Query 012080
Match_columns 471
No_of_seqs 131 out of 1162
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 21:13:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 8.5E-63 2.9E-67 492.5 36.1 426 12-461 11-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 7.3E-59 2.5E-63 471.7 41.4 431 12-462 4-469 (480)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 7.8E-59 2.7E-63 472.9 34.3 431 12-463 6-480 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 5.7E-56 1.9E-60 447.6 37.6 424 11-461 4-451 (456)
5 2acv_A Triterpene UDP-glucosyl 100.0 2.1E-56 7.2E-61 451.9 34.3 421 13-461 8-462 (463)
6 2iya_A OLEI, oleandomycin glyc 100.0 4.6E-46 1.6E-50 374.0 34.3 402 12-461 10-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 1.4E-45 4.9E-50 367.5 24.0 364 12-458 20-397 (400)
8 1iir_A Glycosyltransferase GTF 100.0 1.7E-42 5.9E-47 346.9 28.6 377 15-461 1-400 (415)
9 3rsc_A CALG2; TDP, enediyne, s 100.0 2.5E-41 8.7E-46 338.5 30.5 392 10-461 16-413 (415)
10 1rrv_A Glycosyltransferase GTF 100.0 2.7E-41 9.2E-46 338.4 29.1 375 15-456 1-395 (416)
11 3h4t_A Glycosyltransferase GTF 100.0 1.6E-40 5.5E-45 331.3 29.7 372 15-461 1-382 (404)
12 3ia7_A CALG4; glycosysltransfe 100.0 9.5E-40 3.2E-44 325.5 33.0 393 13-462 3-399 (402)
13 2iyf_A OLED, oleandomycin glyc 100.0 9.1E-39 3.1E-43 321.5 29.9 389 13-462 6-400 (430)
14 2yjn_A ERYCIII, glycosyltransf 100.0 2E-38 6.8E-43 320.0 30.0 379 12-462 18-436 (441)
15 2p6p_A Glycosyl transferase; X 100.0 5.9E-39 2E-43 318.0 24.6 362 15-461 1-379 (384)
16 3oti_A CALG3; calicheamicin, T 100.0 3.4E-36 1.2E-40 299.7 28.1 364 7-460 13-396 (398)
17 4fzr_A SSFS6; structural genom 100.0 8.1E-37 2.8E-41 304.2 21.2 364 11-456 12-395 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 4.7E-34 1.6E-38 283.5 30.9 359 15-460 2-387 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 6.6E-33 2.2E-37 277.1 29.2 366 11-461 17-408 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 4.8E-29 1.7E-33 244.5 28.5 345 15-468 3-363 (365)
21 2o6l_A UDP-glucuronosyltransfe 99.9 1.5E-27 5.2E-32 208.1 15.0 165 258-445 5-170 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 2.4E-20 8.2E-25 182.6 28.6 343 15-466 7-360 (364)
23 3hbm_A UDP-sugar hydrolase; PS 99.6 3.9E-14 1.3E-18 132.0 19.7 116 274-403 157-274 (282)
24 2jzc_A UDP-N-acetylglucosamine 99.6 1.2E-14 4.3E-19 129.8 11.1 138 273-422 27-197 (224)
25 3c48_A Predicted glycosyltrans 99.5 8.1E-11 2.8E-15 117.7 31.6 352 12-442 18-408 (438)
26 1v4v_A UDP-N-acetylglucosamine 99.5 3.2E-12 1.1E-16 125.3 19.4 310 13-425 4-335 (376)
27 1vgv_A UDP-N-acetylglucosamine 99.4 2.1E-12 7.3E-17 126.9 16.7 352 15-470 1-383 (384)
28 3okp_A GDP-mannose-dependent a 99.4 5.5E-11 1.9E-15 116.9 25.5 347 12-464 2-380 (394)
29 3fro_A GLGA glycogen synthase; 99.4 4.5E-10 1.5E-14 112.0 29.6 387 13-467 1-434 (439)
30 3ot5_A UDP-N-acetylglucosamine 99.4 3.8E-11 1.3E-15 118.6 20.2 310 13-425 26-362 (403)
31 2gek_A Phosphatidylinositol ma 99.4 4.2E-10 1.4E-14 111.1 27.7 344 12-465 18-385 (406)
32 3dzc_A UDP-N-acetylglucosamine 99.3 2.1E-11 7.1E-16 120.3 16.6 315 12-425 23-368 (396)
33 2jjm_A Glycosyl transferase, g 99.3 2.3E-09 8E-14 105.5 31.2 352 14-465 15-387 (394)
34 2r60_A Glycosyl transferase, g 99.3 5.2E-10 1.8E-14 113.9 25.2 363 12-442 5-441 (499)
35 2iw1_A Lipopolysaccharide core 99.2 4.1E-10 1.4E-14 109.9 17.7 331 15-443 1-355 (374)
36 3beo_A UDP-N-acetylglucosamine 99.2 7.1E-10 2.4E-14 108.3 18.2 310 13-425 7-343 (375)
37 4hwg_A UDP-N-acetylglucosamine 99.1 8E-10 2.7E-14 108.2 16.0 314 12-425 7-343 (385)
38 2x6q_A Trehalose-synthase TRET 99.1 7.8E-08 2.7E-12 95.2 27.9 113 333-463 292-414 (416)
39 1rzu_A Glycogen synthase 1; gl 99.0 7.9E-08 2.7E-12 97.3 26.8 171 276-470 292-482 (485)
40 2iuy_A Avigt4, glycosyltransfe 99.0 2.8E-09 9.7E-14 102.7 15.0 125 277-423 164-307 (342)
41 2qzs_A Glycogen synthase; glyc 98.9 9.9E-07 3.4E-11 89.1 27.5 165 276-467 293-480 (485)
42 3s28_A Sucrose synthase 1; gly 98.8 3.2E-07 1.1E-11 97.4 20.4 95 333-440 639-749 (816)
43 3oy2_A Glycosyltransferase B73 98.8 3.6E-06 1.2E-10 83.0 26.2 112 336-464 256-391 (413)
44 2vsy_A XCC0866; transferase, g 98.5 4.2E-05 1.4E-09 78.7 26.5 119 334-463 434-559 (568)
45 2hy7_A Glucuronosyltransferase 98.4 9.8E-05 3.3E-09 72.7 26.1 75 333-425 264-353 (406)
46 2f9f_A First mannosyl transfer 98.4 1.6E-06 5.5E-11 74.9 11.3 130 276-425 24-163 (177)
47 2xci_A KDO-transferase, 3-deox 98.4 0.00014 4.7E-09 70.7 24.5 96 335-442 261-362 (374)
48 3q3e_A HMW1C-like glycosyltran 98.3 0.0004 1.4E-08 70.6 25.6 150 275-437 441-600 (631)
49 3qhp_A Type 1 capsular polysac 97.7 0.00013 4.4E-09 61.7 9.5 94 335-443 57-158 (166)
50 4gyw_A UDP-N-acetylglucosamine 97.5 0.0014 4.8E-08 69.2 15.9 140 274-425 522-669 (723)
51 2bfw_A GLGA glycogen synthase; 97.5 0.0024 8.3E-08 55.5 14.8 94 335-442 96-198 (200)
52 3tov_A Glycosyl transferase fa 97.4 0.035 1.2E-06 53.0 22.5 107 10-142 4-115 (349)
53 3rhz_A GTF3, nucleotide sugar 97.3 0.00065 2.2E-08 64.8 8.2 108 335-457 215-334 (339)
54 1psw_A ADP-heptose LPS heptosy 97.1 0.044 1.5E-06 52.1 19.3 101 15-142 1-106 (348)
55 2gt1_A Lipopolysaccharide hept 96.8 0.068 2.3E-06 50.3 17.6 45 15-59 1-47 (326)
56 2x0d_A WSAF; GT4 family, trans 95.8 0.038 1.3E-06 54.1 9.8 79 334-425 295-380 (413)
57 3vue_A GBSS-I, granule-bound s 94.1 0.66 2.3E-05 46.9 14.0 136 274-423 326-476 (536)
58 2wqk_A 5'-nucleotidase SURE; S 94.0 0.32 1.1E-05 43.7 10.0 114 14-146 1-128 (251)
59 2phj_A 5'-nucleotidase SURE; S 93.0 0.64 2.2E-05 41.5 10.1 113 15-146 2-128 (251)
60 3auf_A Glycinamide ribonucleot 92.1 1.9 6.5E-05 38.0 12.0 114 4-147 12-133 (229)
61 1g5t_A COB(I)alamin adenosyltr 89.5 5.2 0.00018 34.2 11.9 97 13-126 27-130 (196)
62 3nb0_A Glycogen [starch] synth 89.2 1.3 4.5E-05 45.6 9.2 89 346-442 514-616 (725)
63 1uqt_A Alpha, alpha-trehalose- 88.3 3.7 0.00013 40.7 11.7 107 338-463 336-454 (482)
64 3t5t_A Putative glycosyltransf 88.2 22 0.00074 35.2 22.2 109 335-462 353-472 (496)
65 2ywr_A Phosphoribosylglycinami 85.4 5.6 0.00019 34.6 10.0 104 14-147 1-112 (216)
66 1l5x_A SurviVal protein E; str 84.5 4.1 0.00014 37.0 8.8 102 27-146 12-128 (280)
67 2e6c_A 5'-nucleotidase SURE; S 83.2 11 0.00036 33.5 10.8 104 27-146 12-130 (244)
68 3av3_A Phosphoribosylglycinami 83.0 10 0.00035 32.9 10.5 104 14-147 3-114 (212)
69 3rfo_A Methionyl-tRNA formyltr 82.4 6.7 0.00023 36.4 9.6 98 11-147 1-114 (317)
70 3iqw_A Tail-anchored protein t 82.0 7.4 0.00025 36.4 9.9 44 12-55 13-57 (334)
71 3tqr_A Phosphoribosylglycinami 81.3 9 0.00031 33.2 9.5 108 10-147 1-115 (215)
72 1j9j_A Stationary phase surviV 80.5 4.3 0.00015 36.1 7.2 103 27-145 12-128 (247)
73 2x0d_A WSAF; GT4 family, trans 78.1 1.4 4.8E-05 42.8 3.6 41 12-52 44-89 (413)
74 3vue_A GBSS-I, granule-bound s 77.1 2.4 8.1E-05 42.8 5.1 41 12-52 7-53 (536)
75 4dzz_A Plasmid partitioning pr 76.5 9.1 0.00031 32.4 8.2 38 17-54 4-42 (206)
76 1jkx_A GART;, phosphoribosylgl 76.5 31 0.001 29.8 11.4 102 16-147 2-111 (212)
77 2v4n_A Multifunctional protein 76.0 10 0.00035 33.8 8.3 110 15-145 2-126 (254)
78 2bw0_A 10-FTHFDH, 10-formyltet 74.2 8.6 0.00029 35.9 7.7 101 14-148 22-132 (329)
79 1fmt_A Methionyl-tRNA FMet for 73.9 20 0.00067 33.2 10.1 97 13-148 2-114 (314)
80 1kjn_A MTH0777; hypotethical p 73.5 4.1 0.00014 32.7 4.4 45 15-59 7-53 (157)
81 3lqk_A Dipicolinate synthase s 73.4 4.6 0.00016 34.7 5.2 48 10-58 3-51 (201)
82 3zqu_A Probable aromatic acid 73.2 3.9 0.00013 35.4 4.7 45 13-58 3-47 (209)
83 3dfz_A SIRC, precorrin-2 dehyd 72.6 23 0.00078 30.9 9.6 153 266-446 25-186 (223)
84 3io3_A DEHA2D07832P; chaperone 72.6 18 0.00063 33.9 9.7 43 12-54 15-60 (348)
85 3q0i_A Methionyl-tRNA formyltr 72.3 23 0.00079 32.8 10.1 96 13-147 6-117 (318)
86 3vot_A L-amino acid ligase, BL 71.9 31 0.0011 33.1 11.6 98 10-140 1-101 (425)
87 3da8_A Probable 5'-phosphoribo 71.1 17 0.00058 31.5 8.4 106 12-147 10-121 (215)
88 3igf_A ALL4481 protein; two-do 71.0 2.1 7.2E-05 40.9 2.8 40 14-54 1-41 (374)
89 3ug7_A Arsenical pump-driving 70.7 2.9 0.0001 39.5 3.7 43 12-54 23-66 (349)
90 1meo_A Phosophoribosylglycinam 70.2 49 0.0017 28.4 11.1 102 16-147 2-111 (209)
91 2ejb_A Probable aromatic acid 68.6 5.9 0.0002 33.7 4.8 44 15-59 2-45 (189)
92 3qjg_A Epidermin biosynthesis 67.6 7.4 0.00025 32.6 5.1 43 15-58 6-48 (175)
93 3zq6_A Putative arsenical pump 67.4 32 0.0011 31.7 10.2 39 15-53 14-53 (324)
94 3kcq_A Phosphoribosylglycinami 66.3 24 0.00083 30.5 8.3 101 12-147 6-114 (215)
95 4ds3_A Phosphoribosylglycinami 65.5 37 0.0013 29.2 9.3 104 14-147 7-118 (209)
96 1sbz_A Probable aromatic acid 63.4 6.7 0.00023 33.5 4.1 43 15-58 1-44 (197)
97 3tqq_A Methionyl-tRNA formyltr 62.3 32 0.0011 31.7 8.9 100 14-147 2-112 (314)
98 3dm5_A SRP54, signal recogniti 62.1 48 0.0016 32.2 10.4 42 14-55 100-141 (443)
99 1ccw_A Protein (glutamate muta 60.9 13 0.00044 29.6 5.2 39 14-52 3-41 (137)
100 3nrb_A Formyltetrahydrofolate 60.9 82 0.0028 28.5 11.2 105 12-147 86-197 (287)
101 4dim_A Phosphoribosylglycinami 60.3 33 0.0011 32.6 9.1 88 12-139 5-97 (403)
102 2iz6_A Molybdenum cofactor car 60.2 73 0.0025 26.4 11.1 78 336-423 91-173 (176)
103 4a1f_A DNAB helicase, replicat 60.0 13 0.00046 34.7 5.9 42 16-57 48-89 (338)
104 2yxb_A Coenzyme B12-dependent 59.9 9.9 0.00034 31.3 4.5 41 13-53 17-57 (161)
105 1kjq_A GART 2, phosphoribosylg 58.7 1.2E+02 0.004 28.4 12.7 40 8-52 5-44 (391)
106 2a3d_A Protein (de novo three- 58.2 12 0.0004 24.2 3.5 31 428-458 3-33 (73)
107 1mvl_A PPC decarboxylase athal 57.9 14 0.00047 31.9 5.2 45 13-59 18-62 (209)
108 1g63_A Epidermin modifying enz 57.8 11 0.00036 31.8 4.3 43 15-58 3-45 (181)
109 2i2c_A Probable inorganic poly 57.7 6.1 0.00021 35.8 3.1 52 351-424 36-93 (272)
110 3obi_A Formyltetrahydrofolate 57.5 85 0.0029 28.4 10.7 105 12-147 87-198 (288)
111 3mcu_A Dipicolinate synthase, 57.0 11 0.00038 32.5 4.4 42 14-56 5-47 (207)
112 2bln_A Protein YFBG; transfera 56.6 60 0.002 29.7 9.6 40 108-147 66-107 (305)
113 1y80_A Predicted cobalamin bin 56.2 15 0.00052 31.5 5.3 42 13-54 87-128 (210)
114 2r8r_A Sensor protein; KDPD, P 54.6 17 0.00057 31.8 5.2 39 14-52 6-44 (228)
115 3mc3_A DSRE/DSRF-like family p 54.2 25 0.00087 27.6 5.9 42 14-55 15-59 (134)
116 3to5_A CHEY homolog; alpha(5)b 53.9 20 0.0007 28.2 5.3 37 111-147 51-97 (134)
117 3gl9_A Response regulator; bet 53.9 22 0.00077 26.8 5.5 39 109-147 38-86 (122)
118 3o1l_A Formyltetrahydrofolate 53.8 95 0.0033 28.3 10.4 105 12-147 103-213 (302)
119 1yt5_A Inorganic polyphosphate 53.6 8.5 0.00029 34.5 3.3 53 350-424 41-96 (258)
120 2lpm_A Two-component response 53.1 10 0.00035 29.6 3.3 36 109-144 45-86 (123)
121 2i2x_B MTAC, methyltransferase 53.0 19 0.00064 32.2 5.5 41 12-52 121-161 (258)
122 2vqe_B 30S ribosomal protein S 52.9 91 0.0031 27.6 9.7 30 117-146 158-190 (256)
123 3n0v_A Formyltetrahydrofolate 52.8 1.3E+02 0.0045 27.1 11.1 105 12-147 88-198 (286)
124 1qzu_A Hypothetical protein MD 52.1 12 0.0004 32.3 3.8 47 12-59 17-64 (206)
125 1xp8_A RECA protein, recombina 50.8 63 0.0021 30.5 9.0 39 16-54 76-114 (366)
126 3pdi_B Nitrogenase MOFE cofact 50.4 54 0.0018 32.0 8.7 34 108-143 366-399 (458)
127 3ih5_A Electron transfer flavo 49.6 43 0.0015 28.9 7.1 107 14-144 3-122 (217)
128 3n7t_A Macrophage binding prot 48.4 35 0.0012 30.2 6.4 43 10-52 5-58 (247)
129 3lou_A Formyltetrahydrofolate 48.1 1.6E+02 0.0054 26.7 11.9 105 12-147 93-203 (292)
130 2b8t_A Thymidine kinase; deoxy 47.3 31 0.0011 30.0 5.8 40 14-53 11-51 (223)
131 3ezx_A MMCP 1, monomethylamine 47.1 24 0.00084 30.4 5.1 44 12-55 90-133 (215)
132 1p3y_1 MRSD protein; flavoprot 46.8 9.9 0.00034 32.4 2.4 43 14-57 8-50 (194)
133 1jx7_A Hypothetical protein YC 46.3 35 0.0012 25.7 5.4 43 15-57 2-49 (117)
134 3t6k_A Response regulator rece 46.3 37 0.0013 26.1 5.8 38 110-147 41-88 (136)
135 3m6m_D Sensory/regulatory prot 46.3 28 0.00097 27.1 5.1 38 110-147 51-100 (143)
136 3hr8_A Protein RECA; alpha and 45.9 1.4E+02 0.0049 27.9 10.5 38 17-54 64-101 (356)
137 1f0y_A HCDH, L-3-hydroxyacyl-C 45.3 15 0.0005 33.6 3.6 40 7-51 8-47 (302)
138 3f6p_A Transcriptional regulat 45.0 37 0.0013 25.3 5.5 40 108-147 37-83 (120)
139 3lrx_A Putative hydrogenase; a 44.9 34 0.0012 27.7 5.5 38 13-53 22-59 (158)
140 3p9x_A Phosphoribosylglycinami 44.4 1.5E+02 0.0051 25.3 11.0 104 14-147 2-113 (211)
141 1pjq_A CYSG, siroheme synthase 43.8 1.2E+02 0.0041 29.5 10.1 154 267-446 7-168 (457)
142 2ixd_A LMBE-related protein; h 43.8 65 0.0022 28.3 7.4 20 105-124 85-104 (242)
143 3eag_A UDP-N-acetylmuramate:L- 43.6 22 0.00075 32.9 4.6 36 12-51 2-37 (326)
144 3ty2_A 5'-nucleotidase SURE; s 43.1 59 0.002 29.0 6.9 59 12-72 9-67 (261)
145 4b4o_A Epimerase family protei 43.0 19 0.00064 32.6 3.9 34 15-52 1-34 (298)
146 2q5c_A NTRC family transcripti 42.9 77 0.0026 26.7 7.5 39 107-147 132-170 (196)
147 2q6t_A DNAB replication FORK h 42.7 1E+02 0.0035 29.7 9.5 40 16-55 202-242 (444)
148 2pju_A Propionate catabolism o 42.3 38 0.0013 29.5 5.5 29 351-382 64-92 (225)
149 2hy5_A Putative sulfurtransfer 41.7 41 0.0014 26.2 5.3 39 16-54 2-44 (130)
150 3l7i_A Teichoic acid biosynthe 41.3 35 0.0012 35.6 6.1 113 338-464 603-722 (729)
151 2pn1_A Carbamoylphosphate synt 41.2 86 0.003 28.5 8.4 34 13-52 3-38 (331)
152 3gi1_A LBP, laminin-binding pr 41.0 76 0.0026 28.6 7.7 78 42-144 178-258 (286)
153 2lnd_A De novo designed protei 40.9 40 0.0014 23.6 4.3 50 371-423 50-100 (112)
154 3c3m_A Response regulator rece 40.6 52 0.0018 25.2 5.9 37 110-146 40-86 (138)
155 2q5c_A NTRC family transcripti 39.9 27 0.00091 29.7 4.1 30 352-382 51-80 (196)
156 4gi5_A Quinone reductase; prot 39.6 45 0.0015 30.1 5.8 37 12-48 20-59 (280)
157 2dwc_A PH0318, 433AA long hypo 38.3 2.7E+02 0.0091 26.4 12.1 39 10-53 15-53 (433)
158 2bru_C NAD(P) transhydrogenase 38.2 34 0.0012 28.1 4.1 40 14-53 30-72 (186)
159 1u94_A RECA protein, recombina 38.1 1.5E+02 0.005 27.7 9.3 39 16-54 65-103 (356)
160 3lyu_A Putative hydrogenase; t 38.0 55 0.0019 25.9 5.6 36 14-52 18-53 (142)
161 3gt7_A Sensor protein; structu 37.4 53 0.0018 25.8 5.5 39 109-147 43-91 (154)
162 1zgz_A Torcad operon transcrip 36.7 63 0.0022 23.8 5.6 39 109-147 38-83 (122)
163 3l4e_A Uncharacterized peptida 36.4 94 0.0032 26.5 7.1 46 264-309 18-63 (206)
164 1id1_A Putative potassium chan 36.4 32 0.0011 27.5 3.9 32 15-51 4-35 (153)
165 3cmw_A Protein RECA, recombina 36.2 2.1E+02 0.0072 33.0 11.6 42 15-56 384-425 (1706)
166 1tmy_A CHEY protein, TMY; chem 35.9 64 0.0022 23.7 5.5 37 111-147 41-85 (120)
167 3zzm_A Bifunctional purine bio 35.8 49 0.0017 32.5 5.6 50 13-72 8-57 (523)
168 2g1u_A Hypothetical protein TM 35.7 39 0.0013 27.0 4.4 36 12-52 17-52 (155)
169 2fb6_A Conserved hypothetical 35.7 39 0.0013 25.9 4.1 46 9-55 3-52 (117)
170 3nhm_A Response regulator; pro 35.3 71 0.0024 24.0 5.8 38 109-146 39-86 (133)
171 2o6l_A UDP-glucuronosyltransfe 35.1 1.7E+02 0.0058 23.3 9.6 91 15-145 21-114 (170)
172 3mjf_A Phosphoribosylamine--gl 34.8 72 0.0025 30.7 6.8 34 108-141 58-95 (431)
173 3i42_A Response regulator rece 34.8 62 0.0021 24.1 5.3 39 108-146 38-86 (127)
174 3cmw_A Protein RECA, recombina 34.6 3E+02 0.01 31.8 12.5 44 14-57 732-775 (1706)
175 3a10_A Response regulator; pho 34.4 86 0.0029 22.8 6.0 38 109-146 37-82 (116)
176 1wcv_1 SOJ, segregation protei 34.3 34 0.0012 30.2 4.1 41 13-53 4-46 (257)
177 1dbw_A Transcriptional regulat 34.3 59 0.002 24.3 5.1 38 110-147 40-85 (126)
178 2rjn_A Response regulator rece 34.3 62 0.0021 25.3 5.4 41 107-147 41-89 (154)
179 1srr_A SPO0F, sporulation resp 34.0 61 0.0021 24.1 5.1 37 111-147 41-85 (124)
180 3of5_A Dethiobiotin synthetase 33.7 52 0.0018 28.6 5.1 34 15-48 4-39 (228)
181 3b2n_A Uncharacterized protein 33.7 61 0.0021 24.6 5.1 39 109-147 41-87 (133)
182 3q9l_A Septum site-determining 33.4 46 0.0016 29.1 4.9 38 15-52 2-41 (260)
183 3grc_A Sensor protein, kinase; 33.3 69 0.0024 24.4 5.5 39 109-147 42-90 (140)
184 3hv2_A Response regulator/HD d 33.1 66 0.0023 25.1 5.4 39 109-147 50-96 (153)
185 2qzj_A Two-component response 33.1 70 0.0024 24.4 5.4 39 109-147 40-85 (136)
186 3cmu_A Protein RECA, recombina 32.7 2.8E+02 0.0095 32.7 11.9 40 16-55 385-424 (2050)
187 4e7p_A Response regulator; DNA 32.5 66 0.0023 25.0 5.3 41 107-147 56-104 (150)
188 1g3q_A MIND ATPase, cell divis 32.5 53 0.0018 28.2 5.0 38 15-52 2-41 (237)
189 2a9o_A Response regulator; ess 32.3 77 0.0026 23.1 5.4 37 111-147 39-82 (120)
190 3kb6_A D-lactate dehydrogenase 32.2 1.1E+02 0.0038 28.3 7.4 102 274-420 142-246 (334)
191 3rg8_A Phosphoribosylaminoimid 32.2 2E+02 0.0069 23.3 8.5 84 275-381 3-90 (159)
192 3kjh_A CO dehydrogenase/acetyl 32.2 35 0.0012 29.6 3.8 38 15-52 1-38 (254)
193 3giu_A Pyrrolidone-carboxylate 32.1 76 0.0026 27.3 5.7 28 13-40 2-31 (215)
194 3afo_A NADH kinase POS5; alpha 32.0 23 0.00079 33.8 2.6 59 344-424 108-171 (388)
195 3hn2_A 2-dehydropantoate 2-red 31.9 59 0.002 29.7 5.4 41 15-61 3-43 (312)
196 2hy5_B Intracellular sulfur ox 31.8 70 0.0024 25.2 5.1 42 14-55 5-49 (136)
197 3eod_A Protein HNR; response r 31.7 66 0.0023 24.1 5.0 39 109-147 43-89 (130)
198 2gk4_A Conserved hypothetical 31.7 53 0.0018 28.7 4.7 27 25-53 28-54 (232)
199 3qxc_A Dethiobiotin synthetase 31.4 61 0.0021 28.5 5.2 37 12-48 18-56 (242)
200 1psw_A ADP-heptose LPS heptosy 31.4 1.7E+02 0.006 26.5 8.8 88 28-146 199-289 (348)
201 1mb3_A Cell division response 31.2 71 0.0024 23.6 5.1 36 111-146 39-84 (124)
202 3fgn_A Dethiobiotin synthetase 31.1 66 0.0023 28.4 5.4 37 12-48 23-61 (251)
203 1z7e_A Protein aRNA; rossmann 30.9 69 0.0023 32.8 6.3 41 108-148 66-108 (660)
204 1xhf_A DYE resistance, aerobic 30.7 92 0.0031 22.9 5.7 38 110-147 40-84 (123)
205 2pl1_A Transcriptional regulat 30.6 1E+02 0.0035 22.5 5.9 39 109-147 36-82 (121)
206 1u0t_A Inorganic polyphosphate 30.2 21 0.00073 32.8 2.0 56 347-424 72-131 (307)
207 2d1p_A TUSD, hypothetical UPF0 30.2 90 0.0031 24.7 5.5 41 14-54 12-56 (140)
208 3evt_A Phosphoglycerate dehydr 30.1 2.1E+02 0.0073 26.2 8.9 63 274-361 138-200 (324)
209 1eiw_A Hypothetical protein MT 30.1 74 0.0025 24.1 4.7 63 350-423 38-109 (111)
210 1o4v_A Phosphoribosylaminoimid 30.0 2.4E+02 0.0082 23.4 10.0 139 275-446 14-162 (183)
211 2an1_A Putative kinase; struct 29.9 27 0.00092 31.7 2.7 31 347-379 60-94 (292)
212 3ia7_A CALG4; glycosysltransfe 29.7 68 0.0023 30.0 5.7 27 350-378 102-130 (402)
213 2r6j_A Eugenol synthase 1; phe 29.7 57 0.002 29.5 5.0 33 16-52 13-45 (318)
214 2rdm_A Response regulator rece 29.5 97 0.0033 23.1 5.7 39 109-147 41-89 (132)
215 1lss_A TRK system potassium up 29.3 40 0.0014 26.0 3.3 33 14-51 4-36 (140)
216 3lte_A Response regulator; str 29.2 1E+02 0.0035 23.0 5.8 27 109-135 42-71 (132)
217 3cu5_A Two component transcrip 29.2 78 0.0027 24.3 5.1 36 111-146 43-86 (141)
218 3io5_A Recombination and repai 29.0 1.8E+02 0.0063 26.8 8.0 46 16-61 30-79 (333)
219 3llv_A Exopolyphosphatase-rela 29.0 38 0.0013 26.5 3.1 34 14-52 6-39 (141)
220 1pno_A NAD(P) transhydrogenase 29.0 55 0.0019 26.8 3.9 41 13-53 22-65 (180)
221 3cfy_A Putative LUXO repressor 29.0 85 0.0029 23.9 5.3 37 111-147 42-86 (137)
222 2etv_A Iron(III) ABC transport 28.8 43 0.0015 31.1 3.9 30 115-144 94-125 (346)
223 3kht_A Response regulator; PSI 28.7 97 0.0033 23.7 5.7 40 108-147 42-91 (144)
224 4hps_A Pyrrolidone-carboxylate 28.6 47 0.0016 28.9 3.8 30 12-41 21-52 (228)
225 3ro0_A Pyrrolidone-carboxylate 28.4 87 0.003 27.1 5.5 28 14-41 2-31 (223)
226 1qkk_A DCTD, C4-dicarboxylate 28.4 1E+02 0.0035 23.9 5.8 48 371-424 74-121 (155)
227 4b4k_A N5-carboxyaminoimidazol 28.3 2.5E+02 0.0087 23.2 8.1 36 274-311 22-57 (181)
228 3oti_A CALG3; calicheamicin, T 28.3 2.7E+02 0.0093 25.8 9.7 90 15-143 232-325 (398)
229 2zr9_A Protein RECA, recombina 28.2 2.3E+02 0.0078 26.2 8.9 39 16-54 63-101 (349)
230 2qs7_A Uncharacterized protein 28.1 77 0.0026 25.2 4.8 42 16-57 9-51 (144)
231 1o97_C Electron transferring f 28.1 70 0.0024 28.6 5.0 40 107-146 102-148 (264)
232 1d4o_A NADP(H) transhydrogenas 28.0 59 0.002 26.7 3.9 40 14-53 22-64 (184)
233 3n53_A Response regulator rece 28.0 62 0.0021 24.7 4.3 38 109-146 38-85 (140)
234 3f6r_A Flavodoxin; FMN binding 27.9 72 0.0025 25.0 4.7 38 15-52 2-40 (148)
235 3foj_A Uncharacterized protein 27.9 1.2E+02 0.004 21.9 5.6 33 13-49 55-87 (100)
236 3cz5_A Two-component response 27.9 1E+02 0.0036 23.8 5.7 38 110-147 44-89 (153)
237 3nrc_A Enoyl-[acyl-carrier-pro 27.7 2.3E+02 0.0079 24.9 8.7 35 15-52 26-62 (280)
238 3k9g_A PF-32 protein; ssgcid, 27.6 61 0.0021 28.5 4.6 42 10-52 22-65 (267)
239 1hyq_A MIND, cell division inh 27.6 67 0.0023 28.1 4.9 36 17-52 5-41 (263)
240 4hb9_A Similarities with proba 27.3 41 0.0014 31.6 3.6 30 15-49 2-31 (412)
241 1xq1_A Putative tropinone redu 27.3 53 0.0018 28.9 4.1 33 16-51 15-47 (266)
242 2q8p_A Iron-regulated surface 27.3 51 0.0018 28.9 4.0 33 113-145 56-90 (260)
243 2zts_A Putative uncharacterize 27.2 55 0.0019 28.2 4.2 123 15-146 31-181 (251)
244 2yvq_A Carbamoyl-phosphate syn 27.1 68 0.0023 25.5 4.3 95 18-142 27-130 (143)
245 3eul_A Possible nitrate/nitrit 27.0 87 0.003 24.3 5.1 41 107-147 51-99 (152)
246 3rqi_A Response regulator prot 26.8 70 0.0024 26.1 4.6 39 109-147 43-89 (184)
247 2gkg_A Response regulator homo 26.8 97 0.0033 22.8 5.2 47 371-424 79-125 (127)
248 4hn9_A Iron complex transport 26.6 60 0.0021 29.9 4.5 34 112-145 111-145 (335)
249 1p6q_A CHEY2; chemotaxis, sign 26.6 84 0.0029 23.4 4.8 37 110-146 44-90 (129)
250 2fsv_C NAD(P) transhydrogenase 26.5 63 0.0022 27.1 3.9 40 14-53 46-88 (203)
251 3pdi_A Nitrogenase MOFE cofact 26.4 49 0.0017 32.5 4.0 36 106-143 390-425 (483)
252 3u7q_A Nitrogenase molybdenum- 26.4 58 0.002 32.1 4.5 35 107-143 407-441 (492)
253 3u7q_B Nitrogenase molybdenum- 26.3 44 0.0015 33.3 3.7 35 107-143 428-469 (523)
254 3bul_A Methionine synthase; tr 26.3 67 0.0023 32.3 5.0 43 13-55 97-139 (579)
255 2l2q_A PTS system, cellobiose- 26.3 82 0.0028 23.6 4.4 35 14-48 4-38 (109)
256 3ea0_A ATPase, para family; al 26.2 69 0.0024 27.6 4.7 40 14-53 3-45 (245)
257 3e9m_A Oxidoreductase, GFO/IDH 26.2 3.7E+02 0.013 24.3 10.0 128 275-424 7-142 (330)
258 3jte_A Response regulator rece 26.0 1.1E+02 0.0037 23.3 5.5 41 107-147 37-87 (143)
259 3i83_A 2-dehydropantoate 2-red 26.0 64 0.0022 29.5 4.6 41 15-61 3-43 (320)
260 2oxj_A Hybrid alpha/beta pepti 26.0 91 0.0031 17.8 3.3 29 413-445 5-33 (34)
261 1jbe_A Chemotaxis protein CHEY 25.8 1.2E+02 0.0039 22.5 5.5 38 110-147 42-89 (128)
262 1djl_A Transhydrogenase DIII; 25.8 66 0.0022 27.1 3.9 40 14-53 45-87 (207)
263 1cp2_A CP2, nitrogenase iron p 25.7 66 0.0023 28.3 4.5 37 16-52 3-39 (269)
264 2j48_A Two-component sensor ki 25.7 1.1E+02 0.0036 22.0 5.1 38 109-146 37-84 (119)
265 2xj4_A MIPZ; replication, cell 25.6 75 0.0026 28.5 4.9 39 14-52 3-43 (286)
266 3c97_A Signal transduction his 25.6 1.2E+02 0.0042 23.0 5.7 25 111-135 48-75 (140)
267 3ew7_A LMO0794 protein; Q8Y8U8 25.3 52 0.0018 27.7 3.6 34 16-53 2-35 (221)
268 1hjr_A Holliday junction resol 25.2 1.2E+02 0.0042 24.5 5.6 45 103-147 45-105 (158)
269 3e18_A Oxidoreductase; dehydro 25.1 4E+02 0.014 24.4 10.8 126 275-424 7-140 (359)
270 1p9o_A Phosphopantothenoylcyst 25.1 54 0.0018 30.1 3.7 24 30-53 67-90 (313)
271 3k96_A Glycerol-3-phosphate de 25.0 52 0.0018 30.9 3.7 38 10-52 25-62 (356)
272 3h2s_A Putative NADH-flavin re 25.0 53 0.0018 27.8 3.6 33 16-52 2-34 (224)
273 1pq4_A Periplasmic binding pro 25.0 2E+02 0.007 25.8 7.7 75 43-144 190-267 (291)
274 1tvm_A PTS system, galactitol- 25.0 95 0.0033 23.4 4.6 38 12-49 19-57 (113)
275 4egb_A DTDP-glucose 4,6-dehydr 24.9 3.8E+02 0.013 24.1 10.0 34 12-49 22-57 (346)
276 2jk1_A HUPR, hydrogenase trans 24.8 1.7E+02 0.0058 22.0 6.4 49 371-424 71-119 (139)
277 4huj_A Uncharacterized protein 24.7 44 0.0015 28.7 3.0 37 10-51 19-55 (220)
278 3psh_A Protein HI_1472; substr 24.7 65 0.0022 29.4 4.4 33 113-145 80-114 (326)
279 3tsa_A SPNG, NDP-rhamnosyltran 24.6 58 0.002 30.4 4.1 29 350-380 114-143 (391)
280 2f62_A Nucleoside 2-deoxyribos 24.6 1.5E+02 0.0052 24.1 6.0 85 275-379 11-105 (161)
281 1iu8_A Pyrrolidone-carboxylate 24.5 1.8E+02 0.0061 24.7 6.7 26 16-41 2-29 (206)
282 3cg0_A Response regulator rece 24.4 1.2E+02 0.0041 22.8 5.4 37 111-147 48-92 (140)
283 2ph1_A Nucleotide-binding prot 24.4 90 0.0031 27.4 5.1 41 14-54 17-59 (262)
284 1q1v_A DEK protein; winged-hel 24.4 1.7E+02 0.0059 20.0 5.5 51 407-459 10-64 (70)
285 3fwz_A Inner membrane protein 24.3 67 0.0023 25.1 3.8 35 14-53 7-41 (140)
286 1efv_B Electron transfer flavo 24.3 90 0.0031 27.6 5.0 40 107-146 106-152 (255)
287 1kyq_A Met8P, siroheme biosynt 24.2 3.8E+02 0.013 23.8 9.2 88 350-446 106-210 (274)
288 3eme_A Rhodanese-like domain p 24.1 1.1E+02 0.0039 22.1 4.9 33 13-49 55-87 (103)
289 4e5v_A Putative THUA-like prot 24.0 83 0.0028 28.4 4.7 39 12-51 2-43 (281)
290 2ew2_A 2-dehydropantoate 2-red 23.9 52 0.0018 29.7 3.5 33 14-51 3-35 (316)
291 3sz8_A 2-dehydro-3-deoxyphosph 23.8 4E+02 0.014 23.9 10.1 52 370-422 193-270 (285)
292 1a2z_A Pyrrolidone carboxyl pe 23.8 1.4E+02 0.0046 25.8 5.9 26 16-41 3-30 (220)
293 1mio_B Nitrogenase molybdenum 23.8 79 0.0027 30.8 4.9 35 107-143 375-409 (458)
294 2hy6_A General control protein 23.8 88 0.003 17.9 2.9 29 412-444 4-32 (34)
295 3hzh_A Chemotaxis response reg 23.8 1E+02 0.0035 24.1 5.0 40 107-146 71-120 (157)
296 1zh2_A KDP operon transcriptio 23.7 1.1E+02 0.0038 22.2 5.0 35 113-147 41-82 (121)
297 1kgs_A DRRD, DNA binding respo 23.7 1.3E+02 0.0043 25.3 5.9 39 110-148 39-85 (225)
298 3c3g_A Alpha/beta peptide with 23.7 94 0.0032 17.6 3.0 30 412-445 3-32 (33)
299 2qv0_A Protein MRKE; structura 23.6 1.3E+02 0.0046 22.7 5.6 28 109-136 47-77 (143)
300 3cmu_A Protein RECA, recombina 23.5 3.6E+02 0.012 31.8 10.7 86 13-125 1426-1514(2050)
301 4eg0_A D-alanine--D-alanine li 23.5 1.2E+02 0.0042 27.4 6.0 39 14-52 13-55 (317)
302 1uo4_A General control protein 23.5 99 0.0034 17.7 3.1 29 413-445 5-33 (34)
303 4dyv_A Short-chain dehydrogena 23.4 85 0.0029 27.9 4.7 43 6-51 19-61 (272)
304 3dfu_A Uncharacterized protein 23.4 57 0.002 28.5 3.4 35 12-51 4-38 (232)
305 1efp_B ETF, protein (electron 23.4 89 0.003 27.6 4.7 39 108-146 104-149 (252)
306 1e2b_A Enzyme IIB-cellobiose; 23.4 1.4E+02 0.0048 22.2 5.2 39 13-51 2-40 (106)
307 1qkk_A DCTD, C4-dicarboxylate 23.3 79 0.0027 24.7 4.2 38 111-148 41-86 (155)
308 2d1p_B TUSC, hypothetical UPF0 23.2 1.3E+02 0.0043 22.9 5.1 39 16-54 3-44 (119)
309 1xmp_A PURE, phosphoribosylami 23.0 3.1E+02 0.011 22.4 11.2 142 274-445 11-161 (170)
310 2vo1_A CTP synthase 1; pyrimid 23.0 1E+02 0.0034 27.6 4.8 43 12-54 20-65 (295)
311 3f6c_A Positive transcription 22.9 72 0.0025 24.0 3.7 34 113-146 42-83 (134)
312 1x10_A Pyrrolidone-carboxylate 22.9 1.1E+02 0.0036 26.2 5.0 27 15-41 1-29 (208)
313 2j9r_A Thymidine kinase; TK1, 22.9 1.6E+02 0.0055 25.2 6.1 50 3-52 16-66 (214)
314 3md9_A Hemin-binding periplasm 22.8 78 0.0027 27.6 4.4 33 112-144 54-89 (255)
315 4h1h_A LMO1638 protein; MCCF-l 22.7 96 0.0033 28.6 5.0 86 264-365 5-92 (327)
316 1gsa_A Glutathione synthetase; 22.7 64 0.0022 29.0 3.9 38 15-52 2-42 (316)
317 1ys7_A Transcriptional regulat 22.7 1.3E+02 0.0046 25.3 5.8 36 111-146 45-88 (233)
318 3m48_A General control protein 22.7 97 0.0033 17.6 3.0 29 413-445 4-32 (33)
319 2r25_B Osmosensing histidine p 22.7 1.7E+02 0.0057 22.0 5.9 32 116-147 51-91 (133)
320 3cg4_A Response regulator rece 22.7 1.1E+02 0.0038 23.1 4.9 38 108-145 42-89 (142)
321 2qvg_A Two component response 22.6 1.4E+02 0.0049 22.5 5.6 32 116-147 58-99 (143)
322 2b4a_A BH3024; flavodoxin-like 22.6 90 0.0031 23.7 4.3 37 108-144 50-95 (138)
323 3end_A Light-independent proto 22.6 90 0.0031 28.2 4.8 38 15-52 42-79 (307)
324 3dez_A OPRT, oprtase, orotate 22.5 1.4E+02 0.0047 26.3 5.7 36 108-143 89-129 (243)
325 3cx3_A Lipoprotein; zinc-bindi 22.5 2.2E+02 0.0076 25.4 7.4 38 106-143 215-255 (284)
326 1u7z_A Coenzyme A biosynthesis 22.5 1.1E+02 0.0037 26.6 5.0 23 30-52 36-58 (226)
327 2woj_A ATPase GET3; tail-ancho 22.5 89 0.003 29.2 4.8 41 13-53 16-59 (354)
328 3dhn_A NAD-dependent epimerase 22.4 98 0.0034 26.1 4.9 35 14-52 4-38 (227)
329 3to5_A CHEY homolog; alpha(5)b 22.3 1.3E+02 0.0045 23.4 5.1 47 371-423 86-132 (134)
330 4dgk_A Phytoene dehydrogenase; 22.2 42 0.0014 32.9 2.6 33 14-51 1-33 (501)
331 4g6h_A Rotenone-insensitive NA 22.0 55 0.0019 32.3 3.5 36 12-52 40-75 (502)
332 3bfv_A CAPA1, CAPB2, membrane 22.0 1.2E+02 0.0043 26.8 5.6 41 13-53 80-122 (271)
333 3euw_A MYO-inositol dehydrogen 22.0 4.5E+02 0.015 23.8 10.9 126 275-424 6-140 (344)
334 2afh_E Nitrogenase iron protei 22.0 86 0.0029 28.0 4.5 37 16-52 4-40 (289)
335 3r8n_B 30S ribosomal protein S 21.9 72 0.0024 27.6 3.7 30 117-146 149-181 (218)
336 3obb_A Probable 3-hydroxyisobu 21.9 75 0.0026 28.9 4.1 31 14-49 3-33 (300)
337 4dll_A 2-hydroxy-3-oxopropiona 21.9 92 0.0031 28.5 4.8 35 12-51 29-63 (320)
338 3rpe_A MDAB, modulator of drug 21.9 1.1E+02 0.0039 26.2 5.0 40 11-50 22-68 (218)
339 3m3h_A OPRT, oprtase, orotate 21.8 1.4E+02 0.0047 26.1 5.6 36 108-143 77-117 (234)
340 3d3j_A Enhancer of mRNA-decapp 21.8 85 0.0029 28.7 4.4 34 15-51 133-168 (306)
341 3g0o_A 3-hydroxyisobutyrate de 21.7 55 0.0019 29.7 3.1 35 12-51 5-39 (303)
342 3ghy_A Ketopantoate reductase 21.7 62 0.0021 29.9 3.5 43 14-61 3-45 (335)
343 2woo_A ATPase GET3; tail-ancho 21.5 1.2E+02 0.004 27.9 5.4 40 14-53 18-58 (329)
344 3kkl_A Probable chaperone prot 21.5 1.6E+02 0.0056 25.7 6.1 39 14-52 3-52 (244)
345 1o4v_A Phosphoribosylaminoimid 21.5 3.5E+02 0.012 22.4 9.4 104 287-423 52-157 (183)
346 3q9s_A DNA-binding response re 21.5 1.3E+02 0.0044 26.1 5.5 40 108-147 72-118 (249)
347 1vi6_A 30S ribosomal protein S 21.5 65 0.0022 27.6 3.2 30 117-146 115-147 (208)
348 2h78_A Hibadh, 3-hydroxyisobut 21.5 76 0.0026 28.6 4.1 34 13-51 2-35 (302)
349 2w36_A Endonuclease V; hypoxan 21.4 1.5E+02 0.005 25.7 5.5 40 107-146 91-140 (225)
350 3dqp_A Oxidoreductase YLBE; al 21.4 60 0.0021 27.5 3.2 33 16-52 2-34 (219)
351 2r85_A PURP protein PF1517; AT 21.3 81 0.0028 28.7 4.3 33 15-53 3-35 (334)
352 1jzt_A Hypothetical 27.5 kDa p 21.3 75 0.0026 28.0 3.8 34 15-51 59-94 (246)
353 3h4t_A Glycosyltransferase GTF 21.3 2.8E+02 0.0095 25.9 8.3 88 16-143 222-310 (404)
354 2jzc_A UDP-N-acetylglucosamine 21.3 1E+02 0.0034 26.7 4.5 40 14-53 27-73 (224)
355 3r0j_A Possible two component 21.1 1.3E+02 0.0044 26.0 5.4 41 108-148 58-106 (250)
356 3la6_A Tyrosine-protein kinase 21.1 1.3E+02 0.0043 27.1 5.4 40 14-53 91-132 (286)
357 3oet_A Erythronate-4-phosphate 21.0 2.8E+02 0.0096 26.1 7.9 61 274-362 120-180 (381)
358 2qyt_A 2-dehydropantoate 2-red 21.0 35 0.0012 31.0 1.7 36 10-50 4-45 (317)
359 2oqr_A Sensory transduction pr 21.0 1.3E+02 0.0044 25.3 5.4 38 111-148 42-86 (230)
360 3pp8_A Glyoxylate/hydroxypyruv 20.9 3.7E+02 0.013 24.4 8.6 29 274-309 140-168 (315)
361 3nbm_A PTS system, lactose-spe 20.9 1.4E+02 0.0047 22.4 4.7 39 11-49 3-41 (108)
362 3fwy_A Light-independent proto 20.9 1.1E+02 0.0036 28.1 4.9 40 13-52 46-86 (314)
363 1a04_A Nitrate/nitrite respons 20.8 1.3E+02 0.0043 25.1 5.2 36 111-146 45-88 (215)
364 3qvl_A Putative hydantoin race 20.8 4.2E+02 0.014 23.0 10.1 37 15-51 2-39 (245)
365 2o1e_A YCDH; alpha-beta protei 20.7 2.4E+02 0.0081 25.7 7.3 77 42-143 189-268 (312)
366 1yio_A Response regulatory pro 20.7 94 0.0032 25.8 4.3 36 111-146 42-85 (208)
367 3bbn_B Ribosomal protein S2; s 20.7 63 0.0022 28.2 3.1 30 117-146 157-189 (231)
368 3h5i_A Response regulator/sens 20.7 1.8E+02 0.0061 22.0 5.7 36 111-146 43-87 (140)
369 3c3f_A Alpha/beta peptide with 20.6 1.2E+02 0.004 17.3 3.0 29 413-445 5-33 (34)
370 3d3k_A Enhancer of mRNA-decapp 20.6 92 0.0032 27.7 4.3 34 15-51 86-121 (259)
371 3r6d_A NAD-dependent epimerase 20.6 1.3E+02 0.0044 25.3 5.2 36 14-52 4-40 (221)
372 2x5n_A SPRPN10, 26S proteasome 20.5 1.3E+02 0.0043 25.2 5.0 34 17-50 110-143 (192)
373 1y1p_A ARII, aldehyde reductas 20.5 1.1E+02 0.0037 27.8 5.0 35 13-51 10-44 (342)
374 2qsj_A DNA-binding response re 20.4 95 0.0033 24.1 4.1 40 107-146 39-87 (154)
375 3s40_A Diacylglycerol kinase; 20.3 88 0.003 28.4 4.2 26 355-380 66-97 (304)
376 1xjc_A MOBB protein homolog; s 20.3 1.7E+02 0.0058 23.9 5.5 39 14-52 4-42 (169)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=8.5e-63 Score=492.48 Aligned_cols=426 Identities=23% Similarity=0.334 Sum_probs=321.5
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCchhhhccCC-CCCCCeEEEEecCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILLPRKAQTQLQHFN-LHPDLITLHPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (471)
.++.||+++|++++||++|++.||+.|+++| +.|||++++.+...+.+.. .....++|+.+| ++++++.+...
T Consensus 11 ~~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~~~~~i~~~~ip----dglp~~~~~~~ 86 (454)
T 3hbf_A 11 NNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNVH----DGLPKGYVSSG 86 (454)
T ss_dssp -CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSCCCTTEEEEECC----CCCCTTCCCCS
T ss_pred CCCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhcccccCCCCceEEecC----CCCCCCccccC
Confidence 3468999999999999999999999999999 9999999986655543321 113459999998 77887655444
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcccc-CCCCC
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKA--AKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPAR-NVPKD 164 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~-~~~~~ 164 (471)
+.......++........+.+++++++ .++|+||+| +.+|+..+|+++|||++.+++++++..+.+.+... ....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~ 166 (454)
T 3hbf_A 87 NPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTG 166 (454)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcC
Confidence 322222233333333444555555544 378999999 79999999999999999999998877665443221 10000
Q ss_pred CC-CCccccCCCCCCCCCCcccccccccccccccc--cCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc
Q 012080 165 RP-VTEAELAMPPAGYPSDTIVLRRHEARELTFIS--FPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY 241 (471)
Q Consensus 165 ~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 241 (471)
.. ....+.....+++|. +. .+.++... ........++.+........+.+++||+++||+++++.+++.+
T Consensus 167 ~~~~~~~~~~~~iPg~p~----~~---~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~ 239 (454)
T 3hbf_A 167 SKEVHDVKSIDVLPGFPE----LK---ASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF 239 (454)
T ss_dssp HHHHTTSSCBCCSTTSCC----BC---GGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS
T ss_pred CCccccccccccCCCCCC----cC---hhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcC
Confidence 00 000000011233332 33 33343221 1222234556666677788999999999999999999999877
Q ss_pred CCCeEEeccCCCCCC--CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcc
Q 012080 242 NKPVFLTGPVLHEPA--KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTV 319 (471)
Q Consensus 242 ~~~v~~vGp~~~~~~--~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~ 319 (471)
+++++|||+..... ....+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|+|+++...
T Consensus 240 -~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~----- 313 (454)
T 3hbf_A 240 -KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP----- 313 (454)
T ss_dssp -SCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH-----
T ss_pred -CCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc-----
Confidence 58999999875322 1233567999999988889999999999998999999999999999999999998531
Q ss_pred cccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHh-hcce
Q 012080 320 EEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE-LKVA 398 (471)
Q Consensus 320 ~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~G 398 (471)
.+.+|++|.++.. .|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||++++ + +|+|
T Consensus 314 ~~~lp~~~~~~~~-~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~-~~~g~G 391 (454)
T 3hbf_A 314 KEKLPKGFLERTK-TKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTE-SVLEIG 391 (454)
T ss_dssp HHHSCTTHHHHTT-TTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH-TTSCSE
T ss_pred hhcCCHhHHhhcC-CceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHH-HhhCee
Confidence 1348888877764 46666689999999999999999999999999999999999999999999999999999 7 7999
Q ss_pred EEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHH
Q 012080 399 VEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMR 461 (471)
Q Consensus 399 ~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~ 461 (471)
+.++... +++++|+++|+++|.+ +++++||+||+++++++++. |++.+.+++|++.+.
T Consensus 392 v~l~~~~---~~~~~l~~av~~ll~~--~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 392 VGVDNGV---LTKESIKKALELTMSS--EKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp EECGGGS---CCHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred EEecCCC---CCHHHHHHHHHHHHCC--ChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 9998644 9999999999999975 57889999999999998655 455588888888764
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=7.3e-59 Score=471.66 Aligned_cols=431 Identities=22% Similarity=0.335 Sum_probs=311.0
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCC--chhhhccCC-CCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRK--AQTQLQHFN-LHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~--~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.+++||+++|++++||++|++.||++|++| ||+|||++++. +...+++.. ....+++|+.++... .+..
T Consensus 4 ~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~---~~~~---- 76 (480)
T 2vch_A 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSVFLPPVD---LTDL---- 76 (480)
T ss_dssp --CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-CCTTEEEEECCCCC---CTTS----
T ss_pred CCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhccccCCCceEEEcCCCC---CCCC----
Confidence 355799999999999999999999999998 99999999987 344443311 112359999987431 1111
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHh----CCC-cEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc-cccC
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKA----AKP-RLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV-PARN 160 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~-Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-p~~~ 160 (471)
.. .......+........+.+++++++ .++ |+||+| +..|+..+|+++|||++.+++++......+.+ |...
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 155 (480)
T 2vch_A 77 SS-STRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD 155 (480)
T ss_dssp CT-TCCHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred CC-chhHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHH
Confidence 11 1122333334455566777777776 378 999999 78889999999999999999988765443321 2100
Q ss_pred CCCCCCCCcccc--CCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHH
Q 012080 161 VPKDRPVTEAEL--AMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIA 238 (471)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 238 (471)
.. .. ....+. ....+++|+ +....++.. +..........+.+....+....++++|++.+++++....+.
T Consensus 156 ~~-~~-~~~~~~~~~~~~Pg~~p----~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~ 227 (480)
T 2vch_A 156 ET-VS-CEFRELTEPLMLPGCVP----VAGKDFLDP--AQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ 227 (480)
T ss_dssp HH-CC-SCGGGCSSCBCCTTCCC----BCGGGSCGG--GSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHH
T ss_pred hc-CC-CcccccCCcccCCCCCC----CChHHCchh--hhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHH
Confidence 00 00 000000 001123322 111111111 111111122333344445667788999999999988777776
Q ss_pred HH---cCCCeEEeccCCCCCCC---CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCC
Q 012080 239 RQ---YNKPVFLTGPVLHEPAK---TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKP 312 (471)
Q Consensus 239 ~~---~~~~v~~vGp~~~~~~~---~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 312 (471)
+. + +++++|||+...... ...+.++.+||++++++++|||||||+...+.+++.+++.+|+.++.+|+|+++.
T Consensus 228 ~~~~~~-~~v~~vGpl~~~~~~~~~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~ 306 (480)
T 2vch_A 228 EPGLDK-PPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRS 306 (480)
T ss_dssp SCCTTC-CCEEECCCCCCCSCSCC-----CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred hcccCC-CcEEEEeccccccccccCccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECC
Confidence 41 3 589999999765322 2356789999999877899999999998888999999999999999999999986
Q ss_pred CCCC-----------CcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc
Q 012080 313 PTGA-----------STVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL 381 (471)
Q Consensus 313 ~~~~-----------~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~ 381 (471)
.... ......+|++|.++.++.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~ 386 (480)
T 2vch_A 307 PSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLY 386 (480)
T ss_dssp CCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCS
T ss_pred ccccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEecccc
Confidence 5311 12223489999999888888888899999999999999999999999999999999999999999
Q ss_pred ccchhhHHHH-HHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC---CCc-hhHHHHHH
Q 012080 382 GDQILNTRLL-AEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS---PGF-VSGYIDKF 456 (471)
Q Consensus 382 ~DQ~~na~~v-~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~---~~~-~~~~i~~~ 456 (471)
+||+.||+++ + ++|+|+.++..+.+.+|+++|+++|+++|.+ +++++||+||+++++++++ +|| +.+.+++|
T Consensus 387 ~DQ~~na~~l~~-~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~--~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~ 463 (480)
T 2vch_A 387 AEQKMNAVLLSE-DIRAALRPRAGDDGLVRREEVARVVKGLMEG--EEGKGVRNKMKELKEAACRVLKDDGTSTKALSLV 463 (480)
T ss_dssp TTHHHHHHHHHH-TTCCEECCCCCTTSCCCHHHHHHHHHHHHTS--THHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHH
T ss_pred ccchHHHHHHHH-HhCeEEEeecccCCccCHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999997 7 9999999986422359999999999999973 3556999999999999887 555 45888999
Q ss_pred HHHHHh
Q 012080 457 VQNMRG 462 (471)
Q Consensus 457 ~~~~~~ 462 (471)
++.+.+
T Consensus 464 v~~~~~ 469 (480)
T 2vch_A 464 ALKWKA 469 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988865
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=7.8e-59 Score=472.94 Aligned_cols=431 Identities=19% Similarity=0.311 Sum_probs=305.4
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCC-----CCCeEEEEecCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLH-----PDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
.++.||+++|+++.||++|++.||++|++|||+|||++++.+...+.+.... ..+++|+.++ +++++. +.
T Consensus 6 ~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~lp~~-~~ 80 (482)
T 2pq6_A 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIP----DGLTPM-EG 80 (482)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEEC----CCCC-----
T ss_pred CCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECC----CCCCCc-cc
Confidence 3457999999999999999999999999999999999999876655432100 0259999987 455542 10
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHh-------CCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc-c
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKA-------AKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV-P 157 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-p 157 (471)
..+.......++....+.+.+.+++++++ .++|+||+| +..|+..+|+++|||++.+++++......+.+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 160 (482)
T 2pq6_A 81 DGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFR 160 (482)
T ss_dssp -----CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHH
T ss_pred ccCcchhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHH
Confidence 00111122233333224445556666653 489999999 78899999999999999999988765443321 1
Q ss_pred ----ccCCCCCCCC--Cc---cccCCCCCCCCCCcccccccccccccccccCC---CCchhHHHHHHhhhccCCEEEEcC
Q 012080 158 ----ARNVPKDRPV--TE---AELAMPPAGYPSDTIVLRRHEARELTFISFPF---GEGMSFYERITTSLKESDAISIRT 225 (471)
Q Consensus 158 ----~~~~~~~~~~--~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~ 225 (471)
.++.+..... .. .......++++. +. ...++.+.... .....++.+........+.+++|+
T Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt 233 (482)
T 2pq6_A 161 SFVERGIIPFKDESYLTNGCLETKVDWIPGLKN----FR---LKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233 (482)
T ss_dssp HHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS----CB---GGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESS
T ss_pred HHHhcCCCCCccccccccccccCccccCCCCCC----Cc---hHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcC
Confidence 1111100000 00 000000112221 11 12222111111 112233334444566789999999
Q ss_pred ccccchhHHHHHHHHcCCCeEEeccCCCC--CC-----------C-CCChhhhhhccCCCCCCcEEEEEeCccccCCHHH
Q 012080 226 CHEIEGDLCEYIARQYNKPVFLTGPVLHE--PA-----------K-TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQ 291 (471)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~v~~vGp~~~~--~~-----------~-~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~ 291 (471)
+++||++.++.+++.+ +++++|||+... .. . +..+.++.+||++++++++|||||||+...+.++
T Consensus 234 ~~~le~~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~ 312 (482)
T 2pq6_A 234 FNELESDVINALSSTI-PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQ 312 (482)
T ss_dssp CGGGGHHHHHHHHTTC-TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHH
T ss_pred hHHHhHHHHHHHHHhC-CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHH
Confidence 9999999999999888 689999998642 11 0 0123468899999877899999999998888888
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhh
Q 012080 292 FQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMS 371 (471)
Q Consensus 292 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~ 371 (471)
+.+++.+|+.++.+|+|+++....... ...+|+++.++. +.|+++.+|+||.++|+|+++++|||||||||++|++++
T Consensus 313 ~~~~~~~l~~~~~~~l~~~~~~~~~~~-~~~l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~ 390 (482)
T 2pq6_A 313 LLEFAWGLANCKKSFLWIIRPDLVIGG-SVIFSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICA 390 (482)
T ss_dssp HHHHHHHHHHTTCEEEEECCGGGSTTT-GGGSCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcCCccccc-cccCcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHc
Confidence 999999999999999999975311111 122788887765 457888889999999999999999999999999999999
Q ss_pred CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----C
Q 012080 372 DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----G 447 (471)
Q Consensus 372 GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~ 447 (471)
|||||++|+++||+.||+++++++|+|+.++ .+ +++++|.++|+++|.|+ ++++||+||+++++.+++. |
T Consensus 391 GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~-~~---~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~gG 464 (482)
T 2pq6_A 391 GVPMLCWPFFADQPTDCRFICNEWEIGMEID-TN---VKREELAKLINEVIAGD--KGKKMKQKAMELKKKAEENTRPGG 464 (482)
T ss_dssp TCCEEECCCSTTHHHHHHHHHHTSCCEEECC-SS---CCHHHHHHHHHHHHTSH--HHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCEEecCcccchHHHHHHHHHHhCEEEEEC-CC---CCHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999963799999998 44 99999999999999864 4678999999999999774 5
Q ss_pred chhHHHHHHHHHHHhc
Q 012080 448 FVSGYIDKFVQNMRGL 463 (471)
Q Consensus 448 ~~~~~i~~~~~~~~~~ 463 (471)
++.+.+++|++.+.++
T Consensus 465 ss~~~l~~~v~~~~~~ 480 (482)
T 2pq6_A 465 CSYMNLNKVIKDVLLK 480 (482)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhc
Confidence 5668899999887543
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=5.7e-56 Score=447.58 Aligned_cols=424 Identities=22% Similarity=0.348 Sum_probs=297.9
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCe--EEEEeCCCchhhhccCCC--CCCCeEEEEecCCCCCCCCCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHK--ITILLPRKAQTQLQHFNL--HPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~--Vt~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
..++.||+++|++++||++|++.||+.|++|||+ ||+++++.....+.+... ...+++|+.++ ++++++.+.
T Consensus 4 ~~~~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~----~glp~~~~~ 79 (456)
T 2c1x_A 4 TTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDIS----DGVPEGYVF 79 (456)
T ss_dssp ---CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECC----CCCCTTCCC
T ss_pred CCCCCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCC----CCCCCcccc
Confidence 3456799999999999999999999999999755 577887654433322111 02358998886 566655322
Q ss_pred CCCCChhhHHHHHHHH-HHhHHHHHHHHHh--CCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhc-cc---
Q 012080 87 ASDVPMSSINLLVIAM-DRCRGQVEAVIKA--AKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALV-PA--- 158 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~--~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~-p~--- 158 (471)
. +........+.... ....+.+.+++++ .+||+||+| +..|+..+|+++|||++.++++++.....+.+ +.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 158 (456)
T 2c1x_A 80 A-GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIRE 158 (456)
T ss_dssp C-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHH
T ss_pred c-CChHHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHh
Confidence 1 12222222232222 2223334444433 589999999 78899999999999999999987755433221 10
Q ss_pred --cCCCCCCCCCccccCCCCCCCCCCcccccccccccccc-cc-cCCC-CchhHHHHHHhhhccCCEEEEcCccccchhH
Q 012080 159 --RNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTF-IS-FPFG-EGMSFYERITTSLKESDAISIRTCHEIEGDL 233 (471)
Q Consensus 159 --~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 233 (471)
+...... ...+.....++++. .....++. +. .... ....++.+........+.+++|+++++|++.
T Consensus 159 ~~~~~~~~~--~~~~~~~~~pg~~~-------~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~ 229 (456)
T 2c1x_A 159 KIGVSGIQG--REDELLNFIPGMSK-------VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSL 229 (456)
T ss_dssp HHCSSCCTT--CTTCBCTTSTTCTT-------CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHH
T ss_pred ccCCccccc--ccccccccCCCCCc-------ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHH
Confidence 0000000 00000000122221 12222221 11 0111 1123344444445678999999999999998
Q ss_pred HHHHHHHcCCCeEEeccCCCCCCC--CCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeC
Q 012080 234 CEYIARQYNKPVFLTGPVLHEPAK--TPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALK 311 (471)
Q Consensus 234 ~~~~~~~~~~~v~~vGp~~~~~~~--~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (471)
.+.+++.+ +++++|||+...... ...+.++.+|++.++++++|||||||+...+.+++.+++.+|+.++.+|+|+++
T Consensus 230 ~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~ 308 (456)
T 2c1x_A 230 TNDLKSKL-KTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR 308 (456)
T ss_dssp HHHHHHHS-SCEEECCCHHHHC---------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHhcC-CCEEEecCcccCcccccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEEC
Confidence 88888877 589999998653221 122346889999887789999999999988888999999999999999999997
Q ss_pred CCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHH
Q 012080 312 PPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLL 391 (471)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v 391 (471)
... .+.+|+++.++. +.|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 309 ~~~-----~~~l~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l 382 (456)
T 2c1x_A 309 DKA-----RVHLPEGFLEKT-RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV 382 (456)
T ss_dssp GGG-----GGGSCTTHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH
T ss_pred Ccc-----hhhCCHHHHhhc-CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHH
Confidence 421 123788777665 35778888999999999999999999999999999999999999999999999999999
Q ss_pred HHhh-cceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC----CchhHHHHHHHHHHH
Q 012080 392 AEEL-KVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP----GFVSGYIDKFVQNMR 461 (471)
Q Consensus 392 ~~~~-G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~----~~~~~~i~~~~~~~~ 461 (471)
+ +. |+|+.++... +++++|+++|+++|.|+ ++++||+||+++++.+++. |++.+.+++|++.+.
T Consensus 383 ~-~~~g~g~~l~~~~---~~~~~l~~~i~~ll~~~--~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~ 451 (456)
T 2c1x_A 383 E-DVLEIGVRIEGGV---FTKSGLMSCFDQILSQE--KGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451 (456)
T ss_dssp H-HTSCCEEECGGGS---CCHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHT
T ss_pred H-HHhCeEEEecCCC---cCHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 9 66 9999998644 99999999999999864 4789999999999999765 445688899998774
No 5
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=2.1e-56 Score=451.91 Aligned_cols=421 Identities=21% Similarity=0.310 Sum_probs=305.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch-----hhhccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ-----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
++.||+++|++++||++|++.||+.|++| ||+|||++++.+. ..+++....+.+++|+.+|.. .++.. +
T Consensus 8 ~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~-~ 83 (463)
T 2acv_A 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQLIDLPEV---EPPPQ-E 83 (463)
T ss_dssp HCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHCSCTTEEEEECCCC---CCCCG-G
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhcccCCCCceEEECCCC---CCCcc-c
Confidence 45799999999999999999999999999 9999999998752 222221111234999998732 12221 1
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHh---CCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhh-ccccC
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKA---AKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATAL-VPARN 160 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~-~p~~~ 160 (471)
... ..... +...+......+++++++ .+||+||+| +..|+..+|+++|||++.+++++......+. .+...
T Consensus 84 ~~~--~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 159 (463)
T 2acv_A 84 LLK--SPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQ 159 (463)
T ss_dssp GGG--SHHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSC
T ss_pred ccC--CccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhc
Confidence 111 11111 334455667778888877 689999999 7889999999999999999998887655433 33211
Q ss_pred CCCCCCCCcccc--CCCCCCC-CCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHH
Q 012080 161 VPKDRPVTEAEL--AMPPAGY-PSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYI 237 (471)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 237 (471)
. ........+. ....+++ +. +....+... +..+ ......+.+........+++++|++++++++..+.+
T Consensus 160 ~-~~~~~~~~~~~~~~~~pg~~~~----~~~~~l~~~--~~~~-~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l 231 (463)
T 2acv_A 160 I-EEVFDDSDRDHQLLNIPGISNQ----VPSNVLPDA--CFNK-DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDAL 231 (463)
T ss_dssp T-TCCCCCSSGGGCEECCTTCSSC----EEGGGSCHH--HHCT-TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHH
T ss_pred c-cCCCCCccccCceeECCCCCCC----CChHHCchh--hcCC-chHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHH
Confidence 0 0000000000 0011222 21 111111111 1111 123333444445566788899999999999888887
Q ss_pred HHHc--CCCeEEeccCCCCCC-C--C---CChhhhhhccCCCCCCcEEEEEeCccc-cCCHHHHHHHHHHHHhcCCceEE
Q 012080 238 ARQY--NKPVFLTGPVLHEPA-K--T---PSEERWDKWLGGFERSSVVYCAFGSQI-ILEKKQFQELLLGLELTGLCFLI 308 (471)
Q Consensus 238 ~~~~--~~~v~~vGp~~~~~~-~--~---~~~~~l~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~~~ 308 (471)
.+.. ++++++|||+..... . . ..+.++.+|++.++++++|||||||+. ..+.+++.+++.+|+.++.+|+|
T Consensus 232 ~~~~~p~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~ 311 (463)
T 2acv_A 232 YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW 311 (463)
T ss_dssp HHHCTTSCCEEECCCCCCSSCCCBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HhccccCCcEEEeCCCcccccccccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 7766 678999999975432 1 1 235689999999887899999999999 78888899999999999999999
Q ss_pred EeCCCCCCCcccccCChhHHHhhC-CCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhh
Q 012080 309 ALKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILN 387 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~n 387 (471)
+++.+ .+.+|+++.++.. +.|+++.+|+||.++|+|+++++|||||||||++|++++|||||++|+++||+.|
T Consensus 312 ~~~~~------~~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~dQ~~N 385 (463)
T 2acv_A 312 SNSAE------KKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLN 385 (463)
T ss_dssp ECCCC------GGGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTTHHHH
T ss_pred EECCC------cccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhhhHHH
Confidence 99852 1237777766541 2466677799999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHhhcceEEe-ecccCC--cccHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhhhcC---C-CchhHHHHHHHH
Q 012080 388 TRLL-AEELKVAVEV-EREENG--WFSKESLCKAIKCVMD-KESEVGNVVRRNHAKWKGTLVS---P-GFVSGYIDKFVQ 458 (471)
Q Consensus 388 a~~v-~~~~G~G~~l-~~~~~~--~~t~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~---~-~~~~~~i~~~~~ 458 (471)
|+++ + ++|+|+.+ +..+.+ .+++++|+++|+++|+ ++ +||+||+++++.+++ + |.+.+.+++|++
T Consensus 386 a~~lv~-~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~-----~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~ 459 (463)
T 2acv_A 386 AFRLVK-EWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDS-----IVHKKVQEMKEMSRNAVVDGGSSLISVGKLID 459 (463)
T ss_dssp HHHHHH-TSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTC-----THHHHHHHHHHHHHHHTSTTSHHHHHHHHHHH
T ss_pred HHHHHH-HcCeEEEEecccCCCCccccHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9995 7 99999999 311113 5999999999999997 46 899999999998876 3 456688999998
Q ss_pred HHH
Q 012080 459 NMR 461 (471)
Q Consensus 459 ~~~ 461 (471)
.+.
T Consensus 460 ~~~ 462 (463)
T 2acv_A 460 DIT 462 (463)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=4.6e-46 Score=374.05 Aligned_cols=402 Identities=18% Similarity=0.230 Sum_probs=276.1
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
.+|+||+|++.++.||++|+++||++|+++||+|++++++.+...+++.| ++|+.++. +++..........
T Consensus 10 m~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~g-----~~~~~~~~----~~~~~~~~~~~~~ 80 (424)
T 2iya_A 10 VTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG-----ATPVVYDS----ILPKESNPEESWP 80 (424)
T ss_dssp -CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT-----CEEEECCC----CSCCTTCTTCCCC
T ss_pred cccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC-----CEEEecCc----cccccccchhhcc
Confidence 34689999999999999999999999999999999999999887777766 88888762 2332211101011
Q ss_pred ---hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCC
Q 012080 92 ---MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPV 167 (471)
Q Consensus 92 ---~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~ 167 (471)
......+........+.+.+++++.+||+||+| +..|+..+|+.+|||++.+++.+.........+..+.. .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~-~~-~ 158 (424)
T 2iya_A 81 EDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQD-PT-A 158 (424)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSC-CC-C
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccc-cc-c
Confidence 112223333345566778888888999999999 67889999999999999998765421111100100000 00 0
Q ss_pred CccccCCCCCCCCCCccccccc--cc----ccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc
Q 012080 168 TEAELAMPPAGYPSDTIVLRRH--EA----RELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY 241 (471)
Q Consensus 168 ~~~~~~~~~~~~p~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 241 (471)
.......++.+...... +... .. ..+..+...++.... .. ......+.+++++.++++++. ..+
T Consensus 159 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~~~~~~~~~l~~~~~~l~~~~-----~~~ 228 (424)
T 2iya_A 159 DRGEEAAAPAGTGDAEE-GAEAEDGLVRFFTRLSAFLEEHGVDTP-AT---EFLIAPNRCIVALPRTFQIKG-----DTV 228 (424)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHTTCCSC-HH---HHHHCCSSEEESSCTTTSTTG-----GGC
T ss_pred ccccccccccccccchh-hhccchhHHHHHHHHHHHHHHcCCCCC-HH---HhccCCCcEEEEcchhhCCCc-----cCC
Confidence 00000000000000000 0000 00 000000000000000 00 011145678999998888642 347
Q ss_pred CCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc
Q 012080 242 NKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEE 321 (471)
Q Consensus 242 ~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 321 (471)
++++++|||+.... .+..+|++..+++++||++|||......+.+..++++++..+.+++|.++.+...+.+.
T Consensus 229 ~~~~~~vGp~~~~~------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~~~- 301 (424)
T 2iya_A 229 GDNYTFVGPTYGDR------SHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADLG- 301 (424)
T ss_dssp CTTEEECCCCCCCC------GGGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEECCTTSCGGGGC-
T ss_pred CCCEEEeCCCCCCc------ccCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEEECCcCChHHhc-
Confidence 78899999975421 12347877665678999999999866678888999999888889999887543222111
Q ss_pred cCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEe
Q 012080 322 AFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEV 401 (471)
Q Consensus 322 ~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 401 (471)
.+ ++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|.+.||+.||++++ ++|+|+.+
T Consensus 302 ~~---------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~-~~g~g~~~ 369 (424)
T 2iya_A 302 EV---------PPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGLGRHI 369 (424)
T ss_dssp SC---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHH-HTTSEEEC
T ss_pred cC---------CCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHHHHHHH-HCCCEEEc
Confidence 12 347899999999999999998 9999999999999999999999999999999999999 99999999
Q ss_pred ecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 402 EREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 402 ~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
+.++ ++.++|.++|+++|+|+ +|+++++++++.+++.++..++++.+.+.+.
T Consensus 370 ~~~~---~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 370 PRDQ---VTAEKLREAVLAVASDP-----GVAERLAAVRQEIREAGGARAAADILEGILA 421 (424)
T ss_dssp CGGG---CCHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcCC---CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 8644 89999999999999998 9999999999999988887777777766554
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=1.4e-45 Score=367.48 Aligned_cols=364 Identities=14% Similarity=0.148 Sum_probs=238.5
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCC---CCCCCCCCC-
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVD---GLPAGAETA- 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~- 87 (471)
.+.|||||+++|+.||++|+++||++|++|||+|||++++.+....+ .+ +.+..+...... ..+......
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~-~g-----~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAE-AG-----LCAVDVSPGVNYAKLFVPDDTDVTD 93 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHT-TT-----CEEEESSTTCCSHHHHSCCC-----
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHh-cC-----CeeEecCCchhHhhhcccccccccc
Confidence 55679999999999999999999999999999999999998876543 24 666665421000 000000000
Q ss_pred -----CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCC
Q 012080 88 -----SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNV 161 (471)
Q Consensus 88 -----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~ 161 (471)
..........+..........+.+++++.+||+||+| +.+++..+|+.+|||++.+...+....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~---------- 163 (400)
T 4amg_A 94 PMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSE---------- 163 (400)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCC----------
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeecccccccc----------
Confidence 0000112233334445566778888899999999999 799999999999999997654432110
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH--
Q 012080 162 PKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR-- 239 (471)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-- 239 (471)
+. +.. .+. ......+.+................. +......+
T Consensus 164 ------------------~~----~~~----~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 207 (400)
T 4amg_A 164 ------------------PG----LGA----LIR------RAMSKDYERHGVTGEPTGSVRLTTTP----PSVEALLPED 207 (400)
T ss_dssp ------------------HH----HHH----HHH------HHTHHHHHHTTCCCCCSCEEEEECCC----HHHHHTSCGG
T ss_pred ------------------cc----hhh----HHH------HHHHHHHHHhCCCcccccchhhcccC----chhhccCccc
Confidence 00 000 000 00001111111001111111111111 11111000
Q ss_pred HcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCC--HHHHHHHHHHHHhcCCceEEEeCCCCCCC
Q 012080 240 QYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILE--KKQFQELLLGLELTGLCFLIALKPPTGAS 317 (471)
Q Consensus 240 ~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 317 (471)
...+..+..++.. ...+..+.+|++..+++++|||||||+.... .+.+..++.+++..+.+++|..+.....
T Consensus 208 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~- 281 (400)
T 4amg_A 208 RRSPGAWPMRYVP-----YNGGAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDLA- 281 (400)
T ss_dssp GCCTTCEECCCCC-----CCCCEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCCC-
T ss_pred ccCCcccCccccc-----ccccccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCcccc-
Confidence 0111222222221 1223455678888888899999999987643 3567889999999999999998753221
Q ss_pred cccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 012080 318 TVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV 397 (471)
Q Consensus 318 ~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 397 (471)
.. ..+| +|+++.+|+||.++|+|+++ ||||||+||++||+++|||+|++|+++||+.||++++ ++|+
T Consensus 282 ~~-~~~~---------~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~-~~G~ 348 (400)
T 4amg_A 282 LL-GELP---------ANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT-GLGI 348 (400)
T ss_dssp CC-CCCC---------TTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---CHHHHHHHH-HHTS
T ss_pred cc-ccCC---------CCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCcccHHHHHHHHH-HCCC
Confidence 11 1234 47799999999999999988 9999999999999999999999999999999999999 9999
Q ss_pred eEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 012080 398 AVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQ 458 (471)
Q Consensus 398 G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~ 458 (471)
|+.++..+ ++. ++|+++|+|+ +||+||+++++++++.++..++++.+.+
T Consensus 349 g~~l~~~~---~~~----~al~~lL~d~-----~~r~~a~~l~~~~~~~~~~~~~a~~le~ 397 (400)
T 4amg_A 349 GFDAEAGS---LGA----EQCRRLLDDA-----GLREAALRVRQEMSEMPPPAETAAXLVA 397 (400)
T ss_dssp EEECCTTT---CSH----HHHHHHHHCH-----HHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred EEEcCCCC---chH----HHHHHHHcCH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99998644 665 4677899998 9999999999999999877766665554
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.7e-42 Score=346.94 Aligned_cols=377 Identities=12% Similarity=0.077 Sum_probs=254.3
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+||+|++.++.||++|+++||++|+++||+|||++++.+...+...| ++|+.++....+.+ ........
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g-----~~~~~i~~~~~~~~----~~~~~~~~-- 69 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVG-----VPHVPVGPSARAPI----QRAKPLTA-- 69 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CCEEECCC-----------CCSCCCH--
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHcC-----CeeeeCCCCHHHHh----hcccccch--
Confidence 48999999999999999999999999999999999999877777666 88888874311111 11111111
Q ss_pred HHHHHHHHHHh-HHHHHHHHH-hCCCcEEEEc-C-ccc--hHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 95 INLLVIAMDRC-RGQVEAVIK-AAKPRLLFYD-I-AYW--MATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 95 ~~~~~~~~~~~-~~~l~~~l~-~~~~Dlvi~D-~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
..+...+... ...+.++++ ..+||+||+| . ..+ +..+|+.+|||++.+++++..... ...|.
T Consensus 70 -~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~-~~~p~---------- 137 (415)
T 1iir_A 70 -EDVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPS-PYYPP---------- 137 (415)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCC-SSSCC----------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCC-cccCC----------
Confidence 1111112212 222334443 5689999999 4 777 889999999999999877643200 00010
Q ss_pred ccccCCCCCCCCCCcccc-ccccccccccc-ccCC--CCchhHHHHHHhh------------hccCCEEEEcCccccch-
Q 012080 169 EAELAMPPAGYPSDTIVL-RRHEARELTFI-SFPF--GEGMSFYERITTS------------LKESDAISIRTCHEIEG- 231 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~------------~~~~~~~l~~~~~~l~~- 231 (471)
...+ .. + .+...+.+... .... ......+.+.... .... .+++++.+++++
T Consensus 138 --------~~~~--~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~ 205 (415)
T 1iir_A 138 --------PPLG--EP-STQDTIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVLAPL 205 (415)
T ss_dssp --------CC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTTSCC
T ss_pred --------ccCC--cc-ccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhhcCC
Confidence 1100 00 0 00000000000 0000 0000000011000 1112 578888888775
Q ss_pred hHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeC
Q 012080 232 DLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALK 311 (471)
Q Consensus 232 ~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (471)
+. ..+ ++++|||+..... ...+.++.+|++.+ +++|||+|||+. ...+.+..++++++..+.+++|+++
T Consensus 206 ~~-----~~~--~~~~vG~~~~~~~-~~~~~~~~~~l~~~--~~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g 274 (415)
T 1iir_A 206 QP-----TDL--DAVQTGAWILPDE-RPLSPELAAFLDAG--PPPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRG 274 (415)
T ss_dssp CC-----CSS--CCEECCCCCCCCC-CCCCHHHHHHHHTS--SCCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTT
T ss_pred Cc-----ccC--CeEeeCCCccCcc-cCCCHHHHHHHhhC--CCeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 21 112 7899999876432 35678899999765 359999999987 5677788899999989999999887
Q ss_pred CCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHH
Q 012080 312 PPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLL 391 (471)
Q Consensus 312 ~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v 391 (471)
.+... . ..+| +|+++.+|+||.++|+.+++ ||||||+||++|++++|||+|++|.+.||+.||+++
T Consensus 275 ~~~~~--~-~~~~---------~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l 340 (415)
T 1iir_A 275 WADLV--L-PDDG---------ADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRV 340 (415)
T ss_dssp CTTCC--C-SSCG---------GGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH
T ss_pred CCccc--c-cCCC---------CCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCCCCccHHHHHHH
Confidence 54211 1 1122 37899999999999977777 999999999999999999999999999999999999
Q ss_pred HHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 392 AEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 392 ~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
+ +.|+|+.++.++ ++.++|.++|+++ .|+ +|+++++++++.++..++.++.++.+.+.+.
T Consensus 341 ~-~~g~g~~~~~~~---~~~~~l~~~i~~l-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 400 (415)
T 1iir_A 341 A-ELGVGVAHDGPI---PTFDSLSAALATA-LTP-----ETHARATAVAGTIRTDGAAVAARLLLDAVSR 400 (415)
T ss_dssp H-HHTSEEECSSSS---CCHHHHHHHHHHH-TSH-----HHHHHHHHHHHHSCSCHHHHHHHHHHHHHHT
T ss_pred H-HCCCcccCCcCC---CCHHHHHHHHHHH-cCH-----HHHHHHHHHHHHHhhcChHHHHHHHHHHHHh
Confidence 9 999999998644 8999999999999 887 9999999999999877666666666555543
No 9
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=2.5e-41 Score=338.55 Aligned_cols=392 Identities=14% Similarity=0.166 Sum_probs=270.3
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCC---C
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAE---T 86 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~ 86 (471)
...+|+||+|++.++.||++|+++||++|+++||+|++++++.+.+.++..| +++..++.+ ++.... .
T Consensus 16 ~~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~G-----~~~~~~~~~----~~~~~~~~~~ 86 (415)
T 3rsc_A 16 EGRHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAG-----ATVVPYQSE----IIDADAAEVF 86 (415)
T ss_dssp ---CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CEEEECCCS----TTTCCHHHHH
T ss_pred CcccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhcC-----CEEEecccc----ccccccchhh
Confidence 4577899999999999999999999999999999999999999888887777 888888732 221100 0
Q ss_pred CCCCChhhHHH-HHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCC
Q 012080 87 ASDVPMSSINL-LVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPK 163 (471)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~ 163 (471)
........... +..........+.+++++.+||+||+| . .+++..+|+.+|||++.+.+.......+...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~----- 161 (415)
T 3rsc_A 87 GSDDLGVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQD----- 161 (415)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHH-----
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCccccccc-----
Confidence 00111111122 233344556778889999999999999 5 888999999999999988754321100000000
Q ss_pred CCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCC
Q 012080 164 DRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK 243 (471)
Q Consensus 164 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 243 (471)
...... ...|. ........+..+...++.... ..+.. ....+..+.....++++ ....++.
T Consensus 162 -----~~~~~~--~~~p~----~~~~~~~~~~~~~~~~g~~~~-~~~~~--~~~~~~~l~~~~~~~~~-----~~~~~~~ 222 (415)
T 3rsc_A 162 -----MVTLAG--TIDPL----DLPVFRDTLRDLLAEHGLSRS-VVDCW--NHVEQLNLVFVPKAFQI-----AGDTFDD 222 (415)
T ss_dssp -----HHHHHT--CCCGG----GCHHHHHHHHHHHHHTTCCCC-HHHHH--TCCCSEEEESSCTTTST-----TGGGCCT
T ss_pred -----cccccc--cCChh----hHHHHHHHHHHHHHHcCCCCC-hhhhh--cCCCCeEEEEcCcccCC-----CcccCCC
Confidence 000000 00000 000000000000000110000 00000 01125556555544442 3445677
Q ss_pred CeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccC
Q 012080 244 PVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAF 323 (471)
Q Consensus 244 ~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 323 (471)
++.++||+.... .+..+|....+++++||+++||......+.+..++++++..+.+++|..+.+.+.+.+.. +
T Consensus 223 ~~~~vGp~~~~~------~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~~~~l~~-~ 295 (415)
T 3rsc_A 223 RFVFVGPCFDDR------RFLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAALGD-L 295 (415)
T ss_dssp TEEECCCCCCCC------GGGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTSCGGGGCC-C
T ss_pred ceEEeCCCCCCc------ccCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCCChHHhcC-C
Confidence 899999876431 234456655556789999999997767778888999998888889998875433222211 2
Q ss_pred ChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 324 PDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 324 p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
++|+++.+|+|+.++|+++++ ||||||+||++|++++|+|+|++|...||+.||.+++ +.|+|+.+..
T Consensus 296 ---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~-~~g~g~~~~~ 363 (415)
T 3rsc_A 296 ---------PPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVD-QLGLGAVLPG 363 (415)
T ss_dssp ---------CTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHH-HHTCEEECCG
T ss_pred ---------CCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHH-HcCCEEEccc
Confidence 347899999999999999998 9999999999999999999999999999999999999 9999999987
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
++ ++.++|.++|+++|+|+ +++++++++++.+.+.++..++++.+.+.+.
T Consensus 364 ~~---~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 364 EK---ADGDTLLAAVGAVAADP-----ALLARVEAMRGHVRRAGGAARAADAVEAYLA 413 (415)
T ss_dssp GG---CCHHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 55 89999999999999998 9999999999999988888888877776654
No 10
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.7e-41 Score=338.45 Aligned_cols=375 Identities=13% Similarity=0.034 Sum_probs=255.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+||+|++.++.||++|+++||++|+++||+|++++++.+...++..| ++|+.++......+.. .......
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~g-----~~~~~~~~~~~~~~~~---~~~~~~~-- 70 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVG-----VPHVPVGLPQHMMLQE---GMPPPPP-- 70 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHT-----CCEEECSCCGGGCCCT---TSCCCCH--
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC-----CeeeecCCCHHHHHhh---ccccchh--
Confidence 48999999999999999999999999999999999998877777766 8888887331111111 0011111
Q ss_pred HHHHHHHHHHhHHHHHHHHH--hCCCcEEEEc-C-ccc--hHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 95 INLLVIAMDRCRGQVEAVIK--AAKPRLLFYD-I-AYW--MATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~--~~~~Dlvi~D-~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
..+...+......+.+.++ ..+||+||+| + .++ +..+|+.+|||++.+.+++...... ..|.
T Consensus 71 -~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-~~p~---------- 138 (416)
T 1rrv_A 71 -EEEQRLAAMTVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASP-HLPP---------- 138 (416)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCCS-SSCC----------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCCc-ccCC----------
Confidence 0111112112222223333 5689999999 5 677 8889999999999888765322000 0000
Q ss_pred ccccCCCCCCC-CCCcccccccccccccccccCCCCchhHHHHHH------------hhhccCCEEEEcCccccchhHHH
Q 012080 169 EAELAMPPAGY-PSDTIVLRRHEARELTFISFPFGEGMSFYERIT------------TSLKESDAISIRTCHEIEGDLCE 235 (471)
Q Consensus 169 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~l~~~~~~ 235 (471)
. .. ..+ +... ............... .......+.. ...... .+++++.++++++..
T Consensus 139 ~--~~---~~~~~~r~--~n~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~- 207 (416)
T 1rrv_A 139 A--YD---EPTTPGVT--DIRVLWEERAARFAD--RYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPVLAPLQP- 207 (416)
T ss_dssp C--BC---SCCCTTCC--CHHHHHHHHHHHHHH--HHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTTTSCCCS-
T ss_pred C--CC---CCCCchHH--HHHHHHHHHHHHHHH--HhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCccccCCCC-
Confidence 0 00 000 0000 000000000000000 0000000110 011223 678888888875321
Q ss_pred HHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCC
Q 012080 236 YIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPT 314 (471)
Q Consensus 236 ~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~ 314 (471)
.+ +++++||+..... ...+.++.+|++.+ +++|||+|||+.. ...+.+..++++++..+.+++|+.+.+.
T Consensus 208 ----~~--~~~~vG~~~~~~~-~~~~~~~~~~l~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~ 278 (416)
T 1rrv_A 208 ----DV--DAVQTGAWLLSDE-RPLPPELEAFLAAG--SPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTE 278 (416)
T ss_dssp ----SC--CCEECCCCCCCCC-CCCCHHHHHHHHSS--SCCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTT
T ss_pred ----CC--CeeeECCCccCcc-CCCCHHHHHHHhcC--CCeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 12 7899999876532 34578899999765 3599999999864 3456678899999989999999987542
Q ss_pred CCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHh
Q 012080 315 GASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE 394 (471)
Q Consensus 315 ~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~ 394 (471)
.. . ..+ ++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|.+.||+.||++++ +
T Consensus 279 ~~--~-~~~---------~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~-~ 343 (416)
T 1rrv_A 279 LV--L-PDD---------RDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVA-A 343 (416)
T ss_dssp CC--C-SCC---------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHH-H
T ss_pred cc--c-cCC---------CCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHH-H
Confidence 11 1 112 347889999999999988877 9999999999999999999999999999999999999 9
Q ss_pred hcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHH
Q 012080 395 LKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKF 456 (471)
Q Consensus 395 ~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~ 456 (471)
.|+|+.++.++ ++.++|.++|+++ .|+ +|+++++++++.+.+.++. ++++.+
T Consensus 344 ~g~g~~~~~~~---~~~~~l~~~i~~l-~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~i 395 (416)
T 1rrv_A 344 LGIGVAHDGPT---PTFESLSAALTTV-LAP-----ETRARAEAVAGMVLTDGAA-AAADLV 395 (416)
T ss_dssp HTSEEECSSSC---CCHHHHHHHHHHH-TSH-----HHHHHHHHHTTTCCCCHHH-HHHHHH
T ss_pred CCCccCCCCCC---CCHHHHHHHHHHh-hCH-----HHHHHHHHHHHHHhhcCcH-HHHHHH
Confidence 99999998644 8999999999999 888 9999999999999987777 666666
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=1.6e-40 Score=331.25 Aligned_cols=372 Identities=15% Similarity=0.137 Sum_probs=258.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+||+|++.++.||++|+++||++|+++||+|++++++.+...++..| ++|..++.+... + .. .. .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~g-----~~~~~l~~~~~~-~-~~-~~-~~~~~~~ 71 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVG-----VPMVPVGRAVRA-G-AR-EP-GELPPGA 71 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHTT-----CCEEECSSCSSG-G-GS-CT-TCCCTTC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHcC-----CceeecCCCHHH-H-hc-cc-cCCHHHH
Confidence 58999999999999999999999999999999999999988888777 888888733110 0 00 00 0001112
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccch---HHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCcc
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWM---ATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEA 170 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 170 (471)
...+..........+.++++ +||+||+| ....+ ..+|+.+|||++.+..++.....
T Consensus 72 ~~~~~~~~~~~~~~l~~~~~--~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~------------------ 131 (404)
T 3h4t_A 72 AEVVTEVVAEWFDKVPAAIE--GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPS------------------ 131 (404)
T ss_dssp GGGHHHHHHHHHHHHHHHHT--TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGG------------------
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCC------------------
Confidence 22233334444455555554 69999999 64444 68899999999988876642100
Q ss_pred ccCCCCCCCCCCccccccccccc----ccccccC--CCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCC
Q 012080 171 ELAMPPAGYPSDTIVLRRHEARE----LTFISFP--FGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKP 244 (471)
Q Consensus 171 ~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 244 (471)
..+...........++. +..+... ........... ..+..+.+..+.+.+.. .++++
T Consensus 132 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-----~~~~~l~~~~~~l~p~~------~~~~~ 194 (404)
T 3h4t_A 132 ------EQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYG-----YTDQPWLAADPVLSPLR------PTDLG 194 (404)
T ss_dssp ------GSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHH-----HCSSCEECSCTTTSCCC------TTCCS
T ss_pred ------hhHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCcchhhcc-----ccCCeEEeeCcceeCCC------CCCCC
Confidence 00000000000000000 0000000 00000011100 12223445555444321 25668
Q ss_pred eEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCC
Q 012080 245 VFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFP 324 (471)
Q Consensus 245 v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p 324 (471)
+.++|++..+. ....++++.+|++.. +++|||+|||+.. ..+.+..++++++..+.+++|+.++.... . .
T Consensus 195 ~~~~G~~~~~~-~~~~~~~l~~~l~~~--~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~~~vv~~~g~~~~~-~----~- 264 (404)
T 3h4t_A 195 TVQTGAWILPD-QRPLSAELEGFLRAG--SPPVYVGFGSGPA-PAEAARVAIEAVRAQGRRVVLSSGWAGLG-R----I- 264 (404)
T ss_dssp CCBCCCCCCCC-CCCCCHHHHHHHHTS--SCCEEECCTTSCC-CTTHHHHHHHHHHHTTCCEEEECTTTTCC-C----S-
T ss_pred eEEeCccccCC-CCCCCHHHHHHHhcC--CCeEEEECCCCCC-cHHHHHHHHHHHHhCCCEEEEEeCCcccc-c----c-
Confidence 89999876543 346778899999754 4699999999987 66778889999999999999998753211 1 1
Q ss_pred hhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecc
Q 012080 325 DGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVERE 404 (471)
Q Consensus 325 ~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 404 (471)
+ ..+|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|+++||+.||.+++ +.|+|+.+...
T Consensus 265 ~------~~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~-~~G~g~~l~~~ 335 (404)
T 3h4t_A 265 D------EGDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVA-DLGVGVAHDGP 335 (404)
T ss_dssp S------CCTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH-HHTSEEECSSS
T ss_pred c------CCCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHH-HCCCEeccCcC
Confidence 1 1458899999999999998888 9999999999999999999999999999999999999 99999999864
Q ss_pred cCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 405 ENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 405 ~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
+ ++.++|.++|+++|+ + +|+++++++++.+.+ .+..++++.+.+.+.
T Consensus 336 ~---~~~~~l~~ai~~ll~-~-----~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 336 T---PTVESLSAALATALT-P-----GIRARAAAVAGTIRT-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp S---CCHHHHHHHHHHHTS-H-----HHHHHHHHHHTTCCC-CHHHHHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHHHhC-H-----HHHHHHHHHHHHHhh-hHHHHHHHHHHHHHh
Confidence 4 899999999999998 8 999999999999999 777777777766654
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=9.5e-40 Score=325.49 Aligned_cols=393 Identities=15% Similarity=0.169 Sum_probs=267.1
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.|+||+|++.++.||++|+++||++|+++||+|++++++.+.+.++..| +++..++.+.... ............
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G-----~~~~~~~~~~~~~-~~~~~~~~~~~~ 76 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAG-----AEVVLYKSEFDTF-HVPEVVKQEDAE 76 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTT-----CEEEECCCGGGTS-SSSSSSCCTTHH
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcC-----CEEEecccccccc-cccccccccchH
Confidence 3569999999999999999999999999999999999988888787777 8888876321100 000001111111
Q ss_pred hhHHH-HHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 93 SSINL-LVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 93 ~~~~~-~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
..... +..........+.+.+++.+||+||+| . .+++..+|+.+|||++.+.+.......+...+. .
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~----------~ 146 (402)
T 3ia7_A 77 TQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKE----------L 146 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHH----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcccccccc----------c
Confidence 11222 223334456778888999999999999 5 888999999999999988754331100000000 0
Q ss_pred cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEec
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTG 249 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 249 (471)
..... ...|.. +. .....+..+...++.... ..... ....+..+.....++++ ....++.++.++|
T Consensus 147 ~~~~~--~~~~~~---~~-~~~~~~~~~~~~~g~~~~-~~~~~--~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~vG 212 (402)
T 3ia7_A 147 WKSNG--QRHPAD---VE-AVHSVLVDLLGKYGVDTP-VKEYW--DEIEGLTIVFLPKSFQP-----FAETFDERFAFVG 212 (402)
T ss_dssp HHHHT--CCCGGG---SH-HHHHHHHHHHHTTTCCSC-HHHHH--TCCCSCEEESSCGGGST-----TGGGCCTTEEECC
T ss_pred ccccc--ccChhh---HH-HHHHHHHHHHHHcCCCCC-hhhhh--cCCCCeEEEEcChHhCC-----ccccCCCCeEEeC
Confidence 00000 000000 00 000000000111111000 00110 01114455555444442 2344677899999
Q ss_pred cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHH
Q 012080 250 PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAE 329 (471)
Q Consensus 250 p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 329 (471)
|+.... .+..+|+...+++++||+++||......+.+..++++++..+.+++|..+.+...+.+.. +
T Consensus 213 p~~~~~------~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~------ 279 (402)
T 3ia7_A 213 PTLTGR------DGQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVLGP-L------ 279 (402)
T ss_dssp CCCCC----------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSCGGGGCS-C------
T ss_pred CCCCCc------ccCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCChhhhCC-C------
Confidence 876432 123456654556789999999998777778889999998888888888875433222211 2
Q ss_pred hhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc-cccchhhHHHHHHhhcceEEeecccCCc
Q 012080 330 RTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH-LGDQILNTRLLAEELKVAVEVEREENGW 408 (471)
Q Consensus 330 ~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 408 (471)
.+|+++.+|+|+.++|+++++ ||||||+||++|++++|+|+|++|. ..||..||.+++ +.|+|..+..++
T Consensus 280 ---~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~-~~g~g~~~~~~~--- 350 (402)
T 3ia7_A 280 ---PPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVI-ELGLGSVLRPDQ--- 350 (402)
T ss_dssp ---CTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHH-HTTSEEECCGGG---
T ss_pred ---CCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHH-HcCCEEEccCCC---
Confidence 357899999999999999998 9999999999999999999999999 999999999999 999999998754
Q ss_pred ccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 409 FSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
++.+.|.++|+++|+|+ +++++++++++.+.+.++..++++.+.+.+.+
T Consensus 351 ~~~~~l~~~~~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 351 LEPASIREAVERLAADS-----AVRERVRRMQRDILSSGGPARAADEVEAYLGR 399 (402)
T ss_dssp CSHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHhhCChHHHHHHHHHHHHhh
Confidence 89999999999999998 99999999999998888888877777766643
No 13
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=9.1e-39 Score=321.52 Aligned_cols=389 Identities=16% Similarity=0.199 Sum_probs=258.8
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC---CCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET---ASD 89 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~ 89 (471)
.|+||+|++.++.||++|++.||++|+++||+|++++++.....+...| ++++.++. ..+..... ...
T Consensus 6 ~m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~g-----~~~~~~~~----~~~~~~~~~~~~~~ 76 (430)
T 2iyf_A 6 TPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATG-----PRPVLYHS----TLPGPDADPEAWGS 76 (430)
T ss_dssp --CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTTS-----CEEEECCC----CSCCTTSCGGGGCS
T ss_pred ccceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhCC-----CEEEEcCC----cCccccccccccch
Confidence 3579999999999999999999999999999999999998876666655 88887762 12211110 000
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCC
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVT 168 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~ 168 (471)
........+...+......+.+++++.+||+||+| +.+++..+|+.+|||++.+++.......+...+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--------- 147 (430)
T 2iyf_A 77 TLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAE--------- 147 (430)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHH---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEeccccccccccccccc---------
Confidence 00111222222344556778889999999999999 67788999999999999888654211000000000
Q ss_pred ccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCC-eEE
Q 012080 169 EAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKP-VFL 247 (471)
Q Consensus 169 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-v~~ 247 (471)
.........+. ... ....+..+...++.... ... .....+.+++++..++++.. ..++++ +++
T Consensus 148 --~~~~~~~~~~~----~~~-~~~~~~~~~~~~g~~~~-~~~---~~~~~~~~l~~~~~~~~~~~-----~~~~~~~v~~ 211 (430)
T 2iyf_A 148 --PMWREPRQTER----GRA-YYARFEAWLKENGITEH-PDT---FASHPPRSLVLIPKALQPHA-----DRVDEDVYTF 211 (430)
T ss_dssp --HHHHHHHHSHH----HHH-HHHHHHHHHHHTTCCSC-HHH---HHHCCSSEEECSCGGGSTTG-----GGSCTTTEEE
T ss_pred --chhhhhccchH----HHH-HHHHHHHHHHHhCCCCC-HHH---HhcCCCcEEEeCcHHhCCCc-----ccCCCccEEE
Confidence 00000000000 000 00000000000000000 000 11135778888888777532 236667 999
Q ss_pred eccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChh
Q 012080 248 TGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDG 326 (471)
Q Consensus 248 vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 326 (471)
+||...... +..+|.+..+++++||+++||+.....+.+..++++++.. +.+++|.++.+...+.+. .+
T Consensus 212 vG~~~~~~~------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~-~~--- 281 (430)
T 2iyf_A 212 VGACQGDRA------EEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELG-EL--- 281 (430)
T ss_dssp CCCCC-----------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGC-SC---
T ss_pred eCCcCCCCC------CCCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhc-cC---
Confidence 998653211 1235665445577999999999855567788899999775 778888887543222111 12
Q ss_pred HHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 327 FAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 327 ~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|..+||..||.+++ +.|+|+.+..++
T Consensus 282 ------~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~-~~g~g~~~~~~~- 351 (430)
T 2iyf_A 282 ------PDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-GLGVARKLATEE- 351 (430)
T ss_dssp ------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHH-HTTSEEECCCC--
T ss_pred ------CCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHH-HcCCEEEcCCCC-
Confidence 357899999999999999998 9999999999999999999999999999999999999 999999998644
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
++.++|.++|+++|+|+ ++++++.++++.+.+.++..+.++.+.+.+.+
T Consensus 352 --~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 352 --ATADLLRETALALVDDP-----EVARRLRRIQAEMAQEGGTRRAADLIEAELPA 400 (430)
T ss_dssp --CCHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSCC
T ss_pred --CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhc
Confidence 89999999999999988 89999999998887776666666666555433
No 14
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=2e-38 Score=319.98 Aligned_cols=379 Identities=12% Similarity=0.099 Sum_probs=247.9
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCC-CCCCCCCC-CC--
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHV-DGLPAGAE-TA-- 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~-~~-- 87 (471)
..++||+|++.++.||++|+++||++|+++||+|+|++++.+...++..| ++|+.++.... .++..... ..
T Consensus 18 ~~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~G-----~~~~~i~~~~~~~~~~~~~~~~~~~ 92 (441)
T 2yjn_A 18 GSHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAAG-----LTAVPVGTDVDLVDFMTHAGHDIID 92 (441)
T ss_dssp -CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTTT-----CCEEECSCCCCHHHHHHHTTHHHHH
T ss_pred CCccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhCC-----CceeecCCccchHHHhhhhhccccc
Confidence 56789999999999999999999999999999999999999887777767 88888873210 00000000 00
Q ss_pred ----CC-----C---ChhhH----HHHHHHHH-----H-hHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEe
Q 012080 88 ----SD-----V---PMSSI----NLLVIAMD-----R-CRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 88 ----~~-----~---~~~~~----~~~~~~~~-----~-~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~ 144 (471)
.+ . ..... ..+...+. . ....+.+++++.+||+||+| +..++..+|+.+|||++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~v~~~ 172 (441)
T 2yjn_A 93 YVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPHARLL 172 (441)
T ss_dssp HHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCEEEEC
T ss_pred ccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCEEEEe
Confidence 00 0 00011 11111111 1 55667777888899999999 67889999999999999886
Q ss_pred cchhHHHHH-hhccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhc-------
Q 012080 145 VVCAASIAT-ALVPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLK------- 216 (471)
Q Consensus 145 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (471)
..+...... ...+.. ....|... +. ......+.+....+.
T Consensus 173 ~~~~~~~~~~~~~~~~----------------~~~~~~~~--~~--------------~~~~~~l~~~~~~~g~~~~~~~ 220 (441)
T 2yjn_A 173 WGPDITTRARQNFLGL----------------LPDQPEEH--RE--------------DPLAEWLTWTLEKYGGPAFDEE 220 (441)
T ss_dssp SSCCHHHHHHHHHHHH----------------GGGSCTTT--CC--------------CHHHHHHHHHHHHTTCCCCCGG
T ss_pred cCCCcchhhhhhhhhh----------------cccccccc--cc--------------chHHHHHHHHHHHcCCCCCCcc
Confidence 544221110 000000 00000000 00 000111111111110
Q ss_pred --cCCEEEEcCccccchhHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccC---CHHH
Q 012080 217 --ESDAISIRTCHEIEGDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIIL---EKKQ 291 (471)
Q Consensus 217 --~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~---~~~~ 291 (471)
..+..+..+...++++ ..++. ..+++... ..+.++.+|++..+++++||+++||+... ..+.
T Consensus 221 ~~~~~~~l~~~~~~~~~~------~~~~~--~~~~~~~~-----~~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~ 287 (441)
T 2yjn_A 221 VVVGQWTIDPAPAAIRLD------TGLKT--VGMRYVDY-----NGPSVVPEWLHDEPERRRVCLTLGISSRENSIGQVS 287 (441)
T ss_dssp GTSCSSEEECSCGGGSCC------CCCCE--EECCCCCC-----CSSCCCCGGGSSCCSSCEEEEEC----------CCS
T ss_pred ccCCCeEEEecCccccCC------CCCCC--CceeeeCC-----CCCcccchHhhcCCCCCEEEEECCCCcccccChHHH
Confidence 1233444433333321 01210 12222211 12345678887666678999999999753 2345
Q ss_pred HHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhh
Q 012080 292 FQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMS 371 (471)
Q Consensus 292 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~ 371 (471)
+..++++++..+.+++|+.+.. +.+.+.. + ++|+++.+|+||.++|+.+++ ||||||+||++|++++
T Consensus 288 ~~~~~~al~~~~~~~v~~~g~~-~~~~l~~-~---------~~~v~~~~~~~~~~ll~~ad~--~V~~~G~~t~~Ea~~~ 354 (441)
T 2yjn_A 288 IEELLGAVGDVDAEIIATFDAQ-QLEGVAN-I---------PDNVRTVGFVPMHALLPTCAA--TVHHGGPGSWHTAAIH 354 (441)
T ss_dssp TTTTHHHHHTSSSEEEECCCTT-TTSSCSS-C---------CSSEEECCSCCHHHHGGGCSE--EEECCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEEEECCc-chhhhcc-C---------CCCEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHh
Confidence 6778888888889999987742 2111111 2 348899999999999988888 9999999999999999
Q ss_pred CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhH
Q 012080 372 DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSG 451 (471)
Q Consensus 372 GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~ 451 (471)
|||+|++|...||+.||.+++ +.|+|+.++.++ ++.++|.++|+++|+|+ +|+++++++++.+.+.++..+
T Consensus 355 G~P~i~~p~~~dQ~~na~~l~-~~g~g~~~~~~~---~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~ 425 (441)
T 2yjn_A 355 GVPQVILPDGWDTGVRAQRTQ-EFGAGIALPVPE---LTPDQLRESVKRVLDDP-----AHRAGAARMRDDMLAEPSPAE 425 (441)
T ss_dssp TCCEEECCCSHHHHHHHHHHH-HHTSEEECCTTT---CCHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHTSCCHHH
T ss_pred CCCEEEeCCcccHHHHHHHHH-HcCCEEEccccc---CCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHcCCCHHH
Confidence 999999999999999999999 999999998654 89999999999999998 999999999999999888777
Q ss_pred HHHHHHHHHHh
Q 012080 452 YIDKFVQNMRG 462 (471)
Q Consensus 452 ~i~~~~~~~~~ 462 (471)
.++.+.+.+.+
T Consensus 426 ~~~~i~~~~~~ 436 (441)
T 2yjn_A 426 VVGICEELAAG 436 (441)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 77777666543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=5.9e-39 Score=318.03 Aligned_cols=362 Identities=11% Similarity=0.092 Sum_probs=251.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCC-C---CCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLP-A---GAETASDV 90 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~ 90 (471)
+||++++.++.||++|+++||++|+++||+|++++++.....++..| ++++.++.....+.. . ......+.
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGVG-----LPAVATTDLPIRHFITTDREGRPEAIPS 75 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CCEEESCSSCHHHHHHBCTTSCBCCCCC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhCC-----CEEEEeCCcchHHHHhhhcccCccccCc
Confidence 48999999999999999999999999999999999988766666656 778877622100000 0 00000000
Q ss_pred ChhhHHH-----HHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCC
Q 012080 91 PMSSINL-----LVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKD 164 (471)
Q Consensus 91 ~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~ 164 (471)
....... +..........+.+++++.+||+||+| +..++..+|+.+|||++.+...+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~~-------------- 141 (384)
T 2p6p_A 76 DPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVDA-------------- 141 (384)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCC--------------
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCCccc--------------
Confidence 1011111 222233456677788888899999999 67888899999999999775321100
Q ss_pred CCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHH-hhhccCCEEEEcCccccchhHHHHHHHHcC-
Q 012080 165 RPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERIT-TSLKESDAISIRTCHEIEGDLCEYIARQYN- 242 (471)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~- 242 (471)
.+ +.. .+. .....+..+.. ......+.+++++...++++. .++
T Consensus 142 ------------~~-------~~~----~~~------~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~------~~~~ 186 (384)
T 2p6p_A 142 ------------DG-------IHP----GAD------AELRPELSELGLERLPAPDLFIDICPPSLRPAN------AAPA 186 (384)
T ss_dssp ------------TT-------THH----HHH------HHTHHHHHHTTCSSCCCCSEEEECSCGGGSCTT------SCCC
T ss_pred ------------ch-------hhH----HHH------HHHHHHHHHcCCCCCCCCCeEEEECCHHHCCCC------CCCC
Confidence 00 000 000 00001111100 000114677888877766421 022
Q ss_pred CCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccC-----CHHHHHHHHHHHHhcCCceEEEeCCCCCCC
Q 012080 243 KPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIIL-----EKKQFQELLLGLELTGLCFLIALKPPTGAS 317 (471)
Q Consensus 243 ~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~-----~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 317 (471)
.++.+++. . .+.++.+|++..+++++||+++||.... +.+.+..++++++..+.+++|+.+..
T Consensus 187 ~~~~~~~~---~-----~~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~---- 254 (384)
T 2p6p_A 187 RMMRHVAT---S-----RQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDT---- 254 (384)
T ss_dssp EECCCCCC---C-----CCCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTTCEEEEECCHH----
T ss_pred CceEecCC---C-----CCCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCCcEEEEEeCCC----
Confidence 23334421 1 1234567876644567999999999764 34678889999988899999987621
Q ss_pred cccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc
Q 012080 318 TVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV 397 (471)
Q Consensus 318 ~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 397 (471)
..+.+. . .++|+.+ +|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||.+++ +.|+
T Consensus 255 -----~~~~l~-~-~~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~-~~g~ 323 (384)
T 2p6p_A 255 -----VAEALR-A-EVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVA-DYGA 323 (384)
T ss_dssp -----HHHHHH-H-HCTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHH-HHTS
T ss_pred -----CHHhhC-C-CCCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCcccchHHHHHHH-HCCC
Confidence 011111 1 1468889 99999999988888 9999999999999999999999999999999999999 9999
Q ss_pred eEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 398 AVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 398 G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
|+.++.++ ++.++|.++|+++|+|+ +|+++++++++.+++.++..++++.+.+.+-
T Consensus 324 g~~~~~~~---~~~~~l~~~i~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 324 AIALLPGE---DSTEAIADSCQELQAKD-----TYARRAQDLSREISGMPLPATVVTALEQLAH 379 (384)
T ss_dssp EEECCTTC---CCHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred eEecCcCC---CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99998644 89999999999999998 9999999999999999888777776665553
No 16
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=3.4e-36 Score=299.67 Aligned_cols=364 Identities=12% Similarity=0.126 Sum_probs=246.7
Q ss_pred ccCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCC--
Q 012080 7 CSSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGA-- 84 (471)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 84 (471)
.+..+.+++||+|++.++.||++|+++||++|.++||+|+++++ .+...++..| ++++.++... .+....
T Consensus 13 ~~~~~~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~G-----~~~~~~~~~~--~~~~~~~~ 84 (398)
T 3oti_A 13 SGHIEGRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAAG-----LEVVDVAPDY--SAVKVFEQ 84 (398)
T ss_dssp ------CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTTT-----CEEEESSTTC--CHHHHHHH
T ss_pred ccchhhhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhCC-----CeeEecCCcc--CHHHHhhh
Confidence 34455677899999999999999999999999999999999999 7777777777 8888876220 000000
Q ss_pred -----C--------CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHH
Q 012080 85 -----E--------TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAAS 150 (471)
Q Consensus 85 -----~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~ 150 (471)
. ...........++..........+.+++++.+||+||+| ..+++..+|+.+|||++.........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~ 164 (398)
T 3oti_A 85 VAKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT 164 (398)
T ss_dssp HHHHCHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC
T ss_pred cccCCccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc
Confidence 0 001112233344445555677889999999999999999 78889999999999999765332100
Q ss_pred HHHhhccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccc
Q 012080 151 IATALVPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIE 230 (471)
Q Consensus 151 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 230 (471)
.. .. ..+. ........+........+..+......+.
T Consensus 165 --------------------------~~-------~~----~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (398)
T 3oti_A 165 --------------------------RG-------MH----RSIA------SFLTDLMDKHQVSLPEPVATIESFPPSLL 201 (398)
T ss_dssp --------------------------TT-------HH----HHHH------TTCHHHHHHTTCCCCCCSEEECSSCGGGG
T ss_pred --------------------------cc-------hh----hHHH------HHHHHHHHHcCCCCCCCCeEEEeCCHHHC
Confidence 00 00 0000 00111121111111112333332222222
Q ss_pred hhHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccC--CHHHHHHHHHHHHhcCCceEE
Q 012080 231 GDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIIL--EKKQFQELLLGLELTGLCFLI 308 (471)
Q Consensus 231 ~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~--~~~~~~~~~~al~~~~~~~~~ 308 (471)
.+.. ...+ ++.++. ...+..+.+|+...+++++||+++||.... ..+.+..++++++..+.+++|
T Consensus 202 ~~~~---~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 268 (398)
T 3oti_A 202 LEAE---PEGW--FMRWVP--------YGGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVL 268 (398)
T ss_dssp TTSC---CCSB--CCCCCC--------CCCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEE
T ss_pred CCCC---CCCC--CccccC--------CCCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEE
Confidence 1100 0001 111111 012334556776555678999999999653 456678888999888899999
Q ss_pred EeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhH
Q 012080 309 ALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNT 388 (471)
Q Consensus 309 ~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 388 (471)
+.+... .+.+. .+ ++|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||..||
T Consensus 269 ~~g~~~-~~~l~-~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a 335 (398)
T 3oti_A 269 ALGDLD-ISPLG-TL---------PRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHT 335 (398)
T ss_dssp ECTTSC-CGGGC-SC---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCCTTCCSSCT
T ss_pred EECCcC-hhhhc-cC---------CCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCCCchhHHHH
Confidence 987431 11111 12 358899999999999999988 999999999999999999999999999999999
Q ss_pred --HHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 389 --RLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 389 --~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
.+++ +.|+|+.++..+ .+.+.|. ++|+|+ +|+++++++++.+.+.++..+.++.+.+.+
T Consensus 336 ~~~~~~-~~g~g~~~~~~~---~~~~~l~----~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 336 AREAVS-RRGIGLVSTSDK---VDADLLR----RLIGDE-----SLRTAAREVREEMVALPTPAETVRRIVERI 396 (398)
T ss_dssp THHHHH-HHTSEEECCGGG---CCHHHHH----HHHHCH-----HHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHH-HCCCEEeeCCCC---CCHHHHH----HHHcCH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999 999999998754 7887776 889998 999999999999999988877777665543
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=8.1e-37 Score=304.15 Aligned_cols=364 Identities=16% Similarity=0.175 Sum_probs=232.3
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCC-CCCC--CCCCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHV-DGLP--AGAETA 87 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~--~~~~~~ 87 (471)
+..++||+|++.++.||++|++.||++|+++||+|++++++.+.+.++..| +.+..++.+.. ..+. ......
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G-----~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAG-----LPFAPTCPSLDMPEVLSWDREGNR 86 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTT-----CCEEEEESSCCHHHHHSBCTTSCB
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCC-----CeeEecCCccchHhhhhhhccCcc
Confidence 355689999999999999999999999999999999999988877777777 77777762100 0000 000000
Q ss_pred CCCC---h----hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhcccc
Q 012080 88 SDVP---M----SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPAR 159 (471)
Q Consensus 88 ~~~~---~----~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~ 159 (471)
.... . .....+..........+.+++++.+||+|++| ..+++..+|+.+|||++.+.........
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~------- 159 (398)
T 4fzr_A 87 TTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPEL------- 159 (398)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHH-------
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchh-------
Confidence 0000 0 11223333344566778888999999999999 7888999999999999976644211100
Q ss_pred CCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHH-hhhccCCEEEEcCccccchhHHHHHH
Q 012080 160 NVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERIT-TSLKESDAISIRTCHEIEGDLCEYIA 238 (471)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~~ 238 (471)
+.....+.+ .....+.. ......+..+......+....
T Consensus 160 --------------------------~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 198 (398)
T 4fzr_A 160 --------------------------IKSAGVGEL----------APELAELGLTDFPDPLLSIDVCPPSMEAQP----- 198 (398)
T ss_dssp --------------------------HHHHHHHHT----------HHHHHTTTCSSCCCCSEEEECSCGGGC--------
T ss_pred --------------------------hhHHHHHHH----------HHHHHHcCCCCCCCCCeEEEeCChhhCCCC-----
Confidence 000000000 00000000 001112333433333333211
Q ss_pred HHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccC--------CHHHHHHHHHHHHhcCCceEEEe
Q 012080 239 RQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIIL--------EKKQFQELLLGLELTGLCFLIAL 310 (471)
Q Consensus 239 ~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~--------~~~~~~~~~~al~~~~~~~~~~~ 310 (471)
.....++.++++. ..+.++.+|+...+++++||+++||.... ..+.+..++++++..+.+++|+.
T Consensus 199 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~v~~~ 271 (398)
T 4fzr_A 199 KPGTTKMRYVPYN-------GRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAV 271 (398)
T ss_dssp -CCCEECCCCCCC-------CSSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHHHGGGGTCEEEECC
T ss_pred CCCCCCeeeeCCC-------CCCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhCCCEEEEEe
Confidence 0011112222211 02234456665545577999999999653 23457888999988889999887
Q ss_pred CCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHH
Q 012080 311 KPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRL 390 (471)
Q Consensus 311 ~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~ 390 (471)
+... .+.+.. + ++|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||+.||.+
T Consensus 272 ~~~~-~~~l~~-~---------~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~ 338 (398)
T 4fzr_A 272 SDKL-AQTLQP-L---------PEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARL 338 (398)
T ss_dssp CC----------C---------CTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSGGGHHHHHH
T ss_pred CCcc-hhhhcc-C---------CCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCEEecCCchhHHHHHHH
Confidence 6421 111111 2 458899999999999999998 99999999999999999999999999999999999
Q ss_pred HHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHH
Q 012080 391 LAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKF 456 (471)
Q Consensus 391 v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~ 456 (471)
++ +.|+|+.++.++ ++.+.|.++|+++|+|+ +|++++++.++.+.+.++..+.++.+
T Consensus 339 ~~-~~g~g~~~~~~~---~~~~~l~~ai~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (398)
T 4fzr_A 339 LH-AAGAGVEVPWEQ---AGVESVLAACARIRDDS-----SYVGNARRLAAEMATLPTPADIVRLI 395 (398)
T ss_dssp HH-HTTSEEECC----------CHHHHHHHHHHCT-----HHHHHHHHHHHHHTTSCCHHHHHHHH
T ss_pred HH-HcCCEEecCccc---CCHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99 999999998754 89999999999999999 99999999999999888776666554
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=4.7e-34 Score=283.47 Aligned_cols=359 Identities=13% Similarity=0.152 Sum_probs=242.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEe-cCCCC-C-C----CCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPL-TVPHV-D-G----LPAGAETA 87 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~-~-~----~~~~~~~~ 87 (471)
+||+|++.++.||++|++.|+++|+++||+|++++++...+.+...| +++..+ +.+.. . . .+......
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAG-----LTTAGIRGNDRTGDTGGTTQLRFPNPAF 76 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBT-----CEEEEC--------------CCSCCGGG
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCC-----CceeeecCCccchhhhhhhccccccccc
Confidence 69999999999999999999999999999999999988777776666 777776 31100 0 0 00000000
Q ss_pred CCC-ChhhHHHHHHHHHHh-------HHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhhccc
Q 012080 88 SDV-PMSSINLLVIAMDRC-------RGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATALVPA 158 (471)
Q Consensus 88 ~~~-~~~~~~~~~~~~~~~-------~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~ 158 (471)
... .......+......+ ...+.+++++.+||+||+| ..+++..+|+.+|||++.+.......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~-------- 148 (391)
T 3tsa_A 77 GQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPT-------- 148 (391)
T ss_dssp GCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCT--------
T ss_pred ccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccc--------
Confidence 000 011222333333344 6778889999999999999 78888999999999999765432100
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhh-----ccCCEEEEcCccccchhH
Q 012080 159 RNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSL-----KESDAISIRTCHEIEGDL 233 (471)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~~ 233 (471)
... .. ........+....+ ...+..+.....+++...
T Consensus 149 ---------------------~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (391)
T 3tsa_A 149 ---------------------AGP---FS--------------DRAHELLDPVCRHHGLTGLPTPELILDPCPPSLQASD 190 (391)
T ss_dssp ---------------------TTH---HH--------------HHHHHHHHHHHHHTTSSSSCCCSEEEECSCGGGSCTT
T ss_pred ---------------------ccc---cc--------------chHHHHHHHHHHHcCCCCCCCCceEEEecChhhcCCC
Confidence 000 00 00001111111111 112444443333333110
Q ss_pred HHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCcccc--CC-HHHHHHHHHHHHhc-CCceEEE
Q 012080 234 CEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQII--LE-KKQFQELLLGLELT-GLCFLIA 309 (471)
Q Consensus 234 ~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~--~~-~~~~~~~~~al~~~-~~~~~~~ 309 (471)
.....++.++ |. ..+..+..|+...+++++|++++||... .. ...+..++++ +.. +.+++|+
T Consensus 191 -----~~~~~~~~~~-p~-------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~ 256 (391)
T 3tsa_A 191 -----APQGAPVQYV-PY-------NGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIA 256 (391)
T ss_dssp -----SCCCEECCCC-CC-------CCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEE
T ss_pred -----CCccCCeeee-cC-------CCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEE
Confidence 0011112222 11 1123345677655567899999999854 23 6667888888 766 7788888
Q ss_pred eCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHH
Q 012080 310 LKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTR 389 (471)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~ 389 (471)
.+.. ..+. +.. ..+|+++.+|+|+.++|+++++ ||||||.||++||+++|+|+|++|...||..|+.
T Consensus 257 ~~~~-~~~~----l~~------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~ 323 (391)
T 3tsa_A 257 VPPE-HRAL----LTD------LPDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQLVLPQYFDQFDYAR 323 (391)
T ss_dssp CCGG-GGGG----CTT------CCTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCEEECCCSTTHHHHHH
T ss_pred ECCc-chhh----ccc------CCCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCEEecCCcccHHHHHH
Confidence 6532 1111 111 2458899999999999988888 9999999999999999999999999999999999
Q ss_pred HHHHhhcceEEeec--ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHH
Q 012080 390 LLAEELKVAVEVER--EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNM 460 (471)
Q Consensus 390 ~v~~~~G~G~~l~~--~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~ 460 (471)
+++ +.|+|+.+.. ++ .+.+.|.++|.++|+|+ +++++++++++.+.+.++..+.++.+.+.+
T Consensus 324 ~~~-~~g~g~~~~~~~~~---~~~~~l~~ai~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 324 NLA-AAGAGICLPDEQAQ---SDHEQFTDSIATVLGDT-----GFAAAAIKLSDEITAMPHPAALVRTLENTA 387 (391)
T ss_dssp HHH-HTTSEEECCSHHHH---TCHHHHHHHHHHHHTCT-----HHHHHHHHHHHHHHTSCCHHHHHHHHHHC-
T ss_pred HHH-HcCCEEecCccccc---CCHHHHHHHHHHHHcCH-----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999 9999999986 55 89999999999999999 999999999999998888777766665443
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=6.6e-33 Score=277.06 Aligned_cols=366 Identities=16% Similarity=0.151 Sum_probs=250.6
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCC-------------CC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVP-------------HV 77 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-------------~~ 77 (471)
...++||+|++.++.||++|++.||++|+++||+|++++++.....+...| +++..++.. ..
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLG-----FEPVATGMPVFDGFLAALRIRFDT 91 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHTT-----CEEEECCCCHHHHHHHHHHHHHSC
T ss_pred ccceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhcC-----CceeecCcccccchhhhhhhhhcc
Confidence 355689999999999999999999999999999999999987766666666 888887620 00
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHH-HHHhHHHHHHHHHhCCCcEEEEc-CccchHHHHHHcCCceEEEecchhHHHHHhh
Q 012080 78 DGLPAGAETASDVPMSSINLLVIA-MDRCRGQVEAVIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNVVCAASIATAL 155 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 155 (471)
...+.. . ...........+... .......+.+++++.+||+||+| ..+++..+|+.+|||++.........
T Consensus 92 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~----- 164 (412)
T 3otg_A 92 DSPEGL-T-PEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTP----- 164 (412)
T ss_dssp SCCTTC-C-HHHHTTSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCC-----
T ss_pred cCCccC-C-hhHhhHHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEecccccCc-----
Confidence 000000 0 000001122233322 33445778889999999999999 67778889999999999765432100
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhh----------hccCCEEEEcC
Q 012080 156 VPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTS----------LKESDAISIRT 225 (471)
Q Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~ 225 (471)
+. .. .. ....+.+.... ....+.++..+
T Consensus 165 ------------------------~~----~~----~~----------~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~ 202 (412)
T 3otg_A 165 ------------------------DD----LT----RS----------IEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIF 202 (412)
T ss_dssp ------------------------SH----HH----HH----------HHHHHHHHHHHTTCCCCSSCCGGGGCCEEECS
T ss_pred ------------------------hh----hh----HH----------HHHHHHHHHHHcCCCCCcccccCCCCeEEeeC
Confidence 00 00 00 00011111110 12234455544
Q ss_pred ccccchhHHHHHHHHcCCCeEEeccCCCCCCCCCChhhhhhc-cCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCC
Q 012080 226 CHEIEGDLCEYIARQYNKPVFLTGPVLHEPAKTPSEERWDKW-LGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGL 304 (471)
Q Consensus 226 ~~~l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~l~~~-l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~ 304 (471)
..+++.. ...+......+-+... ....+..+| ....+++++|++++|+......+.+..++++++..+.
T Consensus 203 ~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~ 272 (412)
T 3otg_A 203 PPSLQEP-----EFRARPRRHELRPVPF-----AEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDA 272 (412)
T ss_dssp CGGGSCH-----HHHTCTTEEECCCCCC-----CCCCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSS
T ss_pred CHHhcCC-----cccCCCCcceeeccCC-----CCCCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCC
Confidence 4444321 1112211111111111 112233455 2223346799999999976667888889999988888
Q ss_pred ceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccc
Q 012080 305 CFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQ 384 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ 384 (471)
+++|+.+.+...+.+.. + .+|+.+.+|+|+.++|+++++ ||+|||+||++||+++|+|+|++|...||
T Consensus 273 ~~~~~~g~~~~~~~l~~-~---------~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~v~~p~~~~q 340 (412)
T 3otg_A 273 DVLVASGPSLDVSGLGE-V---------PANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDS 340 (412)
T ss_dssp EEEEECCSSCCCTTCCC-C---------CTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCEEECCCSTTH
T ss_pred EEEEEECCCCChhhhcc-C---------CCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCEEecCCchhH
Confidence 99999875432222221 2 347899999999999999998 99999999999999999999999999999
Q ss_pred hhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHH
Q 012080 385 ILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMR 461 (471)
Q Consensus 385 ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~ 461 (471)
..|+..++ +.|+|..+...+ +++++|.++|.++|+|+ ++++++.+.++.+.+..+..+.++.+.+.+.
T Consensus 341 ~~~~~~v~-~~g~g~~~~~~~---~~~~~l~~ai~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 341 FANAQAVA-QAGAGDHLLPDN---ISPDSVSGAAKRLLAEE-----SYRAGARAVAAEIAAMPGPDEVVRLLPGFAS 408 (412)
T ss_dssp HHHHHHHH-HHTSEEECCGGG---CCHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHHSCCHHHHHTTHHHHHC
T ss_pred HHHHHHHH-HcCCEEecCccc---CCHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 99999999 999999999754 89999999999999998 9999999999998888777777776666553
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.97 E-value=4.8e-29 Score=244.48 Aligned_cols=345 Identities=14% Similarity=0.068 Sum_probs=205.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc--hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA--QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
.||+|...++.||++|+++||++|+++||+|+|+++..- ...+...| ++++.++.. +++.. ...+...
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g-----~~~~~i~~~---~~~~~--~~~~~~~ 72 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAG-----LPLHLIQVS---GLRGK--GLKSLVK 72 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGT-----CCEEECC-------------------
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcC-----CcEEEEECC---CcCCC--CHHHHHH
Confidence 489998888889999999999999999999999997753 23445555 777777632 11110 0011111
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
..+.++. .......++++.+||+||++ + +..+..+|+.+|||+++.....
T Consensus 73 ~~~~~~~-----~~~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vihe~n~---------------------- 125 (365)
T 3s2u_A 73 APLELLK-----SLFQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIHEQNA---------------------- 125 (365)
T ss_dssp CHHHHHH-----HHHHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEEECSS----------------------
T ss_pred HHHHHHH-----HHHHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEEecch----------------------
Confidence 1112221 22345678899999999999 3 5556678899999998643211
Q ss_pred cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEec
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTG 249 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 249 (471)
.|. ...++. .+.++.++. .+++..+ ...++.++|
T Consensus 126 ---------~~G-------------------------~~nr~l--~~~a~~v~~-~~~~~~~---------~~~k~~~~g 159 (365)
T 3s2u_A 126 ---------VAG-------------------------TANRSL--APIARRVCE-AFPDTFP---------ASDKRLTTG 159 (365)
T ss_dssp ---------SCC-------------------------HHHHHH--GGGCSEEEE-SSTTSSC---------C---CEECC
T ss_pred ---------hhh-------------------------hHHHhh--ccccceeee-ccccccc---------CcCcEEEEC
Confidence 111 011111 122333333 2222111 123567788
Q ss_pred cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc----CCceEEEeCCCCCCCcccccCCh
Q 012080 250 PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT----GLCFLIALKPPTGASTVEEAFPD 325 (471)
Q Consensus 250 p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~p~ 325 (471)
+......... . .......++++.|++..||..... ..+.+.++++.. +..++|..+.+ ..+
T Consensus 160 ~pvr~~~~~~--~--~~~~~~~~~~~~ilv~gGs~g~~~--~~~~~~~al~~l~~~~~~~vi~~~G~~---------~~~ 224 (365)
T 3s2u_A 160 NPVRGELFLD--A--HARAPLTGRRVNLLVLGGSLGAEP--LNKLLPEALAQVPLEIRPAIRHQAGRQ---------HAE 224 (365)
T ss_dssp CCCCGGGCCC--T--TSSCCCTTSCCEEEECCTTTTCSH--HHHHHHHHHHTSCTTTCCEEEEECCTT---------THH
T ss_pred CCCchhhccc--h--hhhcccCCCCcEEEEECCcCCccc--cchhhHHHHHhcccccceEEEEecCcc---------ccc
Confidence 5443211100 0 111112234568999889886532 223344555433 34566665532 111
Q ss_pred hHHHh--hCCCcEEeccccCch-hhhcccCcceeeccCCcchHHHHHhhCCcEEecccc----ccchhhHHHHHHhhcce
Q 012080 326 GFAER--TKGRGVVCGEWVEQM-PILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL----GDQILNTRLLAEELKVA 398 (471)
Q Consensus 326 ~~~~~--~~~~nv~~~~~~pq~-~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~na~~v~~~~G~G 398 (471)
...+. ..+.++.+.+|+++. ++++.+|+ +|||+|.+|++|++++|+|+|.+|+- .+|..||+.++ +.|+|
T Consensus 225 ~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~-~~G~a 301 (365)
T 3s2u_A 225 ITAERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLV-RSGAG 301 (365)
T ss_dssp HHHHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHH-TTTSE
T ss_pred cccceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHH-HCCCE
Confidence 12211 124567788899985 69999999 99999999999999999999999963 68999999999 99999
Q ss_pred EEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcccccc
Q 012080 399 VEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSCEV 468 (471)
Q Consensus 399 ~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 468 (471)
+.++.++ ++++.|.++|.++|+|+ +..+.|.++|++ +....+.++.++.+++...++.-+-+
T Consensus 302 ~~l~~~~---~~~~~L~~~i~~ll~d~-~~~~~m~~~a~~----~~~~~aa~~ia~~i~~larG~e~~~~ 363 (365)
T 3s2u_A 302 RLLPQKS---TGAAELAAQLSEVLMHP-ETLRSMADQARS----LAKPEATRTVVDACLEVARGLEHHHH 363 (365)
T ss_dssp EECCTTT---CCHHHHHHHHHHHHHCT-HHHHHHHHHHHH----TCCTTHHHHHHHHHHHHC--------
T ss_pred EEeecCC---CCHHHHHHHHHHHHCCH-HHHHHHHHHHHh----cCCccHHHHHHHHHHHHHccchhccc
Confidence 9998655 99999999999999997 333344444433 32333444445555555566554333
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=208.07 Aligned_cols=165 Identities=19% Similarity=0.282 Sum_probs=138.3
Q ss_pred CCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcE
Q 012080 258 TPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGV 336 (471)
Q Consensus 258 ~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv 336 (471)
+.+++++.+|++..+++++||+++||... .+...+..++.+++..+.+++|+.+.... +.+ ++|+
T Consensus 5 ~~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~-----~~~---------~~~v 70 (170)
T 2o6l_A 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKP-----DTL---------GLNT 70 (170)
T ss_dssp CCCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCC-----TTC---------CTTE
T ss_pred CCCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCc-----ccC---------CCcE
Confidence 35788999999876667899999999963 56677888999998888999999864210 112 3478
Q ss_pred EeccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHH
Q 012080 337 VCGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCK 416 (471)
Q Consensus 337 ~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ 416 (471)
++.+|+||.+++.|+++++||||||+||++|++++|+|+|++|...||..||.+++ +.|+|+.++.++ ++.++|.+
T Consensus 71 ~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~-~~g~g~~~~~~~---~~~~~l~~ 146 (170)
T 2o6l_A 71 RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMK-ARGAAVRVDFNT---MSSTDLLN 146 (170)
T ss_dssp EEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH-TTTSEEECCTTT---CCHHHHHH
T ss_pred EEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHH-HcCCeEEecccc---CCHHHHHH
Confidence 99999999999966666669999999999999999999999999999999999999 999999998644 89999999
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 417 AIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 417 ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+|.+++.|+ +|+++|+++++.+++
T Consensus 147 ~i~~ll~~~-----~~~~~a~~~~~~~~~ 170 (170)
T 2o6l_A 147 ALKRVINDP-----SYKENVMKLSRIQHD 170 (170)
T ss_dssp HHHHHHHCH-----HHHHHHHHHC-----
T ss_pred HHHHHHcCH-----HHHHHHHHHHHHhhC
Confidence 999999998 999999999998864
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.88 E-value=2.4e-20 Score=182.64 Aligned_cols=343 Identities=14% Similarity=0.071 Sum_probs=208.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch--hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
+||++++.+..||..+++.||++|.++||+|++++..... ..+...| ++++.++.. .++.. ...
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~g-----~~~~~~~~~---~~~~~------~~~ 72 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHG-----IEIDFIRIS---GLRGK------GIK 72 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGGT-----CEEEECCCC---CCTTC------CHH
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhccccC-----CceEEecCC---ccCcC------ccH
Confidence 7999998777799999999999999999999999987632 2233334 777776532 11110 000
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCc
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTE 169 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 169 (471)
........ .......+.+++++.+||+|+++ . ...+..+++.+|+|++......
T Consensus 73 ~~~~~~~~-~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------------- 129 (364)
T 1f0k_A 73 ALIAAPLR-IFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNG---------------------- 129 (364)
T ss_dssp HHHTCHHH-HHHHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSS----------------------
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCC----------------------
Confidence 00000001 11234567778888899999999 3 3455667888999998543211
Q ss_pred cccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCCCeEEec
Q 012080 170 AELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNKPVFLTG 249 (471)
Q Consensus 170 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v~~vG 249 (471)
++. ...+.. ....+.+++.+... ++ ++.++|
T Consensus 130 ---------~~~-------------------------~~~~~~--~~~~d~v~~~~~~~------------~~-~~~~i~ 160 (364)
T 1f0k_A 130 ---------IAG-------------------------LTNKWL--AKIATKVMQAFPGA------------FP-NAEVVG 160 (364)
T ss_dssp ---------SCC-------------------------HHHHHH--TTTCSEEEESSTTS------------SS-SCEECC
T ss_pred ---------CCc-------------------------HHHHHH--HHhCCEEEecChhh------------cC-CceEeC
Confidence 000 001111 22345555543221 22 466666
Q ss_pred cCCCCCCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc--CCceEEEeCCCCCCCcccccCChhH
Q 012080 250 PVLHEPAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT--GLCFLIALKPPTGASTVEEAFPDGF 327 (471)
Q Consensus 250 p~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~p~~~ 327 (471)
.......-.. +. ..+.+...+++++|++..|+... ......++++++.. +.++++.++.+. . +.+.+ .
T Consensus 161 n~v~~~~~~~-~~-~~~~~~~~~~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~-~----~~l~~-~ 230 (364)
T 1f0k_A 161 NPVRTDVLAL-PL-PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS-Q----QSVEQ-A 230 (364)
T ss_dssp CCCCHHHHTS-CC-HHHHHTTCCSSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC-H----HHHHH-H
T ss_pred Cccchhhccc-ch-hhhhcccCCCCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch-H----HHHHH-H
Confidence 4322100000 00 01111122234577777788743 33344455665443 456667666431 0 11111 1
Q ss_pred HHhhCCCcEEeccccCc-hhhhcccCcceeeccCCcchHHHHHhhCCcEEecccc---ccchhhHHHHHHhhcceEEeec
Q 012080 328 AERTKGRGVVCGEWVEQ-MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL---GDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 328 ~~~~~~~nv~~~~~~pq-~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
....+-+++.+.+|+++ .++++.+++ ||+++|.++++||+++|+|+|+.|.. .||..|+..+. +.|.|..++.
T Consensus 231 ~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~-~~g~g~~~~~ 307 (364)
T 1f0k_A 231 YAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLE-KAGAAKIIEQ 307 (364)
T ss_dssp HHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHH-HTTSEEECCG
T ss_pred HhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHH-hCCcEEEecc
Confidence 11222247888899955 679999999 99999999999999999999999987 79999999999 9999999986
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcccc
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSC 466 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 466 (471)
.+ ++.++|.++|.++ |+ +.+++..+-+....+..+..+.++.+.+.+.+...+
T Consensus 308 ~d---~~~~~la~~i~~l--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 308 PQ---LSVDAVANTLAGW--SR-----ETLLTMAERARAASIPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp GG---CCHHHHHHHHHTC--CH-----HHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC---
T ss_pred cc---CCHHHHHHHHHhc--CH-----HHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHhh
Confidence 43 7799999999998 65 444444443344444455556677777777666544
No 23
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.61 E-value=3.9e-14 Score=131.96 Aligned_cols=116 Identities=13% Similarity=0.045 Sum_probs=89.3
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccCch-hhhccc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQM-PILEHS 351 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq~-~lL~~~ 351 (471)
.+.|+|++|..... .....+++++.... ++.++.+.+.. ..+.+.... ..+|+.+..|+++. +++..+
T Consensus 157 ~~~ILv~~GG~d~~--~l~~~vl~~L~~~~-~i~vv~G~~~~-------~~~~l~~~~~~~~~v~v~~~~~~m~~~m~~a 226 (282)
T 3hbm_A 157 KYDFFICMGGTDIK--NLSLQIASELPKTK-IISIATSSSNP-------NLKKLQKFAKLHNNIRLFIDHENIAKLMNES 226 (282)
T ss_dssp CEEEEEECCSCCTT--CHHHHHHHHSCTTS-CEEEEECTTCT-------THHHHHHHHHTCSSEEEEESCSCHHHHHHTE
T ss_pred CCeEEEEECCCchh--hHHHHHHHHhhcCC-CEEEEECCCch-------HHHHHHHHHhhCCCEEEEeCHHHHHHHHHHC
Confidence 45899999976433 35556777775543 57777765321 122232221 23588998999986 699999
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeec
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVER 403 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 403 (471)
++ +||+|| +|++|+++.|+|+|++|...+|..||+.++ +.|++..+..
T Consensus 227 Dl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~-~~G~~~~~~~ 274 (282)
T 3hbm_A 227 NK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLA-KKGYEVEYKY 274 (282)
T ss_dssp EE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHH-HTTCEEECGG
T ss_pred CE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHH-HCCCEEEcch
Confidence 99 999999 899999999999999999999999999999 9999999886
No 24
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.56 E-value=1.2e-14 Score=129.83 Aligned_cols=138 Identities=16% Similarity=0.171 Sum_probs=94.8
Q ss_pred CCcEEEEEeCccccCCHHHHHH-----HHHHHHhcC-CceEEEeCCCCCC--Cccc-cc--------CChhH------HH
Q 012080 273 RSSVVYCAFGSQIILEKKQFQE-----LLLGLELTG-LCFLIALKPPTGA--STVE-EA--------FPDGF------AE 329 (471)
Q Consensus 273 ~~~vV~vs~Gs~~~~~~~~~~~-----~~~al~~~~-~~~~~~~~~~~~~--~~~~-~~--------~p~~~------~~ 329 (471)
+++.|||+.||...+ .+.+.. ++.+|...+ .++++.++..... +... .. +|.+. ..
T Consensus 27 ~~~~VlVtgGS~~~~-n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~ 105 (224)
T 2jzc_A 27 EEKALFVTCGATVPF-PKLVSCVLSDEFCQELIQYGFVRLIIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTAR 105 (224)
T ss_dssp CSCCEEEECCSCCSC-HHHHHHHTSHHHHHHHHTTTCCCEEECCCSSSCCCCCSHHHHHTCEECSCCCSSCTTCTTCSCE
T ss_pred CCCEEEEEcCCchHH-HHHHHHHHHHHHHHHHhcCCCeEEEEEECCCchhhHHHHHHhhhcccccccccccccccccccc
Confidence 467999999998432 233333 347777776 7888888854320 1000 00 12100 00
Q ss_pred ----hhCCCcEEeccccCch-hhhc-ccCcceeeccCCcchHHHHHhhCCcEEecccc----ccchhhHHHHHHhhcceE
Q 012080 330 ----RTKGRGVVCGEWVEQM-PILE-HSSVGCFVSHCGFGSMWESLMSDCQIVLVPHL----GDQILNTRLLAEELKVAV 399 (471)
Q Consensus 330 ----~~~~~nv~~~~~~pq~-~lL~-~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~----~DQ~~na~~v~~~~G~G~ 399 (471)
....-++.+.+|+++. ++|+ .+++ +|||||.||++|++++|+|+|++|.. .||..||++++ +.|+|+
T Consensus 106 ~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~-~~G~~~ 182 (224)
T 2jzc_A 106 QYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFV-ELGYVW 182 (224)
T ss_dssp EEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHH-HHSCCC
T ss_pred ccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHH-HCCCEE
Confidence 0001245677888886 7999 9999 99999999999999999999999973 46999999999 999987
Q ss_pred EeecccCCcccHHHHHHHHHHHh
Q 012080 400 EVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 400 ~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
.+ +.++|.++|+++.
T Consensus 183 ~~--------~~~~L~~~i~~l~ 197 (224)
T 2jzc_A 183 SC--------APTETGLIAGLRA 197 (224)
T ss_dssp EE--------CSCTTTHHHHHHH
T ss_pred Ec--------CHHHHHHHHHHHH
Confidence 65 3355777787764
No 25
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.47 E-value=8.1e-11 Score=117.68 Aligned_cols=352 Identities=13% Similarity=0.090 Sum_probs=182.8
Q ss_pred CCCCeEEEecC-----------CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCC
Q 012080 12 SSAFPIVMLPW-----------FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGL 80 (471)
Q Consensus 12 ~~~~~il~~~~-----------~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (471)
.+|+||++++. ...|+-..+..+|+.|.++||+|++++.......... .....+++++.++......+
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~-~~~~~~v~v~~~~~~~~~~~ 96 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEI-VRVAENLRVINIAAGPYEGL 96 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSE-EEEETTEEEEEECCSCSSSC
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCccc-ccccCCeEEEEecCCCcccc
Confidence 67789999974 2357889999999999999999999987653221100 00112377777653210000
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHhHHHHHHH-HHhC-CCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhh
Q 012080 81 PAGAETASDVPMSSINLLVIAMDRCRGQVEAV-IKAA-KPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATAL 155 (471)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~-~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 155 (471)
. .......+.. ....+... ++.. +||+|++. . ...+..+++.+++|+|..........
T Consensus 97 ~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~---- 159 (438)
T 3c48_A 97 S---------KEELPTQLAA----FTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK---- 159 (438)
T ss_dssp C---------GGGGGGGHHH----HHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHH----
T ss_pred c---------hhHHHHHHHH----HHHHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccc----
Confidence 0 0011111111 11222233 4444 49999998 3 33445577889999987655432110
Q ss_pred ccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHH
Q 012080 156 VPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCE 235 (471)
Q Consensus 156 ~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 235 (471)
. ..+... ... . ......+.+ ..+...+.+++.+-.. .+
T Consensus 160 ~--------------------~~~~~~----------~~~--~---~~~~~~~~~--~~~~~~d~ii~~s~~~-----~~ 197 (438)
T 3c48_A 160 N--------------------SYRDDS----------DTP--E---SEARRICEQ--QLVDNADVLAVNTQEE-----MQ 197 (438)
T ss_dssp S--------------------CC--------------CCH--H---HHHHHHHHH--HHHHHCSEEEESSHHH-----HH
T ss_pred c--------------------cccccc----------CCc--c---hHHHHHHHH--HHHhcCCEEEEcCHHH-----HH
Confidence 0 000000 000 0 000011111 2245678888776542 23
Q ss_pred HHHHHcC---CCeEEeccCCCCCC-CCCChh---hhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhc----C
Q 012080 236 YIARQYN---KPVFLTGPVLHEPA-KTPSEE---RWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELT----G 303 (471)
Q Consensus 236 ~~~~~~~---~~v~~vGp~~~~~~-~~~~~~---~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~----~ 303 (471)
.+...++ .++..++.-..... ...... .+.+.+.-. +...+++..|+... ...+.+.+.+..+... +
T Consensus 198 ~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~ 276 (438)
T 3c48_A 198 DLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIP-LHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRN 276 (438)
T ss_dssp HHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCC-SSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCC-CCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcc
Confidence 3333232 34666664332211 000011 122323221 23366777888754 2333333333333222 2
Q ss_pred CceEEEeCCCCCCCcccccCChhHH---HhhC-CCcEEeccccCch---hhhcccCcceeecc----CCcchHHHHHhhC
Q 012080 304 LCFLIALKPPTGASTVEEAFPDGFA---ERTK-GRGVVCGEWVEQM---PILEHSSVGCFVSH----CGFGSMWESLMSD 372 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~-~~nv~~~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~Eal~~G 372 (471)
.+++ .++....... ..+.+. .+.+ .++|.+.+|+|+. +++..+++ +|.- |..++++||+++|
T Consensus 277 ~~l~-i~G~~~~~g~----~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G 349 (438)
T 3c48_A 277 LRVI-ICGGPSGPNA----TPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAMEAQASG 349 (438)
T ss_dssp EEEE-EECCBC----------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHHTT
T ss_pred eEEE-EEeCCCCCCc----HHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHHHHHcC
Confidence 3333 3342100000 111222 2222 4689999999864 57888998 6643 3346899999999
Q ss_pred CcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhh
Q 012080 373 CQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 373 vP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
+|+|+.+. ......+. +-+.|..++. -+.+++.++|.++++|+ +..+.+.+++++..+.
T Consensus 350 ~PvI~~~~----~~~~e~i~-~~~~g~~~~~-----~d~~~la~~i~~l~~~~-~~~~~~~~~~~~~~~~ 408 (438)
T 3c48_A 350 TPVIAARV----GGLPIAVA-EGETGLLVDG-----HSPHAWADALATLLDDD-ETRIRMGEDAVEHART 408 (438)
T ss_dssp CCEEEESC----TTHHHHSC-BTTTEEEESS-----CCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred CCEEecCC----CChhHHhh-CCCcEEECCC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHh
Confidence 99999763 34555566 6667888875 57899999999999985 4455566666665554
No 26
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.45 E-value=3.2e-12 Score=125.27 Aligned_cols=310 Identities=15% Similarity=0.093 Sum_probs=162.8
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhh----hccCCCCCCCeEE-EEecCCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQ----LQHFNLHPDLITL-HPLTVPHVDGLPAGAET 86 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~----~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~ 86 (471)
.|+||++++.. .+.......++++|.++ ||+|.++++...... ...++ +.+ ..++. .. .
T Consensus 4 ~mmkIl~v~~~-~~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~------~~--~- 68 (376)
T 1v4v_A 4 GMKRVVLAFGT-RPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSLFG-----IQEDRNLDV------MQ--E- 68 (376)
T ss_dssp CCEEEEEEECS-HHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHTTT-----CCCSEECCC------CS--S-
T ss_pred CceEEEEEEec-cHHHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHHcC-----CCccccccc------CC--C-
Confidence 45799998743 33344567789999998 899887766543221 12222 322 22221 00 0
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCC
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVP 162 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~ 162 (471)
....... .......+.+++++.+||+|++- . ...+..+|+.+|+|++.+.....
T Consensus 69 ----~~~~~~~----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~-------------- 126 (376)
T 1v4v_A 69 ----RQALPDL----AARILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLR-------------- 126 (376)
T ss_dssp ----CCCHHHH----HHHHHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCC--------------
T ss_pred ----CccHHHH----HHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCc--------------
Confidence 0111111 11233567788889999999994 2 33456688899999874332110
Q ss_pred CCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHH-c
Q 012080 163 KDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQ-Y 241 (471)
Q Consensus 163 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-~ 241 (471)
. +. . .... ......+.. ....+.+++.+-. ..+.+... .
T Consensus 127 --------------~-~~-----~-----------~~~~--~~~~~~~~~--~~~~~~~~~~s~~-----~~~~l~~~g~ 166 (376)
T 1v4v_A 127 --------------S-GN-----L-----------KEPF--PEEANRRLT--DVLTDLDFAPTPL-----AKANLLKEGK 166 (376)
T ss_dssp --------------C-SC-----T-----------TSST--THHHHHHHH--HHHCSEEEESSHH-----HHHHHHTTTC
T ss_pred --------------c-cc-----c-----------cCCC--chHHHHHHH--HHHhceeeCCCHH-----HHHHHHHcCC
Confidence 0 00 0 0000 001111111 1224555554432 11222221 1
Q ss_pred -CCCeEEeccCCCCCCCC-CChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCCceEEEeCCCC
Q 012080 242 -NKPVFLTGPVLHEPAKT-PSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGLCFLIALKPPT 314 (471)
Q Consensus 242 -~~~v~~vGp~~~~~~~~-~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~~~~~~~~~ 314 (471)
+.++.++|....+.... ....++.+.+ ++++.|+++.|...... .+..++++++. .+.++++..+.+.
T Consensus 167 ~~~ki~vi~n~~~d~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~~ 241 (376)
T 1v4v_A 167 REEGILVTGQTGVDAVLLAAKLGRLPEGL---PEGPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLNP 241 (376)
T ss_dssp CGGGEEECCCHHHHHHHHHHHHCCCCTTC---CSSCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSCH
T ss_pred CcceEEEECCchHHHHhhhhhhhHHHHhc---CCCCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCCH
Confidence 12466776321110000 0000111112 12457777777553221 34445555532 2455555434210
Q ss_pred CCCcccccCChhHHHhh-CCCcEEeccccCc---hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHH
Q 012080 315 GASTVEEAFPDGFAERT-KGRGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRL 390 (471)
Q Consensus 315 ~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~ 390 (471)
. .-+.+.+.. ..+++++.+++++ .++++.+++ ||+..| |.++||+++|+|+|+.+..+++..
T Consensus 242 ---~----~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~---- 307 (376)
T 1v4v_A 242 ---V----VREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPE---- 307 (376)
T ss_dssp ---H----HHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHH----
T ss_pred ---H----HHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchh----
Confidence 0 111222211 2357888856554 478889998 999883 446699999999999987677665
Q ss_pred HHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 391 LAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 391 v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
+. +.|.|..++ .+.++|.++|.++++|+
T Consensus 308 ~~-~~g~g~lv~------~d~~~la~~i~~ll~d~ 335 (376)
T 1v4v_A 308 GL-KAGILKLAG------TDPEGVYRVVKGLLENP 335 (376)
T ss_dssp HH-HHTSEEECC------SCHHHHHHHHHHHHTCH
T ss_pred hh-cCCceEECC------CCHHHHHHHHHHHHhCh
Confidence 35 567887775 37899999999999886
No 27
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.43 E-value=2.1e-12 Score=126.86 Aligned_cols=352 Identities=11% Similarity=0.059 Sum_probs=179.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCchh----hhccCCCCCCCeEE-EEecCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGH-KITILLPRKAQT----QLQHFNLHPDLITL-HPLTVPHVDGLPAGAETAS 88 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh-~Vt~~~~~~~~~----~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 88 (471)
+||++++. ..++...+..|+++|.++|+ ++.++.+..... .....+ +.+ ..++.. ..
T Consensus 1 mkIl~v~~-~~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~----- 63 (384)
T 1vgv_A 1 MKVLTVFG-TRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKLFS-----IVPDYDLNIM------QP----- 63 (384)
T ss_dssp CEEEEEEC-SHHHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHHHT-----CCCSEECCCC------ST-----
T ss_pred CeEEEEec-ccHHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHHcC-----CCCCcceecC------CC-----
Confidence 47888764 36777888999999999994 877655433211 122223 222 232210 00
Q ss_pred CCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCC
Q 012080 89 DVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKD 164 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~ 164 (471)
....... .......+.+++++.+||+|++- . ...+..+|+.+|+|++.......
T Consensus 64 --~~~~~~~----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~---------------- 121 (384)
T 1vgv_A 64 --GQGLTEI----TCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLR---------------- 121 (384)
T ss_dssp --TSCHHHH----HHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCC----------------
T ss_pred --CccHHHH----HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEecccc----------------
Confidence 0111111 12234567788888999999984 2 33455677889999885432210
Q ss_pred CCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-Hc-C
Q 012080 165 RPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR-QY-N 242 (471)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~ 242 (471)
. .. . +........+.. .....+.+++.+-.. .+.+.. .. +
T Consensus 122 ------------~-~~-----~--------------~~~~~~~~~~~~-~~~~~d~ii~~s~~~-----~~~l~~~g~~~ 163 (384)
T 1vgv_A 122 ------------T-GD-----L--------------YSPWPEEANRTL-TGHLAMYHFSPTETS-----RQNLLRENVAD 163 (384)
T ss_dssp ------------C-SC-----T--------------TSSTTHHHHHHH-HHTTCSEEEESSHHH-----HHHHHHTTCCG
T ss_pred ------------c-cc-----c--------------cCCCchHhhHHH-HHhhccEEEcCcHHH-----HHHHHHcCCCh
Confidence 0 00 0 000001111111 013366666654321 122221 11 1
Q ss_pred CCeEEeccCCCCCCCCCCh---------hhhhhccC-CCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCCceE
Q 012080 243 KPVFLTGPVLHEPAKTPSE---------ERWDKWLG-GFERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGLCFL 307 (471)
Q Consensus 243 ~~v~~vGp~~~~~~~~~~~---------~~l~~~l~-~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~~ 307 (471)
.++..+|....+......+ .++.+.+. -.++++.++++.|......+ .+..++++++. .+.+++
T Consensus 164 ~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~k-g~~~li~a~~~l~~~~~~~~l~ 242 (384)
T 1vgv_A 164 SRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGR-GFEEICHALADIATTHQDIQIV 242 (384)
T ss_dssp GGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCH-HHHHHHHHHHHHHHHCTTEEEE
T ss_pred hhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccch-HHHHHHHHHHHHHhhCCCeEEE
Confidence 2466776321110000000 12333322 11234578888887653222 34445555432 234555
Q ss_pred EEeCCCCCCCcccccCChhHHHhhC-CCcEEeccccCc---hhhhcccCcceeeccCCcchHHHHHhhCCcEEecccccc
Q 012080 308 IALKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGD 383 (471)
Q Consensus 308 ~~~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~D 383 (471)
+..+.+ . . .-+.+.+... .+++.+.+++++ .++++.+++ ||+..| +.++||+++|+|+|+.+..++
T Consensus 243 i~~g~~--~-~----~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~ 312 (384)
T 1vgv_A 243 YPVHLN--P-N----VREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTE 312 (384)
T ss_dssp EECCBC--H-H----HHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCS
T ss_pred EEcCCC--H-H----HHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCC
Confidence 533311 0 0 1112222112 358888666664 567889999 998875 458899999999999987544
Q ss_pred chhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 384 QILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 384 Q~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
.. .+. +.|.|..++ .+.++|.++|.++++|+ +..+.+.+++ ..+.+....++.++.+.+.+.++
T Consensus 313 ~~----e~v-~~g~g~lv~------~d~~~la~~i~~ll~d~-~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 313 RP----EAV-TAGTVRLVG------TDKQRIVEEVTRLLKDE-NEYQAMSRAH----NPYGDGQACSRILEALKNNRISL 376 (384)
T ss_dssp CH----HHH-HHTSEEEEC------SSHHHHHHHHHHHHHCH-HHHHHHHSSC----CTTCCSCHHHHHHHHHHHTCCCC
T ss_pred cc----hhh-hCCceEEeC------CCHHHHHHHHHHHHhCh-HHHhhhhhcc----CCCcCCCHHHHHHHHHHHHHHhh
Confidence 33 345 567888886 27899999999999885 2222222222 12222233445556666666777
Q ss_pred ccccccC
Q 012080 464 VSCEVHT 470 (471)
Q Consensus 464 ~~~~~~~ 470 (471)
.+..+|+
T Consensus 377 ~~~~~~~ 383 (384)
T 1vgv_A 377 GSHHHHH 383 (384)
T ss_dssp -------
T ss_pred ccccccC
Confidence 7655553
No 28
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.41 E-value=5.5e-11 Score=116.92 Aligned_cols=347 Identities=8% Similarity=-0.019 Sum_probs=192.5
Q ss_pred CCCCeEEEecC--C--CccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPW--F--AVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~--~--~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.+++||++++. + ..|.-..+..+++.| +||+|++++............ ...++.+..++.. . .
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~------~ 68 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYD-KTLDYEVIRWPRS----V------M 68 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHH-TTCSSEEEEESSS----S------C
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhc-cccceEEEEcccc----c------c
Confidence 35679999853 2 457888999999999 799999999887643111110 1113777776521 0 0
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCC
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKD 164 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~ 164 (471)
.. .. .....+.+++++.+||+|++. . ......+++.+++|.+++....... ..
T Consensus 69 --~~--~~--------~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------~~------ 124 (394)
T 3okp_A 69 --LP--TP--------TTAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEV------GW------ 124 (394)
T ss_dssp --CS--CH--------HHHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHH------HH------
T ss_pred --cc--ch--------hhHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchh------hh------
Confidence 00 00 234467778888899999987 3 4445567888999855433221100 00
Q ss_pred CCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHc--C
Q 012080 165 RPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQY--N 242 (471)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~--~ 242 (471)
. .......... ......+.+++.+-. ..+.+...+ +
T Consensus 125 ------------~----------------------~~~~~~~~~~---~~~~~~d~ii~~s~~-----~~~~~~~~~~~~ 162 (394)
T 3okp_A 125 ------------S----------------------MLPGSRQSLR---KIGTEVDVLTYISQY-----TLRRFKSAFGSH 162 (394)
T ss_dssp ------------T----------------------TSHHHHHHHH---HHHHHCSEEEESCHH-----HHHHHHHHHCSS
T ss_pred ------------h----------------------hcchhhHHHH---HHHHhCCEEEEcCHH-----HHHHHHHhcCCC
Confidence 0 0000011111 124567778776653 233333333 2
Q ss_pred CCeEEeccCCCCCCCCC-Ch---hhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHh--cCCceEEEeCCCCC
Q 012080 243 KPVFLTGPVLHEPAKTP-SE---ERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLEL--TGLCFLIALKPPTG 315 (471)
Q Consensus 243 ~~v~~vGp~~~~~~~~~-~~---~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~ 315 (471)
.++..+..-.....-.. .+ .++.+.+.-. ++..+++..|+... ...+.+.+.+..+.. .+.+++++ +.+..
T Consensus 163 ~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~ 240 (394)
T 3okp_A 163 PTFEHLPSGVDVKRFTPATPEDKSATRKKLGFT-DTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIV-GSGRY 240 (394)
T ss_dssp SEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCC-TTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEE-CCCTT
T ss_pred CCeEEecCCcCHHHcCCCCchhhHHHHHhcCCC-cCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEE-cCchH
Confidence 35666664332211111 11 2233333222 23367777888743 233444333333322 24555544 32211
Q ss_pred CCcccccCChhHHHhh--CCCcEEeccccCchh---hhcccCcceeec-----------cCCcchHHHHHhhCCcEEecc
Q 012080 316 ASTVEEAFPDGFAERT--KGRGVVCGEWVEQMP---ILEHSSVGCFVS-----------HCGFGSMWESLMSDCQIVLVP 379 (471)
Q Consensus 316 ~~~~~~~~p~~~~~~~--~~~nv~~~~~~pq~~---lL~~~~v~~~It-----------HgG~~s~~Eal~~GvP~v~~P 379 (471)
. +.+.... -.+++.+.+|+|+.+ ++..+++ +|. -|..++++||+++|+|+|+.+
T Consensus 241 ~--------~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~ 310 (394)
T 3okp_A 241 E--------STLRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGT 310 (394)
T ss_dssp H--------HHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECS
T ss_pred H--------HHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCCEEEeC
Confidence 1 1111111 135889999997654 6788888 665 555679999999999999976
Q ss_pred ccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHH
Q 012080 380 HLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQN 459 (471)
Q Consensus 380 ~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~ 459 (471)
.. .....+. . |.|..++. -+.+++.++|.++++|+ +..+.+.+++++..+. .-.....++.+.+.
T Consensus 311 ~~----~~~e~i~-~-~~g~~~~~-----~d~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~ 375 (394)
T 3okp_A 311 SG----GAPETVT-P-ATGLVVEG-----SDVDKLSELLIELLDDP-IRRAAMGAAGRAHVEA---EWSWEIMGERLTNI 375 (394)
T ss_dssp ST----TGGGGCC-T-TTEEECCT-----TCHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHH---HTBHHHHHHHHHHH
T ss_pred CC----ChHHHHh-c-CCceEeCC-----CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHH---hCCHHHHHHHHHHH
Confidence 42 2233333 3 37877775 57899999999999875 4444455555544332 22345556777777
Q ss_pred HHhcc
Q 012080 460 MRGLV 464 (471)
Q Consensus 460 ~~~~~ 464 (471)
+.++.
T Consensus 376 ~~~~~ 380 (394)
T 3okp_A 376 LQSEP 380 (394)
T ss_dssp HHSCC
T ss_pred HHHhc
Confidence 76665
No 29
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.38 E-value=4.5e-10 Score=111.95 Aligned_cols=387 Identities=12% Similarity=0.044 Sum_probs=198.0
Q ss_pred CCCeEEEecC-----CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc---------------CCCCCCCeEEEEe
Q 012080 13 SAFPIVMLPW-----FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH---------------FNLHPDLITLHPL 72 (471)
Q Consensus 13 ~~~~il~~~~-----~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~---------------~~~~~~~~~~~~i 72 (471)
++|||++++. ...|--.-+..||++|+++||+|+++++......-.. ......+++++.+
T Consensus 1 r~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~ 80 (439)
T 3fro_A 1 RHMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRI 80 (439)
T ss_dssp CCCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEE
T ss_pred CceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEe
Confidence 4679999863 2356667789999999999999999996543221000 0001123666666
Q ss_pred cCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHH-HhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchh
Q 012080 73 TVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVI-KAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
+.. ..............+...+..........+..++ +..+||+|.+. . ...+..+++..++|+|.......
T Consensus 81 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~v~~~h~~~ 156 (439)
T 3fro_A 81 GGG----LLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDWHTVFAGALIKKYFKIPAVFTIHRLN 156 (439)
T ss_dssp ESG----GGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESGGGHHHHHHHHHHHCCCEEEEESCCC
T ss_pred cch----hccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecchhhhhhHHHHhhccCCCEEEEecccc
Confidence 520 0000000000000101111111222222333333 24599999988 3 33355677789999987655432
Q ss_pred HHHHHhhccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccc
Q 012080 149 ASIATALVPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHE 228 (471)
Q Consensus 149 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 228 (471)
. ..++... +....+..+. .+. ...+.. ..+..++.+++.+-..
T Consensus 157 ~---------------------------~~~~~~~--~~~~~~~~~~----~~~-~~~~~~---~~~~~ad~ii~~S~~~ 199 (439)
T 3fro_A 157 K---------------------------SKLPAFY--FHEAGLSELA----PYP-DIDPEH---TGGYIADIVTTVSRGY 199 (439)
T ss_dssp C---------------------------CCEEHHH--HHHTTCGGGC----CSS-EECHHH---HHHHHCSEEEESCHHH
T ss_pred c---------------------------ccCchHH--hCcccccccc----ccc-eeeHhh---hhhhhccEEEecCHHH
Confidence 0 0011000 0000000000 000 011111 1244577777766543
Q ss_pred cchhHHHHHHHHcCCCeEEeccCCCCCCCCC---------ChhhhhhccCCCCCCcEEEEEeCccc-c-CCHHHHHHHHH
Q 012080 229 IEGDLCEYIARQYNKPVFLTGPVLHEPAKTP---------SEERWDKWLGGFERSSVVYCAFGSQI-I-LEKKQFQELLL 297 (471)
Q Consensus 229 l~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~---------~~~~l~~~l~~~~~~~vV~vs~Gs~~-~-~~~~~~~~~~~ 297 (471)
.+. ....+ ...+.++..+..-.....-.. ....+.+.+.-.+ + .+++..|+.. . ...+.+.+.+.
T Consensus 200 ~~~-~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~G~~~~~~Kg~~~li~a~~ 275 (439)
T 3fro_A 200 LID-EWGFF-RNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGMDE-G-VTFMFIGRFDRGQKGVDVLLKAIE 275 (439)
T ss_dssp HHH-THHHH-GGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTCCS-C-EEEEEECCSSCTTBCHHHHHHHHH
T ss_pred HHH-Hhhhh-hhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCCCC-C-cEEEEEcccccccccHHHHHHHHH
Confidence 322 11111 123456666654332211000 1122333333232 3 7888889886 3 34455544444
Q ss_pred HHHh----cCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCch---hhhcccCcceeec----cCCcchHH
Q 012080 298 GLEL----TGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQM---PILEHSSVGCFVS----HCGFGSMW 366 (471)
Q Consensus 298 al~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~~~v~~~It----HgG~~s~~ 366 (471)
.+.. .+.+++++ |.+. ....+.+ ........ .++.+.+|+|+. +++..+++ +|. -|-.++++
T Consensus 276 ~l~~~~~~~~~~l~i~-G~g~--~~~~~~l-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~ 348 (439)
T 3fro_A 276 ILSSKKEFQEMRFIII-GKGD--PELEGWA-RSLEEKHG-NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVAL 348 (439)
T ss_dssp HHHTSGGGGGEEEEEE-CCCC--HHHHHHH-HHHHHHCT-TEEEECSCCCHHHHHHHHTTCSE--EEECBSCCSSCHHHH
T ss_pred HHHhcccCCCeEEEEE-cCCC--hhHHHHH-HHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCE--EEeCCCCCCccHHHH
Confidence 4433 33444443 3211 0000000 11112222 566678889885 46788888 652 23347999
Q ss_pred HHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhhhcC
Q 012080 367 ESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD-KESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 367 Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
||+++|+|+|+... ......+. -|.|..++. -+.+++.++|.++++ ++ +..+.+.+++++..+.
T Consensus 349 EAma~G~Pvi~s~~----~~~~e~~~--~~~g~~~~~-----~d~~~la~~i~~ll~~~~-~~~~~~~~~~~~~~~~--- 413 (439)
T 3fro_A 349 EAMCLGAIPIASAV----GGLRDIIT--NETGILVKA-----GDPGELANAILKALELSR-SDLSKFRENCKKRAMS--- 413 (439)
T ss_dssp HHHHTTCEEEEESS----THHHHHCC--TTTCEEECT-----TCHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHT---
T ss_pred HHHHCCCCeEEcCC----CCcceeEE--cCceEEeCC-----CCHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhh---
Confidence 99999999999753 34444443 368888886 578999999999998 64 5666777777666533
Q ss_pred CCchhHHHHHHHHHHHhccccc
Q 012080 446 PGFVSGYIDKFVQNMRGLVSCE 467 (471)
Q Consensus 446 ~~~~~~~i~~~~~~~~~~~~~~ 467 (471)
-.....++.+.+.+.++....
T Consensus 414 -~s~~~~~~~~~~~~~~~~~~~ 434 (439)
T 3fro_A 414 -FSWEKSAERYVKAYTGSIDRA 434 (439)
T ss_dssp -SCHHHHHHHHHHHHHTCSCCB
T ss_pred -CcHHHHHHHHHHHHHHHHHhh
Confidence 234556677777777766443
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.36 E-value=3.8e-11 Score=118.59 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=165.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchh----hhccCCCCCCCeEE-EEecCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQT----QLQHFNLHPDLITL-HPLTVPHVDGLPAGAE 85 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~----~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~ 85 (471)
+|+||+++. +++....-+..|.++|.++ |+++.++.+....+ ..+.++ ++. +.+. +..
T Consensus 26 ~~~kI~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~~tG~h~~m~~~~~~~~~-----i~~~~~l~------v~~--- 90 (403)
T 3ot5_A 26 AKIKVMSIF-GTRPEAIKMAPLVLALEKEPETFESTVVITAQHREMLDQVLEIFD-----IKPDIDLD------IMK--- 90 (403)
T ss_dssp CCEEEEEEE-CSHHHHHHHHHHHHHHHTCTTTEEEEEEECC-----CHHHHHHTT-----CCCSEECC------CCC---
T ss_pred ccceEEEEE-ecChhHHHHHHHHHHHHhCCCCCcEEEEEecCcHHHHHHHHHhcC-----CCCCcccc------cCC---
Confidence 446888876 5565666668899999988 68887776664321 122222 210 1111 000
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc--C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCC
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD--I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNV 161 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~ 161 (471)
..+ ... .........+.+++++.+||+|++- . ..++..+|..+|||++.+....-
T Consensus 91 -~~~---~~~----~~~~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglr------------- 149 (403)
T 3ot5_A 91 -KGQ---TLA----EITSRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLR------------- 149 (403)
T ss_dssp --CC---CHH----HHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCC-------------
T ss_pred -CCC---CHH----HHHHHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-------------
Confidence 001 111 1133456678889999999998873 2 34456788999999875432110
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCc-hhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-
Q 012080 162 PKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEG-MSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR- 239 (471)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~- 239 (471)
.+. .+... ....+++.. ..++.+++.+-. ..+.+..
T Consensus 150 ----------------s~~-------------------~~~~~p~~~~r~~~~--~~a~~~~~~se~-----~~~~l~~~ 187 (403)
T 3ot5_A 150 ----------------TWN-------------------KYSPFPEEMNRQLTG--VMADIHFSPTKQ-----AKENLLAE 187 (403)
T ss_dssp ----------------CSC-------------------TTSSTTHHHHHHHHH--HHCSEEEESSHH-----HHHHHHHT
T ss_pred ----------------ccc-------------------cccCCcHHHHHHHHH--HhcCEEECCCHH-----HHHHHHHc
Confidence 000 00000 011111111 124555554332 1222222
Q ss_pred Hc-CCCeEEeccC-CCC---CCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCCceEEE
Q 012080 240 QY-NKPVFLTGPV-LHE---PAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGLCFLIA 309 (471)
Q Consensus 240 ~~-~~~v~~vGp~-~~~---~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~~~~ 309 (471)
.. +.+++++|.. ... ........+..+.+ +++++++++.|....... .+..++++++. .+.++++.
T Consensus 188 Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~~~-~l~~ll~a~~~l~~~~~~~~~v~~ 263 (403)
T 3ot5_A 188 GKDPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENLGE-PMQGMFEAVREIVESREDTELVYP 263 (403)
T ss_dssp TCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHHTT-HHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCcccccCc-HHHHHHHHHHHHHHhCCCceEEEe
Confidence 12 2358888842 211 00101111222223 235577777664322111 23455555432 34566665
Q ss_pred eCCCCCCCcccccCChhHHHhh-CCCcEEeccccCc---hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccch
Q 012080 310 LKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQI 385 (471)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~ 385 (471)
.+++. . +-+.+.... ..+++++.+++++ ..+++.+++ +|+-.|.. +.||.++|+|+|+.|-..+++
T Consensus 264 ~~~~~---~----~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~--vv~~SGg~-~~EA~a~g~PvV~~~~~~~~~ 333 (403)
T 3ot5_A 264 MHLNP---A----VREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYL--VFTDSGGV-QEEAPGMGVPVLVLRDTTERP 333 (403)
T ss_dssp CCSCH---H----HHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEE--EEECCHHH-HHHGGGTTCCEEECCSSCSCH
T ss_pred cCCCH---H----HHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCccH-HHHHHHhCCCEEEecCCCcch
Confidence 44210 0 111111111 2368888888864 467888998 99887533 379999999999997666665
Q ss_pred hhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 386 LNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 386 ~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
. +. +.|.|+.+. .+.++|.++|.++++|+
T Consensus 334 e----~v-~~g~~~lv~------~d~~~l~~ai~~ll~~~ 362 (403)
T 3ot5_A 334 E----GI-EAGTLKLIG------TNKENLIKEALDLLDNK 362 (403)
T ss_dssp H----HH-HHTSEEECC------SCHHHHHHHHHHHHHCH
T ss_pred h----he-eCCcEEEcC------CCHHHHHHHHHHHHcCH
Confidence 4 45 678887776 47899999999999886
No 31
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.36 E-value=4.2e-10 Score=111.10 Aligned_cols=344 Identities=11% Similarity=0.046 Sum_probs=182.1
Q ss_pred CCCCeEEEecC---CC-ccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPW---FA-VGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~---~~-~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.+|+||++++. +. .|.-..+..+++.|.++||+|++++............... .+++.++. . ...
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~--~~~~~~~~--------~-~~~ 86 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSG--GKAVPIPY--------N-GSV 86 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEEC--CCCC-----------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccC--CcEEeccc--------c-CCc
Confidence 56789999853 22 5677889999999999999999999876532111100000 01111110 0 000
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCC
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKD 164 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~ 164 (471)
..... .......+.+++++.+||+|++. . ...+..+++..++|++.......
T Consensus 87 ~~~~~---------~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~---------------- 141 (406)
T 2gek_A 87 ARLRF---------GPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTST---------------- 141 (406)
T ss_dssp ----C---------CHHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCC----------------
T ss_pred ccccc---------cHHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcc----------------
Confidence 00000 00123456677888899999988 4 33355667778999987654311
Q ss_pred CCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcCC-
Q 012080 165 RPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYNK- 243 (471)
Q Consensus 165 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~- 243 (471)
+... . ...+ ...+. ..+...+.+++.+-. ..+.+...++.
T Consensus 142 ---------------~~~~--~----~~~~----------~~~~~---~~~~~~d~ii~~s~~-----~~~~~~~~~~~~ 182 (406)
T 2gek_A 142 ---------------TKSL--T----LSVF----------QGILR---PYHEKIIGRIAVSDL-----ARRWQMEALGSD 182 (406)
T ss_dssp ---------------CSHH--H----HHHH----------HSTTH---HHHTTCSEEEESSHH-----HHHHHHHHHSSC
T ss_pred ---------------hhhh--h----HHHH----------HHHHH---HHHhhCCEEEECCHH-----HHHHHHHhcCCC
Confidence 0000 0 0000 00011 224567777776643 22333333443
Q ss_pred CeEEeccCCCCCCCCCChhhhhhccC--CCCCCcEEEEEeCcc-cc-CCHHHHHHHHHHHHh--cCCceEEEeCCCCCCC
Q 012080 244 PVFLTGPVLHEPAKTPSEERWDKWLG--GFERSSVVYCAFGSQ-II-LEKKQFQELLLGLEL--TGLCFLIALKPPTGAS 317 (471)
Q Consensus 244 ~v~~vGp~~~~~~~~~~~~~l~~~l~--~~~~~~vV~vs~Gs~-~~-~~~~~~~~~~~al~~--~~~~~~~~~~~~~~~~ 317 (471)
++ .+...... .....--. ..++...+++..|+. .. ...+.+.+.+..+.. .+.+++++ +.+..
T Consensus 183 ~~-vi~~~v~~-------~~~~~~~~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~~~~-- 251 (406)
T 2gek_A 183 AV-EIPNGVDV-------ASFADAPLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIV-GRGDE-- 251 (406)
T ss_dssp EE-ECCCCBCH-------HHHHTCCCCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEE-SCSCH--
T ss_pred cE-EecCCCCh-------hhcCCCchhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEE-cCCcH--
Confidence 34 44432211 00000000 000012567778887 43 333444333333322 24444443 42211
Q ss_pred cccccCChhHHHhhC--CCcEEeccccCch---hhhcccCcceeec----cCCc-chHHHHHhhCCcEEeccccccchhh
Q 012080 318 TVEEAFPDGFAERTK--GRGVVCGEWVEQM---PILEHSSVGCFVS----HCGF-GSMWESLMSDCQIVLVPHLGDQILN 387 (471)
Q Consensus 318 ~~~~~~p~~~~~~~~--~~nv~~~~~~pq~---~lL~~~~v~~~It----HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~n 387 (471)
+.+.+... .+++.+.+|+|+. +++..+++ +|. +.|+ ++++||+++|+|+|+.+. ...
T Consensus 252 -------~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~----~~~ 318 (406)
T 2gek_A 252 -------DELREQAGDLAGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL----DAF 318 (406)
T ss_dssp -------HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC----HHH
T ss_pred -------HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC----CcH
Confidence 22222111 4688999999874 68888998 553 4444 489999999999999764 455
Q ss_pred HHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhccc
Q 012080 388 TRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVS 465 (471)
Q Consensus 388 a~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 465 (471)
...+. +-+.|..++. -+.+++.++|.++++|+ +..+.+.+++++. .+ .-.....++.+.+.+.++..
T Consensus 319 ~e~i~-~~~~g~~~~~-----~d~~~l~~~i~~l~~~~-~~~~~~~~~~~~~---~~-~~s~~~~~~~~~~~~~~~~~ 385 (406)
T 2gek_A 319 RRVLA-DGDAGRLVPV-----DDADGMAAALIGILEDD-QLRAGYVARASER---VH-RYDWSVVSAQIMRVYETVSG 385 (406)
T ss_dssp HHHHT-TTTSSEECCT-----TCHHHHHHHHHHHHHCH-HHHHHHHHHHHHH---GG-GGBHHHHHHHHHHHHHHHCC
T ss_pred HHHhc-CCCceEEeCC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHH---HH-hCCHHHHHHHHHHHHHHHHh
Confidence 66666 6678888876 57889999999999885 2333344444433 33 33344555666655555543
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.33 E-value=2.1e-11 Score=120.30 Aligned_cols=315 Identities=9% Similarity=0.065 Sum_probs=168.3
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchh----hhccCCCCCCCeE-EEEecCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQT----QLQHFNLHPDLIT-LHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~----~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~ 85 (471)
.+|+||+++. +++....-+.+|.++|.++ |+++.++.+....+ ..+.++ ++ -+.+. +.
T Consensus 23 ~~m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~~~~-----i~~~~~l~------~~---- 86 (396)
T 3dzc_A 23 NAMKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLELFS-----ITPDFDLN------IM---- 86 (396)
T ss_dssp -CCEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHHHTT-----CCCSEECC------CC----
T ss_pred CCCCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHhcC-----CCCceeee------cC----
Confidence 4567888876 5566677778899999887 78987666655432 112223 21 01111 00
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc--C-c-cchHHHHHHcCCceEEEecchhHHHHHhhccccCC
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD--I-A-YWMATISKSLSIKCIKYNVVCAASIATALVPARNV 161 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~-~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~ 161 (471)
... ..... ........+.+++++.+||+|++- . + ..+..+|..+|||++.+....-
T Consensus 87 ~~~---~~~~~----~~~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r------------- 146 (396)
T 3dzc_A 87 EPG---QTLNG----VTSKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR------------- 146 (396)
T ss_dssp CTT---CCHHH----HHHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-------------
T ss_pred CCC---CCHHH----HHHHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-------------
Confidence 000 01111 133456678889999999998873 3 3 4456788999999875432110
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-H
Q 012080 162 PKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR-Q 240 (471)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~ 240 (471)
.+. .+........|.. ....++.+++.+-. ..+.+.. .
T Consensus 147 ----------------s~~-------------------~~~~~~~~~~r~~-~~~~a~~~~~~se~-----~~~~l~~~G 185 (396)
T 3dzc_A 147 ----------------TGN-------------------IYSPWPEEGNRKL-TAALTQYHFAPTDT-----SRANLLQEN 185 (396)
T ss_dssp ----------------CSC-------------------TTSSTTHHHHHHH-HHHTCSEEEESSHH-----HHHHHHHTT
T ss_pred ----------------ccc-------------------cccCCcHHHHHHH-HHHhcCEEECCCHH-----HHHHHHHcC
Confidence 000 0000001112211 01235556654432 1222222 1
Q ss_pred c-CCCeEEecc-CCCCCCCCCC--------hhhhhhccCC-CCCCcEEEEEeCccccCCHHHHHHHHHHHHh-----cCC
Q 012080 241 Y-NKPVFLTGP-VLHEPAKTPS--------EERWDKWLGG-FERSSVVYCAFGSQIILEKKQFQELLLGLEL-----TGL 304 (471)
Q Consensus 241 ~-~~~v~~vGp-~~~~~~~~~~--------~~~l~~~l~~-~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~-----~~~ 304 (471)
. +.+++++|. .......... ..++.+.+.. .+++++|+++.+-...... .+..+++|++. .+.
T Consensus 186 ~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~-~~~~ll~A~~~l~~~~~~~ 264 (396)
T 3dzc_A 186 YNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGG-GFERICQALITTAEQHPEC 264 (396)
T ss_dssp CCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTT-HHHHHHHHHHHHHHHCTTE
T ss_pred CCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchh-HHHHHHHHHHHHHHhCCCc
Confidence 2 235888884 2211000000 0223333331 1234577776532222122 24556666543 345
Q ss_pred ceEEEeCCCCCCCcccccCChhHHHhh-CCCcEEeccccC---chhhhcccCcceeeccCCcchHHHHHhhCCcEEeccc
Q 012080 305 CFLIALKPPTGASTVEEAFPDGFAERT-KGRGVVCGEWVE---QMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPH 380 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~nv~~~~~~p---q~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~ 380 (471)
++++..+.+ . . +-+.+.+.. ..+++++.++++ ...+++.+++ ||+-.| |.+.||.++|+|+|+..-
T Consensus 265 ~~v~~~g~~--~-~----~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~ 334 (396)
T 3dzc_A 265 QILYPVHLN--P-N----VREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRE 334 (396)
T ss_dssp EEEEECCBC--H-H----HHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCS
T ss_pred eEEEEeCCC--h-H----HHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccC
Confidence 566654421 0 0 111122211 235788877775 3468888998 999887 666899999999999865
Q ss_pred cccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 381 LGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 381 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
..+++ .+. +.|.++.+. .+.++|.++|.++++|+
T Consensus 335 ~~~~~----e~v-~~G~~~lv~------~d~~~l~~ai~~ll~d~ 368 (396)
T 3dzc_A 335 TTERP----EAV-AAGTVKLVG------TNQQQICDALSLLLTDP 368 (396)
T ss_dssp SCSCH----HHH-HHTSEEECT------TCHHHHHHHHHHHHHCH
T ss_pred CCcch----HHH-HcCceEEcC------CCHHHHHHHHHHHHcCH
Confidence 55553 245 668776554 36899999999999886
No 33
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.33 E-value=2.3e-09 Score=105.49 Aligned_cols=352 Identities=11% Similarity=0.026 Sum_probs=183.4
Q ss_pred CCeEEEecCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCh
Q 012080 14 AFPIVMLPWFAV-GHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPM 92 (471)
Q Consensus 14 ~~~il~~~~~~~-GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (471)
++++....+|.. |.-.....+|++|.++||+|++++........ ....++.+..++... .+ .......
T Consensus 15 ~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~----~~~~~i~~~~~~~~~---~~----~~~~~~~ 83 (394)
T 2jjm_A 15 KLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFRLN----KVYPNIYFHEVTVNQ---YS----VFQYPPY 83 (394)
T ss_dssp CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC--------CCCTTEEEECCCCC-----------CCSCCH
T ss_pred eeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCccc----ccCCceEEEeccccc---cc----ccccccc
Confidence 356777666554 57788899999999999999999986432111 112246666554210 00 0000010
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccc--hHHHHHH-c--CCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 93 SSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYW--MATISKS-L--SIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~--~~~~A~~-~--giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
. -.....+.+++++.+||+|++. ..+. ...++.. + ++|++......... .
T Consensus 84 ---~------~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~----------- 139 (394)
T 2jjm_A 84 ---D------LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT----V----------- 139 (394)
T ss_dssp ---H------HHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH----T-----------
T ss_pred ---c------HHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc----c-----------
Confidence 0 0123456677788899999998 3322 2334443 3 59988655442211 0
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC--CC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN--KP 244 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~ 244 (471)
.+.. .....+. + ..+...+.+++.+-. ..+.+...++ .+
T Consensus 140 ----------~~~~---------------------~~~~~~~-~--~~~~~ad~ii~~s~~-----~~~~~~~~~~~~~~ 180 (394)
T 2jjm_A 140 ----------LGSD---------------------PSLNNLI-R--FGIEQSDVVTAVSHS-----LINETHELVKPNKD 180 (394)
T ss_dssp ----------TTTC---------------------TTTHHHH-H--HHHHHSSEEEESCHH-----HHHHHHHHTCCSSC
T ss_pred ----------cCCC---------------------HHHHHHH-H--HHHhhCCEEEECCHH-----HHHHHHHhhCCccc
Confidence 0000 0001111 1 124557777776653 2333444333 36
Q ss_pred eEEeccCCCCCC-CCCChhhhhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHH-hcCCceEEEeCCCCCCCcccc
Q 012080 245 VFLTGPVLHEPA-KTPSEERWDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLE-LTGLCFLIALKPPTGASTVEE 321 (471)
Q Consensus 245 v~~vGp~~~~~~-~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~ 321 (471)
+..++.-..... ......++.+.+... +...+++..|.... ...+.+.+.+..+. ..+.++++ ++.+...
T Consensus 181 ~~vi~ngv~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i-~G~g~~~----- 253 (394)
T 2jjm_A 181 IQTVYNFIDERVYFKRDMTQLKKEYGIS-ESEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLL-VGDGPEF----- 253 (394)
T ss_dssp EEECCCCCCTTTCCCCCCHHHHHHTTCC----CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEE-ECCCTTH-----
T ss_pred EEEecCCccHHhcCCcchHHHHHHcCCC-CCCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEE-ECCchHH-----
Confidence 777764332211 111112232323211 12356667788754 23333333333332 23444444 4422111
Q ss_pred cCChhHHHh---hC-CCcEEeccccCc-hhhhcccCcceee----ccCCcchHHHHHhhCCcEEeccccccchhhHHHHH
Q 012080 322 AFPDGFAER---TK-GRGVVCGEWVEQ-MPILEHSSVGCFV----SHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLA 392 (471)
Q Consensus 322 ~~p~~~~~~---~~-~~nv~~~~~~pq-~~lL~~~~v~~~I----tHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~ 392 (471)
+.+.+. .+ .++|.+.++..+ .+++..+++ +| .-|..++++||+++|+|+|+.+.. .....+.
T Consensus 254 ---~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~----~~~e~v~ 324 (394)
T 2jjm_A 254 ---CTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG----GIPEVIQ 324 (394)
T ss_dssp ---HHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT----TSTTTCC
T ss_pred ---HHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC----ChHHHhh
Confidence 112211 11 356777776554 468888998 77 556667999999999999998742 2333344
Q ss_pred HhhcceEEeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhccc
Q 012080 393 EELKVAVEVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVS 465 (471)
Q Consensus 393 ~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 465 (471)
+-+.|..++. -+.+++.++|.++++|+ +..+.+.+++++.. .+.-..++.++.+++.+.+...
T Consensus 325 -~~~~g~~~~~-----~d~~~la~~i~~l~~~~-~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~ 387 (394)
T 2jjm_A 325 -HGDTGYLCEV-----GDTTGVADQAIQLLKDE-ELHRNMGERARESV---YEQFRSEKIVSQYETIYYDVLR 387 (394)
T ss_dssp -BTTTEEEECT-----TCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH---HHHSCHHHHHHHHHHHHHHTC-
T ss_pred -cCCceEEeCC-----CCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHh
Confidence 5567888875 57899999999999875 33444555555443 2222344555666666655543
No 34
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.30 E-value=5.2e-10 Score=113.93 Aligned_cols=363 Identities=13% Similarity=0.035 Sum_probs=183.2
Q ss_pred CCCCeEEEecCC---------------CccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh-------hccCCCCCCCeEE
Q 012080 12 SSAFPIVMLPWF---------------AVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ-------LQHFNLHPDLITL 69 (471)
Q Consensus 12 ~~~~~il~~~~~---------------~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~-------~~~~~~~~~~~~~ 69 (471)
.+++||++++.. ..|.-..+..+|+.|.++||+|++++....... .+... ...++++
T Consensus 5 ~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~gv~v 83 (499)
T 2r60_A 5 TRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQ-ETNKVRI 83 (499)
T ss_dssp --CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECT-TCSSEEE
T ss_pred cccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhcc-CCCCeEE
Confidence 445799999642 356788899999999999999999986543211 11110 0224788
Q ss_pred EEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEEc-C--ccchHHHHHHcCCceEEEe
Q 012080 70 HPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKA--AKPRLLFYD-I--AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 70 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~~ 144 (471)
+.++....... . .......+. .....+..++++ .+||+|.+. . ...+..+++.+++|+|...
T Consensus 84 ~~~~~~~~~~~-----~----~~~~~~~~~----~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~~~ 150 (499)
T 2r60_A 84 VRIPFGGDKFL-----P----KEELWPYLH----EYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTFTG 150 (499)
T ss_dssp EEECCSCSSCC-----C----GGGCGGGHH----HHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEecCCCcCCc-----C----HHHHHHHHH----HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEEEc
Confidence 77763211000 0 001111111 112345566666 589999988 3 3445557788999998665
Q ss_pred cchhHHHHHhhccccCCCCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCC-chhHHHHHHhhhccCCEEEE
Q 012080 145 VVCAASIATALVPARNVPKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGE-GMSFYERITTSLKESDAISI 223 (471)
Q Consensus 145 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 223 (471)
........ ..... .+.+. +.+. ..+.. ......+ ..+...+.+++
T Consensus 151 H~~~~~~~-~~~~~------------------~~~~~----------~~~~---~~~~~~~~~~~~~--~~~~~ad~vi~ 196 (499)
T 2r60_A 151 HSLGAQKM-EKLNV------------------NTSNF----------KEMD---ERFKFHRRIIAER--LTMSYADKIIV 196 (499)
T ss_dssp SSCHHHHH-HTTCC------------------CSTTS----------HHHH---HHHCHHHHHHHHH--HHHHHCSEEEE
T ss_pred cCcccccc-hhhcc------------------CCCCc----------chhh---hhHHHHHHHHHHH--HHHhcCCEEEE
Confidence 54332210 00000 00000 0000 00000 0001111 22456788887
Q ss_pred cCccccchhHHHHHHHH--cC--------CCeEEeccCCCCCC-CCCCh----hhhhhccC----CCCCCcEEEEEeCcc
Q 012080 224 RTCHEIEGDLCEYIARQ--YN--------KPVFLTGPVLHEPA-KTPSE----ERWDKWLG----GFERSSVVYCAFGSQ 284 (471)
Q Consensus 224 ~~~~~l~~~~~~~~~~~--~~--------~~v~~vGp~~~~~~-~~~~~----~~l~~~l~----~~~~~~vV~vs~Gs~ 284 (471)
.+-.. .+.+... ++ .++..+..-..... ..... ..+.+-+. ..++...+++..|..
T Consensus 197 ~S~~~-----~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGrl 271 (499)
T 2r60_A 197 STSQE-----RFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSRL 271 (499)
T ss_dssp SSHHH-----HHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSCC
T ss_pred CCHHH-----HHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeecC
Confidence 66542 2222222 21 24555543222111 00000 12222211 001123567778877
Q ss_pred ccCCHHHHHHHHHHHHhc-----CCceEEEeCCCCCC----Ccc-ccc--CChhHHH---hhC-CCcEEeccccCch---
Q 012080 285 IILEKKQFQELLLGLELT-----GLCFLIALKPPTGA----STV-EEA--FPDGFAE---RTK-GRGVVCGEWVEQM--- 345 (471)
Q Consensus 285 ~~~~~~~~~~~~~al~~~-----~~~~~~~~~~~~~~----~~~-~~~--~p~~~~~---~~~-~~nv~~~~~~pq~--- 345 (471)
.. ...+..++++++.. +...++.++...+. ..+ ... .-+.+.. +.+ .++|.+.+++|+.
T Consensus 272 ~~--~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~ 349 (499)
T 2r60_A 272 DQ--KKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELA 349 (499)
T ss_dssp CG--GGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHH
T ss_pred cc--ccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHH
Confidence 43 22344455555433 12245555531111 000 000 0111221 112 4678999999765
Q ss_pred hhhccc----Ccceeec---c-CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHH
Q 012080 346 PILEHS----SVGCFVS---H-CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKA 417 (471)
Q Consensus 346 ~lL~~~----~v~~~It---H-gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~a 417 (471)
.++..+ ++ +|. + |-..+++||+++|+|+|+... ......+. .-+.|..++. -+.+++.++
T Consensus 350 ~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~-~~~~g~l~~~-----~d~~~la~~ 417 (499)
T 2r60_A 350 GCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILD-GGKYGVLVDP-----EDPEDIARG 417 (499)
T ss_dssp HHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTG-GGTSSEEECT-----TCHHHHHHH
T ss_pred HHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhc-CCceEEEeCC-----CCHHHHHHH
Confidence 477788 88 663 2 334689999999999999763 34455555 5557888876 578899999
Q ss_pred HHHHhccCchhhHHHHHHHHHHHhh
Q 012080 418 IKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 418 i~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
|.++++|+ +..+.+.++|++..+.
T Consensus 418 i~~ll~~~-~~~~~~~~~a~~~~~~ 441 (499)
T 2r60_A 418 LLKAFESE-ETWSAYQEKGKQRVEE 441 (499)
T ss_dssp HHHHHSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCH-HHHHHHHHHHHHHHHH
Confidence 99999875 3344455555544433
No 35
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.20 E-value=4.1e-10 Score=109.89 Aligned_cols=331 Identities=13% Similarity=0.114 Sum_probs=175.6
Q ss_pred CeEEEecC---CCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPW---FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~~~---~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
|||++++. +..|.-..+..++++|.++||+|++++...... .+.+++++.++... .
T Consensus 1 MkIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-------~~~~~~v~~~~~~~--------------~ 59 (374)
T 2iw1_A 1 MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGD-------CPKAFELIQVPVKS--------------H 59 (374)
T ss_dssp -CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESEECSC-------CCTTCEEEECCCCC--------------S
T ss_pred CeEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecCCCCC-------CCCCcEEEEEccCc--------------c
Confidence 47888743 445778889999999999999999999764221 12236776665210 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCCCCccc
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRPVTEAE 171 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 171 (471)
..... .......+.+++++.+||+|++..... +.+................+..
T Consensus 60 ~~~~~-----~~~~~~~l~~~i~~~~~Dvv~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------------- 113 (374)
T 2iw1_A 60 TNHGR-----NAEYYAWVQNHLKEHPADRVVGFNKMP--------GLDVYFAADVCYAEKVAQEKGF------------- 113 (374)
T ss_dssp SHHHH-----HHHHHHHHHHHHHHSCCSEEEESSCCT--------TCSEEECCSCCHHHHHHHHCCH-------------
T ss_pred cchhh-----HHHHHHHHHHHHhccCCCEEEEecCCC--------Cceeeeccccccceeeeecccc-------------
Confidence 00111 112344677788889999999872111 1122211110000000000000
Q ss_pred cCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHHHcC---CCeEEe
Q 012080 172 LAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIARQYN---KPVFLT 248 (471)
Q Consensus 172 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~v~~v 248 (471)
.. .. ... ......+.+........+.+++.+-.. .+.+...++ .++..+
T Consensus 114 --------------~~-----~~---~~~-~~~~~~~~~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~~vi 165 (374)
T 2iw1_A 114 --------------LY-----RL---TSR-YRHYAAFERATFEQGKSTKLMMLTDKQ-----IADFQKHYQTEPERFQIL 165 (374)
T ss_dssp --------------HH-----HT---SHH-HHHHHHHHHHHHSTTCCCEEEESCHHH-----HHHHHHHHCCCGGGEEEC
T ss_pred --------------hh-----hh---cHH-HHHHHHHHHHHhhccCCcEEEEcCHHH-----HHHHHHHhCCChhheEEe
Confidence 00 00 000 000111122111112467777665432 233333322 245555
Q ss_pred ccCCCCCC-----CCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc------CCceEEEeCCCCCCC
Q 012080 249 GPVLHEPA-----KTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT------GLCFLIALKPPTGAS 317 (471)
Q Consensus 249 Gp~~~~~~-----~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~ 317 (471)
.+-..... ......++.+.+.-. +...+++..|+... ......++++++.. +.+ ++.++.+. .
T Consensus 166 ~ngv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~-l~i~G~g~--~ 239 (374)
T 2iw1_A 166 PPGIYPDRKYSEQIPNSREIYRQKNGIK-EQQNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTL-LFVVGQDK--P 239 (374)
T ss_dssp CCCCCGGGSGGGSCTTHHHHHHHHTTCC-TTCEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEE-EEEESSSC--C
T ss_pred cCCcCHHhcCcccchhHHHHHHHHhCCC-CCCeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceE-EEEEcCCC--H
Confidence 53222110 001112233333222 23467777887653 23344455555443 233 33444321 1
Q ss_pred cccccCChhHHHhhC-CCcEEeccccCc-hhhhcccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHH
Q 012080 318 TVEEAFPDGFAERTK-GRGVVCGEWVEQ-MPILEHSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLL 391 (471)
Q Consensus 318 ~~~~~~p~~~~~~~~-~~nv~~~~~~pq-~~lL~~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v 391 (471)
+.+ .......+ .+++.+.++..+ .+++..+++ +|. -|..++++||+++|+|+|+.+. ..+...+
T Consensus 240 ---~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i 309 (374)
T 2iw1_A 240 ---RKF-EALAEKLGVRSNVHFFSGRNDVSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYI 309 (374)
T ss_dssp ---HHH-HHHHHHHTCGGGEEEESCCSCHHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHH
T ss_pred ---HHH-HHHHHHcCCCCcEEECCCcccHHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhh
Confidence 101 11111222 357888887654 468888998 665 5667899999999999999764 3556677
Q ss_pred HHhhcceEEee-cccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhh
Q 012080 392 AEELKVAVEVE-REENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 392 ~~~~G~G~~l~-~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
+ +-+.|..++ . -+.+++.++|.++++|+ +..+.+.+++++..+..
T Consensus 310 ~-~~~~g~~~~~~-----~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~~ 355 (374)
T 2iw1_A 310 A-DANCGTVIAEP-----FSQEQLNEVLRKALTQS-PLRMAWAENARHYADTQ 355 (374)
T ss_dssp H-HHTCEEEECSS-----CCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHS
T ss_pred c-cCCceEEeCCC-----CCHHHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHh
Confidence 7 788898887 4 58899999999999875 55566777777776654
No 36
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.18 E-value=7.1e-10 Score=108.30 Aligned_cols=310 Identities=10% Similarity=0.087 Sum_probs=162.2
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC-C-CeEEEEeCCCchhhhc----cCCCCCCCeEE-EEecCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK-G-HKITILLPRKAQTQLQ----HFNLHPDLITL-HPLTVPHVDGLPAGAE 85 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r-G-h~Vt~~~~~~~~~~~~----~~~~~~~~~~~-~~i~~~~~~~~~~~~~ 85 (471)
+++||++++. +.++......++++|.++ | |+|+++++........ ..+ +.. ..++.. ..
T Consensus 7 ~~mkIl~v~~-~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~--- 72 (375)
T 3beo_A 7 ERLKVMTIFG-TRPEAIKMAPLVLELQKHPEKIESIVTVTAQHRQMLDQVLSIFG-----ITPDFDLNIM-----KD--- 72 (375)
T ss_dssp SCEEEEEEEC-SHHHHHHHHHHHHHHTTCTTTEEEEEEECCSSSHHHHHHHHHHT-----CCCSEECCCC-----CT---
T ss_pred cCceEEEEec-CcHHHHHHHHHHHHHHhCCCCCCeEEEEcCCCHHHHHHHHHHcC-----CCCccccccC-----CC---
Confidence 3479999973 467778888999999987 5 8887776654322111 122 211 122100 00
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C---ccchHHHHHHcCCceEEEecchhHHHHHhhccccCC
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I---AYWMATISKSLSIKCIKYNVVCAASIATALVPARNV 161 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~ 161 (471)
....... .......+.+++++.+||+|++. . ...+..+|+.+++|++......
T Consensus 73 -----~~~~~~~----~~~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~-------------- 129 (375)
T 3beo_A 73 -----RQTLIDI----TTRGLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGL-------------- 129 (375)
T ss_dssp -----TCCHHHH----HHHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCC--------------
T ss_pred -----cccHHHH----HHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccc--------------
Confidence 0011111 11234457778888899999996 2 2234457788999998532210
Q ss_pred CCCCCCCccccCCCCCCCCCCcccccccccccccccccCCCCc-hhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-
Q 012080 162 PKDRPVTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEG-MSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR- 239 (471)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~- 239 (471)
.... .+... ..+.++.. ....+.+++.+-.. .+.+..
T Consensus 130 ---------------~~~~-------------------~~~~~~~~~~~~~~--~~~~d~ii~~s~~~-----~~~~~~~ 168 (375)
T 3beo_A 130 ---------------RTWD-------------------KYSPYPEEMNRQLT--GVMADLHFSPTAKS-----ATNLQKE 168 (375)
T ss_dssp ---------------CCSC-------------------TTSSTTHHHHHHHH--HHHCSEEEESSHHH-----HHHHHHT
T ss_pred ---------------cccc-------------------ccCCChhHhhhhHH--hhhhheeeCCCHHH-----HHHHHHc
Confidence 0000 00000 01111111 12256666654432 122222
Q ss_pred HcC-CCeEEeccC-CCC---CCCCCChhhhhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhc-----CCceEEE
Q 012080 240 QYN-KPVFLTGPV-LHE---PAKTPSEERWDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELT-----GLCFLIA 309 (471)
Q Consensus 240 ~~~-~~v~~vGp~-~~~---~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~~~~ 309 (471)
..+ .++..+|.. ... ........++.+.+ +++++++++.|...... ..+..++++++.. +.++++
T Consensus 169 g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~- 243 (375)
T 3beo_A 169 NKDESRIFITGNTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVY- 243 (375)
T ss_dssp TCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEE-
T ss_pred CCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEE-
Confidence 111 246777632 111 00000111222222 23457777788764321 2345555655332 334333
Q ss_pred eCCCCCCCcccccCChhHHHhhC-CCcEEeccccCc---hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccch
Q 012080 310 LKPPTGASTVEEAFPDGFAERTK-GRGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQI 385 (471)
Q Consensus 310 ~~~~~~~~~~~~~~p~~~~~~~~-~~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~ 385 (471)
+.+.. .. +-+.+.+... .+++.+.+++++ .++++.+++ ||+..| +.++||+++|+|+|+.+..+..
T Consensus 244 -~~g~~-~~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~- 313 (375)
T 3beo_A 244 -PVHMN-PV----VRETANDILGDYGRIHLIEPLDVIDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTER- 313 (375)
T ss_dssp -ECCSC-HH----HHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSC-
T ss_pred -eCCCC-HH----HHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCC-
Confidence 32111 00 1111222122 268888777765 467888898 888863 5588999999999998643433
Q ss_pred hhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 386 LNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 386 ~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
..+. +.|.|..++ .+.++|.++|.++++|+
T Consensus 314 ---~e~v-~~g~g~~v~------~d~~~la~~i~~ll~~~ 343 (375)
T 3beo_A 314 ---PEGI-EAGTLKLAG------TDEETIFSLADELLSDK 343 (375)
T ss_dssp ---HHHH-HTTSEEECC------SCHHHHHHHHHHHHHCH
T ss_pred ---ceee-cCCceEEcC------CCHHHHHHHHHHHHhCh
Confidence 2245 557887776 37889999999999886
No 37
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.14 E-value=8e-10 Score=108.22 Aligned_cols=314 Identities=11% Similarity=0.095 Sum_probs=170.6
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh-hhccCCCCCCCeEEEEecCCC-CCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT-QLQHFNLHPDLITLHPLTVPH-VDGLPAGAETASD 89 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~ 89 (471)
..|++++++. |++-...-+.+|.++|.++ +++.++.+....+ .+.. +-|..+..+. ...+..+ .+
T Consensus 7 ~~~~~~~~v~-GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~-------~~~~~~~i~~~~~~l~~~----~~ 73 (385)
T 4hwg_A 7 HHMLKVMTIV-GTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQ-------VFFDDMGIRKPDYFLEVA----AD 73 (385)
T ss_dssp -CCCEEEEEE-CSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTH-------HHHC-CCCCCCSEECCCC----CC
T ss_pred hhhhheeEEE-EcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHH-------HHHhhCCCCCCceecCCC----CC
Confidence 3567777764 6688888888888889877 9988888776543 2211 1111111100 0011111 11
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---CccchHHHHHHcCCceEEEecchhHHHHHhhccccCCCCCCC
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---IAYWMATISKSLSIKCIKYNVVCAASIATALVPARNVPKDRP 166 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~p~~~~~~~~~ 166 (471)
.. ..........+.+++++.+||+|++- .+.++..+|..+|||++.+.... .. .
T Consensus 74 ---~~----~~~~~~~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl-rs-------~-------- 130 (385)
T 4hwg_A 74 ---NT----AKSIGLVIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN-RC-------F-------- 130 (385)
T ss_dssp ---CS----HHHHHHHHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-CC-------S--------
T ss_pred ---CH----HHHHHHHHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-cc-------c--------
Confidence 11 22233456778889999999998773 34455788999999976543211 00 0
Q ss_pred CCccccCCCCCCCCCCcccccccccccccccccCCCCchhHHHHHHhhhccCCEEEEcCccccchhHHHHHHH-Hc-CCC
Q 012080 167 VTEAELAMPPAGYPSDTIVLRRHEARELTFISFPFGEGMSFYERITTSLKESDAISIRTCHEIEGDLCEYIAR-QY-NKP 244 (471)
Q Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~~~ 244 (471)
. ..+| ....|..- ...++.+++.+-. ..+.+.. .. +.+
T Consensus 131 -------~--~~~p-------------------------ee~nR~~~-~~~a~~~~~~te~-----~~~~l~~~G~~~~~ 170 (385)
T 4hwg_A 131 -------D--QRVP-------------------------EEINRKII-DHISDVNITLTEH-----ARRYLIAEGLPAEL 170 (385)
T ss_dssp -------C--TTST-------------------------HHHHHHHH-HHHCSEEEESSHH-----HHHHHHHTTCCGGG
T ss_pred -------c--ccCc-------------------------HHHHHHHH-HhhhceeecCCHH-----HHHHHHHcCCCcCc
Confidence 0 0011 11111110 1124555554332 1222221 12 235
Q ss_pred eEEeccC-CCCCCC---CCChhhhhhccCCCCCCcEEEEEeCccccCC-HHHHHHHHHHHHhc----CCceEEEeCCCCC
Q 012080 245 VFLTGPV-LHEPAK---TPSEERWDKWLGGFERSSVVYCAFGSQIILE-KKQFQELLLGLELT----GLCFLIALKPPTG 315 (471)
Q Consensus 245 v~~vGp~-~~~~~~---~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~~~~al~~~----~~~~~~~~~~~~~ 315 (471)
++++|.. ...... .....++.+.+.-.+ ++.|+++.|...... .+.+..+++++... +.++++...+.
T Consensus 171 I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~-- 247 (385)
T 4hwg_A 171 TFKSGSHMPEVLDRFMPKILKSDILDKLSLTP-KQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPR-- 247 (385)
T ss_dssp EEECCCSHHHHHHHHHHHHHHCCHHHHTTCCT-TSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHH--
T ss_pred EEEECCchHHHHHHhhhhcchhHHHHHcCCCc-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChH--
Confidence 8888842 211000 001122333333222 458888888754322 24456666766432 56677764310
Q ss_pred CCcccccCChhHHHh---h-CCCcEEeccccCc---hhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhH
Q 012080 316 ASTVEEAFPDGFAER---T-KGRGVVCGEWVEQ---MPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNT 388 (471)
Q Consensus 316 ~~~~~~~~p~~~~~~---~-~~~nv~~~~~~pq---~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na 388 (471)
.-+.+... . ..+|+++.+.+++ ..+++++++ +|+-.|. .+.||.++|+|+|+++...+.+.
T Consensus 248 -------~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~e-- 315 (385)
T 4hwg_A 248 -------TKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERPE-- 315 (385)
T ss_dssp -------HHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCTH--
T ss_pred -------HHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccchh--
Confidence 11111111 1 1357877666554 468889998 9998776 46999999999999986544222
Q ss_pred HHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 389 RLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 389 ~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
.. +.|.++.+. .+.++|.+++.++|+|+
T Consensus 316 --~v-~~G~~~lv~------~d~~~i~~ai~~ll~d~ 343 (385)
T 4hwg_A 316 --GM-DAGTLIMSG------FKAERVLQAVKTITEEH 343 (385)
T ss_dssp --HH-HHTCCEECC------SSHHHHHHHHHHHHTTC
T ss_pred --hh-hcCceEEcC------CCHHHHHHHHHHHHhCh
Confidence 35 668777665 47889999999999886
No 38
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.08 E-value=7.8e-08 Score=95.23 Aligned_cols=113 Identities=7% Similarity=-0.007 Sum_probs=74.8
Q ss_pred CCcEEeccccC---c---hhhhcccCcceeeccC----CcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee
Q 012080 333 GRGVVCGEWVE---Q---MPILEHSSVGCFVSHC----GFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 333 ~~nv~~~~~~p---q---~~lL~~~~v~~~ItHg----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
.++|.+.+|++ + .++++.+++ +|.-. ..++++||+++|+|+|+.+. ..+...+. .-+.|..++
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~-~~~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIV-DGETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCC-BTTTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhhee-cCCCeEEEC
Confidence 46888888775 2 357888888 66433 45689999999999999764 34555555 556777665
Q ss_pred cccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 403 REENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
+.+++.++|.++++|+ +..+.+.+++++..+ +.-.....++.+.+.+.++
T Consensus 365 -------d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~---~~fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLKHP-EVSKEMGAKAKERVR---KNFIITKHMERYLDILNSL 414 (416)
T ss_dssp -------SHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH---HHTBHHHHHHHHHHHHHTC
T ss_pred -------CHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHh
Confidence 5678999999999885 334444555544332 2223345556666665544
No 39
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.04 E-value=7.9e-08 Score=97.28 Aligned_cols=171 Identities=12% Similarity=0.021 Sum_probs=94.3
Q ss_pred EEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEE-eccccCc--hhhhccc
Q 012080 276 VVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVV-CGEWVEQ--MPILEHS 351 (471)
Q Consensus 276 vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~-~~~~~pq--~~lL~~~ 351 (471)
.+++..|.+.. ...+.+.+.+..+...+.+++++-. +. ....+.+ ....... +.+++ +.++... ..++..+
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~-g~--~~~~~~l-~~~~~~~-~~~v~~~~g~~~~~~~~~~~~a 366 (485)
T 1rzu_A 292 PLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGA-GD--VALEGAL-LAAASRH-HGRVGVAIGYNEPLSHLMQAGC 366 (485)
T ss_dssp CEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEEC-BC--HHHHHHH-HHHHHHT-TTTEEEEESCCHHHHHHHHHHC
T ss_pred eEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeC-Cc--hHHHHHH-HHHHHhC-CCcEEEecCCCHHHHHHHHhcC
Confidence 57777888764 2233333333333333566655532 11 0000101 1111122 25776 6667322 2578889
Q ss_pred Ccceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh---------cceEEeecccCCcccHHHHHHHH
Q 012080 352 SVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL---------KVAVEVEREENGWFSKESLCKAI 418 (471)
Q Consensus 352 ~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~---------G~G~~l~~~~~~~~t~~~l~~ai 418 (471)
++ ||. -|...+++||+++|+|+|+... ......+. .- +.|..++. -+.+++.++|
T Consensus 367 dv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~~~G~l~~~-----~d~~~la~~i 434 (485)
T 1rzu_A 367 DA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVI-DANHAALASKAATGVQFSP-----VTLDGLKQAI 434 (485)
T ss_dssp SE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTCCCBEEESS-----CSHHHHHHHH
T ss_pred CE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheec-ccccccccccCCcceEeCC-----CCHHHHHHHH
Confidence 98 662 2445799999999999999764 34444444 43 67888875 5789999999
Q ss_pred HHHh---ccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcccccccC
Q 012080 419 KCVM---DKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSCEVHT 470 (471)
Q Consensus 419 ~~ll---~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 470 (471)
.+++ +|+ +..+.+.+++. ++.-.-...++.+++...++.+.+-|+
T Consensus 435 ~~ll~~~~~~-~~~~~~~~~~~------~~~fs~~~~~~~~~~~y~~~~~~~~~~ 482 (485)
T 1rzu_A 435 RRTVRYYHDP-KLWTQMQKLGM------KSDVSWEKSAGLYAALYSQLISKGHHH 482 (485)
T ss_dssp HHHHHHHTCH-HHHHHHHHHHH------TCCCBHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHhCCH-HHHHHHHHHHH------HHhCChHHHHHHHHHHHHHhhCCCCCc
Confidence 9999 564 22333333332 123344455677777776666555443
No 40
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.04 E-value=2.8e-09 Score=102.72 Aligned_cols=125 Identities=15% Similarity=0.066 Sum_probs=80.1
Q ss_pred EEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCch---hhhcccCc
Q 012080 277 VYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQM---PILEHSSV 353 (471)
Q Consensus 277 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~---~lL~~~~v 353 (471)
+++..|.... ......++++++..+.+++++ |.+... +.+ +.+....+ +++.+.+|+|+. +++..+++
T Consensus 164 ~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i~-G~g~~~----~~l-~~~~~~~~-~~v~~~g~~~~~~l~~~~~~adv 234 (342)
T 2iuy_A 164 FLLFMGRVSP--HKGALEAAAFAHACGRRLVLA-GPAWEP----EYF-DEITRRYG-STVEPIGEVGGERRLDLLASAHA 234 (342)
T ss_dssp CEEEESCCCG--GGTHHHHHHHHHHHTCCEEEE-SCCCCH----HHH-HHHHHHHT-TTEEECCCCCHHHHHHHHHHCSE
T ss_pred EEEEEecccc--ccCHHHHHHHHHhcCcEEEEE-eCcccH----HHH-HHHHHHhC-CCEEEeccCCHHHHHHHHHhCCE
Confidence 4555677642 334556666666667776655 322111 101 11222233 789999999975 68888998
Q ss_pred ceee--cc-----------CC-cchHHHHHhhCCcEEeccccccchhhHHHHHHh--hcceEEeecccCCcccHHHHHHH
Q 012080 354 GCFV--SH-----------CG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEE--LKVAVEVEREENGWFSKESLCKA 417 (471)
Q Consensus 354 ~~~I--tH-----------gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~--~G~G~~l~~~~~~~~t~~~l~~a 417 (471)
+| +. -| .++++||+++|+|+|+... ..+...++ . -+.|..++ .+.+++.++
T Consensus 235 --~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~-~~~~~~g~~~~------~d~~~l~~~ 301 (342)
T 2iuy_A 235 --VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVP-SVGEVVGYGTD------FAPDEARRT 301 (342)
T ss_dssp --EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGG-GGEEECCSSSC------CCHHHHHHH
T ss_pred --EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhc-ccCCCceEEcC------CCHHHHHHH
Confidence 55 32 33 3689999999999999875 34555555 5 44666555 278889999
Q ss_pred HHHHhc
Q 012080 418 IKCVMD 423 (471)
Q Consensus 418 i~~ll~ 423 (471)
|.++++
T Consensus 302 i~~l~~ 307 (342)
T 2iuy_A 302 LAGLPA 307 (342)
T ss_dssp HHTSCC
T ss_pred HHHHHH
Confidence 999985
No 41
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.88 E-value=9.9e-07 Score=89.13 Aligned_cols=165 Identities=12% Similarity=-0.023 Sum_probs=92.4
Q ss_pred EEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHH---hhCCCcEE-eccccCc--hhhh
Q 012080 276 VVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAE---RTKGRGVV-CGEWVEQ--MPIL 348 (471)
Q Consensus 276 vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~nv~-~~~~~pq--~~lL 348 (471)
.+++..|.+.. ...+.+.+.+..+...+.+++++-. +. .. .-+.+.. .. +.++. +.++... ..++
T Consensus 293 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~-g~--~~----~~~~l~~~~~~~-~~~v~~~~g~~~~~~~~~~ 364 (485)
T 2qzs_A 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGA-GD--PV----LQEGFLAAAAEY-PGQVGVQIGYHEAFSHRIM 364 (485)
T ss_dssp CEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEE-EC--HH----HHHHHHHHHHHS-TTTEEEEESCCHHHHHHHH
T ss_pred eEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeC-Cc--hH----HHHHHHHHHHhC-CCcEEEeCCCCHHHHHHHH
Confidence 56667777653 2333333333333333566555532 10 00 0111211 22 25675 6667332 3678
Q ss_pred cccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhh---------cceEEeecccCCcccHHHHH
Q 012080 349 EHSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEEL---------KVAVEVEREENGWFSKESLC 415 (471)
Q Consensus 349 ~~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~---------G~G~~l~~~~~~~~t~~~l~ 415 (471)
..+++ ||. -|..++++||+++|+|+|+... ......+. .- +.|..++. -+.+++.
T Consensus 365 ~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~~~G~l~~~-----~d~~~la 432 (485)
T 2qzs_A 365 GGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVS-DCSLENLADGVASGFVFED-----SNAWSLL 432 (485)
T ss_dssp HHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTCCCBEEECS-----SSHHHHH
T ss_pred HhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceec-cCccccccccccceEEECC-----CCHHHHH
Confidence 88998 662 2444689999999999999754 34444444 43 67888876 5789999
Q ss_pred HHHHHHh---ccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhccccc
Q 012080 416 KAIKCVM---DKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLVSCE 467 (471)
Q Consensus 416 ~ai~~ll---~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 467 (471)
++|.+++ .|+ +..+.+.+++.+ +.-.-...++.+.+.+.++.+..
T Consensus 433 ~~i~~ll~~~~~~-~~~~~~~~~~~~------~~fs~~~~~~~~~~ly~~~~~~~ 480 (485)
T 2qzs_A 433 RAIRRAFVLWSRP-SLWRFVQRQAMA------MDFSWQVAAKSYRELYYRLKLEH 480 (485)
T ss_dssp HHHHHHHHHHTSH-HHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHh------hcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999 564 233334333321 23344455677776666655433
No 42
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.78 E-value=3.2e-07 Score=97.42 Aligned_cols=95 Identities=5% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCcEEeccc----cCchhhhc----ccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEE
Q 012080 333 GRGVVCGEW----VEQMPILE----HSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVE 400 (471)
Q Consensus 333 ~~nv~~~~~----~pq~~lL~----~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 400 (471)
..+|.+.++ +|+.++.. .+++ ||. -|-..+++||+++|+|+|+. |-......+. .-+.|..
T Consensus 639 ~~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~-dg~~Gll 711 (816)
T 3s28_A 639 NGQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIV-HGKSGFH 711 (816)
T ss_dssp BBBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCC-BTTTBEE
T ss_pred CCcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHc-cCCcEEE
Confidence 357777764 44455543 4566 663 23346999999999999996 4445555566 6668888
Q ss_pred eecccCCcccHHHHHHHHHHHh----ccCchhhHHHHHHHHHHH
Q 012080 401 VEREENGWFSKESLCKAIKCVM----DKESEVGNVVRRNHAKWK 440 (471)
Q Consensus 401 l~~~~~~~~t~~~l~~ai~~ll----~~~~~~~~~~~~~a~~l~ 440 (471)
++. -+.+++.++|.+++ .|+ +..+.+.++|++..
T Consensus 712 v~p-----~D~e~LA~aI~~lL~~Ll~d~-~~~~~m~~~ar~~a 749 (816)
T 3s28_A 712 IDP-----YHGDQAADTLADFFTKCKEDP-SHWDEISKGGLQRI 749 (816)
T ss_dssp ECT-----TSHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred eCC-----CCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHH
Confidence 886 57888999997766 775 44555555555544
No 43
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.76 E-value=3.6e-06 Score=83.01 Aligned_cols=112 Identities=7% Similarity=-0.006 Sum_probs=69.4
Q ss_pred EEeccccCch---hhhcccCcceeec----cCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcc-----------
Q 012080 336 VVCGEWVEQM---PILEHSSVGCFVS----HCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKV----------- 397 (471)
Q Consensus 336 v~~~~~~pq~---~lL~~~~v~~~It----HgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~----------- 397 (471)
+.+.+|+|+. +++..+++ +|. -|...+++||+++|+|+|+... ......+. .-..
T Consensus 256 v~~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----~g~~e~v~-~~~~~~i~~~~~~~~ 328 (413)
T 3oy2_A 256 MINRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAV----GGADDYFS-GDCVYKIKPSAWISV 328 (413)
T ss_dssp EEECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECC----HHHHHHSC-TTTSEEECCCEEEEC
T ss_pred eeccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCC----CChHHHHc-cCccccccccccccc
Confidence 7778899854 47788888 652 2334689999999999999653 23333333 2211
Q ss_pred ----eE--EeecccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhcc
Q 012080 398 ----AV--EVEREENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGLV 464 (471)
Q Consensus 398 ----G~--~l~~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 464 (471)
|. .+.. -+.+++.++| ++++|+ +.. ++..+..++.+++.-.-...++.+.+.+.++.
T Consensus 329 ~~~~G~~gl~~~-----~d~~~la~~i-~l~~~~-~~~---~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 329 DDRDGIGGIEGI-----IDVDDLVEAF-TFFKDE-KNR---KEYGKRVQDFVKTKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp TTTCSSCCEEEE-----CCHHHHHHHH-HHTTSH-HHH---HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHT
T ss_pred ccccCcceeeCC-----CCHHHHHHHH-HHhcCH-HHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 54 5554 5889999999 999986 222 33333333344344344555555555555544
No 44
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.50 E-value=4.2e-05 Score=78.74 Aligned_cols=119 Identities=10% Similarity=0.111 Sum_probs=74.9
Q ss_pred CcEEeccccCch---hhhcccCcceee--c-cCCcchHHHHHhhCCcEEecccccc-chhhHHHHHHhhcceEEeecccC
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFV--S-HCGFGSMWESLMSDCQIVLVPHLGD-QILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~I--t-HgG~~s~~Eal~~GvP~v~~P~~~D-Q~~na~~v~~~~G~G~~l~~~~~ 406 (471)
++|++.+++|+. .++..+++ || + .|+.++++||+++|+|+|+.|-..= -...+..+. ..|+...+.
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~-~~g~~e~v~---- 506 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNH-HLGLDEMNV---- 506 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHH-HHTCGGGBC----
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHH-HCCChhhhc----
Confidence 678999999854 56888888 66 2 3566799999999999999873211 112234555 667765554
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
-+.+++.++|.++++|+ +..+.+.+++++..+. ...-.....++.+.+.+.+.
T Consensus 507 --~~~~~la~~i~~l~~~~-~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~y~~~ 559 (568)
T 2vsy_A 507 --ADDAAFVAKAVALASDP-AALTALHARVDVLRRA-SGVFHMDGFADDFGALLQAL 559 (568)
T ss_dssp --SSHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHH-SSTTCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHH
Confidence 27889999999999985 3344455554443311 22223344445554444433
No 45
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.44 E-value=9.8e-05 Score=72.67 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=58.3
Q ss_pred CCcEEeccccCch---hhhcccCcceeec---cCCc-chHHHHH-------hhCCcEEeccccccchhhHHHHHHhhcce
Q 012080 333 GRGVVCGEWVEQM---PILEHSSVGCFVS---HCGF-GSMWESL-------MSDCQIVLVPHLGDQILNTRLLAEELKVA 398 (471)
Q Consensus 333 ~~nv~~~~~~pq~---~lL~~~~v~~~It---HgG~-~s~~Eal-------~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 398 (471)
.++|.+.+++|+. ++++.+++ ||. +-|. ++++||+ ++|+|+|+... +. .-..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~-~~~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VV-GPYKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GT-CSCSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cc-cCcce
Confidence 3578999999864 46788898 553 3344 6789999 99999999865 45 55568
Q ss_pred EE-eecccCCcccHHHHHHHHHHHhccC
Q 012080 399 VE-VEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 399 ~~-l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
.. ++. -+.+++.++|.++++|+
T Consensus 331 ~l~v~~-----~d~~~la~ai~~ll~~~ 353 (406)
T 2hy7_A 331 RFGYTP-----GNADSVIAAITQALEAP 353 (406)
T ss_dssp EEEECT-----TCHHHHHHHHHHHHHCC
T ss_pred EEEeCC-----CCHHHHHHHHHHHHhCc
Confidence 77 775 57899999999999886
No 46
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.42 E-value=1.6e-06 Score=74.85 Aligned_cols=130 Identities=12% Similarity=-0.004 Sum_probs=85.5
Q ss_pred EEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChhHH--HhhCCCcEEeccccCc---hhhhc
Q 012080 276 VVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDGFA--ERTKGRGVVCGEWVEQ---MPILE 349 (471)
Q Consensus 276 vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~nv~~~~~~pq---~~lL~ 349 (471)
.+++..|+... ...+..++++++.. +.+++++ +.+...+.+. +-.. ...-.+|+.+.+|+|+ ..++.
T Consensus 24 ~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~l~i~-G~~~~~~~l~----~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~ 96 (177)
T 2f9f_A 24 DFWLSVNRIYP--EKRIELQLEVFKKLQDEKLYIV-GWFSKGDHAE----RYARKIMKIAPDNVKFLGSVSEEELIDLYS 96 (177)
T ss_dssp SCEEEECCSSG--GGTHHHHHHHHHHCTTSCEEEE-BCCCTTSTHH----HHHHHHHHHSCTTEEEEESCCHHHHHHHHH
T ss_pred CEEEEEecccc--ccCHHHHHHHHHhCCCcEEEEE-ecCccHHHHH----HHHHhhhcccCCcEEEeCCCCHHHHHHHHH
Confidence 45566787753 23355566666555 4555554 4332221111 1111 1122468899999997 56888
Q ss_pred ccCcceeec---cCCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 350 HSSVGCFVS---HCGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 350 ~~~v~~~It---HgG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
.+++ +|. +.|+ .+++||+++|+|+|+... ..+...++ .-+.|..+ . -+.+++.++|.++++|+
T Consensus 97 ~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~-~~~~g~~~-~-----~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 97 RCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVI-NEKTGYLV-N-----ADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp HCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCC-BTTTEEEE-C-----SCHHHHHHHHHHHHHCT
T ss_pred hCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhc-CCCccEEe-C-----CCHHHHHHHHHHHHhCH
Confidence 8998 665 3444 599999999999999753 45555566 66688887 4 58899999999999887
No 47
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.35 E-value=0.00014 Score=70.72 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=68.6
Q ss_pred cEEeccccCc-hhhhcccCcceeec---c--CCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCc
Q 012080 335 GVVCGEWVEQ-MPILEHSSVGCFVS---H--CGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGW 408 (471)
Q Consensus 335 nv~~~~~~pq-~~lL~~~~v~~~It---H--gG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 408 (471)
++.+.++... ..+++.+++ ++. . +|..+++||+++|+|+|+-|..++.......+. +.|.++...
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~-~~G~l~~~~------ 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLE-KEGAGFEVK------ 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHH-HTTCEEECC------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHH-HCCCEEEeC------
Confidence 4566555443 468888887 553 2 345789999999999998777777777666665 556654432
Q ss_pred ccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhh
Q 012080 409 FSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 409 ~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
+.++|.++|.++++| +..+.|.++|++..+.
T Consensus 332 -d~~~La~ai~~ll~d--~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 332 -NETELVTKLTELLSV--KKEIKVEEKSREIKGC 362 (374)
T ss_dssp -SHHHHHHHHHHHHHS--CCCCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHh
Confidence 668899999999986 4555788888776554
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=98.25 E-value=0.0004 Score=70.60 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=94.5
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEe--CCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhh---c
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIAL--KPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPIL---E 349 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL---~ 349 (471)
.++|.+|+......++.+...++-+++.+..++|.. +.+.+. ...+-..+....-++.+++.+.+|+.+.+ .
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~---~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~ 517 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGI---THPYVERFIKSYLGDSATAHPHSPYHQYLRILH 517 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGG---GHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHH
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchh---hHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHh
Confidence 599999999888888888888888877776777643 321111 11111122222112467788888876544 6
Q ss_pred ccCcceee---ccCCcchHHHHHhhCCcEEecccc-ccchhhHHHHHHhhcceEE-eecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFV---SHCGFGSMWESLMSDCQIVLVPHL-GDQILNTRLLAEELKVAVE-VEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~I---tHgG~~s~~Eal~~GvP~v~~P~~-~DQ~~na~~v~~~~G~G~~-l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+|+ |+ ..+|..|++|||++|||+|+++-- .--..-+..+. ..|+.-. +. -+.++..+...++.+|
T Consensus 518 ~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~-~~GLpE~LIA------~d~eeYv~~Av~La~D 588 (631)
T 3q3e_A 518 NCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFK-RLGLPEWLIA------NTVDEYVERAVRLAEN 588 (631)
T ss_dssp TCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHH-HTTCCGGGEE------SSHHHHHHHHHHHHHC
T ss_pred cCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHH-hcCCCcceec------CCHHHHHHHHHHHhCC
Confidence 7777 54 347789999999999999999821 11122233455 5676542 43 3677888888888888
Q ss_pred CchhhHHHHHHHH
Q 012080 425 ESEVGNVVRRNHA 437 (471)
Q Consensus 425 ~~~~~~~~~~~a~ 437 (471)
+ +..+.++++++
T Consensus 589 ~-~~l~~LR~~Lr 600 (631)
T 3q3e_A 589 H-QERLELRRYII 600 (631)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHH
Confidence 5 33344444443
No 49
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.74 E-value=0.00013 Score=61.72 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=62.0
Q ss_pred cEEeccccCch---hhhcccCcceeec----cCCcchHHHHHhhCC-cEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 335 GVVCGEWVEQM---PILEHSSVGCFVS----HCGFGSMWESLMSDC-QIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 335 nv~~~~~~pq~---~lL~~~~v~~~It----HgG~~s~~Eal~~Gv-P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
++.+ +|+|+. .++..+++ +|. -|...+++||+++|+ |+|+....+ .....+. .-+. .+..
T Consensus 57 ~v~~-g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~---~~~~~~~-~~~~--~~~~--- 124 (166)
T 3qhp_A 57 KAEF-GFVNSNELLEILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLS---ATRQFAL-DERS--LFEP--- 124 (166)
T ss_dssp EEEC-CCCCHHHHHHHHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTC---GGGGGCS-SGGG--EECT---
T ss_pred eEEE-eecCHHHHHHHHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCC---chhhhcc-CCce--EEcC---
Confidence 7778 899864 47788888 664 233469999999996 999933211 1111222 2222 3443
Q ss_pred CcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhh
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTL 443 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~ 443 (471)
-+.+++.++|.++++|+ +..+.+.+++++..+.+
T Consensus 125 --~~~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~~~~ 158 (166)
T 3qhp_A 125 --NNAKDLSAKIDWWLENK-LERERMQNEYAKSALNY 158 (166)
T ss_dssp --TCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHC
Confidence 57899999999999975 55556777776665443
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.54 E-value=0.0014 Score=69.18 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=94.2
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHh-hCCCcEEeccccCchhhh---c
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAER-TKGRGVVCGEWVEQMPIL---E 349 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~nv~~~~~~pq~~lL---~ 349 (471)
..+||.||-.....+++.+...++-|++.+.-++|.+..+... ...+-..+... ...+.+++.+..|..+.| .
T Consensus 522 ~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~---~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~ 598 (723)
T 4gyw_A 522 DAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG---EPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQ 598 (723)
T ss_dssp TSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGG---HHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGG
T ss_pred CCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHH---HHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhC
Confidence 4599999999999999999998888888888888887632110 00111112111 123567888888865544 5
Q ss_pred ccCcceeec---cCCcchHHHHHhhCCcEEecc-ccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhccC
Q 012080 350 HSSVGCFVS---HCGFGSMWESLMSDCQIVLVP-HLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 350 ~~~v~~~It---HgG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~~ 425 (471)
..|+ ++- .+|..|++|||+.|||+|++| -..=.+.-+..+. .+|+.-.+- -+.++-.+...++-.|.
T Consensus 599 ~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~-~~gl~e~ia------~~~~~Y~~~a~~la~d~ 669 (723)
T 4gyw_A 599 LADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLT-CLGCLELIA------KNRQEYEDIAVKLGTDL 669 (723)
T ss_dssp GCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHH-HHTCGGGBC------SSHHHHHHHHHHHHHCH
T ss_pred CCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHH-HcCCccccc------CCHHHHHHHHHHHhcCH
Confidence 5666 765 889999999999999999999 2223344456677 777776555 35566554444666664
No 51
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.52 E-value=0.0024 Score=55.46 Aligned_cols=94 Identities=11% Similarity=-0.028 Sum_probs=66.4
Q ss_pred cEEe-ccccCch---hhhcccCcceeecc---CC-cchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 335 GVVC-GEWVEQM---PILEHSSVGCFVSH---CG-FGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 335 nv~~-~~~~pq~---~lL~~~~v~~~ItH---gG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
++.+ .+|+++. .++..+++ +|.- -| ..+++||+++|+|+|+.... .....+ .-+.|..++.
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~--~~~~g~~~~~--- 164 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII--TNETGILVKA--- 164 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC--CTTTCEEECT---
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc--CCCceEEecC---
Confidence 8888 8999853 57888888 6632 23 46899999999999987542 222222 3456777775
Q ss_pred CcccHHHHHHHHHHHhc-cCchhhHHHHHHHHHHHhh
Q 012080 407 GWFSKESLCKAIKCVMD-KESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~-~~~~~~~~~~~~a~~l~~~ 442 (471)
-+.+++.++|.++++ |+ +..+.+.++|++..+.
T Consensus 165 --~~~~~l~~~i~~l~~~~~-~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 165 --GDPGELANAILKALELSR-SDLSKFRENCKKRAMS 198 (200)
T ss_dssp --TCHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHh
Confidence 578899999999998 85 4555666666655443
No 52
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.40 E-value=0.035 Score=52.99 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=73.6
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCe-EEEEecCCCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLI-TLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 86 (471)
+.-+..+||++-..+.|++.-+.++.+.|+++ +.+|++++.+.+...++... .+ +++.++..
T Consensus 4 ~~l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p----~vd~vi~~~~~----------- 68 (349)
T 3tov_A 4 MELDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNP----NIDELIVVDKK----------- 68 (349)
T ss_dssp CCCTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCT----TCSEEEEECCS-----------
T ss_pred cCCCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCC----CccEEEEeCcc-----------
Confidence 34556799999999999999999999999988 89999999999887775432 24 34444310
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCC-cEEEEc-CccchHHHHHHcCCceEE
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKP-RLLFYD-IAYWMATISKSLSIKCIK 142 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-Dlvi~D-~~~~~~~~A~~~giP~v~ 142 (471)
. ....+.. ...+...|++.+| |++|.= ...-...++...|+|..+
T Consensus 69 ----~--~~~~~~~-----~~~l~~~Lr~~~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 69 ----G--RHNSISG-----LNEVAREINAKGKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp ----S--HHHHHHH-----HHHHHHHHHHHCCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred ----c--ccccHHH-----HHHHHHHHhhCCCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 0 0000111 1234455677789 998855 355566788889999653
No 53
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.25 E-value=0.00065 Score=64.82 Aligned_cols=108 Identities=13% Similarity=0.063 Sum_probs=80.4
Q ss_pred cEEeccccCchhh---hcccCcceeeccCCc---------chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEee
Q 012080 335 GVVCGEWVEQMPI---LEHSSVGCFVSHCGF---------GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVE 402 (471)
Q Consensus 335 nv~~~~~~pq~~l---L~~~~v~~~ItHgG~---------~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 402 (471)
||...+|+|+.++ |..++.+++..-+.+ +-+.|++++|+|+|+.+ ...++..++ +.|+|..++
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~-~~~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIE-NNGLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHH-HHTCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHH-hCCeEEEeC
Confidence 8899999998765 445566555533322 34789999999999855 557788888 999999886
Q ss_pred cccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHH
Q 012080 403 REENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFV 457 (471)
Q Consensus 403 ~~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~ 457 (471)
+.+++.++|.++.. ++.+.|++||++.++.++..-...+++.+.+
T Consensus 290 -------~~~e~~~~i~~l~~---~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~ 334 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNE---DEYIELVKNVRSFNPILRKGFFTRRLLTESV 334 (339)
T ss_dssp -------SHHHHHHHHHHCCH---HHHHHHHHHHHHHTHHHHTTHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34678888887642 4677899999999999988766666655444
No 54
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.07 E-value=0.044 Score=52.11 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=67.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhccCCCCCCCe-EEEEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQHFNLHPDLI-TLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
+||+++.....|++.-..++.+.|+++ +.+|++++.+.+...++... .+ +++.++. ... .
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~p----~i~~v~~~~~------~~~-------~ 63 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMP----EVNEAIPMPL------GHG-------A 63 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCT----TEEEEEEC-------------------
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCC----ccCEEEEecC------Ccc-------c
Confidence 489999988889999999999999987 99999999998777664332 24 3443321 000 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEE
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIK 142 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~ 142 (471)
.. . .....+...+++.+||++| | . ......++...|+|...
T Consensus 64 ~~--------~-~~~~~l~~~l~~~~~D~vi-d~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 64 LE--------I-GERRKLGHSLREKRYDRAY-VLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp -C--------H-HHHHHHHHHTTTTTCSEEE-ECSCCSGGGHHHHHTTCSEEE
T ss_pred cc--------h-HHHHHHHHHHHhcCCCEEE-ECCCChHHHHHHHHhCCCEEe
Confidence 00 0 1123455566777899988 6 3 55566788888999743
No 55
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.76 E-value=0.068 Score=50.32 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=40.2
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchhhhcc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQTQLQH 59 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~~~~~ 59 (471)
+||+++-..+.|++.-..++.+.|+++ +.+|++++.+.+...++.
T Consensus 1 ~~ILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~ 47 (326)
T 2gt1_A 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSW 47 (326)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTHHHHT
T ss_pred CeEEEEeccccchHHhHHHHHHHHHHhCCCCEEEEEEehhhhHHHhc
Confidence 489999888999999999999999988 899999999988777654
No 56
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=95.75 E-value=0.038 Score=54.13 Aligned_cols=79 Identities=13% Similarity=-0.018 Sum_probs=57.2
Q ss_pred CcEEeccccCch---hhhcccCcceeec--c-CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccC
Q 012080 334 RGVVCGEWVEQM---PILEHSSVGCFVS--H-CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREEN 406 (471)
Q Consensus 334 ~nv~~~~~~pq~---~lL~~~~v~~~It--H-gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 406 (471)
.++.+.+++|+. +++..+++ ||. . =|. .+++||+++|+|+|+ -..+ ....++ .-..|..++.
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~-~~~~G~lv~~--- 363 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSN-WHSNIVSLEQ--- 363 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGG-TBTTEEEESS---
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhh-cCCCEEEeCC---
Confidence 477888899865 46778998 663 2 133 578999999999998 3222 122334 4446887876
Q ss_pred CcccHHHHHHHHHHHhccC
Q 012080 407 GWFSKESLCKAIKCVMDKE 425 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~ 425 (471)
-++++|.++|.++++|+
T Consensus 364 --~d~~~la~ai~~ll~~~ 380 (413)
T 2x0d_A 364 --LNPENIAETLVELCMSF 380 (413)
T ss_dssp --CSHHHHHHHHHHHHHHT
T ss_pred --CCHHHHHHHHHHHHcCH
Confidence 57889999999999987
No 57
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=94.15 E-value=0.66 Score=46.91 Aligned_cols=136 Identities=8% Similarity=-0.063 Sum_probs=72.4
Q ss_pred CcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHH--HhhCCCcEEeccccCch---hh
Q 012080 274 SSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFA--ERTKGRGVVCGEWVEQM---PI 347 (471)
Q Consensus 274 ~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~nv~~~~~~pq~---~l 347 (471)
..++++..|.+.. ...+.+.+.+..+...+.++++... +.. . ....+. ...-+.++.+..+.+.. .+
T Consensus 326 ~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~-G~~--~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 398 (536)
T 3vue_A 326 KIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGT-GKK--K----FEKLLKSMEEKYPGKVRAVVKFNAPLAHLI 398 (536)
T ss_dssp TSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECC-BCH--H----HHHHHHHHHHHSTTTEEEECSCCHHHHHHH
T ss_pred CCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEec-cCc--h----HHHHHHHHHhhcCCceEEEEeccHHHHHHH
Confidence 3356666787754 2333333333333334556555432 211 0 001111 11123466666666653 46
Q ss_pred hcccCcceeecc---CCc-chHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc-C----CcccHHHHHHHH
Q 012080 348 LEHSSVGCFVSH---CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE-N----GWFSKESLCKAI 418 (471)
Q Consensus 348 L~~~~v~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-~----~~~t~~~l~~ai 418 (471)
++.+++ ||.= =|. .+.+||+++|+|+|+... ......+. +-..|....... . ...+.+.|.++|
T Consensus 399 ~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V~-dg~~G~~~~~~~~~g~l~~~~d~~~la~ai 471 (536)
T 3vue_A 399 MAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTVI-EGKTGFHMGRLSVDCKVVEPSDVKKVAATL 471 (536)
T ss_dssp HHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHCC-BTTTEEECCCCCSCTTCCCHHHHHHHHHHH
T ss_pred HHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchheee-CCCCccccccCCCceeEECCCCHHHHHHHH
Confidence 788888 6642 233 589999999999998654 33444444 444454332210 0 014678899999
Q ss_pred HHHhc
Q 012080 419 KCVMD 423 (471)
Q Consensus 419 ~~ll~ 423 (471)
++++.
T Consensus 472 ~ral~ 476 (536)
T 3vue_A 472 KRAIK 476 (536)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 58
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=93.96 E-value=0.32 Score=43.67 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMS 93 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (471)
|.|||+.-=-+. +--=+..|+++|.+.| +|+++.++..+..+-..-.....+++..+... ........+.+
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~~~-------~~~~v~GTPaD 71 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKIDTD-------FYTVIDGTPAD 71 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEETT-------EEEETTCCHHH
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCcCCCCCceeEEeecc-------ceeecCCChHH
Confidence 346665532222 3344778899999998 59999999887655332233334666554310 00111222222
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEE----------cC----ccchHHHHHHcCCceEEEecc
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFY----------DI----AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~----------D~----~~~~~~~A~~~giP~v~~~~~ 146 (471)
.. .-.+..++.+.+||+||+ |+ +..|+.-|..+|||.|.+|..
T Consensus 72 CV----------~lal~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 72 CV----------HLGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HH----------HHHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HH----------hhhhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 11 112334566678999999 32 334455566799999998853
No 59
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=92.97 E-value=0.64 Score=41.48 Aligned_cols=113 Identities=12% Similarity=0.204 Sum_probs=65.3
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
+|||+.-=-+. |.-=+..|++.|.+.| +|+++.++..+..+-..-.....+++..+. .+.. ......+.+.
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit~~~pl~~~~~~----~~~~---~~v~GTPaDC 72 (251)
T 2phj_A 2 PTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLTFTEPLKMRKID----TDFY---TVIDGTPADC 72 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCCCSSCEEEEEEE----TTEE---EETTCCHHHH
T ss_pred CEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCccceecCCCeEEEEec----CCCe---EEECCCHHHH
Confidence 57766543222 4455788999999988 999999999877653322333346666554 1110 1112222221
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEc----------C----ccchHHHHHHcCCceEEEecc
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYD----------I----AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D----------~----~~~~~~~A~~~giP~v~~~~~ 146 (471)
.. -.+..++...+||+||+- . +..|+.-|..+|||.|.+|..
T Consensus 73 V~----------lal~~l~~~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 73 VH----------LGYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp HH----------HHHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HH----------HHHHHhcCCCCCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 11 122333444589999983 1 223344556799999999864
No 60
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=92.07 E-value=1.9 Score=38.03 Aligned_cols=114 Identities=9% Similarity=0.070 Sum_probs=72.1
Q ss_pred CCCccCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCC
Q 012080 4 SGSCSSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHV 77 (471)
Q Consensus 4 ~~~~~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~ 77 (471)
||.......+|+||+|+..++ |+ .+.++.+.|.+. +++|..+.+.... ...+..| +.+..++.
T Consensus 12 ~~~~~~~~~~~~rI~~l~SG~-g~--~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~g-----Ip~~~~~~--- 80 (229)
T 3auf_A 12 SGENLYFQGHMIRIGVLISGS-GT--NLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAG-----VDALHMDP--- 80 (229)
T ss_dssp CSBSSSCBTTCEEEEEEESSC-CH--HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTT-----CEEEECCG---
T ss_pred ccccccccCCCcEEEEEEeCC-cH--HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcC-----CCEEEECc---
Confidence 555556667788999997665 33 367777888776 6888766655321 2234445 77665431
Q ss_pred CCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 78 DGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. ...+ .+...+.+.+.|++.+||+||+= + ......+-......++.+.++.
T Consensus 81 ----~---~~~~------------r~~~~~~~~~~l~~~~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpSL 133 (229)
T 3auf_A 81 ----A---AYPS------------RTAFDAALAERLQAYGVDLVCLAGYMRLVRGPMLTAFPNRILNIHPSL 133 (229)
T ss_dssp ----G---GSSS------------HHHHHHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHSTTCEEEEESSC
T ss_pred ----c---cccc------------hhhccHHHHHHHHhcCCCEEEEcChhHhCCHHHHhhccCCEEEEccCc
Confidence 0 0000 11233557788889999999998 6 6666666677777778777653
No 61
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.54 E-value=5.2 Score=34.20 Aligned_cols=97 Identities=9% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc------hhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA------QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
++-.|++++..+.|-..-.+.+|.....+|++|.++..... ...++.++ ++++... .++ ..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~-----v~~~~~g----~gf----~~ 93 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-----VEFQVMA----TGF----TW 93 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-----CEEEECC----TTC----CC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC-----cEEEEcc----ccc----cc
Confidence 34679999999999999999999999999999999965442 12334433 7777654 111 11
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cc
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IA 126 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~ 126 (471)
. .. ...--............+.+.+.++|+||.| +.
T Consensus 94 --~-~~-~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~ 130 (196)
T 1g5t_A 94 --E-TQ-NREADTAACMAVWQHGKRMLADPLLDMVVLDELT 130 (196)
T ss_dssp --C-GG-GHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHH
T ss_pred --C-CC-CcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 1 11 1111122234445556666767789999999 64
No 62
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=89.19 E-value=1.3 Score=45.55 Aligned_cols=89 Identities=7% Similarity=-0.009 Sum_probs=50.2
Q ss_pred hhhcccCcceeecc---CCc-chHHHHHhhCCcEEeccccccchhhHHHHHH------hhcceEEeecccCCcccHHH--
Q 012080 346 PILEHSSVGCFVSH---CGF-GSMWESLMSDCQIVLVPHLGDQILNTRLLAE------ELKVAVEVEREENGWFSKES-- 413 (471)
Q Consensus 346 ~lL~~~~v~~~ItH---gG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~------~~G~G~~l~~~~~~~~t~~~-- 413 (471)
+++..+++ ||.- =|+ .+.+||+++|+|+|+.-..+ ....+.+ .-+.|+.+... ...+.++
T Consensus 514 ~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG----~~d~V~dg~~~~~~~~tG~lV~~r--d~~d~ee~a 585 (725)
T 3nb0_A 514 EFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVSG----FGSYMEDLIETNQAKDYGIYIVDR--RFKAPDESV 585 (725)
T ss_dssp HHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTBH----HHHHHHTTSCHHHHHHTTEEEECC--SSSCHHHHH
T ss_pred HHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCCC----hhhhhhccccccCCCCceEEEeCC--CCCCHHHHH
Confidence 47888888 5532 344 59999999999999865432 2222220 12467766421 0134444
Q ss_pred --HHHHHHHHhccCchhhHHHHHHHHHHHhh
Q 012080 414 --LCKAIKCVMDKESEVGNVVRRNHAKWKGT 442 (471)
Q Consensus 414 --l~~ai~~ll~~~~~~~~~~~~~a~~l~~~ 442 (471)
|.+++.+++..+...++.++++++++++.
T Consensus 586 eaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~ 616 (725)
T 3nb0_A 586 EQLVDYMEEFVKKTRRQRINQRNATEALSDL 616 (725)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 45555444443333445666666655543
No 63
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=88.27 E-value=3.7 Score=40.72 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=68.0
Q ss_pred eccccCchh---hhcccCcceeec---cCCc-chHHHHHhhCC-----cEEeccccccchhhHHHHHHhhcceEEeeccc
Q 012080 338 CGEWVEQMP---ILEHSSVGCFVS---HCGF-GSMWESLMSDC-----QIVLVPHLGDQILNTRLLAEELKVAVEVEREE 405 (471)
Q Consensus 338 ~~~~~pq~~---lL~~~~v~~~It---HgG~-~s~~Eal~~Gv-----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 405 (471)
+.+++|+.+ ++..+++ ||. .=|+ .+.+||+++|+ |+|+--..+- .+ .+.-|+.++.
T Consensus 336 ~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~-------~~-~l~~g~lv~p-- 403 (482)
T 1uqt_A 336 LNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGA-------AN-ELTSALIVNP-- 403 (482)
T ss_dssp ECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGG-------GG-TCTTSEEECT--
T ss_pred eCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCC-------HH-HhCCeEEECC--
Confidence 467788754 6677888 653 3355 48999999998 6666543221 11 2235777776
Q ss_pred CCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHhc
Q 012080 406 NGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRGL 463 (471)
Q Consensus 406 ~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~~ 463 (471)
-+.++++++|.++|+++.++ -+++.++..+.+++. .....++.+++.+.+.
T Consensus 404 ---~d~~~lA~ai~~lL~~~~~~---r~~~~~~~~~~v~~~-s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 ---YDRDEVAAALDRALTMSLAE---RISRHAEMLDVIVKN-DINHWQECFISDLKQI 454 (482)
T ss_dssp ---TCHHHHHHHHHHHHTCCHHH---HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhc
Confidence 67899999999999864222 333444444444432 4556667777777654
No 64
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=88.19 E-value=22 Score=35.24 Aligned_cols=109 Identities=11% Similarity=0.144 Sum_probs=70.6
Q ss_pred cEEeccccCch---hhhcccCcceeec---cCCcc-hHHHHHhhC---CcEEeccccccchhhHHHHHHhhc-ceEEeec
Q 012080 335 GVVCGEWVEQM---PILEHSSVGCFVS---HCGFG-SMWESLMSD---CQIVLVPHLGDQILNTRLLAEELK-VAVEVER 403 (471)
Q Consensus 335 nv~~~~~~pq~---~lL~~~~v~~~It---HgG~~-s~~Eal~~G---vP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~ 403 (471)
.|++...+|+. .++..+++ ||. .=|+| +.+|++++| .|+|+--+.+ .+. .+| -|+.+++
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv--~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~----~l~~~allVnP 422 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL--LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAE----VLGEYCRSVNP 422 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE--EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THH----HHGGGSEEECT
T ss_pred CEEEeCCCCHHHHHHHHHhccE--EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHH----HhCCCEEEECC
Confidence 46666677764 46667888 543 45786 568999996 5665543322 222 333 5888887
Q ss_pred ccCCcccHHHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHh
Q 012080 404 EENGWFSKESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQNMRG 462 (471)
Q Consensus 404 ~~~~~~t~~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~~~~~ 462 (471)
.+.+.++++|.++|+++. ++-+++.+++.+.++.. ....-++.|++.|..
T Consensus 423 -----~D~~~lA~AI~~aL~m~~---~er~~r~~~~~~~V~~~-d~~~W~~~fl~~L~~ 472 (496)
T 3t5t_A 423 -----FDLVEQAEAISAALAAGP---RQRAEAAARRRDAARPW-TLEAWVQAQLDGLAA 472 (496)
T ss_dssp -----TBHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHTTC-BHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHhh
Confidence 688999999999998651 14555666666666554 344555666666643
No 65
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=85.38 E-value=5.6 Score=34.65 Aligned_cols=104 Identities=9% Similarity=0.063 Sum_probs=62.8
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCC--eEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGH--KITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh--~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
|+||+|+..++. + -+.++.+.|.+.+| +|..+.+.... ...++.| +.+..++. .. .
T Consensus 1 m~rI~vl~SG~g-~--~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~g-----Ip~~~~~~-------~~---~ 62 (216)
T 2ywr_A 1 MLKIGVLVSGRG-S--NLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHN-----VECKVIQR-------KE---F 62 (216)
T ss_dssp CEEEEEEECSCC-H--HHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHT-----CCEEECCG-------GG---S
T ss_pred CCEEEEEEeCCc-H--HHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcC-----CCEEEeCc-------cc---c
Confidence 358888866643 2 46777888888888 77666554322 2233344 66554430 00 0
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+ .+...+.+.+.|++.+||+||+= + ......+-+.....++.++++.
T Consensus 63 ~~------------r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL 112 (216)
T 2ywr_A 63 PS------------KKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSL 112 (216)
T ss_dssp SS------------HHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHTTSTTCEEEEESSC
T ss_pred cc------------hhhhhHHHHHHHHhcCCCEEEEeCchhhCCHHHHhhccCCeEEEcCCc
Confidence 00 11233456778889999999988 6 5555556666666778777653
No 66
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=84.52 E-value=4.1 Score=37.01 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
+--=+..|++.|++.| +|+++.++..+..+-..-.....+++..++.. +. .. ......+.+...+
T Consensus 12 ~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg~g~siTl~~pl~~~~~~~~---~~-~~-~~v~GTPaDCV~l--------- 76 (280)
T 1l5x_A 12 HSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGITLHKPLRMYEVDLC---GF-RA-IATSGTPSDTVYL--------- 76 (280)
T ss_dssp TCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCCCSSCBCEEEEECS---SS-EE-EEESSCHHHHHHH---------
T ss_pred CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC---CC-ce-EEECCcHHHHHHH---------
Confidence 3344788999999988 99999999987766332223334566555310 00 00 1122222221111
Q ss_pred HHHHHHHHhCCCcEEEEc-----------C----ccchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYD-----------I----AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D-----------~----~~~~~~~A~~~giP~v~~~~~ 146 (471)
.+..+ ..+||+||+- . +..|+.-|..+|||.|.++..
T Consensus 77 -al~~l--~~~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 77 -ATFGL--GRKYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp -HHHHH--TSCCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred -HHhcC--CCCCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 12222 3589999973 1 222333445699999999864
No 67
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=83.15 E-value=11 Score=33.51 Aligned_cols=104 Identities=12% Similarity=0.122 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCC-CCCCCCCCCCCCCChhhHHHHHHHHHHh
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHV-DGLPAGAETASDVPMSSINLLVIAMDRC 105 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (471)
|--=+..|++.|++.| +|+++.++..+..+-..-.....+++..++.... ++. .. ......+.+...+-
T Consensus 12 ~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~~~~~~~-~~-~~v~GTPaDCV~la------- 81 (244)
T 2e6c_A 12 YSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAITIAHPVRAYPHPSPLHAPHF-PA-YRVRGTPADCVALG------- 81 (244)
T ss_dssp TCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCCCSSCBEEEECCCCTTSCCC-CE-EEEESCHHHHHHHH-------
T ss_pred CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEeccCcCCCCC-ce-EEEcCcHHHHHHHH-------
Confidence 3344788999999888 8999999998776533223334477766642100 000 00 11122222221111
Q ss_pred HHHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEecc
Q 012080 106 RGQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 106 ~~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~~ 146 (471)
.. + ..+||+||+-+ +..|+.-|..+|||.|.++..
T Consensus 82 l~-----l-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 130 (244)
T 2e6c_A 82 LH-----L-FGPVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSVP 130 (244)
T ss_dssp HH-----H-SCSCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEEC
T ss_pred Hc-----C-CCCCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEecc
Confidence 11 2 45899999741 233344456799999999753
No 68
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=82.99 E-value=10 Score=32.87 Aligned_cols=104 Identities=7% Similarity=0.050 Sum_probs=64.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
|+||+++-.++ |+ .+.++.++|.+. +|+|..+.+.... ...+..| +.+..++. . ..
T Consensus 3 m~ki~vl~sG~-g~--~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~g-----Ip~~~~~~-------~---~~ 64 (212)
T 3av3_A 3 MKRLAVFASGS-GT--NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAAREN-----VPAFVFSP-------K---DY 64 (212)
T ss_dssp CEEEEEECCSS-CH--HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTT-----CCEEECCG-------G---GS
T ss_pred CcEEEEEEECC-cH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcC-----CCEEEeCc-------c---cc
Confidence 46888876664 43 366777888877 7898777665322 2233344 66654430 0 00
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+ -+...+.+.+.|++.+||+||.= + ......+-......++.++++.
T Consensus 65 ~~------------~~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL 114 (212)
T 3av3_A 65 PS------------KAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSL 114 (212)
T ss_dssp SS------------HHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHTTTCEEEEESSC
T ss_pred cc------------hhhhHHHHHHHHHhcCCCEEEEchhhhhCCHHHHhhhcCCEEEEecCc
Confidence 00 11223456778889999999988 6 5666666677777788777654
No 69
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=82.40 E-value=6.7 Score=36.40 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh--------------ccCCCCCCCeEEEEecCCC
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL--------------QHFNLHPDLITLHPLTVPH 76 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~~ 76 (471)
+.+|+||+|+-.+..+ ....++|.++||+|..+.+...+..- ++.| +.+.. +
T Consensus 1 ~~~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~g-----Ipv~~-~--- 66 (317)
T 3rfo_A 1 SNAMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHG-----IPVLQ-P--- 66 (317)
T ss_dssp CCTTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHHHTT-----CCEEC-C---
T ss_pred CCCceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHHHcC-----CCEEc-c---
Confidence 3578999999766543 34567788889999888776543211 1111 32221 0
Q ss_pred CCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 77 VDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
+... .....+.|++.+||++|+= + ......+-+.....++.++++.
T Consensus 67 --------~~~~-----------------~~~~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl 114 (317)
T 3rfo_A 67 --------LRIR-----------------EKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASL 114 (317)
T ss_dssp --------SCTT-----------------SHHHHHHHHHHCCSEEEESSCCSCCCHHHHHSSTTCEEEEESSC
T ss_pred --------ccCC-----------------CHHHHHHHHhcCCCEEEEcCchhhCCHHHHhhCcCCEEEECCcc
Confidence 0000 0122456777899999988 6 5555556666666678887765
No 70
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=81.96 E-value=7.4 Score=36.44 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=36.8
Q ss_pred CCCCeEEEec-CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 12 SSAFPIVMLP-WFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 12 ~~~~~il~~~-~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
.++.+|+|++ -++.|-..-...+|..|+++|++|.++..+....
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 4556788874 4888999999999999999999999999886443
No 71
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=81.30 E-value=9 Score=33.25 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=63.5
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGA 84 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 84 (471)
|..+++||+++.++..+-+ .+|.+...+ .+++|..+.+.... +..++.| +.+..++. ..
T Consensus 1 ~~~~~~riavl~SG~Gsnl---~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~g-----Ip~~~~~~-------~~- 64 (215)
T 3tqr_A 1 MNREPLPIVVLISGNGTNL---QAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQAD-----IPTHIIPH-------EE- 64 (215)
T ss_dssp ---CCEEEEEEESSCCHHH---HHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTT-----CCEEECCG-------GG-
T ss_pred CCCCCcEEEEEEeCCcHHH---HHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcC-----CCEEEeCc-------cc-
Confidence 3456779998876644333 344444443 36888887764322 2344445 66665531 00
Q ss_pred CCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 85 ETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.. + -......+.+.|++.+||+||+= + ......+-+.....++.++++.
T Consensus 65 --~~----~--------r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL 115 (215)
T 3tqr_A 65 --FP----S--------RTDFESTLQKTIDHYDPKLIVLAGFMRKLGKAFVSHYSGRMINIHPSL 115 (215)
T ss_dssp --SS----S--------HHHHHHHHHHHHHTTCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSS
T ss_pred --cC----c--------hhHhHHHHHHHHHhcCCCEEEEccchhhCCHHHHhhccCCeEEeCccc
Confidence 00 0 11123567788999999999998 6 5666666677777778777654
No 72
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=80.51 E-value=4.3 Score=36.14 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhH
Q 012080 27 HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCR 106 (471)
Q Consensus 27 H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
|.-=+..|++.|++.| +|+++.++..+..+-..-.....+++..+... ++. .. ......+.+...+
T Consensus 12 ~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siTl~~pl~~~~~~~~--~~~-~~-~~v~GTPaDCV~l--------- 77 (247)
T 1j9j_A 12 QSKGIIVLAELLSEEH-EVFVVAPDKERSATGHSITIHVPLWMKKVFIS--ERV-VA-YSTTGTPADCVKL--------- 77 (247)
T ss_dssp TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCCSSCCCEEECCCS--SSE-EE-EEESSCHHHHHHH---------
T ss_pred CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCcccccCCCCeEEEEeccC--CCC-ce-EEECCcHHHHHHH---------
Confidence 3444788999999888 89999999987765332223333555554310 000 00 1112222221111
Q ss_pred HHHHHHHHhCCCcEEEEcC--------------ccchHHHHHHcCCceEEEec
Q 012080 107 GQVEAVIKAAKPRLLFYDI--------------AYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~--------------~~~~~~~A~~~giP~v~~~~ 145 (471)
.+..++ ..+||+||+-+ +..|+.-|..+|||.|.++.
T Consensus 78 -al~~l~-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 78 -AYNVVM-DKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp -HHHTTS-TTCCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred -HHHhhc-cCCCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 122222 24899999841 23334455679999999975
No 73
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=78.08 E-value=1.4 Score=42.82 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCCeEEEecCC---C--ccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWF---A--VGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~---~--~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..++||++++.. + .|=......+|++|+++||+|++++...
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 456899998432 2 1333568999999999999999999864
No 74
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=77.10 E-value=2.4 Score=42.81 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCeEEEecCC------CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWF------AVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~------~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..+|||||++.- +.|=-.-+-.|+++|+++||+|+++++..
T Consensus 7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y 53 (536)
T 3vue_A 7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRY 53 (536)
T ss_dssp -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECC
T ss_pred CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 346899999632 12322346688999999999999999653
No 75
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=76.51 E-value=9.1 Score=32.42 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=31.2
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|.|. +-++.|=..-...||..|+++|++|.++-.+...
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4444 4588899999999999999999999999776543
No 76
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=76.48 E-value=31 Score=29.76 Aligned_cols=102 Identities=10% Similarity=0.090 Sum_probs=63.1
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
||+++..+..+ -+.+|.+.+.+. +|+|..+.+.... ...++.| +.+..++. ....+
T Consensus 2 ri~vl~Sg~gs---nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~g-----Ip~~~~~~----------~~~~~ 63 (212)
T 1jkx_A 2 NIVVLISGNGS---NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAG-----IATHTLIA----------SAFDS 63 (212)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHTT-----CEEEECCG----------GGCSS
T ss_pred EEEEEEECCcH---HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHcC-----CcEEEeCc----------ccccc
Confidence 77777665443 366777777666 6898777655422 2234445 77665430 00000
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+...+.+.+.|++.+||+||+= + ......+-......++.++++.
T Consensus 64 ------------r~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSl 111 (212)
T 1jkx_A 64 ------------REAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSL 111 (212)
T ss_dssp ------------HHHHHHHHHHHHGGGCCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC
T ss_pred ------------hhhccHHHHHHHHhcCCCEEEEeChhhhCCHHHHhhccCCEEEEccCc
Confidence 11233567788899999999998 6 5556666677777788877654
No 77
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=75.95 E-value=10 Score=33.83 Aligned_cols=110 Identities=14% Similarity=0.232 Sum_probs=60.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCC-CCChh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETAS-DVPMS 93 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~ 93 (471)
+|||+.-=-+. |.-=+..|++.|++.| +|+++.++..+..+-..-.....+++..+. . .. .... ..+.+
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg~g~aiTl~~Pl~~~~~~----~---~~-~~v~~GTPaD 71 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSLTLESSLRTFTFD----N---GD-IAVQMGTPTD 71 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCCCSSCCEEEECT----T---SC-EEEETCCHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcCccCCcCCCCCeEEEEeC----C---CC-eEECCCCHHH
Confidence 46665532222 4445788899998876 999999999877653322223335555442 0 01 1122 22322
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc----------Cccch----HHHHHHcCCceEEEec
Q 012080 94 SINLLVIAMDRCRGQVEAVIKAAKPRLLFYD----------IAYWM----ATISKSLSIKCIKYNV 145 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D----------~~~~~----~~~A~~~giP~v~~~~ 145 (471)
...+ .+..++ ..+||+||+- ..+.| +.-|..+|||.|.++.
T Consensus 72 CV~l----------al~~ll-~~~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 126 (254)
T 2v4n_A 72 CVYL----------GVNALM-RPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL 126 (254)
T ss_dssp HHHH----------HHHTTS-SSCCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEE
T ss_pred HHHH----------HHhhcc-CCCCCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 2211 112223 3489999984 11222 2233458999999975
No 78
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=74.20 E-value=8.6 Score=35.88 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc--------hhhhccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA--------QTQLQHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
++||+|+. --+....+.++|.++||+|..+.+... ....++.+ +.+.... .+..
T Consensus 22 ~mrIvf~G-----~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~g-----Ipv~~~~-----~~~~--- 83 (329)
T 2bw0_A 22 SMKIAVIG-----QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDG-----VPVFKYS-----RWRA--- 83 (329)
T ss_dssp CCEEEEEC-----CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHT-----CCEEECS-----CCEE---
T ss_pred CCEEEEEc-----CcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHcC-----CCEEecC-----cccc---
Confidence 37999982 224445677899999999877765221 11222233 5544432 1100
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
. ....+.+.+.|++.+||++|+= + ......+-......++.++++..
T Consensus 84 --~--------------~~~~~~~~~~l~~~~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSLL 132 (329)
T 2bw0_A 84 --K--------------GQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLL 132 (329)
T ss_dssp --T--------------TEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEESSCT
T ss_pred --c--------------ccccHHHHHHHHhcCCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCcC
Confidence 0 0112345567888899999988 5 55555555666666788877653
No 79
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=73.86 E-value=20 Score=33.17 Aligned_cols=97 Identities=6% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh--------------hhccCCCCCCCeEEEEecCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT--------------QLQHFNLHPDLITLHPLTVPHVD 78 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~ 78 (471)
+++||+|+-.+. ......++|.++||+|..+.+...+. ..+..+ +.+.. +
T Consensus 2 ~~mrIvf~Gt~~-----fa~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~g-----Ipv~~-~----- 65 (314)
T 1fmt_A 2 ESLRIIFAGTPD-----FAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG-----LPVFQ-P----- 65 (314)
T ss_dssp CCCEEEEEECSH-----HHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTT-----CCEEC-C-----
T ss_pred CCCEEEEEecCH-----HHHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHHHcC-----CcEEe-c-----
Confidence 457999987653 33455677777899998777654321 111112 33321 0
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 79 GLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.. .. .+.+.+.|++.+||++|+= + ......+-......++.++++..
T Consensus 66 ---~~---~~-----------------~~~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSLL 114 (314)
T 1fmt_A 66 ---VS---LR-----------------PQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLL 114 (314)
T ss_dssp ---SC---SC-----------------SHHHHHHHHHTTCSEEEEESCCSCCCHHHHHSSTTCEEEEESSST
T ss_pred ---CC---CC-----------------CHHHHHHHHhcCCCEEEEeeccccCCHHHHhhccCCEEEEcCCcC
Confidence 00 00 1345667888899998887 6 55555566666677788877653
No 80
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=73.52 E-value=4.1 Score=32.74 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=34.0
Q ss_pred CeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 15 FPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 15 ~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
++++++ |.-.--.+--.+-++..|.++||+|++++++.....++-
T Consensus 7 m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLlev 53 (157)
T 1kjn_A 7 GKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQV 53 (157)
T ss_dssp CEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred eeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheec
Confidence 467776 333334555578889999999999999999998777654
No 81
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=73.36 E-value=4.6 Score=34.71 Aligned_cols=48 Identities=17% Similarity=0.019 Sum_probs=37.3
Q ss_pred CCCCCCeEEEecCCCccCHH-HHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 10 SSSSAFPIVMLPWFAVGHMT-PFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~-p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
|.-+..||++.-.|+ +..+ -...+.+.|+++|++|.++.++.....+.
T Consensus 3 m~l~~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i~ 51 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTVQTTDT 51 (201)
T ss_dssp CCCTTCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTTC
T ss_pred CCcCCCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHHH
Confidence 334456888876665 5555 78999999999999999999998766553
No 82
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=73.15 E-value=3.9 Score=35.42 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
++.||++.-.|+.|-.. ...+.+.|+++|++|.++.++.....+.
T Consensus 3 ~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~ 47 (209)
T 3zqu_A 3 GPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMA 47 (209)
T ss_dssp SCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 34688888778777666 8999999999999999999998777663
No 83
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=72.65 E-value=23 Score=30.88 Aligned_cols=153 Identities=7% Similarity=-0.019 Sum_probs=80.9
Q ss_pred hccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCch
Q 012080 266 KWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQM 345 (471)
Q Consensus 266 ~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~ 345 (471)
-|++-.+ +.++.|+.|.++ ...+..|...|..+.++-.. +.+.+.......++.+....-+.
T Consensus 25 ifl~L~g-k~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~----------~~~~l~~l~~~~~i~~i~~~~~~ 86 (223)
T 3dfz_A 25 VMLDLKG-RSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPT----------VSAEINEWEAKGQLRVKRKKVGE 86 (223)
T ss_dssp EEECCTT-CCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSS----------CCHHHHHHHHTTSCEEECSCCCG
T ss_pred cEEEcCC-CEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCC----------CCHHHHHHHHcCCcEEEECCCCH
Confidence 3555443 669999888664 34455566678877766331 22222222222233332222234
Q ss_pred hhhcccCcceeeccCCcchHHHHHh----hCCcEEeccccccchhhHH-----HHHHhhcceEEeecccCCcccHHHHHH
Q 012080 346 PILEHSSVGCFVSHCGFGSMWESLM----SDCQIVLVPHLGDQILNTR-----LLAEELKVAVEVEREENGWFSKESLCK 416 (471)
Q Consensus 346 ~lL~~~~v~~~ItHgG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~-----~v~~~~G~G~~l~~~~~~~~t~~~l~~ 416 (471)
+.|..+++ +|.--|.-.+.+.++ .|+|+-++ |.+..+. .+. +-++-+.+......-.-...|++
T Consensus 87 ~dL~~adL--VIaAT~d~~~N~~I~~~ak~gi~VNvv----D~p~~~~f~~Paiv~-rg~l~iaIST~G~sP~la~~iR~ 159 (223)
T 3dfz_A 87 EDLLNVFF--IVVATNDQAVNKFVKQHIKNDQLVNMA----SSFSDGNIQIPAQFS-RGRLSLAISTDGASPLLTKRIKE 159 (223)
T ss_dssp GGSSSCSE--EEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEE-ETTEEEEEECTTSCHHHHHHHHH
T ss_pred hHhCCCCE--EEECCCCHHHHHHHHHHHhCCCEEEEe----CCcccCeEEEeeEEE-eCCEEEEEECCCCCcHHHHHHHH
Confidence 55666776 888888766655544 46665332 3322221 111 22333444432211234466888
Q ss_pred HHHHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 417 AIKCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 417 ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
.|++++.. .-..+-+.+.++++.+++.
T Consensus 160 ~ie~~lp~---~~~~~~~~~~~~R~~vk~~ 186 (223)
T 3dfz_A 160 DLSSNYDE---SYTQYTQFLYECRVLIHRL 186 (223)
T ss_dssp HHHHHSCT---HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccH---HHHHHHHHHHHHHHHHHHH
Confidence 88888732 2336888888999998876
No 84
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=72.64 E-value=18 Score=33.89 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCCeEEEec-CCCccCHHHHHHHHHHHH--hCCCeEEEEeCCCch
Q 012080 12 SSAFPIVMLP-WFAVGHMTPFLHLSNKLA--EKGHKITILLPRKAQ 54 (471)
Q Consensus 12 ~~~~~il~~~-~~~~GH~~p~~~la~~L~--~rGh~Vt~~~~~~~~ 54 (471)
.+..+|+|++ -++.|-..-...+|..|+ ++|++|.++..+...
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~ 60 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH 60 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 4556788874 488899999999999999 899999999988543
No 85
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=72.25 E-value=23 Score=32.75 Aligned_cols=96 Identities=10% Similarity=0.085 Sum_probs=56.7
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh--------------hccCCCCCCCeEEEEecCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ--------------LQHFNLHPDLITLHPLTVPHVD 78 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~ 78 (471)
+++||+|+-.+ .......++|.++||+|..+.+...+.. .++.| +.+.. +
T Consensus 6 ~~mrivf~Gt~-----~fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~g-----Ipv~~-~----- 69 (318)
T 3q0i_A 6 QSLRIVFAGTP-----DFAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLALEHN-----VPVYQ-P----- 69 (318)
T ss_dssp -CCEEEEECCS-----HHHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHHHTT-----CCEEC-C-----
T ss_pred cCCEEEEEecC-----HHHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHHHcC-----CCEEc-c-----
Confidence 46899998665 3344566788889999988777543321 11122 33321 0
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 79 GLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.. .. .+++.+.|++.+||++|+= + ......+-......++.++++.
T Consensus 70 ---~~---~~-----------------~~~~~~~l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl 117 (318)
T 3q0i_A 70 ---EN---FK-----------------SDESKQQLAALNADLMVVVAYGLLLPKVVLDTPKLGCINVHGSI 117 (318)
T ss_dssp ---SC---SC-----------------SHHHHHHHHTTCCSEEEESSCCSCCCHHHHTSSTTCEEEEESSS
T ss_pred ---Cc---CC-----------------CHHHHHHHHhcCCCEEEEeCccccCCHHHHhhCcCCEEEeCCcc
Confidence 00 00 0245677888999999987 5 4544555555555578777764
No 86
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=71.88 E-value=31 Score=33.14 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=55.0
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
|..+..||+++..+-. .. -+.++.++.|++|+++.+....... ... ..-.++.++. ..+
T Consensus 1 M~~~~k~l~Il~~~~~--~~---~i~~aa~~lG~~vv~v~~~~~~~~~-~~~---~~d~~~~~~~------~~d------ 59 (425)
T 3vot_A 1 MTKRNKNLAIICQNKH--LP---FIFEEAERLGLKVTFFYNSAEDFPG-NLP---AVERCVPLPL------FED------ 59 (425)
T ss_dssp -CCCCCEEEEECCCTT--CC---HHHHHHHHTTCEEEEEEETTSCCCC-SCT---TEEEEEEECT------TTC------
T ss_pred CCCCCcEEEEECCChh--HH---HHHHHHHHCCCEEEEEECCCccccc-CHh---hccEEEecCC------CCC------
Confidence 4566778888865432 22 3567778889999988655432110 000 0123444430 000
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc--C-ccchHHHHHHcCCce
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD--I-AYWMATISKSLSIKC 140 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~giP~ 140 (471)
.+.....+.++.++.++|.|+.- . ...+..+++.+|+|.
T Consensus 60 ------------~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 60 ------------EEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp ------------HHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred ------------HHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 11123345666777899998864 2 445566789999984
No 87
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=71.14 E-value=17 Score=31.52 Aligned_cols=106 Identities=9% Similarity=0.041 Sum_probs=61.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchh---hhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQT---QLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
..++||+|+.++..+-+ .+|.+.+.+ .+++|..+.+..... ..++.| +.+..++.. . .
T Consensus 10 ~~~~ri~vl~SG~gsnl---~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~g-----Ip~~~~~~~-------~---~ 71 (215)
T 3da8_A 10 SAPARLVVLASGTGSLL---RSLLDAAVGDYPARVVAVGVDRECRAAEIAAEAS-----VPVFTVRLA-------D---H 71 (215)
T ss_dssp CSSEEEEEEESSCCHHH---HHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTT-----CCEEECCGG-------G---S
T ss_pred CCCcEEEEEEeCChHHH---HHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcC-----CCEEEeCcc-------c---c
Confidence 44678999877754333 344444433 346887776665422 334445 666554310 0 0
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. + -......+.+.|++.+||+||.= + ......+-......++.++++.
T Consensus 72 ~----~--------r~~~d~~~~~~l~~~~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpSL 121 (215)
T 3da8_A 72 P----S--------RDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPAL 121 (215)
T ss_dssp S----S--------HHHHHHHHHHHHHTTCCSEEEEEECCSCCCHHHHHHHTTTEEEEESSC
T ss_pred c----c--------hhhhhHHHHHHHHhhCCCEEEEcCchhhCCHHHHhhccCCeEEeCccc
Confidence 0 0 11124567788999999998887 6 5555566666666678777653
No 88
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=71.05 E-value=2.1 Score=40.90 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=32.9
Q ss_pred CCeEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 14 AFPIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 14 ~~~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
|++|++++. ++.|-..-...+|..|+++|++|.++.. ...
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~ 41 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP 41 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC
Confidence 467888754 7779999999999999999999999887 443
No 89
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=70.70 E-value=2.9 Score=39.47 Aligned_cols=43 Identities=28% Similarity=0.219 Sum_probs=36.0
Q ss_pred CCCCeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 12 SSAFPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 12 ~~~~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
.++..|+|+ .-++.|-..-...+|..|+++|++|.++..+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~ 66 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAH 66 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345667776 4488899999999999999999999999988743
No 90
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=70.22 E-value=49 Score=28.38 Aligned_cols=102 Identities=10% Similarity=0.086 Sum_probs=59.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCchh----hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQT----QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASD 89 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (471)
||+++..+..+- +.+|.+.+.+. +|+|..+.+..... ..+..| +.+..++. . ...+
T Consensus 2 riaVl~SG~Gs~---L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~g-----Ip~~~~~~-------~---~~~~ 63 (209)
T 1meo_A 2 RVAVLISGTGSN---LQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAG-----IPTRVINH-------K---LYKN 63 (209)
T ss_dssp EEEEEESSSCTT---HHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHTT-----CCEEECCG-------G---GSSS
T ss_pred eEEEEEECCchH---HHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHcC-----CCEEEECc-------c---ccCc
Confidence 677776664443 34455555554 79988877665332 233344 66554430 0 0000
Q ss_pred CChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 90 VPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+.....+.+.|++.+||+||+= + ......+-......++.+.++.
T Consensus 64 ------------r~~~~~~~~~~l~~~~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpSL 111 (209)
T 1meo_A 64 ------------RVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSL 111 (209)
T ss_dssp ------------HHHHHHHHHHHHHHTTCCEEEEESCCSCCCHHHHHHTTTSEEEEESSS
T ss_pred ------------hhhhhHHHHHHHHhcCCCEEEEcchhhhCCHHHHhhhcCCEEEEccCc
Confidence 11123456778889999998887 6 5555666677777778777653
No 91
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=68.60 E-value=5.9 Score=33.69 Aligned_cols=44 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
.||++.-.|+.|- +=...+.+.|+++|++|.++.++.....+..
T Consensus 2 k~IllgvTGs~aa-~k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 2 QKIALCITGASGV-IYGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CEEEEEECSSTTH-HHHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CEEEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 4888887788784 4688999999999999999999988877754
No 92
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=67.64 E-value=7.4 Score=32.59 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=34.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
.||++.-.++.|=. -...+.+.|+++|++|.++.++....++.
T Consensus 6 k~IllgvTGs~aa~-k~~~ll~~L~~~g~~V~vv~T~~A~~fi~ 48 (175)
T 3qjg_A 6 ENVLICLCGSVNSI-NISHYIIELKSKFDEVNVIASTNGRKFIN 48 (175)
T ss_dssp CEEEEEECSSGGGG-GHHHHHHHHTTTCSEEEEEECTGGGGGSC
T ss_pred CEEEEEEeCHHHHH-HHHHHHHHHHHCCCEEEEEECcCHHHHhh
Confidence 47888766665544 48899999999999999999998876663
No 93
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=67.45 E-value=32 Score=31.71 Aligned_cols=39 Identities=21% Similarity=0.130 Sum_probs=33.6
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..|+|+ .-++.|-..-...+|..|+++|++|.++..+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 466666 558889999999999999999999999998873
No 94
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=66.29 E-value=24 Score=30.49 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=62.2
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCc--h--hhhccCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKA--Q--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAE 85 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~--~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (471)
.++.||+++.++. ||. +.+|.+.+.+. +++|..+.+... . +..++.| +.+..++. ..
T Consensus 6 ~~~~ri~vl~SG~-gsn--l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~g-----Ip~~~~~~-------~~-- 68 (215)
T 3kcq_A 6 KKELRVGVLISGR-GSN--LEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYG-----IPTFVVKR-------KP-- 68 (215)
T ss_dssp -CCEEEEEEESSC-CHH--HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTT-----CCEEECCB-------TT--
T ss_pred CCCCEEEEEEECC-cHH--HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcC-----CCEEEeCc-------cc--
Confidence 4567888877664 443 45566666554 378887776432 1 2334445 66665531 00
Q ss_pred CCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 86 TASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.. ...+.+.|++.+||+||.= + ......+-+.....++.++++.
T Consensus 69 -~~-----------------~~~~~~~L~~~~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpSL 114 (215)
T 3kcq_A 69 -LD-----------------IEHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSL 114 (215)
T ss_dssp -BC-----------------HHHHHHHHHHTTCSEEEESSCCSCCCHHHHHHTTTSEEEEESSC
T ss_pred -CC-----------------hHHHHHHHHHhCCCEEEEeCCceEeCHHHHhhccCCeEEECccc
Confidence 00 1567788889999999988 6 5666666677777778777653
No 95
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=65.48 E-value=37 Score=29.18 Aligned_cols=104 Identities=10% Similarity=0.081 Sum_probs=61.9
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCc--h--hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKA--Q--TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~--~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
+.||+++.++. ||. +.+|.+.+.+. .++|..+.++.. . +..++.| +.+..++. ...
T Consensus 7 ~~ri~vl~SG~-gsn--l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~g-----Ip~~~~~~----------~~~ 68 (209)
T 4ds3_A 7 RNRVVIFISGG-GSN--MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAG-----IATQVFKR----------KDF 68 (209)
T ss_dssp CEEEEEEESSC-CHH--HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTT-----CCEEECCG----------GGS
T ss_pred CccEEEEEECC-cHH--HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcC-----CCEEEeCc----------ccc
Confidence 45888876664 433 55666666554 378887776432 1 2344445 66665431 000
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+ -......+.+.|++.+||+||.= + ......+-+.....++.++++.
T Consensus 69 ~~------------r~~~d~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHpSL 118 (209)
T 4ds3_A 69 AS------------KEAHEDAILAALDVLKPDIICLAGYMRLLSGRFIAPYEGRILNIHPSL 118 (209)
T ss_dssp SS------------HHHHHHHHHHHHHHHCCSEEEESSCCSCCCHHHHGGGTTCEEEEESSC
T ss_pred CC------------HHHHHHHHHHHHHhcCCCEEEEeccccCcCHHHHhhccCCeEEECCcc
Confidence 00 11123567788889999999988 6 5555666666666678777653
No 96
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=63.42 E-value=6.7 Score=33.55 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=35.6
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCchhhhc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKAQTQLQ 58 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~~~~~~ 58 (471)
+||++.-.|+.|-.. ...+.+.|+++ |++|.++.++.....+.
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~ 44 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIE 44 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhH
Confidence 378887767766655 99999999999 99999999998877664
No 97
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=62.35 E-value=32 Score=31.72 Aligned_cols=100 Identities=7% Similarity=0.082 Sum_probs=55.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCC---------CCeEEEEecCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHP---------DLITLHPLTVPHVDGLPAGA 84 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~ 84 (471)
++||+|+-.+..+ ....++|.++||+|..+.+...+..-+.....+ .++.+.. + ..
T Consensus 2 ~mrivf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~-~--------~~- 66 (314)
T 3tqq_A 2 SLKIVFAGTPQFA-----VPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ-P--------FS- 66 (314)
T ss_dssp CCEEEEEECSGGG-----HHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHHHTTCCEEC-C--------SC-
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC-c--------cc-
Confidence 3699999766554 345678888999998887754432111000000 0122211 0 00
Q ss_pred CCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 85 ETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.. .+.+.+.|++.+||++|+= + ......+-+.....++.++++.
T Consensus 67 --~~-----------------~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl 112 (314)
T 3tqq_A 67 --LR-----------------DEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVHASL 112 (314)
T ss_dssp --SS-----------------SHHHHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEEEESSC
T ss_pred --CC-----------------CHHHHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEEecCcc
Confidence 00 1245677888999998887 5 4555555555555578777764
No 98
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=62.13 E-value=48 Score=32.21 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
...|+++..++.|-..-+..||..|+++|++|.++..+.++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 345666666888999999999999999999999999887654
No 99
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=60.95 E-value=13 Score=29.57 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=34.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.+|++.+.++-.|-....-++..|..+|++|..++...
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~ 41 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLS 41 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 458999999989999999999999999999999887654
No 100
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=60.87 E-value=82 Score=28.48 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=63.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch---hhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ---TQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
.++.||+++.++. || -+..|.+...+. ..+|..+.+.... ...++.| +.+..+|..
T Consensus 86 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~g-----Ip~~~~~~~----------- 146 (287)
T 3nrb_A 86 TDRKKVVIMVSKF-DH--CLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGD-----IPFHYLPVT----------- 146 (287)
T ss_dssp TCCCEEEEEECSC-CH--HHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTT-----SCEEECCCC-----------
T ss_pred CCCcEEEEEEeCC-Cc--CHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcC-----CCEEEEecc-----------
Confidence 4577998887664 54 344555554433 3687777665432 2333333 777766511
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. .. -......+.+.|++.+||+||.= + ......+-+...-.++.++++.
T Consensus 147 ~----~~--------r~~~~~~~~~~l~~~~~Dlivlagym~il~~~~l~~~~~~~iNiHpSl 197 (287)
T 3nrb_A 147 P----AT--------KAAQESQIKNIVTQSQADLIVLARYMQILSDDLSAFLSGRCINIHHSF 197 (287)
T ss_dssp G----GG--------HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHHTTSEEEEESSC
T ss_pred C----cc--------hhhHHHHHHHHHHHhCCCEEEhhhhhhhcCHHHHhhccCCeEEECccc
Confidence 0 00 11123567788888999999988 6 5666667777777778777653
No 101
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=60.27 E-value=33 Score=32.58 Aligned_cols=88 Identities=14% Similarity=-0.020 Sum_probs=52.9
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC-chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK-AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
.++.+|+++..+.. .+.+++++++.|++|.++.... +........ .++.++. .
T Consensus 5 ~~~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad------~~~~~~~-------------~-- 58 (403)
T 4dim_A 5 YDNKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPNAHKPCLNLAD------EISYMDI-------------S-- 58 (403)
T ss_dssp -CCCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSSCCHHHHHHCS------EEEECCT-------------T--
T ss_pred cCCCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCCCCCcchhhCC------eEEEecC-------------C--
Confidence 45678999866654 3568999999999999886543 222121111 2233220 0
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc---C-ccchHHHHHHcCCc
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD---I-AYWMATISKSLSIK 139 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D---~-~~~~~~~A~~~giP 139 (471)
-.+.+.+++++.++|+|+.- . ......+++.+|+|
T Consensus 59 --------------d~~~l~~~~~~~~~d~v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 59 --------------NPDEVEQKVKDLNLDGAATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp --------------CHHHHHHHTTTSCCSEEECCSCSTTHHHHHHHHHHHTCS
T ss_pred --------------CHHHHHHHHHHcCCCEEEeCCcchhHHHHHHHHHHcCcC
Confidence 02345666777889999963 2 33344567788986
No 102
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=60.21 E-value=73 Score=26.43 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=43.3
Q ss_pred EEeccccCc-hh-hhcccCcceeeccCCcchHHH---HHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCccc
Q 012080 336 VVCGEWVEQ-MP-ILEHSSVGCFVSHCGFGSMWE---SLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFS 410 (471)
Q Consensus 336 v~~~~~~pq-~~-lL~~~~v~~~ItHgG~~s~~E---al~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t 410 (471)
.++++..++ .. +...++. .++--||.||+-| ++.+++|++.+|.+. .....+. ..-.....-. -+
T Consensus 91 ~i~~~~~~~Rk~~m~~~sda-~IvlpGg~GTL~E~~~al~~~kpV~~l~~~~---~~~gfi~-~~~~~~i~~~-----~~ 160 (176)
T 2iz6_A 91 PIVTGLGSARDNINALSSNV-LVAVGMGPGTAAEVALALKAKKPVVLLGTQP---EAEKFFT-SLDAGLVHVA-----AD 160 (176)
T ss_dssp EEECCCCSSSCCCCGGGCSE-EEEESCCHHHHHHHHHHHHTTCCEEEESCCH---HHHHHHH-HHCTTTEEEE-----SS
T ss_pred eEEcCCHHHHHHHHHHhCCE-EEEecCCccHHHHHHHHHHhCCcEEEEcCcc---cccccCC-hhhcCeEEEc-----CC
Confidence 344555554 23 3334444 4666788887655 567999999999832 1111222 2212212221 46
Q ss_pred HHHHHHHHHHHhc
Q 012080 411 KESLCKAIKCVMD 423 (471)
Q Consensus 411 ~~~l~~ai~~ll~ 423 (471)
++++.+.+.+.+.
T Consensus 161 ~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 161 VAGAIAAVKQLLA 173 (176)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776654
No 103
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=59.99 E-value=13 Score=34.70 Aligned_cols=42 Identities=7% Similarity=0.156 Sum_probs=35.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...|+.|-..-++.+|..++..|..|.|++.+.....+
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql 89 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQL 89 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 456667799999999999999999999999999998765543
No 104
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=59.87 E-value=9.9 Score=31.28 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=36.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++.+|++.+.++-.|-....-++..|..+|++|.+++....
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p 57 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT 57 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 56789999999999999999999999999999999876543
No 105
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=58.70 E-value=1.2e+02 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=29.5
Q ss_pred cCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 8 SSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+|..++.+|+++.. | .....+++++++.|++|..+....
T Consensus 5 ~pm~~~~~~ili~g~---g--~~~~~~~~a~~~~G~~v~~~~~~~ 44 (391)
T 1kjq_A 5 TALRPAATRVMLLGS---G--ELGKEVAIECQRLGVEVIAVDRYA 44 (391)
T ss_dssp CTTSTTCCEEEEESC---S--HHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCCCCCEEEEECC---C--HHHHHHHHHHHHcCCEEEEEECCC
Confidence 346667789999844 3 235678999999999998886654
No 106
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=58.18 E-value=12 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHhhhcCCCchhHHHHHHHH
Q 012080 428 VGNVVRRNHAKWKGTLVSPGFVSGYIDKFVQ 458 (471)
Q Consensus 428 ~~~~~~~~a~~l~~~~~~~~~~~~~i~~~~~ 458 (471)
.+.+++++...++.+++..|++...+..|..
T Consensus 3 swaefkqrlaaiktrlqalggseaelaafek 33 (73)
T 2a3d_A 3 SWAEFKQRLAAIKTRLQALGGSEAELAAFEK 33 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSGGGTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3568999999999999999887755444433
No 107
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=57.91 E-value=14 Score=31.90 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhcc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
+..||++.-.++.+-.. ...+.+.|+++| +|.++.++....++..
T Consensus 18 ~~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv~~ 62 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFLDK 62 (209)
T ss_dssp -CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTCCG
T ss_pred CCCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhcCH
Confidence 34689988778777655 899999999999 9999999988776643
No 108
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=57.77 E-value=11 Score=31.83 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=34.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQ 58 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~ 58 (471)
.||++.-.|+.|=. -...+.+.|+++|++|.++.++....++.
T Consensus 3 k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi~ 45 (181)
T 1g63_A 3 GKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFIN 45 (181)
T ss_dssp CCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTSC
T ss_pred CEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHHH
Confidence 36777666655544 67899999999999999999998876664
No 109
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=57.73 E-value=6.1 Score=35.78 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=38.1
Q ss_pred cCcceeeccCCcchHHHHHhh------CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 351 SSVGCFVSHCGFGSMWESLMS------DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 351 ~~v~~~ItHgG~~s~~Eal~~------GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+++ +|+=||=||+++++.. ++|++.+|.. .+|. +. .+.++++.+++++++..
T Consensus 36 ~D~--vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~G------------~lgf---l~-----~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 36 PEI--VISIGGDGTFLSAFHQYEERLDEIAFIGIHTG------------HLGF---YA-----DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CSE--EEEEESHHHHHHHHHHTGGGTTTCEEEEEESS------------SCCS---SC-----CBCGGGHHHHHHHHHTT
T ss_pred CCE--EEEEcCcHHHHHHHHHHhhcCCCCCEEEEeCC------------CCCc---CC-----cCCHHHHHHHHHHHHcC
Confidence 455 9999999999999875 8999999851 2221 11 15677788888888864
No 110
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=57.50 E-value=85 Score=28.41 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=63.2
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC---chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRK---AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAET 86 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (471)
.++.||+++.++ .|| -+.+|.++-.+. ..+|.++.+.. .....++.| +.+..+|.. ..
T Consensus 87 ~~~~ri~vl~Sg-~g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~g-----Ip~~~~~~~-----~~---- 149 (288)
T 3obi_A 87 ETRRKVMLLVSQ-SDH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGD-----IPFYHFPVN-----KD---- 149 (288)
T ss_dssp TSCEEEEEEECS-CCH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTT-----CCEEECCCC-----TT----
T ss_pred CCCcEEEEEEcC-CCC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcC-----CCEEEeCCC-----cc----
Confidence 457789888766 355 344555554332 24777666544 233334444 777776511 00
Q ss_pred CCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 87 ASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. -......+.+.|++.++|+||.= + ......+-+...-.++.++++.
T Consensus 150 ------~--------r~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~~iNiHpSl 198 (288)
T 3obi_A 150 ------T--------RRQQEAAITALIAQTHTDLVVLARYMQILSDEMSARLAGRCINIHHSF 198 (288)
T ss_dssp ------T--------HHHHHHHHHHHHHHHTCCEEEESSCCSCCCHHHHHHTTTSEEEEEEEC
T ss_pred ------c--------HHHHHHHHHHHHHhcCCCEEEhhhhhhhCCHHHHhhhcCCeEEeCccc
Confidence 0 11123567788888999999988 6 5666666777776778777653
No 111
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=56.99 E-value=11 Score=32.48 Aligned_cols=42 Identities=12% Similarity=-0.019 Sum_probs=30.4
Q ss_pred CCeEEEecCCCccCHHH-HHHHHHHHHhCCCeEEEEeCCCchhh
Q 012080 14 AFPIVMLPWFAVGHMTP-FLHLSNKLAEKGHKITILLPRKAQTQ 56 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p-~~~la~~L~~rGh~Vt~~~~~~~~~~ 56 (471)
..||++.-.|+ +..+- ...+.+.|+++|++|.++.++.....
T Consensus 5 ~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A~~v 47 (207)
T 3mcu_A 5 GKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTVQST 47 (207)
T ss_dssp TCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC-----
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHHHHH
Confidence 45888876665 45665 88999999999999999999986643
No 112
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=56.62 E-value=60 Score=29.71 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+.+.|++.+||++|+= + ......+-......++.++++.
T Consensus 66 ~~~~~l~~~~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL 107 (305)
T 2bln_A 66 LWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL 107 (305)
T ss_dssp HHHHHHHHTCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSC
T ss_pred HHHHHHHhcCCCEEEEeccccccCHHHHhcCcCCEEEecCCc
Confidence 35567888899998887 5 5555555566666678887764
No 113
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=56.21 E-value=15 Score=31.52 Aligned_cols=42 Identities=17% Similarity=-0.117 Sum_probs=36.9
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
++.+|++.+.++-.|-....-++..|..+|++|.+++.....
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~ 128 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEP 128 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 456899999999999999999999999999999998876433
No 114
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=54.61 E-value=17 Score=31.84 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=34.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+++|++..-|+.|-..-++.+|..|+++|++|.++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 568888888999999999999999999999998877664
No 115
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=54.21 E-value=25 Score=27.65 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=31.7
Q ss_pred CCeEEEe-cCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 14 AFPIVML-PWF--AVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 14 ~~~il~~-~~~--~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
+.+++|+ ..+ +.......+.+|...++.||+|+++....-..
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~ 59 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPX 59 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHH
Confidence 3466665 434 45688889999999999999999988776443
No 116
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=53.93 E-value=20 Score=28.25 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=26.4
Q ss_pred HHHHhCCCcEEEEc--C-ccchHHHHHHc-------CCceEEEecch
Q 012080 111 AVIKAAKPRLLFYD--I-AYWMATISKSL-------SIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D--~-~~~~~~~A~~~-------giP~v~~~~~~ 147 (471)
+.+++.+||+||.| + ..-|..+++.. .+|++.++...
T Consensus 51 ~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 51 PMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 34556689999999 3 66778877754 48888776544
No 117
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=53.88 E-value=22 Score=26.78 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ..-|..+.+.+ .+|++.++...
T Consensus 38 al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 38 ALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 34456677899999993 44566666643 57888776543
No 118
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=53.77 E-value=95 Score=28.30 Aligned_cols=105 Identities=9% Similarity=0.164 Sum_probs=65.3
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.++.||+++.++. || -+.+|.++-.+. +.+|..+.+.. .....++.| +.+..++.. .
T Consensus 103 ~~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~g-----Ip~~~~~~~------~----- 163 (302)
T 3o1l_A 103 AQKKRVVLMASRE-SH--CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWHD-----IPYYHVPVD------P----- 163 (302)
T ss_dssp TSCCEEEEEECSC-CH--HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTTT-----CCEEECCCC------S-----
T ss_pred CCCcEEEEEEeCC-ch--hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHcC-----CCEEEcCCC------c-----
Confidence 4567999887664 65 355566555433 47887776543 344555556 777776521 0
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+ . ......+.+.|++.+||+||.= + ......+-+...-.++.+.++.
T Consensus 164 ~~-r-----------~~~~~~~~~~l~~~~~DliVlagym~IL~~~~l~~~~~~~INiHpSl 213 (302)
T 3o1l_A 164 KD-K-----------EPAFAEVSRLVGHHQADVVVLARYMQILPPQLCREYAHQVINIHHSF 213 (302)
T ss_dssp SC-C-----------HHHHHHHHHHHHHTTCSEEEESSCCSCCCTTHHHHTTTCEEEEESSC
T ss_pred CC-H-----------HHHHHHHHHHHHHhCCCEEEHhHhhhhcCHHHHhhhhCCeEEeCccc
Confidence 00 0 1123467788889999999988 5 5555556666666778777653
No 119
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=53.56 E-value=8.5 Score=34.46 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=39.4
Q ss_pred ccCcceeeccCCcchHHHHHhh---CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 350 HSSVGCFVSHCGFGSMWESLMS---DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal~~---GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++ +|+=||=||+++++.. ++|++.++. + .+ |...+ +.++++.+++++++..
T Consensus 41 ~~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~-G-----------~~--Gfl~~------~~~~~~~~al~~i~~g 96 (258)
T 1yt5_A 41 TADL--IVVVGGDGTVLKAAKKAADGTPMVGFKA-G-----------RL--GFLTS------YTLDEIDRFLEDLRNW 96 (258)
T ss_dssp CCSE--EEEEECHHHHHHHHTTBCTTCEEEEEES-S-----------SC--CSSCC------BCGGGHHHHHHHHHTT
T ss_pred CCCE--EEEEeCcHHHHHHHHHhCCCCCEEEEEC-C-----------CC--CccCc------CCHHHHHHHHHHHHcC
Confidence 4566 9999999999999887 889999873 2 12 21111 5677899999888864
No 120
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=53.13 E-value=10 Score=29.58 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=25.0
Q ss_pred HHHHHHhCCCcEEEEc--C-ccchHHHHHH---cCCceEEEe
Q 012080 109 VEAVIKAAKPRLLFYD--I-AYWMATISKS---LSIKCIKYN 144 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~---~giP~v~~~ 144 (471)
-.+.+++.+||+||.| + ..-|..+++. .++|+|.++
T Consensus 45 Al~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 45 ALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 3445677899999999 3 5566776654 568876543
No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=52.97 E-value=19 Score=32.19 Aligned_cols=41 Identities=12% Similarity=-0.132 Sum_probs=36.4
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+..+|++.+.++-.|-....-++..|..+|++|.+++...
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~v 161 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDV 161 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC
Confidence 44678999999999999999999999999999999887553
No 122
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=52.89 E-value=91 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=23.7
Q ss_pred CCcEEE-Ec-C-ccchHHHHHHcCCceEEEecc
Q 012080 117 KPRLLF-YD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 117 ~~Dlvi-~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.||+|| .| . ...++.=|.++|||+|.+.-+
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDT 190 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADT 190 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCT
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 699955 55 4 777888899999999987644
No 123
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=52.75 E-value=1.3e+02 Score=27.10 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.++.||+++.++. || -+..|.+.-.+. ..+|..+.+.. .....++.| +.+..+|.. ..
T Consensus 88 ~~~~ri~vl~Sg~-g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~g-----Ip~~~~~~~------~~---- 149 (286)
T 3n0v_A 88 NHRPKVVIMVSKA-DH--CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWHK-----IPYYHFALD------PK---- 149 (286)
T ss_dssp TCCCEEEEEESSC-CH--HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHTT-----CCEEECCCB------TT----
T ss_pred CCCcEEEEEEeCC-CC--CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHcC-----CCEEEeCCC------cC----
Confidence 4567999887664 54 444555554332 47877776543 344555556 777776511 00
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. -......+.+.|++.++|+||.= + ......+-+...-.++.++++.
T Consensus 150 -----~--------r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl 198 (286)
T 3n0v_A 150 -----D--------KPGQERKVLQVIEETGAELVILARYMQVLSPELCRRLDGWAINIHHSL 198 (286)
T ss_dssp -----B--------HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEECS
T ss_pred -----C--------HHHHHHHHHHHHHhcCCCEEEecccccccCHHHHhhhcCCeEEecccc
Confidence 0 01123467788888999999988 6 5666666777776778777653
No 124
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=52.07 E-value=12 Score=32.29 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchhhhcc
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQTQLQH 59 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 59 (471)
.++.||++.-.++.+ .+-...+.+.|++ +|++|.++.++....++..
T Consensus 17 l~~k~IllgvTGsia-a~k~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~ 64 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVA-ALKLPLLVSKLLDIPGLEVAVVTTERAKHFYSP 64 (206)
T ss_dssp CSSEEEEEEECSSGG-GGTHHHHHHHHC---CEEEEEEECTGGGGSSCG
T ss_pred cCCCEEEEEEeChHH-HHHHHHHHHHHhcccCCEEEEEECHhHHHHhCH
Confidence 345688887767666 4456899999999 8999999999998776643
No 125
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=50.76 E-value=63 Score=30.45 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=33.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
-+++...++.|-..-++.+|..++.+|..|.|+..+...
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 466667788999999999999999999999999988644
No 126
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=50.41 E-value=54 Score=32.00 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 108 QVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
.+++++++.+||+||.... +..+|+++|||++.+
T Consensus 366 ~le~~i~~~~pDllig~~~--~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 366 DLEHAARAGQAQLVIGNSH--ALASARRLGVPLLRA 399 (458)
T ss_dssp HHHHHHHHHTCSEEEECTT--HHHHHHHTTCCEEEC
T ss_pred HHHHHHHhcCCCEEEEChh--HHHHHHHcCCCEEEe
Confidence 3667888889999999832 456899999999854
No 127
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=49.63 E-value=43 Score=28.89 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCeEEEecCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCCC-chhhh---ccCCCCCCCeEEEEecCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTP----FLHLSNKLAEK-GHKITILLPRK-AQTQL---QHFNLHPDLITLHPLTVPHVDGLPAGA 84 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p----~~~la~~L~~r-Gh~Vt~~~~~~-~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~ 84 (471)
|.+|+++.-...|.++| ++..|++|++. |-+|+.++-.. ..... ..+|. =+.+.+..
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~~Ga----d~v~~v~~---------- 68 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILPYGV----DKLHVFDA---------- 68 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGGGTC----SEEEEEEC----------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCC----CEEEEecC----------
Confidence 45788886655665554 67778888764 76766554332 22222 22341 12222220
Q ss_pred CCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcC----ccchHHHHHHcCCceEEEe
Q 012080 85 ETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDI----AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~----~~~~~~~A~~~giP~v~~~ 144 (471)
....... .+.....+.+++++.+||+|++-. .-.+..+|.++++|.+.-.
T Consensus 69 ~~~~~~~----------~~~~a~~l~~~i~~~~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv 122 (217)
T 3ih5_A 69 EGLYPYT----------SLPHTSILVNLFKEEQPQICLMGATVIGRDLGPRVSSALTSGLTADC 122 (217)
T ss_dssp GGGSSCC----------HHHHHHHHHHHHHHHCCSEEEEECSHHHHHHHHHHHHHTTCCCBCSC
T ss_pred cccccCC----------HHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHhCCCccceE
Confidence 0011100 122334556677777999999883 3345568889999987443
No 128
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=48.40 E-value=35 Score=30.22 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=30.5
Q ss_pred CCCCCCeEEEecCCCc----------c-CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 10 SSSSAFPIVMLPWFAV----------G-HMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~----------G-H~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|...|.||+++..... | ...=++.--..|.++|++|+++++..
T Consensus 5 m~~~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred ccccCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4334678999744321 3 46667888899999999999999754
No 129
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=48.09 E-value=1.6e+02 Score=26.66 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCC--chhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRK--AQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
.++.||+++.++ .|| -+..|.+.-.+. ..+|..+.+.. .....++.| +.+..+|.. .
T Consensus 93 ~~~~ri~vl~Sg-~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~g-----Ip~~~~~~~-----------~ 153 (292)
T 3lou_A 93 AARPKVLIMVSK-LEH--CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQHG-----LPFRHFPIT-----------A 153 (292)
T ss_dssp TSCCEEEEEECS-CCH--HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHTT-----CCEEECCCC-----------S
T ss_pred CCCCEEEEEEcC-CCc--CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHcC-----CCEEEeCCC-----------c
Confidence 456789888766 365 355555554433 46877776553 344555666 788776511 0
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
. . -......+.+.|++.++|+||.= + ......+-+...-.++.++++.
T Consensus 154 ~----~--------r~~~~~~~~~~l~~~~~Dlivla~y~~il~~~~l~~~~~~~iNiHpSl 203 (292)
T 3lou_A 154 D----T--------KAQQEAQWLDVFETSGAELVILARYMQVLSPEASARLANRAINIHHSF 203 (292)
T ss_dssp S----C--------HHHHHHHHHHHHHHHTCSEEEESSCCSCCCHHHHHHTTTSEEEEEEEC
T ss_pred C----C--------HHHHHHHHHHHHHHhCCCEEEecCchhhCCHHHHhhhcCCeEEeCCCc
Confidence 0 0 01123467788888899999988 6 5666667777777778777653
No 130
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=47.29 E-value=31 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=32.8
Q ss_pred CCeEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWF-AVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~-~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+..|.+++.+ +.|=..-++.++..+..+|.+|.++.+...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 3457777665 889999999999999999999998865543
No 131
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.15 E-value=24 Score=30.44 Aligned_cols=44 Identities=14% Similarity=-0.069 Sum_probs=37.4
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
.++.+|++.+.++-.|-....-++..|..+|++|+.++..-..+
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e 133 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNE 133 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHH
Confidence 44679999999999999999999999999999999998765433
No 132
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=46.85 E-value=9.9 Score=32.41 Aligned_cols=43 Identities=5% Similarity=0.005 Sum_probs=34.4
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..||++.-.|+.|=. -...+.+.|.++|++|.++.++....++
T Consensus 8 ~k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi 50 (194)
T 1p3y_1 8 DKKLLIGICGSISSV-GISSYLLYFKSFFKEIRVVMTKTAEDLI 50 (194)
T ss_dssp GCEEEEEECSCGGGG-GTHHHHHHHTTTSSEEEEEECHHHHHHS
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHH
Confidence 348888776766655 4789999999999999999999877665
No 133
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=46.33 E-value=35 Score=25.72 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=30.7
Q ss_pred CeEEEe-cCC--CccCHHHHHHHHHHHHhC-CC-eEEEEeCCCchhhh
Q 012080 15 FPIVML-PWF--AVGHMTPFLHLSNKLAEK-GH-KITILLPRKAQTQL 57 (471)
Q Consensus 15 ~~il~~-~~~--~~GH~~p~~~la~~L~~r-Gh-~Vt~~~~~~~~~~~ 57 (471)
.+++++ ..+ +.......+.+|..+.+. || +|+++....-....
T Consensus 2 ~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~ 49 (117)
T 1jx7_A 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAG 49 (117)
T ss_dssp CEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHH
Confidence 356665 333 334677789999999999 99 99998887754433
No 134
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=46.32 E-value=37 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|+ ..-|..+++.+ .+|++.++...
T Consensus 41 l~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 41 LQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 3455667899999993 44566665532 57888776543
No 135
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=46.26 E-value=28 Score=27.12 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=25.1
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc---------CCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL---------SIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~---------giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|+ ..-|..+++.+ .+|.+.++...
T Consensus 51 l~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 51 LDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 3445567899999993 44566666543 27888776543
No 136
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=45.90 E-value=1.4e+02 Score=27.86 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=31.3
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
++++-.++.|=..-++.++..+...|..|.|+..+...
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 45556688899999999999999999999999887643
No 137
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=45.25 E-value=15 Score=33.64 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=27.5
Q ss_pred ccCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 7 CSSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 7 ~~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.+.|..++.+|.|+-.+..|+ .+|..|+++||+|+++-..
T Consensus 8 ~~~~~~~~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 8 ASAKKIIVKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp ----CCCCCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred cccccccCCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 344556667899886665554 5888999999999887554
No 138
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=44.98 E-value=37 Score=25.34 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCcEEEEcC---ccchHHHHHH----cCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYDI---AYWMATISKS----LSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~---~~~~~~~A~~----~giP~v~~~~~~ 147 (471)
...+.+++.+||+||.|+ ..-|..+.+. .++|.+.++...
T Consensus 37 ~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 37 EAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 334456677899999993 3445555543 368887776543
No 139
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=44.93 E-value=34 Score=27.71 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+..+++++..+. | +.|++.+++.|.++|.+|+++ ....
T Consensus 22 ~~~~~llIaGG~-G-ItPl~sm~~~l~~~~~~v~l~-g~r~ 59 (158)
T 3lrx_A 22 KFGKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVTF 59 (158)
T ss_dssp CCSEEEEEEETT-H-HHHHHHHHHHHHHHTCEEEEE-EECB
T ss_pred CCCeEEEEEccC-c-HHHHHHHHHHHHhcCCcEEEE-EeCC
Confidence 346888887653 4 999999999999999999998 5543
No 140
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=44.42 E-value=1.5e+02 Score=25.35 Aligned_cols=104 Identities=9% Similarity=0.060 Sum_probs=61.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch----hhhccCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ----TQLQHFNLHPDLITLHPLTVPHVDGLPAGAETA 87 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (471)
|+||+++.++. |+ -+.+|.+...+. ..+|.++.++... ...++.| +.+..++. . ..
T Consensus 2 m~riavl~Sg~-Gs--nl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~g-----Ip~~~~~~-------~---~~ 63 (211)
T 3p9x_A 2 MKRVAIFASGS-GT--NAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHE-----IPVCALDP-------K---TY 63 (211)
T ss_dssp -CEEEEECCTT-CH--HHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTT-----CCEEECCG-------G---GS
T ss_pred CCEEEEEEeCC-ch--HHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcC-----CCEEEeCh-------h---hc
Confidence 56898887664 43 356666665433 2578777765321 2334444 66655430 0 00
Q ss_pred CCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecch
Q 012080 88 SDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~ 147 (471)
.+ -+.....+.+.|++.+||+||+= + ......+-+.....++.+.++.
T Consensus 64 ~~------------r~~~d~~~~~~l~~~~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpSL 113 (211)
T 3p9x_A 64 PS------------KEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSL 113 (211)
T ss_dssp SS------------HHHHHHHHHHHHHHTTCCEEEESSCCSCCCHHHHHHHTTSEEEEESSC
T ss_pred Cc------------hhhhHHHHHHHHHhcCCCEEEEeCchhhcCHHHHhhccCCeEEECCcc
Confidence 00 11224567788899999999988 6 5555666666666678777653
No 141
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=43.79 E-value=1.2e+02 Score=29.48 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=77.7
Q ss_pred ccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchh
Q 012080 267 WLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMP 346 (471)
Q Consensus 267 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~ 346 (471)
|++-. .+.++.++.|... ...+..|...+.++.++-.. +.+.+.......++.+..---+..
T Consensus 7 ~~~l~-~~~vlVvGgG~va-------~~k~~~L~~~ga~V~vi~~~----------~~~~~~~l~~~~~i~~~~~~~~~~ 68 (457)
T 1pjq_A 7 FCQLR-DRDCLIVGGGDVA-------ERKARLLLEAGARLTVNALT----------FIPQFTVWANEGMLTLVEGPFDET 68 (457)
T ss_dssp EECCB-TCEEEEECCSHHH-------HHHHHHHHHTTBEEEEEESS----------CCHHHHHHHTTTSCEEEESSCCGG
T ss_pred EEECC-CCEEEEECCCHHH-------HHHHHHHHhCcCEEEEEcCC----------CCHHHHHHHhcCCEEEEECCCCcc
Confidence 34433 3668899888764 33445555577777665331 222232222222333221112234
Q ss_pred hhcccCcceeeccCCcch-----HHHHHhhCCcEEe--ccccccchhhHHHHH-HhhcceEEeecccCCcccHHHHHHHH
Q 012080 347 ILEHSSVGCFVSHCGFGS-----MWESLMSDCQIVL--VPHLGDQILNTRLLA-EELKVAVEVEREENGWFSKESLCKAI 418 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s-----~~Eal~~GvP~v~--~P~~~DQ~~na~~v~-~~~G~G~~l~~~~~~~~t~~~l~~ai 418 (471)
.|..+++ +|.--|.-. ..+|-..|+|+-+ -|-..|...-+. +. +.+-+|++ .+.....-...|++.|
T Consensus 69 ~l~~~~l--Vi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~-~~~~~l~iaIs--T~Gksp~la~~ir~~i 143 (457)
T 1pjq_A 69 LLDSCWL--AIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSI-IDRSPLMVAVS--SGGTSPVLARLLREKL 143 (457)
T ss_dssp GGTTCSE--EEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEE-EEETTEEEEEE--CTTSCHHHHHHHHHHH
T ss_pred ccCCccE--EEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeE-EEeCCeEEEEE--CCCCChHHHHHHHHHH
Confidence 4556666 777777654 4455667999733 343333221110 01 12234544 3210123357788888
Q ss_pred HHHhccCchhhHHHHHHHHHHHhhhcCC
Q 012080 419 KCVMDKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 419 ~~ll~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
+++|.+ .-..+-+.+.++++.+++.
T Consensus 144 e~~l~~---~~~~~~~~~~~~R~~~~~~ 168 (457)
T 1pjq_A 144 ESLLPQ---HLGQVARYAGQLRARVKKQ 168 (457)
T ss_dssp HHHSCT---THHHHHHHHHHHHHHHHHH
T ss_pred HHhcch---hHHHHHHHHHHHHHHHHhh
Confidence 888843 1125667777777777655
No 142
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=43.78 E-value=65 Score=28.30 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhCCCcEEEEc
Q 012080 105 CRGQVEAVIKAAKPRLLFYD 124 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D 124 (471)
....+.++|++.+||+|++-
T Consensus 85 ~~~~l~~~ir~~~PdvV~t~ 104 (242)
T 2ixd_A 85 YIREIVKVIRTYKPKLVFAP 104 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEC
Confidence 45678888999999999884
No 143
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=43.60 E-value=22 Score=32.93 Aligned_cols=36 Identities=11% Similarity=-0.032 Sum_probs=28.9
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
..+.||.|+-.++.| +-.+|+.|+++||+|+..=..
T Consensus 2 ~~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 2 NAMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp -CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcCC
Confidence 356789999888887 557999999999999987543
No 144
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=43.10 E-value=59 Score=28.96 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEe
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPL 72 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (471)
.+++|||+.-=-+. |.-=+..|++.|.+ +|+|+++.++..+.-.-..-.....+++..+
T Consensus 9 ~~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg~g~siTl~~pl~~~~~ 67 (261)
T 3ty2_A 9 TPKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRSGASNSLTLNAPLHIKNL 67 (261)
T ss_dssp --CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCTTCTTCCCCSSCEEEEEC
T ss_pred CCCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCcCcccceecCCCeEEEEe
Confidence 45688877643333 55557888999977 8999999999887655332222333665553
No 145
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=43.02 E-value=19 Score=32.60 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=23.9
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|||++. |+.|-+- ..|++.|.++||+|+.++-..
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECCC
Confidence 466654 4445554 347899999999999987543
No 146
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=42.93 E-value=77 Score=26.75 Aligned_cols=39 Identities=5% Similarity=-0.032 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecch
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~~ 147 (471)
....+.+++.++|+||.|.. ...+|+++|+|.+.+.++.
T Consensus 132 ~~~i~~l~~~G~~vvVG~~~--~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 132 TTLISKVKTENIKIVVSGKT--VTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp HHHHHHHHHTTCCEEEECHH--HHHHHHHTTCEEEECCCCH
T ss_pred HHHHHHHHHCCCeEEECCHH--HHHHHHHcCCcEEEEecCH
Confidence 33444556668999999932 2668999999999877643
No 147
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=42.75 E-value=1e+02 Score=29.71 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=33.2
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCchh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAE-KGHKITILLPRKAQT 55 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~-rGh~Vt~~~~~~~~~ 55 (471)
-+++...|+.|-..-++.+|...+. .|..|.+++.+....
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~ 242 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAA 242 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHH
Confidence 4566677999999999999999886 488999999887654
No 148
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=42.31 E-value=38 Score=29.52 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=24.3
Q ss_pred cCcceeeccCCcchHHHHHhhCCcEEeccccc
Q 012080 351 SSVGCFVSHCGFGSMWESLMSDCQIVLVPHLG 382 (471)
Q Consensus 351 ~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~ 382 (471)
+++ ||+.||....+..- .++|+|-++..+
T Consensus 64 ~dV--IISRGgta~~Lr~~-~~iPVV~I~vs~ 92 (225)
T 2pju_A 64 CDA--IIAAGSNGAYLKSR-LSVPVILIKPSG 92 (225)
T ss_dssp CSE--EEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CeE--EEeCChHHHHHHhh-CCCCEEEecCCH
Confidence 555 99999999999975 689999999643
No 149
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=41.72 E-value=41 Score=26.15 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=28.9
Q ss_pred eEEEe-cCCCcc--CHHHHHHHHHHHHhCCCeE-EEEeCCCch
Q 012080 16 PIVML-PWFAVG--HMTPFLHLSNKLAEKGHKI-TILLPRKAQ 54 (471)
Q Consensus 16 ~il~~-~~~~~G--H~~p~~~la~~L~~rGh~V-t~~~~~~~~ 54 (471)
+++|+ ..+.+| .....+.+|..+.+.||+| .++...+-.
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV 44 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGV 44 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHH
Confidence 45554 444443 5678899999999999999 888877644
No 150
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=41.28 E-value=35 Score=35.62 Aligned_cols=113 Identities=9% Similarity=0.031 Sum_probs=74.4
Q ss_pred eccccCchhhhcccCcceeeccCCcchHHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeeccc----CCcccHHH
Q 012080 338 CGEWVEQMPILEHSSVGCFVSHCGFGSMWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREE----NGWFSKES 413 (471)
Q Consensus 338 ~~~~~pq~~lL~~~~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~----~~~~t~~~ 413 (471)
+.++.+-.++|..+++ .||=- .+.+.|.+..++|+|....-.|++.+ . .. |...+..+ .-.-+.++
T Consensus 603 ~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~----~-~r--g~y~d~~~~~pg~~~~~~~e 672 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDK----G-LR--GFYMNYMEDLPGPIYTEPYG 672 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTS----S-CC--SBSSCTTSSSSSCEESSHHH
T ss_pred CCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhh----c-cC--CcccChhHhCCCCeECCHHH
Confidence 4556666789988998 99973 46789999999999998765555432 1 12 23333211 12357788
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHhhhcCC--C-chhHHHHHHHHHHHhcc
Q 012080 414 LCKAIKCVMDKESEVGNVVRRNHAKWKGTLVSP--G-FVSGYIDKFVQNMRGLV 464 (471)
Q Consensus 414 l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~~--~-~~~~~i~~~~~~~~~~~ 464 (471)
|.++|++...++ ..|+++.+++.+.+... | .+++.++.+.+......
T Consensus 673 L~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~dg~as~ri~~~i~~~~~~~~ 722 (729)
T 3l7i_A 673 LAKELKNLDKVQ----QQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIKEQL 722 (729)
T ss_dssp HHHHHTTHHHHH----HHTHHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhccc----hhHHHHHHHHHHHhCCccCChHHHHHHHHHHhcCcCcc
Confidence 999998887532 27888888888887543 3 44466677776664443
No 151
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=41.24 E-value=86 Score=28.55 Aligned_cols=34 Identities=3% Similarity=-0.090 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhC-C-CeEEEEeCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEK-G-HKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~r-G-h~Vt~~~~~~ 52 (471)
++++|+++..+.. ..+++.|++. | ++|..+....
T Consensus 3 ~~~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~~ 38 (331)
T 2pn1_A 3 QKPHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCSP 38 (331)
T ss_dssp TCCEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESCT
T ss_pred ccceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCCC
Confidence 4468999855544 4788999876 6 8877775543
No 152
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=40.96 E-value=76 Score=28.62 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEE
Q 012080 42 GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLL 121 (471)
Q Consensus 42 Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlv 121 (471)
..+..++.++.+..+.+.+| ++...+. +...+ ... .......+.+.+++.+..+|
T Consensus 178 ~~~~~v~~H~af~Yf~~~yG-----l~~~~~~-----~~~~~----~ep-----------s~~~l~~l~~~ik~~~v~~i 232 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAKRFG-----LKQLGIS-----GISPE----QEP-----------SPRQLKEIQDFVKEYNVKTI 232 (286)
T ss_dssp SCCEEEEEESCCHHHHHHTT-----CEEEEEE-----CSCC-------C-----------CHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCchHHHHHHCC-----CeEeecc-----ccCCC----CCC-----------CHHHHHHHHHHHHHcCCCEE
Confidence 34445666777777778888 7766543 11111 011 12235677888899999999
Q ss_pred EEc--C-ccchHHHHHHcCCceEEEe
Q 012080 122 FYD--I-AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 122 i~D--~-~~~~~~~A~~~giP~v~~~ 144 (471)
+++ + .-.+-.+|+..|++.+.+.
T Consensus 233 f~e~~~~~~~~~~la~~~g~~v~~l~ 258 (286)
T 3gi1_A 233 FAEDNVNPKIAHAIAKSTGAKVKTLS 258 (286)
T ss_dssp EECTTSCTHHHHHHHHTTTCEEEECC
T ss_pred EEeCCCChHHHHHHHHHhCCeEEEec
Confidence 999 4 4445568999999988553
No 153
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=40.87 E-value=40 Score=23.55 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=33.5
Q ss_pred hCCcEEeccccccchh-hHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 371 SDCQIVLVPHLGDQIL-NTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~-na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
.|+|+|+.--.+.|.+ |...-+ ...-|+..+.- +...+|+|.+.+++.|.
T Consensus 50 ngkplvvfvngasqndvnefqne-akkegvsydvl--kstdpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNE-AKKEGVSYDVL--KSTDPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHH-HHHHTCEEEEE--ECCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHH-HHhcCcchhhh--ccCCHHHHHHHHHHHHH
Confidence 5788887766666654 344444 55666666641 23688999999998885
No 154
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=40.62 E-value=52 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecc
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVV 146 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~ 146 (471)
.+.+++.+||+||.|+ ...|..+.+.+ .+|++.++..
T Consensus 40 l~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 40 LEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 3455667899999993 34566655543 5788877654
No 155
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=39.92 E-value=27 Score=29.69 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=24.5
Q ss_pred CcceeeccCCcchHHHHHhhCCcEEeccccc
Q 012080 352 SVGCFVSHCGFGSMWESLMSDCQIVLVPHLG 382 (471)
Q Consensus 352 ~v~~~ItHgG~~s~~Eal~~GvP~v~~P~~~ 382 (471)
.+++||+.||....+... .++|+|-+|..+
T Consensus 51 ~~dVIISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 51 EVDAIISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp TCSEEEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeEEEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 334499999999999975 689999999754
No 156
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=39.63 E-value=45 Score=30.13 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCCCeEEEe-cCCCccCHHH--HHHHHHHHHhCCCeEEEE
Q 012080 12 SSAFPIVML-PWFAVGHMTP--FLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 12 ~~~~~il~~-~~~~~GH~~p--~~~la~~L~~rGh~Vt~~ 48 (471)
..++|||++ ..|-....+- .-.+.+.|.++||+|++.
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~ 59 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVS 59 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEE
Confidence 556799887 5554444443 334678889999999986
No 157
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=38.32 E-value=2.7e+02 Score=26.45 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.7
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+...+.+|+++.. | .-...++++|++.|++|..+.....
T Consensus 15 ~~~~~~~ili~g~---g--~~g~~~~~a~~~~G~~v~~v~~~~~ 53 (433)
T 2dwc_A 15 TTDSAQKILLLGS---G--ELGKEIAIEAQRLGVEVVAVDRYAN 53 (433)
T ss_dssp TSTTCCEEEEESC---S--HHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCCCCCEEEEECC---C--HHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3444568998844 3 2456788999999999988876543
No 158
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=38.16 E-value=34 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCeEEEecCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAV--G-HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~--G-H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+++|.-+. . -.++...|++.|.++|.+|.|+.++-.
T Consensus 30 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 72 (186)
T 2bru_C 30 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVA 72 (186)
T ss_dssp CSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSS
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457888876443 2 456889999999999999999998863
No 159
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=38.08 E-value=1.5e+02 Score=27.74 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
-+++.-.++.|-..-++.+|..++++|..|.|+..+...
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 456667788999999999999999999999999887643
No 160
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=37.96 E-value=55 Score=25.88 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..+++++..+. | +.|++.+++.|.++|.+|+++ ...
T Consensus 18 ~~~~llIaGG~-G-iaPl~sm~~~l~~~~~~v~l~-g~R 53 (142)
T 3lyu_A 18 FGKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVT 53 (142)
T ss_dssp CSEEEEEEETT-H-HHHHHHHHHHHHHTTCEEEEE-EEE
T ss_pred CCeEEEEECcC-c-HHHHHHHHHHHHhcCCcEEEE-EeC
Confidence 45888887553 3 899999999999999999998 543
No 161
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=37.42 E-value=53 Score=25.83 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=25.4
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-------cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ...|..+++. ..+|++.++...
T Consensus 43 al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 43 AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 33455677899999993 4455555543 357888776543
No 162
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=36.73 E-value=63 Score=23.83 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc----CCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL----SIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~----giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|. ...|..+++.+ .+|.+.++...
T Consensus 38 ~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 38 LREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 44455667899999993 33566655543 47777766543
No 163
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=36.40 E-value=94 Score=26.45 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=32.1
Q ss_pred hhhccCCCCCCcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEE
Q 012080 264 WDKWLGGFERSSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIA 309 (471)
Q Consensus 264 l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~ 309 (471)
+.+|+.....+.++||..++......+.+..+.++|+..|..+.+.
T Consensus 18 ~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~ 63 (206)
T 3l4e_A 18 FTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL 63 (206)
T ss_dssp HHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4456543334569999998875444566788889999999876553
No 164
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=36.38 E-value=32 Score=27.49 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=25.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.||+++- .|++- ..+++.|.++||+|+++...
T Consensus 4 ~~vlI~G---~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCG---HSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEEC---CCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 4777773 35554 67899999999999999875
No 165
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=36.22 E-value=2.1e+02 Score=32.99 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=35.5
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhh
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQ 56 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~ 56 (471)
.-+++.-.|+.|=..-++.+|...+.+|..|.|+..+.....
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP 425 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHH
Confidence 346666778999999999999999999999999998876543
No 166
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=35.89 E-value=64 Score=23.70 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecch
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
+.+++.+||+||.|+ ...|..+++.+ .+|.+.++...
T Consensus 41 ~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 41 EKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 344455899999993 33555555433 57888776554
No 167
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=35.78 E-value=49 Score=32.48 Aligned_cols=50 Identities=14% Similarity=0.227 Sum_probs=33.7
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEe
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPL 72 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (471)
.+++-+|++. .+=.-++.+|+.|.+.|+++. ++......++..| +.+..+
T Consensus 8 ~~i~~aLISV---sDK~glvelAk~L~~lGfeI~--ATgGTak~L~e~G-----I~v~~V 57 (523)
T 3zzm_A 8 RPIRRALISV---YDKTGLVDLAQGLSAAGVEII--STGSTAKTIADTG-----IPVTPV 57 (523)
T ss_dssp CCCCEEEEEE---SSCTTHHHHHHHHHHTTCEEE--ECHHHHHHHHTTT-----CCCEEH
T ss_pred ccccEEEEEE---eccccHHHHHHHHHHCCCEEE--EcchHHHHHHHcC-----Cceeec
Confidence 3446666665 344458899999999999854 6666666677666 555544
No 168
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=35.75 E-value=39 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=25.9
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
....+|+++-. |.+- ..+|+.|.++|++|+++....
T Consensus 17 ~~~~~v~IiG~---G~iG--~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 17 QKSKYIVIFGC---GRLG--SLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCCCEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESCG
T ss_pred cCCCcEEEECC---CHHH--HHHHHHHHhCCCeEEEEECCH
Confidence 44568888743 4443 457899999999999887654
No 169
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=35.69 E-value=39 Score=25.93 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=31.0
Q ss_pred CCCCCCCeEEEecCCC-ccCH-HHHHHHHHHHHhCC--CeEEEEeCCCchh
Q 012080 9 SSSSSAFPIVMLPWFA-VGHM-TPFLHLSNKLAEKG--HKITILLPRKAQT 55 (471)
Q Consensus 9 ~~~~~~~~il~~~~~~-~GH~-~p~~~la~~L~~rG--h~Vt~~~~~~~~~ 55 (471)
+|+.+ ++++|+-.-+ .-.. +..+..|...+++| |+|.++.......
T Consensus 3 ~~~~~-~K~~ivi~s~d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~ 52 (117)
T 2fb6_A 3 AMSAN-DKLTILWTTDNKDTVFNMLAMYALNSKNRGWWKHINIILWGASVK 52 (117)
T ss_dssp CSSTT-SEEEEEECCCCHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHH
T ss_pred ccccC-CeEEEEEEcCChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeee
Confidence 35555 6777764332 2232 45788899999999 8999988777443
No 170
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=35.28 E-value=71 Score=23.98 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=24.2
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-------cCCceEEEecc
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVV 146 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~ 146 (471)
..+.+++.+||+||.|. ...|..+.+. .++|++.++..
T Consensus 39 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 39 GLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 34455667899999993 4445554432 26788877654
No 171
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=35.13 E-value=1.7e+02 Score=23.26 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=53.7
Q ss_pred CeEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVG---HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVP 91 (471)
Q Consensus 15 ~~il~~~~~~~G---H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (471)
..++++++++.+ .-.-+..+++.|.+.+.++.+++...... ..+.++.+..+- +
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~------~~~~~v~~~~~~-----------------~ 77 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPD------TLGLNTRLYKWI-----------------P 77 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCT------TCCTTEEEESSC-----------------C
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcc------cCCCcEEEecCC-----------------C
Confidence 356777777776 45566778888887788888887654321 112235443210 0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEec
Q 012080 92 MSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~ 145 (471)
. .+++.....|++|+.-......-|-.+|+|.|.+..
T Consensus 78 ~-----------------~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~ 114 (170)
T 2o6l_A 78 Q-----------------NDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPL 114 (170)
T ss_dssp H-----------------HHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCC
T ss_pred H-----------------HHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccc
Confidence 0 012211356999987323344556679999997643
No 172
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=34.84 E-value=72 Score=30.72 Aligned_cols=34 Identities=9% Similarity=-0.025 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCcEEEEcC-cc---chHHHHHHcCCceE
Q 012080 108 QVEAVIKAAKPRLLFYDI-AY---WMATISKSLSIKCI 141 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~-~~---~~~~~A~~~giP~v 141 (471)
.+.+++++.++|+|+... .+ ......+.+|+|++
T Consensus 58 ~l~~~a~~~~id~vv~g~e~~l~~~~~~~l~~~Gi~~~ 95 (431)
T 3mjf_A 58 GLLAFAQSHDIGLTIVGPEAPLVIGVVDAFRAAGLAIF 95 (431)
T ss_dssp HHHHHHHHTTEEEEEECSHHHHHTTHHHHHHHTTCCEE
T ss_pred HHHHHHHHhCcCEEEECCchHHHHHHHHHHHhcCCCee
Confidence 455566777899999763 22 23445667899987
No 173
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.79 E-value=62 Score=24.14 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCcEEEEc--C-ccchHHHHHH-------cCCceEEEecc
Q 012080 108 QVEAVIKAAKPRLLFYD--I-AYWMATISKS-------LSIKCIKYNVV 146 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~-------~giP~v~~~~~ 146 (471)
...+.+++.+||+||.| + ...|..+++. ..+|++.++..
T Consensus 38 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 38 DALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 44455667789999999 3 4456555543 34677766543
No 174
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=34.62 E-value=3e+02 Score=31.77 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=36.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
..-|++.-.|+.|-..-++.+|..+..+|..|.|+..+.....+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql 775 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 775 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH
Confidence 34577778899999999999999999999999999888765433
No 175
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=34.38 E-value=86 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=24.0
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecc
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVV 146 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~ 146 (471)
..+.+++.+||+||.|. ...|..+.+.+ .+|.+.++..
T Consensus 37 a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 37 ALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 33455667899999993 33455555432 4777777654
No 176
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=34.34 E-value=34 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.6
Q ss_pred CCCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++++++.+ +-++.|-..-...||..|+++|++|.++=.+..
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 34455544 447778999999999999999999999866653
No 177
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=34.33 E-value=59 Score=24.26 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=24.9
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|+ ...|..+.+.+ .+|.+.++...
T Consensus 40 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 40 LAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp HHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3455667899999993 33556555443 57888776543
No 178
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.28 E-value=62 Score=25.27 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEc--C-ccchHHHHHHc-----CCceEEEecch
Q 012080 107 GQVEAVIKAAKPRLLFYD--I-AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
....+.+++.+||+||.| + ...+..+.+.+ .+|++.++...
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
No 179
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=34.00 E-value=61 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecch
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
+.+++.+||+||.|+ ...|..+++.+ .+|.+.++...
T Consensus 41 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 41 DIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 344455899999993 33455555433 57888776543
No 180
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=33.68 E-value=52 Score=28.55 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=27.8
Q ss_pred CeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 15 FPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 15 ~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
++.+|+ +..+.|-..-...|++.|+++|.+|.++
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 344444 4467799999999999999999999885
No 181
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=33.66 E-value=61 Score=24.57 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=24.7
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ..-|..+.+.+ .+|.+.++...
T Consensus 41 al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 41 AMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 34455566899999993 33456555442 47887776543
No 182
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=33.44 E-value=46 Score=29.06 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=30.9
Q ss_pred CeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+++.+ +-++.|-..-...||..|+++|++|.++=.+.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455555 44778999999999999999999999986654
No 183
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=33.26 E-value=69 Score=24.40 Aligned_cols=39 Identities=3% Similarity=-0.051 Sum_probs=25.1
Q ss_pred HHHHHHhCCCcEEEEc--C-ccchHHHHHH-------cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYD--I-AYWMATISKS-------LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~-------~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.| + ...|..+.+. ..+|++.++...
T Consensus 42 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 42 ALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 3445566789999999 3 4456655543 256777766544
No 184
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=33.11 E-value=66 Score=25.11 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=25.0
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ...|..+.+. ..+|+|.++...
T Consensus 50 a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 50 ALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 33455667899999993 4445555543 357887776543
No 185
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.10 E-value=70 Score=24.41 Aligned_cols=39 Identities=18% Similarity=0.114 Sum_probs=25.4
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc----CCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL----SIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~----giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ...|..+++.+ .+|.+.++...
T Consensus 40 al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 40 AIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 33455567899999993 33566655543 57888776543
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=32.72 E-value=2.8e+02 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=34.4
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
-+++.-.|+.|-..-++.+|...+.+|..|.|+..+....
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~ 424 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH
Confidence 4566677899999999999999999999999999887554
No 187
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=32.52 E-value=66 Score=24.99 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCcEEEEc--C-ccchHHHHHH-----cCCceEEEecch
Q 012080 107 GQVEAVIKAAKPRLLFYD--I-AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
....+.+++.+||+||.| + ...+..+++. ..+|++.++...
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 104 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFK 104 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 344556677789999999 3 4456665553 257877776544
No 188
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=32.48 E-value=53 Score=28.21 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=30.6
Q ss_pred CeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.+++.+ .-++.|-..-...||..|+++|++|.++=.+.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 344444 44778999999999999999999999986654
No 189
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=32.27 E-value=77 Score=23.15 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=23.8
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHH----cCCceEEEecch
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKS----LSIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~----~giP~v~~~~~~ 147 (471)
+.+++.+||+||.|+ ...|..+++. ..+|.+.++...
T Consensus 39 ~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 39 EQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 344556899999993 3345555543 468888776544
No 190
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=32.22 E-value=1.1e+02 Score=28.30 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=67.0
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-.+++|.++ +.+++.++..+.+++.. ... ..+... ..++ .+....++|+.+++
T Consensus 142 ~tvGIiG~G~IG-------~~va~~~~~fg~~v~~~-d~~---------~~~~~~----~~~~---~~~~l~ell~~sDi 197 (334)
T 3kb6_A 142 LTLGVIGTGRIG-------SRVAMYGLAFGMKVLCY-DVV---------KREDLK----EKGC---VYTSLDELLKESDV 197 (334)
T ss_dssp SEEEEECCSHHH-------HHHHHHHHHTTCEEEEE-CSS---------CCHHHH----HTTC---EECCHHHHHHHCSE
T ss_pred cEEEEECcchHH-------HHHHHhhcccCceeeec-CCc---------cchhhh----hcCc---eecCHHHHHhhCCE
Confidence 458899999986 34555555568887654 210 111111 1122 25677899999998
Q ss_pred ceeeccCCcchHHHHHhhCCcEEeccccc--cchhhHHHHHHhhcceE-EeecccCCcccHHHHHHHHHH
Q 012080 354 GCFVSHCGFGSMWESLMSDCQIVLVPHLG--DQILNTRLLAEELKVAV-EVEREENGWFSKESLCKAIKC 420 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~-~l~~~~~~~~t~~~l~~ai~~ 420 (471)
++-|+ |+.. ....|+..+. .++=|. .+...+.+.+..+.|.+|+++
T Consensus 198 --vslh~------------------Plt~~T~~li~~~~l~-~mk~~a~lIN~aRG~iVde~aL~~aL~~ 246 (334)
T 3kb6_A 198 --ISLHV------------------PYTKETHHMINEERIS-LMKDGVYLINTARGKVVDTDALYRAYQR 246 (334)
T ss_dssp --EEECC------------------CCCTTTTTCBCHHHHH-HSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred --EEEcC------------------CCChhhccCcCHHHHh-hcCCCeEEEecCccccccHHHHHHHHHh
Confidence 87775 5543 4678899999 887764 455555578889999999873
No 191
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=32.20 E-value=2e+02 Score=23.29 Aligned_cols=84 Identities=11% Similarity=0.185 Sum_probs=44.7
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhccc-Cc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHS-SV 353 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~-~v 353 (471)
+.|-|-+||.+ +....++....|+..+.++-+.+-. .+ ..|+.+.+ |+... .+. .+
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~s-aH------R~p~~~~~-----------~~~~a---~~~~~~ 59 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGS-AH------KTAEHVVS-----------MLKEY---EALDRP 59 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECC-TT------TCHHHHHH-----------HHHHH---HTSCSC
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEc-cc------CCHHHHHH-----------HHHHh---hhcCCC
Confidence 35666677765 4455666777777788877655542 11 25554421 11110 111 13
Q ss_pred ceeeccCCcchHHHHHh---hCCcEEecccc
Q 012080 354 GCFVSHCGFGSMWESLM---SDCQIVLVPHL 381 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~---~GvP~v~~P~~ 381 (471)
++||.=.|...-+-++- .-+|+|.+|.-
T Consensus 60 ~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~ 90 (159)
T 3rg8_A 60 KLYITIAGRSNALSGFVDGFVKGATIACPPP 90 (159)
T ss_dssp EEEEEECCSSCCHHHHHHHHSSSCEEECCCC
T ss_pred cEEEEECCchhhhHHHHHhccCCCEEEeeCC
Confidence 34777666543333332 45788888853
No 192
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=32.20 E-value=35 Score=29.63 Aligned_cols=38 Identities=18% Similarity=0.031 Sum_probs=32.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++|+|..-++.|=..-...||..|+++|++|.++=.+.
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36888666888999999999999999999998885554
No 193
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=32.07 E-value=76 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.8
Q ss_pred CCCeEEEecCCCc-c-CHHHHHHHHHHHHh
Q 012080 13 SAFPIVMLPWFAV-G-HMTPFLHLSNKLAE 40 (471)
Q Consensus 13 ~~~~il~~~~~~~-G-H~~p~~~la~~L~~ 40 (471)
+.++||+--+.-+ | .+||...++++|..
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~ 31 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLED 31 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCS
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhcc
Confidence 4568888644333 3 78999999999975
No 194
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=31.97 E-value=23 Score=33.77 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=40.6
Q ss_pred chhhhcccCcceeeccCCcchHHHHHhh----CC-cEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHH
Q 012080 344 QMPILEHSSVGCFVSHCGFGSMWESLMS----DC-QIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAI 418 (471)
Q Consensus 344 q~~lL~~~~v~~~ItHgG~~s~~Eal~~----Gv-P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai 418 (471)
..++-..+++ +|+=||=||++.++.. ++ |++.+... .+ |...+ +..+++.++|
T Consensus 108 ~~~~~~~~Dl--VIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G------------~l--GFLt~------~~~~~~~~al 165 (388)
T 3afo_A 108 EQDIVNRTDL--LVTLGGDGTILHGVSMFGNTQVPPVLAFALG------------TL--GFLSP------FDFKEHKKVF 165 (388)
T ss_dssp HHHHHHHCSE--EEEEESHHHHHHHHHTTTTSCCCCEEEEECS------------SC--CSSCC------EEGGGHHHHH
T ss_pred hhhcccCCCE--EEEEeCcHHHHHHHHHhcccCCCeEEEEECC------------Cc--ccCCc------CChHHHHHHH
Confidence 3445556777 9999999999999754 67 78888631 22 21111 5567788888
Q ss_pred HHHhcc
Q 012080 419 KCVMDK 424 (471)
Q Consensus 419 ~~ll~~ 424 (471)
++++..
T Consensus 166 ~~il~g 171 (388)
T 3afo_A 166 QEVISS 171 (388)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 888864
No 195
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=31.90 E-value=59 Score=29.67 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=30.4
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN 61 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~ 61 (471)
++|+++-.|+.| ..+|..|.++||+|+++.... .+.+.+.|
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g 43 (312)
T 3hn2_A 3 LRIAIVGAGALG-----LYYGALLQRSGEDVHFLLRRD-YEAIAGNG 43 (312)
T ss_dssp -CEEEECCSTTH-----HHHHHHHHHTSCCEEEECSTT-HHHHHHTC
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcCc-HHHHHhCC
Confidence 489998777777 346889999999999998776 34454444
No 196
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=31.79 E-value=70 Score=25.22 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=29.6
Q ss_pred CCeEEEe-cCCCccC--HHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 14 AFPIVML-PWFAVGH--MTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 14 ~~~il~~-~~~~~GH--~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
|.+++|+ ..+-+|+ ..-.+.+|..+...||+|.++...+-..
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DGV~ 49 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVY 49 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHHHH
Confidence 4456665 4444554 4456888999999999999988776443
No 197
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.71 E-value=66 Score=24.11 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=23.6
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|. ...|..+.+. ..+|++.++...
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 43 ALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 34455677899999993 3344444443 257888776554
No 198
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=31.68 E-value=53 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=21.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 25 VGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 25 ~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
.|.+ -.++|++|.++|++|+++..+..
T Consensus 28 SG~m--G~aiA~~~~~~Ga~V~lv~~~~~ 54 (232)
T 2gk4_A 28 TGHL--GKIITETLLSAGYEVCLITTKRA 54 (232)
T ss_dssp CCHH--HHHHHHHHHHTTCEEEEEECTTS
T ss_pred CCHH--HHHHHHHHHHCCCEEEEEeCCcc
Confidence 6654 45689999999999999987653
No 199
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=31.44 E-value=61 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=30.1
Q ss_pred CCCCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 12 SSAFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 12 ~~~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
.+|.+.+|+ +....|=..-.+.|++.|+++|.+|.++
T Consensus 18 ~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 18 YFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp -CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 456677776 4466689999999999999999999887
No 200
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=31.39 E-value=1.7e+02 Score=26.53 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCC-CCC--CeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 012080 28 MTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNL-HPD--LITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDR 104 (471)
Q Consensus 28 ~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (471)
..-+.++++.|.++|++|.+.+.+...+..+.... .+. ......+. .. .
T Consensus 199 ~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~--------------g~--~------------ 250 (348)
T 1psw_A 199 HYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLA--------------GE--T------------ 250 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECT--------------TT--S------------
T ss_pred HHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEecc--------------Cc--C------------
Confidence 33688999999999999988776665443322110 000 00111111 00 0
Q ss_pred hHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEEecc
Q 012080 105 CRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 105 ~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~~~~ 146 (471)
...++.++++. -|++|+- ......+|..+|+|+|.+...
T Consensus 251 sl~e~~ali~~--a~l~I~~-Dsg~~HlAaa~g~P~v~lfg~ 289 (348)
T 1psw_A 251 QLDQAVILIAA--CKAIVTN-DSGLMHVAAALNRPLVALYGP 289 (348)
T ss_dssp CHHHHHHHHHT--SSEEEEE-SSHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHh--CCEEEec-CCHHHHHHHHcCCCEEEEECC
Confidence 12344456654 5888875 123355688899999988654
No 201
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=31.23 E-value=71 Score=23.58 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~ 146 (471)
+.+++.+||+||.|+ ..-|..+++.+ .+|.+.++..
T Consensus 39 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 39 SIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 344556899999993 34566555432 5777766543
No 202
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=31.11 E-value=66 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCCCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 12 SSAFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 12 ~~~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
.+.++.+|+ +....|=..-.+.|++.|+++|.+|.++
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 445566665 4456689999999999999999999887
No 203
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=30.87 E-value=69 Score=32.84 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCcEEEEc-C-ccchHHHHHHcCCceEEEecchh
Q 012080 108 QVEAVIKAAKPRLLFYD-I-AYWMATISKSLSIKCIKYNVVCA 148 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D-~-~~~~~~~A~~~giP~v~~~~~~~ 148 (471)
.+.+.|++.+||+||+= + ......+-......++.++++..
T Consensus 66 ~~~~~l~~~~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~slL 108 (660)
T 1z7e_A 66 LWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLL 108 (660)
T ss_dssp HHHHHHHHHCCSEEEEESCCSCCCHHHHTTCTTCEEEEESSST
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHhcCCCCeEEecCCcC
Confidence 34567778899998887 5 55566666666677888888744
No 204
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=30.73 E-value=92 Score=22.89 Aligned_cols=38 Identities=8% Similarity=0.048 Sum_probs=24.3
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHH----cCCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKS----LSIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~----~giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|+ ..-|..+++. ..+|.+.++...
T Consensus 40 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 40 HQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 3445567899999993 3345555544 357777776543
No 205
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=30.60 E-value=1e+02 Score=22.47 Aligned_cols=39 Identities=8% Similarity=0.091 Sum_probs=25.0
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ...|..+.+. ..+|++.++...
T Consensus 36 a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 36 ADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 34455667899999993 3345555543 257888776543
No 206
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=30.25 E-value=21 Score=32.76 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=37.1
Q ss_pred hhcccCcceeeccCCcchHHHHHhh----CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHh
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVM 422 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll 422 (471)
....+++ +|.-||=||+++++.. ++|++.++. + .+ |...+ +.++++.+++++++
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~-G-----------~~--gfl~~------~~~~~~~~~~~~i~ 129 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNL-G-----------RI--GFLAE------AEAEAIDAVLEHVV 129 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEEC-S-----------SC--CSSCS------EEGGGHHHHHHHHH
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeC-C-----------CC--ccCcc------cCHHHHHHHHHHHH
Confidence 4445676 9999999999999865 899999983 2 11 21111 45667788888877
Q ss_pred cc
Q 012080 423 DK 424 (471)
Q Consensus 423 ~~ 424 (471)
..
T Consensus 130 ~g 131 (307)
T 1u0t_A 130 AQ 131 (307)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 207
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=30.18 E-value=90 Score=24.70 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=29.6
Q ss_pred CCeEEEe-cCCCcc--CHHHHHHHHHHHHhCCCeE-EEEeCCCch
Q 012080 14 AFPIVML-PWFAVG--HMTPFLHLSNKLAEKGHKI-TILLPRKAQ 54 (471)
Q Consensus 14 ~~~il~~-~~~~~G--H~~p~~~la~~L~~rGh~V-t~~~~~~~~ 54 (471)
.++++|+ ..+-+| ...-.+.+|..+.+.||+| .++...+-.
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV 56 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGV 56 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHH
Confidence 4577775 555555 4455678899999999999 887777643
No 208
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}
Probab=30.15 E-value=2.1e+02 Score=26.18 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=37.3
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-++++|.++ ..++..+...|.+++..-+.... . +.+ .. . ..+....++++.+++
T Consensus 138 ktvGIiGlG~IG-------~~vA~~l~~~G~~V~~~dr~~~~-------~-~~~------~~-~-~~~~~l~ell~~aDv 194 (324)
T 3evt_A 138 QQLLIYGTGQIG-------QSLAAKASALGMHVIGVNTTGHP-------A-DHF------HE-T-VAFTATADALATANF 194 (324)
T ss_dssp CEEEEECCSHHH-------HHHHHHHHHTTCEEEEEESSCCC-------C-TTC------SE-E-EEGGGCHHHHHHCSE
T ss_pred CeEEEECcCHHH-------HHHHHHHHhCCCEEEEECCCcch-------h-HhH------hh-c-cccCCHHHHHhhCCE
Confidence 559999999997 45666666678887654221100 0 100 00 1 123455778888888
Q ss_pred ceeeccCC
Q 012080 354 GCFVSHCG 361 (471)
Q Consensus 354 ~~~ItHgG 361 (471)
++.|.-
T Consensus 195 --V~l~lP 200 (324)
T 3evt_A 195 --IVNALP 200 (324)
T ss_dssp --EEECCC
T ss_pred --EEEcCC
Confidence 877753
No 209
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=30.13 E-value=74 Score=24.11 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=42.4
Q ss_pred ccCcceeeccCCcch---------HHHHHhhCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHH
Q 012080 350 HSSVGCFVSHCGFGS---------MWESLMSDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKC 420 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s---------~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ 420 (471)
.+++ +|--.|..| +-.|...|+|+|++=.++.+. .-..++ +.+. ..+. .+.+.|.++|+.
T Consensus 38 ~~~~--vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~-~P~~l~-~~a~-~iV~------Wn~~~I~~aI~~ 106 (111)
T 1eiw_A 38 DADA--VIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLEN-VPPELE-AVSS-EVVG------WNPHCIRDALED 106 (111)
T ss_dssp SCSE--EEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSC-CCTTHH-HHCS-EEEC------SCHHHHHHHHHH
T ss_pred cCCE--EEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCc-CCHHHH-hhCc-eecc------CCHHHHHHHHHh
Confidence 4555 888888877 567888999999997666552 111134 2222 2222 789999999998
Q ss_pred Hhc
Q 012080 421 VMD 423 (471)
Q Consensus 421 ll~ 423 (471)
.+.
T Consensus 107 ~~~ 109 (111)
T 1eiw_A 107 ALD 109 (111)
T ss_dssp HHC
T ss_pred ccC
Confidence 764
No 210
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=30.00 E-value=2.4e+02 Score=23.43 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=68.2
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVG 354 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~ 354 (471)
|.|-|-+||.+ +....++....|+..+.++-+.+-. .+ ..|+.+.+-. -+. ..-.++
T Consensus 14 ~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~S-aH------R~p~~l~~~~-----------~~a---~~~g~~ 70 (183)
T 1o4v_A 14 PRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVS-AH------RTPDRMFEYA-----------KNA---EERGIE 70 (183)
T ss_dssp CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECC-TT------TCHHHHHHHH-----------HHT---TTTTCC
T ss_pred CeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEc-cc------CCHHHHHHHH-----------HHH---HhCCCc
Confidence 47777788875 4555667777777888887655542 11 2555443210 000 001122
Q ss_pred eeeccCCcc----hHHHHHhhCCcEEecccccc--chhhH-HHHHHhh--cceEE-eecccCCcccHHHHHHHHHHHhcc
Q 012080 355 CFVSHCGFG----SMWESLMSDCQIVLVPHLGD--QILNT-RLLAEEL--KVAVE-VEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 355 ~~ItHgG~~----s~~Eal~~GvP~v~~P~~~D--Q~~na-~~v~~~~--G~G~~-l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
+||.=.|.. ++.-++ .-+|+|.+|.-.. .-..+ .-+. +. |+.+. +..+ +-.+..-+...|- -+.|
T Consensus 71 ViIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~Id--~~~nAa~lAaqIl-a~~d 145 (183)
T 1o4v_A 71 VIIAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIV-QMPGGVPVATVAIN--NAKNAGILAASIL-GIKY 145 (183)
T ss_dssp EEEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHH-TCCTTCCCEECCTT--CHHHHHHHHHHHH-HTTC
T ss_pred EEEEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecC--CchHHHHHHHHHH-hcCC
Confidence 366655543 333333 5678888886432 11122 1233 44 53321 1110 1244444444443 3345
Q ss_pred CchhhHHHHHHHHHHHhhhcCC
Q 012080 425 ESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 425 ~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
+ .++++.+..++.+.+.
T Consensus 146 ~-----~l~~kL~~~r~~~~~~ 162 (183)
T 1o4v_A 146 P-----EIARKVKEYKERMKRE 162 (183)
T ss_dssp H-----HHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHH
Confidence 5 6777776666665544
No 211
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=29.89 E-value=27 Score=31.70 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.4
Q ss_pred hhcccCcceeeccCCcchHHHHHhh----CCcEEecc
Q 012080 347 ILEHSSVGCFVSHCGFGSMWESLMS----DCQIVLVP 379 (471)
Q Consensus 347 lL~~~~v~~~ItHgG~~s~~Eal~~----GvP~v~~P 379 (471)
+-..+++ +|+=||=||+++++.. ++|++.++
T Consensus 60 ~~~~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~ 94 (292)
T 2an1_A 60 IGQQADL--AVVVGGDGNMLGAARTLARYDINVIGIN 94 (292)
T ss_dssp HHHHCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBC
T ss_pred cccCCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEE
Confidence 3345666 9999999999999853 88999998
No 212
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=29.66 E-value=68 Score=29.95 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=20.6
Q ss_pred ccCcceeecc--CCcchHHHHHhhCCcEEec
Q 012080 350 HSSVGCFVSH--CGFGSMWESLMSDCQIVLV 378 (471)
Q Consensus 350 ~~~v~~~ItH--gG~~s~~Eal~~GvP~v~~ 378 (471)
+|++ +|+| .+.....-|-..|+|.+.+
T Consensus 102 ~pD~--Vi~d~~~~~~~~~aA~~~giP~v~~ 130 (402)
T 3ia7_A 102 PPDL--VVYDVFPFIAGRLLAARWDRPAVRL 130 (402)
T ss_dssp CCSE--EEEESTTHHHHHHHHHHHTCCEEEE
T ss_pred CCCE--EEECchHHHHHHHHHHhhCCCEEEE
Confidence 5776 8877 5556667778899999876
No 213
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=29.65 E-value=57 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=22.8
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+|++. |+.|.+- ..++++|.++||+|+.++-..
T Consensus 13 ~ilVt--GatG~iG--~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYIG--NHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTTH--HHHHHHHHHTTCCEEEEECTT
T ss_pred eEEEE--CCCchHH--HHHHHHHHHCCCcEEEEECCC
Confidence 56555 3334432 457889999999999887654
No 214
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=29.49 E-value=97 Score=23.09 Aligned_cols=39 Identities=5% Similarity=-0.096 Sum_probs=24.6
Q ss_pred HHHHHHhC-CCcEEEEc-C--c-cchHHHHHHc-----CCceEEEecch
Q 012080 109 VEAVIKAA-KPRLLFYD-I--A-YWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~-~~Dlvi~D-~--~-~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
..+.+++. +||+||.| . . ..+..+++.+ .+|++.++...
T Consensus 41 a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 41 AIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp HHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred HHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 33455565 89999999 3 2 4555555432 58888776543
No 215
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=29.30 E-value=40 Score=26.00 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.++|+++- .|.+-. .+|+.|.++||+|+++...
T Consensus 4 ~m~i~IiG---~G~iG~--~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAG---IGRVGY--TLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEEC---CSHHHH--HHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC---CCHHHH--HHHHHHHhCCCeEEEEECC
Confidence 35888873 365543 5789999999999988654
No 216
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.25 E-value=1e+02 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=17.8
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS 135 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~ 135 (471)
..+.+++.+||+||.|. ...+..+++.
T Consensus 42 a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 42 AGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp HHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 34455667899999993 4445665554
No 217
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=29.23 E-value=78 Score=24.32 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=22.9
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~ 146 (471)
+.+++.+||+||.|+ ...|..+++.+ .+|.+.++..
T Consensus 43 ~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 43 QIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCS
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 445566899999993 34566555443 4677766543
No 218
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=29.04 E-value=1.8e+02 Score=26.77 Aligned_cols=46 Identities=4% Similarity=-0.127 Sum_probs=35.6
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCch--hhhccCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEK--GHKITILLPRKAQ--TQLQHFN 61 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~r--Gh~Vt~~~~~~~~--~~~~~~~ 61 (471)
.+++.-.++.|-..-++.++..++++ |..|.|+.++... ..++++|
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lG 79 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMG 79 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhC
Confidence 46777778899999999999998886 8899999888643 2345555
No 219
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.04 E-value=38 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.+|+++-. |.+ -..+|+.|.++||+|+++-...
T Consensus 6 ~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECCH
Confidence 457877744 443 4578999999999999887654
No 220
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=29.00 E-value=55 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCCeEEEecCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVMLPWFAV--G-HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~~~~~~--G-H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
...+|+++|.-+. . -.++...|++.|.++|.+|.|+.++-.
T Consensus 22 ~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 65 (180)
T 1pno_A 22 NASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA 65 (180)
T ss_dssp TCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred hCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3457888876433 1 456889999999999999999998863
No 221
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.97 E-value=85 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=23.1
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecch
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
+.+++.+||+||.|+ ...|..+++.+ .+|.+.++...
T Consensus 42 ~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 42 QFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 344455899999993 33566555443 46777766543
No 222
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=28.77 E-value=43 Score=31.14 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=20.7
Q ss_pred hCCCcEEEEc-Ccc-chHHHHHHcCCceEEEe
Q 012080 115 AAKPRLLFYD-IAY-WMATISKSLSIKCIKYN 144 (471)
Q Consensus 115 ~~~~Dlvi~D-~~~-~~~~~A~~~giP~v~~~ 144 (471)
+++||+||.. ... -.....+.+|||++.+.
T Consensus 94 al~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~ 125 (346)
T 2etv_A 94 TLQPDVVFITYVDRXTAXDIQEXTGIPVVVLS 125 (346)
T ss_dssp HHCCSEEEEESCCHHHHHHHHHHHTSCEEEEC
T ss_pred cCCCCEEEEeCCccchHHHHHHhcCCcEEEEe
Confidence 4589999987 422 22234577899999764
No 223
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.71 E-value=97 Score=23.66 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCcEEEEcC---ccchHHHHHH-------cCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~~ 147 (471)
...+.+++.+||+||.|. ...|..+.+. .++|++.++...
T Consensus 42 ~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 42 KALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 344456677899999993 3345555543 347888776543
No 224
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=28.59 E-value=47 Score=28.95 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCCCeEEEecCCCc-c-CHHHHHHHHHHHHhC
Q 012080 12 SSAFPIVMLPWFAV-G-HMTPFLHLSNKLAEK 41 (471)
Q Consensus 12 ~~~~~il~~~~~~~-G-H~~p~~~la~~L~~r 41 (471)
.+|.+||+--+.-+ | -+||...++++|...
T Consensus 21 ~~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~ 52 (228)
T 4hps_A 21 QSMKTILVTAFDPFGGEAINPSWEAIKPLQGS 52 (228)
T ss_dssp CCCEEEEEEEECCCTTCSCCHHHHHHGGGTTC
T ss_pred CCCCEEEEEeccCCCCCCCChHHHHHHHhcCc
Confidence 34668888644333 3 789999999999865
No 225
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=28.44 E-value=87 Score=27.14 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=20.2
Q ss_pred CCeEEEecCCCc-c-CHHHHHHHHHHHHhC
Q 012080 14 AFPIVMLPWFAV-G-HMTPFLHLSNKLAEK 41 (471)
Q Consensus 14 ~~~il~~~~~~~-G-H~~p~~~la~~L~~r 41 (471)
|.+||+--++-+ | .+||...++++|.+.
T Consensus 2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 31 (223)
T 3ro0_A 2 EKKVLLTGFDPFGGETVNPSWEAVKRLNGA 31 (223)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHTTTC
T ss_pred CCEEEEEeCCCCCCCCCChHHHHHHHhccc
Confidence 457887644222 3 689999999999763
No 226
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=28.39 E-value=1e+02 Score=23.94 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=33.9
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 371 SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
..+|+|++--.. ......... +.|+--.+.+. ++.++|..+|+.++..
T Consensus 74 ~~~pii~ls~~~-~~~~~~~~~-~~g~~~~l~kP----~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 74 PDLPMILVTGHG-DIPMAVQAI-QDGAYDFIAKP----FAADRLVQSARRAEEK 121 (155)
T ss_dssp TTSCEEEEECGG-GHHHHHHHH-HTTCCEEEESS----CCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCC-ChHHHHHHH-hcCCCeEEeCC----CCHHHHHHHHHHHHHH
Confidence 478888885433 344556666 67775555542 8999999999999964
No 227
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=28.32 E-value=2.5e+02 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=25.0
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeC
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALK 311 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~ 311 (471)
+|.|-|=+||.+ +-...++....|+..+..+-+.+-
T Consensus 22 kp~V~IimGS~S--D~~v~~~a~~~L~~~gI~~e~~V~ 57 (181)
T 4b4k_A 22 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVV 57 (181)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CccEEEEECCHh--HHHHHHHHHHHHHHcCCCeeEEEE
Confidence 457777888876 345567777777778877765554
No 228
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=28.27 E-value=2.7e+02 Score=25.78 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=55.4
Q ss_pred CeEEEecCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVG----HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 15 ~~il~~~~~~~G----H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
..+++++.++.+ ....+..+++.|.+.+.+|.+++.......++ ..+.++.+..+-
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~---~~~~~v~~~~~~----------------- 291 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLG---TLPRNVRAVGWT----------------- 291 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGC---SCCTTEEEESSC-----------------
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhc---cCCCcEEEEccC-----------------
Confidence 457777777773 23447788889988899998888776443332 223345443210
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
.+.+++.. .|++|+.-......-|-.+|+|.|.+
T Consensus 292 -----------------~~~~ll~~--ad~~v~~~G~~t~~Eal~~G~P~v~~ 325 (398)
T 3oti_A 292 -----------------PLHTLLRT--CTAVVHHGGGGTVMTAIDAGIPQLLA 325 (398)
T ss_dssp -----------------CHHHHHTT--CSEEEECCCHHHHHHHHHHTCCEEEC
T ss_pred -----------------CHHHHHhh--CCEEEECCCHHHHHHHHHhCCCEEEc
Confidence 01122332 69999883333455677899999975
No 229
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=28.17 E-value=2.3e+02 Score=26.25 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=33.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
-++++-.++.|-..-++.++..+..+|..|.|+..+...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 466667788999999999999999999999999887643
No 230
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=28.05 E-value=77 Score=25.16 Aligned_cols=42 Identities=10% Similarity=0.156 Sum_probs=33.0
Q ss_pred eEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhh
Q 012080 16 PIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQL 57 (471)
Q Consensus 16 ~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++++ ..+..-.+++.+.+|...++.|++|+++.+..-...+
T Consensus 9 kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l 51 (144)
T 2qs7_A 9 KLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAI 51 (144)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHT
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHH
Confidence 55554 5556778999999999999999999999888755433
No 231
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=28.05 E-value=70 Score=28.55 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHHhCCCcEEEEcC-c------cchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDI-A------YWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~-~------~~~~~~A~~~giP~v~~~~~ 146 (471)
..+.+++++.+||+||+-. . ..+..+|..+|+|.+.....
T Consensus 102 ~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 102 RILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 3455566666899999983 3 27788999999999977654
No 232
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=28.04 E-value=59 Score=26.74 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=31.4
Q ss_pred CCeEEEecCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAV--G-HMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~--G-H~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+++|.-+. . -.++...|++.|.++|.+|.|+.++-.
T Consensus 22 A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 64 (184)
T 1d4o_A 22 ANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVA 64 (184)
T ss_dssp CSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457888876433 2 456889999999999999999998863
No 233
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=27.98 E-value=62 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=21.2
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-------cCCceEEEecc
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVV 146 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~ 146 (471)
..+.+++.+||+||.|+ ...|..+++. .++|++.++..
T Consensus 38 a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 38 ALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 33445566899999993 2333333332 45787777654
No 234
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=27.93 E-value=72 Score=25.03 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=26.4
Q ss_pred CeEEEecCCCccCHHHH-HHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPF-LHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~-~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++|+++-....|+..-+ -.|++.|.++|++|.+.-...
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 46766644457777654 446888888899998876554
No 235
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=27.89 E-value=1.2e+02 Score=21.91 Aligned_cols=33 Identities=9% Similarity=-0.003 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
+..+|+++|.. | ......+..|.+.|++|..+.
T Consensus 55 ~~~~ivvyC~~--g--~rs~~a~~~L~~~G~~v~~l~ 87 (100)
T 3foj_A 55 DNETYYIICKA--G--GRSAQVVQYLEQNGVNAVNVE 87 (100)
T ss_dssp TTSEEEEECSS--S--HHHHHHHHHHHTTTCEEEEET
T ss_pred CCCcEEEEcCC--C--chHHHHHHHHHHCCCCEEEec
Confidence 34578888854 3 567788999999999877654
No 236
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.85 E-value=1e+02 Score=23.84 Aligned_cols=38 Identities=5% Similarity=0.122 Sum_probs=24.3
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|. ...+..+.+. -.+|++.++...
T Consensus 44 ~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 44 YRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3455667899999993 3345554443 258888776543
No 237
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=27.71 E-value=2.3e+02 Score=24.88 Aligned_cols=35 Identities=3% Similarity=0.115 Sum_probs=25.6
Q ss_pred CeEEEecCCC--ccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFA--VGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~--~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
-+.++++.++ .| + -..+|+.|+++|++|.++....
T Consensus 26 ~k~vlVTGasg~~G-I--G~~ia~~l~~~G~~V~~~~r~~ 62 (280)
T 3nrc_A 26 GKKILITGLLSNKS-I--AYGIAKAMHREGAELAFTYVGQ 62 (280)
T ss_dssp TCEEEECCCCSTTC-H--HHHHHHHHHHTTCEEEEEECTT
T ss_pred CCEEEEECCCCCCC-H--HHHHHHHHHHcCCEEEEeeCch
Confidence 4677777643 22 2 2578999999999999887665
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=27.64 E-value=61 Score=28.55 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=31.0
Q ss_pred CCCCCCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 10 SSSSAFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 10 ~~~~~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|..++.+++.+ +-++.|=..-...||..|+ +|++|.++=.+.
T Consensus 22 ~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 22 MDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp ----CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 44555666665 4477899999999999999 999999986554
No 239
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=27.61 E-value=67 Score=28.13 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=29.7
Q ss_pred EEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 17 IVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 17 il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|.|+ .-++.|=..-...||..|+++|++|.++=.+.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4444 45778999999999999999999999986654
No 240
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=27.32 E-value=41 Score=31.61 Aligned_cols=30 Identities=23% Similarity=0.223 Sum_probs=23.5
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
+||+++-.+-.| +.+|..|+++|++|+++-
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 588888544333 778899999999999984
No 241
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=27.29 E-value=53 Score=28.87 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=22.7
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+.++++.++. -+ -..+|+.|+++|++|+++...
T Consensus 15 k~vlITGasg-gi--G~~la~~l~~~G~~V~~~~r~ 47 (266)
T 1xq1_A 15 KTVLVTGGTK-GI--GHAIVEEFAGFGAVIHTCARN 47 (266)
T ss_dssp CEEEETTTTS-HH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCC-HH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4555654433 22 357899999999999988654
No 242
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=27.28 E-value=51 Score=28.92 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=22.1
Q ss_pred HHhCCCcEEEEc-Cc-cchHHHHHHcCCceEEEec
Q 012080 113 IKAAKPRLLFYD-IA-YWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 113 l~~~~~Dlvi~D-~~-~~~~~~A~~~giP~v~~~~ 145 (471)
|.+++||+||.. .. .-.....+..|||++.+..
T Consensus 56 i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 56 VKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 446789999987 32 2233445678999987653
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=27.25 E-value=55 Score=28.24 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=66.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHH-HHhCCCeEEEEeCCCchhhh-cc---CCCC------CCCeEEEEecCCCCCCCCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNK-LAEKGHKITILLPRKAQTQL-QH---FNLH------PDLITLHPLTVPHVDGLPAG 83 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~-L~~rGh~Vt~~~~~~~~~~~-~~---~~~~------~~~~~~~~i~~~~~~~~~~~ 83 (471)
.-+++...|+.|-..-++.+|.. +.+.|..|.+++.+.....+ +. .+.. ...+.+.+.. ...
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-------~~~ 103 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGV-------SSV 103 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhH-------HHH
Confidence 34666677999999999998866 45568889999888765443 22 1100 1123333221 000
Q ss_pred CCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-Cccch----------------HHHHHHcCCceEEEecc
Q 012080 84 AETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-IAYWM----------------ATISKSLSIKCIKYNVV 146 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~~~~~----------------~~~A~~~giP~v~~~~~ 146 (471)
..... ..................+...++..+++++|.| +.... ..+|+.+++|.+.++..
T Consensus 104 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 104 VGLPS--EEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred hhccc--chhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 00000 0000000001123345566777888899999999 52211 23678899999887654
No 244
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=27.08 E-value=68 Score=25.51 Aligned_cols=95 Identities=13% Similarity=0.213 Sum_probs=58.2
Q ss_pred EEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHH
Q 012080 18 VMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINL 97 (471)
Q Consensus 18 l~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (471)
+|++... .+=.-++.+|+.|.+.|+++ +++......++..| +....+. ...++..
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~lGf~i--~AT~GTa~~L~~~G-----i~v~~v~-----k~~egg~------------ 81 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHNEGFKL--FATEATSDWLNANN-----VPATPVA-----WPSQEGQ------------ 81 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHTTTCEE--EEEHHHHHHHHHTT-----CCCEEEC-----CGGGC--------------
T ss_pred EEEEecc-cchHHHHHHHHHHHHCCCEE--EECchHHHHHHHcC-----CeEEEEE-----eccCCCc------------
Confidence 5666543 45677899999999999973 34444455666656 5555543 1111100
Q ss_pred HHHHHHHhHHHHHHHHHhCCCcEEEEcC-c--------cchHHHHHHcCCceEE
Q 012080 98 LVIAMDRCRGQVEAVIKAAKPRLLFYDI-A--------YWMATISKSLSIKCIK 142 (471)
Q Consensus 98 ~~~~~~~~~~~l~~~l~~~~~Dlvi~D~-~--------~~~~~~A~~~giP~v~ 142 (471)
+...+.+.+++++.+.|+||.-- . ..-...|-..+||++.
T Consensus 82 -----~~~~~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 82 -----NPSLSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp --------CBCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred -----ccccccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 00013577788899999999962 1 1224467789999984
No 245
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.96 E-value=87 Score=24.29 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCcEEEEc--C-ccchHHHHHH-----cCCceEEEecch
Q 012080 107 GQVEAVIKAAKPRLLFYD--I-AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D--~-~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
....+.+++.+||+||.| + ...+..+.+. ..+|++.++...
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 344555666789999999 3 4455555543 247777776543
No 246
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=26.84 E-value=70 Score=26.12 Aligned_cols=39 Identities=5% Similarity=-0.067 Sum_probs=25.8
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecch
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVC 147 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~ 147 (471)
..+.+++.+||+||.|+ ..-|..+++. ..+|++.++...
T Consensus 43 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 43 ALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 34455677899999993 4456665543 357888776554
No 247
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=26.81 E-value=97 Score=22.75 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=34.5
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 371 SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
..+|+|++ ..+......... +.|+--.+.+. ++.++|.++|++++..
T Consensus 79 ~~~~ii~~--~~~~~~~~~~~~-~~g~~~~l~kp----~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 79 KNVPIVII--GNPDGFAQHRKL-KAHADEYVAKP----VDADQLVERAGALIGF 125 (127)
T ss_dssp TTSCEEEE--ECGGGHHHHHHS-TTCCSEEEESS----CCHHHHHHHHHHHHCC
T ss_pred cCCCEEEE--ecCCchhHHHHH-HhCcchheeCC----CCHHHHHHHHHHHHcC
Confidence 57899998 445555666667 77775555542 8999999999998864
No 248
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=26.63 E-value=60 Score=29.91 Aligned_cols=34 Identities=29% Similarity=0.270 Sum_probs=23.0
Q ss_pred HHHhCCCcEEEEc-CccchHHHHHHcCCceEEEec
Q 012080 112 VIKAAKPRLLFYD-IAYWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 112 ~l~~~~~Dlvi~D-~~~~~~~~A~~~giP~v~~~~ 145 (471)
.|.+++||+||.. ...-...--+..|+|++.+..
T Consensus 111 ~i~al~PDLIi~~~~~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 111 ACVAATPDVVFLPMKLKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHHHTCCSEEEEEGGGHHHHHHHHHTTCCEEEECC
T ss_pred HHHhcCCCEEEEeCcchhHHHHHHHcCCCEEEEcC
Confidence 3446799999998 433233344678999998753
No 249
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=26.55 E-value=84 Score=23.38 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=23.1
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecc
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVV 146 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~ 146 (471)
.+.+++.+||+||.|+ ...|..+++.+ .+|.+.++..
T Consensus 44 ~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 44 MKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 3455667899999993 34566666543 3556655443
No 250
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=26.46 E-value=63 Score=27.09 Aligned_cols=40 Identities=13% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCeEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAV---GHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~---GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+++|.-+. =-.++...|++.|.++|.+|.|+.++-.
T Consensus 46 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 88 (203)
T 2fsv_C 46 ASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA 88 (203)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 357888876433 1456789999999999999999998863
No 251
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=26.43 E-value=49 Score=32.53 Aligned_cols=36 Identities=3% Similarity=-0.077 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 106 RGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 106 ~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
..++++++++.+||++|... .+..+|+++|||++.+
T Consensus 390 ~~el~~~i~~~~pDL~ig~~--~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 390 ARVLLKTVDEYQADILIAGG--RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHHHTTCSEEECCG--GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHHHhcCCCEEEECC--chhHHHHHcCCCEEEe
Confidence 34667788888999999973 2456799999999743
No 252
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=26.38 E-value=58 Score=32.14 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
.++++.+++.+||++|... .+..+|+++|||++.+
T Consensus 407 ~el~~~i~~~~pDL~ig~~--~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 407 YEFEEFVKRIKPDLIGSGI--KEKFIFQKMGIPFREM 441 (492)
T ss_dssp HHHHHHHHHHCCSEEEECH--HHHHHHHHTTCCEEES
T ss_pred HHHHHHHHhcCCcEEEeCc--chhHHHHHcCCCEEec
Confidence 3566778888999999982 2356899999999853
No 253
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=26.34 E-value=44 Score=33.26 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHc-------CCceEEE
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSL-------SIKCIKY 143 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~-------giP~v~~ 143 (471)
..+++.+++.+||+||.... +..+|+++ |||++.+
T Consensus 428 ~~l~~~i~~~~pDLlig~s~--~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 428 WHLRSLVFTDKPDFMIGNSY--GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp HHHHHHHHHTCCSEEEECTT--HHHHHHHHHHHCGGGCCCEEEC
T ss_pred HHHHHHHHhcCCCEEEECcc--HHHHHHHhhcccccCCCceEEe
Confidence 45667777889999999931 23355655 9999854
No 254
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=26.30 E-value=67 Score=32.33 Aligned_cols=43 Identities=12% Similarity=-0.173 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT 55 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~ 55 (471)
...+|++.+.++-.|-....-++..|..+|++|..++.....+
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e 139 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAE 139 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 4678999999999999999999999999999999988775443
No 255
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.29 E-value=82 Score=23.57 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=27.7
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITIL 48 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~ 48 (471)
.++|+++|..|.|+-.-...|-+.+.++|.++.+-
T Consensus 4 ~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~ 38 (109)
T 2l2q_A 4 SMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIE 38 (109)
T ss_dssp CEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEE
Confidence 36899999988888766677888888889876543
No 256
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=26.21 E-value=69 Score=27.58 Aligned_cols=40 Identities=8% Similarity=-0.100 Sum_probs=31.9
Q ss_pred CCeEEE-e-cCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCc
Q 012080 14 AFPIVM-L-PWFAVGHMTPFLHLSNKLAEK-GHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~-~-~~~~~GH~~p~~~la~~L~~r-Gh~Vt~~~~~~~ 53 (471)
+++++. . +-++.|-..-...||..|+++ |++|.++=.+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 345544 4 448889999999999999999 999999876643
No 257
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=26.15 E-value=3.7e+02 Score=24.33 Aligned_cols=128 Identities=9% Similarity=0.011 Sum_probs=65.7
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
.+.+|+.|.+.. .++.++... +..++.+.... .+ ..+.+.++. ++. .-+-...++|..+++
T Consensus 7 ~igiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~~--~~-----~~~~~~~~~---~~~-~~~~~~~~ll~~~~~ 68 (330)
T 3e9m_A 7 RYGIMSTAQIVP-------RFVAGLRESAQAEVRGIASRR--LE-----NAQKMAKEL---AIP-VAYGSYEELCKDETI 68 (330)
T ss_dssp EEEECSCCTTHH-------HHHHHHHHSSSEEEEEEBCSS--SH-----HHHHHHHHT---TCC-CCBSSHHHHHHCTTC
T ss_pred EEEEECchHHHH-------HHHHHHHhCCCcEEEEEEeCC--HH-----HHHHHHHHc---CCC-ceeCCHHHHhcCCCC
Confidence 377888888752 355566553 44555454321 00 011121111 110 114456778876555
Q ss_pred ceeeccCCcc----hHHHHHhhCCcEEe-ccccc--cchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 354 GCFVSHCGFG----SMWESLMSDCQIVL-VPHLG--DQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 354 ~~~ItHgG~~----s~~Eal~~GvP~v~-~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++----.. -+.+++.+|+++++ -|+.. ++-.-...+.++.|+-+.+... ..+.+ ..+.+++++.+
T Consensus 69 D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~--~r~~p--~~~~~k~~i~~ 142 (330)
T 3e9m_A 69 DIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQK--SVFLP--ITQKVKATIQE 142 (330)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCS--GGGCH--HHHHHHHHHHT
T ss_pred CEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEh--hhhCH--HHHHHHHHHhC
Confidence 5566544433 36788999999886 37544 3332222222266776666642 12444 34455565543
No 258
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.03 E-value=1.1e+02 Score=23.29 Aligned_cols=41 Identities=7% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHH--hCCCcEEEEc--C-ccchHHHHHHc-----CCceEEEecch
Q 012080 107 GQVEAVIK--AAKPRLLFYD--I-AYWMATISKSL-----SIKCIKYNVVC 147 (471)
Q Consensus 107 ~~l~~~l~--~~~~Dlvi~D--~-~~~~~~~A~~~-----giP~v~~~~~~ 147 (471)
....+.++ ..+||+||.| + ...|..+.+.+ .+|++.++...
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCC
No 259
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=26.01 E-value=64 Score=29.51 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=30.0
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN 61 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~ 61 (471)
++|+++-.|+.| ..+|..|.++||+|+++..... +.+.+.|
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~~-~~i~~~G 43 (320)
T 3i83_A 3 LNILVIGTGAIG-----SFYGALLAKTGHCVSVVSRSDY-ETVKAKG 43 (320)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHTTCEEEEECSTTH-HHHHHHC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCChH-HHHHhCC
Confidence 588888666555 4578889999999999987763 4444434
No 260
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.00 E-value=91 Score=17.81 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 413 SLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 413 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+|++.++++|... +.......+|++++..
T Consensus 5 QLE~kVEeLl~~n----~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 5 QLEXKVXELLXKN----XHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHHhc
Confidence 4888999998432 2788888888887753
No 261
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.84 E-value=1.2e+02 Score=22.51 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=24.2
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEecch
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNVVC 147 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~~~ 147 (471)
.+.+++.+||+||.|. ...|..+++.+ .+|.+.++...
T Consensus 42 ~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 42 LNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 3455666899999993 34566655543 46777766543
No 262
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=25.77 E-value=66 Score=27.07 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=31.4
Q ss_pred CCeEEEecCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAV---GHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~---GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+++|.-+. =-.++...|++.|.++|.+|.|+.++-.
T Consensus 45 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVA 87 (207)
T 1djl_A 45 ANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVA 87 (207)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccC
Confidence 357888876433 1456789999999999999999998863
No 263
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=25.69 E-value=66 Score=28.30 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.|.|..-++.|-..-...||..|+++|++|.++=.+.
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 4555556888999999999999999999998875443
No 264
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=25.65 E-value=1.1e+02 Score=22.04 Aligned_cols=38 Identities=3% Similarity=-0.073 Sum_probs=23.1
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHH-------cCCceEEEecc
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVV 146 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~ 146 (471)
..+.+++.+||+||.|. ...+..+.+. ..+|++.++..
T Consensus 37 ~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 37 ALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 33445556899999993 3344444432 35788877654
No 265
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=25.59 E-value=75 Score=28.45 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=31.3
Q ss_pred CCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|.+++.+ .-++.|=..-...||..|+++|++|.++=.+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4555555 34788999999999999999999999886665
No 266
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=25.55 E-value=1.2e+02 Score=22.96 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=16.5
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHH
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKS 135 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~ 135 (471)
+.+++.+||+||.|+ ...|..+++.
T Consensus 48 ~~l~~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 48 QAYQNRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHHSCCSEEEECTTCCSSCHHHHHHH
T ss_pred HHHhcCCCCEEEEeCCCCCCcHHHHHHH
Confidence 345567899999993 3456655554
No 267
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=25.27 E-value=52 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=23.7
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+|++. ++.|.+- ..|+++|.++||+|+.+.-...
T Consensus 2 kvlVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~~ 35 (221)
T 3ew7_A 2 KIGII--GATGRAG--SRILEEAKNRGHEVTAIVRNAG 35 (221)
T ss_dssp EEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESCSH
T ss_pred eEEEE--cCCchhH--HHHHHHHHhCCCEEEEEEcCch
Confidence 55544 3344443 4788999999999999876643
No 268
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=25.22 E-value=1.2e+02 Score=24.52 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHhCCCcEEEEc-Ccc-c------------h--HHHHHHcCCceEEEecch
Q 012080 103 DRCRGQVEAVIKAAKPRLLFYD-IAY-W------------M--ATISKSLSIKCIKYNVVC 147 (471)
Q Consensus 103 ~~~~~~l~~~l~~~~~Dlvi~D-~~~-~------------~--~~~A~~~giP~v~~~~~~ 147 (471)
..+...+.+++++.+||.+..+ .++ - | ..++...|+|+.-+.+..
T Consensus 45 ~~i~~~l~~~i~~~~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~ 105 (158)
T 1hjr_A 45 KLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQ 105 (158)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHH
Confidence 4566788899999999999999 322 1 1 335567899988776543
No 269
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=25.06 E-value=4e+02 Score=24.44 Aligned_cols=126 Identities=11% Similarity=0.072 Sum_probs=67.4
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
.+.+|++|.+.. ..+.++... +..++.+... -++... .....++. -|-...++|.++++
T Consensus 7 ~vgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~----------~~~~~~-~a~~~g~~--~~~~~~~ll~~~~~ 66 (359)
T 3e18_A 7 QLVIVGYGGMGS-------YHVTLASAADNLEVHGVFDI----------LAEKRE-AAAQKGLK--IYESYEAVLADEKV 66 (359)
T ss_dssp EEEEECCSHHHH-------HHHHHHHTSTTEEEEEEECS----------SHHHHH-HHHTTTCC--BCSCHHHHHHCTTC
T ss_pred cEEEECcCHHHH-------HHHHHHHhCCCcEEEEEEcC----------CHHHHH-HHHhcCCc--eeCCHHHHhcCCCC
Confidence 478888888752 234455444 4555545432 112111 11123432 24566788886666
Q ss_pred ceeeccCCcc----hHHHHHhhCCcEEe-cccccc--chhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 354 GCFVSHCGFG----SMWESLMSDCQIVL-VPHLGD--QILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 354 ~~~ItHgG~~----s~~Eal~~GvP~v~-~P~~~D--Q~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++--.-.. -+.+++.+|+++++ -|+..+ +-.-...+.++.|+-+.+... ..+.+ ....+++++.+
T Consensus 67 D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~--~r~~p--~~~~~k~~i~~ 140 (359)
T 3e18_A 67 DAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQN--RRWDE--DFLIIKEMFEQ 140 (359)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECG--GGGCH--HHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEee--eccCH--HHHHHHHHHHc
Confidence 6666544433 46788999999987 476543 333333333266766666542 12444 34455566543
No 270
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=25.06 E-value=54 Score=30.15 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 30 PFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 30 p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
.-.++|+++.++|++||++..+..
T Consensus 67 mG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 67 RGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTS
T ss_pred HHHHHHHHHHHCCCEEEEEecCCC
Confidence 456789999999999999987643
No 271
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=25.05 E-value=52 Score=30.86 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|...+++|.|+-.+..| ..+|..|+++||+|++.....
T Consensus 25 m~~~~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~~ 62 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWG-----TALALVLARKGQKVRLWSYES 62 (356)
T ss_dssp --CCCSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSCH
T ss_pred ccccCCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCCH
Confidence 44456789998766555 468899999999999987753
No 272
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=25.04 E-value=53 Score=27.80 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=23.0
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+|++. |+.|.+- ..|+++|.++||+|+.+.-..
T Consensus 2 kilVt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 34 (224)
T 3h2s_A 2 KIAVL--GATGRAG--SAIVAEARRRGHEVLAVVRDP 34 (224)
T ss_dssp EEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEE--cCCCHHH--HHHHHHHHHCCCEEEEEEecc
Confidence 54444 3344443 578899999999999987654
No 273
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.02 E-value=2e+02 Score=25.77 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=48.6
Q ss_pred CeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEE
Q 012080 43 HKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLLF 122 (471)
Q Consensus 43 h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi 122 (471)
.+..++..+.+..+.+.+| ++...+. +. + ... .......+.+.+++.+..+|+
T Consensus 190 ~~~~v~~H~af~Yf~~~yG-----l~~~~~~-----~~--~----~ep-----------s~~~l~~l~~~ik~~~v~~If 242 (291)
T 1pq4_A 190 QRKFIVFHPSWAYFARDYN-----LVQIPIE-----VE--G----QEP-----------SAQELKQLIDTAKENNLTMVF 242 (291)
T ss_dssp CCEEEESSCCCHHHHHHTT-----CEEEESC-----BT--T----BCC-----------CHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEECCchHHHHHHCC-----CEEeecc-----cC--C----CCC-----------CHHHHHHHHHHHHHcCCCEEE
Confidence 3445566666777778888 7765542 11 1 111 112355777888899999999
Q ss_pred Ec-C--ccchHHHHHHcCCceEEEe
Q 012080 123 YD-I--AYWMATISKSLSIKCIKYN 144 (471)
Q Consensus 123 ~D-~--~~~~~~~A~~~giP~v~~~ 144 (471)
++ . .-.+-.+|+..|++.+.+.
T Consensus 243 ~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 243 GETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp EETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred EeCCCChHHHHHHHHHcCCeEEEEc
Confidence 99 3 4445668999999987654
No 274
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=25.01 E-value=95 Score=23.42 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=30.4
Q ss_pred CCCCeEEEecCCCccCHHH-HHHHHHHHHhCCCeEEEEe
Q 012080 12 SSAFPIVMLPWFAVGHMTP-FLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p-~~~la~~L~~rGh~Vt~~~ 49 (471)
.++.+|+++|..|.|.-.- ...|-+.+.+.|.++.+-.
T Consensus 19 ~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 19 GSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp CSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567899999999998774 6788888889999865543
No 275
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=24.94 E-value=3.8e+02 Score=24.08 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=19.5
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCC--CeEEEEe
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKG--HKITILL 49 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rG--h~Vt~~~ 49 (471)
.++++|++. |+.|.+- ..|++.|.++| ++|+...
T Consensus 22 ~~~~~vlVt--GatG~iG--~~l~~~L~~~g~~~~v~~~~ 57 (346)
T 4egb_A 22 SNAMNILVT--GGAGFIG--SNFVHYMLQSYETYKIINFD 57 (346)
T ss_dssp --CEEEEEE--TTTSHHH--HHHHHHHHHHCTTEEEEEEE
T ss_pred cCCCeEEEE--CCccHHH--HHHHHHHHhhCCCcEEEEEe
Confidence 344565554 3445443 46789999999 4554444
No 276
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=24.85 E-value=1.7e+02 Score=22.03 Aligned_cols=49 Identities=6% Similarity=0.101 Sum_probs=29.4
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 371 SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
..+|+|++--..|.......+. ..|+--.+.+. ++.++|..+|++++..
T Consensus 71 ~~~~ii~~s~~~~~~~~~~~~~-~~ga~~~l~KP----~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 71 PETVRIIITGYTDSASMMAAIN-DAGIHQFLTKP----WHPEQLLSSARNAARM 119 (139)
T ss_dssp TTSEEEEEESCTTCHHHHHHHH-HTTCCEEEESS----CCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHH-hhchhhhccCC----CCHHHHHHHHHHHHHH
Confidence 4577777754444333333333 33453344431 8999999999999864
No 277
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=24.72 E-value=44 Score=28.68 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=26.2
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+..+|++|.|+-.+..| ..+|+.|.++||+|+++...
T Consensus 19 ~~m~mmkI~IIG~G~mG-----~~la~~l~~~g~~V~~v~~r 55 (220)
T 4huj_A 19 YFQSMTTYAIIGAGAIG-----SALAERFTAAQIPAIIANSR 55 (220)
T ss_dssp TGGGSCCEEEEECHHHH-----HHHHHHHHHTTCCEEEECTT
T ss_pred hhhcCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 33456789888644333 46888999999999885433
No 278
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=24.71 E-value=65 Score=29.44 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=22.3
Q ss_pred HHhCCCcEEEEc-Cc-cchHHHHHHcCCceEEEec
Q 012080 113 IKAAKPRLLFYD-IA-YWMATISKSLSIKCIKYNV 145 (471)
Q Consensus 113 l~~~~~Dlvi~D-~~-~~~~~~A~~~giP~v~~~~ 145 (471)
|-+++||+||.. .. .-...--++.|||++.+..
T Consensus 80 i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 80 LLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp HHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECS
T ss_pred HHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEec
Confidence 345699999988 42 2233444678999997754
No 279
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=24.59 E-value=58 Score=30.43 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=21.9
Q ss_pred ccCcceeecc-CCcchHHHHHhhCCcEEeccc
Q 012080 350 HSSVGCFVSH-CGFGSMWESLMSDCQIVLVPH 380 (471)
Q Consensus 350 ~~~v~~~ItH-gG~~s~~Eal~~GvP~v~~P~ 380 (471)
.||+ +|+| .+..+..-+-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 5776 6666 666677778889999998853
No 280
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=24.57 E-value=1.5e+02 Score=24.07 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=45.3
Q ss_pred cEEEEEeCccccCC-HHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 275 SVVYCAFGSQIILE-KKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
..+|++..-..... .....++...++..+..+++ +..+... .+..+ |--....+..|++
T Consensus 11 ~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~---P~~~~~~----~~~~i-------------~~~d~~~i~~aD~ 70 (161)
T 2f62_A 11 KIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI---PTDNEAT----EALDI-------------RQKNIQMIKDCDA 70 (161)
T ss_dssp EEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC---TTTTCCS----SHHHH-------------HHHHHHHHHHCSE
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC---CCccCcc----hHHHH-------------HHHHHHHHHhCCE
Confidence 36666544333345 56677788888877765433 2111000 11111 1112345566666
Q ss_pred ceee-c-----cCCcchHHHH---HhhCCcEEecc
Q 012080 354 GCFV-S-----HCGFGSMWES---LMSDCQIVLVP 379 (471)
Q Consensus 354 ~~~I-t-----HgG~~s~~Ea---l~~GvP~v~~P 379 (471)
-+.+ + .--+||..|. .+.|+|++++-
T Consensus 71 vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 71 VIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp EEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 2223 2 2346899885 77999999974
No 281
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=24.46 E-value=1.8e+02 Score=24.72 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=18.6
Q ss_pred eEEEecCCCc-c-CHHHHHHHHHHHHhC
Q 012080 16 PIVMLPWFAV-G-HMTPFLHLSNKLAEK 41 (471)
Q Consensus 16 ~il~~~~~~~-G-H~~p~~~la~~L~~r 41 (471)
+||+--+.-+ | -.||...++++|...
T Consensus 2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 29 (206)
T 1iu8_A 2 KILLTGFEPFGGDDKNPTMDIVEALSER 29 (206)
T ss_dssp CEEEEEECCCTTCSCCHHHHHHHHHHHH
T ss_pred EEEEEeecCCCCCCCCcHHHHHHHhccc
Confidence 5676533222 2 789999999999865
No 282
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=24.45 E-value=1.2e+02 Score=22.84 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=24.0
Q ss_pred HHHHhCCCcEEEEcC-c---cchHHHHHH----cCCceEEEecch
Q 012080 111 AVIKAAKPRLLFYDI-A---YWMATISKS----LSIKCIKYNVVC 147 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~-~---~~~~~~A~~----~giP~v~~~~~~ 147 (471)
+.+++.+||+||.|. . ..+..+++. ..+|++.++...
T Consensus 48 ~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 48 RCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 344456799999993 3 345555444 378888876554
No 283
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=24.40 E-value=90 Score=27.39 Aligned_cols=41 Identities=22% Similarity=0.097 Sum_probs=32.0
Q ss_pred CCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 14 AFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 14 ~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+.+++.+ .-++.|=..-...||..|+++|++|.++=.+...
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 4455444 4477899999999999999999999998666543
No 284
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=24.39 E-value=1.7e+02 Score=19.96 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=30.7
Q ss_pred CcccHHHHHHHHHHHhccCchhhHH--HHHHHHHHHhhh-cCC-CchhHHHHHHHHH
Q 012080 407 GWFSKESLCKAIKCVMDKESEVGNV--VRRNHAKWKGTL-VSP-GFVSGYIDKFVQN 459 (471)
Q Consensus 407 ~~~t~~~l~~ai~~ll~~~~~~~~~--~~~~a~~l~~~~-~~~-~~~~~~i~~~~~~ 459 (471)
+..|.++|.++|+++|... +-+. .|+=-+.+.+.+ .-. ......|...+..
T Consensus 10 ~~Psd~ei~~~I~~IL~~a--DL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~ 64 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASA--NLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKE 64 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTS--CGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhC--CHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHH
Confidence 4589999999999999753 2222 444445555555 322 4344555555543
No 285
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=24.29 E-value=67 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+-||+++-.+..| ..+|+.|.++||+|+++.....
T Consensus 7 ~~~viIiG~G~~G-----~~la~~L~~~g~~v~vid~~~~ 41 (140)
T 3fwz_A 7 CNHALLVGYGRVG-----SLLGEKLLASDIPLVVIETSRT 41 (140)
T ss_dssp CSCEEEECCSHHH-----HHHHHHHHHTTCCEEEEESCHH
T ss_pred CCCEEEECcCHHH-----HHHHHHHHHCCCCEEEEECCHH
Confidence 3478887654333 4789999999999999977653
No 286
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=24.27 E-value=90 Score=27.64 Aligned_cols=40 Identities=10% Similarity=-0.041 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCcEEEEcC-c------cchHHHHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAAKPRLLFYDI-A------YWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~-~------~~~~~~A~~~giP~v~~~~~ 146 (471)
..+.+++++.+||+|++-. . ..+..+|..+|+|.+.....
T Consensus 106 ~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 106 RVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 3445556666899999983 3 26788999999999977654
No 287
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=24.17 E-value=3.8e+02 Score=23.82 Aligned_cols=88 Identities=3% Similarity=-0.156 Sum_probs=45.7
Q ss_pred ccCcceeeccCCcchHHHHH-----hh---CCcEEeccccccchhhHH-----HHHHhhc-ceEEeecccCCcccHHHHH
Q 012080 350 HSSVGCFVSHCGFGSMWESL-----MS---DCQIVLVPHLGDQILNTR-----LLAEELK-VAVEVEREENGWFSKESLC 415 (471)
Q Consensus 350 ~~~v~~~ItHgG~~s~~Eal-----~~---GvP~v~~P~~~DQ~~na~-----~v~~~~G-~G~~l~~~~~~~~t~~~l~ 415 (471)
..++ +|.--|...+.+.+ .. |+|+-++ |.+..+. .+. +-+ +-+.+........-...|+
T Consensus 106 ~adl--Viaat~d~~~n~~I~~~Ar~~f~~~i~VNvv----d~pel~~f~~Pa~~~-~g~~l~IaIST~Gksp~lA~~ir 178 (274)
T 1kyq_A 106 AWYI--IMTCIPDHPESARIYHLCKERFGKQQLVNVA----DKPDLCDFYFGANLE-IGDRLQILISTNGLSPRFGALVR 178 (274)
T ss_dssp CEEE--EEECCSCHHHHHHHHHHHHHHHCTTSEEEET----TCGGGBSEECCEEEE-ETTTEEEEEEESSSCHHHHHHHH
T ss_pred CeEE--EEEcCCChHHHHHHHHHHHHhcCCCcEEEEC----CCcccCeeEeeeEEE-eCCCEEEEEECCCCCcHHHHHHH
Confidence 4555 78777765444443 33 7777332 2222222 222 222 2233333221234456788
Q ss_pred HHHHHHh---ccCchhhHHHHHHHHHHHhhhcCC
Q 012080 416 KAIKCVM---DKESEVGNVVRRNHAKWKGTLVSP 446 (471)
Q Consensus 416 ~ai~~ll---~~~~~~~~~~~~~a~~l~~~~~~~ 446 (471)
+.|+++| .++ .-..+-+.+.++++.+++.
T Consensus 179 ~~ie~~l~~~p~~--~~~~~~~~l~~~R~~ik~~ 210 (274)
T 1kyq_A 179 DEIRNLFTQMGDL--ALEDAVVKLGELRRGIRLL 210 (274)
T ss_dssp HHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCch--hHHHHHHHHHHHHHHHHhh
Confidence 8888888 422 1225667777777777665
No 288
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=24.08 E-value=1.1e+02 Score=22.12 Aligned_cols=33 Identities=6% Similarity=-0.151 Sum_probs=24.5
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
+...|++++..+ ......+..|.+.|++|.++.
T Consensus 55 ~~~~iv~yC~~g----~rs~~a~~~L~~~G~~v~~l~ 87 (103)
T 3eme_A 55 KNEIYYIVCAGG----VRSAKVVEYLEANGIDAVNVE 87 (103)
T ss_dssp TTSEEEEECSSS----SHHHHHHHHHHTTTCEEEEET
T ss_pred CCCeEEEECCCC----hHHHHHHHHHHHCCCCeEEeC
Confidence 445788888543 357778999999999877654
No 289
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=23.96 E-value=83 Score=28.36 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCCCeEEEecCCCccCHHHH--HHHHHHHHhCC-CeEEEEeCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPF--LHLSNKLAEKG-HKITILLPR 51 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~--~~la~~L~~rG-h~Vt~~~~~ 51 (471)
+++.|||++.. ..+|-.+. ..|++.|.+.| ++|++....
T Consensus 2 ~~~~kvLiv~G-~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~ 43 (281)
T 4e5v_A 2 RKPIKTLLITG-QNNHNWQVSHVVLKQILENSGRFDVDFVISP 43 (281)
T ss_dssp CCCEEEEEEES-CCSSCHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred CCceEEEEEcC-CCCCChHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 57889999944 44786443 56788888888 999999764
No 290
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=23.88 E-value=52 Score=29.73 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=24.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
|++|+|+-.|..| ..+|..|.++||+|+++...
T Consensus 3 ~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEECC
Confidence 4688888655444 46789999999999998654
No 291
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=23.84 E-value=4e+02 Score=23.92 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=29.1
Q ss_pred hhCCcEEeccccccc----------------hhhHHHHHHhhcc-eEEeeccc---------CCcccHHHHHHHHHHHh
Q 012080 370 MSDCQIVLVPHLGDQ----------------ILNTRLLAEELKV-AVEVEREE---------NGWFSKESLCKAIKCVM 422 (471)
Q Consensus 370 ~~GvP~v~~P~~~DQ----------------~~na~~v~~~~G~-G~~l~~~~---------~~~~t~~~l~~ai~~ll 422 (471)
.+|+|++.-|.+.=| ..-+.... .+|+ |+.+++.- .-.++++++.+-++++.
T Consensus 193 ~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAv-A~GA~gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~ 270 (285)
T 3sz8_A 193 TGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGI-AVGIAGLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMK 270 (285)
T ss_dssp TTSCCEEEETTTTCC---------------HHHHHHHHH-HHCCSEEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHH
T ss_pred CCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHH-HhCCCEEEEEeccChhccCCchhhccCHHHHHHHHHHHH
Confidence 346777776655422 33455566 7787 67777521 12456666665555443
No 292
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=23.77 E-value=1.4e+02 Score=25.82 Aligned_cols=26 Identities=8% Similarity=0.190 Sum_probs=18.9
Q ss_pred eEEEecCCCc--cCHHHHHHHHHHHHhC
Q 012080 16 PIVMLPWFAV--GHMTPFLHLSNKLAEK 41 (471)
Q Consensus 16 ~il~~~~~~~--GH~~p~~~la~~L~~r 41 (471)
+||+--+.-+ --.||...++++|...
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 30 (220)
T 1a2z_A 3 KVLITGFEPFGGDSKNPTEQIAKYFDRK 30 (220)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTC
T ss_pred EEEEeeccCCCCCCCCcHHHHHHHhhcc
Confidence 4777544222 3789999999999876
No 293
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=23.77 E-value=79 Score=30.76 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 107 GQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 107 ~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
..+++++++.+||++|.+.. +..+|+++|||++.+
T Consensus 375 ~~l~~~i~~~~pDl~ig~~~--~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 375 FDVHQWIKNEGVDLLISNTY--GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHHSCCSEEEESGG--GHHHHHHHTCCEEEC
T ss_pred HHHHHHHHhcCCCEEEeCcc--hHHHHHHcCCCEEEe
Confidence 44677788889999998832 366789999999964
No 294
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.77 E-value=88 Score=17.88 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhhhc
Q 012080 412 ESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLV 444 (471)
Q Consensus 412 ~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~ 444 (471)
.+|++++++++... ........+|++++.
T Consensus 4 nQLEdkVEeLl~~~----~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASAN----YHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh----HHHHHHHHHHHHHhc
Confidence 35888999998532 156667777777654
No 295
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=23.76 E-value=1e+02 Score=24.10 Aligned_cols=40 Identities=8% Similarity=-0.023 Sum_probs=25.8
Q ss_pred HHHHHHHHhC--CCcEEEEc--C-ccchHHHHHH-----cCCceEEEecc
Q 012080 107 GQVEAVIKAA--KPRLLFYD--I-AYWMATISKS-----LSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~--~~Dlvi~D--~-~~~~~~~A~~-----~giP~v~~~~~ 146 (471)
....+.+++. +||+||.| + ...+..+++. ..+|++.++..
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEecc
Confidence 4445556666 79999999 3 4455555543 25888877654
No 296
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.74 E-value=1.1e+02 Score=22.20 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHhCCCcEEEEcC---ccchHHHHHHc----CCceEEEecch
Q 012080 113 IKAAKPRLLFYDI---AYWMATISKSL----SIKCIKYNVVC 147 (471)
Q Consensus 113 l~~~~~Dlvi~D~---~~~~~~~A~~~----giP~v~~~~~~ 147 (471)
+++.+||+||.|. ...|..+++.+ .+|.+.++...
T Consensus 41 ~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 41 AATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp HHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 3445799999993 33566655543 47777776543
No 297
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.70 E-value=1.3e+02 Score=25.27 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=25.4
Q ss_pred HHHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecchh
Q 012080 110 EAVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVVCA 148 (471)
Q Consensus 110 ~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~~~ 148 (471)
.+.+++.+||+||.|+ ...|..+++.+ .+|++.++....
T Consensus 39 ~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 39 MYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3445567899999993 33555555432 588888776543
No 298
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.69 E-value=94 Score=17.63 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 412 ESLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 412 ~~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
.+|++.+++++... ........++++++..
T Consensus 3 nQLEdKvEeLl~~~----~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 3 KXIEXKLXEIXSKX----YHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHh----hHHHHHHHHHHHHHcc
Confidence 35888999998532 2677778888877643
No 299
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=23.60 E-value=1.3e+02 Score=22.70 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=18.8
Q ss_pred HHHHHHhCCCcEEEEcC---ccchHHHHHHc
Q 012080 109 VEAVIKAAKPRLLFYDI---AYWMATISKSL 136 (471)
Q Consensus 109 l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~ 136 (471)
..+.+++.+||+||.|. ...+..+++.+
T Consensus 47 al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 47 VLKFLQHNKVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHHCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEecCCCCCCHHHHHHHH
Confidence 33455667899999993 44566666654
No 300
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.55 E-value=3.6e+02 Score=31.76 Aligned_cols=86 Identities=9% Similarity=0.090 Sum_probs=57.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchh--hhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQT--QLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDV 90 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (471)
+...|+++-.++.|-..-+++++.+..++|++|.|+..+.... ..++.|..-..+.+.. + .
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~-~--------~-------- 1488 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ-P--------D-------- 1488 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEEC-C--------S--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeec-C--------C--------
Confidence 3457788888889999999999999999999999999886432 2333442111222211 1 0
Q ss_pred ChhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEEc-C
Q 012080 91 PMSSINLLVIAMDRCRGQVEAVIKAAKPRLLFYD-I 125 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D-~ 125 (471)
+. +.....+..++++.+||+||.| +
T Consensus 1489 ~~----------E~~l~~~~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1489 TG----------EQALEICDALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp SH----------HHHHHHHHHHHHHTCCSEEEESCG
T ss_pred hH----------HHHHHHHHHHHhcCCCCEEEEcCh
Confidence 00 1233455567788899999999 6
No 301
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=23.49 E-value=1.2e+02 Score=27.43 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=30.2
Q ss_pred CCeEEEecCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVG-H---MTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~G-H---~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.||+++..+-.+ | +.-...++++|.++||+|..+.+..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4688888766544 3 3467899999999999999988544
No 302
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.48 E-value=99 Score=17.70 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=20.9
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 413 SLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 413 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+|++.++++|... ........++++++..
T Consensus 5 QLEdKVEeLl~~n----~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 5 QIEDKGEEILSKL----YHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHHHcc
Confidence 4888999998532 1677778888887654
No 303
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=23.41 E-value=85 Score=27.87 Aligned_cols=43 Identities=19% Similarity=0.110 Sum_probs=25.5
Q ss_pred CccCCCCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 6 SCSSSSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 6 ~~~~~~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+...|..-+-++++++.++.| + -..+|+.|+++|++|.++...
T Consensus 19 ~~~~m~~~~~k~~lVTGas~G-I--G~aia~~la~~G~~V~~~~r~ 61 (272)
T 4dyv_A 19 YFQSMSKTGKKIAIVTGAGSG-V--GRAVAVALAGAGYGVALAGRR 61 (272)
T ss_dssp ---------CCEEEETTTTSH-H--HHHHHHHHHHTTCEEEEEESC
T ss_pred ehhhhcCCCCCEEEEeCCCcH-H--HHHHHHHHHHCCCEEEEEECC
Confidence 333444444578888766543 2 357899999999999887654
No 304
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=23.39 E-value=57 Score=28.50 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
...++|.|+-.|..|- .||..|+++||+|+.+...
T Consensus 4 ~~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~~ 38 (232)
T 3dfu_A 4 APRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHAP 38 (232)
T ss_dssp CCCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSSG
T ss_pred CCCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecCH
Confidence 3456999998777773 5889999999999877653
No 305
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=23.38 E-value=89 Score=27.62 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=29.3
Q ss_pred HHHHHHHhCCCcEEEEcC-c------cchHHHHHHcCCceEEEecc
Q 012080 108 QVEAVIKAAKPRLLFYDI-A------YWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~-~------~~~~~~A~~~giP~v~~~~~ 146 (471)
.+.+++++.+||+|++-. . ..+..+|..+|+|.+.....
T Consensus 104 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 104 ILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 344556666899999983 2 26788999999999977654
No 306
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.36 E-value=1.4e+02 Score=22.17 Aligned_cols=39 Identities=5% Similarity=-0.084 Sum_probs=29.4
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
++.+|+++|..+.|=-.-.-.+-+.+.++|.++.+-...
T Consensus 2 ~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 2 EKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp CCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 356899998877765566668888999999887665433
No 307
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.33 E-value=79 Score=24.66 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=24.4
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecchh
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVCA 148 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~~ 148 (471)
+.+++.+||+||.|. ...+..+.+. -.+|++.++....
T Consensus 41 ~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 41 AGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 344556899999993 3345554443 2688888876544
No 308
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=23.22 E-value=1.3e+02 Score=22.86 Aligned_cols=39 Identities=8% Similarity=0.013 Sum_probs=28.1
Q ss_pred eEEEe-cCCCccCH--HHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 16 PIVML-PWFAVGHM--TPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 16 ~il~~-~~~~~GH~--~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
+++|+ ..+-+|+. .-.+.+|..+...||+|.++-..+-.
T Consensus 3 k~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~DGV 44 (119)
T 2d1p_B 3 RIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV 44 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGG
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehHHH
Confidence 45554 44445544 66788999999999999998877643
No 309
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=23.05 E-value=3.1e+02 Score=22.43 Aligned_cols=142 Identities=13% Similarity=0.094 Sum_probs=71.4
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+|.|-|-+||.+ +....++....|+..+.++-+.+-. .+ ..|+.+.+- +-+ ...-.+
T Consensus 11 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~S-aH------R~p~~l~~~-----------~~~---a~~~g~ 67 (170)
T 1xmp_A 11 KSLVGVIMGSTS--DWETMKYACDILDELNIPYEKKVVS-AH------RTPDYMFEY-----------AET---ARERGL 67 (170)
T ss_dssp CCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECC-TT------TSHHHHHHH-----------HHH---TTTTTC
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEe-cc------CCHHHHHHH-----------HHH---HHhCCC
Confidence 457777788875 4555677777778888887655542 11 256544321 100 000112
Q ss_pred ceeeccCCcchHHHHHh---hCCcEEecccccc--chhhH-HHHHHh--hcceE-EeecccCCcccHHHHHHHHHHHhcc
Q 012080 354 GCFVSHCGFGSMWESLM---SDCQIVLVPHLGD--QILNT-RLLAEE--LKVAV-EVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 354 ~~~ItHgG~~s~~Eal~---~GvP~v~~P~~~D--Q~~na-~~v~~~--~G~G~-~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
++||.=.|...-+-++. .-+|+|.+|.-.. +-..+ .-+. + .|+.+ ++..++.+-.+..-+...|- -+.|
T Consensus 68 ~ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~daLlSiv-qmP~GvpVatV~I~~a~~~nAallAaqIl-a~~d 145 (170)
T 1xmp_A 68 KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIV-QMPGGVPVATVAIGKAGSTNAGLLAAQIL-GSFH 145 (170)
T ss_dssp CEEEEEEESSCCHHHHHHTTCCSCEEEEEECCTTTTTHHHHHHHH-CCCTTCCCEECCSSHHHHHHHHHHHHHHH-HTTC
T ss_pred cEEEEECCchhhhHHHHHhccCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEecCCcchHHHHHHHHHHH-ccCC
Confidence 23777666543333333 3589999997432 11111 2234 4 44542 11211001134444444443 3456
Q ss_pred CchhhHHHHHHHHHHHhhhcC
Q 012080 425 ESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 425 ~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+ ..+++.+.+++.+++
T Consensus 146 ~-----~l~~kl~~~r~~~~~ 161 (170)
T 1xmp_A 146 D-----DIHDALELRREAIEK 161 (170)
T ss_dssp H-----HHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHH
Confidence 5 777777777776644
No 310
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=23.03 E-value=1e+02 Score=27.64 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=34.3
Q ss_pred CCCCeEEEecCCC---ccCHHHHHHHHHHHHhCCCeEEEEeCCCch
Q 012080 12 SSAFPIVMLPWFA---VGHMTPFLHLSNKLAEKGHKITILLPRKAQ 54 (471)
Q Consensus 12 ~~~~~il~~~~~~---~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~ 54 (471)
..++|.+|++.+- .|-=.-...|+..|+.||++||..=.+++-
T Consensus 20 ~~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 20 FQSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI 65 (295)
T ss_dssp -CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred cccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccce
Confidence 4567899987654 477788999999999999999998776654
No 311
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=22.94 E-value=72 Score=23.99 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHhCCCcEEEEc--C-ccchHHHHHHc-----CCceEEEecc
Q 012080 113 IKAAKPRLLFYD--I-AYWMATISKSL-----SIKCIKYNVV 146 (471)
Q Consensus 113 l~~~~~Dlvi~D--~-~~~~~~~A~~~-----giP~v~~~~~ 146 (471)
+++.+||+||.| + ...|..+.+.+ .+|++.++..
T Consensus 42 ~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 42 VETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCC
Confidence 344589999999 3 44566655442 4777766554
No 312
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=22.92 E-value=1.1e+02 Score=26.21 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=19.3
Q ss_pred CeEEEecCCCc-c-CHHHHHHHHHHHHhC
Q 012080 15 FPIVMLPWFAV-G-HMTPFLHLSNKLAEK 41 (471)
Q Consensus 15 ~~il~~~~~~~-G-H~~p~~~la~~L~~r 41 (471)
||||+--+.-+ | ..||...++++|...
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 29 (208)
T 1x10_A 1 MKVLVTGFEPFGGEKINPTERIAKDLDGI 29 (208)
T ss_dssp CEEEEEEECCCTTCSCCHHHHHHHHHTTC
T ss_pred CEEEEEeecCCCCCCCChHHHHHHHhhcc
Confidence 36777544222 2 789999999999876
No 313
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=22.91 E-value=1.6e+02 Score=25.23 Aligned_cols=50 Identities=10% Similarity=-0.041 Sum_probs=37.4
Q ss_pred CCCCccCCCCCCCeEEEecCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 3 DSGSCSSSSSSAFPIVMLPWF-AVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 3 ~~~~~~~~~~~~~~il~~~~~-~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++|+.+.....+.+|.|++.+ +.|=..-++.++..+..+|.+|.++.+..
T Consensus 16 ~~~~~~~~~~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 16 PRGSHMYLINQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp ---CCCCCCCCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred cCCccccccCCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 345554433455678888777 88999999999999999999999987654
No 314
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=22.82 E-value=78 Score=27.61 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHhCCCcEEEEc-Ccc--chHHHHHHcCCceEEEe
Q 012080 112 VIKAAKPRLLFYD-IAY--WMATISKSLSIKCIKYN 144 (471)
Q Consensus 112 ~l~~~~~Dlvi~D-~~~--~~~~~A~~~giP~v~~~ 144 (471)
.|.+++||+||.. ... -...--+..|+|++.+.
T Consensus 54 ~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 54 GILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 3446799999998 432 23344467899999774
No 315
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=22.72 E-value=96 Score=28.61 Aligned_cols=86 Identities=14% Similarity=0.036 Sum_probs=0.0
Q ss_pred hhhccCCCCCCcEEEEEeCcccc-CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEecccc
Q 012080 264 WDKWLGGFERSSVVYCAFGSQII-LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWV 342 (471)
Q Consensus 264 l~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~ 342 (471)
+...|.+++. +-.||-.+-.. ...+.++.-++.|+..|.++++--.......-+.. -++ ..-.
T Consensus 5 ~P~~L~~GD~--I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~-------------~Ra~ 68 (327)
T 4h1h_A 5 IPAKLKQGDE--IRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIR-------------SRVA 68 (327)
T ss_dssp CCCCCCTTCE--EEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHH-------------HHHH
T ss_pred cCCCCCCCCE--EEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHH-------------HHHH
Q ss_pred CchhhhcccCcceeecc-CCcchH
Q 012080 343 EQMPILEHSSVGCFVSH-CGFGSM 365 (471)
Q Consensus 343 pq~~lL~~~~v~~~ItH-gG~~s~ 365 (471)
...+.+.+++++++++- ||+|+.
T Consensus 69 dL~~a~~Dp~i~aI~~~rGG~g~~ 92 (327)
T 4h1h_A 69 DIHEAFNDSSVKAILTVIGGFNSN 92 (327)
T ss_dssp HHHHHHHCTTEEEEEESCCCSCGG
T ss_pred HHHHHhhCCCCCEEEEcCCchhHH
No 316
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=22.69 E-value=64 Score=29.03 Aligned_cols=38 Identities=3% Similarity=-0.036 Sum_probs=27.6
Q ss_pred CeEEEecCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVG---HMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~G---H~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
++|+++..+... .......++++|.++||+|.++.+..
T Consensus 2 m~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~~ 42 (316)
T 1gsa_A 2 IKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGD 42 (316)
T ss_dssp CEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGG
T ss_pred ceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchhH
Confidence 588998766432 12345679999999999998887653
No 317
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=22.69 E-value=1.3e+02 Score=25.28 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~ 146 (471)
+.+++.+||+||.|+ ...|..+++. ..+|++.++..
T Consensus 45 ~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 45 RSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 445567899999993 3356655543 25888877643
No 318
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.69 E-value=97 Score=17.64 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 413 SLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 413 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+|++.+++++... ........+|++++..
T Consensus 4 QLE~kVEeLl~~n----~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 4 QLEAKVEELLSKN----WNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh----HHHHHHHHHHHHHhhc
Confidence 4888899998532 1678888888887654
No 319
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=22.68 E-value=1.7e+02 Score=21.97 Aligned_cols=32 Identities=9% Similarity=0.124 Sum_probs=20.6
Q ss_pred CCCcEEEEcC---ccchHHHHHHc------CCceEEEecch
Q 012080 116 AKPRLLFYDI---AYWMATISKSL------SIKCIKYNVVC 147 (471)
Q Consensus 116 ~~~Dlvi~D~---~~~~~~~A~~~------giP~v~~~~~~ 147 (471)
.+||+||.|+ ..-|..+++.+ .+|.+.++...
T Consensus 51 ~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 51 ENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCC
Confidence 5799999993 33566555432 46777766543
No 320
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=22.67 E-value=1.1e+02 Score=23.13 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCcEEEEcC---ccchHHHHHHc-------CCceEEEec
Q 012080 108 QVEAVIKAAKPRLLFYDI---AYWMATISKSL-------SIKCIKYNV 145 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~---~~~~~~~A~~~-------giP~v~~~~ 145 (471)
...+.+++.+||+||.|. ...+..+.+.+ .+|++.++.
T Consensus 42 ~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 42 QCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 344556667899999993 33455544432 366666554
No 321
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=22.58 E-value=1.4e+02 Score=22.48 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=21.3
Q ss_pred CCCcEEEEcC---ccchHHHHHH-------cCCceEEEecch
Q 012080 116 AKPRLLFYDI---AYWMATISKS-------LSIKCIKYNVVC 147 (471)
Q Consensus 116 ~~~Dlvi~D~---~~~~~~~A~~-------~giP~v~~~~~~ 147 (471)
.+||+||.|. ...+..+++. ..+|++.++...
T Consensus 58 ~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 58 IHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 6899999993 3456665554 346777776543
No 322
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.55 E-value=90 Score=23.66 Aligned_cols=37 Identities=5% Similarity=-0.070 Sum_probs=24.4
Q ss_pred HHHHHHHh-CCCcEEEEcC---ccchHHHHHHc-----CCceEEEe
Q 012080 108 QVEAVIKA-AKPRLLFYDI---AYWMATISKSL-----SIKCIKYN 144 (471)
Q Consensus 108 ~l~~~l~~-~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~ 144 (471)
...+.+++ .+||+||.|+ ...|..+.+.+ .+|++.++
T Consensus 50 ~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 50 AFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 34445566 7899999993 34566666654 47777665
No 323
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=22.55 E-value=90 Score=28.17 Aligned_cols=38 Identities=13% Similarity=0.034 Sum_probs=31.1
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
..|+|..-++.|=..-...||..|+++|++|.++=.+.
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34555566888999999999999999999999885553
No 324
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=22.54 E-value=1.4e+02 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=26.1
Q ss_pred HHHHHHHhC--CCcEEEEc-C--ccchHHHHHHcCCceEEE
Q 012080 108 QVEAVIKAA--KPRLLFYD-I--AYWMATISKSLSIKCIKY 143 (471)
Q Consensus 108 ~l~~~l~~~--~~Dlvi~D-~--~~~~~~~A~~~giP~v~~ 143 (471)
.+.+.+++. ++|+|+.= . .+.+..+|+.+++|++..
T Consensus 89 ~la~~i~~~~~~~DvIvg~~~gGi~~A~~lA~~L~~p~~~v 129 (243)
T 3dez_A 89 GFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYI 129 (243)
T ss_dssp HHHHHHHHHCTTCCEEEEETTTTHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhhCCCCCEEEEecCchHHHHHHHHHHcCCCEEEE
Confidence 333444443 78998876 4 688888999999998754
No 325
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=22.53 E-value=2.2e+02 Score=25.39 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCcEEEEc-C--ccchHHHHHHcCCceEEE
Q 012080 106 RGQVEAVIKAAKPRLLFYD-I--AYWMATISKSLSIKCIKY 143 (471)
Q Consensus 106 ~~~l~~~l~~~~~Dlvi~D-~--~~~~~~~A~~~giP~v~~ 143 (471)
...+.+.+++.+..+|+++ . .-.+-.+|+..|++.+.+
T Consensus 215 l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 255 (284)
T 3cx3_A 215 LTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKTL 255 (284)
T ss_dssp HHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEEEe
Confidence 4567788888999999999 4 344566899999998754
No 326
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.50 E-value=1.1e+02 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 012080 30 PFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 30 p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
--.++|++|.++|++|+++..+.
T Consensus 36 iG~aiA~~~~~~Ga~V~l~~~~~ 58 (226)
T 1u7z_A 36 MGFAIAAAAARRGANVTLVSGPV 58 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCc
Confidence 34678999999999999986554
No 327
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=22.48 E-value=89 Score=29.18 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=34.6
Q ss_pred CCCeEEEe-cCCCccCHHHHHHHHHHHH--hCCCeEEEEeCCCc
Q 012080 13 SAFPIVML-PWFAVGHMTPFLHLSNKLA--EKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~-~~~~~GH~~p~~~la~~L~--~rGh~Vt~~~~~~~ 53 (471)
+...|+|+ .-++.|-..-...||..|+ ++|++|.++-.+..
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 34567777 4588899999999999999 99999999988864
No 328
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=22.40 E-value=98 Score=26.11 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=24.8
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|++|++. |+.|.+- ..|++.|.++||+|+.+.-..
T Consensus 4 m~~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLI--GASGFVG--SALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEE--TCCHHHH--HHHHHHHHTTTCEEEEECSCG
T ss_pred CCEEEEE--cCCchHH--HHHHHHHHHCCCEEEEEEcCc
Confidence 4576665 3344443 467899999999999987654
No 329
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=22.34 E-value=1.3e+02 Score=23.38 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=35.2
Q ss_pred hCCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 371 SDCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 371 ~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
..+|+|++--.. +.....+.. +.|+--.+.+. ++.++|.++|++++.
T Consensus 86 ~~ipvI~lTa~~-~~~~~~~~~-~~Ga~~yl~KP----~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEA-KREQIIEAA-QAGVNGYIVKP----FTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSC-CHHHHHHHH-HTTCCEEEESS----CCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCC-CHHHHHHHH-HCCCCEEEECC----CCHHHHHHHHHHHHh
Confidence 468988886544 455666677 78886666642 899999999999874
No 330
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=22.17 E-value=42 Score=32.88 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=23.9
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
|.+|+++-.+-.| +.-|..|+++|++|+++--.
T Consensus 1 Mk~VvVIGaG~~G-----L~aA~~La~~G~~V~VlEa~ 33 (501)
T 4dgk_A 1 MKPTTVIGAGFGG-----LALAIRLQAAGIPVLLLEQR 33 (501)
T ss_dssp CCCEEEECCHHHH-----HHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEECCcHHH-----HHHHHHHHHCCCcEEEEccC
Confidence 4577777444333 66788999999999998544
No 331
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=22.04 E-value=55 Score=32.30 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=27.8
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.++.||+++-.+..| +.+|+.|.++|++||++...+
T Consensus 40 ~~KprVVIIGgG~AG-----l~~A~~L~~~~~~VtLId~~~ 75 (502)
T 4g6h_A 40 SDKPNVLILGSGWGA-----ISFLKHIDTKKYNVSIISPRS 75 (502)
T ss_dssp CSSCEEEEECSSHHH-----HHHHHHSCTTTCEEEEEESSS
T ss_pred CCCCCEEEECCcHHH-----HHHHHHhhhCCCcEEEECCCC
Confidence 456799998655444 567899999999999998765
No 332
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=22.02 E-value=1.2e+02 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 13 SAFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 13 ~~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
+..+++++ +-++.|-..-...||..|+++|.+|.++-.+..
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34455555 347889999999999999999999999876643
No 333
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=21.97 E-value=4.5e+02 Score=23.83 Aligned_cols=126 Identities=10% Similarity=0.082 Sum_probs=66.6
Q ss_pred cEEEEEeCccccCCHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 275 SVVYCAFGSQIILEKKQFQELLLGLELT-GLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 275 ~vV~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
.+.+|+.|.+.. .++.++... +..++.+... -++........-++.. +-...++|..+++
T Consensus 6 rvgiiG~G~~g~-------~~~~~l~~~~~~~l~av~d~----------~~~~~~~~a~~~g~~~--~~~~~~~l~~~~~ 66 (344)
T 3euw_A 6 RIALFGAGRIGH-------VHAANIAANPDLELVVIADP----------FIEGAQRLAEANGAEA--VASPDEVFARDDI 66 (344)
T ss_dssp EEEEECCSHHHH-------HHHHHHHHCTTEEEEEEECS----------SHHHHHHHHHTTTCEE--ESSHHHHTTCSCC
T ss_pred EEEEECCcHHHH-------HHHHHHHhCCCcEEEEEECC----------CHHHHHHHHHHcCCce--eCCHHHHhcCCCC
Confidence 377888888752 345555444 5555555542 1121111111112222 4456778885555
Q ss_pred ceeeccCCcc----hHHHHHhhCCcEEe-cccccc--chhh-HHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhcc
Q 012080 354 GCFVSHCGFG----SMWESLMSDCQIVL-VPHLGD--QILN-TRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMDK 424 (471)
Q Consensus 354 ~~~ItHgG~~----s~~Eal~~GvP~v~-~P~~~D--Q~~n-a~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~~ 424 (471)
.+++----.. -+.+++.+|+++++ -|+..+ +-.- ...++ +.|+-+.+.... .+.+ ....+++++.+
T Consensus 67 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~-~~g~~~~v~~~~--r~~p--~~~~~k~~i~~ 140 (344)
T 3euw_A 67 DGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG-DGASKVMLGFNR--RFDP--SFAAINARVAN 140 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG-GGGGGEEECCGG--GGCH--HHHHHHHHHHT
T ss_pred CEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH-hcCCeEEecchh--hcCH--HHHHHHHHHhc
Confidence 5566544433 46788999999887 476543 3222 33344 777766666421 2444 34455566544
No 334
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=21.96 E-value=86 Score=28.00 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=30.1
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
.|.|..-|+.|-..-...||..|+++|++|.++=.+.
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4555456888999999999999999999998875443
No 335
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=21.95 E-value=72 Score=27.55 Aligned_cols=30 Identities=13% Similarity=0.042 Sum_probs=24.0
Q ss_pred CCcE-EEEc-C-ccchHHHHHHcCCceEEEecc
Q 012080 117 KPRL-LFYD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 117 ~~Dl-vi~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.||+ ||.| - ...++.=|.++|||+|.+.-+
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDT 181 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDT 181 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeC
Confidence 5888 6677 4 777788899999999988644
No 336
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=21.93 E-value=75 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.5
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
|.||.|+-.+.-| .++|+.|.++||+|++.-
T Consensus 3 M~kIgfIGlG~MG-----~~mA~~L~~~G~~v~v~d 33 (300)
T 3obb_A 3 MKQIAFIGLGHMG-----APMATNLLKAGYLLNVFD 33 (300)
T ss_dssp CCEEEEECCSTTH-----HHHHHHHHHTTCEEEEEC
T ss_pred cCEEEEeeehHHH-----HHHHHHHHhCCCeEEEEc
Confidence 5689998877666 478999999999999874
No 337
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=21.91 E-value=92 Score=28.48 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=26.9
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.++++|.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 29 ~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 29 PYARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred cCCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 345799999666555 56889999999999987544
No 338
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.89 E-value=1.1e+02 Score=26.23 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCCCCeEEEec-CCCc----cCHHH-HH-HHHHHHHhCCCeEEEEeC
Q 012080 11 SSSAFPIVMLP-WFAV----GHMTP-FL-HLSNKLAEKGHKITILLP 50 (471)
Q Consensus 11 ~~~~~~il~~~-~~~~----GH~~p-~~-~la~~L~~rGh~Vt~~~~ 50 (471)
+.+|+||+++. .|-. +-++- ++ .+++.|.+.||+|.+.-.
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL 68 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTV 68 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred cccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEEC
Confidence 36678999883 4432 33443 22 456667778999876543
No 339
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=21.80 E-value=1.4e+02 Score=26.06 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHhC--CCcEEEEc-C--ccchHHHHHHcCCceEEE
Q 012080 108 QVEAVIKAA--KPRLLFYD-I--AYWMATISKSLSIKCIKY 143 (471)
Q Consensus 108 ~l~~~l~~~--~~Dlvi~D-~--~~~~~~~A~~~giP~v~~ 143 (471)
.+.+.+++. ++|+|+.= . .+.+..+|+.+++|++..
T Consensus 77 ~la~~i~~~~~~~D~Ivg~~~gGi~~a~~lA~~L~~p~~~v 117 (234)
T 3m3h_A 77 GLEELIKEHFPTVEVIAGTATAGIAHAAWVSDRMDLPMCYV 117 (234)
T ss_dssp HHHHHHHHHCTTCCEEEEC---CHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeccchHHHHHHHHHHcCCCEEEE
Confidence 344444443 78998876 3 688888999999998754
No 340
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=21.76 E-value=85 Score=28.69 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.1
Q ss_pred CeEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAV--GHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~--GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.+|++++.++- |+ -+.+|+.|+.+|++|+++...
T Consensus 133 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~V~~~~ 168 (306)
T 3d3j_A 133 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 168 (306)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCcEEEEEec
Confidence 48999887654 44 378999999999999998654
No 341
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=21.68 E-value=55 Score=29.71 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=25.1
Q ss_pred CCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 12 SSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
..+++|.|+-.+..| ..+|..|+++||+|++....
T Consensus 5 ~~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 5 GTDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp --CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEECC
Confidence 345689998555444 46889999999999988543
No 342
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=21.66 E-value=62 Score=29.87 Aligned_cols=43 Identities=28% Similarity=0.214 Sum_probs=30.0
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFN 61 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~ 61 (471)
+++|+++-.+..| ..+|..|.++||+|+++......+.+.+.|
T Consensus 3 ~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g 45 (335)
T 3ghy_A 3 LTRICIVGAGAVG-----GYLGARLALAGEAINVLARGATLQALQTAG 45 (335)
T ss_dssp CCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCHHHHHHHHHTC
T ss_pred CCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEEChHHHHHHHHCC
Confidence 4589998666555 457889999999999998753333343334
No 343
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=21.54 E-value=1.2e+02 Score=27.91 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+|+|+ .-++.|-..-...||..|+++|++|.++-.+..
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3466666 558889999999999999999999999988765
No 344
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=21.53 E-value=1.6e+02 Score=25.68 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=28.6
Q ss_pred CCeEEEecCCC----------cc-CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFA----------VG-HMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~----------~G-H~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
|.||+++.... .| ...=+....+.|.+.|++|+++++..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45888874432 23 44567778889999999999999764
No 345
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=21.52 E-value=3.5e+02 Score=22.43 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCcceeeccCCcchHH
Q 012080 287 LEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSVGCFVSHCGFGSMW 366 (471)
Q Consensus 287 ~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v~~~ItHgG~~s~~ 366 (471)
..++.+.++++..+..+.++++...+. ...||.-+...+.-+-+=+. ...+ +=+|..+++
T Consensus 52 R~p~~l~~~~~~a~~~g~~ViIa~AG~------aa~LpgvvA~~t~~PVIgVP-----------~~~~---~l~G~dsLl 111 (183)
T 1o4v_A 52 RTPDRMFEYAKNAEERGIEVIIAGAGG------AAHLPGMVASITHLPVIGVP-----------VKTS---TLNGLDSLF 111 (183)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEES------SCCHHHHHHHHCSSCEEEEE-----------ECCT---TTTTHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCc------ccccHHHHHhccCCCEEEee-----------CCCC---CCCcHHHHH
Confidence 466677777776665666666555421 12355533222111111111 0111 346888888
Q ss_pred HHHhh--CCcEEeccccccchhhHHHHHHhhcceEEeecccCCcccHHHHHHHHHHHhc
Q 012080 367 ESLMS--DCQIVLVPHLGDQILNTRLLAEELKVAVEVEREENGWFSKESLCKAIKCVMD 423 (471)
Q Consensus 367 Eal~~--GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~t~~~l~~ai~~ll~ 423 (471)
..+-. |+|+-++ ..|-..||..+. ..= +. ++.++|.+++++...
T Consensus 112 SivqmP~GvpVatV--~Id~~~nAa~lA-aqI----la------~~d~~l~~kL~~~r~ 157 (183)
T 1o4v_A 112 SIVQMPGGVPVATV--AINNAKNAGILA-ASI----LG------IKYPEIARKVKEYKE 157 (183)
T ss_dssp HHHTCCTTCCCEEC--CTTCHHHHHHHH-HHH----HH------TTCHHHHHHHHHHHH
T ss_pred HHhcCCCCCeeEEE--ecCCchHHHHHH-HHH----Hh------cCCHHHHHHHHHHHH
Confidence 88888 9995444 456888998877 321 11 566778888876654
No 346
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.49 E-value=1.3e+02 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCcEEEEcC---ccchHHHHHH----cCCceEEEecch
Q 012080 108 QVEAVIKAAKPRLLFYDI---AYWMATISKS----LSIKCIKYNVVC 147 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~---~~~~~~~A~~----~giP~v~~~~~~ 147 (471)
...+.+++.+||+||.|+ ..-|..+++. -.+|++.++...
T Consensus 72 ~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 72 NGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 344556677899999993 3345555544 357887776543
No 347
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.48 E-value=65 Score=27.58 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=23.8
Q ss_pred CCcEEE-Ec-C-ccchHHHHHHcCCceEEEecc
Q 012080 117 KPRLLF-YD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 117 ~~Dlvi-~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.||+|| .| . ...+..=|.++|||+|.+.-+
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDT 147 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDS 147 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCC
Confidence 599855 56 4 777888899999999988754
No 348
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=21.45 E-value=76 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+|++|.|+-.+..| ..+|..|.++||+|+++...
T Consensus 2 ~m~~I~iiG~G~mG-----~~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 2 HMKQIAFIGLGHMG-----APMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp -CCEEEEECCSTTH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeecHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 46789998666555 36788999999999988543
No 349
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=21.44 E-value=1.5e+02 Score=25.74 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=25.5
Q ss_pred HHHHHHHHhC--CCcEEEEc-Cc---cchHH----HHHHcCCceEEEecc
Q 012080 107 GQVEAVIKAA--KPRLLFYD-IA---YWMAT----ISKSLSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~~--~~Dlvi~D-~~---~~~~~----~A~~~giP~v~~~~~ 146 (471)
+.+.++++++ +||+|++| .- +-... +.-.+++|+|.+.=+
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~ 140 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKS 140 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESS
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEec
Confidence 3455555554 69999999 42 22333 444568999987643
No 350
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=21.42 E-value=60 Score=27.45 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=23.1
Q ss_pred eEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 16 PIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 16 ~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+|++. |+.|-+- ..++++|.++||+|+.+.-..
T Consensus 2 ~ilIt--GatG~iG--~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 2 KIFIV--GSTGRVG--KSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEEEE--STTSHHH--HHHHHHHTTSSCEEEEEESSG
T ss_pred eEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECCc
Confidence 55554 3334333 578999999999999987654
No 351
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=21.31 E-value=81 Score=28.69 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=26.8
Q ss_pred CeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 15 FPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 15 ~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
++|+++..+ ....+++++.++||+|.++.....
T Consensus 3 m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~~ 35 (334)
T 2r85_A 3 VRIATYASH------SALQILKGAKDEGFETIAFGSSKV 35 (334)
T ss_dssp SEEEEESST------THHHHHHHHHHTTCCEEEESCGGG
T ss_pred eEEEEECCh------hHHHHHHHHHhCCCEEEEEECCCC
Confidence 588888765 567899999999999998887653
No 352
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=21.29 E-value=75 Score=27.99 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=26.9
Q ss_pred CeEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAV--GHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~--GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.+|++++.++- |+ -+.+|+.|+++|++|+++...
T Consensus 59 ~~v~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 94 (246)
T 1jzt_A 59 KHVFVIAGPGNNGGD---GLVCARHLKLFGYNPVVFYPK 94 (246)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEcC
Confidence 48999887654 34 378999999999999998653
No 353
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=21.26 E-value=2.8e+02 Score=25.95 Aligned_cols=88 Identities=6% Similarity=-0.074 Sum_probs=53.2
Q ss_pred eEEEecCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhh
Q 012080 16 PIVMLPWFAVG-HMTPFLHLSNKLAEKGHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSS 94 (471)
Q Consensus 16 ~il~~~~~~~G-H~~p~~~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 94 (471)
.++++++++.+ .-..+..+++.|.+.|.+|.+.+........ ..+.++.+..+- +
T Consensus 222 ~~Vlv~~Gs~~~~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~----~~~~~v~~~~~~-----------------~--- 277 (404)
T 3h4t_A 222 PPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRI----DEGDDCLVVGEV-----------------N--- 277 (404)
T ss_dssp CCEEECCTTSCCCTTHHHHHHHHHHHTTCCEEEECTTTTCCCS----SCCTTEEEESSC-----------------C---
T ss_pred CeEEEECCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCcccccc----cCCCCEEEecCC-----------------C---
Confidence 56777888777 4555777888888889998887765432211 112234443210 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhCCCcEEEEcCccchHHHHHHcCCceEEE
Q 012080 95 INLLVIAMDRCRGQVEAVIKAAKPRLLFYDIAYWMATISKSLSIKCIKY 143 (471)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~l~~~~~Dlvi~D~~~~~~~~A~~~giP~v~~ 143 (471)
..+++. +.|++|+.--.....-|-..|+|.+.+
T Consensus 278 --------------~~~ll~--~~d~~v~~gG~~t~~Eal~~GvP~v~~ 310 (404)
T 3h4t_A 278 --------------HQVLFG--RVAAVVHHGGAGTTTAVTRAGAPQVVV 310 (404)
T ss_dssp --------------HHHHGG--GSSEEEECCCHHHHHHHHHHTCCEEEC
T ss_pred --------------HHHHHh--hCcEEEECCcHHHHHHHHHcCCCEEEc
Confidence 011222 379999994333445667899999976
No 354
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=21.25 E-value=1e+02 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=30.1
Q ss_pred CCeEEEecCCCccCHHHHHHHH------HHHHhCC-CeEEEEeCCCc
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLS------NKLAEKG-HKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la------~~L~~rG-h~Vt~~~~~~~ 53 (471)
..+.+|++.|+.+.++.++..+ +.|.+.| .+|++.+....
T Consensus 27 ~~~~VlVtgGS~~~~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~ 73 (224)
T 2jzc_A 27 EEKALFVTCGATVPFPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNY 73 (224)
T ss_dssp CSCCEEEECCSCCSCHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSS
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCc
Confidence 3466777888887788887766 8888888 68888777654
No 355
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.11 E-value=1.3e+02 Score=25.97 Aligned_cols=41 Identities=7% Similarity=0.081 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCcEEEEcC---ccchHHHHHH-----cCCceEEEecchh
Q 012080 108 QVEAVIKAAKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVVCA 148 (471)
Q Consensus 108 ~l~~~l~~~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~~~ 148 (471)
...+.+++.+||+||.|+ ..-|..+++. ..+|++.++....
T Consensus 58 ~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 106 (250)
T 3r0j_A 58 QALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDS 106 (250)
T ss_dssp HHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTT
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 344455666899999993 4456665553 2578887776543
No 356
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.06 E-value=1.3e+02 Score=27.12 Aligned_cols=40 Identities=8% Similarity=0.114 Sum_probs=32.0
Q ss_pred CCeEEEe--cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCc
Q 012080 14 AFPIVML--PWFAVGHMTPFLHLSNKLAEKGHKITILLPRKA 53 (471)
Q Consensus 14 ~~~il~~--~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~~ 53 (471)
..+++++ +-++.|-..-...||..|++.|.+|.++-.+..
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 3455554 457889999999999999999999999876653
No 357
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=21.04 E-value=2.8e+02 Score=26.11 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=38.4
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccCChhHHHhhCCCcEEeccccCchhhhcccCc
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIALKPPTGASTVEEAFPDGFAERTKGRGVVCGEWVEQMPILEHSSV 353 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~nv~~~~~~pq~~lL~~~~v 353 (471)
+.+-+|++|.++ ..++..+...|.+++.. . +. .... .. ...+....++++.+++
T Consensus 120 ktvGIIGlG~IG-------~~vA~~l~a~G~~V~~~-d------------~~--~~~~-~~---~~~~~sl~ell~~aDi 173 (381)
T 3oet_A 120 RTIGIVGVGNVG-------SRLQTRLEALGIRTLLC-D------------PP--RAAR-GD---EGDFRTLDELVQEADV 173 (381)
T ss_dssp CEEEEECCSHHH-------HHHHHHHHHTTCEEEEE-C------------HH--HHHT-TC---CSCBCCHHHHHHHCSE
T ss_pred CEEEEEeECHHH-------HHHHHHHHHCCCEEEEE-C------------CC--hHHh-cc---CcccCCHHHHHhhCCE
Confidence 458899999987 45666666678876643 1 10 0000 00 1235667889999998
Q ss_pred ceeeccCCc
Q 012080 354 GCFVSHCGF 362 (471)
Q Consensus 354 ~~~ItHgG~ 362 (471)
++.|.-.
T Consensus 174 --V~l~~Pl 180 (381)
T 3oet_A 174 --LTFHTPL 180 (381)
T ss_dssp --EEECCCC
T ss_pred --EEEcCcC
Confidence 8888754
No 358
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=21.04 E-value=35 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCCCCCeEEEecCCCccCHHHHHHHHHHHHhC-----C-CeEEEEeC
Q 012080 10 SSSSAFPIVMLPWFAVGHMTPFLHLSNKLAEK-----G-HKITILLP 50 (471)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~~~la~~L~~r-----G-h~Vt~~~~ 50 (471)
|...+++|.|+-.|..| ..+|..|.++ | |+|+++..
T Consensus 4 m~~~~m~I~iiG~G~mG-----~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVG-----GYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp ---CCEEEEEECCSHHH-----HHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCCEEEEECcCHHH-----HHHHHHHHhCccccCCCCCEEEEEc
Confidence 55556799998666555 3568888888 9 99999876
No 359
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.95 E-value=1.3e+02 Score=25.35 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHH----cCCceEEEecchh
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKS----LSIKCIKYNVVCA 148 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~----~giP~v~~~~~~~ 148 (471)
+.+++.+||+||.|+ ...|..+++. -.+|++.++....
T Consensus 42 ~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~ 86 (230)
T 2oqr_A 42 AEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 (230)
T ss_dssp HHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHH
T ss_pred HHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCc
Confidence 344555899999993 3345555543 3688888876544
No 360
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=20.92 E-value=3.7e+02 Score=24.42 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=21.5
Q ss_pred CcEEEEEeCccccCCHHHHHHHHHHHHhcCCceEEE
Q 012080 274 SSVVYCAFGSQIILEKKQFQELLLGLELTGLCFLIA 309 (471)
Q Consensus 274 ~~vV~vs~Gs~~~~~~~~~~~~~~al~~~~~~~~~~ 309 (471)
+.+-++++|.++ ..+++.+...|.+++..
T Consensus 140 ~tvGIiG~G~IG-------~~vA~~l~~~G~~V~~~ 168 (315)
T 3pp8_A 140 FSVGIMGAGVLG-------AKVAESLQAWGFPLRCW 168 (315)
T ss_dssp CCEEEECCSHHH-------HHHHHHHHTTTCCEEEE
T ss_pred CEEEEEeeCHHH-------HHHHHHHHHCCCEEEEE
Confidence 459999999997 45666666678887644
No 361
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.92 E-value=1.4e+02 Score=22.43 Aligned_cols=39 Identities=5% Similarity=-0.112 Sum_probs=26.9
Q ss_pred CCCCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012080 11 SSSAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILL 49 (471)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~ 49 (471)
..+++||+++|..+.+--.-...+=++..++|.+|.+..
T Consensus 3 ~~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a 41 (108)
T 3nbm_A 3 ASKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANS 41 (108)
T ss_dssp --CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence 357789999988776544455566666667799988854
No 362
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=20.91 E-value=1.1e+02 Score=28.11 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=32.8
Q ss_pred CCCeEEEecC-CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 13 SAFPIVMLPW-FAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 13 ~~~~il~~~~-~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+..||+-+.. |+.|=..-...||..|+++|++|.++=.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3456666645 888999999999999999999999987664
No 363
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.82 E-value=1.3e+02 Score=25.14 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~ 146 (471)
+.+++.+||+||.|+ ...|..+++.+ .+|.+.++..
T Consensus 45 ~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~ 88 (215)
T 1a04_A 45 ELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVS 88 (215)
T ss_dssp HHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECC
T ss_pred HHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECC
Confidence 344556899999993 34566655543 4677766554
No 364
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=20.77 E-value=4.2e+02 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=24.4
Q ss_pred CeEEEe-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVML-PWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~-~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+||+++ |..+.+-...+...++.+..-|.+|.+++.+
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~ 39 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPR 39 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCS
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 488888 6565555566677777776556666666543
No 365
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=20.75 E-value=2.4e+02 Score=25.66 Aligned_cols=77 Identities=12% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCeEEEEeCCCchhhhccCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhHHHHHHHHHhCCCcEE
Q 012080 42 GHKITILLPRKAQTQLQHFNLHPDLITLHPLTVPHVDGLPAGAETASDVPMSSINLLVIAMDRCRGQVEAVIKAAKPRLL 121 (471)
Q Consensus 42 Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dlv 121 (471)
..+..++..+.+..+.+.+| ++...+- +...+ ...+ ......+.+.+++.+..+|
T Consensus 189 ~~~~~v~~H~af~Yfa~~yG-----l~~~~~~-----~~~~~----~eps-----------~~~l~~l~~~ik~~~v~~I 243 (312)
T 2o1e_A 189 EKKEFITQHTAFGYLAKEYG-----LKQVPIA-----GLSPD----QEPS-----------AASLAKLKTYAKEHNVKVI 243 (312)
T ss_dssp SCCEEEESSCTTHHHHHHTT-----CEEEECS-----SCCSS----SCCC-----------HHHHHHHHHHTTSSCCCEE
T ss_pred CCCEEEEECCchHHHHHHCC-----CeEEEee-----ccCCC----CCCC-----------HHHHHHHHHHHHHcCCCEE
Confidence 33445666667777778888 7765442 11111 1111 1234567778888899999
Q ss_pred EEc-C--ccchHHHHHHcCCceEEE
Q 012080 122 FYD-I--AYWMATISKSLSIKCIKY 143 (471)
Q Consensus 122 i~D-~--~~~~~~~A~~~giP~v~~ 143 (471)
+++ . .-.+-.+|+..|++.+.+
T Consensus 244 f~e~~~~~~~~~~ia~e~g~~v~~l 268 (312)
T 2o1e_A 244 YFEEIASSKVADTLASEIGAKTEVL 268 (312)
T ss_dssp ECSSCCCHHHHHHHHHHTCCEEECC
T ss_pred EEeCCCChHHHHHHHHHhCCcEEEe
Confidence 999 4 334566899999998644
No 366
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=20.70 E-value=94 Score=25.75 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=23.7
Q ss_pred HHHHhCCCcEEEEcC---ccchHHHHHHc-----CCceEEEecc
Q 012080 111 AVIKAAKPRLLFYDI---AYWMATISKSL-----SIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~~~~Dlvi~D~---~~~~~~~A~~~-----giP~v~~~~~ 146 (471)
+.+++.+||+||.|+ ...|..+++.+ ++|++.++..
T Consensus 42 ~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 42 EHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred HhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 344566899999993 34566655542 5888877654
No 367
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.69 E-value=63 Score=28.19 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCcEEE-Ec-C-ccchHHHHHHcCCceEEEecc
Q 012080 117 KPRLLF-YD-I-AYWMATISKSLSIKCIKYNVV 146 (471)
Q Consensus 117 ~~Dlvi-~D-~-~~~~~~~A~~~giP~v~~~~~ 146 (471)
.||+|| .| . ...++.=|..+|||+|.+.-+
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecC
Confidence 499965 45 4 677788899999999987643
No 368
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.66 E-value=1.8e+02 Score=21.97 Aligned_cols=36 Identities=11% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHh-CCCcEEEEcC-c---cchHHHHHH----cCCceEEEecc
Q 012080 111 AVIKA-AKPRLLFYDI-A---YWMATISKS----LSIKCIKYNVV 146 (471)
Q Consensus 111 ~~l~~-~~~Dlvi~D~-~---~~~~~~A~~----~giP~v~~~~~ 146 (471)
+.+++ .+||+||.|+ . ..|..+++. -.+|++.++..
T Consensus 43 ~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 43 EKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp HHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred HHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 34444 6899999993 3 455555543 46888776643
No 369
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.65 E-value=1.2e+02 Score=17.33 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=20.3
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHhhhcC
Q 012080 413 SLCKAIKCVMDKESEVGNVVRRNHAKWKGTLVS 445 (471)
Q Consensus 413 ~l~~ai~~ll~~~~~~~~~~~~~a~~l~~~~~~ 445 (471)
+|++.++++|... ........+|++++..
T Consensus 5 QLEdKVEeLl~~~----~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 5 QIEXKLEXILSXL----YHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhh----hHHHHHHHHHHHHHhc
Confidence 5888999998532 2677777888877643
No 370
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=20.59 E-value=92 Score=27.65 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.0
Q ss_pred CeEEEecCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 15 FPIVMLPWFAV--GHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 15 ~~il~~~~~~~--GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
.+|++++.++- |+ -+.+|+.|+.+|++|+++...
T Consensus 86 ~~vlVlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~~ 121 (259)
T 3d3k_A 86 PTVALLCGPHVKGAQ---GISCGRHLANHDVQVILFLPN 121 (259)
T ss_dssp CEEEEEECSSHHHHH---HHHHHHHHHHTTCEEEEECCB
T ss_pred CeEEEEECCCCCHHH---HHHHHHHHHHCCCeEEEEEec
Confidence 48999887654 34 378999999999999998654
No 371
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=20.55 E-value=1.3e+02 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLA-EKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~-~rGh~Vt~~~~~~ 52 (471)
|++.++++. +.|-+ -..+++.|. ++||+|+.+.-..
T Consensus 4 mmk~vlVtG-asg~i--G~~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 4 MYXYITILG-AAGQI--AQXLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp SCSEEEEES-TTSHH--HHHHHHHHHHHCCCEEEEEESSH
T ss_pred eEEEEEEEe-CCcHH--HHHHHHHHHhcCCceEEEEecCc
Confidence 456444443 33333 257889999 8999999887653
No 372
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=20.52 E-value=1.3e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=24.7
Q ss_pred EEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012080 17 IVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLP 50 (471)
Q Consensus 17 il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~ 50 (471)
|+|+..+...+-.....+++.|++.|++|.+++.
T Consensus 110 iil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~ 143 (192)
T 2x5n_A 110 VAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHI 143 (192)
T ss_dssp EEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEe
Confidence 4455554445677788899999999999887654
No 373
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=20.46 E-value=1.1e+02 Score=27.80 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012080 13 SAFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPR 51 (471)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~ 51 (471)
+..+|++. |+.|.+- ..|++.|.++||+|+.+...
T Consensus 10 ~~~~vlVT--GatG~iG--~~l~~~L~~~g~~V~~~~r~ 44 (342)
T 1y1p_A 10 EGSLVLVT--GANGFVA--SHVVEQLLEHGYKVRGTARS 44 (342)
T ss_dssp TTCEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEE--CCccHHH--HHHHHHHHHCCCEEEEEeCC
Confidence 34465554 3344443 45788999999999988754
No 374
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=20.44 E-value=95 Score=24.07 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=22.0
Q ss_pred HHHHHHHHh-CCCcEEEEcC---ccchHHHHHH-----cCCceEEEecc
Q 012080 107 GQVEAVIKA-AKPRLLFYDI---AYWMATISKS-----LSIKCIKYNVV 146 (471)
Q Consensus 107 ~~l~~~l~~-~~~Dlvi~D~---~~~~~~~A~~-----~giP~v~~~~~ 146 (471)
....+.+++ .+||+||.|. ...+..+.+. -.+|++.++..
T Consensus 39 ~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 39 SDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 344455666 7899999993 3334444433 25787766544
No 375
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=20.33 E-value=88 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=22.5
Q ss_pred eeeccCCcchHHHHHh------hCCcEEeccc
Q 012080 355 CFVSHCGFGSMWESLM------SDCQIVLVPH 380 (471)
Q Consensus 355 ~~ItHgG~~s~~Eal~------~GvP~v~~P~ 380 (471)
++|.-||=||+.|.+. .++|+.++|.
T Consensus 66 ~vv~~GGDGTl~~v~~~l~~~~~~~~l~iiP~ 97 (304)
T 3s40_A 66 LIIVFGGDGTVFECTNGLAPLEIRPTLAIIPG 97 (304)
T ss_dssp EEEEEECHHHHHHHHHHHTTCSSCCEEEEEEC
T ss_pred EEEEEccchHHHHHHHHHhhCCCCCcEEEecC
Confidence 3999999999999864 5799999996
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=20.26 E-value=1.7e+02 Score=23.94 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=31.3
Q ss_pred CCeEEEecCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012080 14 AFPIVMLPWFAVGHMTPFLHLSNKLAEKGHKITILLPRK 52 (471)
Q Consensus 14 ~~~il~~~~~~~GH~~p~~~la~~L~~rGh~Vt~~~~~~ 52 (471)
+.-|.++...+.|-..-+..|+..|.++|.+|.++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 334555666778999999999999999999998887665
Done!