Query 012081
Match_columns 471
No_of_seqs 212 out of 1342
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 21:14:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olc_X DNA topoisomerase 2-bin 100.0 1.4E-28 4.7E-33 246.9 21.2 180 54-284 102-285 (298)
2 3ii6_X DNA ligase 4; XRCC4, NH 99.9 5.5E-27 1.9E-31 231.3 16.5 218 53-282 6-262 (263)
3 1l0b_A BRCA1; TANDEM-BRCT, thr 99.9 3.1E-26 1.1E-30 219.8 16.9 192 56-282 3-211 (229)
4 2nte_A BARD-1, BRCA1-associate 99.9 2.5E-26 8.5E-31 218.4 15.5 180 60-279 2-209 (210)
5 1t15_A Breast cancer type 1 su 99.9 9.2E-26 3.1E-30 213.7 17.8 190 59-282 3-209 (214)
6 3u3z_A Microcephalin; DNA repa 99.9 1.7E-25 5.9E-30 212.0 14.6 182 60-281 11-195 (199)
7 1kzy_C Tumor suppressor P53-bi 99.9 1.9E-23 6.5E-28 205.6 16.7 191 53-281 11-249 (259)
8 1z56_C DNA ligase IV; DNA repa 99.9 1.3E-24 4.4E-29 213.5 5.3 219 54-283 2-261 (264)
9 2etx_A Mediator of DNA damage 99.9 2.9E-23 9.9E-28 197.7 12.9 187 54-281 6-199 (209)
10 3sqd_A PAX-interacting protein 99.9 4E-22 1.4E-26 191.6 15.7 185 54-275 10-211 (219)
11 3al2_A DNA topoisomerase 2-bin 99.9 2E-21 6.7E-26 188.7 17.3 203 56-281 5-226 (235)
12 2vxb_A DNA repair protein RHP9 99.8 1.4E-20 4.7E-25 183.3 17.4 196 56-277 1-240 (241)
13 3l46_A Protein ECT2; alternati 99.8 1.1E-21 3.6E-26 169.7 6.3 90 54-147 18-107 (112)
14 2cou_A ECT2 protein; BRCT doma 99.8 7.7E-21 2.6E-25 163.5 5.9 90 54-147 9-98 (109)
15 3l41_A BRCT-containing protein 99.8 1.6E-19 5.4E-24 173.7 8.9 196 57-287 5-218 (220)
16 3l3e_A DNA topoisomerase 2-bin 99.8 5.2E-19 1.8E-23 151.1 10.1 91 53-147 11-104 (107)
17 2d8m_A DNA-repair protein XRCC 99.8 1.3E-18 4.4E-23 153.8 11.3 91 54-148 19-109 (129)
18 4id3_A DNA repair protein REV1 99.7 1.9E-18 6.7E-23 142.5 8.4 87 53-145 3-91 (92)
19 2ebw_A DNA repair protein REV1 99.7 5.4E-18 1.9E-22 141.8 9.3 88 53-146 8-96 (97)
20 3olc_X DNA topoisomerase 2-bin 99.7 1.6E-16 5.6E-21 159.2 10.6 93 53-149 195-288 (298)
21 3pa6_A Microcephalin; BRCT dom 99.7 3E-16 1E-20 134.5 10.4 93 54-150 4-100 (107)
22 1wf6_A Similar to S.pombe -RAD 99.6 6E-15 2.1E-19 130.7 12.4 92 54-147 37-128 (132)
23 3pc6_A DNA repair protein XRCC 99.6 6.6E-15 2.3E-19 125.4 11.5 93 53-147 3-96 (104)
24 1wf6_A Similar to S.pombe -RAD 99.6 7.1E-15 2.4E-19 130.2 11.2 96 185-283 26-126 (132)
25 3ef1_A RNA polymerase II subun 99.6 5.8E-15 2E-19 154.5 9.3 89 54-145 349-441 (442)
26 4id3_A DNA repair protein REV1 99.5 1.1E-14 3.9E-19 119.8 8.4 83 197-282 5-90 (92)
27 3l46_A Protein ECT2; alternati 99.5 1.2E-14 4E-19 125.5 7.8 84 197-283 19-105 (112)
28 3ef0_A RNA polymerase II subun 99.5 1.5E-14 5.1E-19 149.0 9.6 88 55-145 280-371 (372)
29 2cou_A ECT2 protein; BRCT doma 99.5 1.2E-14 4E-19 124.8 6.6 85 197-284 10-97 (109)
30 2ebw_A DNA repair protein REV1 99.5 6.8E-14 2.3E-18 116.8 7.9 84 197-282 10-94 (97)
31 3pc6_A DNA repair protein XRCC 99.4 4.9E-13 1.7E-17 113.9 9.6 84 197-282 5-93 (104)
32 3l3e_A DNA topoisomerase 2-bin 99.4 5.5E-13 1.9E-17 113.6 8.1 85 197-284 13-103 (107)
33 2d8m_A DNA-repair protein XRCC 99.3 2.3E-12 7.8E-17 113.6 7.9 85 197-284 20-107 (129)
34 3pa6_A Microcephalin; BRCT dom 99.3 3.4E-12 1.1E-16 109.3 5.9 93 197-291 5-104 (107)
35 2ep8_A Pescadillo homolog 1; A 99.2 8.7E-12 3E-16 105.4 7.0 81 197-281 10-99 (100)
36 1l7b_A DNA ligase; BRCT, autos 99.2 1E-11 3.5E-16 103.4 7.2 77 54-134 4-80 (92)
37 3pc7_A DNA ligase 3; DNA repai 99.2 1.4E-11 4.7E-16 101.7 6.6 74 197-278 14-87 (88)
38 2coe_A Deoxynucleotidyltransfe 99.2 5.3E-11 1.8E-15 103.7 10.6 84 196-281 17-111 (120)
39 2k6g_A Replication factor C su 99.2 1.1E-10 3.7E-15 100.2 9.9 79 53-135 28-108 (109)
40 2ep8_A Pescadillo homolog 1; A 99.1 8.4E-11 2.9E-15 99.4 8.0 82 53-144 8-100 (100)
41 2jw5_A DNA polymerase lambda; 99.1 1.9E-11 6.3E-16 104.5 3.1 85 196-282 8-102 (106)
42 2ebu_A Replication factor C su 99.1 4.4E-10 1.5E-14 96.8 10.2 78 53-134 18-97 (112)
43 3ii6_X DNA ligase 4; XRCC4, NH 99.0 6.8E-10 2.3E-14 109.1 11.0 92 54-145 161-263 (263)
44 2cok_A Poly [ADP-ribose] polym 99.0 7.6E-10 2.6E-14 95.5 8.5 84 55-142 8-104 (113)
45 2jw5_A DNA polymerase lambda; 99.0 4.5E-10 1.5E-14 95.8 5.6 91 54-146 8-104 (106)
46 2nte_A BARD-1, BRCA1-associate 99.0 1.7E-09 5.8E-14 102.1 9.6 132 202-342 2-140 (210)
47 1z56_C DNA ligase IV; DNA repa 98.9 4.5E-10 1.5E-14 109.8 5.4 95 53-147 156-263 (264)
48 1l0b_A BRCA1; TANDEM-BRCT, thr 98.9 2.2E-09 7.4E-14 102.3 9.2 81 199-282 4-93 (229)
49 1t15_A Breast cancer type 1 su 98.9 2.1E-09 7.1E-14 101.1 8.0 80 201-283 3-91 (214)
50 3u3z_A Microcephalin; DNA repa 98.9 1E-09 3.5E-14 103.5 5.7 82 54-146 116-198 (199)
51 3pc7_A DNA ligase 3; DNA repai 98.9 3.6E-09 1.2E-13 87.1 6.8 75 53-140 12-87 (88)
52 3sqd_A PAX-interacting protein 98.9 3.8E-09 1.3E-13 101.1 7.9 139 198-342 12-157 (219)
53 3ef0_A RNA polymerase II subun 98.8 3.8E-09 1.3E-13 108.7 7.3 83 197-282 280-370 (372)
54 3al2_A DNA topoisomerase 2-bin 98.8 9.2E-09 3.2E-13 99.5 9.3 83 199-282 6-92 (235)
55 2coe_A Deoxynucleotidyltransfe 98.8 3.6E-08 1.2E-12 85.7 12.0 93 53-145 16-113 (120)
56 2dun_A POL MU, DNA polymerase 98.8 8.9E-09 3E-13 90.6 6.4 82 197-281 8-104 (133)
57 1kzy_C Tumor suppressor P53-bi 98.7 1.6E-08 5.5E-13 99.1 8.1 85 197-284 13-136 (259)
58 2vxb_A DNA repair protein RHP9 98.7 1.4E-08 4.9E-13 98.4 7.1 85 198-282 1-115 (241)
59 3ef1_A RNA polymerase II subun 98.7 1.1E-08 3.8E-13 107.0 6.3 83 197-282 350-440 (442)
60 2etx_A Mediator of DNA damage 98.6 8.2E-08 2.8E-12 90.8 8.7 88 56-148 114-204 (209)
61 2dun_A POL MU, DNA polymerase 98.5 2E-07 6.8E-12 82.0 7.3 90 53-145 6-106 (133)
62 3l41_A BRCT-containing protein 98.5 5.6E-08 1.9E-12 93.1 4.0 131 200-339 6-147 (220)
63 1l7b_A DNA ligase; BRCT, autos 98.2 2.4E-06 8.3E-11 70.9 7.5 73 197-272 5-80 (92)
64 3t7k_A RTT107, regulator of TY 98.2 9.5E-06 3.2E-10 78.4 12.1 175 59-274 21-240 (256)
65 2k6g_A Replication factor C su 98.0 1.2E-05 4.1E-10 68.7 7.9 75 197-273 30-108 (109)
66 1dgs_A DNA ligase; AMP complex 98.0 1.1E-06 3.7E-11 96.4 0.0 77 55-135 585-661 (667)
67 2cok_A Poly [ADP-ribose] polym 97.9 3.3E-05 1.1E-09 66.4 8.7 71 197-270 8-84 (113)
68 2ebu_A Replication factor C su 97.9 2.3E-05 8E-10 67.2 7.5 75 197-273 20-98 (112)
69 2owo_A DNA ligase; protein-DNA 97.9 2E-06 6.8E-11 94.4 0.0 75 55-133 595-670 (671)
70 2l42_A DNA-binding protein RAP 97.6 5E-05 1.7E-09 63.1 4.2 82 54-147 8-96 (106)
71 3huf_A DNA repair and telomere 97.5 0.00055 1.9E-08 68.4 11.7 178 58-274 113-305 (325)
72 2l42_A DNA-binding protein RAP 97.3 0.00016 5.4E-09 60.1 3.5 79 197-282 9-93 (106)
73 4gns_A Chitin biosynthesis pro 96.8 0.0055 1.9E-07 56.0 9.2 89 54-146 158-254 (290)
74 1dgs_A DNA ligase; AMP complex 94.6 0.0059 2E-07 67.0 0.0 74 197-273 585-661 (667)
75 2owo_A DNA ligase; protein-DNA 93.5 0.013 4.5E-07 64.3 0.0 73 197-271 595-670 (671)
76 3huf_A DNA repair and telomere 92.8 0.26 8.9E-06 49.2 8.1 86 201-292 114-208 (325)
77 4gns_A Chitin biosynthesis pro 91.8 0.25 8.4E-06 45.2 5.9 89 197-287 159-257 (290)
78 3t7k_A RTT107, regulator of TY 90.2 0.35 1.2E-05 46.7 5.6 73 203-282 23-117 (256)
79 3oq4_A DBF4, protein DNA52; DD 89.9 0.57 2E-05 41.0 6.2 59 72-134 31-97 (134)
80 3qbz_A DDK kinase regulatory s 89.1 0.72 2.4E-05 41.5 6.4 74 56-133 57-151 (160)
81 3oq0_A DBF4, protein DNA52; DD 87.8 2.2 7.4E-05 38.0 8.5 74 197-272 18-114 (151)
82 3oq0_A DBF4, protein DNA52; DD 87.5 1.4 4.8E-05 39.2 7.2 75 56-134 19-114 (151)
83 3qbz_A DDK kinase regulatory s 82.2 1 3.4E-05 40.5 3.7 49 197-247 56-116 (160)
84 3oq4_A DBF4, protein DNA52; DD 79.5 2.9 9.9E-05 36.5 5.6 68 202-271 7-96 (134)
85 2k2w_A Recombination and DNA r 71.3 3 0.0001 35.7 3.4 34 197-233 11-44 (118)
86 1q68_A T-cell surface glycopro 26.3 26 0.00088 23.5 1.3 21 338-358 5-35 (38)
87 2rr3_B OSBP, oxysterol-binding 23.3 42 0.0014 23.5 1.9 14 386-399 12-25 (47)
88 2klu_A T-cell surface glycopro 21.5 48 0.0016 25.4 2.1 22 335-356 34-65 (70)
No 1
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.96 E-value=1.4e-28 Score=246.87 Aligned_cols=180 Identities=21% Similarity=0.301 Sum_probs=155.9
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
...+|+|++||+||+.+++|..|.++|+.+||++..++++++||||+....+.||..|.+. +++||+++||.+|++
T Consensus 102 y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~----gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 102 YNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANL----KKPILLPSWIKTLWE 177 (298)
T ss_dssp CCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHT----TCCEECHHHHHHHHH
T ss_pred cccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHC----CCeEeeHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred cccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCCH
Q 012081 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (471)
Q Consensus 134 ~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~ 213 (471)
.++.++...|.-... . .....+|+|++|++ +|+..
T Consensus 178 ~~~~~~~~~~~~~~~----------~----------------------------------~~~~~~f~g~~i~~-tG~~~ 212 (298)
T 3olc_X 178 KSQEKKITRYTDINM----------E----------------------------------DFKCPIFLGCIICV-TGLCG 212 (298)
T ss_dssp HHHTTCCSSGGGSCG----------G----------------------------------GGBCCTTTTCEEEE-CSCCH
T ss_pred cCCcCCccccccccc----------c----------------------------------cccccccCCeEEEE-eCCCC
Confidence 998776544311000 0 01146899999999 99999
Q ss_pred HHHHHHHHHHHhCCCEEEccccCC-CCceEEEEcCchHHHH---hcCCCceechhHHHHHHhhCCcCccCCcChH
Q 012081 214 ELRNKVFEAATNEGATLVNQWFVG-CGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHISAD 284 (471)
Q Consensus 214 ~~r~~L~~lI~~~GG~v~d~~~~~-~~vTHVVv~~~s~~k~---l~~~~~IVs~~WL~dcik~g~lqp~~~ys~d 284 (471)
..|+.|+++|..+||++.++ +. .++||||+......|+ ...+++||+++||+||+++|+++++..|..+
T Consensus 213 ~~r~~l~~li~~~GG~~~~~--ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~ 285 (298)
T 3olc_X 213 LDRKEVQQLTVKHGGQYMGQ--LKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTE 285 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSS--CCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSC
T ss_pred ccHHHHHHHHHHcCCEEece--ecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCC
Confidence 99999999999999999998 56 7999999988544444 4678999999999999999999999998654
No 2
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.94 E-value=5.5e-27 Score=231.26 Aligned_cols=218 Identities=14% Similarity=0.207 Sum_probs=150.4
Q ss_pred CCCCCCCCcEEEE-eCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICV-TGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~v-TG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
..+++|+|++||| +|.....++.|+++|.+|||++..++++.+||+|+.. .+.|++.+++++ .++||+|+||.||
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~~~k~~~~~~~g---~~~IV~p~Wv~Dc 81 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-ENIRVKNIILSN---KHDVVKPAWLLEC 81 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-CCHHHHHHHHSC---SCCEECHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-CCHHHHHHHhcC---CCCEeehHHHHHH
Confidence 3568999999999 5888889999999999999999999988877778865 459999999862 5999999999999
Q ss_pred HHcccCCCCCcccccccccc-----Ccch-------------hhhhccc-CCcCCCCCCCCcccchhhccccccccc--c
Q 012081 132 VRRNVRLSESLYTVKSIDEH-----GMHL-------------DKLNRLV-GFAGTENSCLPAGIYEAKQFNATGKHE--R 190 (471)
Q Consensus 132 ik~g~~lde~~Y~l~~~~e~-----~~~~-------------~~~~~L~-~~s~~e~~~lp~~I~es~~s~s~E~ld--~ 190 (471)
+++++++|.++|.+-...+. .... ++++.|. .....+ ...|.. ....+..++ .
T Consensus 82 i~~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~-~~~~~~-----~~~~~~~l~~~~ 155 (263)
T 3ii6_X 82 FKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSN-EQTPEE-----MASLIADLEYRY 155 (263)
T ss_dssp HHHTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCC-SCCHHH-----HHHHHHHHHHHH
T ss_pred HhcCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccc-cCCchh-----hHHHHHHHHHhh
Confidence 99999999998876432210 0000 1111110 000000 000000 000000111 1
Q ss_pred ccccCCCCCCCCcEEEEeC---------CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch-----HHHH---
Q 012081 191 DSNRSMNSTLSGCSMYVDS---------DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS-----VQKY--- 253 (471)
Q Consensus 191 ~~~~~~~~lF~G~~Iyl~~---------gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s-----~~k~--- 253 (471)
.....+..+|+||+|||+. .+.....+.++.+|+.+||++++. +++.+||||+.++. ++++
T Consensus 156 ~~~~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~--l~~~vTHVVv~~~~~r~~~~~~~~~~ 233 (263)
T 3ii6_X 156 SWDCSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSC--LAEGVSHVIIGEDHSRVADFKAFRRT 233 (263)
T ss_dssp TCTTCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESS--CCTTCCEEEECSCCTTHHHHHHHHHT
T ss_pred cccCCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecC--CCCCceEEEECCCCccHHHHHHHHhh
Confidence 1112356899999999942 223334567799999999999999 68899999998631 2222
Q ss_pred hcCCCceechhHHHHHHhhCCcCccCCcC
Q 012081 254 MGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 254 l~~~~~IVs~~WL~dcik~g~lqp~~~ys 282 (471)
+..+++||+++||.+|+++|+++|+..|.
T Consensus 234 ~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~ 262 (263)
T 3ii6_X 234 FKRKFKILKESWVTDSIDKCELQEENQYL 262 (263)
T ss_dssp CSSCCEEEETHHHHHHHHTTSCCCGGGTB
T ss_pred cCCCCEEeChHHHHHHHHcCCcCCHhhCC
Confidence 24678999999999999999999998874
No 3
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.94 E-value=3.1e-26 Score=219.83 Aligned_cols=192 Identities=18% Similarity=0.233 Sum_probs=143.3
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCceEecchHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~------~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
..+++++||+||+++.++..|.++++.+||.+..+++..|||||+... .+.||..|+.. |++||+++||.
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~----g~~IV~~~Wl~ 78 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAG----GKWIVSYSWVI 78 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHT----TCEEEETHHHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHC----CCcEecHHHHH
Confidence 568899999999999999999999999999999999999999999985 57999999985 89999999999
Q ss_pred HHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeC
Q 012081 130 DSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDS 209 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~ 209 (471)
||+++|+++||++|.+......... ...|. . .......+|.|+.||+..
T Consensus 79 ~~~~~~~~~~e~~y~~~~~~~~~~~---------------~~~~~---~-------------~r~~~~~lF~g~~~~~~~ 127 (229)
T 1l0b_A 79 KSIQERKLLSVHEFEVKGDVVTGSN---------------HQGPR---R-------------SRESQEKLFEGLQIYCCE 127 (229)
T ss_dssp HHHTTTSCCCSGGGBCCEETTTCSS---------------SCHHH---H-------------HHHHC--CCTTCEEEECS
T ss_pred HHHHCCCcCChHHeEeccccccccc---------------cccch---h-------------hhhhhhhhhcCceEEEEe
Confidence 9999999999999998643211000 00000 0 000124699999999955
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEccccC---CCCceEE-EEcCch------HHHH-hcCCCceechhHHHHHHhhCCcCcc
Q 012081 210 DVSEELRNKVFEAATNEGATLVNQWFV---GCGASYV-VCEEDS------VQKY-MGHSNNLVTPVWVLKTAKEKHVQRL 278 (471)
Q Consensus 210 gfs~~~r~~L~~lI~~~GG~v~d~~~~---~~~vTHV-Vv~~~s------~~k~-l~~~~~IVs~~WL~dcik~g~lqp~ 278 (471)
.+....++.|.++|+.+||+++..... ..+.+|+ |+.+.. ++.+ ...+++||+++||+|||.+++++++
T Consensus 128 ~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~ 207 (229)
T 1l0b_A 128 PFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDL 207 (229)
T ss_dssp CCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCG
T ss_pred cCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCc
Confidence 576667889999999999999998411 1135774 444321 1212 2467999999999999999999999
Q ss_pred CCcC
Q 012081 279 VHIS 282 (471)
Q Consensus 279 ~~ys 282 (471)
..|.
T Consensus 208 ~~Y~ 211 (229)
T 1l0b_A 208 DAYL 211 (229)
T ss_dssp GGGB
T ss_pred cceE
Confidence 8883
No 4
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.94 E-value=2.5e-26 Score=218.40 Aligned_cols=180 Identities=19% Similarity=0.273 Sum_probs=144.0
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEec---CCCHHHHHHHhcCCCCCceEecchHHHHHHHccc
Q 012081 60 GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS---FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNV 136 (471)
Q Consensus 60 GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~---~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~ 136 (471)
|++||+||+.++++..|.+++..+||.+..+++..+||||+.. ..+.||..|+.. |++||+++||.||+++|+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~----g~~IV~~~Wl~~c~~~~~ 77 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILN----GCWILKFEWVKACLRRKV 77 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHT----TCEEEETHHHHHHHHHTS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhc----CCEEecHHHHHHHHHcCC
Confidence 7899999999999999999999999999999999999999987 568999999985 899999999999999999
Q ss_pred CCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCCHHHH
Q 012081 137 RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELR 216 (471)
Q Consensus 137 ~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~~~r 216 (471)
++||++|.+...... ...++ ......+|+|+.||+...+....+
T Consensus 78 ~~~e~~y~~~~~~~~----~r~~~--------------------------------~~~~~~lF~g~~~~l~~~~~~~~~ 121 (210)
T 2nte_A 78 CEQEEKYEIPEGPRR----SRLNR--------------------------------EQLLPKLFDGCYFYLWGTFKHHPK 121 (210)
T ss_dssp CCCGGGTBCTTHHHH----HHHHH--------------------------------HTTCCCTTTTCEEEECSCCSSSCH
T ss_pred cCChhhccCCCCChh----hhhcc--------------------------------ccccccccCceEEEEeccCCCCCH
Confidence 999999999732100 00000 001256999999999545777778
Q ss_pred HHHHHHHHhCCCEEEccccC---------------------CCCceEEEEcCchHH----HHhcCCCceechhHHHHHHh
Q 012081 217 NKVFEAATNEGATLVNQWFV---------------------GCGASYVVCEEDSVQ----KYMGHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 217 ~~L~~lI~~~GG~v~d~~~~---------------------~~~vTHVVv~~~s~~----k~l~~~~~IVs~~WL~dcik 271 (471)
+.|+++|+.+||+++...-. ...+||.|+..+..+ ++...++.+|+++||+|||.
T Consensus 122 ~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~~~~~~~v~~V~~~Wl~dcI~ 201 (210)
T 2nte_A 122 DNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCVM 201 (210)
T ss_dssp HHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCSCSEETTEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHHHHhccCcccccHHHHHHHHH
Confidence 99999999999999963100 135688888664321 12236678999999999999
Q ss_pred hCCcCccC
Q 012081 272 EKHVQRLV 279 (471)
Q Consensus 272 ~g~lqp~~ 279 (471)
++++||..
T Consensus 202 ~~~llp~~ 209 (210)
T 2nte_A 202 SFELLPLD 209 (210)
T ss_dssp HTSCCCSC
T ss_pred hCeeccCC
Confidence 99999974
No 5
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.94 E-value=9.2e-26 Score=213.74 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=144.7
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 59 ~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~------~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
+|++|++||+.+.++..|.++++.+||.+..+++..+||||+.+. .+.||..|+.. |++||+++||.||+
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~----g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAG----GKWVVSYFWVTQSI 78 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHT----TCEEEETHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhc----CCEEeCHHHHHHHH
Confidence 589999999999999999999999999999999999999999985 47999999985 89999999999999
Q ss_pred HcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 012081 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs 212 (471)
++|+++||++|.+.............. ... . .....+|+|+.||+...+.
T Consensus 79 ~~~~~~~e~~y~~~~~~~~~~~~~~~~------------------~~r-----------~-~~~~~lF~g~~~~~~~~~~ 128 (214)
T 1t15_A 79 KERKMLNEHDFEVRGDVVNGRNHQGPK------------------RAR-----------E-SQDRKIFRGLEICCYGPFT 128 (214)
T ss_dssp HTTSCCCGGGGBCCEETTTBTTCCHHH------------------HHH-----------T-CTTSCTTTTCEEEECSCCS
T ss_pred HCCCcCChHHeEeeccccccccccchh------------------hHh-----------h-cCCCcccCCCEEEEEecCC
Confidence 999999999999874321100000000 000 0 0125699999999955576
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCC---CceEEEEcCchH----HHH----hcCCCceechhHHHHHHhhCCcCccCCc
Q 012081 213 EELRNKVFEAATNEGATLVNQWFVGC---GASYVVCEEDSV----QKY----MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 213 ~~~r~~L~~lI~~~GG~v~d~~~~~~---~vTHVVv~~~s~----~k~----l~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
...++.|.++|+.+||+++....... ...+||+.+++. .++ ...++++|+++||+||+.+++++|+..|
T Consensus 129 ~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y 208 (214)
T 1t15_A 129 NMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTY 208 (214)
T ss_dssp SSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGG
T ss_pred CCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcce
Confidence 66688999999999999998731111 123454433211 122 2467899999999999999999999988
Q ss_pred C
Q 012081 282 S 282 (471)
Q Consensus 282 s 282 (471)
.
T Consensus 209 ~ 209 (214)
T 1t15_A 209 L 209 (214)
T ss_dssp B
T ss_pred e
Confidence 4
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.93 E-value=1.7e-25 Score=211.97 Aligned_cols=182 Identities=16% Similarity=0.212 Sum_probs=142.5
Q ss_pred CcEEEEeCCChhhHHHHHHHHHHcCC-EEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHHHcccC
Q 012081 60 GLVICVTGLSKEARKQVMEATERLGG-QYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVR 137 (471)
Q Consensus 60 GlvI~vTG~~~~er~~L~~lI~~~GG-~~~~~l~~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~~ 137 (471)
..+|++||++.++++.|.++|..+|| .+..+++..|||||+.+. .+.||..|+.. |++||+++||.+|++.|++
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~----g~~Iv~~~Wv~~~~~~g~~ 86 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIAR----GCWVLSYDWVLWSLELGHW 86 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHT----TCEEEETHHHHHHHHHTSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHC----CCcEEeHHHHHHHhhCCCC
Confidence 46899999999999999999999988 677999999999999885 68999999985 8999999999999999999
Q ss_pred CCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcE-EEEeCCCCHHHH
Q 012081 138 LSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCS-MYVDSDVSEELR 216 (471)
Q Consensus 138 lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~-Iyl~~gfs~~~r 216 (471)
+||++|.+.+...... ..++.+.. ........+|+|+. ||+ .++....+
T Consensus 87 l~e~~y~~~~~~~~~~----~~rl~r~~-------------------------~~~~~~~~LF~g~~~~~v-~~~~~~~~ 136 (199)
T 3u3z_A 87 ISEEPFELSHHFPAAP----LCRSECHL-------------------------SAGPYRGTLFADQPVMFV-SPASSPPV 136 (199)
T ss_dssp CCSGGGBCTTTCTHHH----HHHHHHHH-------------------------CSSSCCCCTTTTSCCEEE-CTTCSSCH
T ss_pred CChhhccccCCccccc----cchhhhhh-------------------------hcccccchhhCCCeEEEE-CCCCCCCH
Confidence 9999999975422110 00110000 00011257999995 666 77776677
Q ss_pred HHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHhcCCCceechhHHHHHHhhCCcCccCCc
Q 012081 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 217 ~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
+.|.++|+.+||+++... ..++++|+.... + ...++++|+++||+|||.++++||...|
T Consensus 137 ~~L~~lI~~~GG~v~~~~---~~~~iiI~~~~~-~--~~~~~~~V~p~Wi~DsI~~~~llp~~~Y 195 (199)
T 3u3z_A 137 AKLCELVHLCGGRVSQVP---RQASIVIGPYSG-K--KKATVKYLSEKWVLDSITQHKVCAPENY 195 (199)
T ss_dssp HHHHHHHHHTTCCBCSSG---GGCSEEESCCCS-C--CCTTCEEECHHHHHHHHHHTSCCCGGGG
T ss_pred HHHHHHHHHcCCEEeccC---CCCEEEEeCCch-h--ccCCCcEEChhHHHHHHHcCCcCChHhc
Confidence 999999999999999982 345555543222 1 1367889999999999999999999887
No 7
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.90 E-value=1.9e-23 Score=205.60 Aligned_cols=191 Identities=16% Similarity=0.143 Sum_probs=144.0
Q ss_pred CCCCCCCCcEEEEeCCChh-----------------------------hHHHHHHHHHHcCCEEcccCCCC------ceE
Q 012081 53 PANAPFSGLVICVTGLSKE-----------------------------ARKQVMEATERLGGQYSPDLHPQ------CTH 97 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~-----------------------------er~~L~~lI~~~GG~~~~~l~~~------~TH 97 (471)
....+|.|+.|++|+.... .|.+|+++|+.+||++..+++.. +||
T Consensus 11 ~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~ 90 (259)
T 1kzy_C 11 LNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCL 90 (259)
T ss_dssp SSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEE
T ss_pred CCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeE
Confidence 4678999999999998653 66899999999999999999854 799
Q ss_pred EEEec-CCCHHHHHHHhcCCCCCceEecchHHHHHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCccc
Q 012081 98 LVVQS-FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGI 176 (471)
Q Consensus 98 LV~~~-~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I 176 (471)
||+.. ..+.||..|+.. |++||+++||.||++.++++|+.+|.++....... .++..
T Consensus 91 LIa~~~~rt~K~l~ala~----g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~~-----~~~~~------------- 148 (259)
T 1kzy_C 91 LIADQHCRTRKYFLCLAS----GIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEE-----QRILD------------- 148 (259)
T ss_dssp EEESSCCCSHHHHHHHHH----TCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETTT-----TEEEC-------------
T ss_pred EEcCCCCCcHHHHHHHhc----CCCCccHHHHHHHHHcCCcCCHHHccCCCCccccc-----chhhh-------------
Confidence 99987 467899999886 89999999999999999999999999974211100 00000
Q ss_pred chhhccccccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccC-------CCCceEEEEcCc-
Q 012081 177 YEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFV-------GCGASYVVCEED- 248 (471)
Q Consensus 177 ~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~-------~~~vTHVVv~~~- 248 (471)
......+|+|++|||.....+..++.+..+++.+||+++..... ....+|||+.+.
T Consensus 149 ----------------~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~ 212 (259)
T 1kzy_C 149 ----------------WQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPS 212 (259)
T ss_dssp ----------------CCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTT
T ss_pred ----------------ccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCC
Confidence 00125799999999966665445677899999999998877310 113455555431
Q ss_pred --h-H-HHHhcCCCceechhHHHHHHhhCCcCccCCc
Q 012081 249 --S-V-QKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 249 --s-~-~k~l~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
+ . +.....+++||+.+||++||..|+++++...
T Consensus 213 ~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 213 CPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp CCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTTSS
T ss_pred ChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCCcC
Confidence 1 1 2223578999999999999999999998654
No 8
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-24 Score=213.52 Aligned_cols=219 Identities=12% Similarity=0.116 Sum_probs=125.1
Q ss_pred CCCCCCCcEEEE-eCCCh------hhHHHHHHHHHHcCCEEcccCCCC-----ceEEEEecCCCHHHHHHHhcCCCCCce
Q 012081 54 ANAPFSGLVICV-TGLSK------EARKQVMEATERLGGQYSPDLHPQ-----CTHLVVQSFGGRKFEHALKHGSRNGLY 121 (471)
Q Consensus 54 ~~~iF~GlvI~v-TG~~~------~er~~L~~lI~~~GG~~~~~l~~~-----~THLV~~~~~g~Ky~~A~k~~~~~gi~ 121 (471)
..++|+|++||| +|+.. ..|+.|+++|.++||++..+.... +||+|+.. .+.|++.+.++ +++
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~~~~----~~~ 76 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKALIDR----GYD 76 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGGTTT----TCC
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHHHhC----CCC
Confidence 458999999998 56532 478999999999999988765542 36777754 57788777664 699
Q ss_pred EecchHHHHHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcc---cc----hhhc--ccccccccccc
Q 012081 122 IVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAG---IY----EAKQ--FNATGKHERDS 192 (471)
Q Consensus 122 IV~p~WI~Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~---I~----es~~--s~s~E~ld~~~ 192 (471)
||+|+||.||+++++++|.++|.+-..... +.+ .+..-.+.. ..++..+.. +. .... .....+++...
T Consensus 77 vV~p~Wv~dci~~~~llp~~~y~~~~~~~~-~~~-~~~~~~d~~-gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 153 (264)
T 1z56_C 77 ILHPNWVLDCIAYKRLILIEPNYCFNVSQK-MRA-VAEKRVDCL-GDSFENDISETKLSSLYKSQLSLPPMGELEIDSEV 153 (264)
T ss_dssp CBCSSTTHHHHSSCSCCCCCSCBSCCCGGG-THH-HHGGGBCSS-SCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSC
T ss_pred EEechHHHHHhhcCCCCCCChHHhhcCCHH-HHH-HHHHhcccc-CCccccCCCHHHHHHHHHhcccccchhhhhhhccc
Confidence 999999999999999999999866422111 000 000000000 000000000 00 0000 00011112222
Q ss_pred ccCCCCCCCCcEEEEeCCC-CHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---------hHHHHhcC------
Q 012081 193 NRSMNSTLSGCSMYVDSDV-SEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---------SVQKYMGH------ 256 (471)
Q Consensus 193 ~~~~~~lF~G~~Iyl~~gf-s~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---------s~~k~l~~------ 256 (471)
...+..+|+||+||| .++ ....++.++.+|+.+||++++. ++..+||||+... .+++.+..
T Consensus 154 ~~~~~~lF~g~~~yl-~~~~~~~~~~~l~~~i~~~GG~v~~~--l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (264)
T 1z56_C 154 RRFPLFLFSNRIAYV-PRRKISTEDDIIEMKIKLFGGKITDQ--QSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASD 230 (264)
T ss_dssp CCCCCC---------------------CHHHHHHHTTSCCCC--SSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSS
T ss_pred ccCchhhhCCeEEEE-ecCCCchhHHHHHHHHHHcCCEEecc--cCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccc
Confidence 234578999999999 554 3455677899999999999998 5655566666432 13333322
Q ss_pred ---C-CceechhHHHHHHhhCCcCccCCcCh
Q 012081 257 ---S-NNLVTPVWVLKTAKEKHVQRLVHISA 283 (471)
Q Consensus 257 ---~-~~IVs~~WL~dcik~g~lqp~~~ys~ 283 (471)
+ ++||+++||.||+++|+++++..|.+
T Consensus 231 ~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 231 TIPKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp SCCCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred ccCCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 2 59999999999999999999999854
No 9
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.89 E-value=2.9e-23 Score=197.71 Aligned_cols=187 Identities=21% Similarity=0.264 Sum_probs=134.7
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
+.+...+++|++||+.+++ ++++|+.+||.+..+++ +|||||+... .+.||..|+.+ |++||+++||.+|+
T Consensus 6 ~~~~~~~~~v~~sG~~~~~---~~~~i~~lGg~~~~~~~-~~THlI~~~~~rt~K~l~a~~~----g~~IV~~~Wl~~~~ 77 (209)
T 2etx_A 6 LNQESTAPKVLFTGVVDAR---GERAVLALGGSLAGSAA-EASHLVTDRIRRTVKFLCALGR----GIPILSLDWLHQSR 77 (209)
T ss_dssp ------CCEEEECSSCCHH---HHHHHHHTTCEECSSTT-TCSEEECSSCCCSHHHHHHHHH----TCCEECTHHHHHHH
T ss_pred ccccCCCcEEEEeCCCcHH---HHHHHHHCCCEEeCCCC-CceEEEECCCCCCHHHHHHHhc----CCccccHHHHHHHH
Confidence 5577889999999999754 48999999999999997 4999999876 58999999996 89999999999999
Q ss_pred HcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 012081 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs 212 (471)
++++++||++|.+.+..... ..+++ + .+. +.. . ....+|.|++||+. +..
T Consensus 78 ~~~~~l~e~~y~~~~~~~~~--------~~~~~------l----~~~--------~~~-a--~~~~lF~g~~~~~~-~~~ 127 (209)
T 2etx_A 78 KAGFFLPPDEYVVTDPEQEK--------NFGFS------L----QDA--------LSR-A--RERRLLEGYEIYVT-PGV 127 (209)
T ss_dssp HHTSCCCSGGGBCCCHHHHH--------HTTCC------H----HHH--------HHH-H--HHSCTTTTCEEEEC-TTC
T ss_pred HcCCCCChhhccccChhhhh--------hcCCC------H----HHH--------Hhh-h--hhCCCcCCcEEEEe-CCC
Confidence 99999999999986431100 00000 0 000 000 0 01369999999994 443
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCCC--ceEEEEcCc-h---HHHHhcCCCceechhHHHHHHhhCCcCccCCc
Q 012081 213 EELRNKVFEAATNEGATLVNQWFVGCG--ASYVVCEED-S---VQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 213 ~~~r~~L~~lI~~~GG~v~d~~~~~~~--vTHVVv~~~-s---~~k~l~~~~~IVs~~WL~dcik~g~lqp~~~y 281 (471)
...++.|.++|+.+||+++.. .... -+|+|+..+ + .+.+...++++|+++||++||..+++ ++..|
T Consensus 128 ~~~~~~l~~li~~~GG~v~~~--~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~l-d~e~y 199 (209)
T 2etx_A 128 QPPPPQMGEIISCCGGTYLPS--MPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEA-KPEAF 199 (209)
T ss_dssp SSCHHHHHHHHHHTTCEECSS--CCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCC-CGGGG
T ss_pred CCCHHHHHHHHHHCCCEEECC--CCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhccc-ChHHh
Confidence 334678999999999999987 3332 267777542 2 23344678999999999999998775 55544
No 10
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.88 E-value=4e-22 Score=191.60 Aligned_cols=185 Identities=16% Similarity=0.275 Sum_probs=141.2
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
+..++.|++||+||+.+.++..+.++|+.+||.+..+. .+|||||+... .+.||..|+.+ |++||+++||.+|+
T Consensus 10 ~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~----g~~IVs~~Wl~~c~ 84 (219)
T 3sqd_A 10 KLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISV----VKHIVTPEWLEECF 84 (219)
T ss_dssp CCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTT----CSEEECHHHHHHHH
T ss_pred ccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHc----CCCEecHHHHHHHH
Confidence 45789999999999999999999999999999999886 88999999876 45799999986 89999999999999
Q ss_pred HcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 012081 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs 212 (471)
++|+++||++|.+.+..... ..++. +...+.. . ....+|.|+.|||.+++.
T Consensus 85 ~~~~~l~e~~y~l~d~~~e~--------~~~~~------l~~~l~r-------------a--~~~~LF~G~~f~it~~~~ 135 (219)
T 3sqd_A 85 RCQKFIDEQNYILRDAEAEV--------LFSFS------LEESLKR-------------A--HVSPLFKAKYFYITPGIC 135 (219)
T ss_dssp HHTSCCCSGGGBCCCHHHHH--------HTTCC------HHHHHHH-------------H--HHSCTTTTEEEEECTTCS
T ss_pred HcCCCCChHhccCCCchhhh--------hcCCC------hHHHhhh-------------h--ccccccCCcEEEEeCCCC
Confidence 99999999999997532100 00000 0000000 0 014699999999966665
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCC-----------C-ceEEEEcCc-h---HHHHhcCCCceechhHHHHHHhhCCc
Q 012081 213 EELRNKVFEAATNEGATLVNQWFVGC-----------G-ASYVVCEED-S---VQKYMGHSNNLVTPVWVLKTAKEKHV 275 (471)
Q Consensus 213 ~~~r~~L~~lI~~~GG~v~d~~~~~~-----------~-vTHVVv~~~-s---~~k~l~~~~~IVs~~WL~dcik~g~l 275 (471)
+. ++.|+++|+.+||+++... .. . ...||+..+ + .+.+...++.|++.+||++||-.+++
T Consensus 136 ~~-~~~l~~lI~~~GG~v~~~~--p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~l 211 (219)
T 3sqd_A 136 PS-LSTMKAIVECAGGKVLSKQ--PSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTL 211 (219)
T ss_dssp SC-HHHHHHHHHHTTCEEESSC--CCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHHCCCEEECCC--CchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheee
Confidence 54 7899999999999999873 21 1 234454442 2 34555689999999999999998765
No 11
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.87 E-value=2e-21 Score=188.68 Aligned_cols=203 Identities=13% Similarity=0.176 Sum_probs=143.8
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcc--cCCCCceEEEEecCC-CHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSP--DLHPQCTHLVVQSFG-GRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~--~l~~~~THLV~~~~~-g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
+.-++.+|++||++++++..+.++|+.+||.+.. +++.+|||||+.... +.||..|+.. |+|||+++||.+|+
T Consensus 5 ~~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~----G~wIvs~~wl~~s~ 80 (235)
T 3al2_A 5 SLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAA----GKWVLHRSYLEACR 80 (235)
T ss_dssp ---CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHT----TCEEECTHHHHHHH
T ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHc----CCcCccHHHHHHHH
Confidence 3447899999999999999999999999999976 578999999999874 8999999995 89999999999999
Q ss_pred HcccCCCCCcccccccccc----CcchhhhhcccCCcCCCCCCCCcccchhhcccccccccccc-ccCCCCCCCCcEEEE
Q 012081 133 RRNVRLSESLYTVKSIDEH----GMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDS-NRSMNSTLSGCSMYV 207 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~----~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~-~~~~~~lF~G~~Iyl 207 (471)
++|+++||++|++.+.... ...... ..+... |... .+.++... ......+|.|++|||
T Consensus 81 ~~g~~l~E~~ye~~~~~~~d~~~~~~~~~-~~l~~a--------~~r~--------R~~l~~~~~~g~~~~lF~g~~v~l 143 (235)
T 3al2_A 81 TAGHFVQEEDYEWGSSSILDVLTGINVQQ-RRLALA--------AMRW--------RKKIQQRQESGIVEGAFSGWKVIL 143 (235)
T ss_dssp HHTSCCCSGGGBTTSHHHHTTCTTSCHHH-HHHHHH--------HHHH--------HHHHHHHHTTTCCSSTTTTCEEEE
T ss_pred HcCCCCChhceeecCcchhccccCCChhh-hHHHHH--------HHHH--------HHHHHhcccccccCCCCCCcEEEE
Confidence 9999999999999754211 000000 000000 0000 00000000 000146999999999
Q ss_pred eCCCCHHHHHHHHHHHHhCCCEEEcccc--CCCCceEEEEcCc---------hHHHHhcCCCceechhHHHHHHhhCCcC
Q 012081 208 DSDVSEELRNKVFEAATNEGATLVNQWF--VGCGASYVVCEED---------SVQKYMGHSNNLVTPVWVLKTAKEKHVQ 276 (471)
Q Consensus 208 ~~gfs~~~r~~L~~lI~~~GG~v~d~~~--~~~~vTHVVv~~~---------s~~k~l~~~~~IVs~~WL~dcik~g~lq 276 (471)
..+ ....+.++++|+++||+|....- ...+.||+++.-. .+..+...+++||+++||+|++..+.+.
T Consensus 144 ~~~--~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~ 221 (235)
T 3al2_A 144 HVD--QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPP 221 (235)
T ss_dssp ECC--HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCC
T ss_pred ecC--CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCC
Confidence 543 45668899999999999987620 1134689887541 1333345789999999999999998877
Q ss_pred ccCCc
Q 012081 277 RLVHI 281 (471)
Q Consensus 277 p~~~y 281 (471)
+...|
T Consensus 222 ~~~~y 226 (235)
T 3al2_A 222 HVENY 226 (235)
T ss_dssp CHHHH
T ss_pred Chhhe
Confidence 76555
No 12
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.85 E-value=1.4e-20 Score=183.34 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=137.6
Q ss_pred CCCCCcEEEEeCC---ChhhHHHHHHHHHHcCCEEccc-----CC--C-------------------CceEEEEecCC-C
Q 012081 56 APFSGLVICVTGL---SKEARKQVMEATERLGGQYSPD-----LH--P-------------------QCTHLVVQSFG-G 105 (471)
Q Consensus 56 ~iF~GlvI~vTG~---~~~er~~L~~lI~~~GG~~~~~-----l~--~-------------------~~THLV~~~~~-g 105 (471)
.+|+|+.||++|. .+..+.+|+++|+++||++..+ ++ . ..||||+.... +
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3799999999998 4578999999999999999886 22 1 24999999764 7
Q ss_pred HHHHHHHhcCCCCCceEecchHHHHHHHcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccc
Q 012081 106 RKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNAT 185 (471)
Q Consensus 106 ~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~ 185 (471)
.||.+|+++ |++||+++||.||++.++++|+.+|.++........ ....+.. .+ .+.. .
T Consensus 81 ~K~~~ala~----gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~-~~~~~~~-----~~--~~~~--~------- 139 (241)
T 2vxb_A 81 VKYLEALAF----NIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLD-CTLSQRI-----EP--FDTT--D------- 139 (241)
T ss_dssp HHHHHHHHH----TCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTT-EEEECCC-----CC--CCTT--S-------
T ss_pred HHHHHHHHc----CCCEecHHHHHHHHHcCCcCChhhccCCCCcchhcc-chhhccc-----cC--CChh--h-------
Confidence 899999987 899999999999999999999999999743221100 0000000 00 0000 0
Q ss_pred cccccccccCCCCCCCCcEEEEeCCCCH------------HHHHHHHHHHHhCCCEE--EccccCCCCceEEEEcCchHH
Q 012081 186 GKHERDSNRSMNSTLSGCSMYVDSDVSE------------ELRNKVFEAATNEGATL--VNQWFVGCGASYVVCEEDSVQ 251 (471)
Q Consensus 186 E~ld~~~~~~~~~lF~G~~Iyl~~gfs~------------~~r~~L~~lI~~~GG~v--~d~~~~~~~vTHVVv~~~s~~ 251 (471)
.+ .......+.+|.|++|||-.+... +..+.+..++..+||++ +.. .....+|+|+.+...
T Consensus 140 -~l-~~~~~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~--~~~~~~d~v~~~~~~- 214 (241)
T 2vxb_A 140 -SL-YDRLLARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPN--VAHLECDLILTMDGN- 214 (241)
T ss_dssp -CH-HHHHHHCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSC--CSSCCCSEEECSSSC-
T ss_pred -HH-HHHHhhcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccc--cccCCccEEEECCcc-
Confidence 00 000012367999999999333221 13478999999999999 444 344567777765322
Q ss_pred HHhcCCCceechhHHHHHHhhCCcCc
Q 012081 252 KYMGHSNNLVTPVWVLKTAKEKHVQR 277 (471)
Q Consensus 252 k~l~~~~~IVs~~WL~dcik~g~lqp 277 (471)
.....+++||+++||.+|+..|++++
T Consensus 215 ~~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 215 IVDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp CCSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred ccccCCCCEecHHHHHHHHHhceecC
Confidence 12357899999999999999999875
No 13
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.84 E-value=1.1e-21 Score=169.73 Aligned_cols=90 Identities=30% Similarity=0.541 Sum_probs=86.3
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
+.++|.|++||++||++++|..|+++|+.+||+|...++++|||||+....+.||+.|.+| +|+||+++||.||++
T Consensus 18 ~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~----~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 18 GVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSK----KLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCS----SCEEEEHHHHHHHHH
T ss_pred CCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHC----CeeEecHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred cccCCCCCcccccc
Q 012081 134 RNVRLSESLYTVKS 147 (471)
Q Consensus 134 ~g~~lde~~Y~l~~ 147 (471)
.|.++||+.|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999964
No 14
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=7.7e-21 Score=163.47 Aligned_cols=90 Identities=28% Similarity=0.538 Sum_probs=86.2
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
..++|+|++||++||+..+|..|.++|+.|||+|...++++|||||+....+.||++|.+| +++||+++||.||++
T Consensus 9 ~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~----~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 9 KVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSK----KLFVVKQEWFWGSIQ 84 (109)
T ss_dssp CCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCT----TSEEECHHHHHHHHH
T ss_pred cCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHC----CCeEecHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred cccCCCCCcccccc
Q 012081 134 RNVRLSESLYTVKS 147 (471)
Q Consensus 134 ~g~~lde~~Y~l~~ 147 (471)
+|+++||.+|.+..
T Consensus 85 ~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 85 MDARAGETMYLYEK 98 (109)
T ss_dssp TTSCCCGGGTBCCC
T ss_pred cCCcCChhccCCCC
Confidence 99999999999864
No 15
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.78 E-value=1.6e-19 Score=173.69 Aligned_cols=196 Identities=17% Similarity=0.294 Sum_probs=138.0
Q ss_pred CCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHHHcc
Q 012081 57 PFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRN 135 (471)
Q Consensus 57 iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~g 135 (471)
.-+++.|++||+.+.+ +.++|+.+||.+..+++ +|||||+... .+.||..|+.+ |+|||+++||.+|++.|
T Consensus 5 ~~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~----g~~IVs~~Wl~~~~~~~ 76 (220)
T 3l41_A 5 ASKRVYITFTGYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPY----GPCVVTMDWINSCLKTH 76 (220)
T ss_dssp --CCEEEEECSCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGG----CCEEECHHHHHHHHHHT
T ss_pred ccceEEEEEeccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCC----CCeEEEhHHHHhhhhhh
Confidence 4467899999999865 38999999999999885 6999999876 58999999996 79999999999999999
Q ss_pred cCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC-HH
Q 012081 136 VRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS-EE 214 (471)
Q Consensus 136 ~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs-~~ 214 (471)
+++||++|.+.+..... ..+++ +...+.. .......+|+|+.|||.+.+. ..
T Consensus 77 ~~l~e~~y~l~d~~~e~--------~~~~~------l~~~~~r-------------ar~~~~~LF~G~~f~it~~~~~~p 129 (220)
T 3l41_A 77 EIVDEEPYLLNDPEKEL--------ELGCT------LESALKR-------------ARAQGPSLLEDYVVYLTSKTVAPE 129 (220)
T ss_dssp SCCCSGGGBCCCHHHHH--------HHTSC------HHHHHHH-------------HHHHCSCTTTTSEEEEETTSSCGG
T ss_pred hccccCccccCCcHHHh--------hcccc------HHHHHHH-------------HHhcCchhhhheeEEEeccccCCC
Confidence 99999999997532100 00000 0000000 000125799999999976661 33
Q ss_pred HHHHHHHHHHhCCCEEEccc-cC-------CCCceEEEEcCchHH---HH---h--cCCCceechhHHHHHHhhCCcCcc
Q 012081 215 LRNKVFEAATNEGATLVNQW-FV-------GCGASYVVCEEDSVQ---KY---M--GHSNNLVTPVWVLKTAKEKHVQRL 278 (471)
Q Consensus 215 ~r~~L~~lI~~~GG~v~d~~-~~-------~~~vTHVVv~~~s~~---k~---l--~~~~~IVs~~WL~dcik~g~lqp~ 278 (471)
.++.|+++|+.+||+++..- +. ..+-.+||..+++.. ++ . ...++||+.+||+++|-.+++--.
T Consensus 130 ~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~ 209 (220)
T 3l41_A 130 NVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVN 209 (220)
T ss_dssp GHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTT
T ss_pred CCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcCcc
Confidence 47889999999999999810 00 011135554433322 11 1 134569999999999999888777
Q ss_pred CCcChHHHh
Q 012081 279 VHISADLAR 287 (471)
Q Consensus 279 ~~ys~dl~r 287 (471)
.++++..+|
T Consensus 210 ~~~~~~~~~ 218 (220)
T 3l41_A 210 DRIADEFAR 218 (220)
T ss_dssp CCBCGGGSC
T ss_pred hHHHHHHhh
Confidence 777766554
No 16
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.78 E-value=5.2e-19 Score=151.09 Aligned_cols=91 Identities=24% Similarity=0.460 Sum_probs=82.4
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEec---CCCHHHHHHHhcCCCCCceEecchHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS---FGGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~---~~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
...++|.|++||++|+.+.+|..|+++|+.+||++..+++++|||||+.. ..+.||+.|.++ |++||+++||.
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~----gi~IV~~~Wl~ 86 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKER----GVHIVSEHWLL 86 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHT----TCEEECHHHHH
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHC----CCeEecHHHHH
Confidence 45689999999999999999999999999999999999999999999943 457999999996 89999999999
Q ss_pred HHHHcccCCCCCcccccc
Q 012081 130 DSVRRNVRLSESLYTVKS 147 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l~~ 147 (471)
||+++|+++||++|.+..
T Consensus 87 ~c~~~~~~l~e~~Y~~~~ 104 (107)
T 3l3e_A 87 DCAQECKHLPESLYPHTY 104 (107)
T ss_dssp HHHHHTSCCCGGGCCTTC
T ss_pred HHHHhCCCCchhhCCCCC
Confidence 999999999999998753
No 17
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=153.77 Aligned_cols=91 Identities=25% Similarity=0.438 Sum_probs=86.4
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
...+|.|++||+||+...+|..|+++|+.|||+|..++++.||||||....+.||+.|.++ +|+||+++||.||++
T Consensus 19 ~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~----gi~IV~~~Wl~d~~~ 94 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL----GGRIVRKEWVLDCHR 94 (129)
T ss_dssp HTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHH----TCEEEETHHHHHHHH
T ss_pred ccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHC----CCcEecHHHHHHHHH
Confidence 4578999999999999989999999999999999999999999999999999999999997 899999999999999
Q ss_pred cccCCCCCccccccc
Q 012081 134 RNVRLSESLYTVKSI 148 (471)
Q Consensus 134 ~g~~lde~~Y~l~~~ 148 (471)
.++++||.+|.+...
T Consensus 95 ~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 95 MRRRLPSQRYLMAGP 109 (129)
T ss_dssp TTSCCCGGGGBCSSS
T ss_pred hCCcCChHhcccCCC
Confidence 999999999998753
No 18
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.9e-18 Score=142.52 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=77.5
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCC--CCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH--PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~--~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~D 130 (471)
+.+++|+|++||++|+....+..|+++|+.+||++..+++ +.+||||+....+.|+..+ .+++||+|+||.|
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~------~~~~iV~~~Wi~d 76 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF------ANYKVVSPDWIVD 76 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT------TTSCEECTHHHHH
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc------CCCCEEcccHHHH
Confidence 5778999999999998877899999999999999999999 7999999999888875443 3799999999999
Q ss_pred HHHcccCCCCCcccc
Q 012081 131 SVRRNVRLSESLYTV 145 (471)
Q Consensus 131 cik~g~~lde~~Y~l 145 (471)
|+++|+++||++|.+
T Consensus 77 ci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 77 SVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHTSCCCGGGGBC
T ss_pred HHHcCCcCChhhccc
Confidence 999999999999986
No 19
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=141.84 Aligned_cols=88 Identities=23% Similarity=0.398 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCC-CCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~-~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
...++|+|++||++|+...++..|+++|+.|||+|..+++ ..+||||+....+.|++.+. +++||+|+||.||
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~------~~~iV~p~Wl~dc 81 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK------GEKVIRPEWIVES 81 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS------SSCCBCTHHHHHH
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc------CCCEeChHHHHHH
Confidence 5678999999999999888899999999999999999887 58999999998889987753 6999999999999
Q ss_pred HHcccCCCCCccccc
Q 012081 132 VRRNVRLSESLYTVK 146 (471)
Q Consensus 132 ik~g~~lde~~Y~l~ 146 (471)
+++|+++|+++|.+.
T Consensus 82 i~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 82 IKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHTSCCCSGGGBSC
T ss_pred HHcCCccCchHcEec
Confidence 999999999999873
No 20
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.66 E-value=1.6e-16 Score=159.16 Aligned_cols=93 Identities=39% Similarity=0.617 Sum_probs=86.9
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCC-CCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~-~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
...++|+|++||+||+.+.+|..|+++|+.+||+|+.+++ +.|||||+....+.||+.|.+| ||+||+++||.||
T Consensus 195 ~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~----gi~IV~~~Wl~ds 270 (298)
T 3olc_X 195 FKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRW----NVHCVTTQWFFDS 270 (298)
T ss_dssp GBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHT----TCEEECHHHHHHH
T ss_pred ccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHC----CCeEEeHHHHHHH
Confidence 4568999999999999999999999999999999999999 7999999999999999999997 7999999999999
Q ss_pred HHcccCCCCCcccccccc
Q 012081 132 VRRNVRLSESLYTVKSID 149 (471)
Q Consensus 132 ik~g~~lde~~Y~l~~~~ 149 (471)
+++|+++||++|.+....
T Consensus 271 i~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 271 IEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHTSCCCGGGSBSCC--
T ss_pred HHCCCCCCchhcCCCCCc
Confidence 999999999999997543
No 21
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.66 E-value=3e-16 Score=134.50 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=83.4
Q ss_pred CCCCCCCcEEEEeCCCh----hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHH
Q 012081 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~----~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
-.++|+|++++|..+.. ...+.+..++..+||++...+++.+||||+.+..+.||+.|.+| +++||+++||.
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~----~i~iV~~~Wv~ 79 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKR----GVKLVSVLWVE 79 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHH----TCEEECHHHHH
T ss_pred cccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcC----CCEEECHHHHH
Confidence 35799999999988763 23578999999999999999999999999999888999999998 79999999999
Q ss_pred HHHHcccCCCCCccccccccc
Q 012081 130 DSVRRNVRLSESLYTVKSIDE 150 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l~~~~e 150 (471)
||+++|+++||.+|.+....+
T Consensus 80 ~C~~~~~~vdE~~Y~i~~~~~ 100 (107)
T 3pa6_A 80 KCRTAGAHIDESLFPAANMNE 100 (107)
T ss_dssp HHHHHTSCCCGGGSBCCCTTT
T ss_pred HHHHhCccCChhcccCCCCcc
Confidence 999999999999999875543
No 22
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.60 E-value=6e-15 Score=130.68 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
+..+|+|++|+++|+....+..|+++|..+||++...++..+||||+.+.. .+++.+.+. ...+++||+++||.||++
T Consensus 37 ~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~-~~~~~~~~~-~~~~~~iV~~~Wv~dsi~ 114 (132)
T 1wf6_A 37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD-DELKQFWNK-SAHRPHVVGAKWLLECFS 114 (132)
T ss_dssp CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC-SHHHHHHHH-SCCCCCEEEHHHHHHHHH
T ss_pred cccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch-HHHHHHHHh-hCCCCeEechHHHHHHHH
Confidence 458999999999999999999999999999999999999999999998653 344444321 013789999999999999
Q ss_pred cccCCCCCcccccc
Q 012081 134 RNVRLSESLYTVKS 147 (471)
Q Consensus 134 ~g~~lde~~Y~l~~ 147 (471)
+|+++||.+|.+..
T Consensus 115 ~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 115 KGYMLSEEPYIHSG 128 (132)
T ss_dssp HSSCCCSGGGBCCC
T ss_pred cCCcCCHhhccCCC
Confidence 99999999998764
No 23
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.59 E-value=6.6e-15 Score=125.44 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=85.5
Q ss_pred CCCCCCCCcEEEEeCCC-hhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~-~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
..+.+|.|++|+++|.. ..+|..|+++|..+||.+...++.++||+|+....+.|++.|++. ..++.+|+|+||.+|
T Consensus 3 ~Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~--~p~~~~V~P~WI~~C 80 (104)
T 3pc6_A 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALME--NPSLAFVRPRWIYSC 80 (104)
T ss_dssp CCCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTT--CTTCEEECHHHHHHH
T ss_pred CcchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhh--CCCCeEEccHHHHHH
Confidence 46789999999999988 589999999999999999999999999999999999999988764 368999999999999
Q ss_pred HHcccCCCCCcccccc
Q 012081 132 VRRNVRLSESLYTVKS 147 (471)
Q Consensus 132 ik~g~~lde~~Y~l~~ 147 (471)
+++++++++++|.+..
T Consensus 81 i~~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 81 NEKQKLLPHQLYGVVP 96 (104)
T ss_dssp HHHTSCCCGGGGBCCC
T ss_pred HhcCccCCcccceecc
Confidence 9999999999999863
No 24
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.58 E-value=7.1e-15 Score=130.21 Aligned_cols=96 Identities=16% Similarity=0.281 Sum_probs=81.0
Q ss_pred ccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcC--chHHHHh---cCCCc
Q 012081 185 TGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE--DSVQKYM---GHSNN 259 (471)
Q Consensus 185 ~E~ld~~~~~~~~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~--~s~~k~l---~~~~~ 259 (471)
++++|......+..+|+||+||| .|+....+..|.++|+.+||++++. ++..+||||+.+ .++++++ ..+++
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i-~G~~~~~~~~L~~~i~~~Gg~v~~~--l~~~vTHvI~~~~~~~~~~~~~~~~~~~~ 102 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYL-CGFSGRKLDKLRRLINSGGGVRFNQ--LNEDVTHVIVGDYDDELKQFWNKSAHRPH 102 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEE-ESCCSHHHHHHHHHHHHTTCEEESS--CCSSCCEEEESSCCSHHHHHHHHSCCCCC
T ss_pred hhhcCcccccccccccCCEEEEE-ECCChHHHHHHHHHHHHCCCEEeCc--CCCCCeEEEECCchHHHHHHHHhhCCCCe
Confidence 34555555555678999999999 7999899999999999999999998 689999999976 3455555 35789
Q ss_pred eechhHHHHHHhhCCcCccCCcCh
Q 012081 260 LVTPVWVLKTAKEKHVQRLVHISA 283 (471)
Q Consensus 260 IVs~~WL~dcik~g~lqp~~~ys~ 283 (471)
||+++||+||+++|+++|+..|.+
T Consensus 103 iV~~~Wv~dsi~~~~ll~e~~Y~~ 126 (132)
T 1wf6_A 103 VVGAKWLLECFSKGYMLSEEPYIH 126 (132)
T ss_dssp EEEHHHHHHHHHHSSCCCSGGGBC
T ss_pred EechHHHHHHHHcCCcCCHhhccC
Confidence 999999999999999999999853
No 25
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.55 E-value=5.8e-15 Score=154.46 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=83.1
Q ss_pred CCCCCCCcEEEEeCCChh----hHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHH
Q 012081 54 ANAPFSGLVICVTGLSKE----ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~----er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~ 129 (471)
..++|.|++||+||+.+. +|..|.++|+.+||++...+++.||||||....+.||+.|.+++ +|+||+++||.
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g---~IkIVs~~WL~ 425 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMG---NIKVVKLNWLT 425 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHS---SSEEEEHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcC---CCEEEeHHHHH
Confidence 457999999999998752 67899999999999999999999999999999999999999983 79999999999
Q ss_pred HHHHcccCCCCCcccc
Q 012081 130 DSVRRNVRLSESLYTV 145 (471)
Q Consensus 130 Dcik~g~~lde~~Y~l 145 (471)
+|++.|+++||.+|.+
T Consensus 426 dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 426 ESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHTSCCCGGGTBC
T ss_pred HHHHcCCcCChhcccc
Confidence 9999999999999986
No 26
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.1e-14 Score=119.76 Aligned_cols=83 Identities=16% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCC--CCceEEEEcCchHHHHh-cCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVG--CGASYVVCEEDSVQKYM-GHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~--~~vTHVVv~~~s~~k~l-~~~~~IVs~~WL~dcik~g 273 (471)
..+|+||+||| .|++...+..|+++|+.+||++... +. .++||||+......|+. ..+++||+++||+||+++|
T Consensus 5 ~~~f~g~~~~i-~g~~~~~~~~l~~~i~~~GG~~~~~--~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 5 SKIFKNCVIYI-NGYTKPGRLQLHEMIVLHGGKFLHY--LSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp -CTTTTCEEEE-CSCCSSCHHHHHHHHHHTTCEEESS--CCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHHHT
T ss_pred ccccCCEEEEE-eCCCCcCHHHHHHHHHHCCCEEEEE--ecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHHcC
Confidence 57999999999 8876667889999999999999998 56 79999999886554543 3689999999999999999
Q ss_pred CcCccCCcC
Q 012081 274 HVQRLVHIS 282 (471)
Q Consensus 274 ~lqp~~~ys 282 (471)
+++|+..|.
T Consensus 82 ~~l~e~~Y~ 90 (92)
T 4id3_A 82 RLLPWQNYS 90 (92)
T ss_dssp SCCCGGGGB
T ss_pred CcCChhhcc
Confidence 999998884
No 27
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=125.54 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHh---cCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l---~~~~~IVs~~WL~dcik~g 273 (471)
...|.||+||+ +||+..+++.|+++|+.+||++... ++.+|||||+...+.+||. .++++||+++||+||++.|
T Consensus 19 ~p~F~g~~Ic~-sGf~~~er~~l~~~i~~~GG~~~~~--l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~g 95 (112)
T 3l46_A 19 VPPFQDCILSF-LGFSDEEKTNMEEMTEMQGGKYLPL--GDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMD 95 (112)
T ss_dssp CCTTTTCEECE-ESCCHHHHHHHHHHHHHTTCEECCT--TCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHHT
T ss_pred CCccCCeEEEE-eCCCHHHHHHHHHHHHHcCCEECcc--cCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHcC
Confidence 46899999999 9999999999999999999999998 6999999999986655553 5899999999999999999
Q ss_pred CcCccCCcCh
Q 012081 274 HVQRLVHISA 283 (471)
Q Consensus 274 ~lqp~~~ys~ 283 (471)
..+++..|..
T Consensus 96 ~~ldE~~Y~~ 105 (112)
T 3l46_A 96 ARAGETMYLY 105 (112)
T ss_dssp SCCCGGGSBC
T ss_pred CccChhhcee
Confidence 9999998854
No 28
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.53 E-value=1.5e-14 Score=149.01 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEeCCCh----hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHH
Q 012081 55 NAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~----~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~D 130 (471)
.++|+|++||+||+.+ .++..+.++|+.+||++..++++.||||||....+.||+.|.++ .+|+||+++||.+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~---~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSM---GNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHS---SSCCEEEHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhc---CCCEEEcHHHHHH
Confidence 4799999999999874 35789999999999999999999999999999999999999997 3799999999999
Q ss_pred HHHcccCCCCCcccc
Q 012081 131 SVRRNVRLSESLYTV 145 (471)
Q Consensus 131 cik~g~~lde~~Y~l 145 (471)
|++.|+++||.+|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999986
No 29
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=1.2e-14 Score=124.80 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHH---hcCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~---l~~~~~IVs~~WL~dcik~g 273 (471)
..+|.||+||+ +||+..+++.|.++|+.+||++... +..++||||+......+| ..++++||+++||+||++.|
T Consensus 10 ~~~F~g~~i~~-sg~~~~~r~~l~~~i~~~GG~~~~~--~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g 86 (109)
T 2cou_A 10 VPPFQDCILSF-LGFSDEEKHSMEEMTEMQGGSYLPV--GDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMD 86 (109)
T ss_dssp CCTTTTCBEEE-ESSCHHHHHHHHHHHHHHTCBCCCT--TCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTT
T ss_pred CCcCCCeEEEe-cCCCHHHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcC
Confidence 56899999999 9999999999999999999999987 799999999987654444 35889999999999999999
Q ss_pred CcCccCCcChH
Q 012081 274 HVQRLVHISAD 284 (471)
Q Consensus 274 ~lqp~~~ys~d 284 (471)
+++++..|...
T Consensus 87 ~~ldE~~Y~~~ 97 (109)
T 2cou_A 87 ARAGETMYLYE 97 (109)
T ss_dssp SCCCGGGTBCC
T ss_pred CcCChhccCCC
Confidence 99999998543
No 30
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.47 E-value=6.8e-14 Score=116.80 Aligned_cols=84 Identities=11% Similarity=0.255 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHh-cCCCceechhHHHHHHhhCCc
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM-GHSNNLVTPVWVLKTAKEKHV 275 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l-~~~~~IVs~~WL~dcik~g~l 275 (471)
..+|+|+.||+ .|+....+..|+++|+.+||++...+ ....+||||+......|+. ..+++||+++||+||+++|++
T Consensus 10 ~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~-~~~~~THlI~~~~~~~k~~~~~~~~iV~p~Wl~dci~~~~~ 87 (97)
T 2ebw_A 10 STIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYY-SRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRL 87 (97)
T ss_dssp CCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSC-CSSSCCEEECSCCCTTHHHHTSSSCCBCTHHHHHHHHHTSC
T ss_pred CCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeec-CCCCCEEEEecCCChHHHHHhcCCCEeChHHHHHHHHcCCc
Confidence 57999999999 88877778999999999999988762 2368999999885433332 138999999999999999999
Q ss_pred CccCCcC
Q 012081 276 QRLVHIS 282 (471)
Q Consensus 276 qp~~~ys 282 (471)
+|+.+|.
T Consensus 88 l~~~~Y~ 94 (97)
T 2ebw_A 88 LSYIPYQ 94 (97)
T ss_dssp CCSGGGB
T ss_pred cCchHcE
Confidence 9998874
No 31
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.42 E-value=4.9e-13 Score=113.85 Aligned_cols=84 Identities=11% Similarity=0.241 Sum_probs=70.7
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhc--CCCceechhHHHHHHh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMG--HSNNLVTPVWVLKTAK 271 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~--~~~~IVs~~WL~dcik 271 (471)
+.+|.|++|||+..++..+++.|.++|.++||.+.+. ++.++||||+..+ +++..+. .+..+|+|+||++|++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~--~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~ 82 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDY--MNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNE 82 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSS--CCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcc--cCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHh
Confidence 5799999999954554678999999999999998887 6899999999874 4444443 5688999999999999
Q ss_pred hCCcCccCCcC
Q 012081 272 EKHVQRLVHIS 282 (471)
Q Consensus 272 ~g~lqp~~~ys 282 (471)
+++++|+..|-
T Consensus 83 ~~klvp~~~y~ 93 (104)
T 3pc6_A 83 KQKLLPHQLYG 93 (104)
T ss_dssp HTSCCCGGGGB
T ss_pred cCccCCcccce
Confidence 99999998773
No 32
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.39 E-value=5.5e-13 Score=113.58 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------hHHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------s~~k~l~~~~~IVs~~WL~dci 270 (471)
..+|.||+|+| .|+.+..+..|.++|..+||++..+ ++.++||||+.+. .+++....+++||+++||.||+
T Consensus 13 ~~~l~g~~i~i-sg~~~~~r~~l~~li~~~Gg~v~~~--~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~ 89 (107)
T 3l3e_A 13 PKPLHKVVVCV-SKKLSKKQSELNGIAASLGADYRRS--FDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCA 89 (107)
T ss_dssp -CTTTTCEEEE-CGGGGGGHHHHHHHHHHTTCEEESS--CCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHH
T ss_pred cCCCCCeEEEE-eCCChHhHHHHHHHHHHcCCEEecc--ccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHH
Confidence 56999999999 7777678999999999999999999 6899999999431 3344456899999999999999
Q ss_pred hhCCcCccCCcChH
Q 012081 271 KEKHVQRLVHISAD 284 (471)
Q Consensus 271 k~g~lqp~~~ys~d 284 (471)
++++++|+..|++.
T Consensus 90 ~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 90 QECKHLPESLYPHT 103 (107)
T ss_dssp HHTSCCCGGGCCTT
T ss_pred HhCCCCchhhCCCC
Confidence 99999999999753
No 33
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.3e-12 Score=113.60 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch---HHHHhcCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s---~~k~l~~~~~IVs~~WL~dcik~g 273 (471)
..+|.|++|+| +|+....|..|.++|..+||++... +..++||||+.... ++++...+++||+++||+||++.+
T Consensus 20 ~~~f~g~~i~i-tG~~~~~r~~l~~~i~~~Gg~v~~~--~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~ 96 (129)
T 2d8m_A 20 GKILQGVVVVL-SGFQNPFRSELRDKALELGAKYRPD--WTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMR 96 (129)
T ss_dssp TTTSTTEEEEE-ESCCTTHHHHHHHHHHHTTEEEESS--CCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTT
T ss_pred cccCCCeEEEE-eCCCcHHHHHHHHHHHHcCCEEeCC--cCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhC
Confidence 46899999999 8888778999999999999999998 68899999998753 344446799999999999999999
Q ss_pred CcCccCCcChH
Q 012081 274 HVQRLVHISAD 284 (471)
Q Consensus 274 ~lqp~~~ys~d 284 (471)
+++++..|...
T Consensus 97 ~~l~e~~Y~l~ 107 (129)
T 2d8m_A 97 RRLPSQRYLMA 107 (129)
T ss_dssp SCCCGGGGBCS
T ss_pred CcCChHhcccC
Confidence 99999988543
No 34
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.27 E-value=3.4e-12 Score=109.29 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEeCCC--CH-HHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch---HHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDV--SE-ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gf--s~-~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s---~~k~l~~~~~IVs~~WL~dci 270 (471)
..+|+|+++|++..- .. ...+.+..+++.+||++++. +..++||||+.+.. .++....+++||++.||.+|+
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~--l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~ 82 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKT--FNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCR 82 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSS--CCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHH
Confidence 458999999995321 11 23467999999999999999 68999999997743 444445789999999999999
Q ss_pred hhCCcCccCCcChHH-Hhhhhh
Q 012081 271 KEKHVQRLVHISADL-ARQVGM 291 (471)
Q Consensus 271 k~g~lqp~~~ys~dl-~r~~~~ 291 (471)
++|+++++..|.... ..++|.
T Consensus 83 ~~~~~vdE~~Y~i~~~~~~~~~ 104 (107)
T 3pa6_A 83 TAGAHIDESLFPAANMNEHLSS 104 (107)
T ss_dssp HHTSCCCGGGSBCCCTTTTC--
T ss_pred HhCccCChhcccCCCCcccccc
Confidence 999999999997653 355544
No 35
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.7e-12 Score=105.44 Aligned_cols=81 Identities=11% Similarity=0.211 Sum_probs=64.9
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc---------cCCCCceEEEEcCchHHHHhcCCCceechhHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW---------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVL 267 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~---------~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~ 267 (471)
..+|+|+.|||....+ +..|+.+|+++||.++... ..+..+||+|++.+..++ ...+..+|+|+||+
T Consensus 10 ~~LF~g~~F~i~~e~p---~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-~~~~r~~VqPqWV~ 85 (100)
T 2ep8_A 10 KKLFEGLKFFLNREVP---REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-SVIGRCYVQPQWVF 85 (100)
T ss_dssp CCTTSSCEEECCSSSC---HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-CBTTBEEECTHHHH
T ss_pred HHHcCCcEEEEecCCC---HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-hcCCCeEEcchHHH
Confidence 6799999999955444 5778889999999998641 125789999998865433 22445899999999
Q ss_pred HHHhhCCcCccCCc
Q 012081 268 KTAKEKHVQRLVHI 281 (471)
Q Consensus 268 dcik~g~lqp~~~y 281 (471)
||+++++++|+.+|
T Consensus 86 Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 86 DSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHTSCCCTTTC
T ss_pred HHHhcCCcCChhhc
Confidence 99999999999887
No 36
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.24 E-value=1e-11 Score=103.45 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
...+|.|++||+||.....|.+++++|+.+||++...+++.++|||++...|.|+++|.++ +|+||+.+|+.+++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l----gI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL----GVPTLTEEELYRLLE 79 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS----SSCCEEHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc----CCcEEeHHHHHHHHH
Confidence 4567999999999977669999999999999999999999999999999999999999997 899999999999986
Q ss_pred c
Q 012081 134 R 134 (471)
Q Consensus 134 ~ 134 (471)
.
T Consensus 80 ~ 80 (92)
T 1l7b_A 80 A 80 (92)
T ss_dssp H
T ss_pred h
Confidence 3
No 37
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.22 E-value=1.4e-11 Score=101.65 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCchHHHHhcCCCceechhHHHHHHhhCCcC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQ 276 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s~~k~l~~~~~IVs~~WL~dcik~g~lq 276 (471)
+.+|.|++|||..+++.. +.|+++|.++||.++... ...++||||+..+ ...+.++|+|+||+||+++|+++
T Consensus 14 pdiFsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~-~~~~vTHvI~~~~-----~~~~~~~V~p~WI~dcI~k~~Ll 85 (88)
T 3pc7_A 14 LDIFTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEF-DMTSATHVLGSRD-----KNPAAQQVSPEWIWACIRKRRLV 85 (88)
T ss_dssp CCCSTTCEECCCTTSTTH--HHHHHHHHHTTCEECCGG-GGGGCSEEESCCT-----TCTTSEEECHHHHHHHHHHTSCC
T ss_pred ChhhcCeEEEccCCcCch--hhheeeeeecCCEEeccc-CCCcCeEEecCCC-----cCCCCcEEchHHHHHHHhCCccc
Confidence 679999999997677654 789999999999998862 3459999998764 24577899999999999999999
Q ss_pred cc
Q 012081 277 RL 278 (471)
Q Consensus 277 p~ 278 (471)
|.
T Consensus 86 ~~ 87 (88)
T 3pc7_A 86 AP 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 38
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.3e-11 Score=103.67 Aligned_cols=84 Identities=12% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCCCCCCcEEEEe-CCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhc-------CCCceechh
Q 012081 196 MNSTLSGCSMYVD-SDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMG-------HSNNLVTPV 264 (471)
Q Consensus 196 ~~~lF~G~~Iyl~-~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~-------~~~~IVs~~ 264 (471)
+..+|+|++|||. .++....++.+.++++++||+|++. +++.+||||+++. ++.+++. .+.++|+..
T Consensus 17 p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~--ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~ 94 (120)
T 2coe_A 17 QDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENE--LSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVS 94 (120)
T ss_dssp SCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSS--CCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHH
T ss_pred cccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeec--cCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecH
Confidence 4789999999994 4678889999999999999999999 6999999999763 3555542 368999999
Q ss_pred HHHHHHhhCCcCccCCc
Q 012081 265 WVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 265 WL~dcik~g~lqp~~~y 281 (471)
||.+|+++|.++++..+
T Consensus 95 Wl~esmk~g~lv~ee~~ 111 (120)
T 2coe_A 95 WLIECIGAGKPVEMTGK 111 (120)
T ss_dssp HHHHHHHTTSCCCCSSS
T ss_pred HHHHHHHcCCccCcccc
Confidence 99999999999998654
No 39
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.16 E-value=1.1e-10 Score=100.22 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceEecchHHHH
Q 012081 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~IV~p~WI~D 130 (471)
....+|.|.+||+||... -.|.+++++|+.+||++...+++.++|||++...+ .|++.|.++ ||+||+.+||.+
T Consensus 28 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l----gI~Ii~E~~f~~ 103 (109)
T 2k6g_A 28 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL----GTKIIDEDGLLN 103 (109)
T ss_dssp CCTTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH----TCEEECHHHHHH
T ss_pred CCCCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc----CCeEEeHHHHHH
Confidence 345689999999999775 58999999999999999999999999999999888 899999997 899999999999
Q ss_pred HHHcc
Q 012081 131 SVRRN 135 (471)
Q Consensus 131 cik~g 135 (471)
.+..+
T Consensus 104 ll~~~ 108 (109)
T 2k6g_A 104 LIRNL 108 (109)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 98764
No 40
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=8.4e-11 Score=99.38 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=67.0
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEccc-----------CCCCceEEEEecCCCHHHHHHHhcCCCCCce
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFGGRKFEHALKHGSRNGLY 121 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~-----------l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~ 121 (471)
....+|+|++|++.+- -.|+.|+.+|..+||++..+ .+..+||+|+......+ + ..+..
T Consensus 8 ~~~~LF~g~~F~i~~e--~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-----~---~~~r~ 77 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNRE--VPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-----S---VIGRC 77 (100)
T ss_dssp CSCCTTSSCEEECCSS--SCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-----C---BTTBE
T ss_pred chHHHcCCcEEEEecC--CCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-----h---cCCCe
Confidence 3568999999999763 35789999999999999875 24689999998764322 1 13679
Q ss_pred EecchHHHHHHHcccCCCCCccc
Q 012081 122 IVTLGWFVDSVRRNVRLSESLYT 144 (471)
Q Consensus 122 IV~p~WI~Dcik~g~~lde~~Y~ 144 (471)
+|.|+||.||+.++++||+++|.
T Consensus 78 ~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 78 YVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp EECTHHHHHHHHHTSCCCTTTCC
T ss_pred EEcchHHHHHHhcCCcCChhhcC
Confidence 99999999999999999999984
No 41
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=104.46 Aligned_cols=85 Identities=16% Similarity=0.246 Sum_probs=68.0
Q ss_pred CCCCCCCcEEEEeC-CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcC----chHHHHh-----cCCCceechhH
Q 012081 196 MNSTLSGCSMYVDS-DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE----DSVQKYM-----GHSNNLVTPVW 265 (471)
Q Consensus 196 ~~~lF~G~~Iyl~~-gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~----~s~~k~l-----~~~~~IVs~~W 265 (471)
++.+|+||+|||.+ +.....++.....++.+||++++. +++++||||+.+ .+..+++ ..+++||+++|
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~--~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPA--QGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCST--TCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeec--cCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCch
Confidence 36799999999943 444455677778999999999999 588999999985 2334444 24568999999
Q ss_pred HHHHHhhCCcCccCCcC
Q 012081 266 VLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 266 L~dcik~g~lqp~~~ys 282 (471)
+.||+++++++++..|.
T Consensus 86 v~dci~~~~llde~~y~ 102 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFS 102 (106)
T ss_dssp HHHHHHTCSCCCGGGTB
T ss_pred HHHHHhcCcccCccccc
Confidence 99999999999998873
No 42
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.4e-10 Score=96.81 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceEecchHHHH
Q 012081 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~IV~p~WI~D 130 (471)
....+|.|++||+||... -.|.+++++|+.+||++...+++.++|||+....+ .|+++|.++ +|+||+.+||.+
T Consensus 18 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~l----gI~IisE~~f~~ 93 (112)
T 2ebu_A 18 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL----GTKIIDEDGLLN 93 (112)
T ss_dssp CCSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHH----TCEEEEHHHHHH
T ss_pred CCCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHc----CCeEEeHHHHHH
Confidence 344689999999999775 58999999999999999999999999999999888 999999997 899999999999
Q ss_pred HHHc
Q 012081 131 SVRR 134 (471)
Q Consensus 131 cik~ 134 (471)
.+..
T Consensus 94 ll~~ 97 (112)
T 2ebu_A 94 LIRT 97 (112)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9974
No 43
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.04 E-value=6.8e-10 Score=109.08 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=71.3
Q ss_pred CCCCCCCcEEEEeCCCh----------hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCceE
Q 012081 54 ANAPFSGLVICVTGLSK----------EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYI 122 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~----------~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g-~Ky~~A~k~~~~~gi~I 122 (471)
+..+|+|++|.+.++.. .....++.+|..+||++...++..+||+|+..... .+...+++.....+++|
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEE
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEE
Confidence 45799999999977531 13344689999999999999999999999987543 22223333223357899
Q ss_pred ecchHHHHHHHcccCCCCCcccc
Q 012081 123 VTLGWFVDSVRRNVRLSESLYTV 145 (471)
Q Consensus 123 V~p~WI~Dcik~g~~lde~~Y~l 145 (471)
|+++||.||++.|+++||++|.+
T Consensus 241 V~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EETHHHHHHHHTTSCCCGGGTBC
T ss_pred eChHHHHHHHHcCCcCCHhhCCC
Confidence 99999999999999999999964
No 44
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.01 E-value=7.6e-10 Score=95.48 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecC---CCHHHHHHHhcCCCCCceEecchHHH--
Q 012081 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFV-- 129 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~---~g~Ky~~A~k~~~~~gi~IV~p~WI~-- 129 (471)
..+|.|++|++||-....|.+++++|+.+||++...+++.++|||+... .+.|+++|.+. ||+||+.+||.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~l----gI~IvsE~~l~~~ 83 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEA----NIRVVSEDFLQDV 83 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHT----TCCEECTHHHHHH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHC----CCcEEeHHHHHHH
Confidence 5679999999999776699999999999999999999999999999943 68999999996 89999999955
Q ss_pred --------HHHHcccCCCCCc
Q 012081 130 --------DSVRRNVRLSESL 142 (471)
Q Consensus 130 --------Dcik~g~~lde~~ 142 (471)
+|++.....|+..
T Consensus 84 ~~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 84 SASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp HSCCSCHHHHHHHTBCSSCCC
T ss_pred HhhchhHHHHHHHhcCCCCCC
Confidence 4555555555443
No 45
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.97 E-value=4.5e-10 Score=95.82 Aligned_cols=91 Identities=22% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEe--CCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhc----CCCCCceEecchH
Q 012081 54 ANAPFSGLVICVT--GLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH----GSRNGLYIVTLGW 127 (471)
Q Consensus 54 ~~~iF~GlvI~vT--G~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~----~~~~gi~IV~p~W 127 (471)
+..+|+|++|.+- +.....++...+.+..+||++...++..+||+|+.+..+ ++..+++ .+..++.||+++|
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s--~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMD--YERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSC--HHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCC--HHHHHHHHhhcccCCCcEEecCch
Confidence 5689999999884 433455666677899999999999999999999985433 3333332 1234678999999
Q ss_pred HHHHHHcccCCCCCccccc
Q 012081 128 FVDSVRRNVRLSESLYTVK 146 (471)
Q Consensus 128 I~Dcik~g~~lde~~Y~l~ 146 (471)
+.||++.|+++||+.|.+.
T Consensus 86 v~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHTCSCCCGGGTBCS
T ss_pred HHHHHhcCcccCccccccc
Confidence 9999999999999999764
No 46
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.96 E-value=1.7e-09 Score=102.15 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=90.7
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcC---chHHHHh---cCCCceechhHHHHHHhhCCc
Q 012081 202 GCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---DSVQKYM---GHSNNLVTPVWVLKTAKEKHV 275 (471)
Q Consensus 202 G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~---~s~~k~l---~~~~~IVs~~WL~dcik~g~l 275 (471)
|+.|++ +|++..+++.|.++++.+||.+++. .+.++||||+.. ....||+ ..++.||+++||.+|+++|++
T Consensus 2 ~~vi~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~ 78 (210)
T 2nte_A 2 PLVLIG-SGLSSEQQKMLSELAVILKAKKYTE--FDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVC 78 (210)
T ss_dssp CCEEEE-SSCCHHHHHHHHHHHHHTTCEEESS--CCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHHcCCEEeCC--CCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCc
Confidence 578888 9999999999999999999999998 588999999976 3344554 588999999999999999999
Q ss_pred CccCCcChHHHhhhhhhHhhhcccccccccc-CCCCCCCcccccccccHHHHHHHHHHHhcccccccc
Q 012081 276 QRLVHISADLARQVGMMLENIQNGIAREEIN-GGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRS 342 (471)
Q Consensus 276 qp~~~ys~dl~r~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~v~~~~~ 342 (471)
+++..|...-......+ +..+ ....++ |...- ..+.-....+++-++||+++...|..+.+
T Consensus 79 ~~e~~y~~~~~~~~~r~--~~~~--~~~~lF~g~~~~--l~~~~~~~~~~~l~~lI~~~GG~v~~~~p 140 (210)
T 2nte_A 79 EQEEKYEIPEGPRRSRL--NREQ--LLPKLFDGCYFY--LWGTFKHHPKDNLIKLVTAGGGQILSRKP 140 (210)
T ss_dssp CCGGGTBCTTHHHHHHH--HHHT--TCCCTTTTCEEE--ECSCCSSSCHHHHHHHHHHTTCEEESSCC
T ss_pred CChhhccCCCCChhhhh--cccc--ccccccCceEEE--EeccCCCCCHHHHHHHHHHCCCEEEecCC
Confidence 99998865321111000 0000 011222 11100 00111134688899999998777765554
No 47
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.95 E-value=4.5e-10 Score=109.80 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred CCCCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC--HH----HHHHHhcCC-----CCCc
Q 012081 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RK----FEHALKHGS-----RNGL 120 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g--~K----y~~A~k~~~-----~~gi 120 (471)
.+..+|+|++|++.++.. ..++.++.+|..+||++..+++..+||+|+..... .+ .+..+..+. ..++
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKI 235 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCC
Confidence 456799999999999754 55567788999999999999987777777754321 22 222211110 0244
Q ss_pred -eEecchHHHHHHHcccCCCCCcccccc
Q 012081 121 -YIVTLGWFVDSVRRNVRLSESLYTVKS 147 (471)
Q Consensus 121 -~IV~p~WI~Dcik~g~~lde~~Y~l~~ 147 (471)
+||+++||.||++.|+++||++|.+.+
T Consensus 236 ~~iV~~~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 236 ARVVAPEWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp CEEECTHHHHHHHTTSCCCSSCCC----
T ss_pred CEEecHHHHHHHHHcCCcCCHHHcCCCC
Confidence 999999999999999999999998754
No 48
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.93 E-value=2.2e-09 Score=102.34 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------hHHHHh---cCCCceechhHHHHH
Q 012081 199 TLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLKT 269 (471)
Q Consensus 199 lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------s~~k~l---~~~~~IVs~~WL~dc 269 (471)
.++++.|++ +|+++.+++.|.++++.+||.+++. ....+||||+... ...||+ ..++.||+++||.+|
T Consensus 4 ~~~~~~i~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~ 80 (229)
T 1l0b_A 4 AERDISMVV-SGLTPKEVMIVQKFAEKYRLALTDV--ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKS 80 (229)
T ss_dssp CCCCCEEEE-ESCCHHHHHHHHHHHHHTTCEECSS--CCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHH
T ss_pred CCCCeEEEE-cCCCHHHHHHHHHHHHHcCCEEeCC--cCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHH
Confidence 578899999 9999999999999999999999998 5889999999864 234554 589999999999999
Q ss_pred HhhCCcCccCCcC
Q 012081 270 AKEKHVQRLVHIS 282 (471)
Q Consensus 270 ik~g~lqp~~~ys 282 (471)
+++|+++++..|.
T Consensus 81 ~~~~~~~~e~~y~ 93 (229)
T 1l0b_A 81 IQERKLLSVHEFE 93 (229)
T ss_dssp HTTTSCCCSGGGB
T ss_pred HHCCCcCChHHeE
Confidence 9999999998874
No 49
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.90 E-value=2.1e-09 Score=101.09 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc------hHHHHh---cCCCceechhHHHHHHh
Q 012081 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 201 ~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~------s~~k~l---~~~~~IVs~~WL~dcik 271 (471)
+|+.|++ +|++..+++.|.++++.+||.+.+. .+.++||||+... ...||+ ..++.||+++||.||++
T Consensus 3 ~~~~~~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~ 79 (214)
T 1t15_A 3 KRMSMVV-SGLTPEEFMLVYKFARKHHITLTNL--ITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79 (214)
T ss_dssp -CCEEEE-ESCCHHHHHHHHHHHHHHTCEECSS--CCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CcEEEEE-CCCCHHHHHHHHHHHHHhCCEEeCc--cCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHH
Confidence 4678888 9999999999999999999999998 5899999999864 234554 58899999999999999
Q ss_pred hCCcCccCCcCh
Q 012081 272 EKHVQRLVHISA 283 (471)
Q Consensus 272 ~g~lqp~~~ys~ 283 (471)
+|+++++..|..
T Consensus 80 ~~~~~~e~~y~~ 91 (214)
T 1t15_A 80 ERKMLNEHDFEV 91 (214)
T ss_dssp TTSCCCGGGGBC
T ss_pred CCCcCChHHeEe
Confidence 999999988753
No 50
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.90 E-value=1e-09 Score=103.48 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCCCCCCc-EEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 54 ANAPFSGL-VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 54 ~~~iF~Gl-vI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
..++|+|+ ++|++++....++.|+++|+.+||++..++. .++++|+.... +.. .++++|+|+||.||+
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~~------~~~----~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVIGPYSG------KKK----ATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESCCCS------CCC----TTCEEECHHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeCCch------hcc----CCCcEEChhHHHHHH
Confidence 46899999 6899999888899999999999999999984 56777754322 222 489999999999999
Q ss_pred HcccCCCCCccccc
Q 012081 133 RRNVRLSESLYTVK 146 (471)
Q Consensus 133 k~g~~lde~~Y~l~ 146 (471)
.+++++|+++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999763
No 51
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.86 E-value=3.6e-09 Score=87.15 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCC-CceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHH
Q 012081 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~-~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dc 131 (471)
..+.+|.|++|.+.+=.++ ...|++.|.++||.+...++. ++||+|+... + ..+..+|+|+||+||
T Consensus 12 ~LpdiFsg~~~~l~~~v~~-~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~---------~---~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 12 VLLDIFTGVRLYLPPSTPD-FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD---------K---NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCCCSTTCEECCCTTSTT-HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT---------T---CTTSEEECHHHHHHH
T ss_pred cCChhhcCeEEEccCCcCc-hhhheeeeeecCCEEecccCCCcCeEEecCCC---------c---CCCCcEEchHHHHHH
Confidence 4578999999999654333 378899999999999888775 9999997653 2 258999999999999
Q ss_pred HHcccCCCC
Q 012081 132 VRRNVRLSE 140 (471)
Q Consensus 132 ik~g~~lde 140 (471)
++++++|+.
T Consensus 79 I~k~~Ll~~ 87 (88)
T 3pc7_A 79 IRKRRLVAP 87 (88)
T ss_dssp HHHTSCCSC
T ss_pred HhCCcccCC
Confidence 999999975
No 52
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.85 E-value=3.8e-09 Score=101.06 Aligned_cols=139 Identities=9% Similarity=0.009 Sum_probs=93.5
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc-hHHHHh---cCCCceechhHHHHHHhhC
Q 012081 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 198 ~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~-s~~k~l---~~~~~IVs~~WL~dcik~g 273 (471)
..+.|++|++ +||++.+++.+.++|+.+||.++++ ..++||||+... ...||+ ..++.||+++||.+|+++|
T Consensus 12 ~~~~~~~i~~-SG~~~~~~~~l~~~i~~lGg~v~~~---~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~ 87 (219)
T 3sqd_A 12 TPELTPFVLF-TGFEPVQVQQYIKKLYILGGEVAES---AQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQ 87 (219)
T ss_dssp CGGGCCEEEE-CSCCHHHHHHHHHHHHHTTCEECSS---GGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEE-eCCChHHHHHHHHHHHHCCCEEeCC---CCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcC
Confidence 4578999999 9999999999999999999999988 388999999763 233444 6889999999999999999
Q ss_pred CcCccCCcChHH---HhhhhhhHhhhccccccccccCCCCCCCcccccccccHHHHHHHHHHHhcccccccc
Q 012081 274 HVQRLVHISADL---ARQVGMMLENIQNGIAREEINGGNVPEDAQSCKNKISQEKRQQTVNLAKNGVRSRRS 342 (471)
Q Consensus 274 ~lqp~~~ys~dl---~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~a~~~v~~~~~ 342 (471)
+++++..|.... .+..+.-++..-.......++.+- .---+.....++++-++||+++...|-.+.+
T Consensus 88 ~~l~e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~--~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p 157 (219)
T 3sqd_A 88 KFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAK--YFYITPGICPSLSTMKAIVECAGGKVLSKQP 157 (219)
T ss_dssp SCCCSGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTE--EEEECTTCSSCHHHHHHHHHHTTCEEESSCC
T ss_pred CCCChHhccCCCchhhhhcCCChHHHhhhhccccccCCc--EEEEeCCCCCCHHHHHHHHHHCCCEEECCCC
Confidence 999999885432 111111111100000011222110 0000111234578999999999877765544
No 53
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.82 E-value=3.8e-09 Score=108.73 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEeCCCCH----HHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch---HHHHhcC-CCceechhHHHH
Q 012081 197 NSTLSGCSMYVDSDVSE----ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGH-SNNLVTPVWVLK 268 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~----~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s---~~k~l~~-~~~IVs~~WL~d 268 (471)
..+|+||+|+| +|+-+ .++..+.+++..+||+++.+ ++.++||||+.... .+++... +++||+++||++
T Consensus 280 ~~~L~G~~ivf-SG~~~~~~~~~~~~l~~l~~~lGa~v~~~--vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEE-ESSSCTTSCTTTSHHHHHHHHTTCEEESS--SSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHH
T ss_pred hhhcCCcEEEE-ecccCCCcchhHHHHHHHHHHcCCEEeCc--CCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHH
Confidence 47999999999 76642 24578999999999999999 68999999998743 3344455 799999999999
Q ss_pred HHhhCCcCccCCcC
Q 012081 269 TAKEKHVQRLVHIS 282 (471)
Q Consensus 269 cik~g~lqp~~~ys 282 (471)
|++.++.+++..|.
T Consensus 357 c~~~~~~vdE~~Y~ 370 (372)
T 3ef0_A 357 SLSQWKRLPESDYL 370 (372)
T ss_dssp HHHTTSCCCGGGGB
T ss_pred HHHhCCcCChhhce
Confidence 99999999998875
No 54
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.82 E-value=9.2e-09 Score=99.46 Aligned_cols=83 Identities=8% Similarity=0.083 Sum_probs=70.0
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc-hHHHHh---cCCCceechhHHHHHHhhCC
Q 012081 199 TLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEKH 274 (471)
Q Consensus 199 lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~-s~~k~l---~~~~~IVs~~WL~dcik~g~ 274 (471)
.-++.+|.+ +|++.++++.+.++|+.+||.++++...+.+|||||+... ...||+ ..++.||+++||.+|+++|+
T Consensus 6 ~~~~~~~~~-Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~ 84 (235)
T 3al2_A 6 LKKQYIFQL-SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGH 84 (235)
T ss_dssp --CCCEEEE-ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTS
T ss_pred CCCCEEEEE-cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCC
Confidence 446789999 8999999999999999999999863114789999999884 355555 68999999999999999999
Q ss_pred cCccCCcC
Q 012081 275 VQRLVHIS 282 (471)
Q Consensus 275 lqp~~~ys 282 (471)
++++..|.
T Consensus 85 ~l~E~~ye 92 (235)
T 3al2_A 85 FVQEEDYE 92 (235)
T ss_dssp CCCSGGGB
T ss_pred CCChhcee
Confidence 99998885
No 55
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.6e-08 Score=85.75 Aligned_cols=93 Identities=17% Similarity=0.289 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEeCC--ChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhc---CCCCCceEecchH
Q 012081 53 PANAPFSGLVICVTGL--SKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH---GSRNGLYIVTLGW 127 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG~--~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~---~~~~gi~IV~p~W 127 (471)
.+...|.|++|.+..+ ...-++-+.+++..+||++...++..+||+|+.+........-++. ....+..||+..|
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~W 95 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSW 95 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHH
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHH
Confidence 4668999999999654 3457788899999999999999999999999974433333332221 1123579999999
Q ss_pred HHHHHHcccCCCCCcccc
Q 012081 128 FVDSVRRNVRLSESLYTV 145 (471)
Q Consensus 128 I~Dcik~g~~lde~~Y~l 145 (471)
|.+|+++|+++||+.|..
T Consensus 96 l~esmk~g~lv~ee~~~~ 113 (120)
T 2coe_A 96 LIECIGAGKPVEMTGKHQ 113 (120)
T ss_dssp HHHHHHTTSCCCCSSSSB
T ss_pred HHHHHHcCCccCcccceE
Confidence 999999999999966544
No 56
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.76 E-value=8.9e-09 Score=90.55 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEeC--CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHh----------cCCCcee
Q 012081 197 NSTLSGCSMYVDS--DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYM----------GHSNNLV 261 (471)
Q Consensus 197 ~~lF~G~~Iyl~~--gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l----------~~~~~IV 261 (471)
...|.|++||| . ++....++.|.++++..|++|.+. +.+.+||||+++. ++.+|| ..++++|
T Consensus 8 ~~~F~~v~iyi-ve~kmG~sRr~fL~~la~~kGf~v~~~--~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lL 84 (133)
T 2dun_A 8 STRFPGVAIYL-VEPRMGRSRRAFLTGLARSKGFRVLDA--CSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALL 84 (133)
T ss_dssp SCSEEEEEEEE-CHHHHCSHHHHHHHHHHHHHTEEECSS--CCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEE
T ss_pred ccccCccEEEE-ecCCcCHHHHHHHHHHHHhcCCEeccc--cCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEe
Confidence 46899999999 4 355668999999999999999999 7999999999774 455555 1557999
Q ss_pred chhHHHHHHhhCCcCccCCc
Q 012081 262 TPVWVLKTAKEKHVQRLVHI 281 (471)
Q Consensus 262 s~~WL~dcik~g~lqp~~~y 281 (471)
...||.+|+++|+++++..+
T Consensus 85 disWltecm~~g~pV~~e~~ 104 (133)
T 2dun_A 85 DISWLTESLGAGQPVPVECR 104 (133)
T ss_dssp EHHHHHHHHHHTSCCCCCTT
T ss_pred ccHHHHHHHhcCCcCCcccc
Confidence 99999999999999998643
No 57
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.73 E-value=1.6e-08 Score=99.08 Aligned_cols=85 Identities=9% Similarity=0.195 Sum_probs=67.3
Q ss_pred CCCCCCcEEEEeCCCCHH-----------------------------HHHHHHHHHHhCCCEEEccccCCC------Cce
Q 012081 197 NSTLSGCSMYVDSDVSEE-----------------------------LRNKVFEAATNEGATLVNQWFVGC------GAS 241 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~-----------------------------~r~~L~~lI~~~GG~v~d~~~~~~------~vT 241 (471)
..+|.|+.|+| ++.+.. .+..|+++|+.+||+|++++ .. ..|
T Consensus 13 ~~iF~g~~F~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~--~~~~~~~~~~t 89 (259)
T 1kzy_C 13 KTLFLGYAFLL-TMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDF--NEAQCNTAYQC 89 (259)
T ss_dssp TTTTTTEEEEE-CCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSC--CTTTTTTTCEE
T ss_pred CcCcCCcEEEE-EcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCc--cccccccCCCe
Confidence 57999999999 766543 44689999999999999883 32 268
Q ss_pred EEEEcC-chHHHHh---cCCCceechhHHHHHHhhCCcCccCCcChH
Q 012081 242 YVVCEE-DSVQKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHISAD 284 (471)
Q Consensus 242 HVVv~~-~s~~k~l---~~~~~IVs~~WL~dcik~g~lqp~~~ys~d 284 (471)
|+|+.. ....||+ ..++.||++.||.||+++++++++.+|-.+
T Consensus 90 ~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 90 LLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 999877 2334454 589999999999999999999998887543
No 58
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.72 E-value=1.4e-08 Score=98.44 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=66.0
Q ss_pred CCCCCcEEEEeCC--CCHHHHHHHHHHHHhCCCEEEccc----c-CCC-------------------CceEEEEcCch-H
Q 012081 198 STLSGCSMYVDSD--VSEELRNKVFEAATNEGATLVNQW----F-VGC-------------------GASYVVCEEDS-V 250 (471)
Q Consensus 198 ~lF~G~~Iyl~~g--fs~~~r~~L~~lI~~~GG~v~d~~----~-~~~-------------------~vTHVVv~~~s-~ 250 (471)
.+|+||.|+|... ++...+..|.++|+.+||+++++. | ... ..||||+.... .
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3899999999433 466778899999999999999861 1 111 34999988632 3
Q ss_pred HHH---hcCCCceechhHHHHHHhhCCcCccCCcC
Q 012081 251 QKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (471)
Q Consensus 251 ~k~---l~~~~~IVs~~WL~dcik~g~lqp~~~ys 282 (471)
.|| +..++.||+++||.||+++++++|...|-
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~yl 115 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYL 115 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGB
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhcc
Confidence 444 46899999999999999999999887653
No 59
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.70 E-value=1.1e-08 Score=107.05 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEeCCCCHH----HHHHHHHHHHhCCCEEEccccCCCCceEEEEcCch---HHHHhcC-CCceechhHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEE----LRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGH-SNNLVTPVWVLK 268 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~----~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~s---~~k~l~~-~~~IVs~~WL~d 268 (471)
..+|.||+|+| +|+-+. .+..+.++|..+||++..+ ++.++||||+.... .+++... +++||+++||++
T Consensus 350 ~~~L~G~~Ivf-SG~~p~~~~~~r~~l~~~~~~lGa~~~~~--vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 350 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HTTSTTCEEEE-ESSSCTTSCSTTSHHHHHHHTTTCEECSS--SSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred hcccCCcEEEE-ecccCCCCCccHHHHHHHHHHcCCEEeCC--CCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHH
Confidence 46899999999 775432 4578999999999999999 69999999998754 3333444 699999999999
Q ss_pred HHhhCCcCccCCcC
Q 012081 269 TAKEKHVQRLVHIS 282 (471)
Q Consensus 269 cik~g~lqp~~~ys 282 (471)
|++.++.+++..|.
T Consensus 427 cl~~~krldE~~Yl 440 (442)
T 3ef1_A 427 SLSQWKRLPESDYL 440 (442)
T ss_dssp HHHHTSCCCGGGTB
T ss_pred HHHcCCcCChhccc
Confidence 99999999998875
No 60
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.61 E-value=8.2e-08 Score=90.82 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCC--ceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQ--CTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 56 ~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~--~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
++|+|+.|++++.....++.|.++|+.+||++...+.+. .+|+|+... ...++..+.++ +++||+++||.+|+
T Consensus 114 ~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~----~i~vvs~eWi~~sI 189 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRV----GLPLLSPEFLLTGV 189 (209)
T ss_dssp CTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHH----TCCEECTHHHHHHH
T ss_pred CCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHC----CCeEEcHHHHHHHH
Confidence 799999999999887788999999999999999888753 256666433 34567777776 79999999999999
Q ss_pred HcccCCCCCccccccc
Q 012081 133 RRNVRLSESLYTVKSI 148 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~ 148 (471)
...+ +|++.|.+...
T Consensus 190 ~~q~-ld~e~y~l~~~ 204 (209)
T 2etx_A 190 LKQE-AKPEAFVLSPL 204 (209)
T ss_dssp HHTC-CCGGGGBCCTT
T ss_pred Hhcc-cChHHheecCC
Confidence 9866 59999988643
No 61
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.49 E-value=2e-07 Score=81.97 Aligned_cols=90 Identities=12% Similarity=0.226 Sum_probs=71.6
Q ss_pred CCCCCCCCcEEEEeC--CChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcC---------CCCCce
Q 012081 53 PANAPFSGLVICVTG--LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG---------SRNGLY 121 (471)
Q Consensus 53 ~~~~iF~GlvI~vTG--~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~---------~~~gi~ 121 (471)
.+...|.|++|.+.. +...-|+-|.+++.++|+++...+++.+||+|+.+...+ .+++|. ...+..
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~---~~~~~L~~~~~~l~~~~~~~~ 82 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAE---EAVSWQERRMAAAPPGCTPPA 82 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHH---HHHHHHHHHHHHSCTTCCCCE
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHH---HHHHHHHHhhcccCcCCCCcE
Confidence 355889999999985 444688999999999999999999999999999554432 233321 124678
Q ss_pred EecchHHHHHHHcccCCCCCcccc
Q 012081 122 IVTLGWFVDSVRRNVRLSESLYTV 145 (471)
Q Consensus 122 IV~p~WI~Dcik~g~~lde~~Y~l 145 (471)
+|+..|+.+|++.|+.+|++.+..
T Consensus 83 lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 83 LLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp EEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred EeccHHHHHHHhcCCcCCcccceE
Confidence 999999999999999999865544
No 62
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.49 E-value=5.6e-08 Score=93.13 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=85.0
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc-hHHHHh---cCCCceechhHHHHHHhhCCc
Q 012081 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEKHV 275 (471)
Q Consensus 200 F~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~-s~~k~l---~~~~~IVs~~WL~dcik~g~l 275 (471)
-.+.+|.| +|+++.+ +.++|+.+||.++++ ..++||||+... ...|++ ..+++||+++||.+|+++|.+
T Consensus 6 ~~~~~v~f-SG~~~~~---~~~~i~~lGg~v~~~---~~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~ 78 (220)
T 3l41_A 6 SKRVYITF-TGYDKKP---SIDNLKKLDMSITSN---PSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEI 78 (220)
T ss_dssp -CCEEEEE-CSCSSCC---CCGGGGGGTEEECSC---TTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSC
T ss_pred cceEEEEE-eccCCCC---CcchHhhcceeeccC---chhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhc
Confidence 35678999 8998764 389999999999998 357999999873 344444 689999999999999999999
Q ss_pred CccCCcChH---HHhhhhhhHhh-hccccc-cccccCCCCCCCcccccc--cccHHHHHHHHHHHhccccc
Q 012081 276 QRLVHISAD---LARQVGMMLEN-IQNGIA-REEINGGNVPEDAQSCKN--KISQEKRQQTVNLAKNGVRS 339 (471)
Q Consensus 276 qp~~~ys~d---l~r~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~a~~~v~~ 339 (471)
+++.+|... .....+.-+++ ++...+ ...++.+---.- +... ..+.++-++||+++..-|-.
T Consensus 79 l~e~~y~l~d~~~e~~~~~~l~~~~~rar~~~~~LF~G~~f~i--t~~~~~~p~~~~l~~iI~~~GG~v~~ 147 (220)
T 3l41_A 79 VDEEPYLLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYL--TSKTVAPENVPAVISIVKSNGGVCST 147 (220)
T ss_dssp CCSGGGBCCCHHHHHHHTSCHHHHHHHHHHHCSCTTTTSEEEE--ETTSSCGGGHHHHHHHHHHTTCEEEE
T ss_pred cccCccccCCcHHHhhccccHHHHHHHHHhcCchhhhheeEEE--eccccCCCCCceEEEEEecCCcEech
Confidence 999999532 12222211111 111000 122221110000 1111 34678999999999877765
No 63
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.23 E-value=2.4e-06 Score=70.86 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHHhh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dcik~ 272 (471)
...|.|++|+|...++. .|+.+..+|..+||.+..+ +..+++|||+++. .++++...+++||+.+|+++++..
T Consensus 5 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~s--Vskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESC--CSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCc--ccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 46799999999434555 8999999999999999999 7899999999874 466666789999999999999864
No 64
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=98.21 E-value=9.5e-06 Score=78.42 Aligned_cols=175 Identities=11% Similarity=0.154 Sum_probs=116.6
Q ss_pred CCcEEEEeCCC-hh-hHHHHHHHHHHcCCEEcccCC--CCceEEEEecC-CCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 59 SGLVICVTGLS-KE-ARKQVMEATERLGGQYSPDLH--PQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 59 ~GlvI~vTG~~-~~-er~~L~~lI~~~GG~~~~~l~--~~~THLV~~~~-~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
-.+.+++||+. .. +..+ .+....+|=++.++.+ ..|+||||+.. .+.||..|+..+ +--.||+|+||.+|++
T Consensus 21 ~~i~ai~TGc~~~~~~~~D-~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~--P~~~il~p~FI~~~Lk 97 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVD-IEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFE--PLKFALKPEFIIDLLK 97 (256)
T ss_dssp CCEEEEESSSCSSCCCHHH-HHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTST--TCCEEECTHHHHHHHH
T ss_pred eeEEEEecCCcccccCHHH-HHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccC--ccceEeCHHHHHHHHH
Confidence 57889999998 31 1222 3455688999999986 37999999986 689999999853 2236999999999998
Q ss_pred c---cc------CCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCc-
Q 012081 134 R---NV------RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGC- 203 (471)
Q Consensus 134 ~---g~------~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~- 203 (471)
. |+ .++.++|.+++.... .+ . .....+.+|.|+
T Consensus 98 ~ih~~~~~~~~~~l~~~dY~L~d~~~E--------~l---~--------------------------r~~~~gkLf~~~~ 140 (256)
T 3t7k_A 98 QIHSKKDKLSQININLFDYEINGINES--------II---S--------------------------KTKLPTKVFERAN 140 (256)
T ss_dssp HHC-------CCCCCSSTTBCTTCCHH--------HH---H--------------------------HTTSSSCHHHHTT
T ss_pred HhhcCCcccccccCChhhccCCCcchh--------HH---h--------------------------hhccccccccCCc
Confidence 8 77 777888887643210 00 0 011236899998
Q ss_pred --EEEEeCCCCHHHHHHHHHHHHhCCCEE---Ecc-ccCC--------------CCceEEEEcCc-----hHHHHh---c
Q 012081 204 --SMYVDSDVSEELRNKVFEAATNEGATL---VNQ-WFVG--------------CGASYVVCEED-----SVQKYM---G 255 (471)
Q Consensus 204 --~Iyl~~gfs~~~r~~L~~lI~~~GG~v---~d~-~~~~--------------~~vTHVVv~~~-----s~~k~l---~ 255 (471)
+|++..++..- .+.++.+++.+||.= ... .+.. ....+|++... .+++.+ .
T Consensus 141 I~ciNls~dI~GG-~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~k~Fkk~~~~~~ 219 (256)
T 3t7k_A 141 IRCINLVNDIPGG-VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQVKKFTKLINDRD 219 (256)
T ss_dssp CCEEEEETTCTTC-HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHHHHHHHHHHHHS
T ss_pred ceeeeeccCCCCC-HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHHHHHHHHhhccc
Confidence 66666666643 367899999999952 222 1111 12347776552 234444 1
Q ss_pred --CCCceechhHHHHHHhhCC
Q 012081 256 --HSNNLVTPVWVLKTAKEKH 274 (471)
Q Consensus 256 --~~~~IVs~~WL~dcik~g~ 274 (471)
...-+|.=.|..+||=...
T Consensus 220 ~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 220 KNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp TTSCEEEECHHHHHHHHHTTS
T ss_pred ccceEEEEEcHHHHHHHhhee
Confidence 4567999999999996543
No 65
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=98.03 E-value=1.2e-05 Score=68.72 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc----hHHHHhcCCCceechhHHHHHHhh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~----s~~k~l~~~~~IVs~~WL~dcik~ 272 (471)
...|.|.+|.|...++.-.|+.+.++|..+||.|..+ +..+++|||+++. .++++...+++||+.+|+++.+..
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~s--VSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESS--CCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCc--ccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 4579999999944465546889999999999999999 7899999999884 345555689999999999999976
Q ss_pred C
Q 012081 273 K 273 (471)
Q Consensus 273 g 273 (471)
+
T Consensus 108 ~ 108 (109)
T 2k6g_A 108 L 108 (109)
T ss_dssp T
T ss_pred C
Confidence 5
No 66
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.96 E-value=1.1e-06 Score=96.40 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHHc
Q 012081 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~ 134 (471)
..+|.|++|++||.....|.+++++|+.+||++...+++++++||++...|.|+++|.+. ||+||+.+|+.+.+..
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~l----gI~Ii~E~~f~~~l~~ 660 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL----GVAVLTEEEFWRFLKE 660 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHC----CCeEEeHHHHHHHHhc
Confidence 357999999999976659999999999999999999999999999999999999999986 8999999999999875
Q ss_pred c
Q 012081 135 N 135 (471)
Q Consensus 135 g 135 (471)
+
T Consensus 661 ~ 661 (667)
T 1dgs_A 661 K 661 (667)
T ss_dssp -
T ss_pred C
Confidence 4
No 67
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.92 E-value=3.3e-05 Score=66.36 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=58.1
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcC------chHHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE------DSVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~------~s~~k~l~~~~~IVs~~WL~dci 270 (471)
...|.|++|.|...++. .|+.+.++|..+||++..+ +..+++|||+.+ ..++++...+++||+.+||.++.
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~s--VskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGT--ANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESC--STTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCc--cccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHH
Confidence 45799999999555765 7899999999999999999 788999999983 23566667899999999954443
No 68
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=2.3e-05 Score=67.24 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc----hHHHHhcCCCceechhHHHHHHhh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~----s~~k~l~~~~~IVs~~WL~dcik~ 272 (471)
...|.|++|.|...|+.-.|+.++++|..+||+|..+ +..+++|||+++. .++++...+++||+.+|+++.+..
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~ 97 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT 97 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSS--CCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEecc--ccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhh
Confidence 3579999999944455556899999999999999999 7899999999884 345555789999999999999975
Q ss_pred C
Q 012081 273 K 273 (471)
Q Consensus 273 g 273 (471)
+
T Consensus 98 ~ 98 (112)
T 2ebu_A 98 M 98 (112)
T ss_dssp S
T ss_pred C
Confidence 4
No 69
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.86 E-value=2e-06 Score=94.37 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCCh-hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCceEecchHHHHHHH
Q 012081 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 55 ~~iF~GlvI~vTG~~~-~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~WI~Dcik 133 (471)
..+|.|++|++||... -.|.+++++|+.+||++...+++++++||++...|.|+++|.+. ||+||+.+|+.+.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~l----gI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQEL----GIEVIDEAEMLRLLG 670 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHC----CCcEEcHHHHHHHhc
Confidence 4579999999999776 48999999999999999999999999999999999999999986 899999999988764
No 70
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=5e-05 Score=63.07 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=65.9
Q ss_pred CCCCCCCcEEEEeCCCh-----hhHHHHHHHHHHcCCEEcccCCCCc--eEEEEecCCCHHHHHHHhcCCCCCceEecch
Q 012081 54 ANAPFSGLVICVTGLSK-----EARKQVMEATERLGGQYSPDLHPQC--THLVVQSFGGRKFEHALKHGSRNGLYIVTLG 126 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~-----~er~~L~~lI~~~GG~~~~~l~~~~--THLV~~~~~g~Ky~~A~k~~~~~gi~IV~p~ 126 (471)
...+|+|+.|.+.--+. .+.++|+++|..+||.+...+.++. .+.|++.... .+++.|+|.
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHH
Confidence 45789999999964222 5789999999999999999987633 3555544322 268999999
Q ss_pred HHHHHHHcccCCCCCcccccc
Q 012081 127 WFVDSVRRNVRLSESLYTVKS 147 (471)
Q Consensus 127 WI~Dcik~g~~lde~~Y~l~~ 147 (471)
+|.+|+.++.+|+-.+|.++.
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCS
T ss_pred HHHHHHhcCceecccccccCc
Confidence 999999999999999999974
No 71
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.53 E-value=0.00055 Score=68.42 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=99.8
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHHcCCEEcccC-CCCceEEEEecCCC----HHHHHHHhcCCCCCceEecchHHHHHH
Q 012081 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDL-HPQCTHLVVQSFGG----RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (471)
Q Consensus 58 F~GlvI~vTG~~~~er~~L~~lI~~~GG~~~~~l-~~~~THLV~~~~~g----~Ky~~A~k~~~~~gi~IV~p~WI~Dci 132 (471)
+.-+++|++ +.+.+..+.+.++.+||++. ++ ...|||||+.+..+ .|...|+- ++++||+++||.+..
T Consensus 113 W~P~Vl~~S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI----~gkPIV~~~Fl~al~ 185 (325)
T 3huf_A 113 WRSMCIQFD--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFL----KKTVIIDDSYLQYLS 185 (325)
T ss_dssp ECCCCEEES--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHH----TTCEEECHHHHHHHT
T ss_pred EeeeEEEec--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHH----CCCcEecHHHHHHHH
Confidence 455667773 23467779999999999999 66 56899999986544 45888876 489999999999875
Q ss_pred HcccCCCCCccccccccccCcchhhhhcccCCcCCCCCCCCcccchhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 012081 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (471)
Q Consensus 133 k~g~~lde~~Y~l~~~~e~~~~~~~~~~L~~~s~~e~~~lp~~I~es~~s~s~E~ld~~~~~~~~~lF~G~~Iyl~~gfs 212 (471)
+..+-.-+..=.+++..+. .+.+. .+.|.... ....+ ..-|.|.++++ .+-+
T Consensus 186 ~~e~~~~~~~~~wPdp~df------lP~i~--~g~Ep~~~----~~~~~---------------~~~~~~~~~~~-~~~~ 237 (325)
T 3huf_A 186 TVKESVIEDASLMPDALEC------FKNII--KNNDQFPS----SPEDC---------------INSLEGFSCAM-LNTS 237 (325)
T ss_dssp TCTTCCCCTTSSHHHHHHH------HHHHH--TTCTTCCS----CHHHH---------------TTTTTTCEEEE-ETCC
T ss_pred HhhhhhhhcccCCCChHHc------CCCCC--CCCCCCCC----CHHHh---------------hcccCceEEEE-EcCc
Confidence 4321110000011100000 00000 00000000 01111 34689988888 3333
Q ss_pred HHHHHHHHHHHHhCCCEEEccc-------cCCCCceEEEEcCch--HHHH-hcCCCceechhHHHHHHhhCC
Q 012081 213 EELRNKVFEAATNEGATLVNQW-------FVGCGASYVVCEEDS--VQKY-MGHSNNLVTPVWVLKTAKEKH 274 (471)
Q Consensus 213 ~~~r~~L~~lI~~~GG~v~d~~-------~~~~~vTHVVv~~~s--~~k~-l~~~~~IVs~~WL~dcik~g~ 274 (471)
. .+.-++...|=.+..-+ .+-++..+||..+.- ..+. ...++.+.+.+=+++-+-+..
T Consensus 238 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (325)
T 3huf_A 238 S----ESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWKIIIERN 305 (325)
T ss_dssp H----HHHHHHHHTTCEEEEEC------CCSSSSCSEEEEC-------------CCCEEEHHHHHHHHHSSS
T ss_pred h----hhhHHHHHhcceeeeeeecccchHhhhccccEEEEcccccccccccCCcceEEEEHHHHHHHHhhcc
Confidence 2 35566777787776532 134566677776631 1221 256788888888888776644
No 72
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00016 Score=60.13 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCCCCCcEEEEeCCC----CHHHHHHHHHHHHhCCCEEEccccCCCCc--eEEEEcCchHHHHhcCCCceechhHHHHHH
Q 012081 197 NSTLSGCSMYVDSDV----SEELRNKVFEAATNEGATLVNQWFVGCGA--SYVVCEEDSVQKYMGHSNNLVTPVWVLKTA 270 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gf----s~~~r~~L~~lI~~~GG~v~d~~~~~~~v--THVVv~~~s~~k~l~~~~~IVs~~WL~dci 270 (471)
...|.|+.|||..+- +....+.|.++|+.+||+|+..+ ..+. .+.||++ |-......|+|.+|..|+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~l--P~~s~~~~yVVSp-----yN~t~LpTVtpTYI~aC~ 81 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSK--PRESKENVFIVSP-----YNHTNLPTVTPTYIKACC 81 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEEC--CCCCSSCCCCBCT-----TCCCSSSBCCTTHHHHHH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhC--cccccCCeEEEeC-----CCCCCCccccHHHHHHHH
Confidence 568999999996431 22356889999999999999883 3332 2444443 223467899999999999
Q ss_pred hhCCcCccCCcC
Q 012081 271 KEKHVQRLVHIS 282 (471)
Q Consensus 271 k~g~lqp~~~ys 282 (471)
.++.|+++.+|=
T Consensus 82 ~~nTLLnv~~YL 93 (106)
T 2l42_A 82 QSNSLLNMENYL 93 (106)
T ss_dssp HSTTSCGGGGCC
T ss_pred hcCceecccccc
Confidence 999999998884
No 73
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0055 Score=56.04 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=67.8
Q ss_pred CCCCCCCcEEEEeCCCh---hhHHHHHHHHHHcCCEEccc-CCCCceEEEEecCC----CHHHHHHHhcCCCCCceEecc
Q 012081 54 ANAPFSGLVICVTGLSK---EARKQVMEATERLGGQYSPD-LHPQCTHLVVQSFG----GRKFEHALKHGSRNGLYIVTL 125 (471)
Q Consensus 54 ~~~iF~GlvI~vTG~~~---~er~~L~~lI~~~GG~~~~~-l~~~~THLV~~~~~----g~Ky~~A~k~~~~~gi~IV~p 125 (471)
+-.-+.|+.+|+.-+++ ..--+|.+.....|+.-.+. +--++||.||.+.+ .+....|.. ++|+||.|
T Consensus 158 kmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakh----nnipivrp 233 (290)
T 4gns_A 158 KMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKH----NNIPIVRP 233 (290)
T ss_dssp CTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHH----TTCCEECT
T ss_pred ccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhc----cCCCccCH
Confidence 34567899999988876 34567888899999885544 43589999999864 345555554 59999999
Q ss_pred hHHHHHHHcccCCCCCccccc
Q 012081 126 GWFVDSVRRNVRLSESLYTVK 146 (471)
Q Consensus 126 ~WI~Dcik~g~~lde~~Y~l~ 146 (471)
+|+..|--..+.+.-..|.+.
T Consensus 234 ewvracevekrivgvrgfyld 254 (290)
T 4gns_A 234 EWVRACEVEKRIVGVRGFYLD 254 (290)
T ss_dssp HHHHHHHHTTSCCCSGGGBTT
T ss_pred HHHHHHhhhheeeeeeeEEEc
Confidence 999999988888777766664
No 74
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.62 E-value=0.0059 Score=67.00 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHHhhC
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKEK 273 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dcik~g 273 (471)
...|.|++|.|...++. .|+.++++|..+||++..+ ...++++||+++. .++|+...+++|++.+|+++.+..+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCc--ccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 45799999999444666 8999999999999999999 7889999999874 3455556899999999999999765
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=93.51 E-value=0.013 Score=64.27 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---hHHHHhcCCCceechhHHHHHHh
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAK 271 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s~~k~l~~~~~IVs~~WL~dcik 271 (471)
...|.|++|.|...++.-.|+.++++|..+||++..+ ...++++||+++. .++|+...+++|++.+|+++.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGS--VSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCc--ccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 4579999999944465557899999999999999999 7889999999874 34555568999999999998764
No 76
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=92.83 E-value=0.26 Score=49.22 Aligned_cols=86 Identities=6% Similarity=-0.016 Sum_probs=59.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc---h----HHHHhcCCCceechhHHHHHHhh-
Q 012081 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---S----VQKYMGHSNNLVTPVWVLKTAKE- 272 (471)
Q Consensus 201 ~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~---s----~~k~l~~~~~IVs~~WL~dcik~- 272 (471)
.-..+++ + +.+.+..|++.+...||.++ +| ....+||||+... . ...++-.+.+||+++||....+.
T Consensus 114 ~P~Vl~~-S--ske~~~~L~~~L~~LGik~v-~~-~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e 188 (325)
T 3huf_A 114 RSMCIQF-D--NPEMLSQWASNLNLLGIPTG-LR-DSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVK 188 (325)
T ss_dssp CCCCEEE-S--CHHHHHHHHHHHHTTTCCEE-SS-CCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCT
T ss_pred eeeEEEe-c--CHHHHHHHHHHHHHcCCEEE-Ec-cCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhh
Confidence 3345555 3 34466779999999999999 75 5777999999752 2 33344579999999999987632
Q ss_pred -CCcCccCCcChHHHhhhhhh
Q 012081 273 -KHVQRLVHISADLARQVGMM 292 (471)
Q Consensus 273 -g~lqp~~~ys~dl~r~~~~~ 292 (471)
..++. ..-.++...++|-+
T Consensus 189 ~~~~~~-~~~wPdp~dflP~i 208 (325)
T 3huf_A 189 ESVIED-ASLMPDALECFKNI 208 (325)
T ss_dssp TCCCCT-TSSHHHHHHHHHHH
T ss_pred hhhhhc-ccCCCChHHcCCCC
Confidence 22222 23456777888775
No 77
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.77 E-value=0.25 Score=45.22 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEeCCCCHH---HHHHHHHHHHhCCCEEEccccCCCCceEEEEcC---c----hHHHHhcCCCceechhHH
Q 012081 197 NSTLSGCSMYVDSDVSEE---LRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---D----SVQKYMGHSNNLVTPVWV 266 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~---~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~---~----s~~k~l~~~~~IVs~~WL 266 (471)
..-++|.++|+ ..+++- .--++.+-+.--|+.-.... ..-+.||.||.+ + ++.+.-..++.||.|+|+
T Consensus 159 mtdmsgitvcl-gpldplkeisdlqisqclshigarplqrh-vaidtthfvcndldneesneelirakhnnipivrpewv 236 (290)
T 4gns_A 159 MTDMSGITVCL-GPLDPLKEISDLQISQCLSHIGARPLQRH-VAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEWV 236 (290)
T ss_dssp TTCCTTCCEEE-CCCCGGGTCCHHHHHHHHHHTTCCCCBSS-CCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHHH
T ss_pred cccccCceEEe-cCCChhhhhhhccHHHHHHHhCCchhhhe-eeeecceeeecCCCcccchHHHHhhhccCCCccCHHHH
Confidence 44578999999 433321 11345666777788755442 566789999977 1 233333588999999999
Q ss_pred HHHHhhCCcCccCCcChHHHh
Q 012081 267 LKTAKEKHVQRLVHISADLAR 287 (471)
Q Consensus 267 ~dcik~g~lqp~~~ys~dl~r 287 (471)
-.|--++.++-+-.+..|..+
T Consensus 237 racevekrivgvrgfyldadq 257 (290)
T 4gns_A 237 RACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp HHHHHTTSCCCSGGGBTTSCG
T ss_pred HHHhhhheeeeeeeEEEcccH
Confidence 999999988887777666544
No 78
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=90.15 E-value=0.35 Score=46.71 Aligned_cols=73 Identities=11% Similarity=0.149 Sum_probs=49.7
Q ss_pred cEEEEeCCCC-----HHHHHHHHHHHHhCCCEEEccccCC--CCceEEEEcCc-hHHHHh---cCCCc--eechhHHHHH
Q 012081 203 CSMYVDSDVS-----EELRNKVFEAATNEGATLVNQWFVG--CGASYVVCEED-SVQKYM---GHSNN--LVTPVWVLKT 269 (471)
Q Consensus 203 ~~Iyl~~gfs-----~~~r~~L~~lI~~~GG~v~d~~~~~--~~vTHVVv~~~-s~~k~l---~~~~~--IVs~~WL~dc 269 (471)
++..+ +|+. ...+ +.++..|=.+++. .+ ..++||+.+.- ...||+ +.++- +|+|.||.+|
T Consensus 23 i~ai~-TGc~~~~~~~~D~----~~Lr~LGI~Iv~d--~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~ 95 (256)
T 3t7k_A 23 LKAVC-TGCFHDGFNEVDI----EILNQLGIKIFDN--IKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDL 95 (256)
T ss_dssp EEEEE-SSSCSSCCCHHHH----HHHHHTTEEECSS--CCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHH
T ss_pred EEEEe-cCCcccccCHHHH----HHHHHcCeEEEec--CcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHH
Confidence 45555 5554 4444 4455668888887 33 48999999882 344554 66664 9999999999
Q ss_pred Hhh---CC------cCccCCcC
Q 012081 270 AKE---KH------VQRLVHIS 282 (471)
Q Consensus 270 ik~---g~------lqp~~~ys 282 (471)
++. |+ +++..+|.
T Consensus 96 Lk~ih~~~~~~~~~~l~~~dY~ 117 (256)
T 3t7k_A 96 LKQIHSKKDKLSQININLFDYE 117 (256)
T ss_dssp HHHHC-------CCCCCSSTTB
T ss_pred HHHhhcCCcccccccCChhhcc
Confidence 998 77 77777776
No 79
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.57 Score=40.95 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC--------HHHHHHHhcCCCCCceEecchHHHHHHHc
Q 012081 72 ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (471)
Q Consensus 72 er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g--------~Ky~~A~k~~~~~gi~IV~p~WI~Dcik~ 134 (471)
.++.|++.+..+||++.+-++..+||+|+..... +=...|.+. +++|-+.+=+..-++.
T Consensus 31 ~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~----~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN----YMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHT----TCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHc----CCeeeeHHHHHHHHHh
Confidence 5678899999999999999999999999987632 224667775 8999998888766665
No 80
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=89.13 E-value=0.72 Score=41.45 Aligned_cols=74 Identities=11% Similarity=0.009 Sum_probs=55.4
Q ss_pred CCCC-CcEEEEeCCChh------------hHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC--------HHHHHHHhc
Q 012081 56 APFS-GLVICVTGLSKE------------ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKH 114 (471)
Q Consensus 56 ~iF~-GlvI~vTG~~~~------------er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g--------~Ky~~A~k~ 114 (471)
++|. +.+|.+-+...+ .+..+++.+..+|+++.+-++.++||||+..... +-+..|.+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~ 136 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN 136 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHT
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHc
Confidence 5787 799999877643 1244667888999999999999999999988632 236667663
Q ss_pred CCCCCceEecchHHHHHHH
Q 012081 115 GSRNGLYIVTLGWFVDSVR 133 (471)
Q Consensus 115 ~~~~gi~IV~p~WI~Dcik 133 (471)
+++|-+.+=+..-++
T Consensus 137 ----~mKVW~yeK~~RFLk 151 (160)
T 3qbz_A 137 ----YMKVWSYEKAARFLK 151 (160)
T ss_dssp ----TCEEEEHHHHHHHHH
T ss_pred ----CceecchHHHHHHHH
Confidence 789988776655554
No 81
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=87.80 E-value=2.2 Score=38.03 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=48.7
Q ss_pred CCCC-CCcEEEEeCC-C---CH-------HHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc--h---------HHHH
Q 012081 197 NSTL-SGCSMYVDSD-V---SE-------ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--S---------VQKY 253 (471)
Q Consensus 197 ~~lF-~G~~Iyl~~g-f---s~-------~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~--s---------~~k~ 253 (471)
..++ ++..||||.. . +. ..++.|++.+...||+|..= ++.+|||||+..+ . +.++
T Consensus 18 rkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~F--Fd~~VTiIITrR~~~~~~~yp~~DIL~rA 95 (151)
T 3oq0_A 18 GSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRRSVENIYLLKDTDILSRA 95 (151)
T ss_dssp ---CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESS--CCTTCCEEEESSCGGGGGGSCTTSHHHHH
T ss_pred HHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeee--cCCceEEEEeCCcCcccccCCcchHHHHH
Confidence 4567 7889999743 2 21 23456778889999999986 7999999999773 1 2333
Q ss_pred hcCCCceechhHHHHHHhh
Q 012081 254 MGHSNNLVTPVWVLKTAKE 272 (471)
Q Consensus 254 l~~~~~IVs~~WL~dcik~ 272 (471)
...+.+|=+.+=+..-++.
T Consensus 96 r~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 96 KKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHTTCEEEEHHHHHHHHHT
T ss_pred HHcCCeeecHHHHHHHHHh
Confidence 3456777666666555543
No 82
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=87.54 E-value=1.4 Score=39.21 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=54.9
Q ss_pred CCC-CCcEEEEeCC--Ch----------hhHHHHHHHHHHcCCEEcccCCCCceEEEEecCCC--------HHHHHHHhc
Q 012081 56 APF-SGLVICVTGL--SK----------EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKH 114 (471)
Q Consensus 56 ~iF-~GlvI~vTG~--~~----------~er~~L~~lI~~~GG~~~~~l~~~~THLV~~~~~g--------~Ky~~A~k~ 114 (471)
+|+ .+.+|.+-+- .. ..++.|++.+..+||++.+-|+..+||+|+..... +=...|.+.
T Consensus 19 kIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~ 98 (151)
T 3oq0_A 19 SHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN 98 (151)
T ss_dssp --CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHT
T ss_pred HHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHc
Confidence 567 6777777532 21 13466789999999999999999999999987632 234567775
Q ss_pred CCCCCceEecchHHHHHHHc
Q 012081 115 GSRNGLYIVTLGWFVDSVRR 134 (471)
Q Consensus 115 ~~~~gi~IV~p~WI~Dcik~ 134 (471)
+++|-+.+=+..-++.
T Consensus 99 ----~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 99 ----YMKVWSYEKAARFLKN 114 (151)
T ss_dssp ----TCEEEEHHHHHHHHHT
T ss_pred ----CCeeecHHHHHHHHHh
Confidence 8999998888776665
No 83
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=82.20 E-value=1 Score=40.50 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCCC-CcEEEEeCCC----CHH-------HHHHHHHHHHhCCCEEEccccCCCCceEEEEcC
Q 012081 197 NSTLS-GCSMYVDSDV----SEE-------LRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (471)
Q Consensus 197 ~~lF~-G~~Iyl~~gf----s~~-------~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~ 247 (471)
..+|. ++.||||+.- +.. .++.|++.+...||.+..- ++.+|||||+..
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~F--Fd~~VTiVIT~R 116 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRR 116 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESS--CCTTCCEEEESS
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeee--ccCCeEEEEecC
Confidence 35787 8999997432 111 1234557788999999986 799999999976
No 84
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=79.54 E-value=2.9 Score=36.50 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=45.3
Q ss_pred CcEEEEeCC----CCH-------HHHHHHHHHHHhCCCEEEccccCCCCceEEEEcCc--h---------HHHHhcCCCc
Q 012081 202 GCSMYVDSD----VSE-------ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--S---------VQKYMGHSNN 259 (471)
Q Consensus 202 G~~Iyl~~g----fs~-------~~r~~L~~lI~~~GG~v~d~~~~~~~vTHVVv~~~--s---------~~k~l~~~~~ 259 (471)
..+||||+. .+. ..++.|++.+...||+|..= ++.+|||||+..+ . +.++...+.+
T Consensus 7 ~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~F--Fd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mK 84 (134)
T 3oq4_A 7 DSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMK 84 (134)
T ss_dssp TCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESS--CCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCE
T ss_pred cceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeee--cCCceEEEEeCCcCcccccCCcchHHHHHHHcCCe
Confidence 458999753 222 24577888999999999986 7999999999773 1 2233345666
Q ss_pred eechhHHHHHHh
Q 012081 260 LVTPVWVLKTAK 271 (471)
Q Consensus 260 IVs~~WL~dcik 271 (471)
|=+.+=+..-++
T Consensus 85 IWs~EKl~RfL~ 96 (134)
T 3oq4_A 85 VWSYEKAARFLK 96 (134)
T ss_dssp EEEHHHHHHHHH
T ss_pred eeeHHHHHHHHH
Confidence 655555544443
No 85
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=71.34 E-value=3 Score=35.66 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEcc
Q 012081 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQ 233 (471)
Q Consensus 197 ~~lF~G~~Iyl~~gfs~~~r~~L~~lI~~~GG~v~d~ 233 (471)
..+|+|.+|.| ++..+.++|..+|..+||....-
T Consensus 11 ~~LF~GKtFvF---Ln~KQ~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLF---LNAKQYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEE---SCSSTHHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEE---eCHHHHHHHHHHHHhcCceEEec
Confidence 47999999999 78888999999999999997754
No 86
>1q68_A T-cell surface glycoprotein CD4; peptide-peptide complex, helix-helix interaction, zinc coordination, beta hairpin; NMR {Homo sapiens} SCOP: j.48.1.1
Probab=26.29 E-value=26 Score=23.48 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=13.7
Q ss_pred ccccccccc----------CCCCCCCCCCcc
Q 012081 338 RSRRSRRMQ----------TCQTPIRPLTPS 358 (471)
Q Consensus 338 ~~~~~~~~~----------~~~~~~~~~~~~ 358 (471)
|+||+.||. +||-|-|---+-
T Consensus 5 rrr~A~RmsqikrlLsEKKTCqC~~r~qk~~ 35 (38)
T 1q68_A 5 RRRQAERLSQIKRLLSEKKTCQCPHRFQKTC 35 (38)
T ss_dssp CCCSCSHHHHHHHHHHTTCSCCCCCSCCCSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCcHHHhhcc
Confidence 677777874 788766544433
No 87
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=23.28 E-value=42 Score=23.51 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=9.1
Q ss_pred CCCCCCCcccccCC
Q 012081 386 DVNEHHPSVFFDAE 399 (471)
Q Consensus 386 ~~~e~~~~~~~~~~ 399 (471)
+.+|+.-.-||||.
T Consensus 12 ~SdEDed~EfFDA~ 25 (47)
T 2rr3_B 12 MSDEDDENEFFDAP 25 (47)
T ss_dssp SCCCCCSSCCBCCC
T ss_pred cccccccccccccc
Confidence 34455566799993
No 88
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.52 E-value=48 Score=25.36 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=15.1
Q ss_pred cccccccccccc----------CCCCCCCCCC
Q 012081 335 NGVRSRRSRRMQ----------TCQTPIRPLT 356 (471)
Q Consensus 335 ~~v~~~~~~~~~----------~~~~~~~~~~ 356 (471)
--=|+||+.||. |||-|-|=--
T Consensus 34 crhRrrqAeRMSQikrlLsEKKTCQC~hr~qk 65 (70)
T 2klu_A 34 SRHRRRQAERMSQIKRLLSEKKTSQSPHRFQK 65 (70)
T ss_dssp SSCCSSSCTTSSHHHHHHHSSSCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHhh
Confidence 334788899995 7887665433
Done!