Query 012081
Match_columns 471
No_of_seqs 212 out of 1342
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:25:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12738 PTCB-BRCT: twin BRCT 99.6 2.1E-15 4.5E-20 117.6 5.0 63 61-127 1-63 (63)
2 KOG1929 Nucleotide excision re 99.6 2.1E-14 4.5E-19 159.5 13.3 178 54-282 6-187 (811)
3 PF00533 BRCT: BRCA1 C Terminu 99.5 4.5E-14 9.8E-19 112.9 9.5 75 54-132 2-78 (78)
4 KOG1929 Nucleotide excision re 99.4 2.6E-12 5.7E-17 142.9 10.9 233 4-247 36-284 (811)
5 smart00292 BRCT breast cancer 99.3 4E-12 8.7E-17 100.2 7.9 76 56-135 1-80 (80)
6 cd00027 BRCT Breast Cancer Sup 99.3 8.3E-12 1.8E-16 96.2 7.9 70 60-133 1-72 (72)
7 KOG0966 ATP-dependent DNA liga 99.3 2.2E-11 4.8E-16 132.7 13.3 216 53-282 629-881 (881)
8 KOG3524 Predicted guanine nucl 99.3 2.7E-12 5.8E-17 137.7 5.8 175 53-281 114-291 (850)
9 PF00533 BRCT: BRCA1 C Terminu 99.2 2.6E-11 5.6E-16 96.9 7.4 71 197-270 3-78 (78)
10 KOG3226 DNA repair protein [Re 99.2 2.2E-11 4.7E-16 122.9 5.0 92 53-148 313-404 (508)
11 KOG4362 Transcriptional regula 99.1 8.7E-10 1.9E-14 120.1 12.1 186 56-277 473-682 (684)
12 smart00292 BRCT breast cancer 99.0 5.9E-10 1.3E-14 87.7 7.4 72 199-273 2-80 (80)
13 cd00027 BRCT Breast Cancer Sup 98.9 4.6E-09 1E-13 80.7 6.9 67 202-271 1-72 (72)
14 KOG3548 DNA damage checkpoint 98.7 6.3E-08 1.4E-12 107.3 9.5 196 56-276 924-1158(1176)
15 PLN03122 Poly [ADP-ribose] pol 98.6 6.9E-08 1.5E-12 108.7 8.8 89 53-146 185-278 (815)
16 PF12738 PTCB-BRCT: twin BRCT 98.6 3.3E-08 7.2E-13 76.9 3.5 60 203-265 1-63 (63)
17 PLN03123 poly [ADP-ribose] pol 98.6 1.1E-07 2.3E-12 109.3 7.8 90 53-146 389-481 (981)
18 KOG3226 DNA repair protein [Re 98.2 1.6E-06 3.5E-11 88.2 4.2 82 197-281 315-399 (508)
19 PRK14350 ligA NAD-dependent DN 98.0 1.4E-05 3E-10 89.2 8.2 74 55-132 591-665 (669)
20 PRK06063 DNA polymerase III su 97.9 2.4E-05 5.2E-10 80.1 7.9 73 56-132 231-305 (313)
21 PRK06195 DNA polymerase III su 97.9 4.6E-05 1E-09 77.8 9.6 79 55-133 218-307 (309)
22 KOG2043 Signaling protein SWIF 97.9 2E-05 4.3E-10 90.0 7.0 136 62-234 661-797 (896)
23 KOG2481 Protein required for n 97.9 8.7E-06 1.9E-10 86.0 3.5 83 197-283 325-415 (570)
24 COG0272 Lig NAD-dependent DNA 97.9 3.3E-05 7.1E-10 84.9 8.0 72 56-131 593-665 (667)
25 PRK07956 ligA NAD-dependent DN 97.8 4.8E-05 1E-09 85.1 8.8 75 56-134 589-664 (665)
26 PRK14351 ligA NAD-dependent DN 97.8 6.4E-05 1.4E-09 84.3 9.1 76 55-134 607-684 (689)
27 TIGR00575 dnlj DNA ligase, NAD 97.7 5.7E-05 1.2E-09 84.4 7.5 69 55-127 582-651 (652)
28 COG5163 NOP7 Protein required 97.7 3.3E-05 7.1E-10 79.5 3.9 89 197-289 348-447 (591)
29 PLN03122 Poly [ADP-ribose] pol 97.5 0.00028 6.1E-09 80.1 8.3 84 196-283 186-277 (815)
30 PLN03123 poly [ADP-ribose] pol 97.3 0.0005 1.1E-08 79.7 7.1 82 197-281 391-478 (981)
31 KOG2093 Translesion DNA polyme 97.1 0.00025 5.4E-09 79.3 2.2 199 53-282 43-243 (1016)
32 KOG0966 ATP-dependent DNA liga 97.0 0.0012 2.6E-08 73.5 7.0 82 197-280 631-718 (881)
33 COG5275 BRCT domain type II [G 96.5 0.009 2E-07 57.4 7.7 78 51-132 150-229 (276)
34 KOG0323 TFIIF-interacting CTD 96.3 0.0017 3.7E-08 71.7 1.9 93 54-149 438-534 (635)
35 KOG3524 Predicted guanine nucl 96.3 0.0039 8.4E-08 68.6 4.2 92 53-149 206-297 (850)
36 KOG2481 Protein required for n 95.7 0.011 2.4E-07 63.1 4.3 81 55-146 325-416 (570)
37 KOG2043 Signaling protein SWIF 95.3 0.019 4.1E-07 66.2 4.9 62 217-281 671-736 (896)
38 PRK14350 ligA NAD-dependent DN 94.5 0.1 2.2E-06 58.8 7.7 72 197-270 591-665 (669)
39 PRK06063 DNA polymerase III su 94.2 0.13 2.9E-06 52.7 7.4 70 198-270 231-305 (313)
40 PRK06195 DNA polymerase III su 94.2 0.12 2.5E-06 52.9 7.0 73 197-271 218-307 (309)
41 KOG3548 DNA damage checkpoint 94.2 0.063 1.4E-06 61.1 5.3 82 197-281 923-1033(1176)
42 PRK07956 ligA NAD-dependent DN 94.1 0.13 2.8E-06 58.0 7.5 73 198-272 589-664 (665)
43 COG5163 NOP7 Protein required 93.9 0.051 1.1E-06 56.6 3.7 82 54-146 347-440 (591)
44 PRK14351 ligA NAD-dependent DN 93.4 0.21 4.5E-06 56.6 7.7 74 197-272 607-684 (689)
45 COG0272 Lig NAD-dependent DNA 91.9 0.38 8.2E-06 53.7 7.0 71 198-270 593-666 (667)
46 TIGR00575 dnlj DNA ligase, NAD 91.8 0.3 6.5E-06 55.1 6.2 66 197-264 582-650 (652)
47 PRK05601 DNA polymerase III su 86.6 3.2 7E-05 43.7 8.7 75 56-134 293-369 (377)
48 KOG4362 Transcriptional regula 81.9 2.6 5.6E-05 47.4 5.9 78 200-282 475-561 (684)
49 COG5275 BRCT domain type II [G 78.8 7.1 0.00015 38.1 7.0 73 197-271 154-230 (276)
50 KOG0323 TFIIF-interacting CTD 71.2 2.1 4.5E-05 48.0 1.5 85 197-284 439-531 (635)
51 KOG2093 Translesion DNA polyme 70.1 6.2 0.00013 45.5 4.8 81 197-279 45-126 (1016)
52 PF14835 zf-RING_6: zf-RING of 45.1 6.9 0.00015 31.0 -0.1 17 8-24 19-35 (65)
53 PF15101 DUF4557: Domain of un 41.9 65 0.0014 31.2 5.9 68 200-275 1-77 (212)
54 PF14605 Nup35_RRM_2: Nup53/35 38.0 89 0.0019 23.3 5.0 36 62-97 3-38 (53)
55 PF09358 UBA_e1_C: Ubiquitin-a 37.2 19 0.00042 32.0 1.5 45 426-470 1-57 (125)
56 COG5067 DBF4 Protein kinase es 33.1 30 0.00065 36.6 2.3 51 53-103 118-168 (468)
57 COG5067 DBF4 Protein kinase es 32.1 33 0.00071 36.4 2.4 48 197-247 120-167 (468)
58 COG0289 DapB Dihydrodipicolina 27.3 60 0.0013 32.8 3.2 35 59-93 94-128 (266)
No 1
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.57 E-value=2.1e-15 Score=117.64 Aligned_cols=63 Identities=40% Similarity=0.736 Sum_probs=55.7
Q ss_pred cEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchH
Q 012081 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (471)
Q Consensus 61 lvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~W 127 (471)
++||+|||.+.+|..|.++|+.|||.|..+|++++|||||....++||+.|.+| +++||+++|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~----gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEW----GIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHC----TSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHC----CCcEECCCC
Confidence 589999999999999999999999999999999999999999999999999998 799999999
No 2
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.56 E-value=2.1e-14 Score=159.46 Aligned_cols=178 Identities=17% Similarity=0.255 Sum_probs=147.1
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
.+++|+|+.||.||+.+..++.|.+.+..+||.|...++++|||||+......||..|.. .+++|++..|+...+.
T Consensus 6 ~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~----~~~~~~~~~wi~~~~d 81 (811)
T KOG1929|consen 6 YSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHR----FDIKVLDSSWIDYIYD 81 (811)
T ss_pred cCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhc----CCCceecchHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999955544 5999999999999888
Q ss_pred cccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCCH
Q 012081 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (471)
Q Consensus 134 ~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~ 213 (471)
.+.. . ..-.+.+. +.+ . .....|.||.|++ .||+.
T Consensus 82 ~~~~-~-~e~~~~~~------------l~~-----~-------------------------~~~p~~~~~~Vc~-tgl~~ 116 (811)
T KOG1929|consen 82 LWLL-N-KEIRLLDP------------LRD-----T-------------------------MKCPGFFGLKVCL-TGLSG 116 (811)
T ss_pred Hhhh-h-ccCccCcc------------chh-----h-------------------------hcCCcccceEEEe-cccch
Confidence 7765 2 21111100 000 0 0135789999999 99999
Q ss_pred HHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchH-HHH---hcCCCceechhHHHHHHhhCCcCccCCcC
Q 012081 214 ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSV-QKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 214 ~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~-~k~---l~~~~~IVs~~WL~dcik~g~lqp~~~ys 282 (471)
.++..+..+|..+||+.... +...+.|+++.+... .+| +.++++||+.+|+++|+.++..++...|-
T Consensus 117 ~eK~ei~~~v~k~gg~~~~~--L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~~~~e 187 (811)
T KOG1929|consen 117 DEKSEIKILVPKHGGTLHRS--LSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLETKPYE 187 (811)
T ss_pred HHHHHHHHHhhhcccEEehh--hhhhhheeeeccccchHHHHHHHhhCCccccHHHHhhhhcccccccccccc
Confidence 99999999999999999999 688888888777433 454 57999999999999999999998876664
No 3
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.53 E-value=4.5e-14 Score=112.93 Aligned_cols=75 Identities=24% Similarity=0.555 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC--CCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF--GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~--~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
+.++|+|+.||++++...+|+.|.++|+.+||++...+++.+||||+... ...||..|... +++||+++||.||
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~----~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIAN----GIPIVSPDWIEDC 77 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHT----TSEEEETHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHC----CCeEecHHHHHHh
Confidence 45899999999999999999999999999999999999999999999988 78899999985 8999999999999
Q ss_pred H
Q 012081 132 V 132 (471)
Q Consensus 132 i 132 (471)
+
T Consensus 78 i 78 (78)
T PF00533_consen 78 I 78 (78)
T ss_dssp H
T ss_pred C
Confidence 6
No 4
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.35 E-value=2.6e-12 Score=142.92 Aligned_cols=233 Identities=16% Similarity=0.140 Sum_probs=155.8
Q ss_pred CCceEEEecCCcceeeccCccch--------hhhccccccccccC--CC-CCCCCcC-CC--CCCCCCCCCcEEEEeCCC
Q 012081 4 GGRVEVVSSKGCSRLFLGSVPSL--------RRLRGGVQSFESMS--PA-SSSLASD-SV--LPANAPFSGLVICVTGLS 69 (471)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~s~~~~--------r~~~~~lq~~~~~~--~~-~s~~~~~-~~--~~~~~iF~GlvI~vTG~~ 69 (471)
||++--+.+..|+||+.-+..+. -.+...-+|.+..- .. ...+..+ |. ...++.|.|+.||+|||.
T Consensus 36 Gg~~~~~~t~~~thli~~~~~s~~~~~a~~~~~~~~~~~wi~~~~d~~~~~~e~~~~~~l~~~~~~p~~~~~~Vc~tgl~ 115 (811)
T KOG1929|consen 36 GGIDFKDFTPSVTHLIVGSVTSSKYAAAHRFDIKVLDSSWIDYIYDLWLLNKEIRLLDPLRDTMKCPGFFGLKVCLTGLS 115 (811)
T ss_pred CceeeeccCCcCceeecccccccchhhhhcCCCceecchHHHHHHHHhhhhccCccCccchhhhcCCcccceEEEecccc
Confidence 45555677888888864443222 22223333333211 11 1333333 31 345689999999999999
Q ss_pred hhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceEecchHHHHHHHcccCCCCCccccccc
Q 012081 70 KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSI 148 (471)
Q Consensus 70 ~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~~lde~~Y~l~~~ 148 (471)
.++|.++..+|.+|||++...|..+++|+++..... +||+.|++| +++||+.+|+++|+.++..++.+.|++...
T Consensus 116 ~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~w----n~~v~~~~w~~~s~~~~~~~~~~~~e~~~~ 191 (811)
T KOG1929|consen 116 GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKW----NIPVVSDDWLFDSIEKTAVLETKPYEGAPV 191 (811)
T ss_pred hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhh----CCccccHHHHhhhhcccccccccccccccc
Confidence 999999999999999999999999888888877655 999999999 899999999999999999999999999863
Q ss_pred cccCcchhhhhcccCCcCCCCCCCCcccchhhc-cccccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCC
Q 012081 149 DEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQ-FNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEG 227 (471)
Q Consensus 149 ~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~-s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~G 227 (471)
.+....+.... +......+.....+.... ...+.+.+.........+..+|.+|+ .|++...+..|.++++.+|
T Consensus 192 ~~~is~~~~~~----~~~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~-s~~~~~~~s~l~r~~~~g~ 266 (811)
T KOG1929|consen 192 AEAISGPIGST----LPKEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVET-SGTTSRNRSALSRLSNNGG 266 (811)
T ss_pred cceeccCCccc----cccccccccchhhhccccchhcccccccchhhhhccccccceeee-cCCcccchhHhHHhhhccc
Confidence 33221110000 000000000000000000 00011122222223344789999999 9999999999999999999
Q ss_pred CEEEccccCCCCceEEEEcC
Q 012081 228 ATLVNQWFVGCGASYVVCEE 247 (471)
Q Consensus 228 G~v~d~~~~~~~vTHVVv~~ 247 (471)
|...+. ....++|++.++
T Consensus 267 ~~~~~e--~~e~~st~l~~~ 284 (811)
T KOG1929|consen 267 SLRFLE--RLEETSTSLLGD 284 (811)
T ss_pred ceeecc--cCccccchhhcc
Confidence 999888 588889999877
No 5
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.33 E-value=4e-12 Score=100.24 Aligned_cols=76 Identities=34% Similarity=0.570 Sum_probs=67.0
Q ss_pred CCCCCcEEEEeC-CChhhHHHHHHHHHHcCCEEcccCCC-CceEEEEecCCCHH--HHHHHhcCCCCCceEecchHHHHH
Q 012081 56 APFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRK--FEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 56 ~iF~GlvI~vTG-~~~~er~~L~~lI~~~GG~~~~~l~~-~~THLV~~~~~g~K--y~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
++|+|+.||++| +....+..+.++|..+||++...++. ++||+|+.+....+ +..|.. .+++||+++||.||
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~----~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIA----LGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHH----cCCCCccHHHHHHH
Confidence 479999999999 77899999999999999999999998 99999999876654 455655 48999999999999
Q ss_pred HHcc
Q 012081 132 VRRN 135 (471)
Q Consensus 132 ik~g 135 (471)
++.+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 9864
No 6
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.30 E-value=8.3e-12 Score=96.22 Aligned_cols=70 Identities=36% Similarity=0.612 Sum_probs=63.6
Q ss_pred CcEEEEeCCC-hhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHH-HHHHHhcCCCCCceEecchHHHHHHH
Q 012081 60 GLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRK-FEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 60 GlvI~vTG~~-~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~K-y~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
|+.|+++|.. ..++..|.++|..+||++...++..+||||+......+ +..|..+ +++||+++||.||++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~----~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKL----GIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHc----CCeEecHHHHHHHhC
Confidence 6889999998 79999999999999999999999999999999887665 7777764 899999999999984
No 7
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=99.29 E-value=2.2e-11 Score=132.70 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=131.1
Q ss_pred CCCCCCCCcEEEEe-CCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEE--ecCCCHHHHHHHhcCCCCCceEecchHH
Q 012081 53 PANAPFSGLVICVT-GLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVV--QSFGGRKFEHALKHGSRNGLYIVTLGWF 128 (471)
Q Consensus 53 ~~~~iF~GlvI~vT-G~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~--~~~~g~Ky~~A~k~~~~~gi~IV~p~WI 128 (471)
....+|.|+.|||- |... ..+..++++|.++||++..++.+..||+|+ +.....+..+|++ +++.||+|.||
T Consensus 629 ~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~----~~cdVl~p~Wl 704 (881)
T KOG0966|consen 629 KISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIK----RSCDVLKPAWL 704 (881)
T ss_pred chhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHh----ccCceeeHHHH
Confidence 35689999999994 6666 458999999999999999999999999996 3334444455555 38999999999
Q ss_pred HHHHHcccCCCCCccccccccccCc---------chhhhh------cccC-CcCCCCCC--CCcccchhhcccccccccc
Q 012081 129 VDSVRRNVRLSESLYTVKSIDEHGM---------HLDKLN------RLVG-FAGTENSC--LPAGIYEAKQFNATGKHER 190 (471)
Q Consensus 129 ~Dcik~g~~lde~~Y~l~~~~e~~~---------~~~~~~------~L~~-~s~~e~~~--lp~~I~es~~s~s~E~ld~ 190 (471)
+||++..+++++.++.+-.-.+... ..|.+. .|.. ++.++.+. +|... .-+.+-
T Consensus 705 ldcc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~~--------~~~~~~ 776 (881)
T KOG0966|consen 705 LDCCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPMG--------ASEKDS 776 (881)
T ss_pred HHHHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCchh--------hhhhhc
Confidence 9999999998877655432211100 001111 1111 01111100 00000 000010
Q ss_pred ccccCCCCCCCCcEEEE-eCC-CCHHHHHHHHHHHHhCCCEEEccc----cCCCCceEEEEcC--ch------HHHHh-c
Q 012081 191 DSNRSMNSTLSGCSMYV-DSD-VSEELRNKVFEAATNEGATLVNQW----FVGCGASYVVCEE--DS------VQKYM-G 255 (471)
Q Consensus 191 ~~~~~~~~lF~G~~Iyl-~~g-fs~~~r~~L~~lI~~~GG~v~d~~----~~~~~vTHVVv~~--~s------~~k~l-~ 255 (471)
.+.+. ..+|..++++. ..+ ++. +-..+.-.++.+||.+++.- +...++||+|+.. ++ .++.. .
T Consensus 777 ~e~r~-~~~~~~~~~f~~~~~~~~s-e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt 854 (881)
T KOG0966|consen 777 LERRF-SLFLSSLRMFYVLRRKLSS-EEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLT 854 (881)
T ss_pred HHHhh-ccccccceeeecccccccH-HHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhc
Confidence 11111 23344444443 222 333 33455566788899998763 2455679999864 11 12221 1
Q ss_pred CCCceechhHHHHHHhhCCcCccCCcC
Q 012081 256 HSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 256 ~~~~IVs~~WL~dcik~g~lqp~~~ys 282 (471)
...+||.+.||.+|+.++.++|+..|+
T Consensus 855 ~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 855 IKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred ccccccCHHHHHHhhcccccCccccCC
Confidence 222999999999999999999998774
No 8
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-12 Score=137.72 Aligned_cols=175 Identities=17% Similarity=0.263 Sum_probs=139.9
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
-.+-+|+|++.|+||+...+. .+-.+|+.|||.+..+++..+||+|+....++||..|+- +.+++.|+||..||
T Consensus 114 ly~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t-----~~~~~rp~wv~~aw 187 (850)
T KOG3524|consen 114 LYCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALV-----GVPTMRPDWVTEAW 187 (850)
T ss_pred ccchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEee-----ccceechHhhhhhh
Confidence 467899999999999998655 899999999999999999999999999999999999976 59999999999999
Q ss_pred HcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 012081 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs 212 (471)
+....+ .|.+.... +. ....-..|.|+.|+| .||+
T Consensus 188 ~~rn~~---yfda~~~~--------f~---------------------------------d~hrl~~feg~~~~f-~gF~ 222 (850)
T KOG3524|consen 188 KHRNDS---YFDAMEPC--------FV---------------------------------DKHRLGVFEGLSLFF-HGFK 222 (850)
T ss_pred cCcchh---hhhhhccc--------hh---------------------------------hhhccccccCCeEee-cCCc
Confidence 864322 22221100 00 001135799999999 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHh---cCCCceechhHHHHHHhhCCcCccCCc
Q 012081 213 EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 213 ~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l---~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
.++...+-+.....||++..+ +..+||||++++...... +....+|..+|++=+|..|..-.+..|
T Consensus 223 ~ee~~~m~~sle~~gg~~a~~---d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~y 291 (850)
T KOG3524|consen 223 QEEIDDMLRSLENTGGKLAPS---DTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNY 291 (850)
T ss_pred HHHHHHHHHHHHhcCCcccCC---CCCceeEeecCCccccccccccccceeecccceEEEEecchhccccce
Confidence 999999999999999999986 889999999985433222 456678999999988888765555555
No 9
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.23 E-value=2.6e-11 Score=96.91 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc--hHHHH---hcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--SVQKY---MGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~--s~~k~---l~~~~~IVs~~WL~dci 270 (471)
..+|+||.||| .+++...++.|.++|+.+||++... ....+||||+... ...++ ...+++||+++||.||+
T Consensus 3 ~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~~--~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 3 PKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTVSNS--FSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEEESS--SSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEee--cccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 57999999999 9999999999999999999999998 6999999999875 33333 36899999999999997
No 10
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.17 E-value=2.2e-11 Score=122.85 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=86.0
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
...++++|+++.++||.+.+|..|+.....||++|..+++..+|||||.-.++.||.+..- +|-.||+-+||.+|.
T Consensus 313 el~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g----~Gg~IV~keWI~~Cy 388 (508)
T KOG3226|consen 313 ELSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEG----NGGTIVSKEWITECY 388 (508)
T ss_pred hHHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhccc----CCceEeeHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999999999999876 478999999999999
Q ss_pred HcccCCCCCccccccc
Q 012081 133 RRNVRLSESLYTVKSI 148 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~ 148 (471)
+..++||...|.+...
T Consensus 389 ~~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 389 AQKKLLPIRRYLMHAG 404 (508)
T ss_pred HHHhhccHHHHHhcCC
Confidence 9999999999999643
No 11
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=99.06 E-value=8.7e-10 Score=120.15 Aligned_cols=186 Identities=18% Similarity=0.238 Sum_probs=132.8
Q ss_pred CCCC-CcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCceEecchHH
Q 012081 56 APFS-GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWF 128 (471)
Q Consensus 56 ~iF~-GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~------~g~Ky~~A~k~~~~~gi~IV~p~WI 128 (471)
.-|+ .++.+++|+++.++..|.+.++. +...+....+||+|+... .+.||..++. +|.||++++|+
T Consensus 473 ~~~~kk~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil----~gkwi~~~~w~ 545 (684)
T KOG4362|consen 473 HRFKKKLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGIL----RGKWILSYDWV 545 (684)
T ss_pred cCcccceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhh----cCceeeeHHHH
Confidence 3444 47899999999999999999988 778888889999999876 3466666655 59999999999
Q ss_pred HHHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEe
Q 012081 129 VDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVD 208 (471)
Q Consensus 129 ~Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~ 208 (471)
..|++.+++++|.+|++..............++. .....+.||.|..||+.
T Consensus 546 ~~s~k~~~~~~eepfEl~~d~~~~~~~~~~~~~~-----------------------------a~s~~~kLf~gl~~~~~ 596 (684)
T KOG4362|consen 546 LASLKLRKWVSEEPFELQIDVPGAREGPKEKRLR-----------------------------AESYKPKLFEGLKFYFV 596 (684)
T ss_pred HHHHHhcCCCCCCCeeEeecccCcccCccccccc-----------------------------ccccCcchhcCCcceee
Confidence 9999999999999999974321110000000000 00113689999999997
Q ss_pred CCCCHHHHHHHHHHHHhCCCEEEccc---cCCCCceEEEEcC-----c--------hHHHHh-cCCCceechhHHHHHHh
Q 012081 209 SDVSEELRNKVFEAATNEGATLVNQW---FVGCGASYVVCEE-----D--------SVQKYM-GHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 209 ~gfs~~~r~~L~~lI~~~GG~v~d~~---~~~~~vTHVVv~~-----~--------s~~k~l-~~~~~IVs~~WL~dcik 271 (471)
..|+....++|++++...||++...- ..+.+++-+++-. . +...+. ..+...|+..||+|++.
T Consensus 597 g~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a 676 (684)
T KOG4362|consen 597 GDFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIA 676 (684)
T ss_pred cccccCcHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchh
Confidence 78999889999999999999987541 1233444444322 0 122222 57889999999999996
Q ss_pred hCCcCc
Q 012081 272 EKHVQR 277 (471)
Q Consensus 272 ~g~lqp 277 (471)
-...+.
T Consensus 677 ~~~~~~ 682 (684)
T KOG4362|consen 677 GYQILV 682 (684)
T ss_pred ceeeee
Confidence 554443
No 12
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.04 E-value=5.9e-10 Score=87.74 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCC-CceEEEEcCchH-----HHHhcCCCceechhHHHHHHh
Q 012081 199 TLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGC-GASYVVCEEDSV-----QKYMGHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 199 lF~G~~Iyl~~g-fs~~~r~~L~~lI~~~GG~v~d~~~~~~-~vTHVVv~~~s~-----~k~l~~~~~IVs~~WL~dcik 271 (471)
+|+|+.||+ .| +....++.+.+++..+||++... ... .+||+|+.+... ..+...+++||+++||.||++
T Consensus 2 ~f~g~~~~~-~g~~~~~~~~~l~~~i~~~Gg~~~~~--~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 78 (80)
T smart00292 2 LFKGKVFVI-TGKFDKNERDELKELIEALGGKVTSS--LSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLK 78 (80)
T ss_pred ccCCeEEEE-eCCCCCccHHHHHHHHHHcCCEEecc--cCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHH
Confidence 799999999 56 88889999999999999999998 466 899999988432 333468899999999999998
Q ss_pred hC
Q 012081 272 EK 273 (471)
Q Consensus 272 ~g 273 (471)
++
T Consensus 79 ~~ 80 (80)
T smart00292 79 AG 80 (80)
T ss_pred Cc
Confidence 64
No 13
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.89 E-value=4.6e-09 Score=80.71 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=56.4
Q ss_pred CcEEEEeCCCC-HHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch----HHHHhcCCCceechhHHHHHHh
Q 012081 202 GCSMYVDSDVS-EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS----VQKYMGHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 202 G~~Iyl~~gfs-~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s----~~k~l~~~~~IVs~~WL~dcik 271 (471)
|+.||+ .|.. ...+..|.+++..+||++.+. ....+||+|+.... .......+++||+++||.||++
T Consensus 1 ~~~~~i-~g~~~~~~~~~l~~~i~~~Gg~v~~~--~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVI-TGDLPSEERDELKELIEKLGGKVTSS--VSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEE-EecCCCcCHHHHHHHHHHcCCEEecc--ccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 689999 6655 778899999999999999998 57899999998843 3344468999999999999984
No 14
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.67 E-value=6.3e-08 Score=107.25 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=114.2
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEccc-----CCCC---------------------ceEEEEecC-CCHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----LHPQ---------------------CTHLVVQSF-GGRKF 108 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~-----l~~~---------------------~THLV~~~~-~g~Ky 108 (471)
.+|.||+|.+|+.... +++.+..++.+||.+... |+.. --.||+... .+.||
T Consensus 924 niFd~cvF~lTsa~~s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KY 1002 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANRS-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKY 1002 (1176)
T ss_pred chhcceeEEEeccccc-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHH
Confidence 6999999999997753 345555666677775322 1110 123455443 46899
Q ss_pred HHHHhcCCCCCceEecchHHHHHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhcccccccc
Q 012081 109 EHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKH 188 (471)
Q Consensus 109 ~~A~k~~~~~gi~IV~p~WI~Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~l 188 (471)
..|++. |||+|++.||.+|+++++++|-.+|.++..-.... - ..+..+|.- .+..+++
T Consensus 1003 LeaLA~----giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rl--------d-------s~l~~~i~~---fn~~~nL 1060 (1176)
T KOG3548|consen 1003 LEALAR----GIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRL--------D-------SQLMPAIEP---FNPSENL 1060 (1176)
T ss_pred HHHHHc----CCCcccHHHHHHHHhccccccchhhcccCcccccc--------c-------cccccCccc---cCchhhc
Confidence 999996 89999999999999999999999999974321110 0 000000000 0000111
Q ss_pred ccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccC---CCCce----EEEEcC----chHHHHh-cC
Q 012081 189 ERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFV---GCGAS----YVVCEE----DSVQKYM-GH 256 (471)
Q Consensus 189 d~~~~~~~~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~---~~~vT----HVVv~~----~s~~k~l-~~ 256 (471)
-...-.. ...+.+..|.+ .|-...-.+.+...+..+|+-+++..+. +.+.+ -||+.+ .+..+++ .-
T Consensus 1061 kd~~l~v-k~~l~~~~v~q-~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l 1138 (1176)
T KOG3548|consen 1061 KDTTLYV-KSTLSAREVTQ-TGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTL 1138 (1176)
T ss_pred cceeeEe-eccccceeEEE-ecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHh
Confidence 0000000 11233333333 2333445677778888888888877321 11111 133333 3566666 47
Q ss_pred CCceechhHHHHHHhhCCcC
Q 012081 257 SNNLVTPVWVLKTAKEKHVQ 276 (471)
Q Consensus 257 ~~~IVs~~WL~dcik~g~lq 276 (471)
+.++|+++||.+||-.|.-.
T Consensus 1139 ~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1139 GAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred CCCccChhHhheeeeccccC
Confidence 89999999999999887643
No 15
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.63 E-value=6.9e-08 Score=108.72 Aligned_cols=89 Identities=26% Similarity=0.480 Sum_probs=78.6
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCC----C-HHHHHHHhcCCCCCceEecchH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG----G-RKFEHALKHGSRNGLYIVTLGW 127 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~----g-~Ky~~A~k~~~~~gi~IV~p~W 127 (471)
...++|.|++|++||.....|.+++++|+.+||++...+ ..+||+|+.... + .|++.|.+. ||+||+.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~l----gIpIVsEd~ 259 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMER----GIPVVREAW 259 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHc----CCcCccHHH
Confidence 455789999999999777799999999999999999999 667788887743 3 799999986 899999999
Q ss_pred HHHHHHcccCCCCCccccc
Q 012081 128 FVDSVRRNVRLSESLYTVK 146 (471)
Q Consensus 128 I~Dcik~g~~lde~~Y~l~ 146 (471)
|.+|++.++.+++..|.+.
T Consensus 260 L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHHhcCCcccchhhhhc
Confidence 9999999999999999884
No 16
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.60 E-value=3.3e-08 Score=76.90 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=48.8
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHh---cCCCceechhH
Q 012081 203 CSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVW 265 (471)
Q Consensus 203 ~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l---~~~~~IVs~~W 265 (471)
++|++ +||++.++..|.++++.+||.+.++ +..++||+|+......||. .++++||+++|
T Consensus 1 ~~i~~-sg~~~~~~~~l~~~i~~~Gg~~~~~--lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICF-SGFSGKERSQLRKLIEALGGKYSKD--LTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEE-EEB-TTTCCHHHHHHHCTT-EEESS--SSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEE-CCCCHHHHHHHHHHHHHCCCEEecc--ccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 47888 9999999999999999999999999 6999999999886666554 68899999999
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.56 E-value=1.1e-07 Score=109.25 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC---CCHHHHHHHhcCCCCCceEecchHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~---~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
...++|.|+.|++.|-.+..+.+++++|+.+||+|+..++..+||||+... .+.|++.|.+. +|+||+.+||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~----~ipIVsedwL~ 464 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRM----KIPIVREDYLV 464 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhc----CCCcccHHHHH
Confidence 455899999999999888888999999999999999999999999999863 46789999885 79999999999
Q ss_pred HHHHcccCCCCCccccc
Q 012081 130 DSVRRNVRLSESLYTVK 146 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l~ 146 (471)
||++.+..+++..|.+.
T Consensus 465 ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 465 DCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHhccccCcchhhhhc
Confidence 99999999999888774
No 18
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.15 E-value=1.6e-06 Score=88.17 Aligned_cols=82 Identities=20% Similarity=0.408 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHH---hcCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~---l~~~~~IVs~~WL~dcik~g 273 (471)
+.|+.|..|.| +||....|..|+.....+|+++-.+| +.++||+||.=...-|| .+.+-+||+-+||.+|...+
T Consensus 315 ~klL~GVV~Vl-SGfqNP~Rs~LRskAl~LGAkY~pDW--~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~k 391 (508)
T KOG3226|consen 315 SKLLEGVVFVL-SGFQNPERSTLRSKALTLGAKYQPDW--NAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQK 391 (508)
T ss_pred HHhhhceEEEE-ecccCchHHHHHHHHHhhcccccCCc--CCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHH
Confidence 67999999999 99999999999999999999999998 99999999977555555 46888999999999999999
Q ss_pred CcCccCCc
Q 012081 274 HVQRLVHI 281 (471)
Q Consensus 274 ~lqp~~~y 281 (471)
+++|...|
T Consensus 392 k~lp~rrY 399 (508)
T KOG3226|consen 392 KLLPIRRY 399 (508)
T ss_pred hhccHHHH
Confidence 99997666
No 19
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.00 E-value=1.4e-05 Score=89.16 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCCCcEEEEeC-CChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 55 ~~iF~GlvI~vTG-~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
..+|.|.+||+|| +....|.+++++|+++||++...+++++++||++...|.|+++|.+. ||+|++.+.+.+-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~L----GI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNL----GIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHc----CCEEecHHHHHHHh
Confidence 3579999999999 55578999999999999999999999999999999899999999996 89999999887743
No 20
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.93 E-value=2.4e-05 Score=80.09 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC--HHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g--~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
++|.|.+|++||-....|.+++++|+.+||++...+++++++||++...+ .|.++|.+. ||+|++.+=+.+-+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~----gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL----GVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc----CCccccHHHHHHHH
Confidence 45799999999966689999999999999999999999999999998877 799999996 89999988777655
No 21
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.91 E-value=4.6e-05 Score=77.78 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCCCCcEEEEeCCC-hhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC---------CCHHHHHHHhcC-CCCCceEe
Q 012081 55 NAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---------GGRKFEHALKHG-SRNGLYIV 123 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~-~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~---------~g~Ky~~A~k~~-~~~gi~IV 123 (471)
..+|.|.+||+||-. ...|.++.++|+.+||++..++++++++||++.. .+.|+++|.+.. .-.+|+|+
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 357999999999965 5799999999999999999999999999999853 478999998741 01489999
Q ss_pred cchHHHHHHH
Q 012081 124 TLGWFVDSVR 133 (471)
Q Consensus 124 ~p~WI~Dcik 133 (471)
+.+=+.+-++
T Consensus 298 ~E~~f~~l~~ 307 (309)
T PRK06195 298 NEEEFLQKCK 307 (309)
T ss_pred cHHHHHHHHh
Confidence 9876665443
No 22
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.89 E-value=2e-05 Score=90.00 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=97.1
Q ss_pred EEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHHHcccCCCC
Q 012081 62 VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSE 140 (471)
Q Consensus 62 vI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~~lde 140 (471)
.+.++++. +...++..++.+||.+.... .+.||+|+... .+.|+..|+.. |++||+++||.+|++.|.++|+
T Consensus 661 ~~lfs~~~--~~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~----G~~ivT~~wL~s~~k~g~~~de 733 (896)
T KOG2043|consen 661 EVLFSDKN--DGKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISS----GKPLVTPQWLVSSLKSGEKLDE 733 (896)
T ss_pred eeeeeecc--CchhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhcc----CCcccchHHHHHHhhccccccC
Confidence 34445543 34467888999998877776 57899999876 57899999885 7899999999999999999999
Q ss_pred CccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHH
Q 012081 141 SLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVF 220 (471)
Q Consensus 141 ~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~~~r~~L~ 220 (471)
+.|.+.+...-... .++....+. ..+. ..+|.|..||+.+.+.+ ....+-
T Consensus 734 k~yil~D~ekEk~~--gf~l~ssl~--------------------------RAr~-~plL~g~~v~vtp~v~p-~~~~v~ 783 (896)
T KOG2043|consen 734 KPYILHDEEKEKEF--GFRLKSSLL--------------------------RARA-DPLLEGINVHVTPSVTP-SPKTVV 783 (896)
T ss_pred ccccccCHHHHhcc--CcchhhHHH--------------------------Hhhc-chhhcCceEEecccccc-CcchhH
Confidence 99999764311100 000000000 0001 36899999999665554 457899
Q ss_pred HHHHhCCCEEEccc
Q 012081 221 EAATNEGATLVNQW 234 (471)
Q Consensus 221 ~lI~~~GG~v~d~~ 234 (471)
++|...||.++...
T Consensus 784 eiie~~ggnvv~~~ 797 (896)
T KOG2043|consen 784 EIIEISGGNVVSDS 797 (896)
T ss_pred HHHhhcCcceeccc
Confidence 99999999999873
No 23
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.87 E-value=8.7e-06 Score=86.02 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc--------cCCCCceEEEEcCchHHHHhcCCCceechhHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW--------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLK 268 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~--------~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~d 268 (471)
..+|+|+.|||....+ ++.|.-+|+++||.|.-+- ..++.+||=||..+..+.-. -+...|.|+||+|
T Consensus 325 kslF~glkFfl~reVP---resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-~gR~YvQPQWvfD 400 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP---RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-IGRTYVQPQWVFD 400 (570)
T ss_pred HHHhhcceeeeeccCc---hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-eeeeeecchhhhh
Confidence 6799999999965555 5778999999999998551 12466799999886543322 2455789999999
Q ss_pred HHhhCCcCccCCcCh
Q 012081 269 TAKEKHVQRLVHISA 283 (471)
Q Consensus 269 cik~g~lqp~~~ys~ 283 (471)
|++++.++|...|-+
T Consensus 401 svNar~llpt~~Y~~ 415 (570)
T KOG2481|consen 401 SVNARLLLPTEKYFP 415 (570)
T ss_pred hccchhhccHhhhCC
Confidence 999999999888743
No 24
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.87 E-value=3.3e-05 Score=84.91 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeCCC-hhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 56 APFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 56 ~iF~GlvI~vTG~~-~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
.+|.|.+|++||-- .-.|.+++++++.+||+++..++++++.||++...|.|+.+|.+. ||+|++.+++..-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eL----gv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQEL----GVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHc----CCeEecHHHHHHh
Confidence 78999999999955 489999999999999999999999999999999999999999996 8999999988754
No 25
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.83 E-value=4.8e-05 Score=85.10 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHHc
Q 012081 56 APFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~ 134 (471)
..|.|.+||+||... -.|.++.++|+.+||++...+++++++||++...|.|.++|.+. ||+|++.+-+.+.+..
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~l----gI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQEL----GIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHc----CCeEEcHHHHHHHHhc
Confidence 359999999999775 59999999999999999999999999999999889999999996 8999999999887654
No 26
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.80 E-value=6.4e-05 Score=84.28 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
..+|.|.+||+||... -.|.+++++|+.+||++..++++++++||++...| .|.++|.+. ||+|++.+-+.+-+
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~l----gi~ii~E~~f~~ll 682 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEAN----DVPTLDEEEFEELL 682 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHC----CCeEecHHHHHHHH
Confidence 4579999999999765 69999999999999999999999999999999888 799999985 89999999998877
Q ss_pred Hc
Q 012081 133 RR 134 (471)
Q Consensus 133 k~ 134 (471)
+.
T Consensus 683 ~~ 684 (689)
T PRK14351 683 AE 684 (689)
T ss_pred Hh
Confidence 64
No 27
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.74 E-value=5.7e-05 Score=84.35 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=62.5
Q ss_pred CCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchH
Q 012081 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~W 127 (471)
..+|.|.+||+||... ..|.+++++|+.+||++..++++++++||++...|.|+++|.+. ||+|++.+.
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~l----gi~ii~E~~ 651 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQEL----GIPIINEEE 651 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHc----CCcEechhh
Confidence 3579999999999654 78999999999999999999999999999999889999999996 899998653
No 28
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=3.3e-05 Score=79.49 Aligned_cols=89 Identities=12% Similarity=0.264 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc---------cCCCCceEEEEcCchHHHHhcCCCceechhHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW---------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVL 267 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~---------~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~ 267 (471)
..+|+|+.||+...++. ..|+-+|.++||.|+.+- ..+..+||-||..+-++.-. .+...|.|+||+
T Consensus 348 ~slFS~f~FyisreVp~---dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv-egrtYiQPQw~f 423 (591)
T COG5163 348 KSLFSGFKFYISREVPG---DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV-EGRTYIQPQWLF 423 (591)
T ss_pred hhhhhceEEEEeccccc---hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh-cceeeechHHHH
Confidence 57999999999655553 568889999999998651 14667899999887654433 356778999999
Q ss_pred HHHhhCCcCccCCcC--hHHHhhh
Q 012081 268 KTAKEKHVQRLVHIS--ADLARQV 289 (471)
Q Consensus 268 dcik~g~lqp~~~ys--~dl~r~~ 289 (471)
|||..|.+.+...|. ..|.+|+
T Consensus 424 DsiNkG~l~~~~~Y~~G~~LPpHl 447 (591)
T COG5163 424 DSINKGKLACVENYCVGKRLPPHL 447 (591)
T ss_pred hhhccccchhhhhccccccCCCCc
Confidence 999999999998885 3456665
No 29
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.47 E-value=0.00028 Score=80.09 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=69.2
Q ss_pred CCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc--------hHHHHhcCCCceechhHHH
Q 012081 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--------SVQKYMGHSNNLVTPVWVL 267 (471)
Q Consensus 196 ~~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~--------s~~k~l~~~~~IVs~~WL~ 267 (471)
....|.|+.|.|...|+. .|..++++|..+||++..+ + .++||+|+.+. .++++...+++||+.+||+
T Consensus 186 ~~kpL~G~~fviTGtl~~-sr~elK~~Ie~~GGkvsss--V-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~ 261 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR-THQYWKKDIEKHGGKVANS--V-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLI 261 (815)
T ss_pred cCCCcCCcEEEEeCCCCC-CHHHHHHHHHHcCCEEccc--c-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHH
Confidence 356799999999444655 7889999999999999999 4 77889988662 2455567899999999999
Q ss_pred HHHhhCCcCccCCcCh
Q 012081 268 KTAKEKHVQRLVHISA 283 (471)
Q Consensus 268 dcik~g~lqp~~~ys~ 283 (471)
+|++.+..+++..|..
T Consensus 262 d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 262 DSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHhcCCcccchhhhh
Confidence 9999999999887743
No 30
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.26 E-value=0.0005 Score=79.66 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=66.2
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------hHHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------s~~k~l~~~~~IVs~~WL~dci 270 (471)
...|.|+.|.+...|+ .....+++.|..+||++... +...+||||+..+ .++++...+++||+.+||.||+
T Consensus 391 ~~~l~~~~i~i~G~~~-~~~~~~k~~Ie~~GG~~s~~--v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 391 SEFLGDLKVSIVGASK-EKVTEWKAKIEEAGGVFHAT--VKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred CCCcCCeEEEEecCCC-CcHHHHHHHHHhcCCEEeee--ccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 5779999999944455 44588999999999999999 6889999998762 2344445689999999999999
Q ss_pred hhCCcCccCCc
Q 012081 271 KEKHVQRLVHI 281 (471)
Q Consensus 271 k~g~lqp~~~y 281 (471)
+.+..+|...|
T Consensus 468 ~~~~~~p~~~y 478 (981)
T PLN03123 468 KKKKKLPFDKY 478 (981)
T ss_pred hccccCcchhh
Confidence 99987777655
No 31
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=97.08 E-value=0.00025 Score=79.27 Aligned_cols=199 Identities=10% Similarity=0.098 Sum_probs=119.6
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEc-ccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYS-PDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~-~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
.....|+|+-||+.|...+...++++.-.-+||.+. .+....++|+|+......|.+-. ..=+..+++|+.+|
T Consensus 43 t~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk~~------~~~~~~~~e~iie~ 116 (1016)
T KOG2093|consen 43 TGSSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVKGF------TIPKHISIEWIIEC 116 (1016)
T ss_pred CCcceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhccc------cchhhhcHHHHHHH
Confidence 356899999999999999999999999999999998 55556899999988754443322 23467899999999
Q ss_pred HHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCC
Q 012081 132 VRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV 211 (471)
Q Consensus 132 ik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gf 211 (471)
+++++.+.-.+|............ +... .. +.|.. -.....+..+|.++.|++ .|.
T Consensus 117 ~~~~~~~~~~~~~~~t~~~h~q~~-----~~~~---~~-~~~~D--------------~q~~~~~~ki~~~n~iki-nG~ 172 (1016)
T KOG2093|consen 117 CENGMDVGYYPYQLYTGQSHEQAQ-----LAFP---VT-SFPKD--------------QQISSQSSKIFKNNVIKI-NGY 172 (1016)
T ss_pred HhccCccccccceeeccchhcccc-----cCCC---cc-cCCcc--------------ccccccchhccccceeee-cCC
Confidence 999999888777765433222110 0000 00 00000 000111356899999999 888
Q ss_pred CHHHHHHHH-HHHHhCCCEEEccccCCCCceEEEEcCchHHHHhcCCCceechhHHHHHHhhCCcCccCCcC
Q 012081 212 SEELRNKVF-EAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 212 s~~~r~~L~-~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~dcik~g~lqp~~~ys 282 (471)
+.+..-.|. -....+++...+.-...+.++|.+.++.-..++ -.+...++|.|+.+.+..-...+...||
T Consensus 173 ~E~~~~dlepp~gv~~d~~~~~~~~~rd~v~~~l~~~~l~n~~-f~n~~~~sP~~~~~k~~~a~~~~~~~~S 243 (1016)
T KOG2093|consen 173 NEPESLDLEPPSGVLHDKAEDDSTSARDHVDHELAGNLLLNKR-FVNIENTSPDWIVDKELTAHTGTGQNYS 243 (1016)
T ss_pred CCccccccCCCcccccchhhhhhhhHHHHHHHHhccccccccc-cceeeecCchhhhhhhhhhccCCccccc
Confidence 755431222 111111222222111233344444332100111 1345678899999998876666666665
No 32
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.04 E-value=0.0012 Score=73.49 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEeCCCCHHH-HHHHHHHHHhCCCEEEccccCCCCceEEEE--cCch-HH--HHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEEL-RNKVFEAATNEGATLVNQWFVGCGASYVVC--EEDS-VQ--KYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~-r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv--~~~s-~~--k~l~~~~~IVs~~WL~dci 270 (471)
..+|+|..||+-+|.+... +..|+++|..+||.++.+ +....||.|+ +..+ .. ..+.....||.|.||+||.
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~n--v~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc 708 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQN--VGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCC 708 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEc--CCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHH
Confidence 5789999999977776554 689999999999999998 6777888886 3332 22 2336789999999999999
Q ss_pred hhCCcCccCC
Q 012081 271 KEKHVQRLVH 280 (471)
Q Consensus 271 k~g~lqp~~~ 280 (471)
...+++|..+
T Consensus 709 ~~~~l~p~~P 718 (881)
T KOG0966|consen 709 KKQRLLPWLP 718 (881)
T ss_pred hhhhcccccc
Confidence 9999888643
No 33
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.52 E-value=0.009 Score=57.43 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=66.4
Q ss_pred CCCCCCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceEecchHH
Q 012081 51 VLPANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWF 128 (471)
Q Consensus 51 ~~~~~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~IV~p~WI 128 (471)
|......+.|++|.+||... -+|..-..+|..+||+++...+..+|+||.++..| .|.+.+..+ +|+++..+=|
T Consensus 150 peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKql----kIkaidEegf 225 (276)
T COG5275 150 PEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQL----KIKAIDEEGF 225 (276)
T ss_pred CCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHh----CCccccHHHH
Confidence 34566889999999999877 88999999999999999999999999999998866 578888876 8999887766
Q ss_pred HHHH
Q 012081 129 VDSV 132 (471)
Q Consensus 129 ~Dci 132 (471)
..-|
T Consensus 226 ~~LI 229 (276)
T COG5275 226 DSLI 229 (276)
T ss_pred HHHH
Confidence 5444
No 34
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.32 E-value=0.0017 Score=71.74 Aligned_cols=93 Identities=20% Similarity=0.381 Sum_probs=80.2
Q ss_pred CCCCCCCcEEEEeCCCh----hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHH
Q 012081 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~----~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
....++|+.+.++|+.+ .++..+-.....+|....++++..+||+|+.+..+.|..+|... +.++||++.|++
T Consensus 438 ~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~---~~~~Vv~~~wl~ 514 (635)
T KOG0323|consen 438 RTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVS---GSAKVVNAAWLW 514 (635)
T ss_pred hhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccc---cceeEechhHHH
Confidence 45689999999999765 45567777778899999999999999999999999998888775 359999999999
Q ss_pred HHHHcccCCCCCcccccccc
Q 012081 130 DSVRRNVRLSESLYTVKSID 149 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l~~~~ 149 (471)
.|+.++..++|..|.+....
T Consensus 515 ~~~e~w~~v~ek~~~l~~~~ 534 (635)
T KOG0323|consen 515 RSLEKWGKVEEKLEPLDDDQ 534 (635)
T ss_pred HHHHHhcchhcccccccccc
Confidence 99999999999999887543
No 35
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=96.27 E-value=0.0039 Score=68.55 Aligned_cols=92 Identities=24% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
.....|.|+.||+-||..++...+....+..||++.. -+..|||||+......---.+.. ....+|..+|++=++
T Consensus 206 hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s----~~~~~vk~ewfw~si 280 (850)
T KOG3524|consen 206 HRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVS----SNQVHVKKEWFWVSI 280 (850)
T ss_pred hccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCcccccccccc----ccceeecccceEEEE
Confidence 4578999999999999999999999999999999999 45689999998765432222322 367899999999999
Q ss_pred HcccCCCCCcccccccc
Q 012081 133 RRNVRLSESLYTVKSID 149 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~ 149 (471)
.+|.+..|..|.+....
T Consensus 281 q~g~~a~e~~yl~~~~~ 297 (850)
T KOG3524|consen 281 QRGCCAIEDNYLLPTGK 297 (850)
T ss_pred ecchhccccceeccccc
Confidence 99999999999887653
No 36
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=95.68 E-value=0.011 Score=63.14 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=61.8
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccC-C---------CCceEEEEecCC-CHHHHHHHhcCCCCCceEe
Q 012081 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDL-H---------PQCTHLVVQSFG-GRKFEHALKHGSRNGLYIV 123 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l-~---------~~~THLV~~~~~-g~Ky~~A~k~~~~~gi~IV 123 (471)
-.+|+|++|.++.=.+ |+.|.=+|...||.++-+- . ...||=|+..+. ..+| .|-.-|
T Consensus 325 kslF~glkFfl~reVP--resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v---------~gR~Yv 393 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP--RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV---------IGRTYV 393 (570)
T ss_pred HHHhhcceeeeeccCc--hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee---------eeeeee
Confidence 3699999999985433 5688889999999987762 1 235898887653 2222 245679
Q ss_pred cchHHHHHHHcccCCCCCccccc
Q 012081 124 TLGWFVDSVRRNVRLSESLYTVK 146 (471)
Q Consensus 124 ~p~WI~Dcik~g~~lde~~Y~l~ 146 (471)
-|+||+||+.++.+++...|.+-
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFPG 416 (570)
T ss_pred cchhhhhhccchhhccHhhhCCC
Confidence 99999999999999999999874
No 37
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.33 E-value=0.019 Score=66.24 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCEEEccccCCCCceEEEEcC-chHHHH---hcCCCceechhHHHHHHhhCCcCccCCc
Q 012081 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEE-DSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 217 ~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~-~s~~k~---l~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
..+.+.++..||.+..+ ...+||+|+.. ....++ ++.++.||+++||.+|++.|.++++..|
T Consensus 671 ~~~k~~~k~lg~s~~ss---~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~y 736 (896)
T KOG2043|consen 671 KNYKLAKKFLGGSVASS---DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPY 736 (896)
T ss_pred hhhhhHHhhccceeecc---cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccc
Confidence 44888899999999998 78999999987 333344 3688999999999999999999999887
No 38
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=94.46 E-value=0.1 Score=58.81 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dci 270 (471)
...|.|.+|.|...|+.-.|+.++++|..+||++.++ ...++++||++.. .+.|+...+++|++.+.+++-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ss--VSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTC--VTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecc--ccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 3569999999944487777999999999999999999 7999999999863 4666667899999999888744
No 39
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=94.22 E-value=0.13 Score=52.70 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=57.7
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc-----hHHHHhcCCCceechhHHHHHH
Q 012081 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-----SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 198 ~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~-----s~~k~l~~~~~IVs~~WL~dci 270 (471)
.+|.|.+|.|...++ ..|+.+.++|..+||++.++ +..++++||+++. +.+|+...+++|++.+=+++-+
T Consensus 231 ~l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~s--Vs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVS-RTHEELVERILHAGLAYSDS--VDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCc--cccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 468999999955677 57899999999999999999 7999999999862 4566667889999877666654
No 40
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=94.20 E-value=0.12 Score=52.92 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------------hHHHHh-----cCCCc
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------------SVQKYM-----GHSNN 259 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------------s~~k~l-----~~~~~ 259 (471)
...|.|.+|.|...|..-.|+.+.++|+.+||.+.++ +..++++||+++. +++++. +.+++
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~s--Vs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSS--VTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCC--cccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 3469999999954576667899999999999999999 7899999999842 244443 34888
Q ss_pred eechhHHHHHHh
Q 012081 260 LVTPVWVLKTAK 271 (471)
Q Consensus 260 IVs~~WL~dcik 271 (471)
|++.+=+++-++
T Consensus 296 ii~E~~f~~l~~ 307 (309)
T PRK06195 296 FLNEEEFLQKCK 307 (309)
T ss_pred EecHHHHHHHHh
Confidence 998665555443
No 41
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=94.20 E-value=0.063 Score=61.06 Aligned_cols=82 Identities=9% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEE------------------------EEcCc--hH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYV------------------------VCEED--SV 250 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHV------------------------Vv~~~--s~ 250 (471)
..+|.||.|.|...+.. ...++.-+..+||.|.+..+.. -.+|= ++.+. ..
T Consensus 923 kniFd~cvF~lTsa~~s--d~~~r~s~e~~gg~vle~gl~~-~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt 999 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS--DSASRPSMEKHGGLVLEKGLMN-LFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRT 999 (1176)
T ss_pred cchhcceeEEEeccccc--hhhhhhhhhccCChhhhccccc-cccccccCCcchHHhhhHHhhhccccceeEeehhhhHH
Confidence 47999999999444433 3456666777999998874222 12221 11221 23
Q ss_pred HHHh---cCCCceechhHHHHHHhhCCcCccCCc
Q 012081 251 QKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 251 ~k~l---~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
.||+ +.++.+|++.||.+|++.+++++.-+|
T Consensus 1000 ~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~Y 1033 (1176)
T KOG3548|consen 1000 HKYLEALARGIPCVHNTFIQACGEQNRCVDYTDY 1033 (1176)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHhccccccchhh
Confidence 4554 689999999999999999998885443
No 42
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=94.06 E-value=0.13 Score=57.98 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHHhh
Q 012081 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 198 ~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dcik~ 272 (471)
..|.|.+|+|...++.-.|+.+.++|..+||.+.++ .+.++++||+++. .++++...+++|++.+-+++.+.+
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGS--VSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCc--ccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 359999999944465557899999999999999999 7999999999873 456666789999999999887754
No 43
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=93.95 E-value=0.051 Score=56.62 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEccc-----------CCCCceEEEEecCC-CHHHHHHHhcCCCCCce
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFG-GRKFEHALKHGSRNGLY 121 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~-----------l~~~~THLV~~~~~-g~Ky~~A~k~~~~~gi~ 121 (471)
...+|+|.+|.++.-.+ +.-|+-+|..+||.+... .+..+||-||..+- ..|| .|..
T Consensus 347 ~~slFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv---------egrt 415 (591)
T COG5163 347 LKSLFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV---------EGRT 415 (591)
T ss_pred hhhhhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh---------ccee
Confidence 34799999999986433 336777899999997543 33467888887652 2222 2667
Q ss_pred EecchHHHHHHHcccCCCCCccccc
Q 012081 122 IVTLGWFVDSVRRNVRLSESLYTVK 146 (471)
Q Consensus 122 IV~p~WI~Dcik~g~~lde~~Y~l~ 146 (471)
-|.|+||+||+..|.+...+.|.+-
T Consensus 416 YiQPQw~fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 416 YIQPQWLFDSINKGKLACVENYCVG 440 (591)
T ss_pred eechHHHHhhhccccchhhhhcccc
Confidence 8999999999999999999999874
No 44
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=93.44 E-value=0.21 Score=56.55 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=61.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc----hHHHHhcCCCceechhHHHHHHhh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~----s~~k~l~~~~~IVs~~WL~dcik~ 272 (471)
...|.|.+|+|...+..-.|+.+.++|..+||++.++ +..++++||+++. .++++...++.|++.+-+++-+++
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~s--Vs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGS--VSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCC--cCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 4579999999944466557899999999999999999 7999999999863 355555689999999999887765
No 45
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=91.91 E-value=0.38 Score=53.73 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHH
Q 012081 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 198 ~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dci 270 (471)
..|.|.+|.|...++.-.|+..+.++...||+|..+ ...++++||++++ .+.|+...+++|.+.+++++-+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~S--VSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ll 666 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGS--VSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLALL 666 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEece--ecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHhh
Confidence 689999999965688777899999999999999999 6888888888774 4666667899999998887643
No 46
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=91.79 E-value=0.3 Score=55.07 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=53.8
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPV 264 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~ 264 (471)
...|.|.+|+|...|+.-.|+.+.++|+.+||++.++ ...++++||+++. .++++...+++|++.+
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASS--VSKKTDYVIAGEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCC--cCCCccEEEECCCCChHHHHHHHcCCcEechh
Confidence 3569999999944466667899999999999999999 7899999999873 4566666788888754
No 47
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=86.64 E-value=3.2 Score=43.67 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=65.3
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCC--CHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG--GRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~--g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
++-+|+.|.|++=...++..|.+.+...|=.|+..+++.+.-|||.... .-|-.+|... |||+|+-.=+++.++
T Consensus 293 ~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~----gipl~~d~~fl~~~~ 368 (377)
T PRK05601 293 GLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRK----GIPLLSDVAFLAAVE 368 (377)
T ss_pred ccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhc----CCCccCHHHHHHHHH
Confidence 4778999999999999999999999999999999999999999998764 3577777664 899999998888876
Q ss_pred c
Q 012081 134 R 134 (471)
Q Consensus 134 ~ 134 (471)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 48
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.93 E-value=2.6 Score=47.39 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=58.9
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------hHHHHh---cCCCceechhHHHHHH
Q 012081 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLKTA 270 (471)
Q Consensus 200 F~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------s~~k~l---~~~~~IVs~~WL~dci 270 (471)
|+-....+-.+.++.+.+.+.+.++. ++... ....+||+|..-+ ...+++ ..+..|++..|++.|+
T Consensus 475 ~~kk~~~~~s~l~p~ek~~v~~~a~~---t~~k~--~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~ 549 (684)
T KOG4362|consen 475 FKKKLVLLVSGLTPSEKQLVEKFAVD---TISKF--WIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASL 549 (684)
T ss_pred cccceeeeeccCCcchHHHHHHHHHH---HHhhc--cCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHH
Confidence 33333444378999988888888877 66655 4889999997542 234443 4889999999999999
Q ss_pred hhCCcCccCCcC
Q 012081 271 KEKHVQRLVHIS 282 (471)
Q Consensus 271 k~g~lqp~~~ys 282 (471)
+.++++++..|.
T Consensus 550 k~~~~~~eepfE 561 (684)
T KOG4362|consen 550 KLRKWVSEEPFE 561 (684)
T ss_pred HhcCCCCCCCee
Confidence 999999988764
No 49
>COG5275 BRCT domain type II [General function prediction only]
Probab=78.76 E-value=7.1 Score=38.07 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=56.3
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc----hHHHHhcCCCceechhHHHHHHh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~----s~~k~l~~~~~IVs~~WL~dcik 271 (471)
...|.|..|.|...+..-.|..-..+|..+||.|... ...+.|+||.++. .+.+.-..+++.+..+=+..-|+
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~--pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~ 230 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAV--PSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIK 230 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeecc--cccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHh
Confidence 5678999999944455577888899999999999988 7889999999874 34444467888887776665543
No 50
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=71.20 E-value=2.1 Score=47.98 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=59.1
Q ss_pred CCCCCCcEEEEeCCCC----HHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHH----hcCCCceechhHHHH
Q 012081 197 NSTLSGCSMYVDSDVS----EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY----MGHSNNLVTPVWVLK 268 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs----~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~----l~~~~~IVs~~WL~d 268 (471)
...+.||.+.| +|+- .......-......|+..+.. ....+||+|......++. ....++||.+.|++.
T Consensus 439 ~~v~~~~~~vf-Sg~~P~~~~~~~s~~~~~~~~~g~vs~~~--~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~ 515 (635)
T KOG0323|consen 439 TKVLKGSQIVF-SGLHPTGSTDESADILGVAQQLGAVSAPD--VSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWR 515 (635)
T ss_pred hHHhhccceee-cccccCcCCcchhhhhhhhhcccceeccc--ccchhhhHHhhccCcceeeccccccceeEechhHHHH
Confidence 45678888888 5532 223344455667788888877 689999999877433222 234589999999999
Q ss_pred HHhhCCcCccCCcChH
Q 012081 269 TAKEKHVQRLVHISAD 284 (471)
Q Consensus 269 cik~g~lqp~~~ys~d 284 (471)
|+.+..-..+..+..+
T Consensus 516 ~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 516 SLEKWGKVEEKLEPLD 531 (635)
T ss_pred HHHHhcchhccccccc
Confidence 9998877766655444
No 51
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=70.07 E-value=6.2 Score=45.46 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHhc-CCCceechhHHHHHHhhCCc
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMG-HSNNLVTPVWVLKTAKEKHV 275 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l~-~~~~IVs~~WL~dcik~g~l 275 (471)
...|.|..||. .|-..+..+++++.-..+||...... ..+..+|||+.+-.....-+ ..+...+++|+.+|+++|..
T Consensus 45 ~s~fs~is~~~-ngs~~e~~nelk~~~~~~t~~~~~~~-~rs~T~~ii~~~l~a~~vk~~~~~~~~~~e~iie~~~~~~~ 122 (1016)
T KOG2093|consen 45 SSSFSGISISV-NGSTDESANELKLQNMFHTGASAASY-ERSGTENIIAQGLPADLVKGFTIPKHISIEWIIECCENGMD 122 (1016)
T ss_pred cceeeeeeecc-CCccccchHHHhhhhhhccccccccc-ccccceeeecccchHHHhccccchhhhcHHHHHHHHhccCc
Confidence 57899999999 67666677888999999999988442 67888999987721111112 45667889999999999977
Q ss_pred CccC
Q 012081 276 QRLV 279 (471)
Q Consensus 276 qp~~ 279 (471)
+-..
T Consensus 123 ~~~~ 126 (1016)
T KOG2093|consen 123 VGYY 126 (1016)
T ss_pred cccc
Confidence 5543
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=45.09 E-value=6.9 Score=30.97 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=8.5
Q ss_pred EEEecCCcceeeccCcc
Q 012081 8 EVVSSKGCSRLFLGSVP 24 (471)
Q Consensus 8 ~~~~~~~~~~~~~~s~~ 24 (471)
++|..+||+|+||++|-
T Consensus 19 ~pv~l~~CeH~fCs~Ci 35 (65)
T PF14835_consen 19 EPVCLGGCEHIFCSSCI 35 (65)
T ss_dssp S-B---SSS--B-TTTG
T ss_pred CCceeccCccHHHHHHh
Confidence 46778999999999986
No 53
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=41.87 E-value=65 Score=31.18 Aligned_cols=68 Identities=15% Similarity=0.341 Sum_probs=48.2
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---------hHHHHhcCCCceechhHHHHHH
Q 012081 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---------SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 200 F~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---------s~~k~l~~~~~IVs~~WL~dci 270 (471)
|+|++-+|....+.. ++.+=..+||++++ | ..+.++.-.+. ....|+..+.+|.++.||..|.
T Consensus 1 F~~q~aWFs~SVs~~----~~~~Wv~~GG~isd-~---~~AdFLFS~DAshpDT~~iy~S~dY~~d~aTVFha~yl~a~~ 72 (212)
T PF15101_consen 1 FQGQRAWFSGSVSQD----LRQFWVKEGGTISD-W---DAADFLFSCDASHPDTARIYQSLDYIEDRATVFHASYLSAVA 72 (212)
T ss_pred CCCceeeeecCcchH----HHHHHHhcCCccCC-h---hhcceeeecCCCCcchHhhhhhhhhhhcCeeeeeHHHHHHHh
Confidence 788888885567765 45556778999998 3 23344443331 2355677899999999999999
Q ss_pred hhCCc
Q 012081 271 KEKHV 275 (471)
Q Consensus 271 k~g~l 275 (471)
++...
T Consensus 73 na~s~ 77 (212)
T PF15101_consen 73 NAESK 77 (212)
T ss_pred hhhhc
Confidence 88654
No 54
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=37.95 E-value=89 Score=23.34 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.5
Q ss_pred EEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceE
Q 012081 62 VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTH 97 (471)
Q Consensus 62 vI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~TH 97 (471)
-|+|+||+++..+.+.+-....|.....+++.....
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~~~ 38 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFASFGEIVDIYVPESTNW 38 (53)
T ss_pred EEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCCcE
Confidence 489999999999999888889999888888743333
No 55
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=37.19 E-value=19 Score=31.98 Aligned_cols=45 Identities=36% Similarity=0.692 Sum_probs=30.9
Q ss_pred ecccceEEeeccchhcccCCCcceeecC-----------CC-ccHHHHHHHHHhhhc
Q 012081 426 FKNHFLTILFPVDRFAEMGPSSRTYFSD-----------NG-FTCLQVLDYIYEFYQ 470 (471)
Q Consensus 426 ~~~~~~t~~~p~d~~~~~~~~~~~~~~~-----------~g-~~~~~~~~~~~~~y~ 470 (471)
|||.|+-+=+|.=-|+|=+|..++=+.. +| +|.+|+++++.+-|+
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~ 57 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYG 57 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhC
Confidence 7999999999999999988887773321 44 999999999998886
No 56
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=33.12 E-value=30 Score=36.65 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=46.1
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF 103 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~ 103 (471)
....+|....+..-|-++..+..+++-+-.+||.+.+.++..+||+|+...
T Consensus 118 ~Y~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 118 TYCCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred hhhcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 345789999999999999888889999999999999999999999999865
No 57
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=32.10 E-value=33 Score=36.36 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~ 247 (471)
-..|....||+ .+.++..+..+++-+...||.|..- +...+||+++..
T Consensus 120 ~~aFp~f~fY~-dn~s~~~khRvk~gf~~LGa~v~tf--F~~~VThfiTrR 167 (468)
T COG5067 120 CCAFPAFKFYK-DNKSGKRKHRVKEGFCELGAVVFTF--FEEHVTHFITRR 167 (468)
T ss_pred hcccchhhhhh-cCCCHHHHHHHHHHHHHhhhhhhee--eccceEEEEEee
Confidence 45789999999 7888888888999999999999987 699999999865
No 58
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=27.31 E-value=60 Score=32.78 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCC
Q 012081 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP 93 (471)
Q Consensus 59 ~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~ 93 (471)
..++|..|||++++++.|+++.+..+..+.+|++-
T Consensus 94 ~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 94 KPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred CCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 45889999999999999999999988888888753
Done!