pred HHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccCC---cCHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999 999999999855 99999999999999998 9999999999999999
Q ss_pred C--chhHHHHHHHHHH
Q 012080 447 G--FVSGYIDKFVQNM 460 (471)
Q Consensus 447 ~--~~~~~i~~~~~~~ 460 (471)
+ +.++++.-+...+
T Consensus 450 p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 450 PMTPLHKAIWYTEHVI 465 (507)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6 4556654444333
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.8e-50 Score=415.21 Aligned_cols=393 Identities=20% Similarity=0.279 Sum_probs=220.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCC-C-CCCCCCh-
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGA-E-TASDVPM- 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~- 92 (471)
|||++|. +.||+.++..|+++|++|||+||++++..... +.. ....++++..++.+ .+... . ...+...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNP--SKPSNIRFETYPDP----YPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT---------S-CCEEEE---------TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-ccc--ccccceeeEEEcCC----cchHHHhhhhHHHHHH
Confidence 6888885 78999999999999999999999998865322 211 11223566666532 21110 0 0110000
Q ss_pred ---------hhHHHHHH---HHHHhH---------HHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHH
Q 012080 93 ---------SSINLLVI---AMDRCR---------GQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAAS 150 (471)
Q Consensus 93 ---------~~~~~~~~---~~~~~~---------~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~ 150 (471)
.....+.. ..+... +.+.+.+++.++|++|+| +.+|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 01111111 011111 223345566689999999 88899999999999998654332211
Q ss_pred HHHhhccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHH-Hh----------------
Q 012080 151 IATALVPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERI-TT---------------- 213 (471)
Q Consensus 151 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------- 213 (471)
.... .....+.++.+.|.....+. .......++. .....+..+. ..
T Consensus 154 ~~~~-------------~~~g~p~~psyvP~~~s~~~-~~msf~~Ri~---N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (500)
T PF00201_consen 154 DLSS-------------FSGGVPSPPSYVPSMFSDFS-DRMSFWQRIK---NFLFYLYFRFIFRYFFSPQDKLYKKYFGF 216 (500)
T ss_dssp CCTC-------------CTSCCCTSTTSTTCBCCCSG-TTSSSST--T---TSHHHHHHHHHHHHGGGS-TTS-EEESS-
T ss_pred hhhh-------------hccCCCCChHHhccccccCC-Cccchhhhhh---hhhhhhhhccccccchhhHHHHHhhhccc
Confidence 0000 00011223333333221110 0000000000 0011111110 00
Q ss_pred ------hhccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccC
Q 012080 214 ------SLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIIL 287 (471)
Q Consensus 214 ------~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~ 287 (471)
.+.....+++|+.+. ++++++.. |++.++|++.... ..+++.++.+|++...++++|||||||+...
T Consensus 217 ~~~~~~~~~~~~l~l~ns~~~-----ld~prp~~-p~v~~vGgl~~~~-~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~ 289 (500)
T PF00201_consen 217 PFSFRELLSNASLVLINSHPS-----LDFPRPLL-PNVVEVGGLHIKP-AKPLPEELWNFLDSSGKKGVVYVSFGSIVSS 289 (500)
T ss_dssp GGGCHHHHHHHHHCCSSTEEE---------HHHH-CTSTTGCGC-S-----TCHHHHHHHTSTTTTTEEEEEE-TSSSTT
T ss_pred ccccHHHHHHHHHHhhhcccc-----CcCCcchh-hcccccCcccccc-ccccccccchhhhccCCCCEEEEecCcccch
Confidence 011122233444432 45556644 5899999987653 3578899999999855688999999999864
Q ss_pred CH-HHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHH
Q 012080 288 EK-KQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMW 366 (471)
Q Consensus 288 ~~-~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~ 366 (471)
.+ +..+.++++|++++.+|+|+++.. .++++ ++|+++.+|+||.+||+||++++||||||+||++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~~~~l-----~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~ 355 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGE---------PPENL-----PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQ 355 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCS---------HGCHH-----HTTEEEESS--HHHHHTSTTEEEEEES--HHHHH
T ss_pred hHHHHHHHHHHHHhhCCCccccccccc---------ccccc-----cceEEEeccccchhhhhcccceeeeeccccchhh
Confidence 44 447889999999999999999741 12222 3588999999999999999999999999999999
Q ss_pred HHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 367 ESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 367 Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
||+++|||||++|+++||+.||++++ +.|+|+.++..+ +|.++|.++|+++|+|+ +|++||++++++++++
T Consensus 356 Ea~~~gvP~l~~P~~~DQ~~na~~~~-~~G~g~~l~~~~---~~~~~l~~ai~~vl~~~-----~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 356 EALYHGVPMLGIPLFGDQPRNAARVE-EKGVGVVLDKND---LTEEELRAAIREVLENP-----SYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHCT--EEE-GCSTTHHHHHHHHH-HTTSEEEEGGGC----SHHHHHHHHHHHHHSH-----HHHHHHHHHHHTTT--
T ss_pred hhhhccCCccCCCCcccCCccceEEE-EEeeEEEEEecC---CcHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999 999999999865 99999999999999998 9999999999999999
Q ss_pred Cchh-HHHHHHHHHHHhc
Q 012080 447 GFVS-GYIDKFVQNMRGL 463 (471)
Q Consensus 447 ~~~~-~~i~~~~~~~~~~ 463 (471)
+-.. +.+...+|.+.+.
T Consensus 427 p~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 427 PISPLERAVWWIEYVARH 444 (500)
T ss_dssp ------------------
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 5332 3344445555443
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.3e-44 Score=360.39 Aligned_cols=385 Identities=18% Similarity=0.254 Sum_probs=258.7
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC-CCCChhhHHHH
Q 012080 20 LPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA-SDVPMSSINLL 98 (471)
Q Consensus 20 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~ 98 (471)
+.+|+.||++|+++||++|+++||+|++++++.+...+++.| +.|..++..... ++..... ..........+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAG-----AEFVLYGSALPP--PDNPPENTEEEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcC-----CEEEecCCcCcc--ccccccccCcchHHHHHHH
Confidence 357899999999999999999999999999999999998888 888887632111 1110000 01111222233
Q ss_pred HHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCC
Q 012080 99 VIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPA 177 (471)
Q Consensus 99 ~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 177 (471)
......+.+.+.+++++.+||+||+| +.+++..+|+.+|||+|.+++.+... ..++....+.+ .
T Consensus 74 ~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~---~~~~~~~~~~~------------~ 138 (392)
T TIGR01426 74 LDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN---EEFEEMVSPAG------------E 138 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc---ccccccccccc------------h
Confidence 33344455667777788899999999 68899999999999999886543211 00110000000 0
Q ss_pred CCCCCcccccc---cccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCCCC
Q 012080 178 GYPSDTIVLRR---HEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHE 254 (471)
Q Consensus 178 ~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~ 254 (471)
.+........+ .....+..+...++.......+.. ....+..+..+. +.+++.+..++++++++||+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~--~~~~~~~l~~~~-----~~l~~~~~~~~~~~~~~Gp~~~~ 211 (392)
T TIGR01426 139 GSAEEGAIAERGLAEYVARLSALLEEHGITTPPVEFLA--APRRDLNLVYTP-----KAFQPAGETFDDSFTFVGPCIGD 211 (392)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHhCCCCCCHHHHh--cCCcCcEEEeCC-----hHhCCCccccCCCeEEECCCCCC
Confidence 00000000000 000000001111110000000000 011111233222 33444445688899999997653
Q ss_pred CCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCC
Q 012080 255 PAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGR 334 (471)
Q Consensus 255 ~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 334 (471)
.. +...|....+++++||+||||+.......+..++++++..+.+++|..+.+.+...... + ++
T Consensus 212 ~~------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~-~---------~~ 275 (392)
T TIGR01426 212 RK------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGE-L---------PP 275 (392)
T ss_pred cc------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhcc-C---------CC
Confidence 21 12246665566889999999986666677888999999899999998875422211111 2 35
Q ss_pred cEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHH
Q 012080 335 GVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESL 414 (471)
Q Consensus 335 nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l 414 (471)
|+.+.+|+||.++|+++++ ||||||+||++|++++|+|+|++|...||+.||.+++ ++|+|+.+...+ +++++|
T Consensus 276 ~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~-~~g~g~~l~~~~---~~~~~l 349 (392)
T TIGR01426 276 NVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIA-ELGLGRHLPPEE---VTAEKL 349 (392)
T ss_pred CeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHH-HCCCEEEecccc---CCHHHH
Confidence 7889999999999999988 9999999999999999999999999999999999999 999999998654 999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 415 CKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 415 ~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
.++|+++|.|+ +|+++++++++.++..++..++++.+.+.+
T Consensus 350 ~~ai~~~l~~~-----~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 350 REAVLAVLSDP-----RYAERLRKMRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHhcCH-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 99999999998 999999999999999888887777776654
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.4e-43 Score=354.52 Aligned_cols=379 Identities=17% Similarity=0.172 Sum_probs=253.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC----CC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS----DV 90 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~ 90 (471)
+||+|++.|+.||++|+++||++|++|||+|+|++++.++..++..| ++|..++..... ......... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 74 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAG-----LEFVPVGGDPDE-LLASPERNAGLLLLG 74 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcC-----CceeeCCCCHHH-HHhhhhhcccccccc
Confidence 59999999999999999999999999999999999999998888877 888877622100 000000000 00
Q ss_pred C---hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 91 P---MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 91 ~---~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
. ......+........+.+.+.+++.+||+||+| +.+++..+|+++|||++.+++++........
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~----------- 143 (401)
T cd03784 75 PGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFP----------- 143 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCC-----------
Confidence 0 112233334445556666777777899999999 7888999999999999999876543211000
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhc--c-------CCEEEEcCccccchhHHHHH
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLK--E-------SDAISIRTCHEIEGDLCEYI 237 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~l~~~~~~l~~~~~~~~ 237 (471)
++. . . ........+. .............+....+. . ....+.... +.+..+
T Consensus 144 ---------~~~-~-~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-----~~~~~~ 203 (401)
T cd03784 144 ---------PPL-G-R---ANLRLYALLE-AELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS-----PAVLPP 203 (401)
T ss_pred ---------Ccc-c-h---HHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC-----cccCCC
Confidence 000 0 0 0000000000 00000000111111111111 0 111111111 112222
Q ss_pred HHHcCCCeEEec-cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCH-HHHHHHHHHHHhcCCceEEEeCCCCC
Q 012080 238 ARQYNKPVFLTG-PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEK-KQFQELLLGLELTGLCFLIALKPPTG 315 (471)
Q Consensus 238 ~~~~~~~v~~vG-p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~~ 315 (471)
.+.++++..++| ++...+.+...+.++..|++.. +++|||+|||+..... ..+..++++++..+.+++|+.+....
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~ 281 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL 281 (401)
T ss_pred CCCccccCcEeCCCCCCCCCCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc
Confidence 344666777775 4443333344566777888764 5699999999977444 56677888998889999999875322
Q ss_pred CCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh
Q 012080 316 ASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL 395 (471)
Q Consensus 316 ~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~ 395 (471)
.. ... ++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+..||+.||++++ ++
T Consensus 282 ~~---~~~---------~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~-~~ 346 (401)
T cd03784 282 GA---EDL---------PDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVA-EL 346 (401)
T ss_pred cc---cCC---------CCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHH-HC
Confidence 11 012 458899999999999999888 9999999999999999999999999999999999999 99
Q ss_pred cceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHH
Q 012080 396 KVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKF 456 (471)
Q Consensus 396 G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~ 456 (471)
|+|+.++..+ +++++|.++|+++|++ .++++++++++.+++.++..++++.+
T Consensus 347 G~g~~l~~~~---~~~~~l~~al~~~l~~------~~~~~~~~~~~~~~~~~g~~~~~~~i 398 (401)
T cd03784 347 GAGPALDPRE---LTAERLAAALRRLLDP------PSRRRAAALLRRIREEDGVPSAADVI 398 (401)
T ss_pred CCCCCCCccc---CCHHHHHHHHHHHhCH------HHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 9999998744 8999999999999985 66677888888887776666555544
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-41 Score=334.97 Aligned_cols=392 Identities=18% Similarity=0.226 Sum_probs=248.9
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
++||+|+..|+.||++|+++||++|.++||+|+|++++.+++.++++| +.|..++..+. ..............
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag-----~~f~~~~~~~~--~~~~~~~~~~~~~~ 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAG-----LAFVAYPIRDS--ELATEDGKFAGVKS 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhC-----cceeeccccCC--hhhhhhhhhhccch
Confidence 469999999999999999999999999999999999999999999988 67777763210 00000011111111
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcccc
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAEL 172 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 172 (471)
+.. ....+......+.+++.+..+|+++.|. ...+ .+++..++|++...............+........ ..
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 146 (406)
T COG1819 74 FRR-LLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG-----KL 146 (406)
T ss_pred hHH-HhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc-----cc
Confidence 111 2222334456677788888999999994 4333 88999999988665544332222221110000000 00
Q ss_pred CCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccC---CEEEEcCccccchhHHHHH--H-HHcCCCeE
Q 012080 173 AMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKES---DAISIRTCHEIEGDLCEYI--A-RQYNKPVF 246 (471)
Q Consensus 173 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~~~~~~~~--~-~~~~~~v~ 246 (471)
..+...++.... .... ...+. ......+....+... ..-+...-..+...+.+.. . ..+|....
T Consensus 147 ~~~~~~~~~~~~-------~~~~--~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 216 (406)
T COG1819 147 PIPLYPLPPRLV-------RPLI--FARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGP 216 (406)
T ss_pred cccccccChhhc-------cccc--cchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcC
Confidence 000000110000 0000 00000 000000000000000 0000011111111111100 0 12343455
Q ss_pred EeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChh
Q 012080 247 LTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDG 326 (471)
Q Consensus 247 ~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~ 326 (471)
++||+.... ..+...|+. .++++||+||||.... .+.++.+.+++..++.++++..+. .+. ... .+|+
T Consensus 217 ~~~~~~~~~-----~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~~-~~~-~~p~- 284 (406)
T COG1819 217 YIGPLLGEA-----ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-ARD-TLV-NVPD- 284 (406)
T ss_pred ccccccccc-----cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-ccc-ccc-cCCC-
Confidence 666654432 223333332 2467999999999876 777888999999999999999864 222 111 2555
Q ss_pred HHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 327 FAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 327 ~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|++ ++|+|+.+..+.
T Consensus 285 --------n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve-~~G~G~~l~~~~- 352 (406)
T COG1819 285 --------NVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVE-ELGAGIALPFEE- 352 (406)
T ss_pred --------ceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHH-HcCCceecCccc-
Confidence 7799999999999999999 9999999999999999999999999999999999999 999999999865
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
++.+.|+++|+++|+|+ .|+++++++++.++..++..++.+.+.+..
T Consensus 353 --l~~~~l~~av~~vL~~~-----~~~~~~~~~~~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 353 --LTEERLRAAVNEVLADD-----SYRRAAERLAEEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred --CCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999988554444444433
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.8e-41 Score=347.15 Aligned_cols=419 Identities=24% Similarity=0.363 Sum_probs=247.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEE---EecCCCC-CCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLH---PLTVPHV-DGLPAGAETASD 89 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~-~~~~~~~~~~~~ 89 (471)
..+++++++|+.||++|+..+|+.|+++||+||++.+.......... .....+... ..++... ++++...+....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 56788888889999999999999999999999999998865544221 111011111 1111100 112221110000
Q ss_pred CChhhHHHHHHHHHHhHHH-HHHHH--HhCCCcEEEEc-CccchHHHHHHcC-CceEEEecchhHHHHHhh-ccccCCCC
Q 012080 90 VPMSSINLLVIAMDRCRGQ-VEAVI--KAAKPRLLFYD-IAYWMATISKSLS-IKCIKYNVVCAASIATAL-VPARNVPK 163 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-l~~~l--~~~~~Dlvi~D-~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~-~p~~~~~~ 163 (471)
........+...+...... ..... ...++|++|+| +..+...+|...+ ++...+.+.......... .+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~--- 160 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY--- 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc---
Confidence 0000011222222222222 22222 22239999999 6566666666664 777766665554422221 11100
Q ss_pred CCCCCccccCCCCCCCCCCccccccccc----ccccccccCCCC---chhHHHHHHhhh----ccCCEEEEcC-ccccch
Q 012080 164 DRPVTEAELAMPPAGYPSDTIVLRRHEA----RELTFISFPFGE---GMSFYERITTSL----KESDAISIRT-CHEIEG 231 (471)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~l~~~-~~~l~~ 231 (471)
.+............+..... ..++........ ............ .....++.++ +..+++
T Consensus 161 --------~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~ 232 (496)
T KOG1192|consen 161 --------VPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNS 232 (496)
T ss_pred --------cCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEcc
Confidence 00000000000000000000 000000000000 000000000000 1111233344 444443
Q ss_pred hHHHHHHHH-cCCCeEEeccCCCCCCC-CC-ChhhhhhccCCCCCCcEEEEEeCccc---cCCHHHHHHHHHHHHhc-CC
Q 012080 232 DLCEYIARQ-YNKPVFLTGPVLHEPAK-TP-SEERWDKWLGGFERSSVVYCAFGSQI---ILEKKQFQELLLGLELT-GL 304 (471)
Q Consensus 232 ~~~~~~~~~-~~~~v~~vGp~~~~~~~-~~-~~~~l~~~l~~~~~~~vV~vs~Gs~~---~~~~~~~~~~~~al~~~-~~ 304 (471)
......++. ..++++.|||+...... .. ++.+|.++++.. ..++|||||||+. ..+.++..+++.+|+.+ +.
T Consensus 233 ~~~~~~~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~-~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~ 311 (496)
T KOG1192|consen 233 NPLLDFEPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDES-RHSVVYISFGSMVNSADLPEEQKKELAKALESLQGV 311 (496)
T ss_pred CcccCCCCCCCCCCceEECcEEecCccccccccHHHHHHHhhc-cCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCc
Confidence 333222121 46789999999876321 11 345555555543 2479999999998 68999999999999999 88
Q ss_pred ceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhh-hcccCcceeeccCCcchHHHHHhhCCcEEecccccc
Q 012080 305 CFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPI-LEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGD 383 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~l-L~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 383 (471)
+|+|+++...... +++++.++ ...||+..+|+||.++ |.|+++|+|||||||||++|++++|||||++|+++|
T Consensus 312 ~FiW~~~~~~~~~-----~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~D 385 (496)
T KOG1192|consen 312 TFLWKYRPDDSIY-----FPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGD 385 (496)
T ss_pred eEEEEecCCcchh-----hhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcccc
Confidence 8999998532211 23333222 3457888899999998 599999999999999999999999999999999999
Q ss_pred chhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 384 QILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 384 Q~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
|+.||++++ +.|.|..+.+.+ ++.+++.+++.++++++ +|+++|+++++.+++++.....+...++..
T Consensus 386 Q~~Na~~i~-~~g~~~v~~~~~---~~~~~~~~~~~~il~~~-----~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~ 453 (496)
T KOG1192|consen 386 QPLNARLLV-RHGGGGVLDKRD---LVSEELLEAIKEILENE-----EYKEAAKRLSEILRDQPISPELAVKWVEFV 453 (496)
T ss_pred chhHHHHHH-hCCCEEEEehhh---cCcHHHHHHHHHHHcCh-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999 888877777644 66666999999999999 999999999999999965554444344444
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=3e-25 Score=216.11 Aligned_cols=319 Identities=19% Similarity=0.180 Sum_probs=202.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh--hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT--QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
|.+|+|.+.++.||+.|.+++|++|.++||+|+|++++.-.+ .+.+.+ +.+..++.. ++.. .
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g-----~~~~~~~~~---~l~~----~---- 64 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKEN-----IPYYSISSG---KLRR----Y---- 64 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccC-----CcEEEEecc---CcCC----C----
Confidence 457889999999999999999999999999999999776432 222223 677766521 1110 0
Q ss_pred hhhHHHHHHHHHH--hHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 92 MSSINLLVIAMDR--CRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 92 ~~~~~~~~~~~~~--~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
..++.+...... ..-....++++.+||+|++. + +..+..+|+.+++|+++......
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~------------------ 125 (352)
T PRK12446 65 -FDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT------------------ 125 (352)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC------------------
Confidence 011122222221 23344567899999999999 3 55578899999999987654311
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC-CCe
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN-KPV 245 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~v 245 (471)
| ....+.. .+..+.++. ++++ .. ..++ .++
T Consensus 126 -------------~-------------------------g~~nr~~--~~~a~~v~~-~f~~----~~----~~~~~~k~ 156 (352)
T PRK12446 126 -------------P-------------------------GLANKIA--LRFASKIFV-TFEE----AA----KHLPKEKV 156 (352)
T ss_pred -------------c-------------------------cHHHHHH--HHhhCEEEE-Eccc----hh----hhCCCCCe
Confidence 0 0111111 112333332 2221 11 1123 468
Q ss_pred EEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHH-HHHHHHHHHhcCCceEEEeCCCCCCCcccccCC
Q 012080 246 FLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQ-FQELLLGLELTGLCFLIALKPPTGASTVEEAFP 324 (471)
Q Consensus 246 ~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~-~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p 324 (471)
.++|+-....-.....+...+.+.-.+++++|+|.-||.......+ +..++..+. .+.+++|..+... +.
T Consensus 157 ~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--------~~ 227 (352)
T PRK12446 157 IYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--------LD 227 (352)
T ss_pred EEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--------HH
Confidence 8999655442211111222222332334679999999997644322 333444332 2478888877421 11
Q ss_pred hhHHHhhCCCcEEecccc-Cc-hhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc-----ccchhhHHHHHHhhcc
Q 012080 325 DGFAERTKGRGVVCGEWV-EQ-MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL-----GDQILNTRLLAEELKV 397 (471)
Q Consensus 325 ~~~~~~~~~~nv~~~~~~-pq-~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~ 397 (471)
+.. .. ..++.+.+|+ +. .+++.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.++ +.|+
T Consensus 228 ~~~-~~--~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~-~~g~ 301 (352)
T PRK12446 228 DSL-QN--KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFE-RQGY 301 (352)
T ss_pred HHH-hh--cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHH-HCCC
Confidence 101 00 1244455677 43 478999998 99999999999999999999999974 48999999999 9999
Q ss_pred eEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 398 AVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 398 G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
|..+..++ ++++.|.++|.+++.|+ +.|++++++
T Consensus 302 ~~~l~~~~---~~~~~l~~~l~~ll~~~----~~~~~~~~~ 335 (352)
T PRK12446 302 ASVLYEED---VTVNSLIKHVEELSHNN----EKYKTALKK 335 (352)
T ss_pred EEEcchhc---CCHHHHHHHHHHHHcCH----HHHHHHHHH
Confidence 99998654 99999999999999774 145555544
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.1e-24 Score=211.04 Aligned_cols=306 Identities=17% Similarity=0.207 Sum_probs=194.0
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCC-CCCCCCCCh
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAG-AETASDVPM 92 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~ 92 (471)
+||+|. ...|.||+.++++||++| |||+|++++.......+... +....++ ++... .....+...
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR------FPVREIP-----GLGPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc------cCEEEcc-----CceEeccCCccchHH
Confidence 589997 556889999999999999 69999999998765544321 2333332 11111 011111111
Q ss_pred hhHHHH--HHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 93 SSINLL--VIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 93 ~~~~~~--~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
...... ........+.+.+.+++.+||+||+|+.+.+..+|+..|+|++.+........ +.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~~~aa~~~giP~i~i~~~~~~~~-----~~------------ 130 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLREFRPDLVISDFYPLAALAARRAGIPVIVISNQYWFLH-----PN------------ 130 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHHHHHHHhcCCCEEEEEehHHccc-----cc------------
Confidence 111111 11234455667778889999999999766678899999999998877654220 00
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhh--hccCCEEEEcCccccchhHHHHHHHHcCCCeEEe
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTS--LKESDAISIRTCHEIEGDLCEYIARQYNKPVFLT 248 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 248 (471)
..++.. .....+..+.... ....+..+.-++. ... . ...++.++
T Consensus 131 ------~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~------~--~~~~~~~~ 176 (318)
T PF13528_consen 131 ------FWLPWD-------------------QDFGRLIERYIDRYHFPPADRRLALSFY-PPL------P--PFFRVPFV 176 (318)
T ss_pred ------CCcchh-------------------hhHHHHHHHhhhhccCCcccceecCCcc-ccc------c--cccccccc
Confidence 011100 0011222222211 2333333433332 110 0 11246678
Q ss_pred ccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcC-CceEEEeCCCCCCCcccccCChhH
Q 012080 249 GPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTG-LCFLIALKPPTGASTVEEAFPDGF 327 (471)
Q Consensus 249 Gp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~p~~~ 327 (471)
||+......... . .+++.|+++||..... .++++++..+ .++++. +... . .
T Consensus 177 ~p~~~~~~~~~~--------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-----~--~---- 228 (318)
T PF13528_consen 177 GPIIRPEIRELP--------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-----A--D---- 228 (318)
T ss_pred CchhcccccccC--------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-----c--c----
Confidence 887654221111 1 1345899999998542 5556665555 666666 5321 0 0
Q ss_pred HHhhCCCcEEecccc--CchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc--cccchhhHHHHHHhhcceEEeec
Q 012080 328 AERTKGRGVVCGEWV--EQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH--LGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 328 ~~~~~~~nv~~~~~~--pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
....|+.+.+|. ...++++.+++ +|||||+||++|++++|+|+|++|. +.||..||++++ ++|+|+.++.
T Consensus 229 ---~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~-~~G~~~~~~~ 302 (318)
T PF13528_consen 229 ---PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLE-ELGLGIVLSQ 302 (318)
T ss_pred ---ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHH-HCCCeEEccc
Confidence 114588888776 34679988888 9999999999999999999999999 889999999999 9999999987
Q ss_pred ccCCcccHHHHHHHHHHH
Q 012080 404 EENGWFSKESLCKAIKCV 421 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~l 421 (471)
++ ++++.|+++|+++
T Consensus 303 ~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 303 ED---LTPERLAEFLERL 317 (318)
T ss_pred cc---CCHHHHHHHHhcC
Confidence 55 9999999999875
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=7.5e-23 Score=197.98 Aligned_cols=304 Identities=14% Similarity=0.170 Sum_probs=174.4
Q ss_pred eEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCChh
Q 012080 16 PIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 16 ~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
||++. +..+.||+.|.++||++|.+ ||+|+++++......+...+ +. +..+|. +.-... .. ..+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~-----~~~~~~~p~-----~~~~~~--~~-~~~ 66 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYG-----FKVFETFPG-----IKLKGE--DG-KVN 66 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhc-----CcceeccCC-----ceEeec--CC-cCc
Confidence 57775 55666999999999999999 99999999888555554443 22 222220 100000 00 001
Q ss_pred hHHHHH---HHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 94 SINLLV---IAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 94 ~~~~~~---~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
....+. ...........+++++.+||+||+|+.+.+..+|+.+|||++.+..+...
T Consensus 67 ~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~~q~~~--------------------- 125 (321)
T TIGR00661 67 IVKTLRNKEYSPKKAIRREINIIREYNPDLIISDFEYSTVVAAKLLKIPVICISNQNYT--------------------- 125 (321)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEecchhh---------------------
Confidence 111111 11112344556788999999999998777789999999999977654221
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhh-ccCCEEEEcCccccchhHHHHHHHHcCCCeE-Ee
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSL-KESDAISIRTCHEIEGDLCEYIARQYNKPVF-LT 248 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~-~v 248 (471)
.+|.. + + . ...+..+....+ ...+......+..... ..|+.+. ..
T Consensus 126 -------~~~~~---~-----~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~ 172 (321)
T TIGR00661 126 -------RYPLK---T-----D-------L---IVYPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIKNME 172 (321)
T ss_pred -------cCCcc---c-----c-------h---hHHHHHHHHHHhccccceEeeecCCCCCC--------CCccccccCC
Confidence 11110 0 0 0 000111111112 1222222222211110 0110000 01
Q ss_pred ccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHH
Q 012080 249 GPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFA 328 (471)
Q Consensus 249 Gp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 328 (471)
+|.. ..+..++... +++.|++.+|+... ..++++++..+. +.++.... +. ..+.+
T Consensus 173 ~~~~--------~~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~-~~--~~~~~----- 227 (321)
T TIGR00661 173 GPLI--------RYDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSY-EV--AKNSY----- 227 (321)
T ss_pred Cccc--------chhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCC-CC--Ccccc-----
Confidence 1111 1112222222 24578887888632 344566654442 22332211 10 00112
Q ss_pred HhhCCCcEEeccccC--chhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEeecc
Q 012080 329 ERTKGRGVVCGEWVE--QMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLG--DQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 329 ~~~~~~nv~~~~~~p--q~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
.+|+.+.+|.| ..++|+.+++ +|||||++|++|++++|+|+|++|... ||..||+.++ +.|+|+.++..
T Consensus 228 ----~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~ 300 (321)
T TIGR00661 228 ----NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYK 300 (321)
T ss_pred ----CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChh
Confidence 24778888997 3567777877 999999999999999999999999854 8999999999 99999999874
Q ss_pred cCCcccHHHHHHHHHHHhccC
Q 012080 405 ENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+ + ++.+++.++++|+
T Consensus 301 ~---~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 301 E---L---RLLEAILDIRNMK 315 (321)
T ss_pred h---H---HHHHHHHhccccc
Confidence 3 4 6677777888777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.1e-20 Score=180.08 Aligned_cols=320 Identities=20% Similarity=0.219 Sum_probs=198.5
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCchhhh--ccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGH-KITILLPRKAQTQL--QHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh-~Vt~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+|++...++.||+.|.++|+++|.++|+ +|.+..+....+.. ... .+.++.|+.. ++...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~-----~~~~~~I~~~---~~~~~--------- 64 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY-----GIEFELIPSG---GLRRK--------- 64 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecccc-----CceEEEEecc---ccccc---------
Confidence 6778888999999999999999999999 57777665543322 222 3677777621 11110
Q ss_pred hhHHHHHHHH--HHhHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCC
Q 012080 93 SSINLLVIAM--DRCRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPV 167 (471)
Q Consensus 93 ~~~~~~~~~~--~~~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (471)
.....+...+ -.......++|++.+||+|+.- + +..+..+|..+|||.++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~------------------- 125 (357)
T COG0707 65 GSLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV------------------- 125 (357)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC-------------------
Confidence 0111111112 2234567789999999999997 5 77777788999999997654321
Q ss_pred CccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEE
Q 012080 168 TEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFL 247 (471)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~ 247 (471)
|+ ....+..+ .++.+. .++...+ ... -+.++..
T Consensus 126 ------------~G---------------------~ank~~~~------~a~~V~-~~f~~~~-~~~------~~~~~~~ 158 (357)
T COG0707 126 ------------PG---------------------LANKILSK------FAKKVA-SAFPKLE-AGV------KPENVVV 158 (357)
T ss_pred ------------cc---------------------hhHHHhHH------hhceee-ecccccc-ccC------CCCceEE
Confidence 10 01111111 122222 1222101 000 1124788
Q ss_pred ec-cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHH-HHHHHHHHHHhcCCceEEEeCCCCCCCcccccCCh
Q 012080 248 TG-PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKK-QFQELLLGLELTGLCFLIALKPPTGASTVEEAFPD 325 (471)
Q Consensus 248 vG-p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~ 325 (471)
+| |+...-. . .+..-..+.... ++++|+|.-||++...-. .+......+.. +..+++..+.+. -+
T Consensus 159 tG~Pvr~~~~-~-~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~---------~~ 225 (357)
T COG0707 159 TGIPVRPEFE-E-LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND---------LE 225 (357)
T ss_pred ecCcccHHhh-c-cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---------HH
Confidence 88 4432211 1 121111111111 467999999999753222 22223333322 466777766321 12
Q ss_pred hHHHhhCCCc-EEeccccCch-hhhcccCcceeeccCCcchHHHHHhhCCcEEeccc-c---ccchhhHHHHHHhhcceE
Q 012080 326 GFAERTKGRG-VVCGEWVEQM-PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH-L---GDQILNTRLLAEELKVAV 399 (471)
Q Consensus 326 ~~~~~~~~~n-v~~~~~~pq~-~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~-~---~DQ~~na~~v~~~~G~G~ 399 (471)
.........| +.+.+|.+.+ ++++.+|+ +||+.|.+|+.|.+++|+|+|.+|. . .||..||..++ +.|.|.
T Consensus 226 ~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~-~~gaa~ 302 (357)
T COG0707 226 ELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLE-KAGAAL 302 (357)
T ss_pred HHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHH-hCCCEE
Confidence 2233333334 7777888775 69999999 9999999999999999999999996 3 49999999999 999999
Q ss_pred EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
.++-.+ +|.++|.+.|.++++++ ++-+.|+++|+.
T Consensus 303 ~i~~~~---lt~~~l~~~i~~l~~~~-~~l~~m~~~a~~ 337 (357)
T COG0707 303 VIRQSE---LTPEKLAELILRLLSNP-EKLKAMAENAKK 337 (357)
T ss_pred Eecccc---CCHHHHHHHHHHHhcCH-HHHHHHHHHHHh
Confidence 999765 99999999999999875 333344444433
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=2.4e-19 Score=176.57 Aligned_cols=341 Identities=15% Similarity=0.131 Sum_probs=202.9
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch--hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
|+||+|...+..||...++.||++|.++||+|++++.+... ...+.. +++++.++.. +... ...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~-----g~~~~~~~~~---~~~~------~~~ 66 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKA-----GIEFHFIPSG---GLRR------KGS 66 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccC-----CCcEEEEecc---CcCC------CCh
Confidence 47899998888899999999999999999999999886531 111212 3666666521 1100 000
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
......... .-.....+.+++++.+||+|++. . ...+..+++..++|++.....
T Consensus 67 ~~~l~~~~~-~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------------- 123 (357)
T PRK00726 67 LANLKAPFK-LLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN---------------------- 123 (357)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC----------------------
Confidence 111111111 12344567788899999999999 3 444555677889999843210
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEe
Q 012080 169 EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLT 248 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 248 (471)
..+. ...++. ....+.++..+-..+ .+ .-+.++.++
T Consensus 124 ---------~~~~-------------------------~~~r~~--~~~~d~ii~~~~~~~----~~----~~~~~i~vi 159 (357)
T PRK00726 124 ---------AVPG-------------------------LANKLL--ARFAKKVATAFPGAF----PE----FFKPKAVVT 159 (357)
T ss_pred ---------CCcc-------------------------HHHHHH--HHHhchheECchhhh----hc----cCCCCEEEE
Confidence 0000 001111 112233332221110 00 234578888
Q ss_pred ccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHH-HHHHHHhcCC--ceEEEeCCCCCCCcccccCCh
Q 012080 249 GPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQE-LLLGLELTGL--CFLIALKPPTGASTVEEAFPD 325 (471)
Q Consensus 249 Gp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~-~~~al~~~~~--~~~~~~~~~~~~~~~~~~~p~ 325 (471)
|+............. .+ +...++..+|++..|+.. ...... +..+++.... .+++.++.+.. +
T Consensus 160 ~n~v~~~~~~~~~~~-~~-~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~---------~ 225 (357)
T PRK00726 160 GNPVREEILALAAPP-AR-LAGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKGDL---------E 225 (357)
T ss_pred CCCCChHhhcccchh-hh-ccCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCCcH---------H
Confidence 865433111110100 01 111122346666555542 222323 3355544332 44555554311 1
Q ss_pred hHHHhhC-CCcEEeccccC-chhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc----cccchhhHHHHHHhhcceE
Q 012080 326 GFAERTK-GRGVVCGEWVE-QMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH----LGDQILNTRLLAEELKVAV 399 (471)
Q Consensus 326 ~~~~~~~-~~nv~~~~~~p-q~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~ 399 (471)
.+.+... +-++.+.+|+. ..++++.+++ +|+|+|.++++|++++|+|+|++|. .+||..|+..+. +.|.|.
T Consensus 226 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~-~~~~g~ 302 (357)
T PRK00726 226 EVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALV-DAGAAL 302 (357)
T ss_pred HHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH-HCCCEE
Confidence 1221111 11377788884 4689999999 9999999999999999999999996 478999999999 999999
Q ss_pred EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
.++.++ ++++.|.++|.++++|+ ++++...+-+....+..+..+.++.+.+.+
T Consensus 303 ~~~~~~---~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 303 LIPQSD---LTPEKLAEKLLELLSDP-----ERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred EEEccc---CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 998744 78999999999999987 666655555555555555555555555544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=6e-18 Score=166.23 Aligned_cols=314 Identities=19% Similarity=0.191 Sum_probs=186.9
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhH
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSI 95 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (471)
+|++...++.||...+..+|+.|.++||+|++++...... .... ...+++++.+++. .... . ...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~~~~--~~~~~~~~~~~~~---~~~~------~---~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-ARLV--PKAGIPLHTIPVG---GLRR------K---GSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-hhcc--cccCCceEEEEec---CcCC------C---ChH
Confidence 5788888888999999999999999999999998764321 1100 0113666666532 0100 0 011
Q ss_pred HHHHHH--HHHhHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 96 NLLVIA--MDRCRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 96 ~~~~~~--~~~~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
..+... .-.....+.+++++.+||+|+++ . ...+..+|...++|++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------------ 121 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------------ 121 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------------
Confidence 111111 12234567778888999999997 2 555667788899998853211
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEecc
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGP 250 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp 250 (471)
.++. ...+.. ....+.+++.+-...+ + ..+.++.++|.
T Consensus 122 -------~~~~-------------------------~~~~~~--~~~~~~vi~~s~~~~~-----~---~~~~~~~~i~n 159 (350)
T cd03785 122 -------AVPG-------------------------LANRLL--ARFADRVALSFPETAK-----Y---FPKDKAVVTGN 159 (350)
T ss_pred -------CCcc-------------------------HHHHHH--HHhhCEEEEcchhhhh-----c---CCCCcEEEECC
Confidence 0000 011111 1224555544332111 1 12356788886
Q ss_pred CCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCH-HHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHH
Q 012080 251 VLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEK-KQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAE 329 (471)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 329 (471)
..........+ . .+.+...+++.+|++..|+...... +.+...+..+...+..+++.++.+ ..+. +.+.. .
T Consensus 160 ~v~~~~~~~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~~----l~~~~-~ 231 (350)
T cd03785 160 PVREEILALDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLEE----VKKAY-E 231 (350)
T ss_pred CCchHHhhhhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHHH----HHHHH-h
Confidence 54321100111 1 1222222234456665566532111 122233333333344556666643 1111 11111 1
Q ss_pred hhCCCcEEecccc-CchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc----cccchhhHHHHHHhhcceEEeecc
Q 012080 330 RTKGRGVVCGEWV-EQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH----LGDQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 330 ~~~~~nv~~~~~~-pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
.. ..|+++.+|+ +..++|+.+++ +|+++|.++++||+++|+|+|+.|. ..+|..|+..+. +.|.|..++..
T Consensus 232 ~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g~~v~~~ 307 (350)
T cd03785 232 EL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV-KAGAAVLIPQE 307 (350)
T ss_pred cc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-hCCCEEEEecC
Confidence 11 3588888888 45679999998 9999999999999999999999985 467899999999 99999999863
Q ss_pred cCCcccHHHHHHHHHHHhccC
Q 012080 405 ENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+ .+.++|.++|+++++|+
T Consensus 308 ~---~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 308 E---LTPERLAAALLELLSDP 325 (350)
T ss_pred C---CCHHHHHHHHHHHhcCH
Confidence 3 68999999999999875
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.77 E-value=6.5e-16 Score=151.66 Aligned_cols=307 Identities=16% Similarity=0.172 Sum_probs=170.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh--hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT--QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
||+|++.+..||+.....||++|.++||+|++++.+.... ..+.. +++++.++.. .. . ... ...
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~-----g~~~~~i~~~---~~-~----~~~-~~~ 67 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKA-----GIEFYFIPVG---GL-R----RKG-SFR 67 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccC-----CCceEEEecc---Cc-C----CCC-hHH
Confidence 8999999999999988899999999999999998744211 11112 2666666521 00 0 000 111
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
.+..... .-.....+.+++++.+||+|++. . ...+..+++.+++|.+.....
T Consensus 68 ~l~~~~~-~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~------------------------ 122 (348)
T TIGR01133 68 LIKTPLK-LLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN------------------------ 122 (348)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC------------------------
Confidence 1111111 12234567788999999999998 3 344555778889998732110
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEecc
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGP 250 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp 250 (471)
. .+ . ...++. .+..+.+++.+-.. .++ + ...++|.
T Consensus 123 ------~-~~---------------------~----~~~~~~--~~~~d~ii~~~~~~-----~~~----~--~~~~i~n 157 (348)
T TIGR01133 123 ------A-VP---------------------G----LTNKLL--SRFAKKVLISFPGA-----KDH----F--EAVLVGN 157 (348)
T ss_pred ------C-Cc---------------------c----HHHHHH--HHHhCeeEECchhH-----hhc----C--CceEEcC
Confidence 0 00 0 001111 12244444432211 111 1 2255563
Q ss_pred CCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHH---hcCCceEEEeCCCCCCCcccccCChhH
Q 012080 251 VLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLE---LTGLCFLIALKPPTGASTVEEAFPDGF 327 (471)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~p~~~ 327 (471)
....... ..+.. ...+.-.+++.+|.+.-|+... ......+..+++ ..+.++++..+.+ . . +.+
T Consensus 158 ~v~~~~~-~~~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~-~-------~-~~l 224 (348)
T TIGR01133 158 PVRQEIR-SLPVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN-D-------L-EKV 224 (348)
T ss_pred CcCHHHh-cccch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc-h-------H-HHH
Confidence 3221100 00000 1122111223344443345432 221222233443 3345565544421 1 1 122
Q ss_pred HHhhCCCcE-Eecccc--CchhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc---ccchhhHHHHHHhhcceEEe
Q 012080 328 AERTKGRGV-VCGEWV--EQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL---GDQILNTRLLAEELKVAVEV 401 (471)
Q Consensus 328 ~~~~~~~nv-~~~~~~--pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l 401 (471)
.+.....++ .+..|. +..++++.+++ +|+++|.++++||+++|+|+|+.|.- .+|..|+..++ ..|.|..+
T Consensus 225 ~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G~~~ 301 (348)
T TIGR01133 225 KNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAGLVI 301 (348)
T ss_pred HHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCEEEE
Confidence 221111121 112233 45678999998 99999988999999999999999863 57888999999 99999998
Q ss_pred ecccCCcccHHHHHHHHHHHhccC
Q 012080 402 EREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+..+ .+.+.|.++|+++++|+
T Consensus 302 ~~~~---~~~~~l~~~i~~ll~~~ 322 (348)
T TIGR01133 302 RQKE---LLPEKLLEALLKLLLDP 322 (348)
T ss_pred eccc---CCHHHHHHHHHHHHcCH
Confidence 8633 68999999999999886
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.76 E-value=1.9e-16 Score=145.30 Aligned_cols=341 Identities=17% Similarity=0.206 Sum_probs=204.0
Q ss_pred CCCCCeEEEecCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWF--AVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 11 ~~~~~~il~~~~~--~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
..++.+|+|++.. +.||+.++..||+.|++. |.+|++++...-..-. ..+.+++|+.+|.- .....+...
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F----~~~~gVd~V~LPsl--~k~~~G~~~ 79 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGF----PGPAGVDFVKLPSL--IKGDNGEYG 79 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCC----CCcccCceEecCce--EecCCCcee
Confidence 4566799999774 457999999999999999 9999999877643322 23345899988721 111111112
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
..+...+ .....+....-+...++..+||++|+|..+.|.. .+. .|.+ .+...
T Consensus 80 ~~d~~~~----l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~Glr-~EL--~ptL-----------~yl~~--------- 132 (400)
T COG4671 80 LVDLDGD----LEETKKLRSQLILSTAETFKPDIFIVDKFPFGLR-FEL--LPTL-----------EYLKT--------- 132 (400)
T ss_pred eeecCCC----HHHHHHHHHHHHHHHHHhcCCCEEEEeccccchh-hhh--hHHH-----------HHHhh---------
Confidence 2222112 2333444555677888999999999996666621 110 0100 00000
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccc---cCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHH-HHHHcC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFIS---FPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEY-IARQYN 242 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~ 242 (471)
.+ +... +.-..+.+.+... ++....+...++. -+.+++...+++..+...+ +.+...
T Consensus 133 ----------~~-t~~v--L~lr~i~D~p~~~~~~w~~~~~~~~I~r~------yD~V~v~GdP~f~d~~~~~~~~~~i~ 193 (400)
T COG4671 133 ----------TG-TRLV--LGLRSIRDIPQELEADWRRAETVRLINRF------YDLVLVYGDPDFYDPLTEFPFAPAIR 193 (400)
T ss_pred ----------cC-Ccce--eehHhhhhchhhhccchhhhHHHHHHHHh------heEEEEecCccccChhhcCCccHhhh
Confidence 00 0000 1111111121111 1111123333333 4555665555443211111 111233
Q ss_pred CCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-cCCc--eEEEeCCCCCCCcc
Q 012080 243 KPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL-TGLC--FLIALKPPTGASTV 319 (471)
Q Consensus 243 ~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~~~~~~~~~~~~~~ 319 (471)
.++.++|.+..+-+..+.|. ... +.+--|+||-|... .-.+.+...+.|-.- .+.+ .+.+.++
T Consensus 194 ~k~~ytG~vq~~~~~~~~p~-----~~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP------- 259 (400)
T COG4671 194 AKMRYTGFVQRSLPHLPLPP-----HEA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGP------- 259 (400)
T ss_pred hheeEeEEeeccCcCCCCCC-----cCC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCC-------
Confidence 57899998832211111111 111 23448889888763 345566666655432 4444 5666553
Q ss_pred cccCChhHHHh-----hCCCcEEeccccCc-hhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc---ccchhhHHH
Q 012080 320 EEAFPDGFAER-----TKGRGVVCGEWVEQ-MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL---GDQILNTRL 390 (471)
Q Consensus 320 ~~~~p~~~~~~-----~~~~nv~~~~~~pq-~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~~ 390 (471)
..|....++ .+.+++.+..|-.+ ..+++-++. +|+-||+||++|-|++|+|.+++|.. .||-.-|+|
T Consensus 260 --~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~R 335 (400)
T COG4671 260 --FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQR 335 (400)
T ss_pred --CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHH
Confidence 366543332 23478888888876 568888888 99999999999999999999999974 499999999
Q ss_pred HHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 391 LAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 391 v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
++ ++|+.-++..++ +|+..+.++|...+.-+
T Consensus 336 l~-~LGL~dvL~pe~---lt~~~La~al~~~l~~P 366 (400)
T COG4671 336 LE-ELGLVDVLLPEN---LTPQNLADALKAALARP 366 (400)
T ss_pred HH-hcCcceeeCccc---CChHHHHHHHHhcccCC
Confidence 99 999999999865 99999999999988733
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=5.3e-16 Score=153.41 Aligned_cols=350 Identities=16% Similarity=0.104 Sum_probs=203.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
.+|+|...++.||+.|. +|+++|+++|++++|++.... .++..|... .+++..++. -++. ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~~-~~~~~~l~v---~G~~-----------~~ 67 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCEV-LYSMEELSV---MGLR-----------EV 67 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCcc-ccChHHhhh---ccHH-----------HH
Confidence 47899999999999999 999999999999999987643 233333111 133333321 0100 11
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccc--hHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYW--MATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
+..+.. .......+.+++++.+||+||.- + ++. ...+|+.+|||++.+.+...+.
T Consensus 68 l~~~~~-~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa-------------------- 126 (385)
T TIGR00215 68 LGRLGR-LLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA-------------------- 126 (385)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh--------------------
Confidence 111111 22344578888999999998875 5 433 2337889999998664221100
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEecc
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGP 250 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp 250 (471)
++ +...+.+.+. .+.+++.. ..+ .+++.. .+.++.++|.
T Consensus 127 --------w~---------------------~~~~r~l~~~------~d~v~~~~--~~e---~~~~~~-~g~~~~~vGn 165 (385)
T TIGR00215 127 --------WR---------------------KWRAKKIEKA------TDFLLAIL--PFE---KAFYQK-KNVPCRFVGH 165 (385)
T ss_pred --------cC---------------------cchHHHHHHH------HhHhhccC--CCc---HHHHHh-cCCCEEEECC
Confidence 00 0011122211 22222221 112 122222 3346778983
Q ss_pred -CCCCCCCC-CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-----CCceEEEeCCCCCCCcccccC
Q 012080 251 -VLHEPAKT-PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT-----GLCFLIALKPPTGASTVEEAF 323 (471)
Q Consensus 251 -~~~~~~~~-~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~~~~~~~~~~~~~~~~~~ 323 (471)
+....... ....+..+-+.-.+++++|.+--||....-......++++++.. +.++++....+...+..
T Consensus 166 Pv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~---- 241 (385)
T TIGR00215 166 PLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQF---- 241 (385)
T ss_pred chhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHH----
Confidence 32221110 12222323233333456888877887542122334455444322 33455544322111110
Q ss_pred ChhHHHhhC-CCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEec----cccc---------cchhhHH
Q 012080 324 PDGFAERTK-GRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLV----PHLG---------DQILNTR 389 (471)
Q Consensus 324 p~~~~~~~~-~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~----P~~~---------DQ~~na~ 389 (471)
+.+..... ...+.+..+ ...++++.+|+ +|+-.|..|+ |++++|+|+|++ |+.. +|..|+.
T Consensus 242 -~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~n 316 (385)
T TIGR00215 242 -EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPN 316 (385)
T ss_pred -HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccH
Confidence 11111111 112332212 33568889998 9999999887 999999999999 8632 3888999
Q ss_pred HHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 012080 390 LLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKES----EVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQ 458 (471)
Q Consensus 390 ~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~----~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~ 458 (471)
.+. ..++...+.-++ +|++.|.+++.++|.| . +..+.+++..+++++.+.+.|.+.++.+.+.+
T Consensus 317 il~-~~~~~pel~q~~---~~~~~l~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 317 ILA-NRLLVPELLQEE---CTPHPLAIALLLLLEN-GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred Hhc-CCccchhhcCCC---CCHHHHHHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 999 888887776544 9999999999999987 5 67778999999999999766766666665543
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=1.6e-14 Score=143.62 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=98.2
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHHHh-cCCceEEEeCCCCCCCcccccCChhHHHhh--CCCcEEeccccCch-hhh
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGLEL-TGLCFLIALKPPTGASTVEEAFPDGFAERT--KGRGVVCGEWVEQM-PIL 348 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~-~lL 348 (471)
++++|++.-|+.... ..+..+++++.. .+.+++++.+.+.. +-+.+.... ...|+.+.+|+++. +++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-------LKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-------HHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 345777767776532 234556666643 34566666552100 111222111 12478888999874 799
Q ss_pred cccCcceeeccCCcchHHHHHhhCCcEEec-cccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCch
Q 012080 349 EHSSVGCFVSHCGFGSMWESLMSDCQIVLV-PHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESE 427 (471)
Q Consensus 349 ~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~ 427 (471)
..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..++ +.|+|+.. -+.++|.++|.++++|+ +
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~-~~G~~~~~-------~~~~~l~~~i~~ll~~~-~ 340 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE-RKGAAVVI-------RDDEEVFAKTEALLQDD-M 340 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH-hCCcEEEE-------CCHHHHHHHHHHHHCCH-H
Confidence 99998 99999988999999999999985 66777889999999 88988753 25688999999999885 2
Q ss_pred hhHHHHHHH
Q 012080 428 VGNVVRRNH 436 (471)
Q Consensus 428 ~~~~~~~~a 436 (471)
..+.+++++
T Consensus 341 ~~~~m~~~~ 349 (380)
T PRK13609 341 KLLQMKEAM 349 (380)
T ss_pred HHHHHHHHH
Confidence 333344433
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.66 E-value=1.9e-14 Score=143.09 Aligned_cols=344 Identities=15% Similarity=0.125 Sum_probs=179.3
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
++|+|...++.||+.|.. ++++|+++++++.+++.... .++..+ .+..+.++.++. . . +
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~--------~-------g--~ 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG-CESLFDMEELAV--------M-------G--L 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC-CccccCHHHhhh--------c-------c--H
Confidence 589999999999999999 99999998888888775442 233222 111133332221 0 0 1
Q ss_pred HHHHHHH--HHHhHHHHHHHHHhCCCcEEEEc-C-ccchH--HHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 95 INLLVIA--MDRCRGQVEAVIKAAKPRLLFYD-I-AYWMA--TISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 95 ~~~~~~~--~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
.+.+... .-.....+.+++++.+||+|++- . ..+.. ..|+.+|||++.+.....+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~------------------- 121 (380)
T PRK00025 61 VEVLPRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVW------------------- 121 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchh-------------------
Confidence 1111111 22345677888999999998774 4 33333 3467789998865321100
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEe
Q 012080 169 EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLT 248 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 248 (471)
...+ + ...+. ....+.+++.+-. + .+.+.. .+.++.++
T Consensus 122 --------~~~~---------------------~----~~~~~---~~~~d~i~~~~~~--~---~~~~~~-~g~~~~~~ 159 (380)
T PRK00025 122 --------AWRQ---------------------G----RAFKI---AKATDHVLALFPF--E---AAFYDK-LGVPVTFV 159 (380)
T ss_pred --------hcCc---------------------h----HHHHH---HHHHhhheeCCcc--C---HHHHHh-cCCCeEEE
Confidence 0000 0 01111 1223344443321 1 122222 22347788
Q ss_pred cc-CCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCCceEEEeCCCCCCCccccc
Q 012080 249 GP-VLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGLCFLIALKPPTGASTVEEA 322 (471)
Q Consensus 249 Gp-~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~ 322 (471)
|. +...........++.+.+.-.+++++|++..||...........++++++. .+.+++++.+.+..
T Consensus 160 G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~------- 232 (380)
T PRK00025 160 GHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKR------- 232 (380)
T ss_pred CcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhh-------
Confidence 83 322111011122333333322234466666666543211223444444432 23456665431111
Q ss_pred CChhHHHhhCC---CcEEeccccC-chhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccc--------cchhh---
Q 012080 323 FPDGFAERTKG---RGVVCGEWVE-QMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLG--------DQILN--- 387 (471)
Q Consensus 323 ~p~~~~~~~~~---~nv~~~~~~p-q~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~--------DQ~~n--- 387 (471)
-+.+.+.... -++.+. -+ -..+++.+++ +|+-+|.+++ |++++|+|+|+.|-.. .|..|
T Consensus 233 -~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~ 306 (380)
T PRK00025 233 -REQIEEALAEYAGLEVTLL--DGQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYV 306 (380)
T ss_pred -HHHHHHHHhhcCCCCeEEE--cccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCee
Confidence 1112221111 123332 22 3568889999 9999998877 9999999999995332 12111
Q ss_pred --HHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 012080 388 --TRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQN 459 (471)
Q Consensus 388 --a~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~ 459 (471)
+..+. ..+++..+... ..++++|.++|.++++|+ +..+.+.++++.+.+.+ ..++..+.++.+.+.
T Consensus 307 ~l~~~~~-~~~~~~~~~~~---~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 307 SLPNLLA-GRELVPELLQE---EATPEKLARALLPLLADG-ARRQALLEGFTELHQQL-RCGADERAAQAVLEL 374 (380)
T ss_pred ehHHHhc-CCCcchhhcCC---CCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 22233 33333333322 378999999999999985 55566677777777776 445444444444443
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=4.2e-14 Score=133.49 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=76.7
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHh--cCCceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccCch-hhhcc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLEL--TGLCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQM-PILEH 350 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~-~lL~~ 350 (471)
+.|+++||..-... ....+++++.. .+.++.++++++.. ..+.+.... ..+|+.+..++++. ++++.
T Consensus 171 ~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~~~-------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~ 241 (279)
T TIGR03590 171 RRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSSNP-------NLDELKKFAKEYPNIILFIDVENMAELMNE 241 (279)
T ss_pred CeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCCCc-------CHHHHHHHHHhCCCEEEEeCHHHHHHHHHH
Confidence 57999999764422 34455666644 34577888775321 112222221 23578888899986 79999
Q ss_pred cCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHH
Q 012080 351 SSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRL 390 (471)
Q Consensus 351 ~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~ 390 (471)
+++ +||+|| +|++|++++|+|+|++|...+|..||+.
T Consensus 242 aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 242 ADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 999999 9999999999999999999999999975
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=2e-13 Score=135.82 Aligned_cols=164 Identities=10% Similarity=0.131 Sum_probs=109.3
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHH-Hh-cCCceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccCch-hhh
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGL-EL-TGLCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQM-PIL 348 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~-~lL 348 (471)
++++|++..|+... ...+..+++++ +. .+.+++++.+.+. . +-+.+.... ..+++.+.+|+++. +++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~---~----l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK---E----LKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH---H----HHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 35688888888753 23344445443 22 3456666655320 0 111222221 23578888899764 699
Q ss_pred cccCcceeeccCCcchHHHHHhhCCcEEec-cccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCch
Q 012080 349 EHSSVGCFVSHCGFGSMWESLMSDCQIVLV-PHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESE 427 (471)
Q Consensus 349 ~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~ 427 (471)
+.+++ +|+..|..|+.||+++|+|+|+. |.-+.|..|+..++ +.|+|+... +.+++.++|.++++|+ +
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~-~~G~g~~~~-------~~~~l~~~i~~ll~~~-~ 340 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFE-EKGFGKIAD-------TPEEAIKIVASLTNGN-E 340 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHH-hCCcEEEeC-------CHHHHHHHHHHHhcCH-H
Confidence 99999 99998888999999999999998 77677789999999 999997643 6778999999999875 4
Q ss_pred hhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 428 VGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 428 ~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
..+.|++|++++.+ ..+..+.++.+++.+
T Consensus 341 ~~~~m~~~~~~~~~----~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 341 QLTNMISTMEQDKI----KYATQTICRDLLDLI 369 (391)
T ss_pred HHHHHHHHHHHhcC----CCCHHHHHHHHHHHh
Confidence 44555555555433 233344445555444
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.52 E-value=3.5e-12 Score=126.69 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=70.0
Q ss_pred CcEEeccccCch-hhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccch-hhHHHHHHhhcceEEeecccCCcccH
Q 012080 334 RGVVCGEWVEQM-PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQI-LNTRLLAEELKVAVEVEREENGWFSK 411 (471)
Q Consensus 334 ~nv~~~~~~pq~-~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~t~ 411 (471)
.++.+.+|+++. ++++.+|+ +|+.+|.+|++||+++|+|+|+.+....|. .|+..+. +.|.|+.+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec-------CCH
Confidence 467888899864 68999999 999999999999999999999998766675 7999999 89999754 377
Q ss_pred HHHHHHHHHHhcc
Q 012080 412 ESLCKAIKCVMDK 424 (471)
Q Consensus 412 ~~l~~ai~~ll~~ 424 (471)
++|.++|.+++.|
T Consensus 335 ~~la~~i~~ll~~ 347 (382)
T PLN02605 335 KEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHHHHHHcC
Confidence 8899999999987
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.48 E-value=3e-15 Score=130.67 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=95.3
Q ss_pred EEEEEeCccccCCHH-HHHHHHHHHHh--cCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccC-chhhhccc
Q 012080 276 VVYCAFGSQIILEKK-QFQELLLGLEL--TGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVE-QMPILEHS 351 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~-~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~p-q~~lL~~~ 351 (471)
+|+|+.||.....-. .+..+...+.. ...++++..|.. ..... ...+. ....++.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-~~~~~----~~~~~--~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-NYEEL----KIKVE--NFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-ECHHH----CCCHC--CTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-cHHHH----HHHHh--ccCCcEEEEechhhHHHHHHHc
Confidence 489999988542111 12222332222 247788888754 11111 11110 0115788889999 67899999
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEeccccc----cchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHLG----DQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
++ +|||||.||++|++++|+|+|++|... +|..||..++ +.|+|..+.... .+.++|.++|.+++.++
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~-~~g~~~~~~~~~---~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELA-KKGAAIMLDESE---LNPEELAEAIEELLSDP 145 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHH-HCCCCCCSECCC----SCCCHHHHHHCHCCCH
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHH-HcCCccccCccc---CCHHHHHHHHHHHHcCc
Confidence 99 999999999999999999999999988 9999999999 999999999754 77899999999999875
No 43
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=2.7e-10 Score=111.74 Aligned_cols=324 Identities=11% Similarity=0.078 Sum_probs=172.1
Q ss_pred eEEEec--C-CC-ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 16 PIVMLP--W-FA-VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 16 ~il~~~--~-~~-~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
||++++ + +. .|+...+..|+++|.++||+|++++.......... .....+..+.. +.. . ...
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~-~---~~~ 66 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP----ARVVPVPSVPL------PGY-P---EIR 66 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC----CCceeeccccc------Ccc-c---ceE
Confidence 456652 2 23 68999999999999999999999998764321110 00111111110 000 0 000
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C---ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCC
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I---AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPV 167 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (471)
.. ......+...+++.+||+|++. . ...+..+++..++|++.............
T Consensus 67 ~~---------~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------- 124 (364)
T cd03814 67 LA---------LPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRY------------- 124 (364)
T ss_pred ec---------ccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhh-------------
Confidence 00 0012345556678899999877 3 23456677889999887654322110000
Q ss_pred CccccCCCCCCCCCCcccccccccccccccccCCCCc-hhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeE
Q 012080 168 TEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEG-MSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVF 246 (471)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~ 246 (471)
... ...... ..... ......+.+++.+....+ ........++.
T Consensus 125 ----------~~~------------------~~~~~~~~~~~~---~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~~ 168 (364)
T cd03814 125 ----------YGL------------------GPLSWLAWAYLR---WFHNRADRVLVPSPSLAD-----ELRARGFRRVR 168 (364)
T ss_pred ----------ccc------------------chHhHhhHHHHH---HHHHhCCEEEeCCHHHHH-----HHhccCCCcee
Confidence 000 000000 11111 123456777776554322 22222233455
Q ss_pred EeccCCCCC---CCCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHh-cCCceEEEeCCCCCCCcccc
Q 012080 247 LTGPVLHEP---AKTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLEL-TGLCFLIALKPPTGASTVEE 321 (471)
Q Consensus 247 ~vGp~~~~~---~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~ 321 (471)
.+++..... ...........+- . .+..+++..|+... ...+.+.+.+..+.. .+.++++. +.+...
T Consensus 169 ~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~~~----- 239 (364)
T cd03814 169 LWPRGVDTELFHPRRRDEALRARLG-P--PDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGPAR----- 239 (364)
T ss_pred ecCCCccccccCcccccHHHHHHhC-C--CCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCchH-----
Confidence 554322211 1111111122222 1 23366777777643 233444444444432 23444444 322111
Q ss_pred cCChhHHHhhCCCcEEeccccCchh---hhcccCcceeeccCC----cchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 012080 322 AFPDGFAERTKGRGVVCGEWVEQMP---ILEHSSVGCFVSHCG----FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE 394 (471)
Q Consensus 322 ~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~~~v~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~ 394 (471)
+.+. ....|+.+.+|+++.+ ++..+++ +|..+. .++++||+++|+|+|+.+.. .+...++ .
T Consensus 240 ---~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~-~ 307 (364)
T cd03814 240 ---ARLE--ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVT-D 307 (364)
T ss_pred ---HHHh--ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhhc-C
Confidence 1111 2346788888998765 7888888 776654 47899999999999987744 3556667 7
Q ss_pred hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 395 LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 395 ~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
.+.|..++. -+.+++.++|.+++.|+ +..+.+.+++++
T Consensus 308 ~~~g~~~~~-----~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~ 345 (364)
T cd03814 308 GENGLLVEP-----GDAEAFAAALAALLADP-ELRRRMAARARA 345 (364)
T ss_pred CcceEEcCC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHH
Confidence 788988876 56788999999999986 333334444433
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.45 E-value=5.9e-11 Score=117.68 Aligned_cols=356 Identities=13% Similarity=0.073 Sum_probs=185.9
Q ss_pred ccCHHHHHHHHHHHHh--CCCeEE---EEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHH
Q 012080 25 VGHMTPFLHLSNKLAE--KGHKIT---ILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLV 99 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (471)
+|-=.-.++||++|++ .|++|. |+++..-.+ +.. +.... ++ ..++.+.-. .......+.
T Consensus 7 hged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~-----ip~~g-~~---~~~~sgg~~----~~~~~~~~~ 70 (396)
T TIGR03492 7 HGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLG-----IPIIG-PT---KELPSGGFS----YQSLRGLLR 70 (396)
T ss_pred chHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCC-----CceeC-CC---CCCCCCCcc----CCCHHHHHH
Confidence 5655667889999998 699999 998886432 111 21111 11 122222111 112333344
Q ss_pred HHHH-H--hHHHHHHHHHhC--CCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCC
Q 012080 100 IAMD-R--CRGQVEAVIKAA--KPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAM 174 (471)
Q Consensus 100 ~~~~-~--~~~~l~~~l~~~--~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 174 (471)
+... . .......++++. +||+||.--.+....+|..+|+|++++.+.-.-.. +.+
T Consensus 71 ~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v~~~aA~~~~~p~~~~~~~esn~~--------------------~~~ 130 (396)
T TIGR03492 71 DLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIVPLLFAWLSGKPYAFVGTAKSDYY--------------------WES 130 (396)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHHHHHHHHHcCCCceEEEeecccee--------------------ecC
Confidence 4333 1 222334456677 99999998433378889999999998554321100 000
Q ss_pred CCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEec-cCCC
Q 012080 175 PPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTG-PVLH 253 (471)
Q Consensus 175 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG-p~~~ 253 (471)
. .+.+... .+..++ +..+..+++..-..+.++.+++.. + . ..++++. .+.++.++| |+..
T Consensus 131 ~-~~~~~~~------~~~~~~------G~~~~p~e~n~l~~~~a~~v~~~~-~-~---t~~~l~~-~g~k~~~vGnPv~d 191 (396)
T TIGR03492 131 G-PRRSPSD------EYHRLE------GSLYLPWERWLMRSRRCLAVFVRD-R-L---TARDLRR-QGVRASYLGNPMMD 191 (396)
T ss_pred C-CCCccch------hhhccC------CCccCHHHHHHhhchhhCEEeCCC-H-H---HHHHHHH-CCCeEEEeCcCHHh
Confidence 0 1111100 001111 111111121111123345555433 1 1 2333433 335899999 5443
Q ss_pred CCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh----cCCceEEEeCCCCCCCcccccCCh-hHH
Q 012080 254 EPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL----TGLCFLIALKPPTGASTVEEAFPD-GFA 328 (471)
Q Consensus 254 ~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 328 (471)
.-.. .... -++ +++++|.+--||....-...+..++++++. .+..|++.+.+..+.+.....+.+ +..
T Consensus 192 ~l~~-~~~~----~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~ 264 (396)
T TIGR03492 192 GLEP-PERK----PLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQ 264 (396)
T ss_pred cCcc-cccc----ccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCce
Confidence 3111 1111 122 234578888888754222334455555543 356777776433222111110000 000
Q ss_pred H---------hhCCCcEEeccccCc-hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh---
Q 012080 329 E---------RTKGRGVVCGEWVEQ-MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL--- 395 (471)
Q Consensus 329 ~---------~~~~~nv~~~~~~pq-~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~--- 395 (471)
. .....++.+..+..+ .++++.+++ +|+-.|..| .|+...|+|+|++|.-..|. |+...+ +.
T Consensus 265 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~-~~~~l 339 (396)
T TIGR03492 265 LEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAE-AQSRL 339 (396)
T ss_pred ecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHH-hhHhh
Confidence 0 001123444444433 579999999 999999766 99999999999999766776 988777 64
Q ss_pred -cceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHH-HHHhhhcCCCchhHHHHHHH
Q 012080 396 -KVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHA-KWKGTLVSPGFVSGYIDKFV 457 (471)
Q Consensus 396 -G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~-~l~~~~~~~~~~~~~i~~~~ 457 (471)
|.++.+.. .+.+.|.+++.+++.|+ ...++.. ..++.+.+.+...+.++.+.
T Consensus 340 ~g~~~~l~~-----~~~~~l~~~l~~ll~d~-----~~~~~~~~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 340 LGGSVFLAS-----KNPEQAAQVVRQLLADP-----ELLERCRRNGQERMGPPGASARIAESIL 393 (396)
T ss_pred cCCEEecCC-----CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777664 45599999999999886 5444333 44445544344444444333
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=2.6e-12 Score=108.44 Aligned_cols=119 Identities=16% Similarity=0.284 Sum_probs=80.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHH
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSIN 96 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (471)
|+|++.|+.||++|+++||++|++|||+|++++++.+++.+++.| ++|+.++.+ ..++.. .....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~G-----l~~~~~~~~--~~~~~~--------~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAG-----LEFVPIPGD--SRLPRS--------LEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT------EEEESSSC--GGGGHH--------HHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccC-----ceEEEecCC--cCcCcc--------cchhh
Confidence 789999999999999999999999999999999999999998888 999998722 000000 00111
Q ss_pred HHHH------HHHHhHHHHHHHHH--------hCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHH
Q 012080 97 LLVI------AMDRCRGQVEAVIK--------AAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAAS 150 (471)
Q Consensus 97 ~~~~------~~~~~~~~l~~~l~--------~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~ 150 (471)
.+.. ......+.+.+... ....|+++.+ ....+..+|++++||++.....+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~ 134 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFA 134 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGS
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCc
Confidence 1111 11111222222111 1257888888 68889999999999999988776543
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.35 E-value=2.8e-09 Score=104.29 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=85.5
Q ss_pred CcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchh---hhc
Q 012080 274 SSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMP---ILE 349 (471)
Q Consensus 274 ~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL~ 349 (471)
...+++..|+... ...+.+.+.+..+...+.++++. +.+.... ..........++.+.+|+++.+ ++.
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~-------~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 261 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIV-GNGLELE-------EESYELEGDPRVEFLGAYPQEEIDDFYA 261 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEE-cCchhhh-------HHHHhhcCCCeEEEeCCCCHHHHHHHHH
Confidence 3467777887654 22233333333332234555554 3221110 0000002346888889997654 688
Q ss_pred ccCcceeec----cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVS----HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~It----HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|. ..|. .+++||+++|+|+|+.+. ..+...+. .-+.|..++. -+.+++.++|.++++|
T Consensus 262 ~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~-~~~~g~~~~~-----~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 262 EIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVR-DGVNGLLFPP-----GDAEDLAAALERLIDD 329 (359)
T ss_pred hCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhc-CCCcEEEECC-----CCHHHHHHHHHHHHhC
Confidence 8888 662 2344 589999999999998654 34566666 6667888876 4689999999999997
Q ss_pred CchhhHHHHHHH
Q 012080 425 ESEVGNVVRRNH 436 (471)
Q Consensus 425 ~~~~~~~~~~~a 436 (471)
+ +..+.+.+++
T Consensus 330 ~-~~~~~~~~~~ 340 (359)
T cd03823 330 P-DLLERLRAGI 340 (359)
T ss_pred h-HHHHHHHHhH
Confidence 5 3333344433
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.32 E-value=6e-09 Score=106.34 Aligned_cols=337 Identities=13% Similarity=0.047 Sum_probs=175.9
Q ss_pred CCCCeEEEecCCC-----ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFA-----VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 12 ~~~~~il~~~~~~-----~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
.+++||+++..+. .|=-+.+..+++.|.++||+|+++++..... +.. .++..+.+.. ...+..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~--~~~----~g~~v~~~~~---~~~~~~--- 123 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVP--QEF----HGAKVIGSWS---FPCPFY--- 123 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCC--ccc----cCceeeccCC---cCCccC---
Confidence 5668999883321 3445688999999999999999999865321 110 0133222110 000000
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C---ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCC
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I---AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVP 162 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~ 162 (471)
...... . .....+..++++.+||+|.+. . ...+..+|+..++|+|.........
T Consensus 124 -~~~~~~--------~-~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~------------ 181 (465)
T PLN02871 124 -QKVPLS--------L-ALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPV------------ 181 (465)
T ss_pred -CCceee--------c-cCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchh------------
Confidence 000000 0 011245667788899999776 2 2334456788999998654321100
Q ss_pred CCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc-
Q 012080 163 KDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY- 241 (471)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~- 241 (471)
..+... + ..+ .. ....+.+. .....+.+++.+... .+.+....
T Consensus 182 ---------------~~~~~~--~-----~~~------~~-~~~~~~r~--~~~~ad~ii~~S~~~-----~~~l~~~~~ 225 (465)
T PLN02871 182 ---------------YIPRYT--F-----SWL------VK-PMWDIIRF--LHRAADLTLVTSPAL-----GKELEAAGV 225 (465)
T ss_pred ---------------hhhccc--c-----hhh------HH-HHHHHHHH--HHhhCCEEEECCHHH-----HHHHHHcCC
Confidence 000000 0 000 00 00011111 134567777655431 22232222
Q ss_pred --CCCeEEeccCCCCCC--CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCC
Q 012080 242 --NKPVFLTGPVLHEPA--KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGA 316 (471)
Q Consensus 242 --~~~v~~vGp~~~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~ 316 (471)
+.++..+..-..... ......+...-+....+...+++..|++.. ...+..++++++.. +.+++++ |.+.
T Consensus 226 ~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~-- 300 (465)
T PLN02871 226 TAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGP-- 300 (465)
T ss_pred CCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCCh--
Confidence 234444432111110 001111222212111112355566687743 23355566666554 4555544 3211
Q ss_pred CcccccCChhHHHhhCCCcEEeccccCchh---hhcccCcceeeccC----CcchHHHHHhhCCcEEeccccccchhhHH
Q 012080 317 STVEEAFPDGFAERTKGRGVVCGEWVEQMP---ILEHSSVGCFVSHC----GFGSMWESLMSDCQIVLVPHLGDQILNTR 389 (471)
Q Consensus 317 ~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~~~v~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~ 389 (471)
.-+.+.......++.+.+|+|+.+ +++.+++ ||.-. -..+++||+++|+|+|+.... ....
T Consensus 301 ------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~e 368 (465)
T PLN02871 301 ------YREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPD 368 (465)
T ss_pred ------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHh
Confidence 112233333345788889998644 7788888 77432 235789999999999987642 3344
Q ss_pred HHHHh---hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhh
Q 012080 390 LLAEE---LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 390 ~v~~~---~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
.++ . -+.|..++. -+.+++.++|.++++|+ +..+.+.+++++..+.
T Consensus 369 iv~-~~~~~~~G~lv~~-----~d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~ 417 (465)
T PLN02871 369 IIP-PDQEGKTGFLYTP-----GDVDDCVEKLETLLADP-ELRERMGAAAREEVEK 417 (465)
T ss_pred hhh-cCCCCCceEEeCC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHh
Confidence 455 5 677888876 47789999999999885 5556677777765543
No 48
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.30 E-value=5.4e-09 Score=102.64 Aligned_cols=341 Identities=11% Similarity=0.088 Sum_probs=172.4
Q ss_pred eEEEe----cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 16 PIVML----PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 16 ~il~~----~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
||+++ +....|+......++++|.++||+|+++++........... .....+. . . .
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~------~--~-------~ 60 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV-----VVVRPFR------V--P-------T 60 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc-----ccccccc------c--c-------c
Confidence 45555 33456899999999999999999999998776432221100 1111110 0 0 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc---cchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCC
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA---YWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPV 167 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (471)
...... .........+...++..+||+|++. .. ..+..+++..++|++.............. +.
T Consensus 61 ~~~~~~--~~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~--------- 128 (374)
T cd03817 61 FKYPDF--RLPLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYV-PL--------- 128 (374)
T ss_pred chhhhh--hccccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHH-hc---------
Confidence 000000 0001122334456778899999887 32 23445677899998866544322110000 00
Q ss_pred CccccCCCCCCCCCCcccccccccccccccccCCCCchh-HHHHHHhhhccCCEEEEcCccccchhHHHHHHHH-cCCCe
Q 012080 168 TEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMS-FYERITTSLKESDAISIRTCHEIEGDLCEYIARQ-YNKPV 245 (471)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~v 245 (471)
... ....... ...+ ......+.+++.+... .+.+... ...++
T Consensus 129 ---------~~~--------------------~~~~~~~~~~~~--~~~~~~d~i~~~s~~~-----~~~~~~~~~~~~~ 172 (374)
T cd03817 129 ---------GRL--------------------LARAVVRRKLSR--RFYNRCDAVIAPSEKI-----ADLLREYGVKRPI 172 (374)
T ss_pred ---------ccc--------------------hhHHHHHHHHHH--HHhhhCCEEEeccHHH-----HHHHHhcCCCCce
Confidence 000 0000000 1111 2245677777655531 1222221 22234
Q ss_pred EEeccCCCCCC-CCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHh--cCCceEEEeCCCCCCCcccc
Q 012080 246 FLTGPVLHEPA-KTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLEL--TGLCFLIALKPPTGASTVEE 321 (471)
Q Consensus 246 ~~vGp~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~ 321 (471)
..+.+...... .........+-+.. .++..+++..|++.. ...+.+...+..+.. .+.++++.-+ +... +
T Consensus 173 ~vi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~-~~~~----~ 246 (374)
T cd03817 173 EVIPTGIDLDRFEPVDGDDERRKLGI-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGD-GPER----E 246 (374)
T ss_pred EEcCCccchhccCccchhHHHHhcCC-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeC-CchH----H
Confidence 44443222211 00111111011111 123466677787654 233444444443333 3344554432 1110 0
Q ss_pred cCChhHHHhhCCCcEEeccccCchh---hhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 012080 322 AFPDGFAERTKGRGVVCGEWVEQMP---ILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE 394 (471)
Q Consensus 322 ~~p~~~~~~~~~~nv~~~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~ 394 (471)
.+-+.........++.+.+++|+.+ ++..+++ +|.- +...++.||+++|+|+|+... ...+..++ .
T Consensus 247 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~-~ 319 (374)
T cd03817 247 ELEELARELGLADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVA-D 319 (374)
T ss_pred HHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhee-c
Confidence 0101111111246888889998754 6778888 6633 334789999999999998653 34556666 6
Q ss_pred hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhc
Q 012080 395 LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLV 444 (471)
Q Consensus 395 ~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~ 444 (471)
-+.|..++.. +. ++.++|.++++++ +..+.+.+++++..+...
T Consensus 320 ~~~g~~~~~~-----~~-~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 320 GENGFLFPPG-----DE-ALAEALLRLLQDP-ELRRRLSKNAEESAEKFS 362 (374)
T ss_pred CceeEEeCCC-----CH-HHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHH
Confidence 6788888752 22 8999999999885 444456666666665543
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.29 E-value=6.7e-09 Score=101.18 Aligned_cols=327 Identities=13% Similarity=0.113 Sum_probs=170.5
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh-hccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ-LQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
||++++....|+......++++|.++||+|++++....... .... +++++.++... .. . ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~----~----~~ 62 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEAL-----GVKVIPIPLDR-----RG----I----NP 62 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccC-----CceEEeccccc-----cc----c----Ch
Confidence 57888776788999999999999999999999998765442 2222 26666654210 00 0 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccc
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAE 171 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 171 (471)
...+. ....+...+++.+||+|++. . ...+..+++..+.|.+.........
T Consensus 63 ~~~~~-----~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------- 116 (359)
T cd03808 63 FKDLK-----ALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGF--------------------- 116 (359)
T ss_pred HhHHH-----HHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcch---------------------
Confidence 01111 12345667788899999988 4 2233444554666655443221100
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc----CCCeEE
Q 012080 172 LAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY----NKPVFL 247 (471)
Q Consensus 172 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~----~~~v~~ 247 (471)
.... . .. .........+. .....+.+++.+... .+.+.... ...+..
T Consensus 117 -----~~~~------~-----~~------~~~~~~~~~~~--~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~~~~ 167 (359)
T cd03808 117 -----VFTS------G-----GL------KRRLYLLLERL--ALRFTDKVIFQNEDD-----RDLALKLGIIKKKKTVLI 167 (359)
T ss_pred -----hhcc------c-----hh------HHHHHHHHHHH--HHhhccEEEEcCHHH-----HHHHHHhcCCCcCceEEe
Confidence 0000 0 00 00011111111 134456777665532 22222222 122333
Q ss_pred eccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHh--cCCceEEEeCCCCCCCcccccCC
Q 012080 248 TGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLEL--TGLCFLIALKPPTGASTVEEAFP 324 (471)
Q Consensus 248 vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~p 324 (471)
.+.............. ..+++.+++..|+... ...+.+.+.+..+.. .+.++++. +.+........ .
T Consensus 168 ~~~~~~~~~~~~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~~~~~~-~- 237 (359)
T cd03808 168 PGSGVDLDRFSPSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEENPAAI-L- 237 (359)
T ss_pred cCCCCChhhcCccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcchhhHH-H-
Confidence 3322211100000000 1224477888888754 233444444444432 23444444 32221111000 0
Q ss_pred hhHHHhhCCCcEEeccccCc-hhhhcccCcceeeccC----CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceE
Q 012080 325 DGFAERTKGRGVVCGEWVEQ-MPILEHSSVGCFVSHC----GFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAV 399 (471)
Q Consensus 325 ~~~~~~~~~~nv~~~~~~pq-~~lL~~~~v~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 399 (471)
.........++.+.++..+ ..++..+++ +|.-. -.+++.||+++|+|+|+.+.. .+...+. +-+.|.
T Consensus 238 -~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~-~~~~g~ 309 (359)
T cd03808 238 -EIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVI-DGVNGF 309 (359)
T ss_pred -HHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhh-cCcceE
Confidence 0111122457777776544 468888888 66433 257899999999999986543 3455566 667888
Q ss_pred EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
.++. -+.+++.++|.+++.|+ +..+.+.+++++.
T Consensus 310 ~~~~-----~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~ 343 (359)
T cd03808 310 LVPP-----GDAEALADAIERLIEDP-ELRARMGQAARKR 343 (359)
T ss_pred EECC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 8775 46889999999999885 3333444444443
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.26 E-value=5.4e-09 Score=104.29 Aligned_cols=335 Identities=14% Similarity=0.075 Sum_probs=171.1
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 012080 25 VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDR 104 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (471)
.|.-..+..||++|+++||+|++++.......... .....++.++.++........ ....... ...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----~~~ 86 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPI-VELAPGVRVVRVPAGPAEYLP---------KEELWPY----LDE 86 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCc-cccccceEEEecccccccCCC---------hhhcchh----HHH
Confidence 47888999999999999999999986544322110 011224666665421100000 0001111 111
Q ss_pred hHHHHHHHHHhC--CCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCCCC
Q 012080 105 CRGQVEAVIKAA--KPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPAGY 179 (471)
Q Consensus 105 ~~~~l~~~l~~~--~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 179 (471)
....+.+.++.. +||+|++. . ...+..+++..++|++......... ..
T Consensus 87 ~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~---------------------------~~ 139 (398)
T cd03800 87 FADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV---------------------------KR 139 (398)
T ss_pred HHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc---------------------------CC
Confidence 233344555555 89999998 3 4455667888999988643321100 00
Q ss_pred CCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc---CCCeEEeccCCCCCC
Q 012080 180 PSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY---NKPVFLTGPVLHEPA 256 (471)
Q Consensus 180 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~v~~vGp~~~~~~ 256 (471)
... .. ... . ... ......+ ..+..++.+++.+....+ .+...+ ..++..+.+......
T Consensus 140 ~~~---~~--~~~--~----~~~-~~~~~~~--~~~~~ad~ii~~s~~~~~-----~~~~~~~~~~~~~~vi~ng~~~~~ 200 (398)
T cd03800 140 RHL---GA--ADT--Y----EPA-RRIEAEE--RLLRAADRVIASTPQEAE-----ELYSLYGAYPRRIRVVPPGVDLER 200 (398)
T ss_pred ccc---cc--ccc--c----chh-hhhhHHH--HHHhhCCEEEEcCHHHHH-----HHHHHccccccccEEECCCCCccc
Confidence 000 00 000 0 000 0001111 224557777776654222 112211 123555543332211
Q ss_pred --CCCChhh-hhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCCceEEEeCCCCCCCcccccCCh---
Q 012080 257 --KTPSEER-WDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGLCFLIALKPPTGASTVEEAFPD--- 325 (471)
Q Consensus 257 --~~~~~~~-l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~p~--- 325 (471)
....... ...+... +...+++..|+... ......+++++.. .+.+++++-+....... ....
T Consensus 201 ~~~~~~~~~~~~~~~~~--~~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~---~~~~~~~ 273 (398)
T cd03800 201 FTPYGRAEARRARLLRD--PDKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPRDDILA---MDEEELR 273 (398)
T ss_pred eecccchhhHHHhhccC--CCCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchh---hhhHHHH
Confidence 0011111 1112212 22366777888754 1223334444432 23455555432211100 0001
Q ss_pred hHHHhh-CCCcEEeccccCchh---hhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 012080 326 GFAERT-KGRGVVCGEWVEQMP---ILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV 397 (471)
Q Consensus 326 ~~~~~~-~~~nv~~~~~~pq~~---lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 397 (471)
.+.... ..+|+.+.+|+|+.+ ++..+++ ++.. |-..+++||+++|+|+|+.... .....++ +-+.
T Consensus 274 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~-~~~~ 346 (398)
T cd03800 274 ELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVV-DGVT 346 (398)
T ss_pred HHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHcc-CCCC
Confidence 111111 236888999999765 5788888 7643 2236899999999999987643 4556677 7778
Q ss_pred eEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 398 AVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 398 G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
|..++. -+.+++.++|.++++++ +..+.+.++|++.
T Consensus 347 g~~~~~-----~~~~~l~~~i~~l~~~~-~~~~~~~~~a~~~ 382 (398)
T cd03800 347 GLLVDP-----RDPEALAAALRRLLTDP-ALRRRLSRAGLRR 382 (398)
T ss_pred eEEeCC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 988875 57899999999999875 4444455555443
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=2.7e-08 Score=98.38 Aligned_cols=348 Identities=13% Similarity=0.091 Sum_probs=175.6
Q ss_pred CeEEEecCCC-ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 15 FPIVMLPWFA-VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 15 ~~il~~~~~~-~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
+||++++.|. .|.-.-...+|+.|.+.||+|++++.......... ...+.+..++.. ..+. ... ..
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~----~~~-~~- 67 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY----SPNIFFHEVEVP---QYPL----FQY-PP- 67 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh----ccCeEEEEeccc---ccch----hhc-ch-
Confidence 4777775544 46777899999999999999999987642211111 112444443311 1100 000 00
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc--cchHHHHHH-c---CCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA--YWMATISKS-L---SIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~--~~~~~~A~~-~---giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
........+.+++++.+||+|.+. .. .....++.. . ++|++..........
T Consensus 68 -------~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------- 125 (371)
T cd04962 68 -------YDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITL--------------- 125 (371)
T ss_pred -------hHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccc---------------
Confidence 011234567777888899999887 32 223334433 2 788875433211000
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH--cCCC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ--YNKP 244 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~ 244 (471)
.+.. . ......+ ......+.+++.+... .+.+... .+.+
T Consensus 126 ----------~~~~---------------------~-~~~~~~~--~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~ 166 (371)
T cd04962 126 ----------VGQD---------------------P-SFQPATR--FSIEKSDGVTAVSESL-----RQETYELFDITKE 166 (371)
T ss_pred ----------cccc---------------------c-cchHHHH--HHHhhCCEEEEcCHHH-----HHHHHHhcCCcCC
Confidence 0000 0 0000111 1234566666655432 1222222 2234
Q ss_pred eEEeccCCCCCC-CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHH---H-hcCCceEEEeCCCCCCCcc
Q 012080 245 VFLTGPVLHEPA-KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGL---E-LTGLCFLIALKPPTGASTV 319 (471)
Q Consensus 245 v~~vGp~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al---~-~~~~~~~~~~~~~~~~~~~ 319 (471)
+..++....... .........+..... +...+++.+|.... ...+..+++++ . ..+.++++. +.+.+.+.
T Consensus 167 i~vi~n~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~-G~g~~~~~- 241 (371)
T cd04962 167 IEVIPNFVDEDRFRPKPDEALKRRLGAP-EGEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLV-GDGPERSP- 241 (371)
T ss_pred EEEecCCcCHhhcCCCchHHHHHhcCCC-CCCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEE-cCCcCHHH-
Confidence 556654332211 011111221222211 13366777787654 22233333333 2 234455444 33221111
Q ss_pred cccCChhHHHhhC-CCcEEeccccCc-hhhhcccCcceee----ccCCcchHHHHHhhCCcEEeccccccchhhHHHHHH
Q 012080 320 EEAFPDGFAERTK-GRGVVCGEWVEQ-MPILEHSSVGCFV----SHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAE 393 (471)
Q Consensus 320 ~~~~p~~~~~~~~-~~nv~~~~~~pq-~~lL~~~~v~~~I----tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~ 393 (471)
+ .....+.+ ..++.+.++.++ .+++..+++ +| .-|...+++||+++|+|+|+... ...+..++
T Consensus 242 ---~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~- 310 (371)
T cd04962 242 ---A-ERLARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVK- 310 (371)
T ss_pred ---H-HHHHHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhc-
Confidence 1 11111111 346777777765 468888888 55 22344699999999999998643 34555666
Q ss_pred hhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 394 ELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 394 ~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
+-..|..++. -+.+++.++|.++++++ +..+.+++++++.. .+.-..+..++.+.+.++
T Consensus 311 ~~~~G~~~~~-----~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~---~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 311 HGETGFLVDV-----GDVEAMAEYALSLLEDD-ELWQEFSRAARNRA---AERFDSERIVPQYEALYR 369 (371)
T ss_pred CCCceEEcCC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHH
Confidence 5567877765 47888999999999875 34445555555542 222233344455554443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.25 E-value=1.7e-08 Score=101.34 Aligned_cols=349 Identities=13% Similarity=0.048 Sum_probs=173.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+..+|++++....|+-..+..+|+.|+++||+|++++........+.. ...++.++.++.. +.. .....
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~--~~~~v~~~~~~~~-----~~~----~~~~~ 70 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL--SNPNITIHPLPPP-----PQR----LNKLP 70 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh--cCCCEEEEECCCC-----ccc----cccch
Confidence 345677777777888888999999999999999999876432111100 1123777766521 000 00011
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-cc----chHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AY----WMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~----~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
....+...........+..+++..+||+|++. . .. .+..+++..++|+|..+...... ...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~--~~~----------- 137 (415)
T cd03816 71 FLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYT--ILA----------- 137 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHH--HHh-----------
Confidence 12222223333334444556677789999985 2 21 23334666899988654432111 000
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH--HcCCC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR--QYNKP 244 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~ 244 (471)
...... .........+++. ..+.++.+++.+-..- +.+.. ..+.+
T Consensus 138 ----------~~~~~~----------------~~~~~~~~~~e~~--~~~~ad~ii~vS~~~~-----~~l~~~~~~~~k 184 (415)
T cd03816 138 ----------LKLGEN----------------HPLVRLAKWYEKL--FGRLADYNLCVTKAMK-----EDLQQFNNWKIR 184 (415)
T ss_pred ----------cccCCC----------------CHHHHHHHHHHHH--HhhcCCEeeecCHHHH-----HHHHhhhccCCC
Confidence 000000 0000011122222 1344666666555321 11111 12234
Q ss_pred eEEeccCCCCC-CCCCChhhhhhcc----------------CCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-----
Q 012080 245 VFLTGPVLHEP-AKTPSEERWDKWL----------------GGFERSSVVYCAFGSQIILEKKQFQELLLGLELT----- 302 (471)
Q Consensus 245 v~~vGp~~~~~-~~~~~~~~l~~~l----------------~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~----- 302 (471)
+..+....... ........-..+. ...+++..++++.|.+.. ...+..+++|++..
T Consensus 185 i~vI~Ng~~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~ 262 (415)
T cd03816 185 ATVLYDRPPEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSAA 262 (415)
T ss_pred eeecCCCCHHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhhc
Confidence 44332111000 0000000000110 001223466777777653 22233344443221
Q ss_pred ------CCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEe-ccccCch---hhhcccCcceeec-c-----CC-cchH
Q 012080 303 ------GLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVC-GEWVEQM---PILEHSSVGCFVS-H-----CG-FGSM 365 (471)
Q Consensus 303 ------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-~~~~pq~---~lL~~~~v~~~It-H-----gG-~~s~ 365 (471)
+.++ +.+|.+...+. +-+ ..+..+-+|+++ .+|+|.. ++|..+++ +|. + -| -+++
T Consensus 263 ~~~~~~~i~l-~ivG~G~~~~~----l~~-~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~ 334 (415)
T cd03816 263 TGPKLPKLLC-IITGKGPLKEK----YLE-RIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKV 334 (415)
T ss_pred ccccCCCEEE-EEEecCccHHH----HHH-HHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHH
Confidence 1233 33343321111 111 112223345554 4588754 46888998 653 1 12 3479
Q ss_pred HHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC--chhhHHHHHHHHHHH
Q 012080 366 WESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE--SEVGNVVRRNHAKWK 440 (471)
Q Consensus 366 ~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~--~~~~~~~~~~a~~l~ 440 (471)
+||+++|+|+|+... ......++ +-+.|..++ +.++|.++|.++++|+ .+..+.|.+++++.+
T Consensus 335 ~Eama~G~PVI~s~~----~~~~eiv~-~~~~G~lv~-------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 335 VDMFGCGLPVCALDF----KCIDELVK-HGENGLVFG-------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHcCCCEEEeCC----CCHHHHhc-CCCCEEEEC-------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999999998653 35556676 777887763 5789999999999871 255666777666655
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.25 E-value=2.7e-08 Score=99.52 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=68.9
Q ss_pred CCcEEeccccCchh---hhcccCcceeecc-CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVSH-CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~ItH-gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
.++|.+.+++|+.+ +|..+++-++-+. .|. .+++||+++|+|+|+.. .......+. .-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~-~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVIT-DGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcc-cCCceEEcCC----
Confidence 46788999999765 6678888333232 333 48999999999999864 345556666 5567888776
Q ss_pred cccHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 012080 408 WFSKESLCKAIKCVMDKESEVGNVVRRNHAKWK 440 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~ 440 (471)
-+.+++.++|.++++|+ +..+.+.++|++..
T Consensus 351 -~d~~~la~~i~~ll~~~-~~~~~l~~~ar~~~ 381 (396)
T cd03818 351 -FDPDALAAAVIELLDDP-ARRARLRRAARRTA 381 (396)
T ss_pred -CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Confidence 57899999999999885 44445555555444
No 54
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.24 E-value=2.1e-08 Score=99.00 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=88.1
Q ss_pred CcEEEEEeCcccc-CCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchh---hh
Q 012080 274 SSVVYCAFGSQII-LEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMP---IL 348 (471)
Q Consensus 274 ~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~---lL 348 (471)
...+++..|+... ...+.+.+.+..+... +.++++ ++.+...+. + .........+|+.+.+++++.+ ++
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~~~~~~----~-~~~~~~~~~~~v~~~g~~~~~~~~~~~ 292 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDGPEKEE----L-KELAKALGLDNVTFLGRVPKEELPELL 292 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCcccHHH----H-HHHHHHcCCCcEEEeCCCChHHHHHHH
Confidence 3467777887754 2334444444433322 444444 332211110 1 0111123346888888998654 67
Q ss_pred cccCcceeeccCC---------cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHH
Q 012080 349 EHSSVGCFVSHCG---------FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 349 ~~~~v~~~ItHgG---------~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~ 419 (471)
..+++ +|.... -++++||+++|+|+|+.+..+. ...+. ..+.|..++. -+.+++.++|.
T Consensus 293 ~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~----~~~~~-~~~~g~~~~~-----~~~~~l~~~i~ 360 (394)
T cd03794 293 AAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES----AELVE-EAGAGLVVPP-----GDPEALAAAIL 360 (394)
T ss_pred HhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc----hhhhc-cCCcceEeCC-----CCHHHHHHHHH
Confidence 78888 664322 2347999999999999886543 33344 4477877775 47899999999
Q ss_pred HHhccCchhhHHHHHHHHHHHh
Q 012080 420 CVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 420 ~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
+++.|+ +..+.+.+++++..+
T Consensus 361 ~~~~~~-~~~~~~~~~~~~~~~ 381 (394)
T cd03794 361 ELLDDP-EERAEMGENGRRYVE 381 (394)
T ss_pred HHHhCh-HHHHHHHHHHHHHHH
Confidence 999875 444455555554443
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.24 E-value=2.6e-08 Score=97.25 Aligned_cols=311 Identities=15% Similarity=0.079 Sum_probs=163.9
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 012080 25 VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDR 104 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (471)
.|+...+..+++.|.+.||+|++++............ ...... .. . .... .........
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~------~~~~~~-----~~-------~--~~~~-~~~~~~~~~ 72 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV------GGIVVV-----RP-------P--PLLR-VRRLLLLLL 72 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee------cCccee-----cC-------C--cccc-cchhHHHHH
Confidence 6899999999999999999999999887543221100 000000 00 0 0000 000111122
Q ss_pred hHHHHHHHHHhCCCcEEEEc-CccchH--HHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCCCCCC
Q 012080 105 CRGQVEAVIKAAKPRLLFYD-IAYWMA--TISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPAGYPS 181 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D-~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~ 181 (471)
....+...++..+||+|++. ...... ..+...++|++......... ...
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----------------------------~~~ 124 (374)
T cd03801 73 LALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG----------------------------RPG 124 (374)
T ss_pred HHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhh----------------------------ccc
Confidence 33456667777899999999 433322 47788999988665443211 000
Q ss_pred CcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCC---CeEEeccCCCCCCCC
Q 012080 182 DTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK---PVFLTGPVLHEPAKT 258 (471)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~v~~vGp~~~~~~~~ 258 (471)
. . . ........... .......+.+++.+... .+.+...++. ++..+++........
T Consensus 125 ~---~--------~---~~~~~~~~~~~--~~~~~~~d~~i~~s~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 183 (374)
T cd03801 125 N---E--------L---GLLLKLARALE--RRALRRADRIIAVSEAT-----REELRELGGVPPEKITVIPNGVDTERFR 183 (374)
T ss_pred c---c--------h---hHHHHHHHHHH--HHHHHhCCEEEEecHHH-----HHHHHhcCCCCCCcEEEecCcccccccC
Confidence 0 0 0 00000011111 12345677777765532 2333333332 566665433221100
Q ss_pred CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHH---hc--CCceEEEeCCCCCCCcccccCChhHHHhhCC
Q 012080 259 PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLE---LT--GLCFLIALKPPTGASTVEEAFPDGFAERTKG 333 (471)
Q Consensus 259 ~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~---~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 333 (471)
........... ...+..+++.+|+... ...+..+++++. .. +.++++. +.+... ..+-.........
T Consensus 184 ~~~~~~~~~~~-~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~-G~~~~~----~~~~~~~~~~~~~ 255 (374)
T cd03801 184 PAPRAARRRLG-IPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIV-GDGPLR----EELEALAAELGLG 255 (374)
T ss_pred ccchHHHhhcC-CcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEE-eCcHHH----HHHHHHHHHhCCC
Confidence 00011111111 1123467777887653 222333444442 22 2333333 311000 0000101111235
Q ss_pred CcEEeccccCch---hhhcccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
.++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ...+..++ .-+.|..++.
T Consensus 256 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~-~~~~g~~~~~--- 325 (374)
T cd03801 256 DRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVE-DGETGLLVPP--- 325 (374)
T ss_pred cceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhc-CCcceEEeCC---
Confidence 688888899754 47788888 663 3456799999999999998765 45666666 6778888876
Q ss_pred CcccHHHHHHHHHHHhccC
Q 012080 407 GWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~ 425 (471)
.+.+++.++|.++++++
T Consensus 326 --~~~~~l~~~i~~~~~~~ 342 (374)
T cd03801 326 --GDPEALAEAILRLLDDP 342 (374)
T ss_pred --CCHHHHHHHHHHHHcCh
Confidence 56899999999999886
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.19 E-value=8.9e-08 Score=93.72 Aligned_cols=315 Identities=14% Similarity=0.034 Sum_probs=162.9
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 012080 24 AVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMD 103 (471)
Q Consensus 24 ~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (471)
..|+...+..+++.|.+.||+|++++.............. ..... ............... .....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~~~~~~~----~~~~~ 77 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKG---RLVGV--------ERLPVLLPVVPLLKG----PLLYL 77 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccc---ccccc--------cccccCcchhhcccc----chhHH
Confidence 4789999999999999999999999987644322110000 00000 000000000000000 01112
Q ss_pred HhHHHHHHHHH--hCCCcEEEEc-Cc---cchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCC
Q 012080 104 RCRGQVEAVIK--AAKPRLLFYD-IA---YWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPA 177 (471)
Q Consensus 104 ~~~~~l~~~l~--~~~~Dlvi~D-~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 177 (471)
.....+..+++ ..+||+|++. .. ..+..+++..++|++.........
T Consensus 78 ~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------------- 130 (377)
T cd03798 78 LAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN--------------------------- 130 (377)
T ss_pred HHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc---------------------------
Confidence 23445666776 8899999988 33 233446667788988654432111
Q ss_pred CCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH--cCCCeEEeccCCCCC
Q 012080 178 GYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ--YNKPVFLTGPVLHEP 255 (471)
Q Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~--~~~~v~~vGp~~~~~ 255 (471)
.... . . ......+ ......+.+++.+.. ..+.+... ...++..++......
T Consensus 131 ~~~~------------------~-~-~~~~~~~--~~~~~~d~ii~~s~~-----~~~~~~~~~~~~~~~~~i~~~~~~~ 183 (377)
T cd03798 131 LLPR------------------K-R-LLRALLR--RALRRADAVIAVSEA-----LADELKALGIDPEKVTVIPNGVDTE 183 (377)
T ss_pred ccCc------------------h-h-hHHHHHH--HHHhcCCeEEeCCHH-----HHHHHHHhcCCCCceEEcCCCcCcc
Confidence 0000 0 0 0111111 224556777765543 22333332 334566666443321
Q ss_pred CCCC-ChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEe-CCCCCCCcccccCChhHHHhhC
Q 012080 256 AKTP-SEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIAL-KPPTGASTVEEAFPDGFAERTK 332 (471)
Q Consensus 256 ~~~~-~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~ 332 (471)
.-.. ..... ..+.. .....+++..|+... ...+.+...+..+...+..+.+.+ +.+..... +-+...+...
T Consensus 184 ~~~~~~~~~~-~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~----~~~~~~~~~~ 257 (377)
T cd03798 184 RFSPADRAEA-RKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREA----LEALAAELGL 257 (377)
T ss_pred cCCCcchHHH-HhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHH----HHHHHHhcCC
Confidence 1001 11110 11111 123467777887654 222333333333333222333333 22111100 1111111112
Q ss_pred CCcEEeccccCch---hhhcccCcceee----ccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFV----SHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~I----tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
.+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+-+. ......+. ..+.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~-~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIIT-DGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhc-CCcceeEECC--
Confidence 4688888999875 46778888 55 22455789999999999998654 34455666 7777877776
Q ss_pred CCcccHHHHHHHHHHHhccC
Q 012080 406 NGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~ 425 (471)
-+.+++.++|.++++++
T Consensus 329 ---~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 329 ---GDPEALAEAILRLLADP 345 (377)
T ss_pred ---CCHHHHHHHHHHHhcCc
Confidence 68889999999999986
No 57
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.15 E-value=1.1e-07 Score=93.59 Aligned_cols=112 Identities=10% Similarity=-0.038 Sum_probs=72.1
Q ss_pred CcEEeccccC-ch---hhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 334 RGVVCGEWVE-QM---PILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 334 ~nv~~~~~~p-q~---~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
.++...+|++ +. .+++.+++ +|.- |..++++||+++|+|+|+... ......+. .-+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~-~~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVD-HGVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhhee-CCCceEEeCC--
Confidence 4677788988 43 46888888 7764 335799999999999998653 23333454 5457777775
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
.+.+++.++|.++++++ +..+.+.+++++. ....-..++.++.+++..+
T Consensus 315 ---~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 ---GDPEDLAEGIEWLLADP-DEREELGEAAREL---AENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred ---CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHh
Confidence 57889999999999875 2233344444433 3222333444555555443
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.13 E-value=6.5e-08 Score=93.77 Aligned_cols=321 Identities=17% Similarity=0.123 Sum_probs=163.4
Q ss_pred eEEEe-cC-C-CccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVML-PW-F-AVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~-~~-~-~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
||+++ +. . ..|...-+..++++|.++||+|++++........ .....++.+..++.. ...
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~--------- 63 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF---YELDPKIKVIDLGDK-----RDS--------- 63 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc---cccCCccceeecccc-----ccc---------
Confidence 35555 22 3 3456667888999999999999999887654100 011122444433311 000
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCC-ceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSI-KCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~gi-P~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
.. .........+..+++..+||+|++. ........+...+. |.+.........
T Consensus 64 ~~-----~~~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------- 118 (348)
T cd03820 64 KL-----LARFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDA-------------------- 118 (348)
T ss_pred ch-----hccccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccc--------------------
Confidence 00 0011123456667777899999999 44333334444554 665432211100
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEecc
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGP 250 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp 250 (471)
... ....... ........+.+++.+.... .......+.++..+++
T Consensus 119 --------~~~--------------------~~~~~~~--~~~~~~~~d~ii~~s~~~~-----~~~~~~~~~~~~vi~~ 163 (348)
T cd03820 119 --------YKK--------------------RLRRLLL--RRLLYRRADAVVVLTEEDR-----ALYYKKFNKNVVVIPN 163 (348)
T ss_pred --------hhh--------------------hhHHHHH--HHHHHhcCCEEEEeCHHHH-----HHhhccCCCCeEEecC
Confidence 000 0000000 1123456777777665432 1122223455666664
Q ss_pred CCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhc--CCceEEEeCCCCCCCcccccCChhH
Q 012080 251 VLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELT--GLCFLIALKPPTGASTVEEAFPDGF 327 (471)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~p~~~ 327 (471)
......... . . .....+++.+|.... ...+.+.+.+..+... +.++++. +.+..... +....
T Consensus 164 ~~~~~~~~~-------~-~--~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~-G~~~~~~~----~~~~~ 228 (348)
T cd03820 164 PLPFPPEEP-------S-S--DLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIV-GDGPEREA----LEALI 228 (348)
T ss_pred CcChhhccc-------c-C--CCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEE-eCCCCHHH----HHHHH
Confidence 433211000 0 1 123356667777654 2334444444444322 3344443 32211100 11111
Q ss_pred HHhhCCCcEEeccccCc-hhhhcccCcceeeccC----CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhc-ceEEe
Q 012080 328 AERTKGRGVVCGEWVEQ-MPILEHSSVGCFVSHC----GFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELK-VAVEV 401 (471)
Q Consensus 328 ~~~~~~~nv~~~~~~pq-~~lL~~~~v~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l 401 (471)
.+.....++.+.++... ..++..+++ +|.-. ..++++||+++|+|+|+.+..+.+ ..+. .-| .|..+
T Consensus 229 ~~~~~~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~-~~~~~g~~~ 301 (348)
T cd03820 229 KELGLEDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEII-EDGVNGLLV 301 (348)
T ss_pred HHcCCCCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhh-ccCcceEEe
Confidence 11112356777766333 468888888 66543 247899999999999987644332 2344 444 78877
Q ss_pred ecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 402 EREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
+. -+.+++.++|.++++|+ +..+.+.+++++..+
T Consensus 302 ~~-----~~~~~~~~~i~~ll~~~-~~~~~~~~~~~~~~~ 335 (348)
T cd03820 302 PN-----GDVEALAEALLRLMEDE-ELRKRMGANARESAE 335 (348)
T ss_pred CC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHH
Confidence 75 56789999999999986 444445555544433
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.13 E-value=3.4e-07 Score=91.78 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=70.5
Q ss_pred CCcEEeccccCch---hhhcccCcceeec---cCC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVS---HCG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~It---HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
.+++.+.+++|.. ++|+.+++ +|. +-| ..+++||+++|+|+|+... ......++ +-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~-~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVA-DGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhc-cCCceEECCC--
Confidence 3578999999864 57888988 663 233 3689999999999998654 33455666 6677888875
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
-+.+++.++|.++++++ +..+.+.+++++..+
T Consensus 353 ---~d~~~la~~i~~~l~~~-~~~~~~~~~~~~~~~ 384 (405)
T TIGR03449 353 ---HDPADWADALARLLDDP-RTRIRMGAAAVEHAA 384 (405)
T ss_pred ---CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH
Confidence 57889999999999874 455566666665543
No 60
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.11 E-value=4.8e-08 Score=98.60 Aligned_cols=88 Identities=11% Similarity=0.037 Sum_probs=64.4
Q ss_pred hhhhcccCcceeec-----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHH
Q 012080 345 MPILEHSSVGCFVS-----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 345 ~~lL~~~~v~~~It-----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~ 419 (471)
..+++.+++ ++. -+|..+++||+++|+|+|+-|...++......+. +.|+++. . -+.++|.++|.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~-~~g~~~~--~-----~d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLL-QAGAAIQ--V-----EDAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHH-HCCCeEE--E-----CCHHHHHHHHH
Confidence 457788887 433 1344469999999999999999888888888777 6665544 3 36788999999
Q ss_pred HHhccCchhhHHHHHHHHHHHhhh
Q 012080 420 CVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 420 ~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
++++|+ +..+.+.++|++..+..
T Consensus 384 ~ll~~~-~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 384 YLLTDP-DARQAYGEAGVAFLKQN 406 (425)
T ss_pred HHhcCH-HHHHHHHHHHHHHHHhC
Confidence 999885 55556666666655443
No 61
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.10 E-value=2.6e-08 Score=98.43 Aligned_cols=341 Identities=11% Similarity=0.051 Sum_probs=171.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhhccCC-CCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQLQHFN-LHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
||++++ +++.|..-+.++.++|.++ +.++.++.+..........- .+ ++.. .+. +.-+ . . ...
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~--~i~~-~~~------~~~~-~--~--~~~ 66 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLF--HLPP-DYD------LNIM-S--P--GQT 66 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhc--CCCC-Cee------eecC-C--C--CCC
Confidence 677665 6789999999999999987 56666666655443332211 00 0210 010 0000 0 0 011
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
. ..........+.+++++.+||+|++- . ..++..+|..+|||++.+....-..
T Consensus 67 ~----~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~------------------- 123 (365)
T TIGR00236 67 L----GEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTG------------------- 123 (365)
T ss_pred H----HHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcC-------------------
Confidence 1 11122344678889999999998885 3 4667888999999998553211000
Q ss_pred cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-Hc-CCCeEE
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR-QY-NKPVFL 247 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~~~v~~ 247 (471)
.....+|. ...|... ...++.+++.+-. ..+.+.. .. +.++++
T Consensus 124 ----~~~~~~~~-------------------------~~~r~~~-~~~ad~~~~~s~~-----~~~~l~~~G~~~~~I~v 168 (365)
T TIGR00236 124 ----DRYSPMPE-------------------------EINRQLT-GHIADLHFAPTEQ-----AKDNLLRENVKADSIFV 168 (365)
T ss_pred ----CCCCCCcc-------------------------HHHHHHH-HHHHHhccCCCHH-----HHHHHHHcCCCcccEEE
Confidence 00000110 0001000 0012333332221 1111111 12 224677
Q ss_pred eccCC-CC---CCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-----CCceEEEeCCCCCCCc
Q 012080 248 TGPVL-HE---PAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT-----GLCFLIALKPPTGAST 318 (471)
Q Consensus 248 vGp~~-~~---~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~~~~~~~~~~~~~ 318 (471)
+|... .. ........++.+.+.. ++..|+++++-.... ...+..+++++... +.++++...+...
T Consensus 169 ign~~~d~~~~~~~~~~~~~~~~~~~~--~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~--- 242 (365)
T TIGR00236 169 TGNTVIDALLTNVEIAYSSPVLSEFGE--DKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPV--- 242 (365)
T ss_pred eCChHHHHHHHHHhhccchhHHHhcCC--CCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChH---
Confidence 77332 11 0000111122222221 234666655432111 13456666666442 4556665332111
Q ss_pred ccccCChhHHHhh-CCCcEEeccccCch---hhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 012080 319 VEEAFPDGFAERT-KGRGVVCGEWVEQM---PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE 394 (471)
Q Consensus 319 ~~~~~p~~~~~~~-~~~nv~~~~~~pq~---~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~ 394 (471)
.-..+.... ..+++++.+.+++. .++.++++ +|+-.|. .+.||+++|+|+|+++-.++++. +. .
T Consensus 243 ----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~-~ 310 (365)
T TIGR00236 243 ----VREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TV-E 310 (365)
T ss_pred ----HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HH-h
Confidence 001122222 23577877666653 56778887 9987764 47999999999999976665552 44 4
Q ss_pred hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 395 LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 395 ~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
.|.+..+. -++++|.++|.++++|+ ..+++...-. ...+ ...+.+.+++.+.+
T Consensus 311 ~g~~~lv~------~d~~~i~~ai~~ll~~~-----~~~~~~~~~~---~~~g-~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 311 AGTNKLVG------TDKENITKAAKRLLTDP-----DEYKKMSNAS---NPYG-DGEASERIVEELLN 363 (365)
T ss_pred cCceEEeC------CCHHHHHHHHHHHHhCh-----HHHHHhhhcC---CCCc-CchHHHHHHHHHHh
Confidence 56666554 47889999999999886 5554433222 2222 13344555555543
No 62
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.06 E-value=1.9e-07 Score=93.11 Aligned_cols=93 Identities=8% Similarity=0.001 Sum_probs=66.4
Q ss_pred CCcEEeccccCch---hhhcccCcceeecc---CC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVSH---CG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
.++|.+.+++|.. .+|..+++ ++.. -| ..+++||+++|+|+|+.-. ......+. .-+.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~-~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVV-DGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhc-cCCceEEeC---
Confidence 4689999999875 46788888 6532 22 3578999999999999743 33445566 556777765
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
.+.+++.++|.++++++ +..+.+.++|++.
T Consensus 349 ---~~~~~~a~~i~~l~~~~-~~~~~~~~~a~~~ 378 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDP-DLADRMGAAGRKR 378 (392)
T ss_pred ---CCHHHHHHHHHHHHhCh-HHHHHHHHHHHHH
Confidence 36889999999999885 4455566666553
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.05 E-value=4.2e-07 Score=89.10 Aligned_cols=319 Identities=13% Similarity=0.043 Sum_probs=168.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCchh-hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 012080 25 VGHMTPFLHLSNKLAEKGHKITILLPRKAQT-QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMD 103 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (471)
.|--.-+..+|++|+++||+|++++...... ..+..+ ++++.++.. .. .....+
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~-----~~~~~~~~~------~~---------~~~~~~----- 64 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEAEG-----SRHIKLPFI------SK---------NPLRIL----- 64 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhcC-----CeEEEcccc------cc---------chhhhH-----
Confidence 5666778999999999999999998754321 222223 556555421 00 000111
Q ss_pred HhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCCCCC
Q 012080 104 RCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPAGYP 180 (471)
Q Consensus 104 ~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p 180 (471)
.....+...+++.+||+|++. . ...+..+++..++|++..........
T Consensus 65 ~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~----------------------------- 115 (355)
T cd03819 65 LNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVN----------------------------- 115 (355)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhH-----------------------------
Confidence 112346667788899999998 3 33444566778899886543211000
Q ss_pred CCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC---CCeEEeccCCCCCC-
Q 012080 181 SDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN---KPVFLTGPVLHEPA- 256 (471)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~v~~vGp~~~~~~- 256 (471)
.++.. .+...+.+++.+-.. .+.+...++ .++..++.-.....
T Consensus 116 -------------------------~~~~~---~~~~~~~vi~~s~~~-----~~~~~~~~~~~~~k~~~i~ngi~~~~~ 162 (355)
T cd03819 116 -------------------------FRYNA---IMARGDRVIAVSNFI-----ADHIRENYGVDPDRIRVIPRGVDLDRF 162 (355)
T ss_pred -------------------------HHHHH---HHHhcCEEEEeCHHH-----HHHHHHhcCCChhhEEEecCCcccccc
Confidence 01111 123455555544321 122222221 24555543221110
Q ss_pred --CCCChhhh---hhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhc--CCceEEEeCCCCCCCcccccCChhHH
Q 012080 257 --KTPSEERW---DKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELT--GLCFLIALKPPTGASTVEEAFPDGFA 328 (471)
Q Consensus 257 --~~~~~~~l---~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~ 328 (471)
....+.+. .+-+.. ++...+++..|.+.. ...+.+.+.+..+... +.+++++ |.+...+.....+-+ ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~iv-G~~~~~~~~~~~~~~-~~ 239 (355)
T cd03819 163 DPGAVPPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIV-GDAQGRRFYYAELLE-LI 239 (355)
T ss_pred CccccchHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEE-ECCcccchHHHHHHH-HH
Confidence 00111111 111111 223466777777654 2344455555555443 3333333 322211111000000 11
Q ss_pred HhhC-CCcEEeccccCc-hhhhcccCcceeec--cCC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 329 ERTK-GRGVVCGEWVEQ-MPILEHSSVGCFVS--HCG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 329 ~~~~-~~nv~~~~~~pq-~~lL~~~~v~~~It--HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
...+ .+++.+.+|.+. ..++..+++-++-+ +-| .++++||+++|+|+|+... ..+...+. .-+.|..++.
T Consensus 240 ~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~-~~~~g~~~~~ 314 (355)
T cd03819 240 KRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVR-PGETGLLVPP 314 (355)
T ss_pred HHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHh-CCCceEEeCC
Confidence 1112 357888888543 46888899833333 223 3699999999999998653 33455566 6668888876
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhh
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
-+.+++.++|.+++..+.++.+.+.++|++..+..
T Consensus 315 -----~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~ 349 (355)
T cd03819 315 -----GDAEALAQALDQILSLLPEGRAKMFAKARMCVETL 349 (355)
T ss_pred -----CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh
Confidence 58889999997776543566777777777776543
No 64
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.05 E-value=2.1e-07 Score=89.19 Aligned_cols=299 Identities=17% Similarity=0.139 Sum_probs=159.9
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch--hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
|+|++- ..| .|+.-+..+.++|.++||+|.+.+-+... +.++.+| +.+..+.-. +
T Consensus 1 MkIwiDi~~p--~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg-----~~y~~iG~~---g------------ 58 (335)
T PF04007_consen 1 MKIWIDITHP--AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYG-----IDYIVIGKH---G------------ 58 (335)
T ss_pred CeEEEECCCc--hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcC-----CCeEEEcCC---C------------
Confidence 366663 333 39999999999999999999998877543 3445556 888877510 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccc
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAE 171 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 171 (471)
......+.. .-.....+.+++++.+||++|+-.++.+..+|..+|+|+|.+.=.......
T Consensus 59 ~~~~~Kl~~-~~~R~~~l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~e~a~~~------------------- 118 (335)
T PF04007_consen 59 DSLYGKLLE-SIERQYKLLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDTEHAIAQ------------------- 118 (335)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecCchhhcc-------------------
Confidence 111122222 122455677778888999999877788888999999999988644321100
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEE-EcCccccchhHHHHHHHHcCCCeEEecc
Q 012080 172 LAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAIS-IRTCHEIEGDLCEYIARQYNKPVFLTGP 250 (471)
Q Consensus 172 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~v~~vGp 250 (471)
+...+|-... +.........++.+.. .. ..+. .+.+.|+- ++-|
T Consensus 119 ---~~Lt~Pla~~------------i~~P~~~~~~~~~~~G---~~-~~i~~y~G~~E~a----------------yl~~ 163 (335)
T PF04007_consen 119 ---NRLTLPLADV------------IITPEAIPKEFLKRFG---AK-NQIRTYNGYKELA----------------YLHP 163 (335)
T ss_pred ---ceeehhcCCe------------eECCcccCHHHHHhcC---Cc-CCEEEECCeeeEE----------------eecC
Confidence 0011111000 0000000011111111 00 1122 33332211 1112
Q ss_pred CCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc----CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChh
Q 012080 251 VLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII----LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDG 326 (471)
Q Consensus 251 ~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~ 326 (471)
+ ..+++..+-+... +++.|++=+.+... .....+.+++..|+..+..++..-+...+.+ +-+.
T Consensus 164 F-------~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~-----~~~~ 230 (335)
T PF04007_consen 164 F-------KPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRE-----LFEK 230 (335)
T ss_pred C-------CCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhh-----HHhc
Confidence 1 1112222233211 24466665554322 2334566788888888776554433211100 1111
Q ss_pred HHHhhCCCcEE-eccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 327 FAERTKGRGVV-CGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 327 ~~~~~~~~nv~-~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
-++. ...-++-.+||.++++ +|+=|| -...||...|+|.|.+ +-++-...-+.+. +.|. ....
T Consensus 231 -------~~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~-~~Gl--l~~~-- 294 (335)
T PF04007_consen 231 -------YGVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLI-EKGL--LYHS-- 294 (335)
T ss_pred -------cCccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHH-HCCC--eEec--
Confidence 1222 2334555689999999 999877 6788999999999985 1223223334566 6654 4443
Q ss_pred CCcccHHHHHHHHHHHh
Q 012080 406 NGWFSKESLCKAIKCVM 422 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll 422 (471)
-+.+++.+.|.+.+
T Consensus 295 ---~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 ---TDPDEIVEYVRKNL 308 (335)
T ss_pred ---CCHHHHHHHHHHhh
Confidence 46666666555444
No 65
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=3.8e-08 Score=88.59 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=106.5
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccC-chhhhccc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVE-QMPILEHS 351 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~p-q~~lL~~~ 351 (471)
..-|+|++|..- +....-+++..+.+.++.+-++++... + -+.+...+. ..+|+.+..... -..|.+.+
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~------p-~l~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN------P-TLKNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC------c-chhHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 346999999762 334566777777777777777776321 1 223333333 245666543333 23588899
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHH
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNV 431 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~ 431 (471)
++ .|+-||. |+.|++..|+|.+++|+...|--.|...+ .+|+-..+... ++++.+...+.++..|+ .
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~-~lg~~~~l~~~----l~~~~~~~~~~~i~~d~-----~ 295 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFE-ALGIIKQLGYH----LKDLAKDYEILQIQKDY-----A 295 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHH-hcCchhhccCC----CchHHHHHHHHHhhhCH-----H
Confidence 98 8998776 99999999999999999999999999999 99888777642 67777777888899887 6
Q ss_pred HHHHHHHHHhhhcC
Q 012080 432 VRRNHAKWKGTLVS 445 (471)
Q Consensus 432 ~~~~a~~l~~~~~~ 445 (471)
.+++.-.-++..-+
T Consensus 296 ~rk~l~~~~~~i~d 309 (318)
T COG3980 296 RRKNLSFGSKLIGD 309 (318)
T ss_pred Hhhhhhhccceeec
Confidence 66666555554433
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=3.4e-07 Score=89.75 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=91.9
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhcC-CceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCch---hhhcc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELTG-LCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQM---PILEH 350 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~ 350 (471)
..+++..|.... ......++++++... .++++.-. +.. .+.+-+-..+....+||.+.+|+|+. .+++.
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~-g~~----~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ 263 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGE-GPL----EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA 263 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeC-Chh----HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh
Confidence 366777887643 233455666665555 44444432 110 00011111111235689999999975 47778
Q ss_pred cCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHh-hcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 351 SSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEE-LKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 351 ~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+++-++-+ +.|. .+++||+++|+|+|+....+.. ..+. . -+.|..++. -+.+++.++|.++++|+
T Consensus 264 ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~-~~~~~g~~~~~-----~d~~~~~~~i~~l~~~~ 333 (357)
T cd03795 264 CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVN-LHGVTGLVVPP-----GDPAALAEAIRRLLEDP 333 (357)
T ss_pred CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHh-hCCCceEEeCC-----CCHHHHHHHHHHHHHCH
Confidence 88843334 2344 4799999999999996544433 3344 3 567777775 57889999999999985
Q ss_pred chhhHHHHHHHHHHHhh
Q 012080 426 SEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 426 ~~~~~~~~~~a~~l~~~ 442 (471)
++.+.+.+++++..+.
T Consensus 334 -~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 334 -ELRERLGEAARERAEE 349 (357)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 5555666666665443
No 67
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.05 E-value=9.6e-07 Score=88.80 Aligned_cols=117 Identities=19% Similarity=0.192 Sum_probs=77.1
Q ss_pred CcEEeccccCch---hhhcccCcceeeccCCc------chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecc
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVSHCGF------GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~ItHgG~------~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
+|+.+.+|+|+. ++++.+++-++.+.-+. +.+.|++++|+|+|+...-+.. . ..+. . +.|..++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~-~~~i-~-~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--L-GQLV-E-GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--H-HHHH-h-CCcEEeCC-
Confidence 478888999865 47888898555555332 2468999999999998743311 1 1234 3 78888876
Q ss_pred cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcc
Q 012080 405 ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLV 464 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 464 (471)
-+.+++.++|.++++|+ +..+.+.+++++..+.-. .....++++++.+.++.
T Consensus 358 ----~d~~~la~~i~~l~~~~-~~~~~~~~~a~~~~~~~f---s~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 358 ----ESVEALVAAIAALARQA-LLRPKLGTVAREYAERTL---DKENVLRQFIADIRGLV 409 (412)
T ss_pred ----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHh
Confidence 57889999999999875 455566666665443222 23345566665555544
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.01 E-value=4.6e-08 Score=96.54 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=82.5
Q ss_pred CcEEEEEeCccccC-CHHHHHHHHHHHHhcCC-ceEEEeCCC-CCCCcccccCChhHHHhhC--CCcEEeccccCch---
Q 012080 274 SSVVYCAFGSQIIL-EKKQFQELLLGLELTGL-CFLIALKPP-TGASTVEEAFPDGFAERTK--GRGVVCGEWVEQM--- 345 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~~~~~~~~-~~~~~~~~~~p~~~~~~~~--~~nv~~~~~~pq~--- 345 (471)
++.|++++|..... ....+..++++++.... ++.+.+..+ ...+. +-+ ...... .+++.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~----l~~-~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPR----IRE-AGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHH----HHH-HHHhhccCCCCEEEECCcCHHHHH
Confidence 45788888876543 34567778887765432 244443211 11011 111 111111 3577776555443
Q ss_pred hhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
.++..+++ ||+..| |.+.|++++|+|+|+++.. |. +..+. +.|+++.+. -+.++|.++|.++++++
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~------~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG------TDPEAILAAIEKLLSDE 338 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC------CCHHHHHHHHHHHhcCc
Confidence 46777888 999999 7888999999999998743 22 33455 556665444 25788999999999876
No 69
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.00 E-value=1.6e-06 Score=85.00 Aligned_cols=95 Identities=12% Similarity=0.137 Sum_probs=65.7
Q ss_pred CCcEEecc-ccCch---hhhcccCcceee--cc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee
Q 012080 333 GRGVVCGE-WVEQM---PILEHSSVGCFV--SH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 333 ~~nv~~~~-~~pq~---~lL~~~~v~~~I--tH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
..++.+.+ |+|+. .+++.+++ +| +. |..++++||+++|+|+|+.+..+ ...+. .-+.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~-~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVL-DGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheee-eCCCcEEEc
Confidence 45676654 58864 57778888 55 22 33468999999999999977543 33455 667787777
Q ss_pred cccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 403 REENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
. -+.+++.++|.++++++ +..+++.+++++..+
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~ 350 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADP-ELAQALRARAREYAR 350 (366)
T ss_pred C-----CCHHHHHHHHHHHHcCh-HHHHHHHHHHHHHHh
Confidence 5 46889999999999884 344455555555444
No 70
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.98 E-value=6.7e-07 Score=86.69 Aligned_cols=313 Identities=13% Similarity=0.059 Sum_probs=157.3
Q ss_pred eEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 16 PIVMLPW--FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 16 ~il~~~~--~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
||++++. +..|+...+..+++.|.+.||+|++++............. ........ .. ... ...
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~---~~~~~~~~--------~~-~~~---~~~ 65 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPS---NVKLIPVR--------VL-KLK---SLR 65 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccccccc---chhhhcee--------ee-ecc---ccc
Confidence 4666633 3678889999999999999999999998765432211100 00000000 00 000 000
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccch-HHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWM-ATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~-~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
.......+.+.+++.+||+|++. . ...- ..++...++|.+..........
T Consensus 66 --------~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------- 118 (353)
T cd03811 66 --------DLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLE------------------- 118 (353)
T ss_pred --------chhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhh-------------------
Confidence 11123456677777899999999 4 2211 1222333688886654332110
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC---CCeEE
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN---KPVFL 247 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~v~~ 247 (471)
... . . .... .........+.+++.+-.. .+.+...++ .++..
T Consensus 119 --------~~~------------------~-~-~~~~--~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~~v 163 (353)
T cd03811 119 --------LKR------------------K-L-RLLL--LIRKLYRRADKIVAVSEGV-----KEDLLKLLGIPPDKIEV 163 (353)
T ss_pred --------hcc------------------c-h-hHHH--HHHhhccccceEEEeccch-----hhhHHHhhcCCccccEE
Confidence 000 0 0 0000 1112245566666655432 222222222 35566
Q ss_pred eccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhc--CCceEEEeCCCCCCCcccccCC
Q 012080 248 TGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELT--GLCFLIALKPPTGASTVEEAFP 324 (471)
Q Consensus 248 vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~p 324 (471)
+.+.............-..+. ...+..+++..|+... ...+.+.+.+..+... +.+++++ +.+...+. +
T Consensus 164 i~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~~~~~~----~- 235 (353)
T cd03811 164 IYNPIDIEEIRALAEEPLELG--IPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDGPLREE----L- 235 (353)
T ss_pred ecCCcChhhcCcccchhhhcC--CCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCCccHHH----H-
Confidence 654332211000000000011 1223477777888753 1223333333333222 3444443 32211111 0
Q ss_pred hhHHHhh-CCCcEEeccccCc-hhhhcccCcceeec--c--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcce
Q 012080 325 DGFAERT-KGRGVVCGEWVEQ-MPILEHSSVGCFVS--H--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVA 398 (471)
Q Consensus 325 ~~~~~~~-~~~nv~~~~~~pq-~~lL~~~~v~~~It--H--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 398 (471)
....... ..+++.+.+|.+. .+++..+++ +|. + |..+++.||+++|+|+|+.... .....+. .-+.|
T Consensus 236 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~-~~~~g 308 (353)
T cd03811 236 EALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILE-DGENG 308 (353)
T ss_pred HHHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhc-CCCce
Confidence 0111122 2457788888765 468888888 553 2 3347899999999999986433 5666777 77889
Q ss_pred EEeecccCCcccHHHH---HHHHHHHhccC
Q 012080 399 VEVEREENGWFSKESL---CKAIKCVMDKE 425 (471)
Q Consensus 399 ~~l~~~~~~~~t~~~l---~~ai~~ll~~~ 425 (471)
..++. -+.+.+ .+++.+++.++
T Consensus 309 ~~~~~-----~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 309 LLVPV-----GDEAALAAAALALLDLLLDP 333 (353)
T ss_pred EEECC-----CCHHHHHHHHHHHHhccCCh
Confidence 88876 456666 56666677664
No 71
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.97 E-value=8.2e-07 Score=86.96 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCcEEeccccCch---hhhcccCcceeec----------cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceE
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVS----------HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAV 399 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~It----------HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 399 (471)
.+|+.+.+++|+. .++..+++ +|. -|..++++||+++|+|+|+.+.. + ....++ .-..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~-~---~~~~i~-~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS-G---IPELVE-DGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC-C---cchhhh-CCCceE
Confidence 4688999999864 46677888 555 23347999999999999987642 2 333455 555788
Q ss_pred EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
.++. -+.+++.++|.++++++ +..+.+.++|++.
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~-~~~~~~~~~a~~~ 341 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDP-ELRREMGEAGRAR 341 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 7775 47899999999999885 3444555555543
No 72
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.97 E-value=1.4e-06 Score=85.43 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=66.2
Q ss_pred CCcEEeccccCchh---hhcccCcceeecc-CC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVSH-CG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~ItH-gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
.+++.+.+|+++.+ ++..+++-++-++ .| .+++.||+++|+|+|+.+ .......+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~----~~~~~~~~~-~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD----KVPWQELIE-Y-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC----CCCHHHHhh-c-CceEEeCC----
Confidence 46888999999644 5788888222232 22 468999999999999965 334555566 5 77877763
Q ss_pred cccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 408 WFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
+.+++.++|.++++++ +..+.+.+++++.
T Consensus 331 --~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~ 359 (375)
T cd03821 331 --DVDALAAALRRALELP-QRLKAMGENGRAL 359 (375)
T ss_pred --ChHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 4589999999999985 4444555555554
No 73
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.93 E-value=1.8e-06 Score=84.20 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=57.4
Q ss_pred CcEEeccccCc-hhhhcccCcceeeccCC----cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCc
Q 012080 334 RGVVCGEWVEQ-MPILEHSSVGCFVSHCG----FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGW 408 (471)
Q Consensus 334 ~nv~~~~~~pq-~~lL~~~~v~~~ItHgG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 408 (471)
.++.+.++... ..+++.+++ +|.... .+++.||+++|+|+|+. |...+...+. + .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~~-~--~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELVG-D--TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHhh-c--CCEEeCC-----
Confidence 45666554443 468888888 775433 37999999999999985 4445666666 5 6766765
Q ss_pred ccHHHHHHHHHHHhccC
Q 012080 409 FSKESLCKAIKCVMDKE 425 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~~ 425 (471)
-+.+++.++|.++++++
T Consensus 317 ~~~~~l~~~i~~l~~~~ 333 (365)
T cd03807 317 GDPEALAEAIEALLADP 333 (365)
T ss_pred CCHHHHHHHHHHHHhCh
Confidence 47889999999999885
No 74
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.90 E-value=3.2e-06 Score=85.72 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=65.1
Q ss_pred CCcEEeccccCchhh---hccc----CcceeeccC---C-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEe
Q 012080 333 GRGVVCGEWVEQMPI---LEHS----SVGCFVSHC---G-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEV 401 (471)
Q Consensus 333 ~~nv~~~~~~pq~~l---L~~~----~v~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 401 (471)
..+|.+.+++++.++ ++.+ ++ ||... | ..+++||+++|+|+|+... ......+. .-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~-~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIA-NCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhc-CCCcEEEe
Confidence 346777778876654 5544 55 77543 3 3699999999999998764 33555555 55678888
Q ss_pred ecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 402 EREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
+. -+++++.++|.++++|+ +..+.+.+++++
T Consensus 389 ~~-----~d~~~la~~i~~ll~~~-~~~~~~~~~a~~ 419 (439)
T TIGR02472 389 DV-----LDLEAIASALEDALSDS-SQWQLWSRNGIE 419 (439)
T ss_pred CC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHH
Confidence 76 57889999999999885 344445555544
No 75
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.87 E-value=3.2e-06 Score=84.56 Aligned_cols=132 Identities=11% Similarity=0.106 Sum_probs=75.0
Q ss_pred CcEEEEEeCcccc-CCHHHHHHHHHHHHh--cCCceEEEeCCCCCCCcccccCChhHHHhhC-CCcEEeccccCch---h
Q 012080 274 SSVVYCAFGSQII-LEKKQFQELLLGLEL--TGLCFLIALKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQM---P 346 (471)
Q Consensus 274 ~~vV~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~---~ 346 (471)
...+++..|.... ...+.+.+.+..+.+ .+.+++++ +.+...+. + ....++.+ .+++.+.+|+|+. .
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~----l-~~~~~~~~l~~~v~~~G~~~~~~~~~ 265 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGPKRIL----L-EEMREKYNLQDRVELLGAVPHERVRD 265 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCchHHH----H-HHHHHHhCCCCeEEEeCCCCHHHHHH
Confidence 4477777887754 233434333333322 23444443 32211100 1 11222222 3568888999864 4
Q ss_pred hhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 347 ILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 347 lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+. + |.+.... .+.+++.++|.+++
T Consensus 266 ~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~------~~~~~l~~~l~~~l 331 (398)
T cd03796 266 VLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAE------PDVESIVRKLEEAI 331 (398)
T ss_pred HHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecC------CCHHHHHHHHHHHH
Confidence 7778888 553 2344 49999999999999977532 233343 3 3332322 37789999999999
Q ss_pred ccC
Q 012080 423 DKE 425 (471)
Q Consensus 423 ~~~ 425 (471)
++.
T Consensus 332 ~~~ 334 (398)
T cd03796 332 SIL 334 (398)
T ss_pred hCh
Confidence 864
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.86 E-value=1.8e-06 Score=84.79 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCcEEeccccCc-hhhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
..++.+.++..+ .+++..+++ +|.- |..+++.||+++|+|+|+. |...+...++ . .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~-~--~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVG-D--SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEec-C--CceEeCC----
Confidence 357777777654 468888888 5542 2247899999999999974 4455666666 5 4555554
Q ss_pred cccHHHHHHHHHHHhccC
Q 012080 408 WFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~ 425 (471)
-+.+++.++|.++++++
T Consensus 311 -~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 -SDPEALANKIDEILKMS 327 (360)
T ss_pred -CCHHHHHHHHHHHHhCC
Confidence 57888999999999543
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.84 E-value=3.1e-06 Score=83.47 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCcEEeccccCchh---hhcccCcceeecc----------CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceE
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVSH----------CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAV 399 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~ItH----------gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 399 (471)
..++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+. .-+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~-~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVE-DGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhee-cCCeeE
Confidence 46788888998654 5788888 5531 2357999999999999987753 3666666 778888
Q ss_pred EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
.++. -+.+++.++|.++++|+ +..+.+.+++++.
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~-~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADP-DLRARMGAAGRRR 350 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHH
Confidence 8875 57789999999999875 3333444554443
No 78
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.79 E-value=6.2e-06 Score=89.04 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=66.9
Q ss_pred CcEEeccccCchh---hhcccC--cceeecc---CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecc
Q 012080 334 RGVVCGEWVEQMP---ILEHSS--VGCFVSH---CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 334 ~nv~~~~~~pq~~---lL~~~~--v~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
.+|.+.+++++.+ ++..++ ..+||.- =|+ .+++||+++|+|+|+-... .....++ .-..|..++.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~-~g~nGlLVdP- 621 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHR-VLDNGLLVDP- 621 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhc-cCCcEEEECC-
Confidence 4677788888754 555552 1227763 343 6999999999999998643 2334444 5556888886
Q ss_pred cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 405 ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
-+.+.|.++|.++++|+ +.++.|.+++.+..+
T Consensus 622 ----~D~eaLA~AL~~LL~Dp-elr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 ----HDQQAIADALLKLVADK-QLWAECRQNGLKNIH 653 (1050)
T ss_pred ----CCHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHH
Confidence 57889999999999885 455566666665543
No 79
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.77 E-value=5.6e-06 Score=82.03 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=63.8
Q ss_pred CcEEeccccCc-hhhhcccCcceee--cc--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCc
Q 012080 334 RGVVCGEWVEQ-MPILEHSSVGCFV--SH--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGW 408 (471)
Q Consensus 334 ~nv~~~~~~pq-~~lL~~~~v~~~I--tH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 408 (471)
.++.+.++..+ .++++.+++ +| ++ |-.++++||+++|+|+|+-.. ..+...++ +-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~-~~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQ-HGVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhc-CCCceEEeCC-----
Confidence 44556555443 468889998 66 33 335799999999999999664 33555565 5567877775
Q ss_pred ccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 409 FSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
-+.+++.++|.++++++ +..+.+.++|++.
T Consensus 323 ~d~~~la~~i~~l~~~~-~~~~~~~~~a~~~ 352 (374)
T TIGR03088 323 GDAVALARALQPYVSDP-AARRAHGAAGRAR 352 (374)
T ss_pred CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 57789999999999875 3333444454443
No 80
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.77 E-value=4.8e-06 Score=82.86 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=84.2
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhc--CCceEEEeCCCCCCCcccccCChhHHHh---hC--CCcEE-eccccCch--
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELT--GLCFLIALKPPTGASTVEEAFPDGFAER---TK--GRGVV-CGEWVEQM-- 345 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~--~~nv~-~~~~~pq~-- 345 (471)
++++..|.... ...+..++++++.. +.++++..+.+.. .. +-+.+... .. ..+++ +.+++++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~-~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDT-PE----VAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCc-HH----HHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 56666777653 23345555555443 4555554442211 11 11111111 11 12344 34577754
Q ss_pred -hhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC-CcccHHHHHHHHH
Q 012080 346 -PILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN-GWFSKESLCKAIK 419 (471)
Q Consensus 346 -~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~-~~~t~~~l~~ai~ 419 (471)
+++..+++ +|.= +...+++||+++|+|+|+... ......++ .-+.|..++.... ..-..+++.++|.
T Consensus 275 ~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~-~~~~G~~~~~~~~~~~~~~~~l~~~i~ 347 (388)
T TIGR02149 275 VELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVV-DGETGFLVPPDNSDADGFQAELAKAIN 347 (388)
T ss_pred HHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhh-CCCceEEcCCCCCcccchHHHHHHHHH
Confidence 46788888 6642 233578999999999998653 34556666 6677888876320 0011278999999
Q ss_pred HHhccCchhhHHHHHHHHHH
Q 012080 420 CVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 420 ~ll~~~~~~~~~~~~~a~~l 439 (471)
+++.|+ +..+.+.++|++.
T Consensus 348 ~l~~~~-~~~~~~~~~a~~~ 366 (388)
T TIGR02149 348 ILLADP-ELAKKMGIAGRKR 366 (388)
T ss_pred HHHhCH-HHHHHHHHHHHHH
Confidence 999885 4444555555543
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.75 E-value=7.3e-06 Score=80.40 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=57.8
Q ss_pred CCcEEeccccCc-hhhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
.+++.+.++..+ .+++..+++ +|.- |-.++++||+++|+|+|+....+ ....+. . +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC----
Confidence 356777777544 468888888 5532 44579999999999999865433 344555 5 55655543
Q ss_pred cccHHHHHHHHHHHhccC
Q 012080 408 WFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~ 425 (471)
-+++++.++|.++++|+
T Consensus 316 -~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 316 -ESPEIWAEEILKLKSED 332 (358)
T ss_pred -CCHHHHHHHHHHHHhCc
Confidence 45799999999999997
No 82
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.72 E-value=3.1e-06 Score=83.31 Aligned_cols=318 Identities=14% Similarity=0.105 Sum_probs=161.2
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
||+++. +++....=+.++.++|.+. +.++.++.+...... .+|..-..+....++.. ....- ....+....
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~--~~g~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~- 73 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSP--EYGNTVNEIEKDGFDID--EKIEI--LLDSDSNAG- 73 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCCh--hhccHHHHHHHcCCCCC--Ccccc--ccCCCCCCC-
Confidence 566654 6677888888888899874 788888877654321 11100000111101100 00000 000000011
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
...........+.+++++.+||+||+- . ..++..+|..++||++.+.-..-..
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~-------------------- 130 (365)
T TIGR03568 74 ---MAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTE-------------------- 130 (365)
T ss_pred ---HHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCC--------------------
Confidence 122234456688889999999998775 3 5678889999999999665432100
Q ss_pred ccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHH-HHHc-CCCeEEe
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYI-ARQY-NKPVFLT 248 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~-~~~v~~v 248 (471)
+.|.. ..++ ...+ .++..+..+- ...+.+ +... +.+++.+
T Consensus 131 -------~~~eE---~~r~-----------------~i~~------la~l~f~~t~-----~~~~~L~~eg~~~~~i~~t 172 (365)
T TIGR03568 131 -------GAIDE---SIRH-----------------AITK------LSHLHFVATE-----EYRQRVIQMGEDPDRVFNV 172 (365)
T ss_pred -------CCchH---HHHH-----------------HHHH------HHhhccCCCH-----HHHHHHHHcCCCCCcEEEE
Confidence 00100 0000 0000 0111111111 111111 1111 2356666
Q ss_pred ccCCCCC---CCCCChhhhhhccCCCCCCcEEEEEeCccc--c-CCHHHHHHHHHHHHhcCCceEEEeCCCC-CCCcccc
Q 012080 249 GPVLHEP---AKTPSEERWDKWLGGFERSSVVYCAFGSQI--I-LEKKQFQELLLGLELTGLCFLIALKPPT-GASTVEE 321 (471)
Q Consensus 249 Gp~~~~~---~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~ 321 (471)
|....+. .......++.+.+.-..+++.|++++=... . ...+.+..+++++...+.++++.+..+. ....
T Consensus 173 G~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~--- 249 (365)
T TIGR03568 173 GSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI--- 249 (365)
T ss_pred CCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH---
Confidence 7432210 000112233333321212458888885543 2 4567789999999777766666543211 1000
Q ss_pred cCChhHHHhhC-CCcEEeccccC---chhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 012080 322 AFPDGFAERTK-GRGVVCGEWVE---QMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV 397 (471)
Q Consensus 322 ~~p~~~~~~~~-~~nv~~~~~~p---q~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 397 (471)
+-+.+..... .+|+.+.+.++ ...+++++++ +|+..+.+- .||.+.|+|+|.+- +- .... +.|.
T Consensus 250 -i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R----~e~~-~~g~ 317 (365)
T TIGR03568 250 -INEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TR----QKGR-LRAD 317 (365)
T ss_pred -HHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CC----chhh-hhcC
Confidence 1111121122 45788776555 4567889998 999886555 99999999999774 21 1122 2233
Q ss_pred eEE-eecccCCcccHHHHHHHHHHHhc
Q 012080 398 AVE-VEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 398 G~~-l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
.+. +. .++++|.+++++++.
T Consensus 318 nvl~vg------~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 318 SVIDVD------PDKEEIVKAIEKLLD 338 (365)
T ss_pred eEEEeC------CCHHHHHHHHHHHhC
Confidence 322 43 578999999999653
No 83
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.71 E-value=4.2e-05 Score=75.10 Aligned_cols=137 Identities=12% Similarity=0.188 Sum_probs=75.2
Q ss_pred EEEeCccccCCHHHHHHHHHHHHhcC--CceEEEeCCCCCCCcccccCChhHHHh-hCCCcEEeccccCchh---hhccc
Q 012080 278 YCAFGSQIILEKKQFQELLLGLELTG--LCFLIALKPPTGASTVEEAFPDGFAER-TKGRGVVCGEWVEQMP---ILEHS 351 (471)
Q Consensus 278 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq~~---lL~~~ 351 (471)
++.+|++.. ...+..++++++... .++++ +|.+...+.. -+.+.+. ...++|.+.+++|+.+ ++..+
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~i-vG~~~~~~~~----~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVI-VGNADHNTPY----GKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEE-EcCCCCcchH----HHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 455787653 233445556665443 44443 3432221111 1112211 2246899999998864 56667
Q ss_pred CcceeeccC----Cc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCc
Q 012080 352 SVGCFVSHC----GF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKES 426 (471)
Q Consensus 352 ~v~~~ItHg----G~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~ 426 (471)
++ ++.+. |. ++++||+++|+|+|+....+ +...++ . .|..++. -+ . +.++|.++++++
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~-~--~g~~~~~-----~~-~-l~~~i~~l~~~~- 331 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLG-D--KAIYFKV-----GD-D-LASLLEELEADP- 331 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeec-C--CeeEecC-----ch-H-HHHHHHHHHhCH-
Confidence 77 54433 33 57999999999999875432 222233 3 3444442 11 1 999999999885
Q ss_pred hhhHHHHHHHHH
Q 012080 427 EVGNVVRRNHAK 438 (471)
Q Consensus 427 ~~~~~~~~~a~~ 438 (471)
+..+.+.+++++
T Consensus 332 ~~~~~~~~~~~~ 343 (363)
T cd04955 332 EEVSAMAKAARE 343 (363)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 84
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.68 E-value=1.6e-06 Score=83.83 Aligned_cols=100 Identities=16% Similarity=0.182 Sum_probs=72.9
Q ss_pred hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc--cccchhhHHHHHH--hhcceEEe-e--------c--ccCCcc
Q 012080 345 MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH--LGDQILNTRLLAE--ELKVAVEV-E--------R--EENGWF 409 (471)
Q Consensus 345 ~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~--~~DQ~~na~~v~~--~~G~G~~l-~--------~--~~~~~~ 409 (471)
.+++..+++ .|+-.|..|+ |+..+|+|||+ ++ ..=|+.||+++.+ ..|+.-.+ + + -+ +..
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ-~~~ 304 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQ-EFV 304 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhc-ccC
Confidence 578889998 9999999999 99999999998 43 4578899999871 23333223 1 0 11 458
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHH
Q 012080 410 SKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKF 456 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~ 456 (471)
|+++|.+++.+ .... .+++...++++.+.. +++.++++.+
T Consensus 305 t~~~la~~i~~-~~~~-----~~~~~~~~l~~~l~~-~a~~~~A~~i 344 (347)
T PRK14089 305 TVENLLKAYKE-MDRE-----KFFKKSKELREYLKH-GSAKNVAKIL 344 (347)
T ss_pred CHHHHHHHHHH-HHHH-----HHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 99999999988 3233 889999999998854 5555554443
No 85
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.67 E-value=1.2e-05 Score=78.15 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=76.9
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhh--CCCcEEeccccCch---hhhcc
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERT--KGRGVVCGEWVEQM---PILEH 350 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~---~lL~~ 350 (471)
.+.+..|.... ......++++++..+.++++.-. +...+. + ....... ..+++.+.+++++. .+++.
T Consensus 172 ~~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~-~~~~~~----~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 172 DYLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGP-VSDPDY----F-YREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred CEEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeC-CCCHHH----H-HHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 34455666632 23344566677777777665533 211110 0 1111111 24688999999875 46788
Q ss_pred cCcceeec--cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 351 SSVGCFVS--HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 351 ~~v~~~It--HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+++-++-+ +-|. .+++||+++|+|+|+... ..+...+. .-..|..++ . .+++.++|.+++..
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~-~~~~g~l~~------~-~~~l~~~l~~l~~~ 308 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVE-DGVTGFLVD------S-VEELAAAVARADRL 308 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhee-CCCcEEEeC------C-HHHHHHHHHHHhcc
Confidence 88833333 2343 589999999999998764 23334444 433676665 2 88899999998754
No 86
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.65 E-value=3.4e-06 Score=84.34 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=65.7
Q ss_pred CCCcEEeccccCch-hhhcccCcceee--cc--CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 332 KGRGVVCGEWVEQM-PILEHSSVGCFV--SH--CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 332 ~~~nv~~~~~~pq~-~lL~~~~v~~~I--tH--gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
..+||.+.+++++. .+++.+++ +| ++ .|. +.++||+++|+|+|+.+...+. ..+ .-|.|..+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~-~~~~g~lv~--- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDA-LPGAELLVA--- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc-----ccc-cCCcceEeC---
Confidence 35688888999863 58888998 65 33 354 4699999999999998853321 122 346676664
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
-+.+++.++|.++++|+ +..+.+.+++++.
T Consensus 347 ---~~~~~la~ai~~ll~~~-~~~~~~~~~ar~~ 376 (397)
T TIGR03087 347 ---ADPADFAAAILALLANP-AEREELGQAARRR 376 (397)
T ss_pred ---CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHH
Confidence 37899999999999885 4444555555544
No 87
>PLN02275 transferase, transferring glycosyl groups
Probab=98.65 E-value=5e-05 Score=75.20 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=53.4
Q ss_pred CcEEec-cccCchh---hhcccCcceeec----c--CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee
Q 012080 334 RGVVCG-EWVEQMP---ILEHSSVGCFVS----H--CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 334 ~nv~~~-~~~pq~~---lL~~~~v~~~It----H--gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
+|+++. .|+|+.+ +|+.+|+ +|. - -|. ++++||+++|+|+|+... ..+...++ +-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~-~g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVK-DGKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHcc-CCCCeEEEC
Confidence 556654 4788755 4888998 663 1 222 579999999999999753 33566666 767888775
Q ss_pred cccCCcccHHHHHHHHHHHh
Q 012080 403 REENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll 422 (471)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3678999998875
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.63 E-value=5.4e-06 Score=81.25 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=60.9
Q ss_pred CCCcEEeccccCch---hhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecc
Q 012080 332 KGRGVVCGEWVEQM---PILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 332 ~~~nv~~~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
...++.+.+|+|+. .++..+++ +|.- |..++++||+++|+|+|+.... .....+. + .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~-~--~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG-D--AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec-C--ceeeeCC-
Confidence 35688899999875 46778887 5432 3346899999999999986542 1122223 2 3555554
Q ss_pred cCCcccHHHHHHHHHHHhccCchhhHHHHHHHH
Q 012080 405 ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHA 437 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~ 437 (471)
-+.+++.++|.+++.|+ +..+.+.++++
T Consensus 321 ----~~~~~~~~~i~~l~~~~-~~~~~~~~~~~ 348 (365)
T cd03809 321 ----LDPEALAAAIERLLEDP-ALREELRERGL 348 (365)
T ss_pred ----CCHHHHHHHHHHHhcCH-HHHHHHHHHHH
Confidence 47889999999999886 33444444444
No 89
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.62 E-value=0.00011 Score=71.03 Aligned_cols=314 Identities=16% Similarity=0.198 Sum_probs=179.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCchhhhcc-CCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILL-PRKAQTQLQH-FNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~-~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.+-+---+.|-++-..+|.++|.++ +..+++-+ ++...+.+.. ++ ..+...-+|++
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~---~~v~h~YlP~D----------------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG---DSVIHQYLPLD----------------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC---CCeEEEecCcC-----------------
Confidence 4445556789999999999999999 88877766 4444444432 33 22444444421
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEE-c--CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFY-D--IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~-D--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
....+...++.++||++|. + +++.-..-+++.|+|.+.+..=.. .
T Consensus 111 ------------~~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-~------------------- 158 (419)
T COG1519 111 ------------LPIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-D------------------- 158 (419)
T ss_pred ------------chHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-h-------------------
Confidence 1123455677889999554 4 577777888899999997642110 0
Q ss_pred cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEec
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTG 249 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 249 (471)
..++ .|.....+.+.+ +.+.+.++..+-.+-+ .+ ..-=-++|..+|
T Consensus 159 -------rS~~-------------------~y~k~~~~~~~~---~~~i~li~aQse~D~~--Rf---~~LGa~~v~v~G 204 (419)
T COG1519 159 -------RSFA-------------------RYAKLKFLARLL---FKNIDLILAQSEEDAQ--RF---RSLGAKPVVVTG 204 (419)
T ss_pred -------hhhH-------------------HHHHHHHHHHHH---HHhcceeeecCHHHHH--HH---HhcCCcceEEec
Confidence 0000 111112223222 3456667766553222 12 221113477778
Q ss_pred cCCCCC-CCCCChhh---hhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh--cCCceEEEeCCCCCCCcccccC
Q 012080 250 PVLHEP-AKTPSEER---WDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL--TGLCFLIALKPPTGASTVEEAF 323 (471)
Q Consensus 250 p~~~~~-~~~~~~~~---l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
-+-... +....+.. +...++.. ..+++.-+|... ..+..-....++.+ .+...||+-+ -
T Consensus 205 NlKfd~~~~~~~~~~~~~~r~~l~~~---r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPR-----------H 269 (419)
T COG1519 205 NLKFDIEPPPQLAAELAALRRQLGGH---RPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPR-----------H 269 (419)
T ss_pred ceeecCCCChhhHHHHHHHHHhcCCC---CceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecC-----------C
Confidence 664331 11122222 33334332 266776666532 33334445555533 2455666644 2
Q ss_pred ChhHHH---hhCCC-----------------cEEeccccC-chhhhcccCcce-----eeccCCcchHHHHHhhCCcEEe
Q 012080 324 PDGFAE---RTKGR-----------------GVVCGEWVE-QMPILEHSSVGC-----FVSHCGFGSMWESLMSDCQIVL 377 (471)
Q Consensus 324 p~~~~~---~~~~~-----------------nv~~~~~~p-q~~lL~~~~v~~-----~ItHgG~~s~~Eal~~GvP~v~ 377 (471)
|++|.+ -.... +|++.|-+- ...++.-+++ + |+-+||.| .+|.+++|+|+|.
T Consensus 270 pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~ 347 (419)
T COG1519 270 PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIF 347 (419)
T ss_pred hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEe
Confidence 332221 11112 334433332 1223333443 2 45689988 7899999999999
Q ss_pred ccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhh
Q 012080 378 VPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 378 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
=|++.-|.+-++++. ..|+|+.++ +.+.|.++++.+++|+ +.++.|.+++.++=+.
T Consensus 348 Gp~~~Nf~ei~~~l~-~~ga~~~v~-------~~~~l~~~v~~l~~~~-~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 348 GPYTFNFSDIAERLL-QAGAGLQVE-------DADLLAKAVELLLADE-DKREAYGRAGLEFLAQ 403 (419)
T ss_pred CCccccHHHHHHHHH-hcCCeEEEC-------CHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHH
Confidence 999999999999999 999999988 3667888888888874 4555555555554443
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=5.1e-05 Score=80.03 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred CCcEEeccccCc-hhhhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
.++|.+.+|.+. ..+|..+++ ||. +.|+ ++++||+++|+|+|+.... .....+. +-..|..++...
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~-dg~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQ-EGVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHcc-CCCCEEEeCCCC--
Confidence 467888888875 458888888 654 4564 7999999999999997642 3455565 555788888633
Q ss_pred cccHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 012080 408 WFSKESLCKAIKCVMDKESEVGNVVRRNHAKW 439 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l 439 (471)
.+.+++.++|.+++.+. .....+++++++.
T Consensus 644 -~~~~~La~aL~~ll~~l-~~~~~l~~~ar~~ 673 (694)
T PRK15179 644 -VTAPDVAEALARIHDMC-AADPGIARKAADW 673 (694)
T ss_pred -CChHHHHHHHHHHHhCh-hccHHHHHHHHHH
Confidence 56667777777766532 1111566555443
No 91
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.61 E-value=3e-05 Score=78.93 Aligned_cols=192 Identities=9% Similarity=0.073 Sum_probs=106.1
Q ss_pred cCCCeEEec-cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHH--hc--CCceEEEeCCCCC
Q 012080 241 YNKPVFLTG-PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLE--LT--GLCFLIALKPPTG 315 (471)
Q Consensus 241 ~~~~v~~vG-p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~~~~~~~~~~ 315 (471)
.+-++.||| |+...-+.....++..+.+.-.+++++|-+--||-..-=...+-.++++.+ .. +.+|++......
T Consensus 379 ~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~- 457 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK- 457 (608)
T ss_pred cCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-
Confidence 567899999 665542222233444444444445678989899874311122333555554 22 345555432111
Q ss_pred CCcccccCChhHHHhhCCCc---EEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEecc-ccccchhhHHHH
Q 012080 316 ASTVEEAFPDGFAERTKGRG---VVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVP-HLGDQILNTRLL 391 (471)
Q Consensus 316 ~~~~~~~~p~~~~~~~~~~n---v~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v 391 (471)
..+.+.+.....+ +.+..--...++++.|++ .+.-.|- .++|+..+|+|||++= ...=-+.-|+++
T Consensus 458 -------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~L 527 (608)
T PRK01021 458 -------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYI 527 (608)
T ss_pred -------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHH
Confidence 0111121111111 122100012578888888 7777776 5789999999998862 322333556666
Q ss_pred HHhh----------cceEEeecccC---CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 392 AEEL----------KVAVEVEREEN---GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 392 ~~~~----------G~G~~l~~~~~---~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
. .. =+|..+-++=. +..|+++|.+++ ++|.|+ +..+.+++..+++++.+.+.
T Consensus 528 v-ki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~-~~r~~~~~~l~~lr~~Lg~~ 592 (608)
T PRK01021 528 F-KIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTS-QSKEKQKDACRDLYQAMNES 592 (608)
T ss_pred H-hccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCH-HHHHHHHHHHHHHHHHhcCC
Confidence 6 41 11222222111 358999999997 888774 56677888888888888543
No 92
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.61 E-value=1.4e-05 Score=78.88 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=79.4
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhcC--CceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccCc--h---h
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELTG--LCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQ--M---P 346 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq--~---~ 346 (471)
+.+++.+|.+.......+..+++++.... .++++ +|.+...+. + ....+.. -++++.+.+|+++ . +
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~~~~----l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSDFEK----C-KAYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCccHHH----H-HHHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 36667778764322333555666665443 33333 343221111 1 1111111 2467888888754 2 2
Q ss_pred hhcccCcceeec--c--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 347 ILEHSSVGCFVS--H--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 347 lL~~~~v~~~It--H--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
.++.+++ +|. + |-..+++||+++|+|+|+.-..+ .....++ .-..|..++. -+.+++.++|.+++
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~---g~~eiv~-~~~~G~lv~~-----~d~~~la~~i~~l~ 322 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS---GPRDIIK-PGLNGELYTP-----GNIDEFVGKLNKVI 322 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCC---ChHHHcc-CCCceEEECC-----CCHHHHHHHHHHHH
Confidence 4555677 553 3 33479999999999999875222 2223455 5557888875 58899999999999
Q ss_pred ccC
Q 012080 423 DKE 425 (471)
Q Consensus 423 ~~~ 425 (471)
+|+
T Consensus 323 ~~~ 325 (359)
T PRK09922 323 SGE 325 (359)
T ss_pred hCc
Confidence 987
No 93
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.54 E-value=3.4e-05 Score=75.72 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=106.7
Q ss_pred hccCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHH
Q 012080 215 LKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQE 294 (471)
Q Consensus 215 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 294 (471)
....+.+++.|... .+.+...++.+...+.+-... ..|-... .+...++..|.+.. ......
T Consensus 151 ~~~~d~ii~~S~~~-----~~~~~~~~~~~~~vi~~~~d~----------~~~~~~~-~~~~~il~~G~~~~--~K~~~~ 212 (351)
T cd03804 151 AARVDYFIANSRFV-----ARRIKKYYGRDATVIYPPVDT----------DRFTPAE-EKEDYYLSVGRLVP--YKRIDL 212 (351)
T ss_pred hcCCCEEEECCHHH-----HHHHHHHhCCCcEEECCCCCH----------hhcCcCC-CCCCEEEEEEcCcc--ccChHH
Confidence 56788888877642 233344444444444321110 1111111 11234555677653 234566
Q ss_pred HHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCch---hhhcccCcceeeccCCc-chHHHHHh
Q 012080 295 LLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQM---PILEHSSVGCFVSHCGF-GSMWESLM 370 (471)
Q Consensus 295 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~~~v~~~ItHgG~-~s~~Eal~ 370 (471)
++++++..+.+++++-. +.. .+.+.+ ...+||.+.+++|+. .++..+++-++-+.-|. .+++||++
T Consensus 213 li~a~~~~~~~l~ivG~-g~~--------~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~~~~Eama 282 (351)
T cd03804 213 AIEAFNKLGKRLVVIGD-GPE--------LDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGIVPVEAMA 282 (351)
T ss_pred HHHHHHHCCCcEEEEEC-Chh--------HHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCchHHHHHH
Confidence 67777766666665533 211 112222 335789999999974 47888898333344444 46789999
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHH
Q 012080 371 SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNH 436 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a 436 (471)
+|+|+|+....+ ....++ +-+.|..++. -+.+++.++|.++++|+...++.+++++
T Consensus 283 ~G~Pvi~~~~~~----~~e~i~-~~~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~~~ 338 (351)
T cd03804 283 SGTPVIAYGKGG----ALETVI-DGVTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRAHA 338 (351)
T ss_pred cCCCEEEeCCCC----Ccceee-CCCCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHHHH
Confidence 999999986432 344455 6568888876 5788899999999988522333344443
No 94
>PLN02949 transferase, transferring glycosyl groups
Probab=98.53 E-value=0.0001 Score=74.80 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCcEEeccccCchh---hhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhh-c-ceEEeec
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL-K-VAVEVER 403 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~-G-~G~~l~~ 403 (471)
.++|.+.+++|+.+ +|..+++ +|+ +=|. .++.||+++|+|+|+....+-- ...+.+.- | .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 45788888998654 6778887 662 2333 3899999999999998653310 00111000 1 23221
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
-+.+++.++|.++++++.+..+.+.+++++..+.+ ..++..+++.+.+.++
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F----S~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRANRF----SEQRFNEDFKDAIRPI 457 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHH
Confidence 26789999999999854345556667766654432 2233444554444443
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.51 E-value=7.8e-05 Score=73.82 Aligned_cols=111 Identities=10% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCcEEecccc--Cch---hhhcccCcceeeccC---C-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 333 GRGVVCGEWV--EQM---PILEHSSVGCFVSHC---G-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 333 ~~nv~~~~~~--pq~---~lL~~~~v~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
.+++.+.++. ++. .+++.+++ |+.-. | ..+++||+++|+|+|+.... .....+. .-..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~-~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIE-DGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhcc-cCCceEEeC-
Confidence 3466666665 332 56788888 77432 2 35999999999999987532 3334455 555676554
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
+.+.+..+|.++++++ +..+.+.++|++.. .+.=.-...++++++.+.
T Consensus 323 ------~~~~~a~~i~~ll~~~-~~~~~~~~~a~~~~---~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 ------TVEEAAVRILYLLRDP-ELRRKMGANAREHV---RENFLITRHLKDYLYLIS 370 (372)
T ss_pred ------CcHHHHHHHHHHHcCH-HHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHH
Confidence 3456778999999875 33344445554432 222233344555555443
No 96
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.51 E-value=1e-06 Score=85.85 Aligned_cols=246 Identities=16% Similarity=0.103 Sum_probs=123.4
Q ss_pred HHHhHHHHHHHHHhCCCcEEEE--c-C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccccCCCCC
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFY--D-I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAELAMPPA 177 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~--D-~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 177 (471)
+......+.+.+++.+||+||+ | + ..+++.+|..++||++.+....-.. ..-.
T Consensus 52 ~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~-----------------------d~~~ 108 (346)
T PF02350_consen 52 TGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG-----------------------DRTE 108 (346)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S------------------------TTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc-----------------------ccCC
Confidence 4446678888888999999766 4 5 7778889999999988665431100 0000
Q ss_pred CCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH--HcCCCeEEeccCCCCC
Q 012080 178 GYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR--QYNKPVFLTGPVLHEP 255 (471)
Q Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~~~~~v~~vGp~~~~~ 255 (471)
+.| ....++.. -+.++..++.+-. ..+.+.. .-+.+++.+|...-+.
T Consensus 109 g~~------------------------de~~R~~i--~~la~lhf~~t~~-----~~~~L~~~G~~~~rI~~vG~~~~D~ 157 (346)
T PF02350_consen 109 GMP------------------------DEINRHAI--DKLAHLHFAPTEE-----ARERLLQEGEPPERIFVVGNPGIDA 157 (346)
T ss_dssp STT------------------------HHHHHHHH--HHH-SEEEESSHH-----HHHHHHHTT--GGGEEE---HHHHH
T ss_pred CCc------------------------hhhhhhhh--hhhhhhhccCCHH-----HHHHHHhcCCCCCeEEEEChHHHHH
Confidence 111 11111111 1224444444332 1122211 1234688888443220
Q ss_pred C---CCCChhhh--hhccCCCCCCcEEEEEeCccccCC-H---HHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCCh
Q 012080 256 A---KTPSEERW--DKWLGGFERSSVVYCAFGSQIILE-K---KQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPD 325 (471)
Q Consensus 256 ~---~~~~~~~l--~~~l~~~~~~~vV~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~ 325 (471)
- .....+++ ..++.. .+++.+++++=...... + ..+.+++.++... +.+++|.+... +..-+
T Consensus 158 l~~~~~~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~-------p~~~~ 229 (346)
T PF02350_consen 158 LLQNKEEIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN-------PRGSD 229 (346)
T ss_dssp HHHHHHTTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S--------HHHHH
T ss_pred HHHhHHHHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC-------chHHH
Confidence 0 00011111 122112 34679999995554444 3 4455566666544 77888886521 00111
Q ss_pred hHHHhhCC-CcEEeccccCc---hhhhcccCcceeeccCCcchHH-HHHhhCCcEEeccccccchhhHHHHHH-hhcceE
Q 012080 326 GFAERTKG-RGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMW-ESLMSDCQIVLVPHLGDQILNTRLLAE-ELKVAV 399 (471)
Q Consensus 326 ~~~~~~~~-~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~-Eal~~GvP~v~~P~~~DQ~~na~~v~~-~~G~G~ 399 (471)
.+.+.... +|+++.+-+++ ..+|+++++ +|+..| ++. ||.+.|+|+|.+ +++..|-+. ..|..+
T Consensus 230 ~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i------R~~geRqe~r~~~~nv 299 (346)
T PF02350_consen 230 IIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI------RDSGERQEGRERGSNV 299 (346)
T ss_dssp HHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC------SSS-S-HHHHHTTSEE
T ss_pred HHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe------cCCCCCHHHHhhcceE
Confidence 22222221 48887766654 567889998 999999 666 999999999999 333333331 334444
Q ss_pred EeecccCCcccHHHHHHHHHHHhccC
Q 012080 400 EVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
.+. .+.++|.++|++++.+.
T Consensus 300 lv~------~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 300 LVG------TDPEAIIQAIEKALSDK 319 (346)
T ss_dssp EET------SSHHHHHHHHHHHHH-H
T ss_pred EeC------CCHHHHHHHHHHHHhCh
Confidence 433 68999999999999753
No 97
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.49 E-value=6.4e-05 Score=73.22 Aligned_cols=333 Identities=16% Similarity=0.124 Sum_probs=169.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHH
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSIN 96 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (471)
|++++.-..|++. ...|.++|+++.-++.+.+-...+ .++.| ++.. ++ .+..+ -..+.+
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~~--M~~~G-----~~~l-~d----------~~~ls--vmG~~E 59 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGPR--MQAAG-----VESL-FD----------MEELS--VMGFVE 59 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEechH--HHhCC-----Ccee-cc----------hHHhh--hccHHH
Confidence 4566666777665 356888888887666666554432 22233 2211 00 01011 012333
Q ss_pred HHHHH--HHHhHHHHHHHHHhCCCcE-EEEcC---ccchHHHHHHcCCc--eEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 97 LLVIA--MDRCRGQVEAVIKAAKPRL-LFYDI---AYWMATISKSLSIK--CIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 97 ~~~~~--~~~~~~~l~~~l~~~~~Dl-vi~D~---~~~~~~~A~~~giP--~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
.+... +......+.+.+++.+||+ |++|+ +..-...+++.|+| ++.+.+..
T Consensus 60 vl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~Pq--------------------- 118 (373)
T PF02684_consen 60 VLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQ--------------------- 118 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCc---------------------
Confidence 33332 3345667788888889999 66784 44444455678888 55444321
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEe
Q 012080 169 EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLT 248 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~v 248 (471)
.+. ++.+ ....+.+. .|..++ ..-+|++++ .. .+-++.||
T Consensus 119 ----------vWA-----------------Wr~~-R~~~i~~~------~D~ll~--ifPFE~~~y---~~-~g~~~~~V 158 (373)
T PF02684_consen 119 ----------VWA-----------------WRPG-RAKKIKKY------VDHLLV--IFPFEPEFY---KK-HGVPVTYV 158 (373)
T ss_pred ----------eee-----------------eCcc-HHHHHHHH------HhheeE--CCcccHHHH---hc-cCCCeEEE
Confidence 111 0111 11122221 232222 122343333 33 44679999
Q ss_pred c-cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHH---h--cCCceEEEeCCCCCCCccccc
Q 012080 249 G-PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLE---L--TGLCFLIALKPPTGASTVEEA 322 (471)
Q Consensus 249 G-p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~---~--~~~~~~~~~~~~~~~~~~~~~ 322 (471)
| |+...-.....+....+.+ -.+++++|-+--||-..-=...+-.++++.+ . .+.++++......
T Consensus 159 GHPl~d~~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~-------- 229 (373)
T PF02684_consen 159 GHPLLDEVKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV-------- 229 (373)
T ss_pred CCcchhhhccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH--------
Confidence 9 6665433223334433433 2234568999899974311122233344432 2 3455665543211
Q ss_pred CChhHHHhh--CCCcEEecc-ccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEecc-ccccchhhHHHHHHhhcc-
Q 012080 323 FPDGFAERT--KGRGVVCGE-WVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVP-HLGDQILNTRLLAEELKV- 397 (471)
Q Consensus 323 ~p~~~~~~~--~~~nv~~~~-~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~- 397 (471)
..+-+.... ...++.+.. .-.-.+++..+++ .+.-.|- .++|+..+|+|||++= ...=-+.-|+++. ...-
T Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~i 305 (373)
T PF02684_consen 230 HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYI 305 (373)
T ss_pred HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEe
Confidence 001011111 112222211 1234568888887 6666665 6789999999998873 3334455666665 3322
Q ss_pred -------eEEeec--ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 398 -------AVEVER--EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 398 -------G~~l~~--~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
|..+-+ -+ +..|++.|.+++.++|+|+ +..+..+...+.+.+++...
T Consensus 306 sL~Niia~~~v~PEliQ-~~~~~~~i~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~ 361 (373)
T PF02684_consen 306 SLPNIIAGREVVPELIQ-EDATPENIAAELLELLENP-EKRKKQKELFREIRQLLGPG 361 (373)
T ss_pred echhhhcCCCcchhhhc-ccCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhc
Confidence 111111 01 4689999999999999986 33444555555565555544
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.47 E-value=0.00053 Score=72.76 Aligned_cols=93 Identities=6% Similarity=-0.006 Sum_probs=59.0
Q ss_pred CcEEecccc-Cc---hhhhcc-cC-cceeec---cCC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 334 RGVVCGEWV-EQ---MPILEH-SS-VGCFVS---HCG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 334 ~nv~~~~~~-pq---~~lL~~-~~-v~~~It---HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
.+|.+.++. +. .+++.. ++ .++||. .=| ..+++||+++|+|+|+.-. -..+..++ +-..|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~-dg~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQ-DGVSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhc-CCCcEEEeCC
Confidence 456666654 32 234432 21 122663 223 3599999999999998643 34666676 6667989887
Q ss_pred ccCCcccHHHHHHHHHHHh----ccCchhhHHHHHHHH
Q 012080 404 EENGWFSKESLCKAIKCVM----DKESEVGNVVRRNHA 437 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll----~~~~~~~~~~~~~a~ 437 (471)
-+++++.++|.+++ .|+ +.++.+.++++
T Consensus 694 -----~D~eaLA~aL~~ll~kll~dp-~~~~~ms~~a~ 725 (784)
T TIGR02470 694 -----YHGEEAAEKIVDFFEKCDEDP-SYWQKISQGGL 725 (784)
T ss_pred -----CCHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Confidence 57788999998876 453 44445555544
No 99
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.44 E-value=1.4e-06 Score=70.87 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=78.8
Q ss_pred EEEEEeCccccCCH---HHHHHHHHHHHhcCC-ceEEEeCCCCCCCcccccCChhHHHhhCCCcEEe--ccccCc-hhhh
Q 012080 276 VVYCAFGSQIILEK---KQFQELLLGLELTGL-CFLIALKPPTGASTVEEAFPDGFAERTKGRGVVC--GEWVEQ-MPIL 348 (471)
Q Consensus 276 vV~vs~Gs~~~~~~---~~~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~--~~~~pq-~~lL 348 (471)
.+||+-||.....- -...+..+.|.+.|. +.+..++.+... .++......+..++.+ .+|-|- .+..
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~------~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF------FGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC------CCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 89999999864111 112445566666774 677778765211 3333222112334343 446675 5677
Q ss_pred cccCcceeeccCCcchHHHHHhhCCcEEecc----ccccchhhHHHHHHhhcceEEee
Q 012080 349 EHSSVGCFVSHCGFGSMWESLMSDCQIVLVP----HLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 349 ~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P----~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
+.+++ +|+|+|.||++|.|..|+|.|+++ .-..|-.-|..++ +.|-=..-.
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C~ 133 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYCT 133 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEee
Confidence 77888 999999999999999999999999 3467888888888 666544333
No 100
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.43 E-value=0.00025 Score=71.41 Aligned_cols=95 Identities=14% Similarity=-0.020 Sum_probs=59.8
Q ss_pred CCcEEeccccCch---hhhcccCcceeec-----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHH---hhcceEEe
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVS-----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAE---ELKVAVEV 401 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~It-----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l 401 (471)
.++|.+.+++|+. .+|..+++ +|+ |-| -++.||+++|+|+|+.-..+. ..-+.+ .-+.|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp----~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP----LLDIVVPWDGGPTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC----chheeeccCCCCceEEe
Confidence 3578888899865 47778887 553 233 488999999999998654321 111220 12355542
Q ss_pred ecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 402 EREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
-+++++.++|.++++++.+..+.+++++++..+
T Consensus 377 -------~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~ 409 (419)
T cd03806 377 -------STAEEYAEAIEKILSLSEEERLRIRRAARSSVK 409 (419)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 278899999999998753333334444444433
No 101
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.00032 Score=67.08 Aligned_cols=350 Identities=15% Similarity=0.127 Sum_probs=183.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
+++|.++..-..|++.= -.|.++|+++=-+|.|++-..-. .++.| +.++- +++..+ ...
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG~~--m~aeG-------~~sl~---------~~~els--vmG 59 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGGEK--MEAEG-------LESLF---------DMEELS--VMG 59 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEeccHH--HHhcc-------Ccccc---------CHHHHH--Hhh
Confidence 46889999888898764 45777887762266666544422 22222 11110 000000 112
Q ss_pred hHHHHHHHHH--HhHHHHHHHHHhCCCcE-EEEcCccchHHHH---HHcC--CceEEEecchhHHHHHhhccccCCCCCC
Q 012080 94 SINLLVIAMD--RCRGQVEAVIKAAKPRL-LFYDIAYWMATIS---KSLS--IKCIKYNVVCAASIATALVPARNVPKDR 165 (471)
Q Consensus 94 ~~~~~~~~~~--~~~~~l~~~l~~~~~Dl-vi~D~~~~~~~~A---~~~g--iP~v~~~~~~~~~~~~~~~p~~~~~~~~ 165 (471)
+.+.+....+ ...+++.+.+.+.+||+ |..|..-....+| ++.| +|.|.+.+...+.
T Consensus 60 f~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA--------------- 124 (381)
T COG0763 60 FVEVLGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA--------------- 124 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee---------------
Confidence 3344444322 34456666666779999 5567533344555 4566 8988765432211
Q ss_pred CCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCe
Q 012080 166 PVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPV 245 (471)
Q Consensus 166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v 245 (471)
+.+ ++ .... ....|.++. ..=+|++++ .. ++-++
T Consensus 125 --------------------Wr~-------------~R-a~~i------~~~~D~lLa--ilPFE~~~y---~k-~g~~~ 158 (381)
T COG0763 125 --------------------WRP-------------KR-AVKI------AKYVDHLLA--ILPFEPAFY---DK-FGLPC 158 (381)
T ss_pred --------------------ech-------------hh-HHHH------HHHhhHeee--ecCCCHHHH---Hh-cCCCe
Confidence 000 10 0111 111232222 112343333 33 33458
Q ss_pred EEec-cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHH-----hcCCceEEEeCCCCCCCcc
Q 012080 246 FLTG-PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLE-----LTGLCFLIALKPPTGASTV 319 (471)
Q Consensus 246 ~~vG-p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~-----~~~~~~~~~~~~~~~~~~~ 319 (471)
.||| |+...-+-.+.++.+.+-+....++.++.+--||-..-=......+.++.+ ..+.+|++-+....
T Consensus 159 ~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~----- 233 (381)
T COG0763 159 TYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK----- 233 (381)
T ss_pred EEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-----
Confidence 9999 554433223344555565655555679999999975411111222333332 23566776643211
Q ss_pred cccCChhHHHhhCCCcE-Eecccc-Cc--hhhhcccCcceeeccCCcchHHHHHhhCCcEEecc-ccccchhhHHHHHHh
Q 012080 320 EEAFPDGFAERTKGRGV-VCGEWV-EQ--MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVP-HLGDQILNTRLLAEE 394 (471)
Q Consensus 320 ~~~~p~~~~~~~~~~nv-~~~~~~-pq--~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~ 394 (471)
-+.........+. ...-++ ++ .+++..+++ .+.-+|- -++|+.-+|+|||+.= ...=-+.-|+++. .
T Consensus 234 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k 305 (381)
T COG0763 234 ----YRRIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLV-K 305 (381)
T ss_pred ----HHHHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhc-c
Confidence 0111111111110 011122 22 246666777 7777776 4689999999999862 1111233444444 3
Q ss_pred hcc--------eEEeecc--cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 395 LKV--------AVEVERE--ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 395 ~G~--------G~~l~~~--~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
..- |..+-++ + +..+++.|.+++.+++.| +.+.+.+++....+++.++..+..+.+.+.+++.+
T Consensus 306 ~~yisLpNIi~~~~ivPEliq-~~~~pe~la~~l~~ll~~-~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~ 379 (381)
T COG0763 306 LPYVSLPNILAGREIVPELIQ-EDCTPENLARALEELLLN-GDRREALKEKFRELHQYLREDPASEIAAQAVLELL 379 (381)
T ss_pred CCcccchHHhcCCccchHHHh-hhcCHHHHHHHHHHHhcC-hHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 221 1111111 1 358899999999999998 46777899999999999988877777777777665
No 102
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.33 E-value=0.00059 Score=69.99 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=51.3
Q ss_pred CcEEeccccCch---hhhcccCcceeecc---CCc-chHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEeecc
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVSH---CGF-GSMWESLMSDCQIVLVPHLG--DQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
.++++....++. .++..+++ ++.- -|. .+.+||+++|+|+|+....+ |--.+...-. ..|.|..++.
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~-~~~~G~~~~~- 426 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDT-GEGTGFVFEG- 426 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCC-CCCCeEEeCC-
Confidence 466543233332 46778888 6632 122 47899999999999875422 2111111111 3457888886
Q ss_pred cCCcccHHHHHHHHHHHhcc
Q 012080 405 ENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~ 424 (471)
-+.+++.++|.+++..
T Consensus 427 ----~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 ----YNADALLAALRRALAL 442 (476)
T ss_pred ----CCHHHHHHHHHHHHHH
Confidence 5788999999999863
No 103
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.32 E-value=0.0003 Score=67.44 Aligned_cols=347 Identities=12% Similarity=0.092 Sum_probs=186.1
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCch--hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKG-HKITILLPRKAQ--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
+++||+++. +++-.+.-+.++.+++.+.+ .+..++.+.... +..... ++...++.|+ ..+ ... +
T Consensus 2 ~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~------le~~~i~~pd-y~L----~i~-~ 68 (383)
T COG0381 2 KMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV------LELFGIRKPD-YDL----NIM-K 68 (383)
T ss_pred CceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH------HHHhCCCCCC-cch----hcc-c
Confidence 456776664 77889999999999999987 887777777765 322211 1111111000 001 000 0
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCC
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDR 165 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~ 165 (471)
.. .-+......+...+.+++++.+||+|++. . +.+|..+|-+++||+..+-.+.-..
T Consensus 69 ~~----~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~--------------- 129 (383)
T COG0381 69 PG----QTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG--------------- 129 (383)
T ss_pred cC----CCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC---------------
Confidence 00 11233344567788899999999998775 4 6677889999999998765432111
Q ss_pred CCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHH-HHHHHcCC-
Q 012080 166 PVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCE-YIARQYNK- 243 (471)
Q Consensus 166 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~- 243 (471)
. ..+|... .|..- -.-++..++++-. ..+ -.+...++
T Consensus 130 ---------~-~~~PEE~-------------------------NR~l~-~~~S~~hfapte~-----ar~nLl~EG~~~~ 168 (383)
T COG0381 130 ---------D-LYFPEEI-------------------------NRRLT-SHLSDLHFAPTEI-----ARKNLLREGVPEK 168 (383)
T ss_pred ---------C-CCCcHHH-------------------------HHHHH-HHhhhhhcCChHH-----HHHHHHHcCCCcc
Confidence 0 1123211 11000 0001112221111 111 11222333
Q ss_pred CeEEeccCCCC----C--CCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHH----Hhc-CCceEEEeCC
Q 012080 244 PVFLTGPVLHE----P--AKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGL----ELT-GLCFLIALKP 312 (471)
Q Consensus 244 ~v~~vGp~~~~----~--~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al----~~~-~~~~~~~~~~ 312 (471)
+++.+|-...+ . ............++.. .+..+++++=-..+.. +-++.+++++ +.. +..++..+-.
T Consensus 169 ~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~ 246 (383)
T COG0381 169 RIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHP 246 (383)
T ss_pred ceEEeCChHHHHHHHHHhhhccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 36777733211 0 0111111111112222 2348888775444433 3345555544 334 4444544321
Q ss_pred CCCCCcccccCChhHHHhhCC-CcEEecc---ccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhH
Q 012080 313 PTGASTVEEAFPDGFAERTKG-RGVVCGE---WVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNT 388 (471)
Q Consensus 313 ~~~~~~~~~~~p~~~~~~~~~-~nv~~~~---~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 388 (471)
. ..+-+-....+++ +++.+.+ |.+...++.++-+ ++|-.|. ---||-..|+|++++=..-+++.
T Consensus 247 ~-------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE-- 314 (383)
T COG0381 247 R-------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE-- 314 (383)
T ss_pred C-------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc--
Confidence 1 0011111233333 4666543 5567778889987 9998775 46799999999999999999987
Q ss_pred HHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcc
Q 012080 389 RLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLV 464 (471)
Q Consensus 389 ~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 464 (471)
.. +.|.-+.+. .+.+.|.+++.++++++ +..+|.+ ......|.. .+.+.|++.+.++.
T Consensus 315 --~v-~agt~~lvg------~~~~~i~~~~~~ll~~~-----~~~~~m~---~~~npYgdg-~as~rIv~~l~~~~ 372 (383)
T COG0381 315 --GV-EAGTNILVG------TDEENILDAATELLEDE-----EFYERMS---NAKNPYGDG-NASERIVEILLNYF 372 (383)
T ss_pred --ce-ecCceEEeC------ccHHHHHHHHHHHhhCh-----HHHHHHh---cccCCCcCc-chHHHHHHHHHHHh
Confidence 23 455555555 57799999999999987 6655433 333333322 25566666665544
No 104
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.32 E-value=0.00067 Score=68.18 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred EeccccCchhhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHH
Q 012080 337 VCGEWVEQMPILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKE 412 (471)
Q Consensus 337 ~~~~~~pq~~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~ 412 (471)
++.++.+..+++...++ ||.= +=.++++||+++|+|+|+.-.-. + ..+. +-+.|...+ +.+
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~-~~~ng~~~~-------~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFK-QFPNCRTYD-------DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceee-cCCceEecC-------CHH
Confidence 35556666679988888 8866 34579999999999999986432 2 3343 434444442 577
Q ss_pred HHHHHHHHHhccC
Q 012080 413 SLCKAIKCVMDKE 425 (471)
Q Consensus 413 ~l~~ai~~ll~~~ 425 (471)
++.++|.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 8999999999754
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.28 E-value=0.00074 Score=69.04 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=47.0
Q ss_pred hhhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHH-----HhhcceEEeecccCCcccHHHHHH
Q 012080 346 PILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLA-----EELKVAVEVEREENGWFSKESLCK 416 (471)
Q Consensus 346 ~lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~-----~~~G~G~~l~~~~~~~~t~~~l~~ 416 (471)
.+++.+++ ||. +-|. .+.+||+++|+|+|+....+ ....+. ..-+.|..++. -+++++.+
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~lv~~-----~d~~~la~ 420 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGFVFDD-----FNAEDLLR 420 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceEEeCC-----CCHHHHHH
Confidence 47788888 663 3344 48999999999999875421 111222 02377888886 57889999
Q ss_pred HHHHHhc
Q 012080 417 AIKCVMD 423 (471)
Q Consensus 417 ai~~ll~ 423 (471)
+|.+++.
T Consensus 421 ~i~~~l~ 427 (466)
T PRK00654 421 ALRRALE 427 (466)
T ss_pred HHHHHHH
Confidence 9999986
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.25 E-value=0.0017 Score=66.60 Aligned_cols=78 Identities=8% Similarity=-0.029 Sum_probs=52.6
Q ss_pred CcEEeccccCch---hhhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhh------cceEE
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL------KVAVE 400 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~G~~ 400 (471)
.++.+....+.. .+++.+++ ++. +-|. .+.+||+++|+|+|+....+ ....+. .- +.|..
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~-~~~~~~~~~~G~l 418 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVV-DGDPEAESGTGFL 418 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEe-cCCCCCCCCceEE
Confidence 455554444543 47788888 663 2244 38899999999999875422 222333 32 78888
Q ss_pred eecccCCcccHHHHHHHHHHHhc
Q 012080 401 VEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 401 l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
++. -+++++.++|.+++.
T Consensus 419 ~~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 419 FEE-----YDPGALLAALSRALR 436 (473)
T ss_pred eCC-----CCHHHHHHHHHHHHH
Confidence 876 678899999999887
No 107
>PLN00142 sucrose synthase
Probab=98.18 E-value=0.0011 Score=70.50 Aligned_cols=72 Identities=8% Similarity=0.080 Sum_probs=48.5
Q ss_pred eecc---CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH----hccCch
Q 012080 356 FVSH---CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV----MDKESE 427 (471)
Q Consensus 356 ~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l----l~~~~~ 427 (471)
||.= =|. .+++||+++|+|+|+... ......++ +-..|..++. -+.+++.++|.++ +.|+ +
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~-dG~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp-~ 738 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIV-DGVSGFHIDP-----YHGDEAANKIADFFEKCKEDP-S 738 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhc-CCCcEEEeCC-----CCHHHHHHHHHHHHHHhcCCH-H
Confidence 6642 444 489999999999998643 34555666 6567888886 5677788887665 4564 4
Q ss_pred hhHHHHHHHHH
Q 012080 428 VGNVVRRNHAK 438 (471)
Q Consensus 428 ~~~~~~~~a~~ 438 (471)
.++.+.++|.+
T Consensus 739 lr~~mg~~Ar~ 749 (815)
T PLN00142 739 YWNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHHH
Confidence 45555555533
No 108
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.12 E-value=0.0039 Score=64.69 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=52.1
Q ss_pred cEEeccccCch-hhhcccCcceeec---cCC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcc
Q 012080 335 GVVCGEWVEQM-PILEHSSVGCFVS---HCG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWF 409 (471)
Q Consensus 335 nv~~~~~~pq~-~lL~~~~v~~~It---HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 409 (471)
++.+.++.++. ++++.+++ ||. .=| .++++||+++|+|+|+.-.-+.. . +. . |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~-~-g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FR-S-FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Ee-e-cCCeEec------C
Confidence 35566676655 58988888 765 223 47899999999999998764422 1 22 2 2222222 3
Q ss_pred cHHHHHHHHHHHhccC
Q 012080 410 SKESLCKAIKCVMDKE 425 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~ 425 (471)
+.+++.++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 6889999999999886
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.02 E-value=0.018 Score=56.99 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=53.5
Q ss_pred CCcEEeccccCchh---hhcccCcceee------ccCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFV------SHCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~I------tHgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
.+||.+.+++|+.+ .++++++.++- +.++. +.+.|++++|+|+|+.++ ...++ ..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~-~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRR-YED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHh-hcC-cEEEe
Confidence 46899999998654 67788883332 22333 458999999999998763 22233 333 33333
Q ss_pred cccCCcccHHHHHHHHHHHhccC
Q 012080 403 REENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
. -+.+++.++|.+++.++
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcC
Confidence 2 37899999999987654
No 110
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.97 E-value=0.0022 Score=63.32 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=72.7
Q ss_pred CCcEEeccccCc-hhhhcccCcceeeccC--CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcc
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVSHC--GFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWF 409 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~ItHg--G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 409 (471)
..++.+.++.++ ..++..+++-++.++. ...+++||+++|+|+|+..... .....+. .-..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~-~~~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIE-DGENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcc-cCCCceEeCC-----C
Confidence 356777777665 3588899985555553 3469999999999999965321 2344555 6678888876 5
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhh
Q 012080 410 SKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
+.+++.++|.+++.|+ +..+.+.++|.+.++.+
T Consensus 331 d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 331 DIEALAEAIIELLNDP-KLLQKFSEAAYENAERY 363 (372)
T ss_pred cHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHh
Confidence 7899999999999985 56666777776665443
No 111
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.92 E-value=0.0017 Score=66.55 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCcEEeccccCchhhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh-----c-ceEEee
Q 012080 333 GRGVVCGEWVEQMPILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL-----K-VAVEVE 402 (471)
Q Consensus 333 ~~nv~~~~~~pq~~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~-----G-~G~~l~ 402 (471)
.++|.+.+.....++++.+++ +|.- |--++++||+++|+|+|+- |.......++ .. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~-~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIE-GADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhc-CCcccccCCceEEEC
Confidence 467888775556678888888 5533 3347999999999999994 4444555565 42 2 687777
Q ss_pred cccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 403 REENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
. -+.+++.++|.++++|+ +..+.+.+++++
T Consensus 426 ~-----~d~~~la~ai~~ll~~~-~~~~~~~~~a~~ 455 (475)
T cd03813 426 P-----ADPEALARAILRLLKDP-ELRRAMGEAGRK 455 (475)
T ss_pred C-----CCHHHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence 6 67899999999999985 444555555554
No 112
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.84 E-value=0.00025 Score=61.69 Aligned_cols=149 Identities=14% Similarity=0.118 Sum_probs=89.9
Q ss_pred CCcEEEEEeCcccc-CCHHHHHHHHHHH-Hh-cCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCc---hh
Q 012080 273 RSSVVYCAFGSQII-LEKKQFQELLLGL-EL-TGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQ---MP 346 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~-~~~~~~~~~~~al-~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq---~~ 346 (471)
+++.+++..|.... .....+...+.-+ +. ...-.++.++.+ .....+-.......-..++.+.+++++ ..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 88 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNLKENIIFLGYVPDDELDE 88 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTCGTTEEEEESHSHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----cccccccccccccccccccccccccccccccc
Confidence 35577888888765 3334433333333 21 222234444411 000001111111122457888888873 45
Q ss_pred hhcccCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 347 ILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 347 lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
++..+++ +|+. +...++.||+++|+|+|+. |...+...+. .-+.|..++. -+.+++.++|.+++
T Consensus 89 ~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~-~~~~g~~~~~-----~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 89 LYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIN-DGVNGFLFDP-----NDIEELADAIEKLL 156 (172)
T ss_dssp HHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSG-TTTSEEEEST-----TSHHHHHHHHHHHH
T ss_pred cccccee--ccccccccccccccccccccccceeec----cccCCceeec-cccceEEeCC-----CCHHHHHHHHHHHH
Confidence 8888888 7766 5567999999999999974 4556666676 7778988886 58999999999999
Q ss_pred ccCchhhHHHHHHHHH
Q 012080 423 DKESEVGNVVRRNHAK 438 (471)
Q Consensus 423 ~~~~~~~~~~~~~a~~ 438 (471)
.++ +..+.+.+++++
T Consensus 157 ~~~-~~~~~l~~~~~~ 171 (172)
T PF00534_consen 157 NDP-ELRQKLGKNARE 171 (172)
T ss_dssp HHH-HHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHhcC
Confidence 985 455555555554
No 113
>PRK14098 glycogen synthase; Provisional
Probab=97.77 E-value=0.051 Score=55.80 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=53.3
Q ss_pred CCcEEeccccCch---hhhcccCcceeeccC---Cc-chHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEeec
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVSHC---GF-GSMWESLMSDCQIVLVPHLG--DQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~ItHg---G~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~ 403 (471)
+.++.+..+++.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+ |.-.+ ..+ +-+.|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~-~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSE-DKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCC-CCCceeEeCC
Confidence 3567777777764 57888888 66422 22 37889999999988876432 21100 111 2467877775
Q ss_pred ccCCcccHHHHHHHHHHHh
Q 012080 404 EENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll 422 (471)
-+++.+.++|.+++
T Consensus 436 -----~d~~~la~ai~~~l 449 (489)
T PRK14098 436 -----YTPEALVAKLGEAL 449 (489)
T ss_pred -----CCHHHHHHHHHHHH
Confidence 67899999999876
No 114
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.73 E-value=0.0012 Score=65.66 Aligned_cols=112 Identities=11% Similarity=0.043 Sum_probs=73.2
Q ss_pred CcEEeccccCch---hhhcccCcceeecc----CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEe-ecc
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVSH----CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEV-ERE 404 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~ItH----gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l-~~~ 404 (471)
.++++.+++|+. ++++.+++ +|.- -|. .+++||+++|+|+|+.... .+...++ +-..|..+ +.
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~-~~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVL-EGITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcc-cCCceEEEeCC-
Confidence 567888899864 45888888 6642 343 5788999999999997652 3445555 55567644 33
Q ss_pred cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 405 ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
.+.+++.++|.++++|+ ..++.+++-++...+.=.-.+.++++.+.+.+
T Consensus 329 ----~d~~~la~~I~~ll~d~-----~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 ----MTSDSIISDINRTLADP-----ELTQIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ----CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 57899999999999986 44333333333333333344555566655544
No 115
>PLN02316 synthase/transferase
Probab=97.72 E-value=0.12 Score=56.78 Aligned_cols=79 Identities=5% Similarity=-0.129 Sum_probs=51.4
Q ss_pred cEEeccccCch---hhhcccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHH------------hh
Q 012080 335 GVVCGEWVEQM---PILEHSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAE------------EL 395 (471)
Q Consensus 335 nv~~~~~~pq~---~lL~~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~------------~~ 395 (471)
++.+....+.. .+++.+++ |+. =+=..+.+||+++|+|.|+....+ ....|.+ .-
T Consensus 901 rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~~ 974 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGLE 974 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhccccccccccccccccC
Confidence 45544344432 57888888 773 222358999999999988765321 1222220 12
Q ss_pred cceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 396 KVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 396 G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+.|..++. -+++.|..+|.+++.+
T Consensus 975 ~tGflf~~-----~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 975 PNGFSFDG-----ADAAGVDYALNRAISA 998 (1036)
T ss_pred CceEEeCC-----CCHHHHHHHHHHHHhh
Confidence 46877776 6888999999999975
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.69 E-value=0.045 Score=54.81 Aligned_cols=116 Identities=14% Similarity=0.046 Sum_probs=63.7
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhcCCce-EEEeCCCCCCCcccccCChhHHHhhCCCcEEecccc-Cc---hhhhcc
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELTGLCF-LIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWV-EQ---MPILEH 350 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~-pq---~~lL~~ 350 (471)
.+++..|.........+..+++|+...+.++ ++.+|.+... . ..++...++. ++ .++++.
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~------~---------~~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF------T---------AGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc------c---------ccceEEecCcCCHHHHHHHHHh
Confidence 3444455422222233466777776654443 4444432110 1 1233433444 22 345666
Q ss_pred cCcceeecc----CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHH
Q 012080 351 SSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 351 ~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~ 419 (471)
+++ ||.- |--++++||+++|+|+|+....+ ....+. . +.|..++. -+.+.|.+++.
T Consensus 307 aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~-~-~~G~lv~~-----~d~~~La~~~~ 366 (405)
T PRK10125 307 MDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQ-K-SGGKTVSE-----EEVLQLAQLSK 366 (405)
T ss_pred CCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEe-C-CcEEEECC-----CCHHHHHhccC
Confidence 777 6642 33468999999999999987654 222333 3 57888886 45666776543
No 117
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.67 E-value=0.00088 Score=66.80 Aligned_cols=173 Identities=13% Similarity=0.123 Sum_probs=91.7
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccCchhhh---
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQMPIL--- 348 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~~lL--- 348 (471)
+..++|.+|......+++.+...++-|+..+.-.+|..+.+...+ ..+-..+.... ..+.+++.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~---~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~ 359 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE---ARLRRRFAAHGVDPDRIIFSPVAPREEHLRRY 359 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH---HHHHHHHHHTTS-GGGEEEEE---HHHHHHHG
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH---HHHHHHHHHcCCChhhEEEcCCCCHHHHHHHh
Confidence 355999999999999999998888888888888888876321110 11111222211 23557777777765443
Q ss_pred cccCcceee---ccCCcchHHHHHhhCCcEEeccc-cccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 349 EHSSVGCFV---SHCGFGSMWESLMSDCQIVLVPH-LGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 349 ~~~~v~~~I---tHgG~~s~~Eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
...|+ ++ ..+|..|++|||+.|||+|.+|- ..=.+.-|..+. .+|+.-.+- -+.++-.+.--++-.|
T Consensus 360 ~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~-~lGl~ElIA------~s~~eYv~~Av~La~D 430 (468)
T PF13844_consen 360 QLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILR-ALGLPELIA------DSEEEYVEIAVRLATD 430 (468)
T ss_dssp GG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHH-HHT-GGGB-------SSHHHHHHHHHHHHH-
T ss_pred hhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHH-HcCCchhcC------CCHHHHHHHHHHHhCC
Confidence 44665 43 46788999999999999999992 334456667788 888886666 3555555444466666
Q ss_pred CchhhHHHHHHHHHHHhhhcCC--CchhHHHHHHHHHHH
Q 012080 425 ESEVGNVVRRNHAKWKGTLVSP--GFVSGYIDKFVQNMR 461 (471)
Q Consensus 425 ~~~~~~~~~~~a~~l~~~~~~~--~~~~~~i~~~~~~~~ 461 (471)
. +..+.+| ++|++.+.+. ....+.+.++.+.+.
T Consensus 431 ~-~~l~~lR---~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 431 P-ERLRALR---AKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp H-HHHHHHH---HHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred H-HHHHHHH---HHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 4 2222333 3344433333 233344555554443
No 118
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.67 E-value=0.00093 Score=66.95 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=74.6
Q ss_pred CCcEEeccccCchh---hhcccCcceeec--c-------CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceE
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVS--H-------CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAV 399 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~It--H-------gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 399 (471)
.+++.+.+|+|+.+ ++..+++ ||. + =|. ++++||+++|+|+|+.... .....++ +-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~-~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVE-ADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhhc-CCCceE
Confidence 46788999999754 6778888 664 2 344 5789999999999997543 3444555 556788
Q ss_pred EeecccCCcccHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 400 EVEREENGWFSKESLCKAIKCVMD-KESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
.++. -+.+++.++|.++++ |+ +..+.+.+++++..+ +.=.....++.+.+.+.
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~-~~~~~~~~~ar~~v~---~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDT-DELAPVVKRAREKVE---TDFNQQVINRELASLLQ 404 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHh
Confidence 8875 578899999999998 75 344455555544332 22223344444544443
No 119
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.67 E-value=0.031 Score=57.42 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=75.2
Q ss_pred CCcEEeccccCchhhhcccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecc-cCC
Q 012080 333 GRGVVCGEWVEQMPILEHSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVERE-ENG 407 (471)
Q Consensus 333 ~~nv~~~~~~pq~~lL~~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~-~~~ 407 (471)
.++|.+.++.+..++++.+++ ||. .=|+ .+++||+++|+|+|+.-.. ..+...++ .-..|..++.. +..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~-~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIE-DNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHcc-CCCCEEEEeCCcccc
Confidence 356788888888889999998 664 3344 6999999999999997542 12444555 55568877731 000
Q ss_pred c-cc-HHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 408 W-FS-KESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 408 ~-~t-~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
. -+ .+.|+++|.+++.+ +..+.|.++|.+.++.+. ....++.+.+.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~--~~~~~~~~~a~~~a~~fs----~~~v~~~w~~ll~ 498 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNS--NDIDAFHEYSYQIAEGFL----TANIIEKWKKLVR 498 (500)
T ss_pred chhHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHh
Confidence 0 11 77899999999953 345667777776554432 2334444544443
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.55 E-value=0.0014 Score=65.64 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCcEEeccccCchh---hhcccCcceeeccC---C-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 333 GRGVVCGEWVEQMP---ILEHSSVGCFVSHC---G-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 333 ~~nv~~~~~~pq~~---lL~~~~v~~~ItHg---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
..++.+.+|+++.+ ++..+++.+||... | -++++||+++|+|+|+-. .......+. +-+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~-~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVD-NGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhc-CCCcEEEeCCC-
Confidence 45688889999765 44444444476543 2 368999999999999854 334556666 66688887742
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
-+.+++.++|.++++|+ +..+.+.++|++.-+
T Consensus 362 ---~~~~~la~~I~~ll~~~-~~~~~m~~~ar~~~~ 393 (407)
T cd04946 362 ---PTPNELVSSLSKFIDNE-EEYQTMREKAREKWE 393 (407)
T ss_pred ---CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH
Confidence 47899999999999875 455566666665543
No 121
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.55 E-value=0.01 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=24.6
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 24 AVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 24 ~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
..|+-..+..+++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 67999999999999999999999988
No 122
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0014 Score=52.75 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=68.5
Q ss_pred EEEEeCccccCCHHHH--HHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEecccc--Cc-hhhhccc
Q 012080 277 VYCAFGSQIILEKKQF--QELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWV--EQ-MPILEHS 351 (471)
Q Consensus 277 V~vs~Gs~~~~~~~~~--~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~--pq-~~lL~~~ 351 (471)
+||+-||....-...+ .++..-.+.-..++++.++.+ +..| + .++.+.+|. +- ..+..++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-------d~kp--v------agl~v~~F~~~~kiQsli~da 66 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-------DIKP--V------AGLRVYGFDKEEKIQSLIHDA 66 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-------Cccc--c------cccEEEeechHHHHHHHhhcc
Confidence 6889999843111111 112222223345788888853 1122 0 123443333 32 4577778
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEecccc--------ccchhhHHHHHHhhcceEEeec
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHL--------GDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~--------~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
++ +|+|+|.||++.++..++|.|++|-- ..|-.-|..+. +.+.=+....
T Consensus 67 rI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp 123 (161)
T COG5017 67 RI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP 123 (161)
T ss_pred eE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC
Confidence 87 99999999999999999999999942 24666777788 7766665554
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.35 E-value=0.00068 Score=56.30 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCcEEeccccCc-hhhhcccCcceeecc--CC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCc
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVSH--CG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGW 408 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~ItH--gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 408 (471)
.+|+.+.+|++. .++++.+++.+..+. -| -+++.|++++|+|+|+.+. ......+ ..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~-~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVE-EDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhee-ecCCeEEE-C-----
Confidence 358899889864 468889999666542 23 3899999999999999876 1233344 56778777 3
Q ss_pred ccHHHHHHHHHHHhcc
Q 012080 409 FSKESLCKAIKCVMDK 424 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~ 424 (471)
-+.+++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 5899999999999875
No 124
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.28 E-value=0.14 Score=52.53 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=48.2
Q ss_pred CCcEEeccccCc-hhhhcccCcceeec---cCC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 333 GRGVVCGEWVEQ-MPILEHSSVGCFVS---HCG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 333 ~~nv~~~~~~pq-~~lL~~~~v~~~It---HgG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
.++|.+.+|... ..+|..+++ ||. +-| .++++||+++|+|+|+... ..+...+. +-..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~-dG~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFI-EGVSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcc-cCCcEEEECC
Confidence 467888888654 457888998 775 345 4799999999999998764 35566666 6678888886
No 125
>PLN02939 transferase, transferring glycosyl groups
Probab=97.20 E-value=0.49 Score=51.51 Aligned_cols=84 Identities=11% Similarity=0.077 Sum_probs=54.6
Q ss_pred CCcEEeccccCch---hhhcccCcceeecc----CCcchHHHHHhhCCcEEeccccc--cchh--hHHHHHHhhcceEEe
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVSH----CGFGSMWESLMSDCQIVLVPHLG--DQIL--NTRLLAEELKVAVEV 401 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~Eal~~GvP~v~~P~~~--DQ~~--na~~v~~~~G~G~~l 401 (471)
..+|.+..+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |--. +...+.+.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3467777777754 47888888 7742 22358999999999999876533 2111 011111023568777
Q ss_pred ecccCCcccHHHHHHHHHHHhc
Q 012080 402 EREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
+. -+++.|.++|.+++.
T Consensus 914 ~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFN 930 (977)
T ss_pred cC-----CCHHHHHHHHHHHHH
Confidence 75 578889999988875
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.14 E-value=0.054 Score=52.31 Aligned_cols=106 Identities=10% Similarity=0.056 Sum_probs=66.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
|||++-....|++.-+.++.++|+++ +.+||+++.+.+...++... .++ ++.++.. .. . .
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p----~vd~v~~~~~~------~~-~--~---- 63 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHP----AVDEVIPVALR------RW-R--K---- 63 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCC----CccEEEEechh------hh-h--h----
Confidence 68999888999999999999999998 99999999998877665422 242 3444310 00 0 0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceE
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCI 141 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v 141 (471)
.++..........+...+++.+||++|.- .......++...+.+.+
T Consensus 64 ---~~~~~~~~~~~~~~~~~lr~~~yD~vi~~~~~~~s~~l~~~~~~~r~ 110 (319)
T TIGR02193 64 ---TLFSAATWREIKALRALLRAERYDAVIDAQGLIKSALVARMARGPRH 110 (319)
T ss_pred ---ccccchhHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHHhhCCcee
Confidence 00000011223345566777899998754 34445556666664433
No 127
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.10 E-value=0.0035 Score=61.07 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=80.2
Q ss_pred CCcEEeccccCchhhh---cccCcceeeccC-------Cc------chHHHHHhhCCcEEeccccccchhhHHHHHHhhc
Q 012080 333 GRGVVCGEWVEQMPIL---EHSSVGCFVSHC-------GF------GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELK 396 (471)
Q Consensus 333 ~~nv~~~~~~pq~~lL---~~~~v~~~ItHg-------G~------~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 396 (471)
.+||...+|+|+.++. .. +.+++...- .+ +-+.+.+++|+|+|+. ++...+..++ +-+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~-~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIV-ENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHH-hCC
Confidence 3578899999987654 33 443332211 11 1267789999999985 4567888888 999
Q ss_pred ceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 012080 397 VAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQ 458 (471)
Q Consensus 397 ~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~ 458 (471)
+|..++ +.+++.+++.++.. ++.+.|++|++++++.++..--..+++++++.
T Consensus 280 ~G~~v~-------~~~el~~~l~~~~~---~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVVD-------SLEELPEIIDNITE---EEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred ceEEeC-------CHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 999987 34578888888542 45668999999999999988777777777654
No 128
>PRK14099 glycogen synthase; Provisional
Probab=96.92 E-value=0.62 Score=47.84 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=30.3
Q ss_pred CCCeEEEecCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLPWF------AVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~~------~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.+||+|++.- +.|=-.-+-.|.++|+++||+|.++.|..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45799998542 22455557788999999999999999865
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.78 E-value=0.026 Score=46.96 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=65.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhH
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSI 95 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 95 (471)
||++++.....| ...+++.|.++||+|++++.......... ..++.++.++.+ .. ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~----~~~i~~~~~~~~-----------~k----~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI----IEGIKVIRLPSP-----------RK----SPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH----hCCeEEEEecCC-----------CC----ccH
Confidence 577776655555 55779999999999999999665322211 123777776421 00 011
Q ss_pred HHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Ccc---chHHHHHHcC-CceEEEec
Q 012080 96 NLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAY---WMATISKSLS-IKCIKYNV 145 (471)
Q Consensus 96 ~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~---~~~~~A~~~g-iP~v~~~~ 145 (471)
.++ . . ..+..++++.+||+|.+. ..+ .+..+++..+ +|++....
T Consensus 59 ~~~----~-~-~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYI----K-Y-FRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH----H-H-HHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 111 1 2 277899999999999888 533 2444667788 88885544
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.61 E-value=0.53 Score=44.03 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=72.3
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q 012080 25 VGHMTPFLHLSNKLAEKGHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAM 102 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
.-|+.-+..+.++|.++||+|.+-+-+. ..+.+..+| |.+..+.- .... .+...+.. .
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~yg-----f~~~~Igk----------~g~~----tl~~Kl~~-~ 69 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYG-----FPYKSIGK----------HGGV----TLKEKLLE-S 69 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhC-----CCeEeecc----------cCCc----cHHHHHHH-H
Confidence 4588899999999999999988777654 334556666 77777651 0001 11112212 2
Q ss_pred HHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 103 DRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 103 ~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
..+.-.|-+++.+.+||+.+.-.++....+|-.+|+|.+.+.-.
T Consensus 70 ~eR~~~L~ki~~~~kpdv~i~~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 70 AERVYKLSKIIAEFKPDVAIGKHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCcchhhHHhhcCCceEEecCC
Confidence 23455788899999999999966888899999999999988644
No 131
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.059 Score=54.26 Aligned_cols=135 Identities=11% Similarity=0.115 Sum_probs=89.6
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHh-hCCCcEEeccccCchhhh---
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAER-TKGRGVVCGEWVEQMPIL--- 348 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq~~lL--- 348 (471)
+..+||+||+......++.+..-++-++..+.-++|..+.+.+ ++....+-+-+... ...+.+++.+-.|..+-+
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~-~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~ 506 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD-AEINARLRDLAEREGVDSERLRFLPPAPNEDHRARY 506 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc-HHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhh
Confidence 4569999999999999999988888888888889998876522 22221121211111 234567777666655433
Q ss_pred cccCcceee---ccCCcchHHHHHhhCCcEEeccccccchhh---HHHHHHhhcceEEeecccCCcccHHHHHHHH
Q 012080 349 EHSSVGCFV---SHCGFGSMWESLMSDCQIVLVPHLGDQILN---TRLLAEELKVAVEVEREENGWFSKESLCKAI 418 (471)
Q Consensus 349 ~~~~v~~~I---tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~n---a~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai 418 (471)
.-+|+ |. --||.-|+.|+|..|||||.++ ++|+-- +..+. .+|+-..+-. -..+=|+++|
T Consensus 507 ~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~-~agi~e~vA~-----s~~dYV~~av 572 (620)
T COG3914 507 GIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIAT-NAGIPELVAD-----SRADYVEKAV 572 (620)
T ss_pred chhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHH-hcCCchhhcC-----CHHHHHHHHH
Confidence 34665 65 4799999999999999999998 787742 33355 6666555553 2233466666
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.16 E-value=0.33 Score=47.59 Aligned_cols=109 Identities=16% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 86 (471)
|+..+.+||++-....|++.-+.++.+.|+++ +.+|++++.+.+...++... .++ ++.++. ...
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----~id~vi~~~~------~~~--- 67 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP----EINALYGIKN------KKA--- 67 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC----CceEEEEecc------ccc---
Confidence 34567799999989999999999999999998 89999999998887664322 232 233320 000
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEE
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIK 142 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~ 142 (471)
.....+. ....+...|++.+||++|.- -......++...|.|..+
T Consensus 68 ------~~~~~~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 ------GASEKIK-----NFFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ------cHHHHHH-----HHHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000011 11234456777799998865 344455667777877654
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=96.05 E-value=0.21 Score=48.29 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=55.9
Q ss_pred CcEEec---cccCch---hhhcccCcceeecc---CC-cchHHHHHhhCCcEEeccc------cccc------hhhHHHH
Q 012080 334 RGVVCG---EWVEQM---PILEHSSVGCFVSH---CG-FGSMWESLMSDCQIVLVPH------LGDQ------ILNTRLL 391 (471)
Q Consensus 334 ~nv~~~---~~~pq~---~lL~~~~v~~~ItH---gG-~~s~~Eal~~GvP~v~~P~------~~DQ------~~na~~v 391 (471)
+++.+. +++++. ++++.+++ ||.- =| ..+++||+++|+|+|+--. .+|+ .++....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 466665 455543 56788888 7752 24 4689999999999998632 3443 3344333
Q ss_pred H-HhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 392 A-EELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 392 ~-~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
. ...|.|..++. .+++++.++|.+++..
T Consensus 279 ~~~~~g~g~~~~~-----~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 279 YDKEHGQKWKIHK-----FQIEDMANAIILAFEL 307 (335)
T ss_pred cCcccCceeeecC-----CCHHHHHHHHHHHHhc
Confidence 3 12466666665 7999999999999644
No 134
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.01 E-value=0.022 Score=48.20 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHH
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQ 108 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (471)
.-+..|+++|.++||+|+++++......-+.. ..++.+..++.+... . ...... ....
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~-----~~~~~~--------~~~~ 62 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE---EDGVRVHRLPLPRRP------W-----PLRLLR--------FLRR 62 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE---ETTEEEEEE--S-SS------S-----GGGHCC--------HHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc---cCCceEEeccCCccc------h-----hhhhHH--------HHHH
Confidence 34678999999999999999977655422110 123788777643111 0 000000 1123
Q ss_pred HHHHH--HhCCCcEEEEc-C-ccchHHHHH-HcCCceEEEec
Q 012080 109 VEAVI--KAAKPRLLFYD-I-AYWMATISK-SLSIKCIKYNV 145 (471)
Q Consensus 109 l~~~l--~~~~~Dlvi~D-~-~~~~~~~A~-~~giP~v~~~~ 145 (471)
+..++ ++.+||+|.+. . ......+++ ..++|++....
T Consensus 63 ~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 LRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 34444 67799999998 4 333334444 88999987654
No 135
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.77 E-value=0.78 Score=44.33 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=39.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQ 58 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~ 58 (471)
+|||++-..+.|++.-..++.+.|+++ +.+||+++.+.+....+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 489999999999999999999999997 89999999988776553
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.74 E-value=1 Score=43.94 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=68.7
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
|||++-....|++.-+.++.+.|+++ +.+|++++.+.+...++... .++ ++.++.. . . . .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----~vd~vi~~~~~--~------~--~---~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENP----DINALYGLDRK--K------A--K---A 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCC----CccEEEEeChh--h------h--c---c
Confidence 58999888999999999999999997 88999999998887665432 232 3333200 0 0 0 0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEE
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIK 142 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~ 142 (471)
.... .... -.+...|+..++|++|.- ....+..++...|.|..+
T Consensus 64 ~~~~-----~~~~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 64 GERK-----LANQ-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred hHHH-----HHHH-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0000 0011 123455677799998855 366677788888998654
No 137
>PHA01630 putative group 1 glycosyl transferase
Probab=95.72 E-value=0.12 Score=50.07 Aligned_cols=112 Identities=6% Similarity=-0.002 Sum_probs=60.4
Q ss_pred ccCch---hhhcccCcceee--cc-CC-cchHHHHHhhCCcEEeccccc--cch---hhHHHHHH----------hhcce
Q 012080 341 WVEQM---PILEHSSVGCFV--SH-CG-FGSMWESLMSDCQIVLVPHLG--DQI---LNTRLLAE----------ELKVA 398 (471)
Q Consensus 341 ~~pq~---~lL~~~~v~~~I--tH-gG-~~s~~Eal~~GvP~v~~P~~~--DQ~---~na~~v~~----------~~G~G 398 (471)
++|+. .+++.+++ || +. .| ..+++||+++|+|+|+.-..+ |.- .|+..+.. -.++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 36654 36788888 55 33 33 468999999999999976432 221 11111110 02345
Q ss_pred EEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 399 VEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 399 ~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
..++ .+.+++.+++.++|.|+. .+.++++...-+....+.-.-.+.++++.+.+.+
T Consensus 275 ~~v~------~~~~~~~~~ii~~l~~~~--~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 YFLD------PDIEDAYQKLLEALANWT--PEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccC------CCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4444 366778888888887620 0134433333333333333344445556555543
No 138
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.60 E-value=0.17 Score=51.49 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=79.2
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHH-----hhCCCcEEeccccCchh--
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAE-----RTKGRGVVCGEWVEQMP-- 346 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~nv~~~~~~pq~~-- 346 (471)
.-+||.+|--....+++.++..++-|+..+..++|.++-+..-+ .+|.. ...++.|++.+-++-.+
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge-------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE-------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch-------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 44999999888889999999988888888999999987431110 12221 12345566654443222
Q ss_pred ---hhcccCcceeeccCCcchHHHHHhhCCcEEeccccc-cchhhHHHHHHhhcceEEeec
Q 012080 347 ---ILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLG-DQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 347 ---lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~-DQ~~na~~v~~~~G~G~~l~~ 403 (471)
.|.+-.+.-+.+. |.-|.++.|+.|||||.+|.-. --.--+-.+. .+|+|-.+-+
T Consensus 831 rr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hliak 889 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLIAK 889 (966)
T ss_pred HhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHHhh
Confidence 2333223335554 7789999999999999999522 2233344566 8888886664
No 139
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.54 E-value=0.22 Score=49.92 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=91.1
Q ss_pred hhccCCCCCCcEEEEEeCccccC------CH----HHHHHHHHHHHhcCCceEEEeCCCCCCCc--cccc-CChhHHHhh
Q 012080 265 DKWLGGFERSSVVYCAFGSQIIL------EK----KQFQELLLGLELTGLCFLIALKPPTGAST--VEEA-FPDGFAERT 331 (471)
Q Consensus 265 ~~~l~~~~~~~vV~vs~Gs~~~~------~~----~~~~~~~~al~~~~~~~~~~~~~~~~~~~--~~~~-~p~~~~~~~ 331 (471)
..|+.....++.|-|+.-..... .. +.+.++++.+...++++++.--.. +... ..+. .-..+.+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~-~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCT-GIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEeccc-CccCCCCchHHHHHHHHHhc
Confidence 34554333345777776543311 11 233344555545588877664321 1100 0000 112233333
Q ss_pred CC-Cc--EEeccccCch--hhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE-eeccc
Q 012080 332 KG-RG--VVCGEWVEQM--PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVE-VEREE 405 (471)
Q Consensus 332 ~~-~n--v~~~~~~pq~--~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~ 405 (471)
.. .+ ++..++-|.. .+++++++ +|..= +=++.-|+..|||++.+++ |.-.... +. ++|.... ++.++
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~~~~-~~-~lg~~~~~~~~~~ 376 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EHKSAGI-MQ-QLGLPEMAIDIRH 376 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hHHHHHH-HH-HcCCccEEechhh
Confidence 32 22 2232233433 67888887 88632 2267788999999999997 4444433 47 8888866 55544
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHh
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKG 441 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~ 441 (471)
++.++|.+.+.+++.|..+-.+..+++..++++
T Consensus 377 ---l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~ 409 (426)
T PRK10017 377 ---LLDGSLQAMVADTLGQLPALNARLAEAVSRERQ 409 (426)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 899999999999998753333344444444444
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.95 E-value=3.3 Score=38.94 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=63.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
|||++-..+.|++.-+.++.++|+++. -+|++++.+.+...++... .++ ++.++.. + . ..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p----~id~v~~~~~~--~--------~---~~ 63 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP----EVDRVIVLPKK--H--------G---KL 63 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC----ccCEEEEcCCc--c--------c---cc
Confidence 689998889999999999999999984 8999999998887775432 132 2222200 0 0 00
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceE
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCI 141 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v 141 (471)
.. .....+...+++.++|+++.= .......++...+++..
T Consensus 64 ~~---------~~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 64 GL---------GARRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred ch---------HHHHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 00 011234444566689998876 44444445566666554
No 141
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.76 E-value=0.2 Score=44.46 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=63.6
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCC--CCCCCCCh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGA--ETASDVPM 92 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~ 92 (471)
||||+.-=-+. +---+..|+++|.+.||+|+++.+...+...-..-.....++......+ ..+.+. ......+.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~---~~~~~~~~~~v~GTPa 76 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPG---HDPGGVEAYAVSGTPA 76 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-T---TCCSTTEEEEESS-HH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEec---ccCCCCCEEEEcCcHH
Confidence 35666533322 4555788999998888999999999987655322222333555433200 001110 11122221
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecch
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~~ 147 (471)
+ ...-.+..++.+.+||+||+-+ +..|+.-|...|||.|.++...
T Consensus 77 D----------cv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 77 D----------CVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp H----------HHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred H----------HHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 1 1122344445555699999741 2334455667899999998653
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.76 E-value=2.4 Score=41.11 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=67.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
|||++-..+.|++.-..++.+.|++. +.+|++++.+.+...++... .++ ++.++. ...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----~id~v~~~~~------~~~--------- 61 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP----EIRQAIDMPL------GHG--------- 61 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc----hhceeeecCC------ccc---------
Confidence 68999999999999999999999988 89999999988776665422 122 222210 000
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceE
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCI 141 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v 141 (471)
...+ .....+...+++.++|++|.- -......++...|+|..
T Consensus 62 -~~~~------~~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 62 -ALEL------TERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred -chhh------hHHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0000 011244556777799998887 45556667777888764
No 143
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.50 E-value=0.23 Score=37.88 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=48.7
Q ss_pred cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 012080 359 HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 359 HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~ 438 (471)
+|-..-+.|++++|+|+|+-+. ..... -+.-|..+-.- -+.+++.++|..+++|+ + ..++-+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~----~~~~el~~~i~~ll~~~-~---~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY----NDPEELAEKIEYLLENP-E---ERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE----CCHHHHHHHHHHHHCCH-H---HHHHHHHH
Confidence 4455689999999999999864 22222 22222122210 27899999999999986 3 33444444
Q ss_pred HHhhhcCCCchhHHHHHHH
Q 012080 439 WKGTLVSPGFVSGYIDKFV 457 (471)
Q Consensus 439 l~~~~~~~~~~~~~i~~~~ 457 (471)
-.+.+++.-.-...++.|+
T Consensus 73 a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4444444434444444443
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.39 E-value=0.49 Score=40.45 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=54.0
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q 012080 23 FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAM 102 (471)
Q Consensus 23 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
...|=-.-+..|+++|+++||+|+++++......... . .......+ ... . ......+
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-~----~~~~~~~~------~~~-----~---~~~~~~~---- 66 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE-L----VKIFVKIP------YPI-----R---KRFLRSF---- 66 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST-E----EEE---TT-------SS-----T---SS--HHH----
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh-c----cceeeeee------ccc-----c---cccchhH----
Confidence 3456778899999999999999999987764432211 0 01111110 000 0 0011111
Q ss_pred HHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 103 DRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 103 ~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.....+...+++.+||+|-+. . ..+....+.. ++|.+.......
T Consensus 67 -~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 -FFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp -HHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred -HHHHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 123567777888899999555 4 3333333333 999998776654
No 145
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.37 E-value=0.082 Score=40.90 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=47.8
Q ss_pred CChhhhhhccCCCCCCcEEEEEeCccccC---CH--HHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCCh
Q 012080 259 PSEERWDKWLGGFERSSVVYCAFGSQIIL---EK--KQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPD 325 (471)
Q Consensus 259 ~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~ 325 (471)
+.+..+..|+...+.++-|.+|+||.... .. ..+..++++++..+..++..+... +.+.+. .+|+
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~-~~~~lg-~lP~ 94 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA-QRAELG-ELPD 94 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC-CCGGCC-S-TT
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH-HHHhhC-CCCC
Confidence 44566778998888899999999998863 22 467889999999999999998743 323332 2665
No 146
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.71 E-value=1 Score=45.75 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=67.6
Q ss_pred eccccCchh---hhcccCcceeec---cCCc-chHHHHHhhCCc----EEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 338 CGEWVEQMP---ILEHSSVGCFVS---HCGF-GSMWESLMSDCQ----IVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 338 ~~~~~pq~~---lL~~~~v~~~It---HgG~-~s~~Eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
+...+|+.+ ++..+++ |+. +=|+ .+..|++++|+| +|+--..+- +. .++-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~----~l~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ----ELNGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH----HhCCcEEECC---
Confidence 344556654 5677888 664 3465 588899999999 665554432 22 3345777876
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
.+.++++++|.++|+.+ .++.+++.+++.+.+.. .....-++.+++.+
T Consensus 407 --~d~~~lA~aI~~aL~~~---~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 --YDIDGMADAIARALTMP---LEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred --CCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 68899999999999854 12566666667776654 34444455555544
No 147
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.66 E-value=9.1 Score=37.18 Aligned_cols=104 Identities=15% Similarity=0.072 Sum_probs=70.2
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
+++|+++-....|++.-.+++-..|+++ +.++++++.+.+....+... .++-+..- .. .. ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~~vi~~----~~--~~----~~-- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EIDKVIII----DK--KK----KG-- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhhhhccc----cc--cc----cc--
Confidence 4689999888999999999999999999 59999999999887664422 12211110 00 00 00
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEE
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIK 142 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~ 142 (471)
........+...+++.++|+||.= -..-...++..+++|...
T Consensus 65 ---------~~~~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ---------LGLKERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ---------cchHHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 011123456667777799998876 466667777788887653
No 148
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=92.07 E-value=3.1 Score=41.93 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=80.2
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHHHh-cCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEe-ccccC-c-hhhh
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGLEL-TGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVC-GEWVE-Q-MPIL 348 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~-~~~~p-q-~~lL 348 (471)
+...+++| +...++.+....+. ++..|-+..+. . ..+.+..-...+|+++ .++.+ . .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t--e-------~s~kL~~L~~y~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT--E-------MSSKLMSLDKYDNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC--c-------ccHHHHHHHhcCCcEEECCcChHHHHHHH
Confidence 34577776 24555555555433 56777664432 1 1122222222356554 44667 3 5799
Q ss_pred cccCcceeeccCCc--chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 349 EHSSVGCFVSHCGF--GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 349 ~~~~v~~~ItHgG~--~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
..|++-+-|+||.. .++.||+.+|+|+++.=.. ..+...+. . |-.+.. -+.+++.++|.++|.++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t---~~~~~~i~-~---g~l~~~-----~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEET---AHNRDFIA-S---ENIFEH-----NEVDQLISKLKDLLNDP 412 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecc---cCCccccc-C---CceecC-----CCHHHHHHHHHHHhcCH
Confidence 99999999999875 8999999999999987643 22223333 3 555554 46788999999999886
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.17 E-value=0.92 Score=39.25 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=58.1
Q ss_pred CCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCch--hhhccCC-CCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHH
Q 012080 22 WFAVGHMTPFLHLSNKL-AEK-GHKITILLPRKAQ--TQLQHFN-LHPDLITLHPLTVPHVDGLPAGAETASDVPMSSIN 96 (471)
Q Consensus 22 ~~~~GH~~p~~~la~~L-~~r-Gh~Vt~~~~~~~~--~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 96 (471)
.++.||+.-|+.|.+.+ .++ .++..+++..+.. .+++++. .......+..+| ...... .....
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~--------r~r~v~----q~~~~ 72 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIP--------RAREVG----QSYLT 72 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccc--------eEEEec----hhhHh
Confidence 46689999999999999 333 4555555555432 2222211 000001233332 110101 11111
Q ss_pred HHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHc------CCceEEEecc
Q 012080 97 LLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSL------SIKCIKYNVV 146 (471)
Q Consensus 97 ~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~------giP~v~~~~~ 146 (471)
............+ .++...+||+||+. - +...+.+|..+ |.+.|.+-+.
T Consensus 73 ~~~~~l~~~~~~~-~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 73 SIFTTLRAFLQSL-RILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred hHHHHHHHHHHHH-HHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1111122222222 33455589999999 3 66667788888 8998877654
No 150
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.95 E-value=7.7 Score=36.62 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCcEEeccccC---chhhhcccCcceeecc---CCcc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 333 GRGVVCGEWVE---QMPILEHSSVGCFVSH---CGFG-SMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 333 ~~nv~~~~~~p---q~~lL~~~~v~~~ItH---gG~~-s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
..++...+++| ...++..+++ ++.- .|.| ++.|++++|+|+|.... ......+. .-+.|..+..
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~-~~~~g~~~~~-- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVE-DGETGLLVPP-- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhc-CCCceEecCC--
Confidence 36777788888 2346776776 5555 3554 46999999999976543 33333333 3334663332
Q ss_pred CCcccHHHHHHHHHHHhccC
Q 012080 406 NGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~ 425 (471)
...+++.+++..++++.
T Consensus 327 ---~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 ---GDVEELADALEQLLEDP 343 (381)
T ss_pred ---CCHHHHHHHHHHHhcCH
Confidence 25789999999999874
No 151
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=90.29 E-value=4.5 Score=38.23 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=78.7
Q ss_pred EEEEEeCccccCCHHHHHHHHHHH-H--hcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcE-EeccccC---chhhh
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGL-E--LTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGV-VCGEWVE---QMPIL 348 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al-~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv-~~~~~~p---q~~lL 348 (471)
.+-|=.|-.+..+. ...++++++ + ..+.++++-++.+.+.+...+.+-..-.+-.+.+++ .+++++| +.++|
T Consensus 146 ~~tIlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 146 KMTILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred ceEEEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 45555566544333 333334444 2 234567777766433322111111100111122343 3566776 56799
Q ss_pred cccCcceeecc--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 349 EHSSVGCFVSH--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 349 ~~~~v~~~ItH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
..|+++.|+|+ =|.|+++-.++.|+|+++-- +-+.|.. +. +.|+-+..+.+. ++...+.++=+++..
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~-e~gv~Vlf~~d~---L~~~~v~e~~rql~~ 293 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LT-EQGLPVLFTGDD---LDEDIVREAQRQLAS 293 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HH-hCCCeEEecCCc---ccHHHHHHHHHHHHh
Confidence 99999888886 48899999999999999874 3333333 44 556666555544 777777766555543
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.99 E-value=2.3 Score=38.99 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
|.-=+.+|++.|. .+++|++++++..+.-+...-.....++...+. .........+.+ -..
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~--------~~~~av~GTPaD----------CV~ 72 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVD--------NGAYAVNGTPAD----------CVI 72 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEec--------cceEEecCChHH----------HHH
Confidence 4455778889998 999999999999877553221222223333322 010111122222 123
Q ss_pred HHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecch
Q 012080 107 GQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~~ 147 (471)
-.+..++++.+||+||+-+ +..|+.=|..+|||.|.+|...
T Consensus 73 lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 73 LGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred HHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 3456677777799999731 2233444567999999988653
No 153
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.53 E-value=2.1 Score=36.29 Aligned_cols=104 Identities=17% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.+++|++--.|+.|-..-++.+++.|.++|+.|-=+.++.-++--...| |+.+++..-....+.. .......-
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~G-----F~Ivdl~tg~~~~la~--~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIG-----FKIVDLATGEEGILAR--VGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEee-----eEEEEccCCceEEEEE--cCCCCccc
Confidence 4569999999999999999999999999999987666666543333334 6666664110000000 01111000
Q ss_pred hhHHHHHHHHH-HhHHHHHHHHHhCCCcEEEEc-C
Q 012080 93 SSINLLVIAMD-RCRGQVEAVIKAAKPRLLFYD-I 125 (471)
Q Consensus 93 ~~~~~~~~~~~-~~~~~l~~~l~~~~~Dlvi~D-~ 125 (471)
.........++ ...+.++..++. .|+||.| +
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~--aDvIIIDEI 109 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEE--ADVIIIDEI 109 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhc--CCEEEEecc
Confidence 11111122222 344556666655 7999999 6
No 154
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.79 E-value=5 Score=37.15 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=62.6
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+++|||+.-=-+. |.--+..|+++|.+.| +|+++.+...+.-.-..-.....+++..+..+ .+. .. ......+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~--~~~-~~-y~v~GTPa 77 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKN--NRF-FG-YTVSGTPV 77 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccC--CCc-eE-EEEcCcHH
Confidence 4468776532211 4445788899998888 79999999877655332222333555554310 000 00 01112222
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
+. . .-.+..++ ..+||+||+-+ +..|+.-|..+|||.|.+|..
T Consensus 78 DC-------V---~lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~~ 134 (257)
T PRK13932 78 DC-------I---KVALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSLT 134 (257)
T ss_pred HH-------H---HHHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEcc
Confidence 21 1 11122233 24799999742 233444556799999998853
No 155
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=87.93 E-value=6.3 Score=37.88 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=82.7
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHH---hcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEE-eccccC---chhh
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLE---LTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVV-CGEWVE---QMPI 347 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~p---q~~l 347 (471)
+.+.|=.|-.+..+...+. .++++. ..+.++++-++.+.+.+...+.+-+.-.+..+..++. +.+++| +..+
T Consensus 184 ~~ltILvGNSgd~sNnHie-aL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~l 262 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIE-ALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLAL 262 (360)
T ss_pred CceEEEEcCCCCCCccHHH-HHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHH
Confidence 3555556665543332222 222232 2356777777655332221111111111112234554 466887 4568
Q ss_pred hcccCcceeecc--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 348 LEHSSVGCFVSH--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 348 L~~~~v~~~ItH--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
|..|++..|.+. =|.|+++-.|+.|+|+++-- +-+.+ +-+. +.|+=+....++ ++...|.++=+++..-
T Consensus 263 L~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~-~~l~-~~~ipVlf~~d~---L~~~~v~ea~rql~~~ 333 (360)
T PF07429_consen 263 LSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFW-QDLK-EQGIPVLFYGDE---LDEALVREAQRQLANV 333 (360)
T ss_pred HHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHH-HHHH-hCCCeEEecccc---CCHHHHHHHHHHHhhC
Confidence 899999877775 58999999999999999864 33333 3344 456655555444 9999999998888753
No 156
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=87.60 E-value=6.1 Score=36.52 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHH
Q 012080 31 FLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVE 110 (471)
Q Consensus 31 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (471)
+..|+++|++ +|+|+++.+...+.-....-.....++...+..+ +...........+.+... -.+.
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~---~~~~~~~~v~GTPaDcV~----------lal~ 81 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLE---GINSKAYSISGTPADCVR----------VALD 81 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCeEEEeeccC---CCCccEEEECCcHHHHHH----------HHHH
Confidence 7888999965 6899999999877644222122223444443210 000000011122222111 1122
Q ss_pred HHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
.++ ..+||+||+-+ +..|+.-|..+|||.+.+|..
T Consensus 82 ~l~-~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~~ 130 (253)
T PRK13933 82 KLV-PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSAD 130 (253)
T ss_pred Hhc-CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEec
Confidence 233 24799999741 233445566799999998863
No 157
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.34 E-value=0.63 Score=48.03 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=66.9
Q ss_pred CcEEeccccC--c-hhhhcccCcceeeccC---CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 334 RGVVCGEWVE--Q-MPILEHSSVGCFVSHC---GFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 334 ~nv~~~~~~p--q-~~lL~~~~v~~~ItHg---G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
..|.+.++.. + ..++.+.++ +|.=+ |.++..||+++|+|+| .+.....|+ .-.=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~-d~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVE-HNKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeE-cCCCcEEeC-----
Confidence 4567777776 3 357777777 77654 7789999999999999 444455566 666676663
Q ss_pred cccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhh
Q 012080 408 WFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
+..+|.++|..+|.+. +.++.+...|-+.++..
T Consensus 474 --d~~~l~~al~~~L~~~-~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNL-KNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHh
Confidence 5677999999999984 66667777776666554
No 158
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.94 E-value=2.8 Score=39.21 Aligned_cols=83 Identities=11% Similarity=0.051 Sum_probs=50.1
Q ss_pred CchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHH--hhcceEEeecccCCcccHHHHHHHHHH
Q 012080 343 EQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAE--ELKVAVEVEREENGWFSKESLCKAIKC 420 (471)
Q Consensus 343 pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~--~~G~G~~l~~~~~~~~t~~~l~~ai~~ 420 (471)
-..++|+++++ .|--.|- .+-+++-.|+|+|.+|-.+-|+.-...... -+|+.+.+-. -.+..-..+.++
T Consensus 304 sfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~aq~a~~~~q~ 375 (412)
T COG4370 304 SFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PEAQAAAQAVQE 375 (412)
T ss_pred HHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----CchhhHHHHHHH
Confidence 34556666665 4433322 233467789999999999999876655431 3455555553 222223334445
Q ss_pred HhccCchhhHHHHHHHHH
Q 012080 421 VMDKESEVGNVVRRNHAK 438 (471)
Q Consensus 421 ll~~~~~~~~~~~~~a~~ 438 (471)
+|.|+ .+.++++.
T Consensus 376 ll~dp-----~r~~air~ 388 (412)
T COG4370 376 LLGDP-----QRLTAIRH 388 (412)
T ss_pred HhcCh-----HHHHHHHh
Confidence 99998 77766653
No 159
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=86.92 E-value=9.2 Score=37.64 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+..-||+---|+.|--.=+++++..|+++| +|.+++.+....+++- +...+.. +.. +
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qikl--------RA~RL~~------~~~-----~--- 148 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKL--------RADRLGL------PTN-----N--- 148 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH--------HHHHhCC------Ccc-----c---
Confidence 344566667799999999999999999999 9999999998776621 1111110 000 0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccch--------------------HHHHHHcCCceEEEecc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWM--------------------ATISKSLSIKCIKYNVV 146 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~--------------------~~~A~~~giP~v~~~~~ 146 (471)
+.-..+...+.+.+.+++.+||++|.| + ..+. ..+|+..+|+.+++...
T Consensus 149 -----l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV 219 (456)
T COG1066 149 -----LYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV 219 (456)
T ss_pred -----eEEehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence 000122345667778888999999999 6 4443 23677888988766543
No 160
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.83 E-value=3.4 Score=39.73 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCeEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh
Q 012080 14 AFPIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ 56 (471)
Q Consensus 14 ~~~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 56 (471)
+.||+|++. ||.|-..-..++|-.|++.|.+|.+++++.....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 358888876 8889999999999999999998888888876543
No 161
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=86.55 E-value=1.3 Score=45.23 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=49.0
Q ss_pred eccccCchh---hhcccCcceeec---cCCc-chHHHHHhhCCc---EEeccccccchhhHHHHHHhhcceEEeecccCC
Q 012080 338 CGEWVEQMP---ILEHSSVGCFVS---HCGF-GSMWESLMSDCQ---IVLVPHLGDQILNTRLLAEELKVAVEVEREENG 407 (471)
Q Consensus 338 ~~~~~pq~~---lL~~~~v~~~It---HgG~-~s~~Eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 407 (471)
+.+++++.+ ++..+++ ||. +-|+ .+++||+++|+| +|++.-+.- ..+ ...-|..++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G------~~~-~~~~g~lv~p---- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG------AAE-ELSGALLVNP---- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc------chh-hcCCCEEECC----
Confidence 445777654 5778888 663 3455 578999999999 344332211 111 2234677776
Q ss_pred cccHHHHHHHHHHHhccC
Q 012080 408 WFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 408 ~~t~~~l~~ai~~ll~~~ 425 (471)
-+.+++.++|.++++++
T Consensus 412 -~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 -YDIDEVADAIHRALTMP 428 (460)
T ss_pred -CCHHHHHHHHHHHHcCC
Confidence 67889999999999875
No 162
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=86.23 E-value=1.7 Score=41.62 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=34.9
Q ss_pred eEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
|++|+.. |+.|-..-..++|-.++++|++|.+++++.....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~ 44 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLS 44 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHH
Confidence 6677654 88899999999999999999999999999876543
No 163
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=86.19 E-value=14 Score=31.89 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=48.5
Q ss_pred hCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCC-CCCCCChhhHHHHHHHHHHhHHHHHHHHH-hCC
Q 012080 40 EKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAE-TASDVPMSSINLLVIAMDRCRGQVEAVIK-AAK 117 (471)
Q Consensus 40 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~ 117 (471)
++||+|++++........ .+++...+..+ .... ........+...... -+...+.+.++-+ ...
T Consensus 1 q~gh~v~fl~~~~~~~~~-------~GV~~~~y~~~------~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~Gf~ 66 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-------PGVRVVRYRPP------RGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQGFV 66 (171)
T ss_pred CCCCEEEEEecCCCCCCC-------CCcEEEEeCCC------CCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHcCCC
Confidence 479999999955543322 23777666421 1101 011011111111111 1122333444433 347
Q ss_pred CcEEEEc-CccchHHHHHHc-CCceEEEec
Q 012080 118 PRLLFYD-IAYWMATISKSL-SIKCIKYNV 145 (471)
Q Consensus 118 ~Dlvi~D-~~~~~~~~A~~~-giP~v~~~~ 145 (471)
||+||.. -+=.++.+-+.+ +.|.+.+.=
T Consensus 67 PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 67 PDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred CCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 8999999 566677788888 788887653
No 164
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=16 Score=35.05 Aligned_cols=127 Identities=13% Similarity=0.010 Sum_probs=79.7
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
.++.|++++-.|..||--+|.--|..|++.|.+|++++--......+-+. .++++++.++-+ +. .+..
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~--hprI~ih~m~~l-----~~-----~~~~ 77 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLN--HPRIRIHGMPNL-----PF-----LQGG 77 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhc--CCceEEEeCCCC-----cc-----cCCC
Confidence 45678999999999999999999999999999999998766543332222 346999988622 21 1111
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHH----HHcCCceEEEecchhHH
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATIS----KSLSIKCIKYNVVCAAS 150 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A----~~~giP~v~~~~~~~~~ 150 (471)
.....+...++-+...-+.++....++|+|+.- - ......++ ...|..+++=+....+.
T Consensus 78 p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 111122223333344445555556688998887 2 33333333 34567777767665554
No 165
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=84.58 E-value=3.9 Score=42.32 Aligned_cols=78 Identities=10% Similarity=-0.074 Sum_probs=47.0
Q ss_pred chhhhcccCcceeec-cCCc-chHHHHHhhCCcEEeccccc-cchhhHHHHHHhh--cceEEeecccCC--cccHHHHHH
Q 012080 344 QMPILEHSSVGCFVS-HCGF-GSMWESLMSDCQIVLVPHLG-DQILNTRLLAEEL--KVAVEVEREENG--WFSKESLCK 416 (471)
Q Consensus 344 q~~lL~~~~v~~~It-HgG~-~s~~Eal~~GvP~v~~P~~~-DQ~~na~~v~~~~--G~G~~l~~~~~~--~~t~~~l~~ 416 (471)
..+++..|++.++=+ +=|+ -+.+||+++|+|+|+....+ .. ...-+. .. ..|+.+...+.. .-+.++|.+
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~--~v~E~v-~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGC--FMEEHI-EDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhh--hhHHHh-ccCCCceEEEecCCccchHHHHHHHHH
Confidence 456677788833322 4454 59999999999999987532 11 112222 11 257777631111 135677888
Q ss_pred HHHHHhcc
Q 012080 417 AIKCVMDK 424 (471)
Q Consensus 417 ai~~ll~~ 424 (471)
+|.+++..
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 88888854
No 166
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=83.07 E-value=9.1 Score=37.36 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=68.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCeEE-EEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLITL-HPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
+|||++-..+.|++.-..++.+.|+++ +.+|++++.+.+...++... .++- +.++. ... .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----~vd~vi~~~~------~~~-------~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP----EVNEAIPMPL------GHG-------A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC----ccCEEEeccc------ccc-------h
Confidence 379999999999999999999999997 89999999988877665432 2332 22210 000 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEE
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIK 142 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~ 142 (471)
.. +. ....+...|++.+||++|.= -..-...++...|+|...
T Consensus 64 ~~----~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LE----IG-----ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hh----hH-----HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 00 11234456777899998766 455566777888888653
No 167
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=82.79 E-value=14 Score=29.55 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=32.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.++++.+.+..-|-.-+..+|..|.++||+|.++....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 37888899999999999999999999999999885544
No 168
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=81.60 E-value=18 Score=32.25 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=57.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCc----hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKA----QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
|+||+++..+..+= +.++.+.+.+.+ ++|.++.+... ....+..| +.+..++.. ..
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~g-----Ip~~~~~~~---~~------- 62 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAG-----IPTFVLDHK---DF------- 62 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcC-----CCEEEECcc---cc-------
Confidence 47899998775333 346666676664 77877655532 12223333 666554310 00
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecc
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.+ .......+.+.+++.+||++|+- + ......+-+....-++.++++
T Consensus 63 ~~------------~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiHps 111 (200)
T PRK05647 63 PS------------REAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIHPS 111 (200)
T ss_pred Cc------------hhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEeCc
Confidence 00 11123456677888899999887 5 444444445444445666554
No 169
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=81.48 E-value=14 Score=34.04 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
|.--+..|+++|.+. |+|+++.+...+.-+...-.....+++..+. ++ .......+.+...
T Consensus 12 ~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~----~~----~~~v~GTPaDcV~---------- 72 (250)
T PRK00346 12 HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVD----NG----FYAVDGTPTDCVH---------- 72 (250)
T ss_pred CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEec----CC----eEEECCcHHHHHH----------
Confidence 444478899999988 7999999998776553322222335555442 11 1111222222111
Q ss_pred HHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
-.+..++. .+||+||+-+ +..|+.-|...|||.+.+|..
T Consensus 73 ~gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 73 LALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred HHHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 11222332 3799999742 233444556799999998863
No 170
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=80.20 E-value=16 Score=34.01 Aligned_cols=90 Identities=12% Similarity=0.209 Sum_probs=54.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh-hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT-QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+|+++.. .|. -..||+.|.++||+|+..+...... .....+ ...++ .. .+
T Consensus 2 ~ILvlGG--T~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g----~~~v~-~g-----~l-------------- 52 (256)
T TIGR00715 2 TVLLMGG--TVD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ----ALTVH-TG-----AL-------------- 52 (256)
T ss_pred eEEEEec--hHH---HHHHHHHHHhCCCeEEEEEccCCccccccccC----CceEE-EC-----CC--------------
Confidence 5666543 232 6789999999999998877666432 222211 01111 10 00
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccch-------HHHHHHcCCceEEEe
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWM-------ATISKSLSIKCIKYN 144 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~-------~~~A~~~giP~v~~~ 144 (471)
-...+.+++++.++|+||--..+.+ ..+|+.+|||++.+.
T Consensus 53 ----------~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 53 ----------DPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred ----------CHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0124667788889997664433333 447789999999874
No 171
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=79.73 E-value=20 Score=33.28 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhC---CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHH
Q 012080 27 HMTPFLHLSNKLAEK---GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMD 103 (471)
Q Consensus 27 H~~p~~~la~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (471)
|.-=+.+|++.|.+. |++|+++.++..+.-....-.....++...+. ++ .......+.+...
T Consensus 12 ~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~----~~----~yav~GTPaDCV~------- 76 (261)
T PRK13931 12 NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELG----PR----RFAAEGSPADCVL------- 76 (261)
T ss_pred CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeC----CC----eEEEcCchHHHHH-------
Confidence 333456677777653 47999999998776553322223335555542 11 1112222322111
Q ss_pred HhHHHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEec
Q 012080 104 RCRGQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 104 ~~~~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~ 145 (471)
-.+..++...+||+||+-+ +..|+.-|..+|||.+.+|.
T Consensus 77 ---lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 77 ---AALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred ---HHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1122333335799999742 22334455679999999986
No 172
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=79.51 E-value=21 Score=32.81 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
|.--+..|+++|++.| +|+++.+...+..+...-.....+++..+... ++. ........+.+...
T Consensus 12 ~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~--~~~--~~~~v~GTPaDcv~---------- 76 (244)
T TIGR00087 12 HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVK--NGA--HIYAVDGTPTDCVI---------- 76 (244)
T ss_pred CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccC--CCc--cEEEEcCcHHHHHH----------
Confidence 4445788899999988 89999999887765332223334666554310 000 00111222222111
Q ss_pred HHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
-.+..++ ..+||+||+-+ +..|+.-|..+|||.+.+|..
T Consensus 77 ~gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 77 LGINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred HHHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 1122223 23699998742 233444556789999998853
No 173
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.08 E-value=5.2 Score=33.21 Aligned_cols=45 Identities=20% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
++.+|++.+.++-+|-.-..-++..|..+|++|++++.....+.+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 567899999999999999999999999999999999987654433
No 174
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=79.06 E-value=17 Score=33.67 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
|---+.+|+++|.+ +|+|+++.+...+.-.-..-.....++...+... ++. .. ......+.+...
T Consensus 12 ~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~--~~~-~~-y~v~GTPaDcV~---------- 76 (253)
T PRK13935 12 TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITIRVPLWAKKVFIS--ERF-VA-YATTGTPADCVK---------- 76 (253)
T ss_pred CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccCCCCceEEEeecC--CCc-cE-EEECCcHHHHHH----------
Confidence 34447788899965 6899999999877655322122223444443210 000 00 111222222111
Q ss_pred HHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
-.+..++ ..+||+||+-+ +..|+.-|..+|||.+.+|..
T Consensus 77 lal~~~~-~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 129 (253)
T PRK13935 77 LGYDVIM-DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISSA 129 (253)
T ss_pred HHHHhhc-cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEcc
Confidence 1112223 23799999731 233344556789999999863
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=77.27 E-value=4 Score=32.76 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=33.7
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+|++.+.++-.|.....-++..|.++|++|+++.....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~ 38 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVP 38 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 57888999999999999999999999999988876543
No 176
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=77.00 E-value=37 Score=32.12 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
.+...|.+--.|+.|--.-.=.|...|.++||+|-++.-++...+--.. ...+.++...+... ++ ......+
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs-iLGDRiRM~~~~~~------~~-vFiRs~~ 120 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS-ILGDRIRMQRLAVD------PG-VFIRSSP 120 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc-ccccHhhHHhhccC------CC-eEEeecC
Confidence 4555677778899999999999999999999999999888765433211 11122333222100 00 0000000
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceE
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCI 141 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v 141 (471)
. ...+.. ..........+++...+|+||++ . --.-..++....+-.+
T Consensus 121 s--rG~lGG-lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~ 170 (323)
T COG1703 121 S--RGTLGG-LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLV 170 (323)
T ss_pred C--Cccchh-hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEE
Confidence 0 000111 22345567788899999999999 4 3334455555555433
No 177
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=75.72 E-value=21 Score=33.06 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=32.3
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|+++ .-++.|...-...+|..++++|++|.++..+...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 4555 5688899999999999999999999999887743
No 178
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=74.79 E-value=12 Score=32.89 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=49.3
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch-hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ-TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.++-+--.+.|-++-+.+|+++|.++ |+.|.+-++...- +.+++. .+..+....+|++
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~--~~~~v~~~~~P~D----------------- 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL--LPDRVDVQYLPLD----------------- 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG---GGG-SEEE---S-----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh--CCCCeEEEEeCcc-----------------
Confidence 34444456689999999999999988 8888777664332 223221 1112333334421
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---CccchHHHHHHcCCceEEEec
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---IAYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~~~~~~~~A~~~giP~v~~~~ 145 (471)
....+..+++.++||++|.- +.+.-...|++.|||.+.+..
T Consensus 83 ------------~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ------------FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------------SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ------------CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 11234556777789996665 466556677889999997754
No 179
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=73.98 E-value=12 Score=32.16 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEcC-ccchHHHH--HH---c-CCceEEEecc
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYDI-AYWMATIS--KS---L-SIKCIKYNVV 146 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D~-~~~~~~~A--~~---~-giP~v~~~~~ 146 (471)
.....+.+.++|++.+||+||+.+ .+.+..++ ++ + ++|.+.+.+-
T Consensus 74 ~~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 74 SRLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 344556899999999999999994 43333122 22 3 4777766543
No 180
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.71 E-value=28 Score=31.22 Aligned_cols=91 Identities=9% Similarity=0.095 Sum_probs=57.5
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc-hhhhccCCC--C-------CCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 21 PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA-QTQLQHFNL--H-------PDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 21 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~-~~~~~~~~~--~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
---+.|--.-+..++..+...||+|++++++.. ++++.++.. + ...+.|.++.+. ..
T Consensus 35 Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~---~~---------- 101 (235)
T COG2874 35 GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLE---PV---------- 101 (235)
T ss_pred CCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccc---cc----------
Confidence 446678999999999999999999999999964 333333211 1 123455554311 00
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccch
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWM 129 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~ 129 (471)
.+.....+...+.+.+.++..+.|+||.| +++.+
T Consensus 102 -----~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 102 -----NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred -----ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHh
Confidence 01122234455666677777789999999 76544
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=73.50 E-value=57 Score=27.81 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=56.5
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE---eCC-Cc--hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITIL---LPR-KA--QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~---~~~-~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
-|.+++..+.|-....+.+|-..+.+|++|.++ -.. .. ...++.. + ++++..... +.. .. .+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l---~-~v~~~~~g~----~~~--~~--~~ 71 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL---P-NIEIHRMGR----GFF--WT--TE 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC---C-CcEEEECCC----CCc--cC--CC
Confidence 467788889999999999999999999999984 232 11 1112222 1 466665441 100 00 01
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA 126 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~ 126 (471)
... -.....+.......+.++..++|+||.| +.
T Consensus 72 ~~~----~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~ 105 (159)
T cd00561 72 NDE----EDIAAAAEGWAFAKEAIASGEYDLVILDEIN 105 (159)
T ss_pred ChH----HHHHHHHHHHHHHHHHHhcCCCCEEEEechH
Confidence 011 1112233445566677777799999999 64
No 182
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=72.87 E-value=21 Score=33.26 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEe
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPL 72 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (471)
|.--+..|++.|.+.| +|+++.+...+.-.-..-.....++...+
T Consensus 12 ~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~ 56 (266)
T PRK13934 12 HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITLHKPLRMYEV 56 (266)
T ss_pred CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccCCCCcEEEEe
Confidence 4455788999998887 79999999877655322222233555444
No 183
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=72.81 E-value=5.7 Score=32.01 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=26.2
Q ss_pred CeEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 15 FPIVMLPWFAVG---HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 15 ~~il~~~~~~~G---H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+||+|+.-|-.+ .-.-.++|+.+-++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 478887554332 345678999999999999999988764
No 184
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=72.70 E-value=4.2 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.167 Sum_probs=34.5
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
||++...++.+=.. ...+.++|.++|++|.++.++.....+..
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 77777666655555 99999999999999999999988776644
No 185
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=71.41 E-value=68 Score=28.28 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=61.6
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch------hhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ------TQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
+.-.|.+++..+.|-....+.+|-..+.+|++|.++-.-... ..++.. .++++...+. +.. ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~----~~~--~~- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGT----GFT--WE- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCC----CCc--cc-
Confidence 346788999999999999999999999999999987533211 111211 1477766541 110 00
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA 126 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~ 126 (471)
..... -.............+.+.+.++|+||-| +.
T Consensus 90 -~~~~~----e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~ 125 (191)
T PRK05986 90 -TQDRE----RDIAAAREGWEEAKRMLADESYDLVVLDELT 125 (191)
T ss_pred -CCCcH----HHHHHHHHHHHHHHHHHhCCCCCEEEEehhh
Confidence 01111 1122244455666777778899999999 64
No 186
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=71.18 E-value=12 Score=41.15 Aligned_cols=99 Identities=12% Similarity=0.201 Sum_probs=63.1
Q ss_pred hhhcccCcceeec---cCCcc-hHHHHHhhCCc---EEeccccccchhhHHHHHHhhc-ceEEeecccCCcccHHHHHHH
Q 012080 346 PILEHSSVGCFVS---HCGFG-SMWESLMSDCQ---IVLVPHLGDQILNTRLLAEELK-VAVEVEREENGWFSKESLCKA 417 (471)
Q Consensus 346 ~lL~~~~v~~~It---HgG~~-s~~Eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~t~~~l~~a 417 (471)
+++..+++ ||. .=|+| +.+|++++|+| +++++-+. ..+. .+| -|+.+++ .+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP-----~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNP-----WNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECC-----CCHHHHHHH
Confidence 56777888 664 34775 77899999999 55555322 2222 334 5788887 788999999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 418 IKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 418 i~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
|.++|+.+. ++.+++.+++.+.+.... ...-++.+++.+.+
T Consensus 437 I~~aL~m~~---~er~~r~~~~~~~v~~~~-~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 437 IKEALNMSD---EERETRHRHNFQYVKTHS-AQKWADDFMSELND 477 (797)
T ss_pred HHHHHhCCH---HHHHHHHHHHHHhhhhCC-HHHHHHHHHHHHHH
Confidence 999998331 134455566666655543 33445556555543
No 187
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.08 E-value=76 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=31.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+-|++--+|+.|-......||++|.+++|+|.-++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 34555677999999999999999999999987776654
No 188
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=70.57 E-value=40 Score=29.83 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=31.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|+|+-..+.|-..-...||..++.+|.+|.+++.+.++
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 55666677899999999999999999999999999875
No 189
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=70.09 E-value=35 Score=31.33 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=30.6
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
..|++. +-||.|-..-..+||..|++.|++|..+=-+
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 456666 5588999999999999999999998887444
No 190
>PRK06849 hypothetical protein; Provisional
Probab=69.29 E-value=33 Score=34.00 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=28.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++.+||+.. |...-.+.+|+.|.++||+|+++.....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 456777763 2233689999999999999999877653
No 191
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=68.96 E-value=30 Score=29.46 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=58.3
Q ss_pred EEEecCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCC---chhh----hccCCCCCCCe-EEEEecCCCCCCCCCC
Q 012080 17 IVMLPWFAVGHMTP----FLHLSNKLAEK-GHKITILLPRK---AQTQ----LQHFNLHPDLI-TLHPLTVPHVDGLPAG 83 (471)
Q Consensus 17 il~~~~~~~GH~~p----~~~la~~L~~r-Gh~Vt~~~~~~---~~~~----~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 83 (471)
|+++.-...|.+++ ++..|++|++. |.+|+.++... ..+. +..+| + +.+.+..+
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G-----~d~v~~~~~~-------- 68 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYG-----ADKVYHIDDP-------- 68 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTT-----ESEEEEEE-G--------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcC-----CcEEEEecCc--------
Confidence 45553333555554 78889999876 77877765543 2222 12234 3 23333311
Q ss_pred CCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC----ccchHHHHHHcCCceEEEecc
Q 012080 84 AETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI----AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~----~~~~~~~A~~~giP~v~~~~~ 146 (471)
..... ..+.....+.+++++.+||+|+.-. .-.+..+|.+++.|++.-...
T Consensus 69 --~~~~~----------~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 69 --ALAEY----------DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp --GGTTC-----------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred --ccccc----------CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 00000 1233455677788888999999872 345566889999999876553
No 192
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.90 E-value=10 Score=41.21 Aligned_cols=112 Identities=18% Similarity=0.071 Sum_probs=66.9
Q ss_pred EeccccCchh---hhcccCcceeecc---CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcc
Q 012080 337 VCGEWVEQMP---ILEHSSVGCFVSH---CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWF 409 (471)
Q Consensus 337 ~~~~~~pq~~---lL~~~~v~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 409 (471)
++.+++++.+ ++..+++ |+.- -|+ .+..|++++|+|-...|+..+--.-+. ++.-|+.+++ .
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~----~l~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA----ELAEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH----HhCcCeEECC-----C
Confidence 4556777664 6667887 6643 354 588999999775222222222111122 2233778877 6
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 410 SKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
+.++++++|.++|+.+.+ +.+++.+++.+.+. .-....-++.+++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~~---e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE---EQRERMQAMQERLR-RYDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence 889999999999985411 34455555555553 334555666676666554
No 193
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=68.65 E-value=9.7 Score=28.11 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=28.5
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
.-++++..+...|...+..+|+.|.++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567777777789999999999999999997654
No 194
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=68.45 E-value=16 Score=34.11 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=34.0
Q ss_pred EEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc
Q 012080 336 VVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH 380 (471)
Q Consensus 336 v~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~ 380 (471)
+++.+-++-.+||.+++. +||-.+. .-+||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 445556778899999998 8887554 77899999999999863
No 195
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=67.91 E-value=73 Score=31.47 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=33.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++.-.++.|=..-++.+|..+.++|.+|.++..+.....+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 45556688999999999999999999999999887655443
No 196
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=67.71 E-value=72 Score=27.74 Aligned_cols=106 Identities=10% Similarity=0.073 Sum_probs=58.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCCchhhh-ccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHK--ITILLPRKAQTQL-QHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~--Vt~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
+||+|+..+.. ..+..+.++|.+++|+ +..+.+....... ..... ..+....+... . ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~--~~~~~~~~~~~---~----------~~ 62 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK--NGIPAQVADEK---N----------FQ 62 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH--TTHHEEEHHGG---G----------SS
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc--CCCCEEecccc---C----------CC
Confidence 47888865543 5567778899999997 5555544433221 11000 01222222200 0 00
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.......++.+.+++.+||++|+- + ......+-...+..++.++++.
T Consensus 63 ---------~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHpsl 111 (181)
T PF00551_consen 63 ---------PRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPSL 111 (181)
T ss_dssp ---------SHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESSS
T ss_pred ---------chHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeecC
Confidence 012335567888999999999887 5 5555566677777778877653
No 197
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=67.58 E-value=1.2e+02 Score=29.32 Aligned_cols=369 Identities=15% Similarity=0.077 Sum_probs=175.1
Q ss_pred CCCCeEEEe-c--CCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchh--hh-cc----C--CCCCCCeEEEEecCCCC
Q 012080 12 SSAFPIVML-P--WFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQT--QL-QH----F--NLHPDLITLHPLTVPHV 77 (471)
Q Consensus 12 ~~~~~il~~-~--~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~--~~-~~----~--~~~~~~~~~~~i~~~~~ 77 (471)
.+...+.|+ | ..+.|-=.-+-.-.+.+++. .|...+++.+.+.. .+ .+ . ...+.++.|+.+..-
T Consensus 41 k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R-- 118 (465)
T KOG1387|consen 41 KNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLR-- 118 (465)
T ss_pred hhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEee--
Confidence 344567775 3 34444444455556666655 56666666663321 11 11 1 133456777766421
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC-ccchHHHHH-HcCCceEEEecchhHHHHHhh
Q 012080 78 DGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI-AYWMATISK-SLSIKCIKYNVVCAASIATAL 155 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~-~~~~~~~A~-~~giP~v~~~~~~~~~~~~~~ 155 (471)
-+-+. ....-..++..+...+.-.++++++ ..||+.|-.+ .+....+.+ ..++|++.+..-|..+.-+..
T Consensus 119 -~lVea------~~~~hfTllgQaigsmIl~~Eai~r-~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~ 190 (465)
T KOG1387|consen 119 -YLVEA------STWKHFTLLGQAIGSMILAFEAIIR-FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLK 190 (465)
T ss_pred -eeeec------ccccceehHHHHHHHHHHHHHHHHh-CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHH
Confidence 11111 0111223445556666666676664 5789877665 555555555 688999888765543321111
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhh-ccCCEEEEcCccccchhHH
Q 012080 156 VPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSL-KESDAISIRTCHEIEGDLC 234 (471)
Q Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~~~ 234 (471)
-.. +.....+.. +..-..++++.+++... ..++.+.+|+... -
T Consensus 191 ~l~-----------------------------qrq~s~~l~--~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT-----~ 234 (465)
T KOG1387|consen 191 KLF-----------------------------QRQKSGILV--WGKLAYWRLFALLYQSAGSKADIVMTNSSWT-----N 234 (465)
T ss_pred HHH-----------------------------hhhhcchhh--hHHHHHHHHHHHHHHhccccceEEEecchhh-----H
Confidence 000 000000110 00011344555555444 4567778887752 2
Q ss_pred HHHHHHcCCC-eEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCH-HHHHHHHHHH-----HhcCCce-
Q 012080 235 EYIARQYNKP-VFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEK-KQFQELLLGL-----ELTGLCF- 306 (471)
Q Consensus 235 ~~~~~~~~~~-v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~~~~al-----~~~~~~~- 306 (471)
+-..+.|..+ +..|=|-+. -++|.......+.+-+..++.|-.-.-.. ..++-.+.-+ +++..++
T Consensus 235 nHI~qiW~~~~~~iVyPPC~-------~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iK 307 (465)
T KOG1387|consen 235 NHIKQIWQSNTCSIVYPPCS-------TEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIK 307 (465)
T ss_pred HHHHHHhhccceeEEcCCCC-------HHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCce
Confidence 2334445432 222222211 12443333333335577787765522111 1122222222 1222232
Q ss_pred EEEeCCCCCCCcccccCChhHHHh---hC-CCcEEeccccCchh---hhcccCcceeec-----cCCcchHHHHHhhCCc
Q 012080 307 LIALKPPTGASTVEEAFPDGFAER---TK-GRGVVCGEWVEQMP---ILEHSSVGCFVS-----HCGFGSMWESLMSDCQ 374 (471)
Q Consensus 307 ~~~~~~~~~~~~~~~~~p~~~~~~---~~-~~nv~~~~~~pq~~---lL~~~~v~~~It-----HgG~~s~~Eal~~GvP 374 (471)
+..+|.+.+.++. + .-..+++. ++ +.++.+..-+|..+ +|..+.+ =|| |-|. |+.|.+++|.=
T Consensus 308 L~ivGScRneeD~-e-rvk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlI 382 (465)
T KOG1387|consen 308 LIIVGSCRNEEDE-E-RVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLI 382 (465)
T ss_pred EEEEeccCChhhH-H-HHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCce
Confidence 3444444332221 1 11112221 11 35577766778755 5555555 222 3333 78999999975
Q ss_pred EEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 375 IVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 375 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
+|+---.+--.+. |. .+ .|-....- ..|.++-.++|-+++....++++.++++|++--+++.+.
T Consensus 383 pi~h~SgGP~lDI---V~-~~-~G~~tGFl---a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 383 PIVHNSGGPLLDI---VT-PW-DGETTGFL---APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred EEEeCCCCCceee---ee-cc-CCccceee---cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 5442211111100 01 00 12112211 257788899999998765566888888888877777554
No 198
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=67.32 E-value=83 Score=27.23 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=57.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe---CC-Cc--hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL---PR-KA--QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~---~~-~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (471)
--|.+++..+.|-..-.+.+|-..+.+|++|.++- .. .. ...++.. ++++.... .+..- .. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g----~g~~~--~~-~ 73 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMG----TGFTW--ET-Q 73 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc-----CcEEEECC----CCCee--cC-C
Confidence 45777888999999999999999999999997662 11 11 1112222 36776654 11110 00 1
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA 126 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~ 126 (471)
+ ... .....+.......+.+.+.++|+||.| +.
T Consensus 74 ~-~~~----~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~ 107 (173)
T TIGR00708 74 N-REA----DTAIAKAAWQHAKEMLADPELDLVLLDELT 107 (173)
T ss_pred C-cHH----HHHHHHHHHHHHHHHHhcCCCCEEEehhhH
Confidence 1 111 112244455566777777899999999 64
No 199
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=67.31 E-value=9.3 Score=38.76 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=43.1
Q ss_pred ccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 358 SHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 358 tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
-|-|. ++.||+++|+|+|+. ++-.-+..++ ..-.|..+++.+ -....+.+++.++..|+
T Consensus 376 E~FGi-v~IEAMa~glPvvAt----~~GGP~EiV~-~~~tG~l~dp~~---e~~~~~a~~~~kl~~~p 434 (495)
T KOG0853|consen 376 EHFGI-VPIEAMACGLPVVAT----NNGGPAEIVV-HGVTGLLIDPGQ---EAVAELADALLKLRRDP 434 (495)
T ss_pred CCccc-eeHHHHhcCCCEEEe----cCCCceEEEE-cCCcceeeCCch---HHHHHHHHHHHHHhcCH
Confidence 44454 789999999999986 4444455555 666687777522 33447999999999998
No 200
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=66.81 E-value=9.5 Score=33.72 Aligned_cols=43 Identities=16% Similarity=0.004 Sum_probs=32.7
Q ss_pred CCeEEEecCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTP-FLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p-~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..||++.-.| ....+- ...+++.|.++||+|.++.++.....+
T Consensus 5 ~k~IllgVTG-siaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 5 GKRIGFGLTG-SHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCEEEEEEcC-HHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 3477765555 445555 799999999999999999999876544
No 201
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=66.51 E-value=95 Score=27.60 Aligned_cols=146 Identities=8% Similarity=0.012 Sum_probs=78.3
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.++.|+-|.++ ...+..|...+.++.++-. . +.+.+.+......+.......+..-+..+++
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~---------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E---------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C---------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 668899888875 3344455556666655522 1 2222222222223444333444556777777
Q ss_pred ceeeccCCcchHHHHHh----hCCcEEeccccccchhhH-----HHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 354 GCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNT-----RLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+|.--+...+.+.++ .|+++-++ |.+..+ ..+. +-++-+.+......-.-...|++.|++++.
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~-~g~l~iaIsT~G~sP~la~~lr~~ie~~~~- 145 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALH-RGKLTISVSTDGASPKLAKKIRDELEALYD- 145 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEE-cCCeEEEEECCCCChHHHHHHHHHHHHHcc-
Confidence 888777766666654 45665443 332221 1222 323334444321111334568888888772
Q ss_pred CchhhHHHHHHHHHHHhhhcCC
Q 012080 425 ESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 425 ~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
.+...+-+.+.++++.+++.
T Consensus 146 --~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 146 --ESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred --hhHHHHHHHHHHHHHHHHHh
Confidence 23346788888888888776
No 202
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=65.42 E-value=1.3e+02 Score=28.83 Aligned_cols=57 Identities=12% Similarity=0.085 Sum_probs=40.1
Q ss_pred CchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchh----hHHHHHHhhcceEEee
Q 012080 343 EQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQIL----NTRLLAEELKVAVEVE 402 (471)
Q Consensus 343 pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~ 402 (471)
|+..+|+.++. +|||-=-.+-+.||+..|+|+.++|+-. +.. -.+.++ +.|.-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~-~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLE-ERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHH-HCCCEEECC
Confidence 56778888887 4666666699999999999999999765 322 223345 555554444
No 203
>PRK10867 signal recognition particle protein; Provisional
Probab=64.55 E-value=58 Score=32.84 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=35.5
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQ 56 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~ 56 (471)
.-|+|+-.++.|-..-+..||..|+++ |++|.++..+.++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 345556778889999999999999999 999999999977653
No 204
>PRK06988 putative formyltransferase; Provisional
Probab=64.42 E-value=36 Score=32.66 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.+.+.+++.+||++|+- + ......+-......++.++++..
T Consensus 68 ~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslL 110 (312)
T PRK06988 68 ELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGSLL 110 (312)
T ss_pred HHHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCccc
Confidence 45567888899998877 5 44444455555555677776643
No 205
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=64.09 E-value=74 Score=29.38 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=55.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
+.+|+++...+-| ..||+.|.++|++|++.+...+.. .... +..... . ++ .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~-----~~~v~~-G-----~l-------~----- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADL-----PGPVRV-G-----GF-------G----- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccC-----CceEEE-C-----CC-------C-----
Confidence 4578888766555 478999999999987765554332 1111 122221 0 00 0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccch-------HHHHHHcCCceEEEec
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWM-------ATISKSLSIKCIKYNV 145 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~-------~~~A~~~giP~v~~~~ 145 (471)
-...+.+++++.+.++|| | --|+| ..+|+.+|||++.+.-
T Consensus 53 -----------~~~~l~~~l~~~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 53 -----------GAEGLAAYLREEGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred -----------CHHHHHHHHHHCCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 134566777888888855 5 34444 4477899999998753
No 206
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=63.24 E-value=84 Score=32.29 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=69.6
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh----ccCCCC------CCCeEEEEecCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL----QHFNLH------PDLITLHPLTVPHVDGLPAG 83 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~----~~~~~~------~~~~~~~~i~~~~~~~~~~~ 83 (471)
..-+++.-.++.|-..-++.++.+.+++|.++.+++.+.....+ +++|-. ...+.+..+. |..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-------p~~ 335 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-------PES 335 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc-------ccc
Confidence 34567777789999999999999999999999999988876555 222310 0113333321 000
Q ss_pred CCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccc------------h---HHHHHHcCCceEEEec
Q 012080 84 AETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYW------------M---ATISKSLSIKCIKYNV 145 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~------------~---~~~A~~~giP~v~~~~ 145 (471)
...+.....+.+.+++.++|.||.| +... . ...++..|+..+....
T Consensus 336 ----------------~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~ 397 (484)
T TIGR02655 336 ----------------AGLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNT 397 (484)
T ss_pred ----------------CChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeec
Confidence 0013345566777888899999999 6321 1 1234667787776544
No 207
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=62.89 E-value=10 Score=33.24 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
.||++.-.++.|= +-...+.+.|.++|++|.++.++..+.++.
T Consensus 2 k~Ill~vtGsiaa-~~~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAA-YKAADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 4777776565554 458999999999999999999998877664
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=62.82 E-value=36 Score=32.91 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=53.5
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHH
Q 012080 20 LPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLV 99 (471)
Q Consensus 20 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (471)
++.|+.|-+--...|++.|.++|+++.+++-.+-.. .. . ....+. ++- ..+...+-+.-+...+.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~-------~~-~-~~~~v~----~~~--~~~~~GDEp~lla~~~~ 107 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRK-------SK-G-EPILVS----DGS--DAEEVGDEPLLLARKLP 107 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCC-------CC-C-CeEEEe----CCC--ChhhhcCHHHHHHHhcC
Confidence 477899999999999999999999999998765321 11 1 112221 111 11111121111111111
Q ss_pred ---HHHHHhHHHHHHHHHhCCCcEEEEc
Q 012080 100 ---IAMDRCRGQVEAVIKAAKPRLLFYD 124 (471)
Q Consensus 100 ---~~~~~~~~~l~~~l~~~~~Dlvi~D 124 (471)
..........+.++++..+|+||.|
T Consensus 108 ~~V~V~~dR~~~~~~~~~~~~~dviilD 135 (326)
T PF02606_consen 108 VPVIVGPDRVAAARAALKEFPADVIILD 135 (326)
T ss_pred CcEEEeCcHHHHHHHHHHHCCCCEEEEc
Confidence 1123456677788888889999999
No 209
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=62.43 E-value=14 Score=36.33 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=58.8
Q ss_pred CcEEe-ccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc----CCc
Q 012080 334 RGVVC-GEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE----NGW 408 (471)
Q Consensus 334 ~nv~~-~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~----~~~ 408 (471)
.+++. .+..+..++|..+++ .||-- ...+.|.+..++|+|....-.|.+.. ..|. ..+.+. ...
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~rg~--~~~~~~~~pg~~~ 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ERGF--YFDYEEDLPGPIV 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TSSB--SS-TTTSSSS-EE
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------ccCC--CCchHhhCCCcee
Confidence 45554 345567789999999 99987 45889999999999987654444422 2222 222210 013
Q ss_pred ccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 409 FSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
-+.++|.++|++++.++ ..++++-++..+.+...
T Consensus 321 ~~~~eL~~~i~~~~~~~----~~~~~~~~~~~~~~~~~ 354 (369)
T PF04464_consen 321 YNFEELIEAIENIIENP----DEYKEKREKFRDKFFKY 354 (369)
T ss_dssp SSHHHHHHHHTTHHHHH----HHTHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHhhhhCC----HHHHHHHHHHHHHhCCC
Confidence 46799999999998764 14556666666666444
No 210
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=62.37 E-value=31 Score=31.50 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCcEEEEEeCcccc---CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEecccc--Cc-hh
Q 012080 273 RSSVVYCAFGSQII---LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWV--EQ-MP 346 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~--pq-~~ 346 (471)
+++.|.+..|+... ++.+.+.++++.+...+.++++..++. +. ....-+.+........+.+.+-. .+ ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-EQ---EKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-HH---HHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-HH---HHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 35577777777554 677889999998877666655544321 10 00000111111111233343322 22 46
Q ss_pred hhcccCcceeeccCCcchHHHHHhhCCcEEec
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLMSDCQIVLV 378 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~ 378 (471)
++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 8888988 8887 567889999999999998
No 211
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.28 E-value=26 Score=34.92 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
+...|+++-.-+.|-..-+-.||+.|.++|+.|.+++.+-++.-.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA 143 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA 143 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH
Confidence 345677778888999999999999999999999999999877533
No 212
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=61.02 E-value=16 Score=33.37 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=33.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
.-+++.-.++.|-..-+..++.+.+++|..|.|++.+....
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 34566677889999999999888888999999999887543
No 213
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=61.01 E-value=37 Score=34.54 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=56.6
Q ss_pred ccCHHHHHHHHHHHHhC--------CCe----EEEEe---CCCchh----hhccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 25 VGHMTPFLHLSNKLAEK--------GHK----ITILL---PRKAQT----QLQHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~r--------Gh~----Vt~~~---~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
.|.+.-.+.+|++|.+. |-+ |.+++ ++.... ..+.. ....+..+..+||-..+++...+-
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~-~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKV-SGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEE-TTESSEEEEEE-ESESTEEE-S--
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcccccccc-CCCCCcEEEEecCCCCcchhhhcc
Confidence 36778888888888542 433 44443 332211 11111 112347777777643222111111
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecch
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. ....+-++....+.....+.+.+ ..+||+|+.. . ...|..+|+++|||......+.
T Consensus 375 s----rf~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 375 S----RFDLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp -----GGG-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred c----hhhchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 0 11223334333333333333333 3479999999 3 7788889999999998776554
No 214
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=60.28 E-value=10 Score=32.99 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=25.5
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+||.++ ++.|++- -.|+++..+|||+||-++-...+
T Consensus 1 mKIaiI--gAsG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAII--GASGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEE--ecCchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 356665 2334433 35789999999999999887754
No 215
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=59.96 E-value=12 Score=32.92 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchhhhc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~~ 58 (471)
|.||++.-.|+.| .+=...++++|.+ .||+|.++.++.....+.
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~ 45 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLA 45 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHH
Confidence 3578776666666 7779999999999 599999999999887764
No 216
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=59.49 E-value=26 Score=35.29 Aligned_cols=90 Identities=10% Similarity=0.074 Sum_probs=52.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+++|||++-.+++-| +||+.|++-++-..+++.+.+...... . .....+ + ...
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~-~------~~~~~~------~-----~~~---- 55 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDD-E------LLPADS------F-----SIL---- 55 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhcc-c------cccccC------c-----CcC----
Confidence 457999998887766 689999998865555554443211100 0 000000 0 000
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC-ccch---HHHHHHcCCceE
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI-AYWM---ATISKSLSIKCI 141 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~-~~~~---~~~A~~~giP~v 141 (471)
-...+.+++++.++|+||... .+.. ..+++.+|+|++
T Consensus 56 ------------d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 56 ------------DKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCF 96 (426)
T ss_pred ------------CHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcC
Confidence 022345567778999999983 3332 345677999976
No 217
>PLN02929 NADH kinase
Probab=59.30 E-value=14 Score=35.14 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=44.8
Q ss_pred ccCcceeeccCCcchHHHHHh---hCCcEEeccccc------cchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHH
Q 012080 350 HSSVGCFVSHCGFGSMWESLM---SDCQIVLVPHLG------DQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKC 420 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ 420 (471)
.+++ +|+-||=||++.+.. .++|++.+=.-. .++.|... + ..-+|.... ++.+++.++|++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~-~r~lGfL~~------~~~~~~~~~L~~ 133 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-A-RRSTGHLCA------ATAEDFEQVLDD 133 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-c-ccCcccccc------CCHHHHHHHHHH
Confidence 4566 999999999999955 478998875421 23333322 1 223555444 678999999999
Q ss_pred Hhcc
Q 012080 421 VMDK 424 (471)
Q Consensus 421 ll~~ 424 (471)
++.+
T Consensus 134 il~g 137 (301)
T PLN02929 134 VLFG 137 (301)
T ss_pred HHcC
Confidence 9975
No 218
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=59.28 E-value=1.2e+02 Score=28.33 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=33.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
.-|+|+..++.|-..-+..||..|+++|++|.++..+.++
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 3455567788899999999999999999999999988653
No 219
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.02 E-value=53 Score=33.34 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=34.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++.-.++.|-..-++.+|..+.++|.+|.+++.+.....+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 455566788999999999999999899999999988766544
No 220
>PRK05920 aromatic acid decarboxylase; Validated
Probab=58.83 E-value=14 Score=33.00 Aligned_cols=44 Identities=16% Similarity=0.052 Sum_probs=34.6
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
+.||++.-.+ ....+=...+.+.|.+.||+|+++.++....++.
T Consensus 3 ~krIllgITG-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~ 46 (204)
T PRK05920 3 MKRIVLAITG-ASGAIYGVRLLECLLAADYEVHLVISKAAQKVLA 46 (204)
T ss_pred CCEEEEEEeC-HHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHH
Confidence 3577776444 3445789999999999999999999999877663
No 221
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=57.52 E-value=63 Score=29.86 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=53.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+||+++...+-| ..||+.|.++|+ |++-+.-.+...... ......... .. ++ .
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~--~~~~~~~v~-~G-----~l-------g------ 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLK--PELPGLEVR-VG-----RL-------G------ 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhc--cccCCceEE-EC-----CC-------C------
Confidence 477877665555 478999999999 665444433322211 000011111 11 00 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccch-------HHHHHHcCCceEEEec
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWM-------ATISKSLSIKCIKYNV 145 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~-------~~~A~~~giP~v~~~~ 145 (471)
-...+.+++++.++|+|| | --|++ ..+|+.+|||++.+.-
T Consensus 54 ----------~~~~l~~~l~~~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~eR 101 (249)
T PF02571_consen 54 ----------DEEGLAEFLRENGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFER 101 (249)
T ss_pred ----------CHHHHHHHHHhCCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEEc
Confidence 134567777888888866 5 34443 4477899999998753
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.46 E-value=21 Score=29.69 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=38.6
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
.++.+|++.+.+.-||-.-..-+++.|+..|.+|...+.-...+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~ 53 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPE 53 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHH
Confidence 46789999999999999999999999999999999887665544
No 223
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=57.35 E-value=1e+02 Score=31.05 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.3
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
.-|+|+-.++.|-..-+..||..|.++|++|.+++.+.++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34666677889999999999999999999999999988763
No 224
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=57.10 E-value=20 Score=33.29 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCcEEEEc-C------ccchHHHHHHcCCceEEEecc
Q 012080 108 QVEAVIKAAKPRLLFYD-I------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~------~~~~~~~A~~~giP~v~~~~~ 146 (471)
.|.+.+++..||+|++- - ...+..+|+.+|+|++.+...
T Consensus 103 ~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 34445556679999985 2 346788999999999987665
No 225
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=56.79 E-value=18 Score=31.40 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=65.8
Q ss_pred CCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChh-HHHhhCCCcEEeccccCchhhhccc
Q 012080 273 RSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDG-FAERTKGRGVVCGEWVEQMPILEHS 351 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~nv~~~~~~pq~~lL~~~ 351 (471)
.+.+-.+++|.++ +++++-++..|.+++..-+.. -+.. +. ..++ .+.+..++|+.+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~---------~~~~~~~----~~~~---~~~~l~ell~~a 92 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP---------KPEEGAD----EFGV---EYVSLDELLAQA 92 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC---------HHHHHHH----HTTE---EESSHHHHHHH-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC---------Chhhhcc----cccc---eeeehhhhcchh
Confidence 3569999999986 556666666788877664321 0010 11 1111 366788999999
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcce-EEeecccCCcccHHHHHHHHHH
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVA-VEVEREENGWFSKESLCKAIKC 420 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~t~~~l~~ai~~ 420 (471)
++ ++-|+-.+. -.....|+..+. .++-| +.+...+.+.+..+.|.+++++
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~-~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLA-KMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHH-TSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeee-ccccceEEEeccchhhhhhhHHHHHHhh
Confidence 98 877764321 136788999999 88876 5555555567788878777753
No 226
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=56.71 E-value=61 Score=24.33 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHH
Q 012080 31 FLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVE 110 (471)
Q Consensus 31 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (471)
++.+++.|.+.|+++ +++. .....++..| +.+.... ....++ .+.+.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~G-----i~~~~~~----~ki~~~----------------------~~~i~ 48 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREAG-----LPVKTLH----PKVHGG----------------------ILAIL 48 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHCC-----Ccceecc----CCCCCC----------------------CHHHH
Confidence 468899999999997 3444 4445555555 5432111 001011 01366
Q ss_pred HHHHhCCCcEEEEcCcc----------chHHHHHHcCCceE
Q 012080 111 AVIKAAKPRLLFYDIAY----------WMATISKSLSIKCI 141 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~~~----------~~~~~A~~~giP~v 141 (471)
+.+++.++|+||..... .-..+|...+||++
T Consensus 49 ~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 49 DLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 78888899999985211 12335777888875
No 227
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=56.64 E-value=50 Score=28.16 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=30.0
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 17 IVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 17 il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|+|. +-|+.|-..-...||..|+++|++|.++=.+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4455 45888999999999999999999999986654
No 228
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=56.47 E-value=1.5e+02 Score=26.47 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=76.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.++.|+-|... ..-+..|...+.++.++-. . +-+.+..-....++.+..--.+...|..+++
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp-~---------~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l 72 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAE-E---------LESELTLLAEQGGITWLARCFDADILEGAFL 72 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcC-C---------CCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE
Confidence 568888888764 2334445456777665522 1 1122222112224433221223445666776
Q ss_pred ceeeccCCcchHHH-----HHhhCCcEEe--ccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCc
Q 012080 354 GCFVSHCGFGSMWE-----SLMSDCQIVL--VPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKES 426 (471)
Q Consensus 354 ~~~ItHgG~~s~~E-----al~~GvP~v~--~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~ 426 (471)
+|..-|...+.+ |-..|+|+-+ -|-..| +..-..+. +=++-+.+......-.-...|++.|++++.+
T Consensus 73 --Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~-~g~l~iaisT~G~sP~la~~lr~~ie~~l~~-- 146 (205)
T TIGR01470 73 --VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVD-RSPVVVAISSGGAAPVLARLLRERIETLLPP-- 146 (205)
T ss_pred --EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEE-cCCEEEEEECCCCCcHHHHHHHHHHHHhcch--
Confidence 888877764444 4457888833 333333 11122222 2233344443211113346688888888843
Q ss_pred hhhHHHHHHHHHHHhhhcCC
Q 012080 427 EVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 427 ~~~~~~~~~a~~l~~~~~~~ 446 (471)
.-..+-+.+.++++.+++.
T Consensus 147 -~~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 147 -SLGDLATLAATWRDAVKKR 165 (205)
T ss_pred -hHHHHHHHHHHHHHHHHhh
Confidence 1236777788888887765
No 229
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=56.14 E-value=45 Score=31.02 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=32.3
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
-+++.-.|+.|=..-++.+|...+++|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 355566688999999999999988899999999988533
No 230
>PRK04328 hypothetical protein; Provisional
Probab=56.10 E-value=1.7e+02 Score=26.98 Aligned_cols=44 Identities=7% Similarity=-0.105 Sum_probs=34.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..-+++.-.++.|-..-++.++.+-+++|+.+.+++.+.....+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 34566667788999999999887777889999999987765543
No 231
>PRK12342 hypothetical protein; Provisional
Probab=56.01 E-value=22 Score=32.98 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCcEEEEc-C------ccchHHHHHHcCCceEEEecc
Q 012080 108 QVEAVIKAAKPRLLFYD-I------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~------~~~~~~~A~~~giP~v~~~~~ 146 (471)
.|.+.+++.+||+|++- - ...+..+|+.+|+|++.....
T Consensus 100 ~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 34445555679999985 2 344788999999999987655
No 232
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.84 E-value=1e+02 Score=31.08 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=34.3
Q ss_pred eEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQ 56 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~ 56 (471)
-|+++..++.|-..-+..||..|. ++|.+|.++..+.++..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 455567788999999999999997 68999999999987653
No 233
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.72 E-value=20 Score=33.45 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred ccCcceeeccCCcchHHHHHh------hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 350 HSSVGCFVSHCGFGSMWESLM------SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~------~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
.+++ +|+-||=||++.+++ .++|++.+-.. + +|..-+ +.++++.++++++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G------------~--lGFL~~------~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG------------H--LGFYTD------WRPFEVDKLVIALAK 92 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC------------C--ceeccc------CCHHHHHHHHHHHHc
Confidence 3555 999999999999986 48888887631 1 232222 677888888888887
Q ss_pred c
Q 012080 424 K 424 (471)
Q Consensus 424 ~ 424 (471)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 5
No 234
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=55.69 E-value=24 Score=36.73 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=51.1
Q ss_pred CchhhhcccCcceeeccCC-c-chHHHHHhhCCcEEeccccc-----cchhhHHHHHHhhcceEEeecccCCcccHHHHH
Q 012080 343 EQMPILEHSSVGCFVSHCG-F-GSMWESLMSDCQIVLVPHLG-----DQILNTRLLAEELKVAVEVEREENGWFSKESLC 415 (471)
Q Consensus 343 pq~~lL~~~~v~~~ItHgG-~-~s~~Eal~~GvP~v~~P~~~-----DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~ 415 (471)
|+.+++.-|++++|-+-== | -|-+||.+.|||.|.-=+.+ .+... .-. ..|+-+.=... -+.++..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~--~~~-~~GV~VvdR~~----~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE--DPE-EYGVYVVDRRD----KNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS---HHG-GGTEEEE-SSS----S-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc--cCc-CCcEEEEeCCC----CCHHHHH
Confidence 4556666677766665211 3 28999999999999876522 22222 112 44554433332 3455544
Q ss_pred HHHH----HHhccCchhhHHHHHHHHHHHhhh
Q 012080 416 KAIK----CVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 416 ~ai~----~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
+.|. +...-+..+...+|.+|++|++.+
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4444 444444567778999999999886
No 235
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=55.49 E-value=50 Score=31.72 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+||+|+..+. ..+...++|.++||+|..+.+..
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEEcCC
Confidence 4788885553 34667788889999988776554
No 236
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=55.32 E-value=8.4 Score=29.54 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHH
Q 012080 31 FLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVE 110 (471)
Q Consensus 31 ~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (471)
++++|+.|.+.|++ +++++.....+++.| +....+-- .....+.... . ..+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~G-----i~~~~v~~-----~~~~~~~~~g----~------------~~i~ 53 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEHG-----IEVTEVVN-----KIGEGESPDG----R------------VQIM 53 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHTT-------EEECCE-----EHSTG-GGTH----C------------HHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHcC-----CCceeeee-----ecccCccCCc----h------------hHHH
Confidence 57899999999976 455565556666666 66444320 0000000000 0 0677
Q ss_pred HHHHhCCCcEEEEc-C--ccc----h---HHHHHHcCCceE
Q 012080 111 AVIKAAKPRLLFYD-I--AYW----M---ATISKSLSIKCI 141 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D-~--~~~----~---~~~A~~~giP~v 141 (471)
+++++.+.|+||.. . ... + ..+|...+||++
T Consensus 54 ~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 54 DLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 88899999999988 3 111 1 236777888876
No 237
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=55.29 E-value=26 Score=31.12 Aligned_cols=41 Identities=12% Similarity=-0.095 Sum_probs=36.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+..+|++.+.++-.|-....-++..|.++|++|++++..-.
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p 121 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVP 121 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 35789999999999999999999999999999998886643
No 238
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=55.15 E-value=64 Score=25.48 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
+=.-++.+|+.|.+.|+++ ++++....+++..| +.+..+.- .+++ -.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~G-----i~~~~v~~-----~~~~---------------------g~ 56 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADAG-----IPVRAVSK-----RHED---------------------GE 56 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHcC-----CceEEEEe-----cCCC---------------------CC
Confidence 4456889999999999986 35555555565555 55554420 1110 12
Q ss_pred HHHHHHHHh-CCCcEEEEc---Cc--------cchHHHHHHcCCceEE
Q 012080 107 GQVEAVIKA-AKPRLLFYD---IA--------YWMATISKSLSIKCIK 142 (471)
Q Consensus 107 ~~l~~~l~~-~~~Dlvi~D---~~--------~~~~~~A~~~giP~v~ 142 (471)
+.+.+.+++ .++|+||.- .. +.-..+|...+||++.
T Consensus 57 ~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 57 PTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred cHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 356677778 899999883 21 1123367888999985
No 239
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=55.04 E-value=23 Score=33.61 Aligned_cols=54 Identities=9% Similarity=0.155 Sum_probs=39.3
Q ss_pred cccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 349 EHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 349 ~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
..+++ +|+-||=||+++++.. ++|++.+-. . + +|...+ ++.+++.++|++++..
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~--G----------~--lGFL~~------~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH--G----------R--LGFITD------IPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC--C----------C--cccccc------CCHHHHHHHHHHHHcC
Confidence 34566 9999999999999874 678777652 1 2 233332 7788899999999875
No 240
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=54.35 E-value=24 Score=28.49 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=34.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
||++.+.++-.|..-..-++.-|...|++|.+.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 57888999999999999999999999999999987654
No 241
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=54.21 E-value=76 Score=26.75 Aligned_cols=139 Identities=14% Similarity=0.197 Sum_probs=64.6
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcce
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGC 355 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~ 355 (471)
.|-|=+||.. +....+++...|+..+..+-+.+-. .+ ..|+.+.+ ++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~s-aH------R~p~~l~~-----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVAS-AH------RTPERLLE-----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE---TT------TSHHHHHH-----------HHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEe-cc------CCHHHHHH-----------HHHHhcc-CCCEE--
Confidence 4556677765 5666788888888888776555431 11 24554321 1111100 12334
Q ss_pred eeccCCcchHHHHHhh---CCcEEeccccccchhhHH----HHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchh
Q 012080 356 FVSHCGFGSMWESLMS---DCQIVLVPHLGDQILNTR----LLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEV 428 (471)
Q Consensus 356 ~ItHgG~~s~~Eal~~---GvP~v~~P~~~DQ~~na~----~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~ 428 (471)
||.=.|...-+-++.+ -.|+|.+|....+..... .++---|+++..-.-. .-.+...+...|-. +.|+
T Consensus 59 iIa~AG~~a~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-~~~nAA~~A~~ILa-~~d~--- 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-NGFNAALLAARILA-LKDP--- 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-HHHHHHHHHHHHHH-TT-H---
T ss_pred EEEECCCcccchhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-CchHHHHHHHHHHh-cCCH---
Confidence 8887776544433332 689999998766443222 2220224443222100 11333333333322 2444
Q ss_pred hHHHHHHHHHHHhhhc
Q 012080 429 GNVVRRNHAKWKGTLV 444 (471)
Q Consensus 429 ~~~~~~~a~~l~~~~~ 444 (471)
+++++.+..++.++
T Consensus 134 --~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 134 --ELREKLRAYREKMK 147 (150)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHH
Confidence 77777777776654
No 242
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=53.62 E-value=31 Score=30.63 Aligned_cols=43 Identities=12% Similarity=-0.188 Sum_probs=38.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
++.+|++.+.++--|-....-++.-|..+|++|++++.+-..+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e 125 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPID 125 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 4568999999999999999999999999999999998876543
No 243
>PRK13768 GTPase; Provisional
Probab=53.49 E-value=52 Score=30.47 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=30.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+++...++.|-..-+..++..|.++|++|.++-.+..
T Consensus 5 i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 5 VFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4445557889999999999999999999999876653
No 244
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=53.44 E-value=27 Score=31.82 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=23.6
Q ss_pred CcE-EEEc-C-ccchHHHHHHcCCceEEEecc
Q 012080 118 PRL-LFYD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 118 ~Dl-vi~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
||+ +|.| - .--|+.=|.++|||+|.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 998 5566 4 778888899999999988654
No 245
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=52.99 E-value=34 Score=31.11 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=36.5
Q ss_pred CeEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 15 FPIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 15 ~~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
.-|.|++. ||.|-..-++.||.+|+++|-+|+++=.++++...
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~ 45 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLA 45 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH
Confidence 34667744 88999999999999999999999999988877544
No 246
>PRK05595 replicative DNA helicase; Provisional
Probab=52.68 E-value=1e+02 Score=31.22 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=33.4
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|=..-++.+|..++ +.|+.|.+++.+.....+
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 45557899999999999998875 569999999998765544
No 247
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=52.58 E-value=97 Score=24.22 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHh
Q 012080 26 GHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRC 105 (471)
Q Consensus 26 GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (471)
.+-.-++++++.|.+.|+++ + +++......+..| +.+..+... .. .
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~-aT~gT~~~l~~~g-----i~~~~v~~~-----~~----------------------~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-V-ATEGTAKYLQEAG-----IPVEVVNKV-----SE----------------------G 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-E-EchHHHHHHHHcC-----CeEEEEeec-----CC----------------------C
Confidence 45667889999999999997 3 4455555565555 655444310 00 1
Q ss_pred HHHHHHHHHhCCCcEEEEcC--------ccchHHHHHHcCCceEE
Q 012080 106 RGQVEAVIKAAKPRLLFYDI--------AYWMATISKSLSIKCIK 142 (471)
Q Consensus 106 ~~~l~~~l~~~~~Dlvi~D~--------~~~~~~~A~~~giP~v~ 142 (471)
.+.+.+.+++.++|+||.-. ...-...|-..|||++.
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 23566778888999999852 13334468889999984
No 248
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=52.08 E-value=1.6e+02 Score=27.91 Aligned_cols=104 Identities=12% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHh--CCCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAE--KGHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~--rGh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.+++||+++..+. |+- +.+|.++... .+++|.++.+.. .....++.| +.+..++.. +..
T Consensus 87 ~~~~ri~vl~Sg~-g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----Ip~~~~~~~-----~~~---- 149 (286)
T PRK13011 87 AARPKVLIMVSKF-DHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHG-----IPFHHFPIT-----PDT---- 149 (286)
T ss_pred ccCceEEEEEcCC-ccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhC-----CCEEEeCCC-----cCc----
Confidence 4567999998774 432 3334444433 368988876543 334445555 777666411 000
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecc
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.......+.+.+++.++|++|.- + ......+-+...-..+-++++
T Consensus 150 --------------~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 150 --------------KPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred --------------hhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEeccc
Confidence 01122346677888899998887 5 555555556555555665544
No 249
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=51.77 E-value=20 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=31.2
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 5666655656655555699999999999999999888654
No 250
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=51.47 E-value=1.4e+02 Score=28.51 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.+.+.+++.+||++|+= + ......+-+.....++.++++..
T Consensus 69 ~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHpslL 111 (309)
T PRK00005 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHASLL 111 (309)
T ss_pred HHHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCccc
Confidence 34556778899998886 5 45555555666666787777653
No 251
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=51.12 E-value=1.6e+02 Score=27.88 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=16.6
Q ss_pred HhHHHHHHHHHhCCCcEEEE
Q 012080 104 RCRGQVEAVIKAAKPRLLFY 123 (471)
Q Consensus 104 ~~~~~l~~~l~~~~~Dlvi~ 123 (471)
.....+.++|++.+||+||+
T Consensus 108 ~~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 35577888999999999887
No 252
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=51.08 E-value=1.6e+02 Score=25.16 Aligned_cols=27 Identities=7% Similarity=0.345 Sum_probs=21.7
Q ss_pred cceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
..++++|.|- +.+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3347888774 47889999999999996
No 253
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.47 E-value=26 Score=33.13 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=39.8
Q ss_pred hhhcccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV 421 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l 421 (471)
++...+++ +|+-||-||++.+++. ++|++.+-.. + +|...+ ++.+++.++|+++
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFLt~------~~~~~~~~~l~~i 117 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG------------H--LGFLTD------ITVDEAEKFFQAF 117 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC------------C--cccCCc------CCHHHHHHHHHHH
Confidence 33445666 9999999999988663 7787776521 1 232222 6788899999998
Q ss_pred hcc
Q 012080 422 MDK 424 (471)
Q Consensus 422 l~~ 424 (471)
+.+
T Consensus 118 ~~g 120 (287)
T PRK14077 118 FQG 120 (287)
T ss_pred HcC
Confidence 875
No 254
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=50.19 E-value=77 Score=32.25 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=34.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++.--++.|-..-++.++..+.++|++|.|++.+.....+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 345556688999999999999999999999999988765544
No 255
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.16 E-value=27 Score=30.32 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=21.3
Q ss_pred ccCcceeeccCCcchHHHHHhhCCcEEecccc
Q 012080 350 HSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL 381 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 381 (471)
+..+.++|+.||...++.... ++|+|-+|..
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 344444999999999999988 9999999963
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=49.98 E-value=20 Score=33.21 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=37.6
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..+++|+-.+|.|=..=+.+||.+|.++|+.|+|++.+.....+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45789998888998888999999999889999999988865544
No 257
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=49.68 E-value=65 Score=30.73 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=27.6
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
++||+|+-.+. .....-++|.+.||+|.-+.+...+.
T Consensus 1 ~mkivF~GTp~-----fa~~~L~~L~~~~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPE-----FAVPSLEALIEAGHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCch-----hhHHHHHHHHhCCCceEEEEeCCCCc
Confidence 46899987764 44566778888999988887776554
No 258
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.44 E-value=22 Score=33.28 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=41.5
Q ss_pred CchhhhcccCcceeeccCCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHH
Q 012080 343 EQMPILEHSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAI 418 (471)
Q Consensus 343 pq~~lL~~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai 418 (471)
++.++...+++ +|+=||=||++.+++ .++|++.+-.. + +|...+ ++++++.+++
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL~~------~~~~~~~~~l 92 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFLTD------IDPKNAYEQL 92 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Cccccc------CCHHHHHHHH
Confidence 33445555677 999999999998865 36788877521 1 333333 6778888888
Q ss_pred HHHhcc
Q 012080 419 KCVMDK 424 (471)
Q Consensus 419 ~~ll~~ 424 (471)
.+++.+
T Consensus 93 ~~~~~~ 98 (272)
T PRK02231 93 EACLER 98 (272)
T ss_pred HHHHhc
Confidence 888873
No 259
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=48.80 E-value=16 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
.+--.+-++..|+++||+|++++++.....++-
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 444567789999999999999999998777754
No 260
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=48.73 E-value=1.6e+02 Score=29.20 Aligned_cols=62 Identities=24% Similarity=0.222 Sum_probs=37.0
Q ss_pred eeccCCcchHHHHHhhCCcEEe--ccccccch------hhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 356 FVSHCGFGSMWESLMSDCQIVL--VPHLGDQI------LNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 356 ~ItHgG~~s~~Eal~~GvP~v~--~P~~~DQ~------~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+-|+ |..++..|+.+|.|+-. ++.++|-- .|+.++. +--+=.. ..++.+++..+|.++++|.
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a-~~~~d~v------vvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELA-QKLVDRV------VVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHH-HhcCceE------EEeccHHHHHHHHHHHHhh
Confidence 4454 67788999999988732 22233321 2344433 2111111 2378899999999999875
No 261
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=48.69 E-value=1.4e+02 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=34.1
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++.-.|+.|=..-++.++.+..++|..|.+++.+.....+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 45666788899999999999999999999999988765544
No 262
>PRK08760 replicative DNA helicase; Provisional
Probab=48.58 E-value=97 Score=31.77 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=33.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~ 57 (471)
-|++...|+.|=..-++.+|...+. .|+.|.|++.+.....+
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 3555688999999999999998864 59999999988766543
No 263
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=48.37 E-value=45 Score=29.35 Aligned_cols=44 Identities=7% Similarity=-0.052 Sum_probs=33.0
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEec
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
++.....+.+.+++.++|+|++= . .+.|..+|..+|+|++...-
T Consensus 35 l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 35 MNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 33344455556666789999876 4 88899999999999997764
No 264
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=48.21 E-value=50 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=29.9
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 20 LPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 20 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++.|+.|-+--.+.||++|++||.++-+++-.+
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 478999999999999999999999999987665
No 265
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=48.00 E-value=1.9e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.006 Sum_probs=24.6
Q ss_pred CCcEEEEc--C-ccchHHHHHHcCCceEEEecch
Q 012080 117 KPRLLFYD--I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 117 ~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.||+||+- . ...+..=|..+|||.|.+.-+.
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 69995554 4 7788888999999999887553
No 266
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=47.86 E-value=58 Score=31.67 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCcEEEEEeCccc----cCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCC---c-EEeccc--c
Q 012080 273 RSSVVYCAFGSQI----ILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGR---G-VVCGEW--V 342 (471)
Q Consensus 273 ~~~vV~vs~Gs~~----~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---n-v~~~~~--~ 342 (471)
+++.|.+.-|+.. .++.+.+.++++.+...+.++++. +.+.+. . .-+.+....... + +.+.+- +
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~e~-~----~~~~i~~~~~~~~~~~~~~l~g~~sL 252 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAKDH-E----AGNEILAALNTEQQAWCRNLAGETQL 252 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHHhH-H----HHHHHHHhcccccccceeeccCCCCH
Confidence 4568888888742 278899999998886566776654 322111 1 112222111111 1 222222 2
Q ss_pred Cc-hhhhcccCcceeeccCCcchHHHHHhhCCcEEec
Q 012080 343 EQ-MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLV 378 (471)
Q Consensus 343 pq-~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~ 378 (471)
.+ ..+++++++ ||+. -.|-++=|.+.|+|+|++
T Consensus 253 ~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 253 EQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 33 458888998 9987 567899999999999876
No 267
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.83 E-value=35 Score=32.63 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=41.7
Q ss_pred hhcccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
+...+++ +|+=||=||++.+++. ++|++.+... + +|...+ +..+++.++|++++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~--lGFL~~------~~~~~~~~~l~~i~ 126 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG------------H--VGFLAE------AEAEDLDEAVERVV 126 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC------------C--Cceecc------CCHHHHHHHHHHHH
Confidence 3345666 9999999999999764 8898888741 1 343333 67888999999999
Q ss_pred cc
Q 012080 423 DK 424 (471)
Q Consensus 423 ~~ 424 (471)
.+
T Consensus 127 ~g 128 (306)
T PRK03372 127 DR 128 (306)
T ss_pred cC
Confidence 75
No 268
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.23 E-value=1.5e+02 Score=29.85 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++++++++.+||++|.+.. +..+|+++|||++.+.
T Consensus 362 ~e~~~~l~~~~~dliiG~s~--~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY--GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch--hHHHHHHcCCCEEEec
Confidence 46777888889999999932 3678999999998553
No 269
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=47.03 E-value=40 Score=32.51 Aligned_cols=48 Identities=10% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHHhCCCcEEEEc--Ccc------chH---HHHHHcCCceEEEe
Q 012080 97 LLVIAMDRCRGQVEAVIKAAKPRLLFYD--IAY------WMA---TISKSLSIKCIKYN 144 (471)
Q Consensus 97 ~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~~~------~~~---~~A~~~giP~v~~~ 144 (471)
++....+...+.+.+.+++.+||++|+- |.. ||. .+.++++||.+.-.
T Consensus 60 yf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 60 YFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 4555566777889999999999999998 332 222 24568999998543
No 270
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=46.97 E-value=40 Score=30.35 Aligned_cols=42 Identities=17% Similarity=-0.093 Sum_probs=37.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+..+|++.+.++-.|-.-..-++..|..+|++|++++.+-..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 128 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPI 128 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 457899999999999999999999999999999999977543
No 271
>PRK06321 replicative DNA helicase; Provisional
Probab=46.52 E-value=2e+02 Score=29.51 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=33.5
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
|++...|+.|-..-++.+|...+ +.|..|.|++-+.....+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 55568899999999999999987 458999999988765544
No 272
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=46.35 E-value=66 Score=24.54 Aligned_cols=62 Identities=15% Similarity=0.023 Sum_probs=42.0
Q ss_pred ccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 012080 382 GDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFV 457 (471)
Q Consensus 382 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~ 457 (471)
.|+..|....+ .+|.+.+.. +++.+++.++.++++.. ..=++.+=+.+...|..-+..-+++
T Consensus 20 ~~~~gWr~LAe-~lg~~~~fr------~S~~el~~cslkvl~p~-------gSPsk~LL~~~~~rg~Tv~~Ll~~L 81 (97)
T cd08783 20 ADGKGWRKLAE-LAGSRGRFR------LSCLDLEQCSLKVLEPE-------GSPSRSLLKLLGERGCTVTELSEFL 81 (97)
T ss_pred CccCCHHHHHH-HHccCCccc------cCHHHHHHHHHHHhcCC-------CCchHHHHHHHHHcCCcHHHHHHHH
Confidence 46788999999 999988555 89999999999999753 1233444455555554443333333
No 273
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=46.29 E-value=24 Score=30.87 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=30.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
|++.-.|+.|- +-...+.+.|+++|++|.++.++....++.
T Consensus 2 illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 2 IVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred EEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 44444444444 445889999999999999999999887663
No 274
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=46.13 E-value=1.7e+02 Score=27.71 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=58.4
Q ss_pred EEeccCCCCCCC-CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCC
Q 012080 246 FLTGPVLHEPAK-TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFP 324 (471)
Q Consensus 246 ~~vGp~~~~~~~-~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p 324 (471)
+|+|....++.. ...-.++........-+++-+-........+...+..+.++++.+|.++++-.+.+.........
T Consensus 99 rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~-- 176 (293)
T COG2159 99 RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG-- 176 (293)
T ss_pred ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC--
Confidence 555644333221 22334666666654433444434444333455557889999999999999976643211111000
Q ss_pred hhHHHhhCCCcEEeccccC---chhhhcccCcceeeccCC--cchHHHH
Q 012080 325 DGFAERTKGRGVVCGEWVE---QMPILEHSSVGCFVSHCG--FGSMWES 368 (471)
Q Consensus 325 ~~~~~~~~~~nv~~~~~~p---q~~lL~~~~v~~~ItHgG--~~s~~Ea 368 (471)
...| ..-.-+.|+++.++.|+| ..=..|+
T Consensus 177 ---------------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 177 ---------------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ---------------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0111 123445789999999999 5555555
No 275
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.06 E-value=1.4e+02 Score=29.99 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++++.+++.+||+||.+.. ...+|+++|+|++.+.
T Consensus 361 ~el~~~i~~~~pdliig~~~--~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH--GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECch--hHHHHHhcCCCEEEec
Confidence 45667888889999999942 2567889999998654
No 276
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=46.05 E-value=47 Score=29.16 Aligned_cols=43 Identities=16% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCCc--EEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 106 RGQVEAVIKAAKPR--LLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 106 ~~~l~~~l~~~~~D--lvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
...+++++++..++ ++|.. + -++|..+|+..++|.|.+.|...
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 45667777777655 77777 6 88888999999999988876654
No 277
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=45.97 E-value=33 Score=22.15 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=17.9
Q ss_pred cHHHHHHHHHHHhcc-CchhhHHHHHHHHHH
Q 012080 410 SKESLCKAIKCVMDK-ESEVGNVVRRNHAKW 439 (471)
Q Consensus 410 t~~~l~~ai~~ll~~-~~~~~~~~~~~a~~l 439 (471)
|+++|.+||..+..+ - ++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~-----S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKM-----SIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS------HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCC-----CHHHHHHHH
Confidence 578899999999965 3 777776654
No 278
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=45.79 E-value=55 Score=28.52 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEe
Q 012080 108 QVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~ 144 (471)
.+.+.++..++|.|++= - .+.|..+|.++|+|++...
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 66667777789999987 3 8889999999999999764
No 279
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=45.61 E-value=1e+02 Score=24.34 Aligned_cols=85 Identities=15% Similarity=0.215 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
+-.-+..+|+.|.+.|++| ++++.........| +.+..+. ...+. . .. . .
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~g-----i~~~~v~-----~~~~~-~--~~---~------------~ 60 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLENG-----IPVTPVA-----WPSEE-P--QN---D------------K 60 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHcC-----CCceEee-----eccCC-C--CC---C------------c
Confidence 4456889999999999987 34555554555545 4443331 00000 0 00 0 1
Q ss_pred HHHHHHHHhCCCcEEEEc-C---------ccchHHHHHHcCCceE
Q 012080 107 GQVEAVIKAAKPRLLFYD-I---------AYWMATISKSLSIKCI 141 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D-~---------~~~~~~~A~~~giP~v 141 (471)
+.+.+++++.++|+||.- - .+.-...|-.+|||++
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~i 105 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLI 105 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCccc
Confidence 456777888899999984 1 1334457888999997
No 280
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=45.22 E-value=2.1e+02 Score=25.05 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=35.4
Q ss_pred CCeEEEec---CCC-cc-CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecC
Q 012080 14 AFPIVMLP---WFA-VG-HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTV 74 (471)
Q Consensus 14 ~~~il~~~---~~~-~G-H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (471)
|.||.++- .|+ +| ==.-.-.|+..|+++||+||++|.......-. ..-.+++...+|.
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~---~~y~gv~l~~i~~ 63 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE---FEYNGVRLVYIPA 63 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC---cccCCeEEEEeCC
Confidence 45677762 233 23 33345678888889999999999876543221 1112477777763
No 281
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.92 E-value=47 Score=31.61 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=41.8
Q ss_pred hhhcccCcceeeccCCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV 421 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l 421 (471)
++...+++ +|+=||=||++.+.+ .++|++.+-.. + +|...+ ++.+++.++|+++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL~~------~~~~~~~~~l~~i 121 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFLTQ------IPREYMTDKLLPV 121 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEeec------cCHHHHHHHHHHH
Confidence 33345666 999999999999975 37888887531 1 343333 7888999999999
Q ss_pred hcc
Q 012080 422 MDK 424 (471)
Q Consensus 422 l~~ 424 (471)
+++
T Consensus 122 ~~g 124 (296)
T PRK04539 122 LEG 124 (296)
T ss_pred HcC
Confidence 975
No 282
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=44.91 E-value=2e+02 Score=26.57 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCC-CeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCC-CCCCCCCCCCCCCChhhHHHHHHHHHHhHHH
Q 012080 31 FLHLSNKLAEKG-HKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHV-DGLPAGAETASDVPMSSINLLVIAMDRCRGQ 108 (471)
Q Consensus 31 ~~~la~~L~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (471)
+-..++.|.+.+ .+|.+.+....-............+-+..+|.+.. .+++...-...+-++ ....
T Consensus 118 ~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPf------------s~e~ 185 (249)
T PF02571_consen 118 YEEAAELLKELGGGRIFLTTGSKNLPPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPF------------SKEL 185 (249)
T ss_pred HHHHHHHHhhcCCCCEEEeCchhhHHHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCC------------CHHH
Confidence 456777777777 66766666665544422111222344445553322 111111000001111 1223
Q ss_pred HHHHHHhCCCcEEEEc-C-ccch----HHHHHHcCCceEEEe
Q 012080 109 VEAVIKAAKPRLLFYD-I-AYWM----ATISKSLSIKCIKYN 144 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D-~-~~~~----~~~A~~~giP~v~~~ 144 (471)
-.+++++.+.|+||+- . .. | ..+|+.+|||++.+.
T Consensus 186 n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 186 NRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEe
Confidence 4567888999999998 5 44 4 348999999999774
No 283
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=44.73 E-value=2.7e+02 Score=26.04 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=29.3
Q ss_pred cccCchhhhcccCcceeeccCC-cchHHHHHhhCCcEEec
Q 012080 340 EWVEQMPILEHSSVGCFVSHCG-FGSMWESLMSDCQIVLV 378 (471)
Q Consensus 340 ~~~pq~~lL~~~~v~~~ItHgG-~~s~~Eal~~GvP~v~~ 378 (471)
++=|+.++|+.++. +|.-.. .|-..||.+.|+|+.++
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 35588999988776 665555 58899999999999765
No 284
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=44.62 E-value=39 Score=30.45 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=32.1
Q ss_pred CCeEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 14 AFPIVMLPW--FAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 14 ~~~il~~~~--~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
|.+|+++++ ++.|-..-...|+..|+++|++|.++=.+
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 457777766 66789999999999999999999888665
No 285
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=44.58 E-value=43 Score=29.74 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+++|.|-..++.|-.+.|+.=|++|+++|.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4688888889999999999999999999999988766543
No 286
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.37 E-value=36 Score=32.50 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=39.9
Q ss_pred hcccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 348 LEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 348 L~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
...+++ +|+=||=||++.+.+. ++|++.+-.. . +|...+ ++.+++.++|++++.
T Consensus 66 ~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G------------~--lGFLt~------~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 66 DSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG------------H--LGFLTE------AYLNQLDEAIDQVLA 123 (305)
T ss_pred ccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC------------C--Cccccc------CCHHHHHHHHHHHHc
Confidence 334566 9999999999999875 7898887531 1 222222 677889999999987
Q ss_pred c
Q 012080 424 K 424 (471)
Q Consensus 424 ~ 424 (471)
+
T Consensus 124 g 124 (305)
T PRK02649 124 G 124 (305)
T ss_pred C
Confidence 5
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=44.29 E-value=2e+02 Score=24.44 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=32.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+++.-.++.|-......+|..|.++|.+|.++..+..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 45667788899999999999999999999999888664
No 288
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.13 E-value=1.8e+02 Score=27.49 Aligned_cols=104 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCc--hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKA--QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
..++.||+++.++..+.+. +|.+..... +++|.++.+... ....++.| +.+..++.. +.
T Consensus 86 ~~~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~g-----Ip~~~~~~~-----~~---- 148 (286)
T PRK06027 86 SAERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVERFG-----IPFHHVPVT-----KE---- 148 (286)
T ss_pred cccCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhC-----CCEEEeccC-----cc----
Confidence 3567899999887744544 344444332 688888776642 33334445 777665411 00
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEec
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~ 145 (471)
+ .......+.+.+++.+||+||.- + ......+-....-.++-+++
T Consensus 149 --~------------~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHp 195 (286)
T PRK06027 149 --T------------KAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHH 195 (286)
T ss_pred --c------------cchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCc
Confidence 0 11123356677888999998888 5 44444444444444454443
No 289
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=44.02 E-value=19 Score=30.52 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=24.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
||.++-.|..| .++|..|.++||+|++...+.
T Consensus 1 KI~ViGaG~~G-----~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWG-----TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHH-----HHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHH-----HHHHHHHHHcCCEEEEEeccH
Confidence 35555444444 478999999999999999986
No 290
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=43.92 E-value=82 Score=28.28 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=20.6
Q ss_pred CCeEEEecCCCcc--CHHHHHHHHHHHHhC
Q 012080 14 AFPIVMLPWFAVG--HMTPFLHLSNKLAEK 41 (471)
Q Consensus 14 ~~~il~~~~~~~G--H~~p~~~la~~L~~r 41 (471)
|++||+--+.-+| ..||...++++|...
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~ 30 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGE 30 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccc
Confidence 4688886543333 799999999999654
No 291
>PRK05636 replicative DNA helicase; Provisional
Probab=43.30 E-value=1e+02 Score=31.88 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=33.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
-|++...|+.|-..-++.+|...+ +.|..|.|++.+.....+
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 355668899999999999998876 458899999888765444
No 292
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=43.16 E-value=2e+02 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 108 QVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
++++++++.++|+||... .+..+|+++|||++.+.
T Consensus 364 ~l~~~i~~~~~dliig~s--~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACAAGADLLITNS--HGRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhhcCCCEEEECc--chHHHHHHcCCCEEEec
Confidence 456778888999999984 23668999999998654
No 293
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=43.07 E-value=2.6e+02 Score=25.40 Aligned_cols=44 Identities=7% Similarity=-0.109 Sum_probs=35.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..-+++.-.|+.|-..-++.++.+-+++|..+.+++.+.....+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 34566777788999999999887766889999999988765443
No 294
>PRK07773 replicative DNA helicase; Validated
Probab=42.87 E-value=1.3e+02 Score=33.62 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=33.8
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~ 57 (471)
|++...|+.|-..-++.+|...+.+ |..|.|++-+.....+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 5666889999999999999998755 7889999988776544
No 295
>PRK09165 replicative DNA helicase; Provisional
Probab=42.86 E-value=1.7e+02 Score=30.19 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=33.0
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEK---------------GHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~r---------------Gh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|-..-++.+|...+.+ |..|.|++-+.....+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 5556889999999999999888653 7889999988776544
No 296
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=42.62 E-value=2.3e+02 Score=27.26 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=34.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
.-|+|+-..+.|=..-+..||..|..+|++|.++..+.++
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 3456667788899999999999999999999999988754
No 297
>PRK08506 replicative DNA helicase; Provisional
Probab=41.93 E-value=2e+02 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=35.3
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
-|++...|+.|=..-++.+|....+.|+.|.|++.+.....+
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 455568899999999999999998889999999988766544
No 298
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=41.91 E-value=48 Score=33.85 Aligned_cols=54 Identities=9% Similarity=0.134 Sum_probs=39.1
Q ss_pred cccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 349 EHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 349 ~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
..+++ +|+=||-||++.+.+. ++|++.+-. . . +|..-+ ++.+++.++|++++.+
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~--------G----~--LGFLt~------i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM--------G----S--LGFMTP------FHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C----C--cceecc------cCHHHHHHHHHHHHcC
Confidence 44666 9999999999999874 567776531 0 2 343322 7889999999999975
No 299
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.82 E-value=44 Score=31.70 Aligned_cols=57 Identities=14% Similarity=0.171 Sum_probs=41.3
Q ss_pred hhhcccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV 421 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l 421 (471)
++...+++ +|+=||=||++.+++. ++|++.+-.. + +|..-+ ++++++.++|+++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFLt~------~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG------------R--LGFLAT------VSKEEIEETIDEL 117 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC------------C--CCcccc------cCHHHHHHHHHHH
Confidence 33345666 9999999999999873 7888877631 1 232222 6788899999999
Q ss_pred hcc
Q 012080 422 MDK 424 (471)
Q Consensus 422 l~~ 424 (471)
+.+
T Consensus 118 ~~g 120 (292)
T PRK01911 118 LNG 120 (292)
T ss_pred HcC
Confidence 975
No 300
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=41.65 E-value=28 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=32.1
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
||++.-.+ .+..+-...+.+.|.++|++|.++.++..+.++.
T Consensus 2 ~I~lgvtG-s~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTG-SIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcC-HHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 55555444 4456677799999999999999999998776664
No 301
>PRK08006 replicative DNA helicase; Provisional
Probab=41.30 E-value=2.1e+02 Score=29.26 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=33.9
Q ss_pred eEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
-|++...|+.|-..-++.+|...+ +.|+.|.|++-+.....+
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 355568899999999999999887 459999999988765544
No 302
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=41.26 E-value=56 Score=31.31 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=28.7
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+++|+++-.|+.| ..+|..|.++||+|+++.....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~~ 39 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSDY 39 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCH
Confidence 344689999767666 4567889999999999987653
No 303
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=41.15 E-value=64 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCCchhh
Q 012080 32 LHLSNKLAEKGHKITILLPRKAQTQ 56 (471)
Q Consensus 32 ~~la~~L~~rGh~Vt~~~~~~~~~~ 56 (471)
..+|..|+++|++|.++..+.....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l 27 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSL 27 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCH
Confidence 4688899999999999998876543
No 304
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=41.09 E-value=1.1e+02 Score=29.29 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 20 LPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 20 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++.++.|-+--...||+.|.++|+++.+++-.+
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 367899999999999999999999999988765
No 305
>PRK07206 hypothetical protein; Provisional
Probab=41.01 E-value=94 Score=31.04 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=23.6
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+|+++-.... ...++++++++|+++.++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 36777754322 3468999999999988887665
No 306
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=40.60 E-value=38 Score=30.94 Aligned_cols=37 Identities=11% Similarity=0.395 Sum_probs=30.3
Q ss_pred CccCH-HHHHHHHHHHHhC--CCeEEEEeCCCchhhhccC
Q 012080 24 AVGHM-TPFLHLSNKLAEK--GHKITILLPRKAQTQLQHF 60 (471)
Q Consensus 24 ~~GH~-~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 60 (471)
+.|+. .-...+++.|+++ |++|.++.++.....+..+
T Consensus 8 Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 8 GAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred CccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhh
Confidence 34444 7899999999999 9999999999887777544
No 307
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=39.96 E-value=1e+02 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=24.5
Q ss_pred CCcEEE-Ec-C-ccchHHHHHHcCCceEEEecch
Q 012080 117 KPRLLF-YD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 117 ~~Dlvi-~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.||+|| .| - ...++.=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 599955 55 4 8888889999999999886443
No 308
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=39.90 E-value=2.6e+02 Score=24.55 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=55.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCC--eEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGH--KITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh--~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (471)
+||+++..+..+= +.++.+.+.+.++ +|.++.++... .+.++.+ +.+..++.. .+.
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~g-----ip~~~~~~~---~~~------- 62 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAG-----IPTFVLSLK---DFP------- 62 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcC-----CCEEEECcc---ccC-------
Confidence 3688877654433 4466677776655 66665555321 2233334 665544310 000
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecc
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
+ .+.....+.+.+++.++|++|+- + ......+-......++.++++
T Consensus 63 ~------------~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiHps 110 (190)
T TIGR00639 63 S------------REAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIHPS 110 (190)
T ss_pred c------------hhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEeCC
Confidence 0 11123457778888999998887 5 544444555555555665554
No 309
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=39.43 E-value=31 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=21.5
Q ss_pred EecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 19 MLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 19 ~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+++..+.|.+ -..||+++..+|++||++..+.
T Consensus 22 ~ItN~SSG~~--G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 22 FITNRSSGKM--GAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEEES--SHH--HHHHHHHHHHTT-EEEEEE-TT
T ss_pred EecCCCcCHH--HHHHHHHHHHCCCEEEEEecCc
Confidence 3444445544 4678999999999999999885
No 310
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=39.17 E-value=42 Score=30.92 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 26 GHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 26 GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|=-.-+-.|+++|+++||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445567789999999999999999886
No 311
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=39.10 E-value=2.4e+02 Score=23.99 Aligned_cols=115 Identities=12% Similarity=0.102 Sum_probs=57.6
Q ss_pred ecCCCccCHHHH-HHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCC----CCCCCCCCCCCCCChhh
Q 012080 20 LPWFAVGHMTPF-LHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHV----DGLPAGAETASDVPMSS 94 (471)
Q Consensus 20 ~~~~~~GH~~p~-~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~ 94 (471)
+.+...+.+..+ -.+|..|.++|++|.=+........-. .........++.-.. ..+..+...
T Consensus 4 v~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~----~~~~m~l~dl~~G~~~~IsQ~LG~gs~g-------- 71 (159)
T PF10649_consen 4 VVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDG----GRCDMDLRDLPSGRRIRISQDLGPGSRG-------- 71 (159)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC----CccceEEEECCCCCEEEEeeccCCCCcc--------
Confidence 444455666664 467999999999987665443211110 000133333321000 111111110
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C---ccch------HHHHHHcCCceEEEecch
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I---AYWM------ATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~---~~~~------~~~A~~~giP~v~~~~~~ 147 (471)
-++-..........++..|++ .+|++|.. | ...| ...|-..|||+++..+..
T Consensus 72 CrLD~~~La~A~~~l~~al~~-~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 72 CRLDPGALAEASAALRRALAE-GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred cccCHHHHHHHHHHHHHHHhc-CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 111122233334455566654 69999998 7 2222 234567899999776553
No 312
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=39.09 E-value=86 Score=28.95 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=37.9
Q ss_pred CCCCeEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 12 SSAFPIVMLP-WFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 12 ~~~~~il~~~-~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
++.+|-.|+- -++.|-..-...||-.|+.-+|.|.++++++...
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 6677888884 4888999999999999999999999999987554
No 313
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=39.06 E-value=2.4e+02 Score=24.80 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=31.1
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.+.-.++.|=..-++.++..+.++|..|.|+.++.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 444566888999999999999999999999999986
No 314
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=38.66 E-value=1.9e+02 Score=31.05 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 109 VEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
..+.|++.+||++|+= + ......+-......++.++++..
T Consensus 67 ~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~slL 108 (660)
T PRK08125 67 WVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGSLL 108 (660)
T ss_pred HHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCCcc
Confidence 4456778899999887 5 55555566666666788887744
No 315
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=38.48 E-value=1.1e+02 Score=31.36 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=69.7
Q ss_pred EEeccccCchh---hhcccCcceeec--cCCcch-HHHHHhhCC----cEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 336 VVCGEWVEQMP---ILEHSSVGCFVS--HCGFGS-MWESLMSDC----QIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 336 v~~~~~~pq~~---lL~~~~v~~~It--HgG~~s-~~Eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
+.+.+.+|+.+ ++.-++| ++|| .-|+|- ..|.++++. |+|.--+.+ | .+ .+.-++.+.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~-~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AV-ELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hh-hcCCCEEECC--
Confidence 45666778665 5556777 3343 348884 459999988 444433221 1 14 6666888888
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
.+.++++++|.+.|+.+ .++-++|.+++.+.++... ...=.+.|++.+..+
T Consensus 433 ---~d~~~~A~ai~~AL~m~---~~Er~~R~~~l~~~v~~~d-~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMP---KAEQQARMREMFDAVNYYD-VQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHhhhc
Confidence 88999999999999875 1234556666666554442 334456666666543
No 316
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.44 E-value=43 Score=31.54 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=37.1
Q ss_pred ccCcceeeccCCcchHHHHHh---hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLM---SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|.-||-||+++++. .++|++.+|.. .+ |..-. +.++++.+++++++.+
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G------------~l--GFl~~------~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMG------------TL--GFLTE------VEPEETFFALSRLLEG 112 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCC------------CC--Ccccc------CCHHHHHHHHHHHHcC
Confidence 3455 999999999999984 35688888841 11 21111 5677888888888865
No 317
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.43 E-value=52 Score=31.24 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=40.1
Q ss_pred hhhcccCcceeeccCCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV 421 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l 421 (471)
++...+++ +|+=||=||++.++. +++|++.+-.. . +|..-+ ++++++.++++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G------------~--lGFl~~------~~~~~~~~~l~~i 116 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG------------N--LGFLTD------LDPDNALQQLSDV 116 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC------------C--CCcccc------cCHHHHHHHHHHH
Confidence 33345666 999999999999985 36787776531 1 232222 6788899999999
Q ss_pred hcc
Q 012080 422 MDK 424 (471)
Q Consensus 422 l~~ 424 (471)
+++
T Consensus 117 ~~g 119 (292)
T PRK03378 117 LEG 119 (292)
T ss_pred HcC
Confidence 875
No 318
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=38.41 E-value=84 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=17.2
Q ss_pred CeEEEecCCCcc--CHHHHHHHHHHHHh
Q 012080 15 FPIVMLPWFAVG--HMTPFLHLSNKLAE 40 (471)
Q Consensus 15 ~~il~~~~~~~G--H~~p~~~la~~L~~ 40 (471)
++|++--++-+| -.||...+++.|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 367776443333 58999999999975
No 319
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=38.32 E-value=2.7e+02 Score=26.66 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=57.2
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+.++++|+++ +.+++-+...|.+++..-..... .+ ++ ..+.......++|+.+++
T Consensus 137 ~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~~~-------~~-~~--------~~~~~~~~l~e~l~~aDv 193 (312)
T PRK15469 137 FTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSRKS-------WP-GV--------QSFAGREELSAFLSQTRV 193 (312)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCCCC-------CC-Cc--------eeecccccHHHHHhcCCE
Confidence 558899999986 45556556678876543211000 00 00 011112334678999998
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcce-EEeecccCCcccHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVA-VEVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~t~~~l~~ai~ 419 (471)
++.|.-.+.-.+. ..|+..+. .++=| +.+...+.+.+..+.|.++++
T Consensus 194 --vv~~lPlt~~T~~----------------li~~~~l~-~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 194 --LINLLPNTPETVG----------------IINQQLLE-QLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred --EEECCCCCHHHHH----------------HhHHHHHh-cCCCCcEEEECCCccccCHHHHHHHHh
Confidence 8888766543332 33455555 55543 444444445566666666665
No 320
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=38.31 E-value=2.5e+02 Score=25.90 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=30.1
Q ss_pred ccchhhHHHHHHhhcceEEeecccCCc-ccHHHHHHHHH
Q 012080 382 GDQILNTRLLAEELKVAVEVEREENGW-FSKESLCKAIK 419 (471)
Q Consensus 382 ~DQ~~na~~v~~~~G~G~~l~~~~~~~-~t~~~l~~ai~ 419 (471)
+.+.+|...++ ++++...+.++..+. -+.+.+..|.+
T Consensus 183 fs~~~n~all~-q~~id~vItK~SG~~Gg~~~Ki~aA~e 220 (257)
T COG2099 183 FSEEDNKALLE-QYRIDVVVTKNSGGAGGTYEKIEAARE 220 (257)
T ss_pred cChHHHHHHHH-HhCCCEEEEccCCcccCcHHHHHHHHH
Confidence 67889999999 999999999875444 67777777654
No 321
>PLN02470 acetolactate synthase
Probab=37.76 E-value=1.1e+02 Score=32.24 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred EeCccccCCH--HHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhC-CCcEEeccccCc--hhhh------
Q 012080 280 AFGSQIILEK--KQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQ--MPIL------ 348 (471)
Q Consensus 280 s~Gs~~~~~~--~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq--~~lL------ 348 (471)
+|||....+. ...+.+++.|++.|.+.+|-+.++.. ..+.+... .+++.+. .+-+ ....
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~---------~~l~dal~~~~~i~~i-~~rhE~~A~~~Adgya 71 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS---------MEIHQALTRSNCIRNV-LCRHEQGEVFAAEGYA 71 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc---------HHHHHHHhccCCceEE-EeccHHHHHHHHHHHH
Confidence 4666655322 33466888888888888888754211 11222221 1233332 1111 1111
Q ss_pred -cccCcceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 349 -EHSSVGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 349 -~~~~v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
.+-+++++++|.|- +.+.+|.+.++|||++.
T Consensus 72 r~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 72 KASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 12345558888885 47899999999999995
No 322
>PRK04940 hypothetical protein; Provisional
Probab=37.44 E-value=90 Score=27.22 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 117 KPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 117 ~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
++++||.. + -++|..+|.+.|+|.|.+.|..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46788888 6 9999999999999999887664
No 323
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=37.43 E-value=1.9e+02 Score=29.85 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=24.7
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~ 52 (471)
+|||++-.+++.| +|++.|++. |++|..+-...
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~ 35 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYL 35 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCC
Confidence 4899988887777 578888776 89887775433
No 324
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=37.43 E-value=3.3e+02 Score=25.02 Aligned_cols=39 Identities=21% Similarity=0.082 Sum_probs=31.2
Q ss_pred eEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+|.++ .-++.|-......||..|+++|++|.++-.+...
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 44444 5578899999999999999999999988666543
No 325
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=37.21 E-value=88 Score=30.90 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.7
Q ss_pred cceeeccCCcchHHHHHhh-----------------CCcEEeccccccchhhHHHHHHhhcceEEee-cccCCcccHHHH
Q 012080 353 VGCFVSHCGFGSMWESLMS-----------------DCQIVLVPHLGDQILNTRLLAEELKVAVEVE-REENGWFSKESL 414 (471)
Q Consensus 353 v~~~ItHgG~~s~~Eal~~-----------------GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~t~~~l 414 (471)
..+++|.||..+.+-|+.+ +.|+|.++-.. ++-+.+.+. -+|+|+..- .++.+.+..++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~-~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAAR-ILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHH-HTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcc-eeeeEEEEecCCcchhhhHHHh
Confidence 5679999998888777633 35677777433 566667777 999995444 333467899999
Q ss_pred HHHHHHHhcc
Q 012080 415 CKAIKCVMDK 424 (471)
Q Consensus 415 ~~ai~~ll~~ 424 (471)
+++|++...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887765
No 326
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=37.14 E-value=41 Score=26.56 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=25.1
Q ss_pred hhhhcccCcceeeccC---CcchHHHH---HhhCCcEEeccc
Q 012080 345 MPILEHSSVGCFVSHC---GFGSMWES---LMSDCQIVLVPH 380 (471)
Q Consensus 345 ~~lL~~~~v~~~ItHg---G~~s~~Ea---l~~GvP~v~~P~ 380 (471)
...+..|++-+++-.+ +.||..|. ...|+|++++-.
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 3455667765555555 88999995 678999998864
No 327
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=36.96 E-value=86 Score=27.63 Aligned_cols=44 Identities=5% Similarity=-0.117 Sum_probs=31.9
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEec
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
++.....+.+.+++.++|.|++= . .+.|..+|..+|+|++...-
T Consensus 35 l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK 81 (191)
T TIGR01744 35 MQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARK 81 (191)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEe
Confidence 33344455555566689999865 3 78888899999999997753
No 328
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=36.73 E-value=3e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCCeEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLP-WFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~-~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
...+|+++- .|..|. .+|..|.++||+|+++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 456788875 565554 57899999999999988643
No 329
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=36.56 E-value=63 Score=28.91 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
.+..||++.-.+ .--.+-...|.+.|. +||+|.++.++....++..
T Consensus 17 ~~~k~IllgVtG-SIAAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 17 PRKPRILLAASG-SVAAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCCEEEEEEeC-HHHHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 345677776444 335666778999997 5999999999998877743
No 330
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=36.41 E-value=2.2e+02 Score=22.72 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEc
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYD 124 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D 124 (471)
.......+.+++++.+||+|++-
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t~ 107 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEC
Confidence 34456778889999999998876
No 331
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=36.41 E-value=1.3e+02 Score=27.16 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=20.1
Q ss_pred CCeEEEecCCCcc--CHHHHHHHHHHHHh
Q 012080 14 AFPIVMLPWFAVG--HMTPFLHLSNKLAE 40 (471)
Q Consensus 14 ~~~il~~~~~~~G--H~~p~~~la~~L~~ 40 (471)
|.+||+--+.-+| ..||...++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 4578886554443 79999999999954
No 332
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=36.17 E-value=2.7e+02 Score=29.24 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=34.2
Q ss_pred cCCcch-HHHHHh-hC--CcEEec--c-ccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 359 HCGFGS-MWESLM-SD--CQIVLV--P-HLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 359 HgG~~s-~~Eal~-~G--vP~v~~--P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
+||.|| ++|.+. +| +|++.+ | .|.||-.-...+. +.| ++++.|.+.|.+.+.
T Consensus 565 ~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~-~~g------------Ld~~~i~~~i~~~l~ 623 (627)
T COG1154 565 DGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLA-ELG------------LDAEGIARRILEWLK 623 (627)
T ss_pred cccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHH-HcC------------CCHHHHHHHHHHHHh
Confidence 889875 566654 34 666544 4 3667666666666 332 788888888887774
No 333
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.14 E-value=85 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.038 Sum_probs=37.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
.+|++.+..+-+|-.=-.-++..|..+|++|..++.....+.+
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4788889999999999999999999999999999887654433
No 334
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=36.10 E-value=75 Score=31.60 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHhHHHHHHHHHhCCCcEEEEc--Ccc------chHH---HHHHcCCceEEEe
Q 012080 97 LLVIAMDRCRGQVEAVIKAAKPRLLFYD--IAY------WMAT---ISKSLSIKCIKYN 144 (471)
Q Consensus 97 ~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~~~------~~~~---~A~~~giP~v~~~ 144 (471)
++....+.....+.+.+++.+||++|+- |.. ||.. +.++++||.+.-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 56 FFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4555566677889999999999999998 332 2211 3467999998654
No 335
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=36.04 E-value=91 Score=28.24 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=19.4
Q ss_pred CCeEEEecCCCcc--CHHHHHHHHHHHHh
Q 012080 14 AFPIVMLPWFAVG--HMTPFLHLSNKLAE 40 (471)
Q Consensus 14 ~~~il~~~~~~~G--H~~p~~~la~~L~~ 40 (471)
|++||+--++-+| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 4678876553333 69999999999853
No 336
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=36.03 E-value=62 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=28.9
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
|.+.-=|+.|-..-...||..|+++|++|.++=.+
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 44444588899999999999999999998888444
No 337
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.95 E-value=76 Score=31.55 Aligned_cols=48 Identities=8% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHHHHhHHHHHHHHHhCCCcEEEEc--Ccc------chHH---HHHHcCCceEEEe
Q 012080 97 LLVIAMDRCRGQVEAVIKAAKPRLLFYD--IAY------WMAT---ISKSLSIKCIKYN 144 (471)
Q Consensus 97 ~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~~~------~~~~---~A~~~giP~v~~~ 144 (471)
++....+.....+.+.+++.+||++|+- |.. ||.. +.++++||.+.-.
T Consensus 56 Yf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 56 FFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 4455566677889999999999999998 332 2211 4467999998654
No 338
>PLN02293 adenine phosphoribosyltransferase
Probab=35.87 E-value=1e+02 Score=27.01 Aligned_cols=43 Identities=5% Similarity=-0.055 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEe
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~ 144 (471)
++.....+.+.+++.++|+|++= . .+.|..+|..+|+|++...
T Consensus 47 ~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 47 FKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 33445556666666689998876 3 7788999999999988543
No 339
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=35.65 E-value=1.8e+02 Score=27.91 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=63.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+..+++|.++ +++++-++..|.+++.. .+.. .+. ..+ ..+++..++|+.+++
T Consensus 146 ktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~-d~~~--------~~~-------~~~---~~~~~l~ell~~sDv 199 (311)
T PRK08410 146 KKWGIIGLGTIG-------KRVAKIAQAFGAKVVYY-STSG--------KNK-------NEE---YERVSLEELLKTSDI 199 (311)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhcCCEEEEE-CCCc--------ccc-------ccC---ceeecHHHHhhcCCE
Confidence 669999999986 34444444568887654 2110 000 001 125577899999998
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceEEe-ecccCCcccHHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLG--DQILNTRLLAEELKVAVEV-EREENGWFSKESLCKAIKC 420 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l-~~~~~~~~t~~~l~~ai~~ 420 (471)
++-|+ |+.. ....|+..+. .++=|..+ ...+.+.+..+.|.+++++
T Consensus 200 --v~lh~------------------Plt~~T~~li~~~~~~-~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 --ISIHA------------------PLNEKTKNLIAYKELK-LLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred --EEEeC------------------CCCchhhcccCHHHHH-hCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 77775 5543 4577888888 88876444 4445567888888888764
No 340
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=35.58 E-value=1.3e+02 Score=26.91 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred hhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEE
Q 012080 262 ERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLI 308 (471)
Q Consensus 262 ~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~ 308 (471)
+.+.+|+... .+.+.||-+-|...-.....++..++|+..|..+.=
T Consensus 22 ~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~ 67 (224)
T COG3340 22 PFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSE 67 (224)
T ss_pred HHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeee
Confidence 3455666554 357999999888765556678888999988887653
No 341
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=35.54 E-value=39 Score=26.94 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 28 MTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 28 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
+.|++.|.-.+.-|||++|++.|..+.+.+.
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~ 39 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVD 39 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhcccc
Confidence 5688888888999999999999999887553
No 342
>PRK06270 homoserine dehydrogenase; Provisional
Probab=35.37 E-value=2.9e+02 Score=26.85 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=36.6
Q ss_pred CchhhhcccCcceeec------cCC---cchHHHHHhhCCcEEe---ccccccchhhHHHHHHhhcceEEee
Q 012080 343 EQMPILEHSSVGCFVS------HCG---FGSMWESLMSDCQIVL---VPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 343 pq~~lL~~~~v~~~It------HgG---~~s~~Eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
...++|.++++.++|- |+| ..-+.++|.+|+++|+ -|+...-..-....+ +.|+....+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~-~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAK-KNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHH-HcCCEEEEe
Confidence 4466776655555665 443 4456899999999999 586443223333344 667766654
No 343
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.27 E-value=63 Score=30.00 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=37.6
Q ss_pred ccCcceeeccCCcchHHHHHh-hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLM-SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~-~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
++++ +|+=||=||++.+++ +++|++.+-.. + +|...+ ++.+++.++++++++.
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G------------~--lGfl~~------~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG------------R--LGFLSS------YTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC------------C--Cccccc------cCHHHHHHHHHHHHcC
Confidence 3455 999999999999987 57777766521 1 232222 6778888999988875
No 344
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.25 E-value=1.2e+02 Score=26.69 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEec
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLT 73 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (471)
.-+..+|+.|.+.|+++ +++......++..| +.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~G-----I~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKEAG-----IPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHHcC-----CeEEEhh
Confidence 34789999999999997 35555666777666 6555543
No 345
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.11 E-value=68 Score=30.40 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=33.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++|+|.-=|+.|-..-...||..|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 468888889999999999999999999999988765543
No 346
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=35.07 E-value=2.7e+02 Score=23.23 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=31.1
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|.+.-.++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566667888999999999999999999998887664
No 347
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.03 E-value=93 Score=24.81 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=32.9
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
||++..-++.|-......+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999888776
No 348
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.87 E-value=59 Score=33.67 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++++.|++.+||+|+.+. ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~--~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ--MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc--hhhHHHHHhCCCEEEee
Confidence 4456778888999999993 23446899999998765
No 349
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=34.72 E-value=1.5e+02 Score=25.21 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=25.3
Q ss_pred cCchhhh-cccCcceeeccCCcchHH---HHHhhCCcEEeccc
Q 012080 342 VEQMPIL-EHSSVGCFVSHCGFGSMW---ESLMSDCQIVLVPH 380 (471)
Q Consensus 342 ~pq~~lL-~~~~v~~~ItHgG~~s~~---Eal~~GvP~v~~P~ 380 (471)
.+...++ ..++. .++--||.||+- |++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda-~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADV-VVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCE-EEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3444444 34443 455568888765 46889999999984
No 350
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=34.64 E-value=1.4e+02 Score=26.77 Aligned_cols=26 Identities=12% Similarity=0.318 Sum_probs=18.9
Q ss_pred CeEEEecCCCcc--CHHHHHHHHHHHHh
Q 012080 15 FPIVMLPWFAVG--HMTPFLHLSNKLAE 40 (471)
Q Consensus 15 ~~il~~~~~~~G--H~~p~~~la~~L~~ 40 (471)
|+|++--++-+| ..||...+++.|..
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~ 28 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDG 28 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccc
Confidence 367776553333 79999999999965
No 351
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=34.21 E-value=1.3e+02 Score=21.78 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.-.+.+|..|++.|.+||++....
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHHhCcEEEEEeccc
Confidence 346889999999999999998765
No 352
>PRK09620 hypothetical protein; Provisional
Probab=34.10 E-value=59 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=21.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 21 PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 21 ~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+..+.|-+- ..||++|.++|++|+++....
T Consensus 24 tN~SSGfiG--s~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 24 TNMAKGTIG--RIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred cCCCcCHHH--HHHHHHHHHCCCeEEEEeCCC
Confidence 333445443 678999999999999987543
No 353
>PLN02928 oxidoreductase family protein
Probab=34.07 E-value=1.7e+02 Score=28.62 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=62.3
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+..+++|.++ +.+++.+...|.+++..-+...........+|......... ....+....++|+.+++
T Consensus 160 ktvGIiG~G~IG-------~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~ell~~aDi 229 (347)
T PLN02928 160 KTVFILGYGAIG-------IELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD---EKGGHEDIYEFAGEADI 229 (347)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc---ccCcccCHHHHHhhCCE
Confidence 559999999986 45555556678887654221000000000000000000000 01135566789999999
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcce-EEeecccCCcccHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVA-VEVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~t~~~l~~ai~ 419 (471)
++.|+-.+.- .....|+..+. .++=| +.+...+.+.+..+.|.++++
T Consensus 230 --Vvl~lPlt~~----------------T~~li~~~~l~-~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 230 --VVLCCTLTKE----------------TAGIVNDEFLS-SMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred --EEECCCCChH----------------hhcccCHHHHh-cCCCCeEEEECCCccccCHHHHHHHHH
Confidence 8888765432 23455666666 66654 444444445677777777766
No 354
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.06 E-value=61 Score=30.38 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=38.1
Q ss_pred ccCcceeeccCCcchHHHHHhh-CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLMS-DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~~-GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|+=||-||++.++.. ..|++.+-. . + +|..-+ ++.+++.++|++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--G----------~--lGFL~~------~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--G----------G--LGFLTE------IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--C----------C--CccCcc------cCHHHHHHHHHHHHcC
Confidence 4566 9999999999999884 556665542 0 1 232222 7889999999999975
No 355
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=34.05 E-value=1.4e+02 Score=22.39 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.6
Q ss_pred cCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 21 PWFAVG----HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 21 ~~~~~G----H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
|+-+.| +...+..|-..|++.||+|.+.-++..
T Consensus 13 PY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~ 49 (88)
T PF15092_consen 13 PYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDW 49 (88)
T ss_pred CchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccc
Confidence 666666 678899999999999999999877764
No 356
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=34.04 E-value=5.4e+02 Score=27.86 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=28.4
Q ss_pred eEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012080 16 PIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLP 50 (471)
Q Consensus 16 ~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 50 (471)
.|++. +....|-..-.+.|++.|.++|.+|-++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 45555 445679999999999999999999988754
No 357
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.04 E-value=64 Score=27.38 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=31.2
Q ss_pred CccCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 6 SCSSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 6 ~~~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
++....-+..+|+++-.+. -....++.|.+.|++||++.++...+
T Consensus 5 ~P~~l~l~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~~~~~ 49 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPEICKE 49 (157)
T ss_pred cceEEEcCCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCccCHH
Confidence 3344445566888876553 34778999999999999997554443
No 358
>PRK05748 replicative DNA helicase; Provisional
Probab=33.97 E-value=3.5e+02 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.5
Q ss_pred eEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...|+.|=..-++.+|...+ +.|+.|.|++.+.....+
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 466668899999999999999886 459999999988766544
No 359
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=33.96 E-value=2e+02 Score=28.43 Aligned_cols=60 Identities=22% Similarity=0.358 Sum_probs=37.1
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-.|++|.++ ..+++-++..|.+++.. .+. ..+. ... ..+.+..++|+.+++
T Consensus 117 ktvGIIG~G~IG-------~~vA~~l~a~G~~V~~~-dp~---------~~~~------~~~---~~~~~L~ell~~sDi 170 (378)
T PRK15438 117 RTVGIVGVGNVG-------RRLQARLEALGIKTLLC-DPP---------RADR------GDE---GDFRSLDELVQEADI 170 (378)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEE-CCc---------cccc------ccc---cccCCHHHHHhhCCE
Confidence 568899999986 44555555678887654 210 0000 000 136678889999998
Q ss_pred ceeeccCC
Q 012080 354 GCFVSHCG 361 (471)
Q Consensus 354 ~~~ItHgG 361 (471)
++-|.-
T Consensus 171 --I~lh~P 176 (378)
T PRK15438 171 --LTFHTP 176 (378)
T ss_pred --EEEeCC
Confidence 776653
No 360
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=33.85 E-value=75 Score=30.18 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=34.2
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+|..|.|..-|+.|-..-...||..|++.|++|.++-.+.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 35667777766888999999999999999999999985444
No 361
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=33.83 E-value=90 Score=29.17 Aligned_cols=39 Identities=5% Similarity=-0.004 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEec
Q 012080 107 GQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
..+.+.+++.++|+|++= . .+.|..+|..+|+|++...-
T Consensus 118 ~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK 159 (268)
T TIGR01743 118 KILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRK 159 (268)
T ss_pred HHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEE
Confidence 344445556689999876 3 88899999999999997754
No 362
>PRK00784 cobyric acid synthase; Provisional
Probab=33.80 E-value=5.4e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.7
Q ss_pred eEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012080 16 PIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLP 50 (471)
Q Consensus 16 ~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 50 (471)
.|++. +-...|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 35554 446679999999999999999999886643
No 363
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=33.59 E-value=80 Score=26.87 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=20.4
Q ss_pred cceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
..++++|.|- +.+.||...++|||++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3336666663 47789999999999995
No 364
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.55 E-value=79 Score=29.53 Aligned_cols=53 Identities=19% Similarity=0.364 Sum_probs=37.3
Q ss_pred cCcceeeccCCcchHHHHHhh-----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 351 SSVGCFVSHCGFGSMWESLMS-----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 351 ~~v~~~ItHgG~~s~~Eal~~-----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+++ +|+=||=||++.++.. .+|++.+-.-+ .+|..-+ ++.+++.+++++++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL~~------~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFYCD------FHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEccc------CCHHHHHHHHHHHHcC
Confidence 455 9999999999999874 56666654311 1333322 6788899999998865
No 365
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=33.30 E-value=68 Score=31.48 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhH-----HHhhCCCcEEeccccCch---hhhcccCcceeecc
Q 012080 288 EKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGF-----AERTKGRGVVCGEWVEQM---PILEHSSVGCFVSH 359 (471)
Q Consensus 288 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~~~~~nv~~~~~~pq~---~lL~~~~v~~~ItH 359 (471)
+...+..++++++..+.++.+-+..+.....+...++... ....+.-.+.+.+|+||. .||-.|++ -+=-
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--NfVR 270 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--NFVR 270 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--ceEe
Confidence 3445666777777666666665554433222211121000 000112246677899985 59999997 3333
Q ss_pred CCcchHHHHHhhCCcEEecc
Q 012080 360 CGFGSMWESLMSDCQIVLVP 379 (471)
Q Consensus 360 gG~~s~~Eal~~GvP~v~~P 379 (471)
|-=|+.-|..+|+|.|==.
T Consensus 271 -GEDSfVRAqwAgkPFvWhI 289 (374)
T PF10093_consen 271 -GEDSFVRAQWAGKPFVWHI 289 (374)
T ss_pred -cchHHHHHHHhCCCceEec
Confidence 7789999999999998433
No 366
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=33.25 E-value=3.4e+02 Score=27.27 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=34.2
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...|+.|=..-++.+|..++. .|+.|.+++.+.....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 3555677899999999999998875 59999999998766544
No 367
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.21 E-value=77 Score=25.70 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.2
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 26 GHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 26 GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
-.+--.+-+...|.++|++||+++++..-
T Consensus 16 ~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 45666778899999999999999998743
No 368
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.13 E-value=3.3e+02 Score=25.26 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEecc
Q 012080 105 CRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
....+.+.+++.+..+|+++ + ...+-.+|+..|+|.+.+.+.
T Consensus 205 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 205 DLKRLIDLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 35567778899999999999 3 444556899999998877544
No 369
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=33.09 E-value=71 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=31.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.|.|.-=|+.|-..-+..||..|+++|++|.++=.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5677767899999999999999999999988874443
No 370
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=32.93 E-value=87 Score=28.39 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.3
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCe
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHK 44 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~ 44 (471)
.-|+|.-.|..|-......|.+.|+++||+
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 446666779999999999999999999986
No 371
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.81 E-value=2.4e+02 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.0
Q ss_pred cceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
.+++++|.|- +.+.+|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 4448888874 47889999999999995
No 372
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.75 E-value=76 Score=30.20 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred ccCcceeeccCCcchHHHHHh----hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|+=||-||+++++. .++|++.+... + +|...+ ++.+++.++|++++..
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lGFl~~------~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LGFLTD------IRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cccccc------CCHHHHHHHHHHHHcC
Confidence 4566 999999999999975 36788887741 2 232222 7789999999999975
No 373
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=32.71 E-value=1.1e+02 Score=26.96 Aligned_cols=38 Identities=11% Similarity=-0.025 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEec
Q 012080 108 QVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
.+.+.++..++|.|+.= . .+.|..+|..+|+|++...-
T Consensus 64 ~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK 104 (187)
T PRK13810 64 QAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRK 104 (187)
T ss_pred HHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEec
Confidence 34445556689999887 4 78888899999999986643
No 374
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.43 E-value=78 Score=32.87 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++++.+++.+||+||.+. ....+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~--~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ--MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc--hHHHHHHHcCCCEEEec
Confidence 3566777888999999884 23558899999998665
No 375
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=32.38 E-value=75 Score=32.92 Aligned_cols=36 Identities=25% Similarity=0.304 Sum_probs=28.1
Q ss_pred HHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEec
Q 012080 108 QVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~ 145 (471)
++++.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 355 ei~~~i~~~~pdliiG~~--~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ--MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHhcCCCEEEECh--HHHHHHHHcCCCEEEecC
Confidence 566677888999999994 235578999999986654
No 376
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=32.22 E-value=3.3e+02 Score=27.56 Aligned_cols=32 Identities=3% Similarity=0.109 Sum_probs=24.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLP 50 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 50 (471)
++|||++-.+++.| +|++.|++.|++|..+..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 35899987777666 578899888987777644
No 377
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=32.16 E-value=96 Score=24.60 Aligned_cols=37 Identities=11% Similarity=-0.103 Sum_probs=31.2
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++..+..+..|..-..-++..|.++|++|.++.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCC
Confidence 5666777788999999999999999999998876544
No 378
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.14 E-value=60 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++.+++++.+||++|.... +..+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~--~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK--EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc--chhhhhhcCCCeEeCC
Confidence 46677888889999999932 4567999999997553
No 379
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.11 E-value=3.6e+02 Score=23.90 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=32.0
Q ss_pred CCeEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
|.++-|+.. ...|-..-++.-++....+|-+|.++.+.-.
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 456666644 4458999999999999999999999988754
No 380
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=32.02 E-value=90 Score=25.46 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=25.0
Q ss_pred eEEEe-cCCCcc--CHHHHHHHHHHHHhCCCeE-EEEeCCC
Q 012080 16 PIVML-PWFAVG--HMTPFLHLSNKLAEKGHKI-TILLPRK 52 (471)
Q Consensus 16 ~il~~-~~~~~G--H~~p~~~la~~L~~rGh~V-t~~~~~~ 52 (471)
|++|+ ..+-+| ...-.+.+|+.+.+.||+| +++-..+
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~D 42 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQD 42 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehH
Confidence 55554 333344 5566888999999999994 6665554
No 381
>PLN02285 methionyl-tRNA formyltransferase
Probab=32.00 E-value=3.3e+02 Score=26.44 Aligned_cols=40 Identities=5% Similarity=0.049 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+.+.+++.+||++|+= + ......+-.....-++.++++.
T Consensus 84 ~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL 125 (334)
T PLN02285 84 DFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL 125 (334)
T ss_pred HHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc
Confidence 34456778899998887 5 5445555555555667777664
No 382
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=31.92 E-value=3.2e+02 Score=26.21 Aligned_cols=98 Identities=12% Similarity=0.197 Sum_probs=57.3
Q ss_pred eEEEecCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCC-CCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 16 PIVMLPWFAVG-----HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNL-HPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 16 ~il~~~~~~~G-----H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
-|++.|+.+.| ...-+.+|++.|.++|.+|.+.+++..++..+.... .+. ..+.+. ..
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~--~~~~l~--------------g~ 239 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPG--ELRNLA--------------GE 239 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCc--ccccCC--------------CC
Confidence 45555554332 344688999999988999998888766554433210 000 000000 00
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
....++..+++. -|++|+- ......+|..+|+|+|.+...
T Consensus 240 --------------~sL~el~ali~~--a~l~I~~-DSGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 240 --------------TSLDEAVDLIAL--AKAVVTN-DSGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred --------------CCHHHHHHHHHh--CCEEEee-CCHHHHHHHHcCCCEEEEECC
Confidence 013345555653 5888876 223467899999999988654
No 383
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=31.72 E-value=3.8e+02 Score=23.97 Aligned_cols=40 Identities=3% Similarity=0.088 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+.+.+++.+||++|+- + ......+-+.....++.++++.
T Consensus 69 ~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL 110 (207)
T PLN02331 69 ELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHPAL 110 (207)
T ss_pred HHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEEEEeCcc
Confidence 45566888899999987 5 5555555566655667666553
No 384
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=31.71 E-value=3e+02 Score=27.37 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=26.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG-HKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG-h~Vt~~~~~~ 52 (471)
|.+|+++-.+..|+ .+|..|+++| ++||++.-..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCH
Confidence 45788876565554 5799999999 9999998764
No 385
>PRK06932 glycerate dehydrogenase; Provisional
Probab=31.65 E-value=2.1e+02 Score=27.49 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+..+++|.++ +++++.++..|.+++.. ... .... ....+.+..++|+.+|+
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~---------~~~~----------~~~~~~~l~ell~~sDi 200 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHK---------GASV----------CREGYTPFEEVLKQADI 200 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCC---------cccc----------cccccCCHHHHHHhCCE
Confidence 569999999986 44555555568887643 210 0000 01125677899999999
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE-eecccCCcccHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVE-VEREENGWFSKESLCKAIK 419 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~t~~~l~~ai~ 419 (471)
++-|+-.+.- .....|+..+. .++=|.. +...+.+.+..+.|.++++
T Consensus 201 --v~l~~Plt~~----------------T~~li~~~~l~-~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 201 --VTLHCPLTET----------------TQNLINAETLA-LMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred --EEEcCCCChH----------------HhcccCHHHHH-hCCCCeEEEECCCccccCHHHHHHHHH
Confidence 8888654322 24566777777 7776543 3344445677777777776
No 386
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=31.63 E-value=79 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=30.9
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.|.+..=|+.|-..-+..||..|+++|++|.++=-+
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 577776789999999999999999999999887433
No 387
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=31.51 E-value=1.6e+02 Score=19.67 Aligned_cols=49 Identities=8% Similarity=0.154 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC-CchhHHHHHHHH
Q 012080 410 SKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP-GFVSGYIDKFVQ 458 (471)
Q Consensus 410 t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~-~~~~~~i~~~~~ 458 (471)
|.++|+++|+++|.+.+=+--+.|+=-++|.+.+.-. ......|..++.
T Consensus 1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~~K~~I~~~I~ 50 (54)
T PF08766_consen 1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGVDLSSRKKFIKELID 50 (54)
T ss_dssp -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 4678889999998764222223455555555555222 333345555543
No 388
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=31.44 E-value=83 Score=29.12 Aligned_cols=38 Identities=29% Similarity=0.236 Sum_probs=32.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..|.|+.-||.|-..-+..||..|+++|++|.++=.+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 35777766889999999999999999999998885443
No 389
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=31.23 E-value=79 Score=31.75 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 110 EAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.+.+++.+||++|.. ..+..+|+++|||.+.+.
T Consensus 343 ~~~~~~~~pDl~Ig~--s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 343 IAAVEEYRPDLAIGT--TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HHHHhhcCCCEEEeC--ChhhHHHHHhCCCEEEec
Confidence 345667899999998 335678999999998654
No 390
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=31.19 E-value=81 Score=31.80 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=27.9
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
.++++.+++.+||++|.+. ....+|+++|+|++.++..
T Consensus 360 ~e~~~~i~~~~pdliig~~--~~~~~a~~~gip~~~~~~p 397 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ--MERHIGKRLDIPCAVISAP 397 (430)
T ss_pred HHHHHHHHhhCCCEEEecc--hhhHHHHHcCCCEEEEeCC
Confidence 3466677778999999993 2244689999999876543
No 391
>PRK09213 pur operon repressor; Provisional
Probab=31.17 E-value=1.1e+02 Score=28.79 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEec
Q 012080 107 GQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
..+.+.+++.++|+|++= . .+.|..+|..+|+|++...-
T Consensus 120 ~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 120 RIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred HHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 334444555679998876 3 88899999999999987754
No 392
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=31.13 E-value=1.8e+02 Score=28.42 Aligned_cols=92 Identities=14% Similarity=0.164 Sum_probs=65.8
Q ss_pred EEeccccCchh-hhcccCcceeeccC---Ccc-hHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCccc
Q 012080 336 VVCGEWVEQMP-ILEHSSVGCFVSHC---GFG-SMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFS 410 (471)
Q Consensus 336 v~~~~~~pq~~-lL~~~~v~~~ItHg---G~~-s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t 410 (471)
..+.+..+-.+ +-.|.|+ +|+|= |.| ...|+|+-|-|.| +|+-.+. + +|-..+- +.
T Consensus 255 asfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~-d--~GYYY~~-----fD 315 (364)
T PF10933_consen 255 ASFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLK-D--VGYYYPD-----FD 315 (364)
T ss_pred eEEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhc-c--cCcCCCC-----cc
Confidence 33444555544 4457888 99994 333 6789999999998 5788777 4 8877775 66
Q ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 411 KESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 411 ~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
..+=.+++.+++.+...+.+.|+++|+++=..+.-.
T Consensus 316 ~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~ 351 (364)
T PF10933_consen 316 AFEGARQLLRAIREHDADLDAYRARARRLLDRLSPE 351 (364)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCCC
Confidence 666666677776665677889999999987776544
No 393
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=30.98 E-value=81 Score=27.27 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=23.2
Q ss_pred HHHHHHhCCCcEEEEc-C-ccc-hHHHHHHcCCceEEEe
Q 012080 109 VEAVIKAAKPRLLFYD-I-AYW-MATISKSLSIKCIKYN 144 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D-~-~~~-~~~~A~~~giP~v~~~ 144 (471)
+++++ ..+||+||.. . ... ....-+..|||++.+.
T Consensus 62 ~E~ll-~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 62 VELIV-ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHHh-ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 44444 5699999987 3 222 3344578999998764
No 394
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=30.83 E-value=60 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCCc
Q 012080 32 LHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 32 ~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+..|..|+++|++|+++-....
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHCCCcEEEEecCcc
Confidence 6678999999999999976653
No 395
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=30.78 E-value=5e+02 Score=25.17 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
+...|.+.-.++.|-..-+-.|+..|.++|++|.++..+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 4455777788999999999999999999999999999887544
No 396
>PRK10037 cell division protein; Provisional
Probab=30.77 E-value=85 Score=28.86 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=30.2
Q ss_pred eEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
-|.|... |+.|-..-...||..|+++|++|.++=.+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 4555544 888999999999999999999999884443
No 397
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=30.45 E-value=2.5e+02 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=21.6
Q ss_pred cceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
.+++++|.|- +++.+|.+.++|+|++-
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3448888774 58899999999999984
No 398
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=30.39 E-value=3.4e+02 Score=25.87 Aligned_cols=33 Identities=9% Similarity=-0.095 Sum_probs=23.8
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~ 52 (471)
|++||+...+ .++ .+++.|++.| ++|..+....
T Consensus 1 ~~~vLv~g~~-~~~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAG-RRV-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCC-ccH-----HHHHHHHHhccCCEEEEECCCC
Confidence 5788888764 333 7889998884 8887776554
No 399
>PRK07004 replicative DNA helicase; Provisional
Probab=29.99 E-value=4.3e+02 Score=26.99 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCchhhh
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRKAQTQL 57 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~~~~~~ 57 (471)
|++...|+.|-..-++.+|..++ +.|..|.|++-+.....+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql 257 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 55568899999999999999886 469999999988766544
No 400
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=29.90 E-value=88 Score=25.41 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=26.1
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHH--hcCCceEEEeC
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLE--LTGLCFLIALK 311 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~--~~~~~~~~~~~ 311 (471)
.+++++|||........+..+.+.++ ..+..+.|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 58999999997644456777777774 34567777754
No 401
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.31 E-value=3.9e+02 Score=23.82 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=56.2
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhh-ccCCCCC---------CCeEEEEecCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQL-QHFNLHP---------DLITLHPLTVPHVDGLPA 82 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~-~~~~~~~---------~~~~~~~i~~~~~~~~~~ 82 (471)
..-+++.-.++.|-..-+++++.+-+++ |..|.+++.+.....+ +.+.... ..+.+.+... .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~-------~ 91 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFP-------E 91 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSG-------G
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccc-------c
Confidence 3456777778899999999988777777 9999999988765433 2221111 1244444320 0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc
Q 012080 83 GAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA 126 (471)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~ 126 (471)
..... ..........+.+.+++.+++.||.| ++
T Consensus 92 ~~~~~-----------~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWS-----------PNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-T-----------SCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccc-----------ccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 00000 01133345667777888899999999 53
No 402
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=29.31 E-value=63 Score=28.01 Aligned_cols=35 Identities=14% Similarity=0.381 Sum_probs=28.1
Q ss_pred CccCHHH-HHHHHHHHHh-CCCeEEEEeCCCchhhhc
Q 012080 24 AVGHMTP-FLHLSNKLAE-KGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 24 ~~GH~~p-~~~la~~L~~-rGh~Vt~~~~~~~~~~~~ 58 (471)
+.||... ...+.++|++ +||+|.++.++.....++
T Consensus 8 Gsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 8 GSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 3477766 8899999984 599999999998876554
No 403
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=29.21 E-value=75 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.344 Sum_probs=23.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
|=+++..+.|-+- ..||++|.++||+|+++...
T Consensus 17 VR~itN~SSG~iG--~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 17 VRGITNHSTGQLG--KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred ceeecCccchHHH--HHHHHHHHhCCCEEEEEECc
Confidence 3445555555443 56789999999999998744
No 404
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=29.19 E-value=98 Score=28.98 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|..|+|+-=||.|=..-+..||..|+++|++|.++=-+.
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 346777766899999999999999999999988874443
No 405
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=29.11 E-value=4.4e+02 Score=23.90 Aligned_cols=151 Identities=9% Similarity=-0.057 Sum_probs=77.9
Q ss_pred ccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchh
Q 012080 267 WLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMP 346 (471)
Q Consensus 267 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ 346 (471)
|++..+ +.+++|+-|..+. .-+..|...+.++.++-.. +-+.+..-.....+.+..--.+..
T Consensus 20 ~l~~~~-~~VLVVGGG~VA~-------RK~~~Ll~~gA~VtVVap~----------i~~el~~l~~~~~i~~~~r~~~~~ 81 (223)
T PRK05562 20 SLLSNK-IKVLIIGGGKAAF-------IKGKTFLKKGCYVYILSKK----------FSKEFLDLKKYGNLKLIKGNYDKE 81 (223)
T ss_pred EEECCC-CEEEEECCCHHHH-------HHHHHHHhCCCEEEEEcCC----------CCHHHHHHHhCCCEEEEeCCCChH
Confidence 444333 5688888887742 2223444467777666431 222232222222333322112334
Q ss_pred hhcccCcceeeccCCcchHHHHHh-----hCCcEEeccccccchhhH-----HHHHHhhcceEEeecccCCcccHHHHHH
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLM-----SDCQIVLVPHLGDQILNT-----RLLAEELKVAVEVEREENGWFSKESLCK 416 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~-----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~t~~~l~~ 416 (471)
-|..+.+ +|..-+-..+.+.++ .|+++.++ |++..+ ..+. +=++-+.+......-.-...|++
T Consensus 82 dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv~-rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 82 FIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQRS-TKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred HhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEEe-cCCEEEEEECCCcCcHHHHHHHH
Confidence 4556665 777777666666543 36666654 332222 1122 22333444432111133466888
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 417 AIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 417 ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
.|++++.+. ..+-+.+.++++.+++.
T Consensus 155 ~ie~~l~~~----~~l~~~l~~~R~~vk~~ 180 (223)
T PRK05562 155 KVKNFLKKY----DDFIEYVTKIRNKAKKN 180 (223)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 999888432 26788888888888775
No 406
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=29.07 E-value=73 Score=31.80 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=35.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
++.||++.-.++. ..+-...+.+.|.+.|++|.++.++....++.
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~ 49 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVT 49 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHh
Confidence 3457887655544 66688999999999999999999998777664
No 407
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.97 E-value=4.7e+02 Score=24.75 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=30.0
Q ss_pred cEEeccccCch---hhhcccCcceeeccCCcchHHHHHhhCCcEE
Q 012080 335 GVVCGEWVEQM---PILEHSSVGCFVSHCGFGSMWESLMSDCQIV 376 (471)
Q Consensus 335 nv~~~~~~pq~---~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v 376 (471)
.++..+|+||. .||.-|++- +- =|--|+.-|..+|+|.+
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n--~V-RGEDSFVRAq~agkPfl 280 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFN--LV-RGEDSFVRAQLAGKPFL 280 (370)
T ss_pred EEEEecCCcHhHHHHHHHhcccc--ee-ecchHHHHHHHcCCCcE
Confidence 34556799985 588888872 22 37789999999999987
No 408
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.92 E-value=4.5e+02 Score=24.94 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (471)
..+.+||+++.++ .||-.-.+--+..-.+-..+|.++.+.. ..+.+++.| +.+..++ .-+..
T Consensus 90 ~~~~~kiavl~Sg-~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~g-----Ip~~~~~-----~~~~~----- 153 (289)
T PRK13010 90 DGQRPKVVIMVSK-FDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHD-----IPFHHLP-----VTPDT----- 153 (289)
T ss_pred CCCCeEEEEEEeC-CCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcC-----CCEEEeC-----CCccc-----
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.......+.+.|++.++|++|.- + ......+-....-..+-++++..
T Consensus 154 -------------~~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~iiNiHpSlL 202 (289)
T PRK13010 154 -------------KAQQEAQILDLIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFL 202 (289)
T ss_pred -------------ccchHHHHHHHHHHhCCCEEEEehhhhhCCHHHHhhccCCceeeCcccC
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=28.86 E-value=4.2e+02 Score=23.61 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=33.9
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++.-.++.|=..-++.++..-+++|+.|.+++.+.....+
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERI 59 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 455556688899889999988888889999999998866554
No 410
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=28.84 E-value=1.2e+02 Score=27.70 Aligned_cols=41 Identities=24% Similarity=0.183 Sum_probs=36.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|.+|.++--++.|--.-...++.+|++.|++|..++-++-.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKa 41 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKA 41 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCc
Confidence 46899999999999999999999999999999999877643
No 411
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=28.80 E-value=1.2e+02 Score=25.93 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=23.7
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhcCC
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELTGL 304 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~~~ 304 (471)
.+|+|+||....+...++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999988777778888888876654
No 412
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=28.76 E-value=67 Score=31.95 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=34.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
..||++.-.+ .+...-...+.+.|.+.|++|.++.++....++.
T Consensus 3 ~k~IllgiTG-Siaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~ 46 (390)
T TIGR00521 3 NKKILLGVTG-GIAAYKTVELVRELVRQGAEVKVIMTEAAKKFIT 46 (390)
T ss_pred CCEEEEEEeC-HHHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHH
Confidence 3477776555 4455668999999999999999999998877664
No 413
>PRK08322 acetolactate synthase; Reviewed
Probab=28.71 E-value=2.8e+02 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=21.7
Q ss_pred cceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
.+++++|.|- +++.+|...++|+|++-
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 3448888774 48899999999999984
No 414
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=28.69 E-value=2.4e+02 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=21.7
Q ss_pred cceeeccCCcc------hHHHHHhhCCcEEecc
Q 012080 353 VGCFVSHCGFG------SMWESLMSDCQIVLVP 379 (471)
Q Consensus 353 v~~~ItHgG~~------s~~Eal~~GvP~v~~P 379 (471)
.+++++|.|-| .+.||...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33488888855 6889999999999984
No 415
>PRK07574 formate dehydrogenase; Provisional
Probab=28.63 E-value=4.1e+02 Score=26.37 Aligned_cols=71 Identities=15% Similarity=0.140 Sum_probs=41.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-.+++|.+. +.+++.++..+.+++.. .... .+..... ..++ ..+....++++.+++
T Consensus 193 ktVGIvG~G~IG-------~~vA~~l~~fG~~V~~~-dr~~--------~~~~~~~---~~g~--~~~~~l~ell~~aDv 251 (385)
T PRK07574 193 MTVGIVGAGRIG-------LAVLRRLKPFDVKLHYT-DRHR--------LPEEVEQ---ELGL--TYHVSFDSLVSVCDV 251 (385)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEE-CCCC--------CchhhHh---hcCc--eecCCHHHHhhcCCE
Confidence 458999999986 45556566678876643 2110 1111110 1122 113456789999999
Q ss_pred ceeeccCCcchHHH
Q 012080 354 GCFVSHCGFGSMWE 367 (471)
Q Consensus 354 ~~~ItHgG~~s~~E 367 (471)
++.|+-.+.-.+
T Consensus 252 --V~l~lPlt~~T~ 263 (385)
T PRK07574 252 --VTIHCPLHPETE 263 (385)
T ss_pred --EEEcCCCCHHHH
Confidence 999987655433
No 416
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=28.59 E-value=83 Score=28.30 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=25.4
Q ss_pred HHHHhCCCcEEEEc-Cc--cchHHHHHHcCCceEEEecch
Q 012080 111 AVIKAAKPRLLFYD-IA--YWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D-~~--~~~~~~A~~~giP~v~~~~~~ 147 (471)
+.|.+.+||+||.. .. .....-....++|++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 34556789999998 44 455556678999999887654
No 417
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.56 E-value=1.3e+02 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.062 Sum_probs=29.7
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..|+|. +-++.|-..-...||..|+++|++|.++=.+.
T Consensus 18 kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~ 56 (204)
T TIGR01007 18 KVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDM 56 (204)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 344444 44777899999999999999999998875543
No 418
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=28.43 E-value=75 Score=28.11 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=25.1
Q ss_pred CCCcEE-EEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 116 AKPRLL-FYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 116 ~~~Dlv-i~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
..||+| |.| . ..-+..=|.++|||+|.+.-+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 368985 456 5 8888889999999999887543
No 419
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.35 E-value=50 Score=31.48 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=30.5
Q ss_pred hhhcccCcceeeccCCcchHHHHHh----hCCcEEecccccc
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGD 383 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~D 383 (471)
+.|..-++.++|.=||.+|+.-|.. .|+|+|.+|-+.|
T Consensus 85 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 85 ENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 3566677888999999999877753 7999999997554
No 420
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.29 E-value=2.8e+02 Score=26.69 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=61.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+..+++|.++ +++++-++..|.+++..-... -+. . ..++...++|+.+++
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~---------~~~---------~---~~~~~l~ell~~sDi 200 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG---------RPA---------R---PDRLPLDELLPQVDA 200 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC---------Ccc---------c---ccccCHHHHHHhCCE
Confidence 569999999986 445555555688876542210 011 0 124567889999998
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE-eecccCCcccHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVE-VEREENGWFSKESLCKAIK 419 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~t~~~l~~ai~ 419 (471)
++-|+-.+.- .....|+..+. .++=|.. +...+.+.+..+.|.++++
T Consensus 201 --v~l~lPlt~~----------------T~~li~~~~~~-~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 201 --LTLHCPLTEH----------------TRHLIGARELA-LMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred --EEECCCCChH----------------HhcCcCHHHHh-cCCCCeEEEECCCccccCHHHHHHHHH
Confidence 8888644322 25566777777 7776533 3344445677777777776
No 421
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=28.28 E-value=90 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.5
Q ss_pred ecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 20 LPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 20 ~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+..+..--++|..-++...++.|++|+++.+--
T Consensus 9 l~SG~~dk~~~a~iias~A~A~G~EV~VF~Tfw 41 (137)
T COG2210 9 LASGTLDKAYAALIIASGAAAMGYEVTVFFTFW 41 (137)
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHH
Confidence 366778899999999999999999999987743
No 422
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.07 E-value=4e+02 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred ccCCcchHHHHHhhC--CcE--Eeccc-cccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 358 SHCGFGSMWESLMSD--CQI--VLVPH-LGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 358 tHgG~~s~~Eal~~G--vP~--v~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
.+||+|+........ +|+ +.+|- +.+ ......+.+..| ++++.|.++|+++|
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~-~g~~~~l~~~~G------------l~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFND-RVPVEELYKRNH------------LTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCC-CCCHHHHHHHHC------------cCHHHHHHHHHHHh
Confidence 569998866665543 333 44443 333 333333331222 78888999888775
No 423
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=28.05 E-value=1.3e+02 Score=21.94 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=27.6
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
+++...++.|=..-...+|..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445555678899999999999999999998776
No 424
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=28.04 E-value=22 Score=26.27 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=16.3
Q ss_pred hHHHHHhhCCcEEecccccc
Q 012080 364 SMWESLMSDCQIVLVPHLGD 383 (471)
Q Consensus 364 s~~Eal~~GvP~v~~P~~~D 383 (471)
+-.++-|.|+|+++.|+..+
T Consensus 50 ~P~~G~Y~G~PViV~PI~~~ 69 (84)
T PF09884_consen 50 TPIEGPYKGVPVIVAPIKDE 69 (84)
T ss_pred ccCCcccCCeeEEEEEEEcC
Confidence 45667899999999998654
No 425
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=27.78 E-value=3.3e+02 Score=25.30 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=23.9
Q ss_pred CCcEEEE-c-C-ccchHHHHHHcCCceEEEecc
Q 012080 117 KPRLLFY-D-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 117 ~~Dlvi~-D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.||+||+ | - ...++.=|..+|||+|.+.-+
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 5999554 5 4 778888899999999988754
No 426
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=27.77 E-value=3.1e+02 Score=26.46 Aligned_cols=104 Identities=10% Similarity=0.078 Sum_probs=59.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHH-hcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccC
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLE-LTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSS 352 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~ 352 (471)
+.+..+++|.++ +.+++-++ ..+.+++..-.. .++.... ..++ .+.+..++|+.++
T Consensus 146 ktvGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~----------~~~~~~~---~~~~---~~~~l~ell~~sD 202 (323)
T PRK15409 146 KTLGIVGMGRIG-------MALAQRAHFGFNMPILYNARR----------HHKEAEE---RFNA---RYCDLDTLLQESD 202 (323)
T ss_pred CEEEEEcccHHH-------HHHHHHHHhcCCCEEEEECCC----------CchhhHH---hcCc---EecCHHHHHHhCC
Confidence 558899999986 34444443 468887643221 1110000 0121 2567789999999
Q ss_pred cceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceE-EeecccCCcccHHHHHHHHH
Q 012080 353 VGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAV-EVEREENGWFSKESLCKAIK 419 (471)
Q Consensus 353 v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~-~l~~~~~~~~t~~~l~~ai~ 419 (471)
+ ++-|+-.+.-. ....|+..+. .++=|- .+...+.+.+..+.|.++++
T Consensus 203 v--v~lh~plt~~T----------------~~li~~~~l~-~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 203 F--VCIILPLTDET----------------HHLFGAEQFA-KMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred E--EEEeCCCChHH----------------hhccCHHHHh-cCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9 88887654322 2345666666 666553 33334445666666666665
No 427
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.75 E-value=48 Score=30.56 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.6
Q ss_pred cCcceeeccCCcchHHHHHhh----CCcEEeccc
Q 012080 351 SSVGCFVSHCGFGSMWESLMS----DCQIVLVPH 380 (471)
Q Consensus 351 ~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~ 380 (471)
+++ +|+-||=||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 455 9999999999988664 688887763
No 428
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=27.59 E-value=2.6e+02 Score=26.42 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchh---hhccCC---CCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHH
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRKAQT---QLQHFN---LHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAM 102 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~~~~---~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
.+-+.+++.|.++|++|.+++.+.... .+.... ..-...+++-+|.|- ..++.....-..
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~---~~~~~~i~~~~~----------- 76 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPG---TSHDGKVATVFS----------- 76 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCcc---ccCCceEecccc-----------
Confidence 467889999999999999998873211 111110 001124555555431 111100000000
Q ss_pred HHhHHHHHHHHHhCCCcEEEEc-CccchHH-HHHHcCCceEEE
Q 012080 103 DRCRGQVEAVIKAAKPRLLFYD-IAYWMAT-ISKSLSIKCIKY 143 (471)
Q Consensus 103 ~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~-~A~~~giP~v~~ 143 (471)
.....--+++++..++-.+++- +...-.. .|+..||+++-+
T Consensus 77 ~~~~~l~~~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~ 119 (287)
T TIGR02853 77 NEKVVLTPELLESTKGHCTIYVGISNPYLEQLAADAGVKLIEL 119 (287)
T ss_pred cCCccccHHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEE
Confidence 0000001234556666777777 6444455 899999998844
No 429
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.57 E-value=86 Score=26.82 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=23.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 23 FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 23 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|+.|++-- .++++|.++||+|+.++-...+
T Consensus 5 GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~ 34 (183)
T PF13460_consen 5 GATGFVGR--ALAKQLLRRGHEVTALVRSPSK 34 (183)
T ss_dssp TTTSHHHH--HHHHHHHHTTSEEEEEESSGGG
T ss_pred CCCChHHH--HHHHHHHHCCCEEEEEecCchh
Confidence 55566543 5899999999999999977653
No 430
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.25 E-value=1.3e+02 Score=30.43 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
+...|+|+-.++.|=..-+..||..|.++|++|.++..+.++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3456777777899999999999999999999999999887654
No 431
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=27.09 E-value=1.9e+02 Score=24.75 Aligned_cols=45 Identities=7% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHhCCCcEEEEc-Cccc-------------h--HHHHHHcCCceEEEecc
Q 012080 102 MDRCRGQVEAVIKAAKPRLLFYD-IAYW-------------M--ATISKSLSIKCIKYNVV 146 (471)
Q Consensus 102 ~~~~~~~l~~~l~~~~~Dlvi~D-~~~~-------------~--~~~A~~~giP~v~~~~~ 146 (471)
...+...+.+++++.+||.++.+ .++. | ..++...|+|+.-+.+.
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 44456789999999999999988 3221 1 22556788998866544
No 432
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.03 E-value=1.6e+02 Score=24.18 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=35.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+.+|++...++-+|-.-.--++..|...|++|.........
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~ 42 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP 42 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH
Confidence 46899998888999999999999999999999998876543
No 433
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=4e+02 Score=25.62 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=33.6
Q ss_pred CeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 15 FPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 15 ~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
++++++ +--..|-..-.+.|.++|.++|.++-|+.+.+..-
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtgi 190 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTGI 190 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCceee
Confidence 344444 66677999999999999999999999999988643
No 434
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.84 E-value=5.3e+02 Score=24.13 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+.-+|+|+-..+.|-..-+..|+..+..+|+.|.++..+.++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 345788887788898888888999999899999999988764
No 435
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=26.75 E-value=4.7e+02 Score=25.14 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 106 RGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 106 ~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
..++.++++. -|++|+. ......+|..+|+|.|.+...
T Consensus 251 L~el~ali~~--a~l~Vs~-DSGp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 251 LPQLAALIDH--ARLFIGV-DSVPMHMAAALGTPLVALFGP 288 (344)
T ss_pred HHHHHHHHHh--CCEEEec-CCHHHHHHHHcCCCEEEEECC
Confidence 3455566664 5888877 334577999999999988653
No 436
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=26.56 E-value=1.3e+02 Score=26.13 Aligned_cols=44 Identities=9% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ 56 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 56 (471)
+..+++|+-.++.|-..-+.++|+++.++|+.|.|+........
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 34578888888899877899999999999999999877664433
No 437
>PLN00016 RNA-binding protein; Provisional
Probab=26.51 E-value=75 Score=31.30 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCCCeEEEecC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPW--FAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..+.+|+++.. |+.|.+- ..|++.|.++||+|+.++...
T Consensus 50 ~~~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 34457777611 3344443 457789999999999988654
No 438
>PF12363 DUF3647: Phage protein ; InterPro: IPR024410 Proteins in this entry are frequently annotated as phage proteins, however there is little accompanying literature to back this up or to describe the nature of these phage proteins.
Probab=26.44 E-value=1.6e+02 Score=23.32 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=40.0
Q ss_pred hhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHH
Q 012080 394 ELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKF 456 (471)
Q Consensus 394 ~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~ 456 (471)
-+-+|..-..++ .|.++|.++|.++.++.+ .+.+=...+-+.+.+.+.....+.++
T Consensus 56 ~i~~a~~~~~~~---~s~~eIe~~ie~~~e~~~----~~~~l~~~vl~el~~s~~~k~~~k~~ 111 (113)
T PF12363_consen 56 IIYAATAHEKKR---PSREEIEDYIEDIIEDED----DIEELFDEVLKELKKSNFFKRAVKKF 111 (113)
T ss_pred HHHHHhcccCCC---CCHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 666666555543 899999999999887751 37777777777777777666665554
No 439
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=26.43 E-value=3.3e+02 Score=27.00 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=37.1
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-.|++|.++ ..+++.++..|.+++.. .+.. . .. ..+ ..+.+..++++.+++
T Consensus 117 ktvGIIG~G~IG-------~~va~~l~a~G~~V~~~-Dp~~------~--~~-------~~~---~~~~~l~ell~~aDi 170 (381)
T PRK00257 117 RTYGVVGAGHVG-------GRLVRVLRGLGWKVLVC-DPPR------Q--EA-------EGD---GDFVSLERILEECDV 170 (381)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCEEEEE-CCcc------c--cc-------ccC---ccccCHHHHHhhCCE
Confidence 558899999986 44555555678887654 2100 0 00 001 135667788888888
Q ss_pred ceeeccCCc
Q 012080 354 GCFVSHCGF 362 (471)
Q Consensus 354 ~~~ItHgG~ 362 (471)
++.|.-.
T Consensus 171 --V~lh~Pl 177 (381)
T PRK00257 171 --ISLHTPL 177 (381)
T ss_pred --EEEeCcC
Confidence 7777654
No 440
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.36 E-value=1.4e+02 Score=28.85 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=38.1
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..-|+|+-.-+.|-..-.-.||..|.+.|++|.++..+.|+.-.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 44567777788999999999999999999999999999887533
No 441
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.31 E-value=1.2e+02 Score=22.56 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.7
Q ss_pred CeEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 012080 15 FPIVMLPWFAV--GHMTPFLHLSNKLAEKGHKITILLP 50 (471)
Q Consensus 15 ~~il~~~~~~~--GH~~p~~~la~~L~~rGh~Vt~~~~ 50 (471)
..|+++|.... .+..-...++..|.+.|.+|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36788886643 4667789999999999999987543
No 442
>PRK13604 luxD acyl transferase; Provisional
Probab=26.28 E-value=1.4e+02 Score=28.60 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
++...++++.+..++-..+..+|+.|.++|+.|..+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344566667676677667999999999999987654
No 443
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=26.21 E-value=3.1e+02 Score=25.14 Aligned_cols=79 Identities=10% Similarity=0.185 Sum_probs=48.8
Q ss_pred CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEE
Q 012080 42 GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLL 121 (471)
Q Consensus 42 Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlv 121 (471)
.....+..++.+..+.+.+| +....+- +...+ ... .......+.+.+++.+..+|
T Consensus 149 ~~~~~v~~h~~~~Y~~~~~g-----l~~~~~~-----~~~~~----~~p-----------s~~~l~~l~~~ik~~~v~~i 203 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKRYG-----LKVIGVI-----EISPG----EEP-----------SPKDLAELIKLIKENKVKCI 203 (256)
T ss_dssp SGGEEEEEESTTHHHHHHTT------EEEEEE-----SSSSS----SSS------------HHHHHHHHHHHHHTT-SEE
T ss_pred cCCeEEEEChHHHHHHHhcC-----Cceeeee-----ccccc----cCC-----------CHHHHHHHHHHhhhcCCcEE
Confidence 34566777788887788887 6665542 11111 111 12235577788899999999
Q ss_pred EEc-C--ccchHHHHHHcCCceEEEec
Q 012080 122 FYD-I--AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 122 i~D-~--~~~~~~~A~~~giP~v~~~~ 145 (471)
+++ . .-.+-.+|+..|+|.+.+.+
T Consensus 204 ~~e~~~~~~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 204 FTEPQFSSKLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp EEETTS-THHHHHHHHCCT-EEEESST
T ss_pred EecCCCChHHHHHHHHHcCCcEEEeCC
Confidence 999 3 44456689999999975543
No 444
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=25.71 E-value=50 Score=28.23 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=20.5
Q ss_pred eeeccCCc------chHHHHHhhCCcEEecc
Q 012080 355 CFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 355 ~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
++++|+|- +.+.||...++|||++.
T Consensus 63 v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 63 AVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 37778774 47789999999999995
No 445
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=25.61 E-value=94 Score=31.31 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 111 AVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
+.+++.+||++|.. .-+..+|+++|||++.+.
T Consensus 349 ~~l~~~~pDllig~--s~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGT--TPLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcC--CcchHHHHHcCCCEEEec
Confidence 45577899999998 224567999999999754
No 446
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=25.50 E-value=5.6e+02 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=30.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
+.+|+++-.|..|. -+|+.|+++||.|.++.-+......
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~ 41 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATL 41 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHH
Confidence 35777777676664 4799999999999999988876544
No 447
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=25.39 E-value=3.5e+02 Score=23.66 Aligned_cols=128 Identities=10% Similarity=0.105 Sum_probs=65.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCC------CCCCCCCCC--CC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVP------HVDGLPAGA--ET 86 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~--~~ 86 (471)
+|.++=.- .-.+.-+..+|+.+.++ |.++.+-.+.+-++-++.+. +-+..+-.- .+..+|... ..
T Consensus 30 ei~L~Did-~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gAD-----fVi~~irvGg~~~r~~De~Ip~k~Gi~~ 103 (183)
T PF02056_consen 30 EIVLMDID-EERLEIVERLARRMVEEAGADLKVEATTDRREALEGAD-----FVINQIRVGGLEAREIDEEIPLKYGIVG 103 (183)
T ss_dssp EEEEE-SC-HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTES-----EEEE---TTHHHHHHHHHHTGGCCTTT-
T ss_pred EEEEEcCC-HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCC-----EEEEEeeecchHHHHHHHHHHHHhCCcc
Confidence 44444222 25667777888888655 88888888877776665433 333333210 000111110 01
Q ss_pred CCCCChhhHHHHHHHHH--HhHHHHHHHHHhCCCcEEEEcC-ccchHH---HHHHcC-CceEEEecchhHH
Q 012080 87 ASDVPMSSINLLVIAMD--RCRGQVEAVIKAAKPRLLFYDI-AYWMAT---ISKSLS-IKCIKYNVVCAAS 150 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~Dlvi~D~-~~~~~~---~A~~~g-iP~v~~~~~~~~~ 150 (471)
..+-......++.. .+ ....++.+.+++.-||+-+..+ +|.+.. +.+..+ ++.+.++..+...
T Consensus 104 ~~~eT~G~GG~~~a-lRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~ 173 (183)
T PF02056_consen 104 TIQETVGPGGFFRA-LRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGT 173 (183)
T ss_dssp BTTSSSTHHHHHHH-HHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHH
T ss_pred ccccccCccHHHHH-HhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 00111111122222 22 1234455566667899999995 776654 445666 9999998876543
No 448
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=25.37 E-value=2.8e+02 Score=24.83 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=18.8
Q ss_pred CeEEEecCCCcc--CHHHHHHHHHHHHh
Q 012080 15 FPIVMLPWFAVG--HMTPFLHLSNKLAE 40 (471)
Q Consensus 15 ~~il~~~~~~~G--H~~p~~~la~~L~~ 40 (471)
|+||+.-++-+| -.||...++++|..
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~ 28 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNG 28 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhc
Confidence 357776554443 69999999999965
No 449
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.33 E-value=2.2e+02 Score=26.42 Aligned_cols=89 Identities=9% Similarity=0.080 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
...-+..|++.|.++|++|.+++.+..++..+.....-.....+.+ .... ..
T Consensus 138 ~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~---------------~~~~-------------~l 189 (279)
T cd03789 138 PAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNL---------------AGKT-------------SL 189 (279)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccC---------------cCCC-------------CH
Confidence 3456899999999999999988877655444332100000000000 0000 12
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
.++.++++. -|++|+- ......+|..+|+|++.+...
T Consensus 190 ~e~~~li~~--~~l~I~~-Dsg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 190 RELAALLAR--ADLVVTN-DSGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred HHHHHHHHh--CCEEEee-CCHHHHHHHHcCCCEEEEECC
Confidence 234455554 5887775 124566888999999988754
No 450
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=25.27 E-value=2.1e+02 Score=23.90 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=49.0
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCchhhhccCCCCCCCeEEEEecC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKAQTQLQHFNLHPDLITLHPLTV 74 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 74 (471)
.+..+|+|++..+.+|+.-.+.+.+.+++.. |++.+..-.-....++.+.....++++..+++
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~ 121 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNF 121 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCC
Confidence 5567999999999999999999999999884 77888877766666665543334578777664
No 451
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=25.22 E-value=1.4e+02 Score=23.88 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
+...|++++++.. +..++..++.|.+.|.+++++.
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~ 42 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVID 42 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEe
Confidence 3457888887765 5678999999999999988764
No 452
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.15 E-value=1.4e+02 Score=27.29 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=27.7
Q ss_pred HHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEe
Q 012080 108 QVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~ 144 (471)
.+.+.++..++|+|++= . .+.|..+|..+|+|++...
T Consensus 102 ~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 102 VVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred HHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 34444455678998876 3 8888889999999988653
No 453
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=25.08 E-value=2.9e+02 Score=26.73 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=67.7
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+=.+++|.++ +++++-++..+.+++.--+.. .|+.-. . .-..|++..++|+.+++
T Consensus 147 ktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~---------~~~~~~------~-~~~~y~~l~ell~~sDi 203 (324)
T COG1052 147 KTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSP---------NPEAEK------E-LGARYVDLDELLAESDI 203 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCC---------ChHHHh------h-cCceeccHHHHHHhCCE
Confidence 557888888886 444554455688877653311 111100 0 11347888999999999
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee-cccCCcccHHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE-REENGWFSKESLCKAIKC 420 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~-~~~~~~~t~~~l~~ai~~ 420 (471)
++-||..+-- ...-.|+..++ .++=|..+- ..+.+.+..+.|.+||++
T Consensus 204 --i~l~~Plt~~----------------T~hLin~~~l~-~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 204 --ISLHCPLTPE----------------TRHLINAEELA-KMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred --EEEeCCCChH----------------HhhhcCHHHHH-hCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 8878755321 24567899999 888876555 445567888888888874
No 454
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=25.00 E-value=86 Score=29.24 Aligned_cols=39 Identities=8% Similarity=0.192 Sum_probs=23.2
Q ss_pred CcEEEEEeCccccCCHH-HHHHHHHHHH--hcCCceEEEeCC
Q 012080 274 SSVVYCAFGSQIILEKK-QFQELLLGLE--LTGLCFLIALKP 312 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~-~~~~~~~al~--~~~~~~~~~~~~ 312 (471)
|.+|++||||....... -+..+.+.++ .++..+.|++..
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 35899999998764333 5666666553 478899999753
No 455
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.99 E-value=93 Score=27.73 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=24.8
Q ss_pred CCcEEE-Ec-C-ccchHHHHHHcCCceEEEecch
Q 012080 117 KPRLLF-YD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 117 ~~Dlvi-~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.||+|| .| . ..-+..=|.++|||+|.+.-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 799955 45 4 8888889999999999987553
No 456
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=24.92 E-value=1.6e+02 Score=25.11 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhCCCcEEEEc--C--ccchHHHHHHcCCceEEEecc
Q 012080 105 CRGQVEAVIKAAKPRLLFYD--I--AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D--~--~~~~~~~A~~~giP~v~~~~~ 146 (471)
..+.+.+++++.+||+|+.- . .-.+..+|.++|.|++.-...
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 34556667777889999988 2 556677899999999866544
No 457
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.90 E-value=1e+02 Score=29.10 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=24.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+||+++-.++.| ..+|..|.++||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 367777655554 45788899999999999873
No 458
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=24.81 E-value=93 Score=25.84 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=26.1
Q ss_pred eEEEe-cCCCccCHHHHHHHHHHHHhC-CCeEEE
Q 012080 16 PIVML-PWFAVGHMTPFLHLSNKLAEK-GHKITI 47 (471)
Q Consensus 16 ~il~~-~~~~~GH~~p~~~la~~L~~r-Gh~Vt~ 47 (471)
+|++. +.-...|..-.++||..|.+. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 45554 666667999999999999999 999875
No 459
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=24.72 E-value=1.1e+02 Score=31.66 Aligned_cols=35 Identities=9% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 108 QVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.+++++++.+||++|.+. .+..+|+.+|+|++.+.
T Consensus 428 ~l~~~l~~~~~DlliG~s--~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 428 HLRSLVFTEPVDFLIGNS--YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHhhcCCCEEEECc--hHHHHHHHcCCCEEEec
Confidence 345556667899999883 24668899999998654
No 460
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=24.50 E-value=2.2e+02 Score=27.46 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=31.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+.++-.++.|-..-++.++...+++|..+.|+.++...
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~ 95 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHAL 95 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccH
Confidence 34456688899999999999999999999999887643
No 461
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=24.50 E-value=1.1e+02 Score=30.84 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCeEEEecCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAV--G-HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~--G-H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+++|.-+- . -.+...+|++.|.+||.+|.|+.++-.
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVA 348 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA 348 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 467888876443 2 234688999999999999999999864
No 462
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=24.43 E-value=79 Score=28.68 Aligned_cols=26 Identities=15% Similarity=0.399 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|..-|...|++|.++|++|+++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 55678899999999999999887764
No 463
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=24.40 E-value=2.6e+02 Score=24.74 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhC
Q 012080 293 QELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSD 372 (471)
Q Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~G 372 (471)
.++.+.+...+..+++-.+ +.-.+...|.++...+-+=+ ||++ .=.++|..+..+|+.+|
T Consensus 69 ~~l~~~l~~~~~dlvvLAG-------yMrIL~~~fl~~~~grIlNI-----------HPSL--LP~f~G~h~~~~A~~aG 128 (200)
T COG0299 69 RALVEALDEYGPDLVVLAG-------YMRILGPEFLSRFEGRILNI-----------HPSL--LPAFPGLHAHEQALEAG 128 (200)
T ss_pred HHHHHHHHhcCCCEEEEcc-------hHHHcCHHHHHHhhcceEec-----------Cccc--ccCCCCchHHHHHHHcC
Q ss_pred CcE--EeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHH
Q 012080 373 CQI--VLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCV 421 (471)
Q Consensus 373 vP~--v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~l 421 (471)
+.. ..+-+..+..+-+-.+. ...+-+...+ |.|+|++.|.+.
T Consensus 129 ~k~sG~TVH~V~e~vD~GpII~---Q~~Vpv~~~D----t~etl~~RV~~~ 172 (200)
T COG0299 129 VKVSGCTVHFVTEGVDTGPIIA---QAAVPVLPGD----TAETLEARVLEQ 172 (200)
T ss_pred CCccCcEEEEEccCCCCCCeEE---EEeeeecCCC----CHHHHHHHHHHH
No 464
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.24 E-value=1.6e+02 Score=25.22 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=26.0
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
.+..+|++++.++. -=-=-+.+|+.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 45568888887642 22336889999999999999943
No 465
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.23 E-value=99 Score=31.60 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=35.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
..||++.-.++. -.+=...+++.|.++|++|.++.++....++..
T Consensus 70 ~k~IllgVtGsI-Aayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGI-AAYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHH-HHHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 457877654433 456789999999999999999999988777753
No 466
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.16 E-value=2e+02 Score=22.01 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++.||+++|..+.+--.-...+=+.+.++|.++.+-....
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~ 41 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSY 41 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecH
Confidence 4679999988777633445677777788898877665554
No 467
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.15 E-value=1.5e+02 Score=30.06 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEe
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~ 144 (471)
.++++.+++.+||++|... .+..+|+++|+|++.+.
T Consensus 367 ~e~~~~i~~~~pDliiG~s--~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNT--YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcCCCEEEECc--cHHHHHHHhCCCEEEee
Confidence 3456667777899999983 24678999999998654
No 468
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=24.07 E-value=2.2e+02 Score=29.27 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHH-HHHhHH
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIA-MDRCRG 107 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 107 (471)
.-+..+|+.|.+.|+++ +++......++..| +.+..+. ...+.|+-............+ ... .+.-.+
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e~G-----I~v~~Vs--k~TgfPEil~GRVKTLHP~Ih--gGiLarr~~~ 79 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAEAG-----VPVTEVS--DYTGFPEMMDGRVKTLHPKVH--GGILARRGDD 79 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHHCC-----CeEEEee--cccCCchhhCCccccCCchhh--hhhhcCCCch
Confidence 34678999999999997 36666666777767 6655553 113444432211111111111 111 122223
Q ss_pred HHHHHHHhC---CCcEEEEcC
Q 012080 108 QVEAVIKAA---KPRLLFYDI 125 (471)
Q Consensus 108 ~l~~~l~~~---~~Dlvi~D~ 125 (471)
. .+.+++. ..|+||+.+
T Consensus 80 ~-~~~l~~~~I~~IDlVvvNL 99 (511)
T TIGR00355 80 D-DADLEEHGIEPIDLVVVNL 99 (511)
T ss_pred H-HHHHHHcCCCceeEEEEec
Confidence 3 4445554 579999994
No 469
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.03 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=23.1
Q ss_pred hhhh-cccCcceeeccCCcch--HHHHH-hhCCcEEecccc
Q 012080 345 MPIL-EHSSVGCFVSHCGFGS--MWESL-MSDCQIVLVPHL 381 (471)
Q Consensus 345 ~~lL-~~~~v~~~ItHgG~~s--~~Eal-~~GvP~v~~P~~ 381 (471)
..|+ .+|++ +|..++.+. +.+-+ ..|+|++.++..
T Consensus 63 E~ll~l~PDl--ii~~~~~~~~~~~~~l~~~gIpvv~i~~~ 101 (186)
T cd01141 63 ELIVALKPDL--VILYGGFQAQTILDKLEQLGIPVLYVNEY 101 (186)
T ss_pred HHHhccCCCE--EEEecCCCchhHHHHHHHcCCCEEEeCCC
Confidence 3344 37888 777655443 55555 689999999854
No 470
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=24.02 E-value=2.5e+02 Score=28.86 Aligned_cols=78 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred cEEeccccCc-h--hhhcccCcceeec-----cCCcchHHHHHhhCCcEEeccccc------cchhhHHHHHHhhcceEE
Q 012080 335 GVVCGEWVEQ-M--PILEHSSVGCFVS-----HCGFGSMWESLMSDCQIVLVPHLG------DQILNTRLLAEELKVAVE 400 (471)
Q Consensus 335 nv~~~~~~pq-~--~lL~~~~v~~~It-----HgG~~s~~Eal~~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~ 400 (471)
++.+.-|.+. . .+++-+++ |+- =||. |=++++++|.+-|+.+..+ |-..++ .. ..|.|..
T Consensus 350 ~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~-~~gtGf~ 423 (487)
T COG0297 350 RVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQ-GVGTGFL 423 (487)
T ss_pred eEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--cc-CceeEEE
Confidence 3444444432 2 34455555 442 3566 5689999999888888632 333333 45 6678877
Q ss_pred eecccCCcccHHHHHHHHHHHhc
Q 012080 401 VEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 401 l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
+.. .+++++..+|++.+.
T Consensus 424 f~~-----~~~~~l~~al~rA~~ 441 (487)
T COG0297 424 FLQ-----TNPDHLANALRRALV 441 (487)
T ss_pred Eec-----CCHHHHHHHHHHHHH
Confidence 775 699999999998874
No 471
>PRK06436 glycerate dehydrogenase; Provisional
Probab=23.98 E-value=4e+02 Score=25.46 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=38.4
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-++++|.++ +.+++-++..|.+++..-+.. .++ ++.. .+.+..++|+.+++
T Consensus 123 ktvgIiG~G~IG-------~~vA~~l~afG~~V~~~~r~~---------~~~---------~~~~-~~~~l~ell~~aDi 176 (303)
T PRK06436 123 KSLGILGYGGIG-------RRVALLAKAFGMNIYAYTRSY---------VND---------GISS-IYMEPEDIMKKSDF 176 (303)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCCC---------ccc---------Cccc-ccCCHHHHHhhCCE
Confidence 568899999996 344444445678765442210 011 1111 14567889999999
Q ss_pred ceeeccCCcch
Q 012080 354 GCFVSHCGFGS 364 (471)
Q Consensus 354 ~~~ItHgG~~s 364 (471)
++.|+-.+.
T Consensus 177 --v~~~lp~t~ 185 (303)
T PRK06436 177 --VLISLPLTD 185 (303)
T ss_pred --EEECCCCCc
Confidence 998887653
No 472
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=23.97 E-value=2.4e+02 Score=29.62 Aligned_cols=89 Identities=7% Similarity=0.034 Sum_probs=47.2
Q ss_pred eCccccCCH-HHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhC-CCcEEeccccCch--hhh-------c
Q 012080 281 FGSQIILEK-KQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQM--PIL-------E 349 (471)
Q Consensus 281 ~Gs~~~~~~-~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~--~lL-------~ 349 (471)
-||...... ..-+.+++.|++.|.+.++-+.++.. ..+.+... .+++... .+.+. ... .
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~---------~~l~dal~~~~~i~~i-~~~hE~~A~~~Adgyar~ 73 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI---------LPLYDALSQSTQIRHI-LARHEQGAGFIAQGMART 73 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc---------HHHHHHHhccCCceEE-EeccHHHHHHHHHHHHHH
Confidence 344444333 33566777888888888877653211 11222221 1233322 11111 111 0
Q ss_pred ccCcceeeccCCc------chHHHHHhhCCcEEecc
Q 012080 350 HSSVGCFVSHCGF------GSMWESLMSDCQIVLVP 379 (471)
Q Consensus 350 ~~~v~~~ItHgG~------~s~~Eal~~GvP~v~~P 379 (471)
+-...++++|.|- +++.||.+.++|+|++.
T Consensus 74 tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 74 TGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred cCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 1233347877764 47899999999999984
No 473
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.90 E-value=1.2e+02 Score=27.72 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHhCCCcEEEEc-Cccc---hHHHHHHcCCceEEEec
Q 012080 111 AVIKAAKPRLLFYD-IAYW---MATISKSLSIKCIKYNV 145 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D-~~~~---~~~~A~~~giP~v~~~~ 145 (471)
+.|.+.+||+||.. .... .-.+.+.+|+|++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
No 474
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=23.86 E-value=6.3e+02 Score=23.92 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
++..|.+.-.++.|-..-+..++..|.++|++|.++..+...
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345566666688899999999999999999999998877543
No 475
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=23.77 E-value=4.1e+02 Score=25.67 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=31.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
=+.++-.++.|-..-++.++.+.+++|..|.|+..+...
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 344556688899999999999999999999999877643
No 476
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=23.68 E-value=68 Score=30.86 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=30.7
Q ss_pred hhhcccCcceeeccCCcchHHHHHh---hCCcEEecccccc
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM---SDCQIVLVPHLGD 383 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~D 383 (471)
+.|..-++..+|.=||.+|+.-|.. +|+|+|.+|-+.|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 4566778888999999999887755 5999999996544
No 477
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.68 E-value=2.5e+02 Score=28.92 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEec
Q 012080 28 MTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLT 73 (471)
Q Consensus 28 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~ 73 (471)
=.-+..+|+.|.+.|+++ +.+......++..| +.+..+.
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~G-----I~v~~V~ 52 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLLAEAG-----IPVTEVS 52 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHHHHCC-----CeeEEee
Confidence 344789999999999997 35566666777767 6555553
No 478
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=23.64 E-value=71 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+||.|+-.|..| ..+|..|.++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 578888666555 467889999999999998654
No 479
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=23.63 E-value=1.6e+02 Score=24.42 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.9
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeC
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALK 311 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (471)
..+|++++||-.....+.++++++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999998888888999988774 3567766543
No 480
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=23.62 E-value=4.3e+02 Score=25.70 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=20.8
Q ss_pred hCCcEEeccccccc-----hhhHHHHHHhhcc-eEEeec
Q 012080 371 SDCQIVLVPHLGDQ-----ILNTRLLAEELKV-AVEVER 403 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ-----~~na~~v~~~~G~-G~~l~~ 403 (471)
.+.|+++-|-+.-- +.-+.... .+|+ |+.++.
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~ 298 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEV 298 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEe
Confidence 46788777754422 24566666 7888 678876
No 481
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=23.44 E-value=1.3e+02 Score=27.97 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
..|.|+-=||.|-..-+..||..|+++|++|.++=.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3566775688999999999999999999999888433
No 482
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=23.44 E-value=5.2e+02 Score=22.83 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=54.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC----c-hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK----A-QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~----~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
|.+++..+-|-..-.+.+|-.-.-+|.+|.++-.-. + +..... ..+..+.|+..+ +......+..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~--~~~~~v~~~~~~--------~g~tw~~~~~ 100 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE--KFGLGVEFHGMG--------EGFTWETQDR 100 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH--hhccceeEEecC--------CceeCCCcCc
Confidence 666688888988888888877777788877763221 1 111111 112336666544 2211111111
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Ccc
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAY 127 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~ 127 (471)
.. -...+........+.+.+-++|+||.| ++.
T Consensus 101 ~~----d~~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 101 EA----DIAAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred HH----HHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 11 113344445566677778899999999 754
No 483
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=23.16 E-value=1.5e+02 Score=26.80 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=61.1
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCch-hhhccCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCChhhHHHHHH
Q 012080 23 FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ-TQLQHFNLHPDLIT-LHPLTVPHVDGLPAGAETASDVPMSSINLLVI 100 (471)
Q Consensus 23 ~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (471)
-+..|+...+.+...++.+|-.+.|+++..-. ..++.+..--..+. ...|- .++..+.....+. . . .
T Consensus 89 qT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w~----~G~lTN~~~l~g~---~-~--~- 157 (251)
T KOG0832|consen 89 QTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKWL----GGLLTNARELFGA---L-V--R- 157 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeeec----cceeecchhhccc---c-c--c-
Confidence 34578889999999999999999999887643 34444310000011 11110 1221110000000 0 0 0
Q ss_pred HHHHhHHHHHHHHHhCCCcEEEE-c-C-ccchHHHHHHcCCceEEEecc
Q 012080 101 AMDRCRGQVEAVIKAAKPRLLFY-D-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~Dlvi~-D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
-....+....++....+|+||+ | . ...++.=|.+++||.|.+.-+
T Consensus 158 -~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 158 -KFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred -cccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 0011233344556667899655 5 5 777888899999999987644
No 484
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=23.15 E-value=4.3e+02 Score=21.77 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=42.1
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe--CCCchhhhccCCCCCCCeEEEEecCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL--PRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPA 82 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (471)
.+=+.+++|+--.|+-.-++- ..++|.+.|..-.+-. +......++..| |...+++|+ ++.+.
T Consensus 12 Isy~~MrFLIThnPtnaTln~---fieELkKygvttvVRVCe~TYdt~~lek~G-----I~Vldw~f~--dg~pp 76 (173)
T KOG2836|consen 12 ISYKNMRFLITHNPTNATLNK---FIEELKKYGVTTVVRVCEPTYDTTPLEKEG-----ITVLDWPFD--DGAPP 76 (173)
T ss_pred eeccceEEEEecCCCchhHHH---HHHHHHhcCCeEEEEecccccCCchhhhcC-----ceEeecccc--cCCCC
Confidence 445678999988887776664 4679999998744433 333344456556 999999875 44443
No 485
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.12 E-value=1.4e+02 Score=25.69 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=30.6
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|.|. .-|+.|=..-...||..|+++|++|.++=.+...
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~ 39 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQA 39 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTS
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccc
Confidence 4455 4588899999999999999999999999776543
No 486
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=23.07 E-value=3.5e+02 Score=23.83 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHhCCCcEEEEc
Q 012080 104 RCRGQVEAVIKAAKPRLLFYD 124 (471)
Q Consensus 104 ~~~~~l~~~l~~~~~Dlvi~D 124 (471)
+..+.+.+.+++.+||+|++=
T Consensus 47 ~s~~~l~~~i~~~qPd~vl~i 67 (207)
T COG2039 47 KSIDALVQAIAEVQPDLVLAI 67 (207)
T ss_pred HHHHHHHHHHHhhCCCeEEEe
Confidence 345677888899999999986
No 487
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=23.07 E-value=74 Score=30.73 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=30.6
Q ss_pred hhhcccCcceeeccCCcchHHHHHh---hCCcEEecccccc
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM---SDCQIVLVPHLGD 383 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~D 383 (471)
+.|..-++..+|.=||.+|+.-|.. .|+|+|.+|-+.|
T Consensus 88 ~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 88 ANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 4556677888999999999987755 5999999996554
No 488
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=22.99 E-value=1.6e+02 Score=27.37 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCcEEEEc-------CccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYD-------IAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D-------~~~~~~~~A~~~giP~v~~~~~ 146 (471)
..+.+.++..++|+|++- ....+..+|+.+|+|++.+..-
T Consensus 101 ~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 101 KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 456677888899999873 2556788999999999977544
No 489
>PRK13236 nitrogenase reductase; Reviewed
Probab=22.97 E-value=1.4e+02 Score=28.36 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=31.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.-|.|.-=|+.|-..-...||..|+++|++|.++=.+.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~ 44 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDP 44 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 334555556889999999999999999999999984443
No 490
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.91 E-value=1.1e+02 Score=32.11 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=38.9
Q ss_pred ccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|+-||=||++.+.+. ++|++.+-.. + +|...+ ++.+++.++|+++++.
T Consensus 348 ~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGin~G------------~--lGFL~~------~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISH--IISIGGDGTVLRASKLVNGEEIPIICINMG------------T--VGFLTE------FSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC------------C--CCcCcc------cCHHHHHHHHHHHHcC
Confidence 3455 9999999999999774 7788877641 2 222222 7788899999999875
No 491
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=22.90 E-value=1.4e+02 Score=29.82 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=30.4
Q ss_pred CeE-EEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPI-VMLP-WFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~i-l~~~-~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++| .|.. -||.|-..-.+.||..|+.+|++|.++=.+.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 354 4443 3889999999999999999999998885544
No 492
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=22.85 E-value=1e+02 Score=24.05 Aligned_cols=30 Identities=23% Similarity=0.528 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 29 TPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 29 ~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
.|.+.|+++|.++|.+|.+.=+--......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~ 46 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIK 46 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHH
Confidence 789999999999999988876665554443
No 493
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=22.80 E-value=6.3e+02 Score=23.58 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEec
Q 012080 105 CRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~ 145 (471)
....+.+.+++.+..+|+++ + .-.+-.+|+..|++.+.+.+
T Consensus 208 ~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 35567778889999999999 4 34455689999999876543
No 494
>PRK10490 sensor protein KdpD; Provisional
Probab=22.67 E-value=1.2e+02 Score=34.12 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
=++||.+-.-|+.|-.+.|+.-|++|+++|++|.+..-+.
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 3578999888999999999999999999999998765553
No 495
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=22.64 E-value=95 Score=29.77 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=30.3
Q ss_pred CeEEEec--CCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 15 FPIVMLP--WFAV-GHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 15 ~~il~~~--~~~~-GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
++|+|+. .... -+..-...|..+.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 3677763 3333 26667889999999999999999988754
No 496
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.55 E-value=8.3e+02 Score=24.85 Aligned_cols=152 Identities=9% Similarity=0.014 Sum_probs=76.7
Q ss_pred ccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchh
Q 012080 267 WLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMP 346 (471)
Q Consensus 267 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ 346 (471)
|++-.. +.++.|+-|.... .-+..|...+.++.++-. . +-+.+.......++....---+..
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~-------rk~~~ll~~ga~v~visp-~---------~~~~~~~l~~~~~i~~~~~~~~~~ 68 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAE-------RKARLLLDAGARLTVNAL-A---------FIPQFTAWADAGMLTLVEGPFDES 68 (457)
T ss_pred EEEcCC-CEEEEECCCHHHH-------HHHHHHHHCCCEEEEEcC-C---------CCHHHHHHHhCCCEEEEeCCCChH
Confidence 444443 6699998888742 222334446777666532 1 223332222223333322222445
Q ss_pred hhcccCcceeeccCCcchHHHHHh-----hCCcEEeccccccchhh-----HHHHHHhhcceEEeecccCCcccHHHHHH
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLM-----SDCQIVLVPHLGDQILN-----TRLLAEELKVAVEVEREENGWFSKESLCK 416 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~-----~GvP~v~~P~~~DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~t~~~l~~ 416 (471)
-|..+.+ +|.--+--.+.+.++ .|+++-+. |++.. -..+. +-++-+.+......-.-...|++
T Consensus 69 dl~~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~~----d~~~~~~f~~pa~~~-~g~l~iaisT~G~sP~~a~~lr~ 141 (457)
T PRK10637 69 LLDTCWL--AIAATDDDAVNQRVSEAAEARRIFCNVV----DAPKAASFIMPSIID-RSPLMVAVSSGGTSPVLARLLRE 141 (457)
T ss_pred HhCCCEE--EEECCCCHHHhHHHHHHHHHcCcEEEEC----CCcccCeEEEeeEEe-cCCEEEEEECCCCCcHHHHHHHH
Confidence 5666666 666666555555443 46665443 33222 22222 33344445543212233466888
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 417 AIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 417 ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
.|++++.. +...+-+.+.++++.+++.
T Consensus 142 ~ie~~~~~---~~~~~~~~~~~~R~~~k~~ 168 (457)
T PRK10637 142 KLESLLPQ---HLGQVAKYAGQLRGRVKQQ 168 (457)
T ss_pred HHHHhcch---hHHHHHHHHHHHHHHHHHh
Confidence 88888832 2335666777777777665
No 497
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=22.43 E-value=8e+02 Score=28.27 Aligned_cols=40 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCCeEEEecCCCc--cC----HHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLPWFAV--GH----MTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~~~~--GH----~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+-.+|+++-.+.. |+ =+....++++|++.|++|.++.+..
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 3458888855543 43 3467789999999999999887665
No 498
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.38 E-value=1.3e+02 Score=29.73 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCeEEE-e-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVM-L-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~-~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+++|+. . .-||.|-..-...||..|+.+|++|.++=.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp 143 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP 143 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 345444 4 44888999999999999999999998885554
No 499
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=22.37 E-value=1.3e+02 Score=25.94 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEec
Q 012080 113 IKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 113 l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~ 145 (471)
|-+.+||+||.. . ......-.++.|+|++.+..
T Consensus 56 l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~ 90 (195)
T cd01143 56 IVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPA 90 (195)
T ss_pred HhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCC
Confidence 345689999987 3 22234455678999886643
No 500
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=22.25 E-value=3.3e+02 Score=23.91 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=18.5
Q ss_pred eEEEecCCCc-c-CHHHHHHHHHHHHhC
Q 012080 16 PIVMLPWFAV-G-HMTPFLHLSNKLAEK 41 (471)
Q Consensus 16 ~il~~~~~~~-G-H~~p~~~la~~L~~r 41 (471)
+|++--++-+ | ..||...++++|.+.
T Consensus 2 ~vLvTGF~PF~~~~~NpS~~~v~~L~~~ 29 (194)
T cd00501 2 KVLVTGFGPFGGEPVNPSWEAVKELPKL 29 (194)
T ss_pred EEEEEecCCCCCCCCChHHHHHHhcccc
Confidence 5776544333 3 789999999999664
Done!