BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012082
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPA 291
++ S ++ A+PS+I KKLD+ SN+L +LP +F L L L L+ N+L+TLPA
Sbjct: 21 VDCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 292 -TFGNLINLMNLDLGSNEFTHLPDTIGC---LTSLKTLNVETNELEDLPYTI-GNCSSLT 346
F L NL L + N+ LP IG L +L L ++ N+L+ LP + + + LT
Sbjct: 79 GIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 347 ELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESI 404
L L +N+L++LP+ + KL L+ L L+ N++K +P LT+LK L + N+L+ +
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 405 TE 406
E
Sbjct: 197 PE 198
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 9/149 (6%)
Query: 231 TELNLSENRIMALPSSIAGIKT-LKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKT 288
T ++ R ++P AGI T + L +H NQ+ L P F LINL +L L +N+L
Sbjct: 22 TTVDCRSKRHASVP---AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78
Query: 289 LP-ATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLPYTIGNCSSLT 346
LP F +L L LDLG+N+ T LP + L LK L + N+L +LP I + LT
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138
Query: 347 ELRLDFNQLRALPEAIGKLECLEILTLHY 375
L LD NQL+++P G + L LT Y
Sbjct: 139 HLALDQNQLKSIPH--GAFDRLSSLTHAY 165
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 193 AAVIENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIK 251
+A + +D R K V G + L L +N+I L P +
Sbjct: 10 SAACPSQCSCSGTTVDCRSKRHAS-----VPAGIPTNAQILYLHDNQITKLEPGVFDSLI 64
Query: 252 TLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEF 309
LK+L + SNQL LP F L L LDL N+L LP A F L++L L + N+
Sbjct: 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 310 THLPDTIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQLRALPEAIGKLECL 368
T LP I LT L L ++ N+L+ +P+ SSLT L N EC
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW--------DCECR 176
Query: 369 EILTL 373
+I+ L
Sbjct: 177 DIMYL 181
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 129/257 (50%), Gaps = 33/257 (12%)
Query: 223 SIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSN---------QLINLPD----- 268
++ L + +LN S N++ L +A + TL++LDI SN +L NL
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 269 -------SFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTS 321
G L NL +L L+ N+LK + T +L NL +LDL +N+ ++L G LT
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTK 262
Query: 322 LKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL 381
L L + N++ ++ G ++LT L L+ NQL + I L+ L LTL++N I +
Sbjct: 263 LTELKLGANQISNISPLAG-LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI 320
Query: 382 PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLE 440
+ + +LTKL+ L N++ ++ L ++ L+ G+N +DL L NL +
Sbjct: 321 -SPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPL----ANLTRIT 374
Query: 441 QLDISDDQIRILPDSFR 457
QL ++D P +++
Sbjct: 375 QLGLNDQAWTNAPVNYK 391
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 37/209 (17%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 112
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI 362
L +N+ T + D + LT+L L + +N + D+ A+
Sbjct: 113 TLFNNQITDI-DPLKNLTNLNRLELSSNTISDI------------------------SAL 147
Query: 363 GKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L+ L N++ L + NLT L+ LD+S N++ I+ L +L+ L NN
Sbjct: 148 SGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 205
Query: 423 -FADLRALPRSIGNLEMLEQLDISDDQIR 450
+D+ L G L L++L ++ +Q++
Sbjct: 206 QISDITPL----GILTNLDELSLNGNQLK 230
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 33/257 (12%)
Query: 223 SIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSN---------QLINLPD----- 268
++ L + +L+ S N++ L +A + TL++LDI SN +L NL
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 269 -------SFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTS 321
G L NL +L L+ N+LK + T +L NL +LDL +N+ ++L G LT
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTK 262
Query: 322 LKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL 381
L L + N++ ++ G ++LT L L+ NQL + I L+ L LTL++N I +
Sbjct: 263 LTELKLGANQISNISPLAG-LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI 320
Query: 382 PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLE 440
+ + +LTKL+ L S N++ ++ L ++ L+ G+N +DL L NL +
Sbjct: 321 -SPVSSLTKLQRLFFSNNKVSDVSS-LANLTNINWLSAGHNQISDLTPL----ANLTRIT 374
Query: 441 QLDISDDQIRILPDSFR 457
QL ++D P +++
Sbjct: 375 QLGLNDQAWTNAPVNYK 391
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 37/209 (17%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 112
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI 362
L +N+ T + D + LT+L L + +N + D+ A+
Sbjct: 113 TLFNNQITDI-DPLKNLTNLNRLELSSNTISDI------------------------SAL 147
Query: 363 GKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L+ L+ N++ L + NLT L+ LD+S N++ I+ L +L+ L NN
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 205
Query: 423 -FADLRALPRSIGNLEMLEQLDISDDQIR 450
+D+ L G L L++L ++ +Q++
Sbjct: 206 QISDITPL----GILTNLDELSLNGNQLK 230
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 8/144 (5%)
Query: 246 SIAGIKTL---KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMN 301
S+ GI+ L + L + N+L ++ + +L NL L L N+L++LP F L NL
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 302 LDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQLRALP 359
L L N+ LPD + LT+L LN+ N+L+ LP + + ++LTEL L +NQL++LP
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 360 EAI-GKLECLEILTLHYNRIKGLP 382
E + KL L+ L L+ N++K +P
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVP 197
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 95/172 (55%), Gaps = 8/172 (4%)
Query: 296 LINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQ 354
L N+ L LG N+ H + LT+L L + N+L+ LP + + ++L EL L NQ
Sbjct: 62 LPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 355 LRALPEAI-GKLECLEILTLHYNRIKGLPTTIGN-LTKLKELDVSFNELESITENLCFAV 412
L++LP+ + KL L L L +N+++ LP + + LT L ELD+S+N+L+S+ E + +
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 413 S-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDSFRLLSKL 462
+ LK L + N L+++P + + L L+ + + D+ R LS+
Sbjct: 181 TQLKDLRLYQN--QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 185 EKLSLMKMAAVIENSAKT-GAVVLDLRGKLT------DQIEWLPVSI-GKLKDVTELNLS 236
+KL+ +K ++EN ++ V D LT +Q++ LP + KL ++TEL+LS
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 237 ENRIMALPSSIAG-IKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHAN 284
N++ +LP + + LK L ++ NQL ++PD F L +L + LH N
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 33/257 (12%)
Query: 223 SIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSN---------QLINLPD----- 268
++ L + +L+ S N++ L +A + TL++LDI SN +L NL
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 269 -------SFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTS 321
G L NL +L L+ N+LK + T +L NL +LDL +N+ ++L G LT
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTK 262
Query: 322 LKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL 381
L L + N++ ++ G ++LT L L+ NQL + I L+ L LTL++N I +
Sbjct: 263 LTELKLGANQISNISPLAG-LTALTNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI 320
Query: 382 PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLE 440
+ + +LTKL+ L N++ ++ L ++ L+ G+N +DL L NL +
Sbjct: 321 -SPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPL----ANLTRIT 374
Query: 441 QLDISDDQIRILPDSFR 457
QL ++D P +++
Sbjct: 375 QLGLNDQAWTNAPVNYK 391
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 37/209 (17%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 112
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI 362
L +N+ T + D + LT+L L + +N + D+ A+
Sbjct: 113 TLFNNQITDI-DPLKNLTNLNRLELSSNTISDI------------------------SAL 147
Query: 363 GKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L+ L+ N++ L + NLT L+ LD+S N++ I+ L +L+ L NN
Sbjct: 148 SGLTSLQQLSFSSNQVTDLKP-LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNN 205
Query: 423 -FADLRALPRSIGNLEMLEQLDISDDQIR 450
+D+ L G L L++L ++ +Q++
Sbjct: 206 QISDITPL----GILTNLDELSLNGNQLK 230
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 32/233 (13%)
Query: 247 IAGIKTLKKLDIHSN---------QLINLPD------------SFGDLINLIDLDLHANR 285
+A + TL++LDI SN +L NL G L NL +L L+ N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
LK + T +L NL +LDL +N+ ++L G LT L L + N++ ++ G ++L
Sbjct: 228 LKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAG-LTAL 284
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
T L L+ NQL + I L+ L LTL++N I + + + +LTKL+ L S N++ ++
Sbjct: 285 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFSNNKVSDVS 342
Query: 406 ENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFR 457
L ++ L+ G+N +DL L NL + QL ++D P +++
Sbjct: 343 S-LANLTNINWLSAGHNQISDLTPL----ANLTRITQLGLNDQAWTNAPVNYK 390
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 42/211 (19%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 112
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR-LDF-NQLRALPE 360
L +N+ T + D + LT+L L + +N + D I S LT L+ L+F NQ+ L
Sbjct: 113 TLFNNQITDI-DPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFGNQVTDLKP 167
Query: 361 AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVG 420
+ NLT L+ LD+S N++ I+ L +L+ L
Sbjct: 168 ------------------------LANLTTLERLDISSNKVSDISV-LAKLTNLESLIAT 202
Query: 421 NN-FADLRALPRSIGNLEMLEQLDISDDQIR 450
NN +D+ L G L L++L ++ +Q++
Sbjct: 203 NNQISDITPL----GILTNLDELSLNGNQLK 229
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 32/233 (13%)
Query: 247 IAGIKTLKKLDIHSN---------QLINLPD------------SFGDLINLIDLDLHANR 285
+A + TL++LDI SN +L NL G L NL +L L+ N+
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 231
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
LK + T +L NL +LDL +N+ ++L G LT L L + N++ ++ G ++L
Sbjct: 232 LKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAG-LTAL 288
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
T L L+ NQL + I L+ L LTL++N I + + + +LTKL+ L + N++ ++
Sbjct: 289 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS 346
Query: 406 ENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFR 457
L ++ L+ G+N +DL L NL + QL ++D P +++
Sbjct: 347 S-LANLTNINWLSAGHNQISDLTPL----ANLTRITQLGLNDQAWTNAPVNYK 394
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283
+G L ++ EL+L+ N++ + ++A + L LD+ +NQ+ NL
Sbjct: 216 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL----------------- 257
Query: 284 NRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCS 343
A L L L LG+N+ +++ G LT+L L + N+LED+ I N
Sbjct: 258 -------APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDI-SPISNLK 308
Query: 344 SLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELES 403
+LT L L FN + + + L L+ L N++ + +++ NLT + L N++
Sbjct: 309 NLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISD 366
Query: 404 IT 405
+T
Sbjct: 367 LT 368
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 42/211 (19%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 59 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 116
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR-LDF-NQLRALPE 360
L +N+ T + D + LT+L L + +N + D I S LT L+ L F NQ+ L
Sbjct: 117 TLFNNQITDI-DPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQVTDLKP 171
Query: 361 AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVG 420
+ NLT L+ LD+S N++ I+ L +L+ L
Sbjct: 172 ------------------------LANLTTLERLDISSNKVSDISV-LAKLTNLESLIAT 206
Query: 421 NN-FADLRALPRSIGNLEMLEQLDISDDQIR 450
NN +D+ L G L L++L ++ +Q++
Sbjct: 207 NNQISDITPL----GILTNLDELSLNGNQLK 233
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283
+ L +TEL L N+I + S +AG+ L L+++ NQL ++ +L NL L L+
Sbjct: 260 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYF 317
Query: 284 NRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCS 343
N + + + +L L L +N+ + + ++ LT++ L+ N++ DL + N +
Sbjct: 318 NNISDI-SPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLT 374
Query: 344 SLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL--PTTIGNLTKLKELDVSFNEL 401
+T+L L+ P + + I N L P TI + E D+++N L
Sbjct: 375 RITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN-L 431
Query: 402 ESITENLCFAVS 413
S T + + S
Sbjct: 432 PSYTNEVSYTFS 443
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Query: 242 ALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHANRLKTLP-ATFGNLINL 299
++P+ I T LD+ +N L +LP+ F +L +L L L N+L++LP F L +L
Sbjct: 21 SVPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78
Query: 300 MNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQLRA 357
L+L +N+ LP+ + LT LK L + TN+L+ LP + + + L +LRL NQL++
Sbjct: 79 TYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
Query: 358 LPEAI-GKLECLEILTLHYN 376
+P+ + +L L+ + LH N
Sbjct: 139 VPDGVFDRLTSLQYIWLHDN 158
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 4/108 (3%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLP 336
LDL N LK+LP F L +L L LG N+ LP+ + LTSL LN+ TN+L+ LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 337 YTIGN-CSSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLP 382
+ + + L EL L+ NQL++LP+ + KL L+ L L+ N++K +P
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 226 KLKDVTELNLSENRIMALPSSIAG-IKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHA 283
KL +T LNLS N++ +LP+ + + LK+L +++NQL +LPD F L L DL L+
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133
Query: 284 NRLKTLP-ATFGNLINLMNLDLGSNEF 309
N+LK++P F L +L + L N +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 82/143 (57%), Gaps = 7/143 (4%)
Query: 325 LNVETNELEDLPYTIGN-CSSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLP 382
L++ETN L+ LP + + +SLT+L L N+L++LP + KL L L L N+++ LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 383 TTIGN-LTKLKELDVSFNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEML 439
+ + LT+LKEL ++ N+L+S+ + + ++ LK L + N L+++P + + L L
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN--QLKSVPDGVFDRLTSL 150
Query: 440 EQLDISDDQIRILPDSFRLLSKL 462
+ + + D+ R LS+
Sbjct: 151 QYIWLHDNPWDCTCPGIRYLSEW 173
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 5/125 (4%)
Query: 214 TDQIEWLPVSI-GKLKDVTELNLSENRIMALPSSIAG-IKTLKKLDIHSNQLINLPDS-F 270
T+ ++ LP + +L +T+L L N++ +LP+ + + +L L++ +NQL +LP+ F
Sbjct: 37 TNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96
Query: 271 GDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVE 328
L L +L L+ N+L++LP F L L +L L N+ +PD + LTSL+ + +
Sbjct: 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 329 TNELE 333
N +
Sbjct: 157 DNPWD 161
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 32/233 (13%)
Query: 247 IAGIKTLKKLDIHSN---------QLINLPD------------SFGDLINLIDLDLHANR 285
+A + TL++LDI SN +L NL G L NL +L L+ N+
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 232
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
LK + T +L NL +LDL +N+ ++L G LT L L + N++ ++ G ++L
Sbjct: 233 LKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAG-LTAL 289
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
T L L+ NQL + I L+ L LTL++N I + + + +LTKL+ L N++ ++
Sbjct: 290 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS 347
Query: 406 ENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFR 457
L ++ L+ G+N +DL L NL + QL ++D P +++
Sbjct: 348 S-LANLTNINWLSAGHNQISDLTPL----ANLTRITQLGLNDQAWTNAPVNYK 395
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 29/182 (15%)
Query: 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283
+G L ++ EL+L+ N++ + ++A + L LD+ +NQ+ NL
Sbjct: 217 LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL----------------- 258
Query: 284 NRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCS 343
A L L L LG+N+ +++ G LT+L L + N+LED+ I N
Sbjct: 259 -------APLSGLTKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDI-SPISNLK 309
Query: 344 SLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELES 403
+LT L L FN + + + L L+ L + N++ + +++ NLT + L N++
Sbjct: 310 NLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISD 367
Query: 404 IT 405
+T
Sbjct: 368 LT 369
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 42/211 (19%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 117
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR-LDF-NQLRALPE 360
L +N+ T + D + LT+L L + +N + D I S LT L+ L F NQ+ L
Sbjct: 118 TLFNNQITDI-DPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLSFGNQVTDLKP 172
Query: 361 AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVG 420
+ NLT L+ LD+S N++ I+ L +L+ L
Sbjct: 173 ------------------------LANLTTLERLDISSNKVSDISV-LAKLTNLESLIAT 207
Query: 421 NN-FADLRALPRSIGNLEMLEQLDISDDQIR 450
NN +D+ L G L L++L ++ +Q++
Sbjct: 208 NNQISDITPL----GILTNLDELSLNGNQLK 234
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283
+ L +TEL L N+I + S +AG+ L L+++ NQL ++ +L NL L L+
Sbjct: 261 LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDI-SPISNLKNLTYLTLYF 318
Query: 284 NRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCS 343
N + + + +L L L +N+ + + ++ LT++ L+ N++ DL + N +
Sbjct: 319 NNISDI-SPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLT 375
Query: 344 SLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL--PTTIGNLTKLKELDVSFNEL 401
+T+L L+ P + + I N L P TI + E D+++N L
Sbjct: 376 RITQLGLNDQAWTNAP--VNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWN-L 432
Query: 402 ESITENLCFAVS 413
S T + + S
Sbjct: 433 PSYTNEVSYTFS 444
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 32/233 (13%)
Query: 247 IAGIKTLKKLDIHSN---------QLINLPD------------SFGDLINLIDLDLHANR 285
+A + TL++LDI SN +L NL G L NL +L L+ N+
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ 227
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
LK + T +L NL +LDL +N+ ++L G LT L L + N++ ++ G ++L
Sbjct: 228 LKDI-GTLASLTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQISNISPLAG-LTAL 284
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
T L L+ NQL + I L+ L LTL++N I + + + +LTKL+ L N++ ++
Sbjct: 285 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS 342
Query: 406 ENLCFAVSLKKLNVGNN-FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFR 457
L ++ L+ G+N +DL L NL + QL ++D P +++
Sbjct: 343 S-LANLTNINWLSAGHNQISDLTPL----ANLTRITQLGLNDQAWTNAPVNYK 390
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 42/211 (19%)
Query: 246 SIAGIKTLKKL---DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302
SI G++ L L + +NQL ++ +L L+D+ ++ N++ + NL NL L
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADI-TPLANLTNLTGL 112
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR-LDF-NQLRALPE 360
L +N+ T + D + LT+L L + +N + D I S LT L+ L+F NQ+ L
Sbjct: 113 TLFNNQITDI-DPLKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFGNQVTDLKP 167
Query: 361 AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVG 420
+ NLT L+ LD+S N++ I+ L +L+ L
Sbjct: 168 ------------------------LANLTTLERLDISSNKVSDISV-LAKLTNLESLIAT 202
Query: 421 NN-FADLRALPRSIGNLEMLEQLDISDDQIR 450
NN +D+ L G L L++L ++ +Q++
Sbjct: 203 NNQISDITPL----GILTNLDELSLNGNQLK 229
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 232 ELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHANRLKTLP 290
E++ + ++PS I +KLD+ S L L D+ F L L L+L N+L+TL
Sbjct: 18 EVDCQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 291 A-TFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYTIGN-CSSLTE 347
A F +L L L L +N+ LP LT L L + N+L+ LP + + + L E
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 348 LRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLP 382
LRL+ NQL+++P A KL L+ L+L N+++ +P
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 278 DLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDLP 336
++D L ++P+ G + LDL S L D T LT L LN++ N+L+ L
Sbjct: 18 EVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 337 YTI-GNCSSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLPTTIGN-LTKLKE 393
+ + + L L L NQL +LP + L L+ L L N++K LP+ + + LTKLKE
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 394 LDVSFNELESI 404
L ++ N+L+SI
Sbjct: 136 LRLNTNQLQSI 146
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 384 TIGNLTKLKELDVSFNELESITENLCFAVS-LKKLNVGNNFADLRALPRSI-GNLEMLEQ 441
T LTKL L++ +N+L++++ + ++ L L + NN L +LP + +L L++
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN--QLASLPLGVFDHLTQLDK 111
Query: 442 LDISDDQIRILPDS-FRLLSKLRVFR 466
L + +Q++ LP F L+KL+ R
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 7/156 (4%)
Query: 232 ELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHANRLKTLP 290
E++ + ++PS I +KLD+ S L L D+ F L L L+L N+L+TL
Sbjct: 18 EVDCQGKSLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 291 A-TFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYTIGN-CSSLTE 347
A F +L L L L +N+ LP LT L L + N+L+ LP + + + L E
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 348 LRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLP 382
LRL+ NQL+++P A KL L+ L+L N+++ +P
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 278 DLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDLP 336
++D L ++P+ G + LDL S L D T LT L LN++ N+L+ L
Sbjct: 18 EVDCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 337 YTI-GNCSSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLPTTIGN-LTKLKE 393
+ + + L L L NQL +LP + L L+ L L N++K LP+ + + LTKLKE
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 394 LDVSFNELESI 404
L ++ N+L+SI
Sbjct: 136 LRLNTNQLQSI 146
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 384 TIGNLTKLKELDVSFNELESITENLCFAVS-LKKLNVGNNFADLRALPRSI-GNLEMLEQ 441
T LTKL L++ +N+L++++ + ++ L L + NN L +LP + +L L++
Sbjct: 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN--QLASLPLGVFDHLTQLDK 111
Query: 442 LDISDDQIRILPDS-FRLLSKLRVFR 466
L + +Q++ LP F L+KL+ R
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 84/144 (58%), Gaps = 8/144 (5%)
Query: 246 SIAGIKTL---KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMN 301
S+ GI+ L + L + N+L ++ + +L NL L L N+L++LP F L NL
Sbjct: 55 SVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 302 LDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQLRALP 359
L L N+ LPD + LT+L L + N+L+ LP + + ++LT L LD NQL++LP
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 360 EAI-GKLECLEILTLHYNRIKGLP 382
E + KL L+ L+L+ N++K +P
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 30/175 (17%)
Query: 296 LINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQ 354
L N+ L LG N+ H + LT+L L + N+L+ LP + + ++L EL L NQ
Sbjct: 62 LPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 355 LRALPEAI-GKLECLEILTLHYNRIKGLPTTIGN-LTKLKELDVSFNELESITENLCFAV 412
L++LP+ + KL L L L++N+++ LP + + LT L LD+ N+L+S+ E +
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGV---- 176
Query: 413 SLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSF--RLLSKLRVF 465
L L+QL ++D+Q++ +PD RL S ++
Sbjct: 177 --------------------FDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIW 211
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 215 DQIEWLPVSI-GKLKDVTELNLSENRIMALPSSIAG-IKTLKKLDIHSNQLINLPDS-FG 271
+Q++ LP + KL ++ EL L EN++ +LP + + L L ++ NQL +LP F
Sbjct: 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFD 154
Query: 272 DLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTI 316
L NL LDL N+L++LP F L L L L N+ +PD +
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGV 200
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 12/200 (6%)
Query: 256 LDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDT 315
L++ S L PD L +L + A L LP T L L L N LP +
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 316 IGCLTSLKTLNVET-NELEDLPYTIGNCSS---------LTELRLDFNQLRALPEAIGKL 365
I L L+ L++ EL +LP + + + L LRL++ +R+LP +I L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 366 ECLEILTLHYNRIKGLPTTIGNLTKLKELDV-SFNELESITENLCFAVSLKKLNVGNNFA 424
+ L+ L + + + L I +L KL+ELD+ L + LK+L + + +
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL-ILKDCS 264
Query: 425 DLRALPRSIGNLEMLEQLDI 444
+L LP I L LE+LD+
Sbjct: 265 NLLTLPLDIHRLTQLEKLDL 284
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 32/218 (14%)
Query: 188 SLMKMAAVIENSAKTGAVVLDLRG----KLTDQ----------------IEWLPVSIGKL 227
+L A ++E++ + G V L+LR + DQ + LP + +
Sbjct: 67 ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQF 126
Query: 228 KDVTELNLSENRIMALPSSIAGIKTLKKLDIHS-NQLINLP------DSFGD---LINLI 277
+ L L+ N + ALP+SIA + L++L I + +L LP D+ G+ L+NL
Sbjct: 127 AGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186
Query: 278 DLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVE-TNELEDLP 336
L L +++LPA+ NL NL +L + ++ + L I L L+ L++ L + P
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
Query: 337 YTIGNCSSLTELRL-DFNQLRALPEAIGKLECLEILTL 373
G + L L L D + L LP I +L LE L L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 324 TLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPT 383
L + + L P S L +D L LP+ + LE LTL N ++ LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPA 144
Query: 384 TIGNLTKLKELDV-SFNELESITENLCFA---------VSLKKLNVGNNFADLRALPRSI 433
+I +L +L+EL + + EL + E L V+L+ L + + +R+LP SI
Sbjct: 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--EWTGIRSLPASI 202
Query: 434 GNLEMLEQLDISDDQIRILPDSFRLLSKL 462
NL+ L+ L I + + L + L KL
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKL 231
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 38/266 (14%)
Query: 221 PVSIGKLKDVTELNLSENRIMA-LPSSIAG-IKTLKKLDIHSNQLIN-LPDSFG------ 271
P+ LK + L+L+EN+ +P ++G TL LD+ N +P FG
Sbjct: 262 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 272 -------------------DLINLIDLDLHANRLKT-LPATFGNL-INLMNLDLGSNEFT 310
+ L LDL N LP + NL +L+ LDL SN F+
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 311 H--LPDTI-GCLTSLKTLNVETNELED-LPYTIGNCSSLTELRLDFNQLRA-LPEAIGKL 365
LP+ +L+ L ++ N +P T+ NCS L L L FN L +P ++G L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 366 ECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELES-ITENLCFAVSLKKLNVGNNF 423
L L L N ++G +P + + L+ L + FN+L I L +L +++ NN
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 424 ADLRALPRSIGNLEMLEQLDISDDQI 449
+P+ IG LE L L +S++
Sbjct: 502 LT-GEIPKWIGRLENLAILKLSNNSF 526
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 113/282 (40%), Gaps = 73/282 (25%)
Query: 205 VVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA-LPSSIAGIKTLKKLDIHSNQL 263
++LD LT +I P + ++ ++LS NR+ +P I ++ L L + +N
Sbjct: 471 LILDFN-DLTGEI---PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 264 I-NLPDSFGDLINLIDLDLHANRLK-TLPATF---------------------------- 293
N+P GD +LI LDL+ N T+PA
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 294 ----GNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR 349
GNL+ + S + L C + + T+ T N S+ L
Sbjct: 587 CHGAGNLLEFQGIR--SEQLNRLSTRNPCNITSRVYGGHTSP------TFDNNGSMMFLD 638
Query: 350 LDFNQLRA-LPEAIGKLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELESITEN 407
+ +N L +P+ IG + L IL L +N I G +P +G+L L LD+S N+L+
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG---- 694
Query: 408 LCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQI 449
+P+++ L ML ++D+S++ +
Sbjct: 695 --------------------RIPQAMSALTMLTEIDLSNNNL 716
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 207 LDL-RGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAG---IKTLKKLDIHSNQ 262
LDL R L+ + L S+G + LN+S N + P ++G + +L+ LD+ +N
Sbjct: 105 LDLSRNSLSGPVTTL-TSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 263 LIN-------LPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDT 315
+ L D G+L +L + N++ +NL LD+ SN F+
Sbjct: 163 ISGANVVGWVLSDGCGELKHLA---ISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPF 218
Query: 316 IGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLH 374
+G ++L+ L++ N+L D I C+ L L + NQ P L+ L+ L+L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLA 277
Query: 375 YNRIKG-LPTTI-GNLTKLKELDVSFNEL 401
N+ G +P + G L LD+S N
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 279 LDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNELED-L 335
LD+ N L +P G++ L L+LG N+ + +PD +G L L L++ +N+L+ +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 336 PYTIGNCSSLTELRLDFNQLRALPEAIGKLE 366
P + + LTE+ L N L +G+ E
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 727
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 233 LNLSENRIMA-LPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLIDLDLHANRLKT-L 289
L++S N + +P I + L L++ N + ++PD GDL L LDL +N+L +
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 290 PATFGNLINLMNLDLGSNEFT 310
P L L +DL +N +
Sbjct: 697 PQAMSALTMLTEIDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 118/266 (44%), Gaps = 38/266 (14%)
Query: 221 PVSIGKLKDVTELNLSENRIMA-LPSSIAG-IKTLKKLDIHSNQLIN-LPDSFG------ 271
P+ LK + L+L+EN+ +P ++G TL LD+ N +P FG
Sbjct: 259 PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 272 -------------------DLINLIDLDLHANRLKT-LPATFGNL-INLMNLDLGSNEFT 310
+ L LDL N LP + NL +L+ LDL SN F+
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 311 H--LPDTI-GCLTSLKTLNVETNELED-LPYTIGNCSSLTELRLDFNQLRA-LPEAIGKL 365
LP+ +L+ L ++ N +P T+ NCS L L L FN L +P ++G L
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 366 ECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELES-ITENLCFAVSLKKLNVGNNF 423
L L L N ++G +P + + L+ L + FN+L I L +L +++ NN
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 424 ADLRALPRSIGNLEMLEQLDISDDQI 449
+P+ IG LE L L +S++
Sbjct: 499 LT-GEIPKWIGRLENLAILKLSNNSF 523
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 113/282 (40%), Gaps = 73/282 (25%)
Query: 205 VVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA-LPSSIAGIKTLKKLDIHSNQL 263
++LD LT +I P + ++ ++LS NR+ +P I ++ L L + +N
Sbjct: 468 LILDFN-DLTGEI---PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 264 I-NLPDSFGDLINLIDLDLHANRLK-TLPATF---------------------------- 293
N+P GD +LI LDL+ N T+PA
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 294 ----GNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR 349
GNL+ + S + L C + + T+ T N S+ L
Sbjct: 584 CHGAGNLLEFQGIR--SEQLNRLSTRNPCNITSRVYGGHTSP------TFDNNGSMMFLD 635
Query: 350 LDFNQLRA-LPEAIGKLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELESITEN 407
+ +N L +P+ IG + L IL L +N I G +P +G+L L LD+S N+L+
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG---- 691
Query: 408 LCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQI 449
+P+++ L ML ++D+S++ +
Sbjct: 692 --------------------RIPQAMSALTMLTEIDLSNNNL 713
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 207 LDL-RGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAG---IKTLKKLDIHSNQ 262
LDL R L+ + L S+G + LN+S N + P ++G + +L+ LD+ +N
Sbjct: 102 LDLSRNSLSGPVTTL-TSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANS 159
Query: 263 LIN-------LPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDT 315
+ L D G+L +L + N++ +NL LD+ SN F+
Sbjct: 160 ISGANVVGWVLSDGCGELKHLA---ISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPF 215
Query: 316 IGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLH 374
+G ++L+ L++ N+L D I C+ L L + NQ P L+ L+ L+L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLA 274
Query: 375 YNRIKG-LPTTI-GNLTKLKELDVSFNEL 401
N+ G +P + G L LD+S N
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 279 LDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNELED-L 335
LD+ N L +P G++ L L+LG N+ + +PD +G L L L++ +N+L+ +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 336 PYTIGNCSSLTELRLDFNQLRALPEAIGKLE 366
P + + LTE+ L N L +G+ E
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFE 724
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 124/278 (44%), Gaps = 23/278 (8%)
Query: 186 KLSLMKMAAVIENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA-LP 244
LS ++ I +S + + + DL+ L +P + +K + L L N + +P
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Query: 245 SSIAGIKTLKKLDIHSNQLIN-LPDSFGDLINLIDLDLHANRLK-TLPATFGNLINLMNL 302
S ++ L + + +N+L +P G L NL L L N +PA G+ +L+ L
Sbjct: 481 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 540
Query: 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYT-IGN------CSSLTELRLDFNQL 355
DL +N F TI ++ + N + Y I N C L L+F +
Sbjct: 541 DLNTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL-LEFQGI 596
Query: 356 RALPEAIGKLECLEILTLHYNRIKGLPT--TIGNLTKLKELDVSFNELES-ITENLCFAV 412
R+ E + +L + +R+ G T T N + LD+S+N L I + +
Sbjct: 597 RS--EQLNRLSTRNPCNIT-SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 413 SLKKLNVGNNFADLR-ALPRSIGNLEMLEQLDISDDQI 449
L LN+G+N D+ ++P +G+L L LD+S +++
Sbjct: 654 YLFILNLGHN--DISGSIPDEVGDLRGLNILDLSSNKL 689
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 233 LNLSENRIMA-LPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLIDLDLHANRLKT-L 289
L++S N + +P I + L L++ N + ++PD GDL L LDL +N+L +
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 290 PATFGNLINLMNLDLGSNEFT 310
P L L +DL +N +
Sbjct: 694 PQAMSALTMLTEIDLSNNNLS 714
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 133/315 (42%), Gaps = 59/315 (18%)
Query: 166 DLVKSASKKGSFFIGEENTEKLSLM-KMAAVIENSAKTGAVVLDL-RGKLTDQIEWLPVS 223
D V SA ++ + EE+ + +++ KM A + N G VL++ LT + LP
Sbjct: 9 DAVWSAWRRAA--PAEESRGRAAVVQKMRACLNN----GNAVLNVGESGLTTLPDCLPAH 62
Query: 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283
I T L + +N + +LP A L+ L++ NQL +LP L++L + +
Sbjct: 63 I------TTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPP---GLLELSIFS 110
Query: 284 NRLKTLPA---------TFGNLI--------NLMNLDLGSNEFTHLPDTIGCLTSLKTLN 326
N L LPA FGN + L L + N+ LP L L N
Sbjct: 111 NPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN 170
Query: 327 VETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIG 386
+ L LP S L EL + NQL +LP +L L + NR+ LP
Sbjct: 171 NQLTSLPMLP------SGLQELSVSDNQLASLPTLPSELYKLWA---YNNRLTSLPALP- 220
Query: 387 NLTKLKELDVSFNELESITENLCFAVSLKKLNV-GNNFADLRALPRSIGNLEMLEQLDIS 445
+ LKEL VS N L S+ LK+L V GN L LP L L +
Sbjct: 221 --SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPMLPSG------LLSLSVY 269
Query: 446 DDQIRILPDSFRLLS 460
+Q+ LP+S LS
Sbjct: 270 RNQLTRLPESLIHLS 284
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLI 274
+Q+ LP +L + N NR+ +LP+ +G LK+L + N+L +LP +L
Sbjct: 191 NQLASLPTLPSELYKLWAYN---NRLTSLPALPSG---LKELIVSGNRLTSLPVLPSELK 244
Query: 275 NLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELED 334
L+ + NRL +LP L ++L + N+ T LP+++ L+S T+N+E N L +
Sbjct: 245 ELM---VSGNRLTSLPMLPSGL---LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 232 ELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPA 291
EL++S+N++ +LP+ + L KL ++N+L +LP L LI + NRL +LP
Sbjct: 185 ELSVSDNQLASLPTLPS---ELYKLWAYNNRLTSLPALPSGLKELI---VSGNRLTSLPV 238
Query: 292 TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLD 351
L LM + N T LP L S L+V N+L LP ++ + SS T + L+
Sbjct: 239 LPSELKELM---VSGNRLTSLPMLPSGLLS---LSVYRNQLTRLPESLIHLSSETTVNLE 292
Query: 352 FNQL 355
N L
Sbjct: 293 GNPL 296
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 21/185 (11%)
Query: 238 NRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLI 297
N++ +LP G L++L + NQL +LP +L L + L LP+
Sbjct: 131 NQLTSLPVLPPG---LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS------ 181
Query: 298 NLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRA 357
L L + N+ LP L L N L LP S L EL + N+L +
Sbjct: 182 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLTS 235
Query: 358 LPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKL 417
LP +L+ L + NR+ LP L L V N+L + E+L S +
Sbjct: 236 LPVLPSELKELMV---SGNRLTSLPMLPSGLLS---LSVYRNQLTRLPESLIHLSSETTV 289
Query: 418 NVGNN 422
N+ N
Sbjct: 290 NLEGN 294
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 76/131 (58%), Gaps = 9/131 (6%)
Query: 306 SNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTI-GNCSSLTELRLDFNQLRALPEAI-G 363
S T +P G +S L +E+N+L+ LP+ + + LT+L L NQ+++LP+ +
Sbjct: 16 SKGLTSVP--TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD 73
Query: 364 KLECLEILTLHYNRIKGLPTTI-GNLTKLKELDVSFNELESITENLCF--AVSLKKLNVG 420
KL L IL LH N+++ LP + LT+LKEL + N+L+S+ + + F SL+K+ +
Sbjct: 74 KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLH 132
Query: 421 NNFADLRALPR 431
N D + PR
Sbjct: 133 TNPWDC-SCPR 142
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 214 TDQIEWLPVSI-GKLKDVTELNLSENRIMALPSSI-AGIKTLKKLDIHSNQLINLPDS-F 270
+++++ LP + KL +T+L+LS+N+I +LP + + L L +H N+L +LP+ F
Sbjct: 37 SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96
Query: 271 GDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEF 309
L L +L L N+LK++P F L +L + L +N +
Sbjct: 97 DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 51/101 (50%)
Query: 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
L+LS +I + ++I L +L ++ N L LP +L NL LDL NRL +LPA
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 293 FGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELE 333
G+ L N T LP G L +L+ L VE N LE
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 54/119 (45%)
Query: 237 ENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNL 296
ENR++ S + LD+ + Q+ N+ + L L L+ N L LPA NL
Sbjct: 210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNL 269
Query: 297 INLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQL 355
NL LDL N T LP +G LK N + LP+ GN +L L ++ N L
Sbjct: 270 SNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%)
Query: 216 QIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLIN 275
QI + +I K +T L L+ N + LP+ I + L+ LD+ N+L +LP G
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 276 LIDLDLHANRLKTLPATFGNLINLMNLDLGSN 307
L N + TLP FGNL NL L + N
Sbjct: 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 47/101 (46%)
Query: 302 LDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEA 361
LDL + + ++ I L L + N L +LP I N S+L L L N+L +LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 362 IGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE 402
+G L+ N + LP GNL L+ L V N LE
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%)
Query: 220 LPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279
LP I L ++ L+LS NR+ +LP+ + LK N + LP FG+L NL L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Query: 280 DLHANRLK 287
+ N L+
Sbjct: 322 GVEGNPLE 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 299 LMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRAL 358
L L L N T LP I L++L+ L++ N L LP +G+C L N + L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 359 PEAIGKLECLEILTLHYNRIK 379
P G L L+ L + N ++
Sbjct: 309 PWEFGNLCNLQFLGVEGNPLE 329
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 354 QLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVS 413
Q+ + I K + L L L+ N + LP I NL+ L+ LD+S N L S+ L
Sbjct: 235 QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 414 LKKLNVGNNFADLRALPRSIGNLEMLEQLDI 444
LK +N + LP GNL L+ L +
Sbjct: 295 LKYFYFFDNM--VTTLPWEFGNLCNLQFLGV 323
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 211 GKLTDQIEWLPVSIGKLKDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSNQLIN-LPD 268
G + + + +P +I KL + L ++ + A+P ++ IKTL LD N L LP
Sbjct: 84 GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 269 SFGDLINLIDLDLHANRLK-TLPATFGNLINLM-NLDLGSNEFT-HLPDTIGCLTSLKTL 325
S L NL+ + NR+ +P ++G+ L ++ + N T +P T L +L +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202
Query: 326 NVETNELE-DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKG-LPT 383
++ N LE D G+ + ++ L N L +G + L L L NRI G LP
Sbjct: 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262
Query: 384 TIGNLTKLKELDVSFNEL 401
+ L L L+VSFN L
Sbjct: 263 GLTQLKFLHSLNVSFNNL 280
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 21/186 (11%)
Query: 227 LKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRL 286
+ +EL L+ + +LP ++ T+ L+I N LI+LP+ L L D NRL
Sbjct: 58 INQFSELQLNRLNLSSLPDNLPPQITV--LEITQNALISLPELPASLEYLDACD---NRL 112
Query: 287 KTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLT 346
TLP +L +LD+ +N+ T LP+ L+ +N + N+L LP +SL
Sbjct: 113 STLPELPASL---KHLDVDNNQLTXLPELPAL---LEYINADNNQLTXLPEL---PTSLE 163
Query: 347 ELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSF----NELE 402
L + NQL LPE LE L++ T N ++ LP +E ++ F N +
Sbjct: 164 VLSVRNNQLTFLPELPESLEALDVST---NLLESLPAVPVRNHHSEETEIFFRCRENRIT 220
Query: 403 SITENL 408
I EN+
Sbjct: 221 HIPENI 226
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 221 PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLID 278
P + L + L+L + L P G+ L+ L + N L LPD +F DL NL
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLP 336
L LH NR+ ++P F L +L L L N H+ P L L TL + N L LP
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 337 Y-TIGNCSSLTELRLDFN 353
+ +L LRL+ N
Sbjct: 217 TEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 221 PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLID 278
P + L + L+L + L P G+ L+ L + N L LPD +F DL NL
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLP 336
L LH NR+ ++P F L +L L L N H+ P L L TL + N L LP
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 337 Y-TIGNCSSLTELRLDFN 353
+ +L LRL+ N
Sbjct: 218 TEALAPLRALQYLRLNDN 235
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHA 283
G +DVTEL L N+ +P ++ K L +D+ +N++ L + SF ++ L+ L L
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 284 NRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNEL 332
NRL+ +P TF L +L L L N+ + +P+ L++L L + N L
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 26/120 (21%)
Query: 345 LTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFNELES 403
+TEL LD NQ +P+ + + L ++ L NRI L + N+T+L L +S+N L
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 404 ITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPD-SFRLLSKL 462
I PR+ L+ L L + + I ++P+ +F LS L
Sbjct: 93 IP------------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 98/200 (49%), Gaps = 28/200 (14%)
Query: 232 ELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHAN--RLKT 288
EL+L+ + LPS + G+ TLKKL + +N+ NL S + +L L + N RL+
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341
Query: 289 LPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTEL 348
NL NL LDL ++ +ET++ +L + N S L L
Sbjct: 342 GTGCLENLENLRELDLSHDD------------------IETSDCCNL--QLRNLSHLQSL 381
Query: 349 RLDFNQLRAL-PEAIGKLECLEILTLHYNR--IKGLPTTIGNLTKLKELDVSFNELESIT 405
L +N+ +L EA + LE+L L + R +K + NL LK L++S + L+ +
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441
Query: 406 ENLCFAV-SLKKLNV-GNNF 423
E L + +L+ LN+ GN+F
Sbjct: 442 EQLFDGLPALQHLNLQGNHF 461
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 292 TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRL 350
TF L LDL + + LP + L++LK L + N+ E+L + N SLT L +
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 351 DFNQLRALPEAIGKLECLEILT---LHYNRIKGLPTT---IGNLTKLKELDVSFNELESI 404
N R L G LE LE L L ++ I+ + NL+ L+ L++S+NE S+
Sbjct: 333 KGNTKR-LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 405 -TENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRI 451
TE L+ L++ ++ NL +L+ L++S + I
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 229 DVTELNLSENRIMALPSSIAGIKT-LKKLDIHSNQLINLP--------DSFGDLINLIDL 279
+V+ +NLS N+I P + + L +++ N L +P ++F + L +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 280 DLHANRLKTLPATF--GNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNE------ 331
DL N+L L F L L+ +DL N F+ P ++LK +
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553
Query: 332 -LEDLPYTIGNCSSLTELRLDFNQLRALPEAI 362
L + P I C SLT+L++ N +R + E I
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 33/264 (12%)
Query: 213 LTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGI-KTLKKLDIHSNQLINLPDSFG 271
L +Q+E + G + LNL+ N+I +P++ G + ++ L N+L +P+ F
Sbjct: 338 LYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 272 ----DLINLIDLDLH------ANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTS 321
+ + ID + L T IN+ +++L +N+ + P + S
Sbjct: 398 AKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
Query: 322 -LKTLNVETNELEDLPY--------TIGNCSSLTELRLDFNQLRALPEAI--GKLECLEI 370
L ++N+ N L ++P N LT + L FN+L L + L L
Sbjct: 458 PLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517
Query: 371 LTLHYNRIKGLPTTIGNLTKLK------ELDVSFNE-LESITENLCFAVSLKKLNVGNNF 423
+ L YN PT N + LK + D N L E + SL +L +G+N
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN- 576
Query: 424 ADLRALPRSIGNLEMLEQLDISDD 447
D+R + I + LDI D+
Sbjct: 577 -DIRKVNEKI--TPNISVLDIKDN 597
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 282 HANRLKTLPATFGNLINLMNLDL-GSNEFTHLPDTIGCLTSLKTLNVETN------ELED 334
+A + KT + NL +L ++++ T LP + L + +NV N +L+D
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKD 293
Query: 335 LPYTIGNCS---SLTELRLDFNQLRALP--------EAIGKLECLEILTLHYNRIKGLPT 383
+ + + + + +N L+ P + +G LECL YN+++G
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECL------YNQLEGKLP 347
Query: 384 TIGNLTKLKELDVSFNELESITENLC-FAVSLKKLNVGNNFADLRALP 430
G+ KL L++++N++ I N C F ++ L+ +N L+ +P
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN--KLKYIP 393
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 98/270 (36%), Gaps = 56/270 (20%)
Query: 235 LSENRIMALP--SSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
+ N + P +S+ K L L+ NQL +FG I L L+L N++ +PA
Sbjct: 312 IGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371
Query: 293 F-GNLINLMNLDLGSNEFTHLPDT------------------IGCL----------TSLK 323
F G + NL N+ ++P+ IG + T K
Sbjct: 372 FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFK 431
Query: 324 TLNVET-----NELEDLP---YTIGNCSSLTELRLDFNQLRALP--------EAIGKLEC 367
+NV + N++ P ++ G S L+ + L N L +P E
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTG--SPLSSINLXGNXLTEIPKNSLKDENENFKNTYL 489
Query: 368 LEILTLHYNRIKGLPTTI--GNLTKLKELDVSFNELESITENLCFAVSLKKLNVGN---- 421
L + L +N++ L L L +D+S+N + +LK + N
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 422 -NFADLRALPRSIGNLEMLEQLDISDDQIR 450
LR P I L QL I + IR
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 112/261 (42%), Gaps = 41/261 (15%)
Query: 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
L +S N++ LP + LK +D+ +N L LPD L + + N+L+ LP
Sbjct: 136 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN---NQLEELPE- 190
Query: 293 FGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDF 352
NL L + +N LPD L S+ N N LE+LP + N LT + D
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN---NILEELP-ELQNLPFLTTIYADN 246
Query: 353 NQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNL--------------TKLKELDVSF 398
N L+ LP+ LE L + + + LP ++ L L L+ S
Sbjct: 247 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 306
Query: 399 NELESITENLCFAVSLKKLNVGNN-FADLRALPRSIGNL--------------EMLEQLD 443
NE+ S+ + SL++LNV NN +L ALP + L + L+QL
Sbjct: 307 NEIRSLCD---LPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLH 363
Query: 444 ISDDQIRILPDSFRLLSKLRV 464
+ + +R PD + LR+
Sbjct: 364 VEYNPLREFPDIPESVEDLRM 384
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 307 NEFTHLPDTIGCLTS-----------------LKTLNVETNELEDLPYTIGNCSSLTELR 349
N T LP+ L S L+ L V N+LE LP + N S L +
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIID 159
Query: 350 LDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLC 409
+D N L+ LP+ LE + N+++ LP + NL L + N L+ + +
Sbjct: 160 VDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD--- 212
Query: 410 FAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRV 464
+SL+ + GNN L LP + NL L + ++ ++ LPD L L V
Sbjct: 213 LPLSLESIVAGNNI--LEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNV 264
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 126/308 (40%), Gaps = 65/308 (21%)
Query: 206 VLDLRGKLTDQIEWLP----VSIGKLKDVTELNLSENRIMALPSSI----AGIKTLKKLD 257
+L+ G +Q+E LP S K+ DV N S ++ LP S+ AG L++L
Sbjct: 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVD--NNSLKKLPDLPPSLEFIAAGNNQLEELP 189
Query: 258 IHSNQLINLP---DSFGD---LINLIDLDLH-------ANRLKTLPATFGNLINLMNLDL 304
+L NLP + D L L DL L N L+ LP NL L +
Sbjct: 190 ----ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYA 244
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNC----------SSLTELRLDFNQ 354
+N LPD SL+ LNV N L DLP + S L+EL +
Sbjct: 245 DNNLLKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301
Query: 355 LRALPEAIGKL----ECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCF 410
L A I L LE L + N++ LP +L+ L SFN L + E
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPE---L 355
Query: 411 AVSLKKLNV-GNNFADLRALPRSIGNLEM-------------LEQLDISDDQIRILPDSF 456
+LK+L+V N + +P S+ +L M L+QL + + +R PD
Sbjct: 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415
Query: 457 RLLSKLRV 464
+ LR+
Sbjct: 416 ESVEDLRM 423
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 319 LTSLKTLNVETNELEDLPY--TIGNCSSLTELRLDFNQL-----RALPEAIGKLECLEIL 371
++SL+TL+V N L Y T S+ L L N L R LP + ++L
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV------KVL 455
Query: 372 TLHYNRIKGLPTTIGNLTKLKELDVSFNELESITE 406
LH NRI +P + +L L+EL+V+ N+L+S+ +
Sbjct: 456 DLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHAN 284
V L+L NRIM++P + ++ L++L++ SNQL ++PD F L +L + LH N
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 34/162 (20%)
Query: 325 LNVETNELEDLPYTIGNC----SSLTELRLDFNQLR-ALPEAIGKLECLEILTLHYNRIK 379
+N++ + D P+ C SS T L N ++ + L+ L+ L L N +K
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 380 GL---PTTIGNLTKLKELDVSFNELES-----------------ITENL-------CFAV 412
N++ L+ LDVS N L S ++ N+ C
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450
Query: 413 SLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPD 454
+K L++ NN + ++P+ + +L+ L++L+++ +Q++ +PD
Sbjct: 451 KVKVLDLHNN--RIMSIPKDVTHLQALQELNVASNQLKSVPD 490
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 233 LNLSENRIM-----ALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLK 287
LNLS N + LP + K LD+H+N+++++P L L +L++ +N+LK
Sbjct: 433 LNLSSNMLTGSVFRCLPPKV------KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486
Query: 288 TLP-ATFGNLINLMNLDLGSNEF 309
++P F L +L + L N +
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPW 509
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 279 LDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELE 333
LDLH NR+ ++P +L L L++ SN+ +PD + LTSL+ + + N +
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 302 LDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP 336
LDL +N +P + L +L+ LNV +N+L+ +P
Sbjct: 455 LDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 226 KLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR 285
L +TEL LS N + + S+IAG++++K LD+ S Q+ ++ G L NL L L N+
Sbjct: 89 NLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQ 146
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
+ + G L NL L +G+N+ L + L+ L TL + N++ D+ + + +L
Sbjct: 147 ITNISPLAG-LTNLQYLSIGNNQVNDL-TPLANLSKLTTLRADDNKISDI-SPLASLPNL 203
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTL 373
E+ L NQ+ + + L L I+TL
Sbjct: 204 IEVHLKDNQISDV-SPLANLSNLFIVTL 230
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 226 KLKDVTELNLSENRIMALPSSI-AGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHA 283
+L + + R+ +P+++ ++ L L++ +N + +P F DL NL ++ +
Sbjct: 121 RLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGS 179
Query: 284 NRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELE 333
N+L+ +P FG + L L+L SN+ +PD I LTSL+ + + TN +
Sbjct: 180 NKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 231
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 253 LKKLDIHSNQLINLPDSF-GDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFT 310
LK+ + +L ++P + D+ NL L+L AN ++ +P+ F +L NL +++ GSN+
Sbjct: 125 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR 183
Query: 311 HLPDTI-GCLTSLKTLNVETNELEDLP 336
+P I G + LK LN+ +N+L+ +P
Sbjct: 184 QMPRGIFGKMPKLKQLNLASNQLKSVP 210
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 16/122 (13%)
Query: 319 LTSLKTLNVETNELEDLPYTIGNCSSLTELR-LDFNQLRA----LPEAI-GKLECLEILT 372
L LK T L +P + LT++R L +LRA +P + LE LE +
Sbjct: 122 LHGLKRFRFTTRRLTHIPANL-----LTDMRNLSHLELRANIEEMPSHLFDDLENLESIE 176
Query: 373 LHYNRIKGLPTTI-GNLTKLKELDVSFNELESITENLCF--AVSLKKLNVGNNFADLRAL 429
N+++ +P I G + KLK+L+++ N+L+S+ + + F SL+K+ + N D +
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SC 234
Query: 430 PR 431
PR
Sbjct: 235 PR 236
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN DL LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--DLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N+ T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNDLTELPA--GLLNGLENLD 175
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 221 PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLID 278
P + L + L+L + L P G+ L+ L + N L LPD +F DL NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLP 336
L LH NR+ ++P F L +L L L N + P L L TL + N L LP
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 337 Y-TIGNCSSLTELRLDFN 353
+ SL LRL+ N
Sbjct: 217 AEVLVPLRSLQYLRLNDN 234
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 52/202 (25%)
Query: 227 LKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR 285
L+ + L L N+I + + + ++ L+KL I N L+ +P + +L++L +H NR
Sbjct: 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELRIHDNR 134
Query: 286 LKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLK--------------------T 324
++ +P F L N+ +++G N + G LK T
Sbjct: 135 IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET 194
Query: 325 LN--------VETNELEDLP-----YTIG----------NCS-----SLTELRLDFNQLR 356
LN ++ ELEDL Y +G N S +L EL LD N+L
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 357 ALPEAIGKLECLEILTLHYNRI 378
+P + L+ L+++ LH N I
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNI 276
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 36/216 (16%)
Query: 279 LDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDLP 336
LDL N + L F L +L L L +N+ + + + L L+ L + N L ++P
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 337 YTIGNCSSLTELRLDFNQLRALPEAI----GKLECLEI-----------------LTLHY 375
+ SSL ELR+ N++R +P+ + + C+E+ L L+Y
Sbjct: 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176
Query: 376 NRIK-----GLPTTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRAL 429
RI G+P + L EL + N++++I E+L L +L +G+N +R +
Sbjct: 177 LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN--QIRMI 232
Query: 430 PR-SIGNLEMLEQLDISDDQIRILPDSFRLLSKLRV 464
S+ L L +L + ++++ +P L L+V
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNEL 332
L NL L+L+ N++ + + NL+ L NL +G+N+ T + + LT+L+ L + + +
Sbjct: 65 LTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNI 122
Query: 333 EDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLK 392
D+ + N + L L N + + L LT+ +++K + T I NLT L
Sbjct: 123 SDIS-PLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDV-TPIANLTDLY 180
Query: 393 ELDVSFNELESIT-----ENLCFAVS----------------LKKLNVGNN-FADLRALP 430
L +++N++E I+ +L + + L L +GNN DL L
Sbjct: 181 SLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPL- 239
Query: 431 RSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFR 466
NL L L+I +QI + ++ + L+KL+
Sbjct: 240 ---ANLSQLTWLEIGTNQISDI-NAVKDLTKLKXLN 271
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN +L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN +L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 226 KLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR 285
L +TEL LS N + + S+IAG++++K LD+ S Q+ ++ L NL L L N+
Sbjct: 83 NLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQ 140
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSL 345
+ + + L NL L +G+ + + L + L+ L TL + N++ D+ + + +L
Sbjct: 141 ITNI-SPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SPLASLPNL 197
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP 382
E+ L NQ+ + + L I+TL I P
Sbjct: 198 IEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP 233
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN +L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 262 QLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHL-PDTIGCL 319
+L +PD N+ L+L N+L+ LPA F L +LD+G N + L P+ L
Sbjct: 20 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 77
Query: 320 TSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRAL 358
LK LN++ NEL L T C++LTEL L N ++ +
Sbjct: 78 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 247 IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDL 304
+ G+ L L++ SN +P + F DL L +DL N L TLPA+ F N ++L +L+L
Sbjct: 537 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 596
Query: 305 GSNEFT 310
N T
Sbjct: 597 QKNLIT 602
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 227 LKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL---PDSFGDLINLIDLDLH 282
L+++ E+ LS N+ + L +S A + +L++L + L N+ P F L NL LDL
Sbjct: 434 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Query: 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT---------IGCLTSLKTLNVETNEL 332
N + + L L LDL N L + L+ L LN+E+N
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 553
Query: 333 EDLPYTIGNCSSLTELR---LDFNQLRALPEAIGKLEC-LEILTLHYNRIKGLPTTIGN- 387
+++P + L EL+ L N L LP ++ + L+ L L N I + +
Sbjct: 554 DEIPVEV--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 611
Query: 388 -LTKLKELDVSFNELESITENLCFAVS 413
L ELD+ FN + E++ + V+
Sbjct: 612 AFRNLTELDMRFNPFDCTCESIAWFVN 638
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 262 QLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHL-PDTIGCL 319
+L +PD N+ L+L N+L+ LPA F L +LD+G N + L P+ L
Sbjct: 25 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 82
Query: 320 TSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRAL 358
LK LN++ NEL L T C++LTEL L N ++ +
Sbjct: 83 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 247 IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDL 304
+ G+ L L++ SN +P + F DL L +DL N L TLPA+ F N ++L +L+L
Sbjct: 542 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 601
Query: 305 GSNEFT 310
N T
Sbjct: 602 QKNLIT 607
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 227 LKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL---PDSFGDLINLIDLDLH 282
L+++ E+ LS N+ + L +S A + +L++L + L N+ P F L NL LDL
Sbjct: 439 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Query: 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT---------IGCLTSLKTLNVETNEL 332
N + + L L LDL N L + L+ L LN+E+N
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 558
Query: 333 EDLPYTIGNCSSLTELR---LDFNQLRALPEAIGKLEC-LEILTLHYNRIKGLPTTIGN- 387
+++P + L EL+ L N L LP ++ + L+ L L N I + +
Sbjct: 559 DEIPVEV--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 616
Query: 388 -LTKLKELDVSFNELESITENLCFAVS 413
L ELD+ FN + E++ + V+
Sbjct: 617 AFRNLTELDMRFNPFDCTCESIAWFVN 643
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--QLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N+ T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N+L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--QLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N+ T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N+L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 227 LKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR 285
LK++ L L N+I + P + A + L++L + NQL LP+ L +L +H N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENE 132
Query: 286 L-KTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLN---VETNELEDLPYTIGN 341
+ K + F L ++ ++LG+N G +K L+ + + +P G
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GL 190
Query: 342 CSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFN 399
SLTEL LD N++ + A + L L L L +N I + ++ N L+EL ++ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 400 ELESITENL 408
+L + L
Sbjct: 251 KLVKVPGGL 259
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDL 279
P + L + L LS+N++ LP + KTL++L +H N++ + S F L +I +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 280 DLHANRLKTLP---ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP 336
+L N LK+ F + L + + T +P G SL L+++ N++ +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVD 208
Query: 337 Y-------------------------TIGNCSSLTELRLDFNQLRALPEAIGKLECLEIL 371
++ N L EL L+ N+L +P + + ++++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268
Query: 372 TLHYNRIKGL 381
LH N I +
Sbjct: 269 YLHNNNISAI 278
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--QLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N+ T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N+L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 262 QLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHL-PDTIGCL 319
+L +PD N+ L+L N+L+ LPA F L +LD+G N + L P+ L
Sbjct: 15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 72
Query: 320 TSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRAL 358
LK LN++ NEL L T C++LTEL L N ++ +
Sbjct: 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 247 IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDL 304
+ G+ L L++ SN +P + F DL L +DL N L TLPA+ F N ++L +L+L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591
Query: 305 GSNEFT 310
N T
Sbjct: 592 QKNLIT 597
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 227 LKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL---PDSFGDLINLIDLDLH 282
L+++ E+ LS N+ + L +S A + +L++L + L N+ P F L NL LDL
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT---------IGCLTSLKTLNVETNEL 332
N + + L L LDL N L + L+ L LN+E+N
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 333 EDLPYTIGNCSSLTELR---LDFNQLRALPEAIGKLEC-LEILTLHYNRIKGLPTTIGN- 387
+++P + L EL+ L N L LP ++ + L+ L L N I + +
Sbjct: 549 DEIPVEV--FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 388 -LTKLKELDVSFNELESITENLCFAVS 413
L ELD+ FN + E++ + V+
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVN 633
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--QLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N+ T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N+L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNQLTELPA--GLLNGLENLD 175
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 28/181 (15%)
Query: 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
L L N L T AT L L+L E T L G L L TL++ N+L+ LP
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPL 94
Query: 338 TIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVS 397
+LT L + FN+L +LP +G L L +L+EL +
Sbjct: 95 LGQTLPALTVLDVSFNRLTSLP--LGALR--------------------GLGELQELYLK 132
Query: 398 FNELESITENLCFAVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDS 455
NEL+++ L L+KL++ NN +L LP + N LE L+ L + ++ + +P
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 456 F 456
F
Sbjct: 191 F 191
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N T LP + L +L TL ++ N L +P
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 147 TPKLEKLSLANNNLTELPA--GLLNGLENLD 175
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 227 LKDVTELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLIDLDLHA 283
L+++ L++S +A G+ +L+ L + N LPD F +L NL LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELE 333
+L+ L P F +L +L L++ SN+ +PD I LTSL+ + + TN +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 29/133 (21%)
Query: 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD--SFGDLINLIDLDLHANRLKT-- 288
L+LS N ++ + S+ G++ L+ LD + L + + F L NLI LD+ +
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 289 ------------------------LPATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLK 323
LP F L NL LDL + L P L+SL+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 324 TLNVETNELEDLP 336
LN+ +N+L+ +P
Sbjct: 498 VLNMASNQLKSVP 510
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 254 KKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTH 311
K LD+ N L +L SF L LDL ++T+ + +L +L L L N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 312 LPDTIGCLTSLKTLN----VETN--ELEDLPYTIGNCSSLTELRLDFNQLRA--LPEAIG 363
L +G + L +L VETN LE+ P IG+ +L EL + N +++ LPE
Sbjct: 91 L--ALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 364 KLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFA-------VSLKK 416
L LE L L N+I+ + T +L L ++ + L+ + F + L K
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204
Query: 417 LNVGNNFADLRALPRSIGNLEMLE 440
L + NNF L + I L LE
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLE 228
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 134
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 175
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 35/192 (18%)
Query: 249 GIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLP--ATFGNLINLMNLDLGS 306
G +LK LD+ N +I + +F L L LD + LK + + F +L NL+ LD+
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 307 NEFTH----LPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI 362
TH L+SL+ L + N ++ LP+
Sbjct: 431 ---THTRVAFNGIFNGLSSLEVLKMAGNSFQE---------------------NFLPDIF 466
Query: 363 GKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITENLCF--AVSLKKLNV 419
+L L L L +++ L PT +L+ L+ L+++ N+L+S+ + + F SL+K+ +
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWL 525
Query: 420 GNNFADLRALPR 431
N D + PR
Sbjct: 526 HTNPWDC-SCPR 536
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 123/265 (46%), Gaps = 23/265 (8%)
Query: 192 MAAVIENSAKTGAVVLDLRGKLTDQIEWLPVSI-GKLKDVTELNLSENRIMALPSSI-AG 249
+ + +E A L G +++++ +P+ + L ++T+L++SEN+I+ L +
Sbjct: 67 IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Query: 250 IKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSN 307
+ LK L++ N L+ + +F L +L L L L ++P +L L+ L L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186
Query: 308 EFTHLPD-TIGCLTSLKTLNVETNELEDLPY---TIGNC---SSLTELRLDFNQLRALPE 360
+ D + L LK L E+ PY NC +LT L + L A+P
Sbjct: 187 NINAIRDYSFKRLYRLKVL-----EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 361 -AIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITENLCFAV--SLKK 416
A+ L L L L YN I + + + L +L+E+ + +L ++ E F L+
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRV 300
Query: 417 LNV-GNNFADL-RALPRSIGNLEML 439
LNV GN L ++ S+GNLE L
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETL 325
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 227 LKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR 285
LK++ L L N+I + P + A + L++L + NQL LP+ L +L +H N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENE 132
Query: 286 L-KTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLN---VETNELEDLPYTIGN 341
+ K + F L ++ ++LG+N G +K L+ + + +P G
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GL 190
Query: 342 CSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFN 399
SLTEL LD N++ + A + L L L L +N I + ++ N L+EL ++ N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 400 ELESITENL 408
+L + L
Sbjct: 251 KLVKVPGGL 259
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 33/190 (17%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDL 279
P + L + L LS+N++ LP + KTL++L +H N++ + S F L +I +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 280 DLHANRLKTLP---ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP 336
+L N LK+ F + L + + T +P G SL L+++ N++ +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVD 208
Query: 337 Y-------------------------TIGNCSSLTELRLDFNQLRALPEAIGKLECLEIL 371
++ N L EL L+ N+L +P + + ++++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 268
Query: 372 TLHYNRIKGL 381
LH N I +
Sbjct: 269 YLHNNNISAI 278
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 291 ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRL 350
AT L L+L E T L G L L TL++ N+L+ LP +LT L +
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV 108
Query: 351 DFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCF 410
FN+L +LP +G L L +L+EL + NEL+++ L
Sbjct: 109 SFNRLTSLP--LGALR--------------------GLGELQELYLKGNELKTLPPGLLT 146
Query: 411 AVS-LKKLNVGNNFADLRALPRSIGN-LEMLEQLDISDDQIRILPDSF 456
L+KL++ NN +L LP + N LE L+ L + ++ + +P F
Sbjct: 147 PTPKLEKLSLANN--NLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283
G L + L+LS N++ +LP + L LD+ N+L +LP + L L +L L
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLP 336
N LKTL P L L L +N T LP + L +L TL ++ N L +P
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 215 DQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGD 272
+Q++ LP+ L +T L++S NR+ +LP ++ G+ L++L + N+L LP
Sbjct: 88 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 273 LINLIDLDLHANRLKTLPATFGNLINLMNLD 303
L L L N L LPA G L L NLD
Sbjct: 148 TPKLEKLSLANNNLTELPA--GLLNGLENLD 176
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 345 LTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE 402
+T L L N+LRALP A+ L CLE+L N ++ + + NL +L+EL + N L+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLK 287
VT L+LS NR+ ALP ++A ++ L+ L N L N+ D +L L +L L NRL+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 345 LTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE 402
+T L L N+LRALP A+ L CLE+L N ++ + + NL +L+EL + N L+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLK 287
VT L+LS NR+ ALP ++A ++ L+ L N L N+ D +L L +L L NRL+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNNRLQ 521
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 278 DLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDL 335
++DL N LK L + +F N L LDL E + D L L L + N ++
Sbjct: 31 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS- 89
Query: 336 PYTIGNCSSLTELR------LDFNQLRALPEAIGKLECLEILTLHYNRIKG--LPTTIGN 387
++ G+ S LT L L + P IG+L L+ L + +N I LP N
Sbjct: 90 -FSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 146
Query: 388 LTKLKELDVSFNELESITEN 407
LT L +D+S+N +++IT N
Sbjct: 147 LTNLVHVDLSYNYIQTITVN 166
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 312 LPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLE 369
+PD I +S K +++ N L+ L Y+ N S L L L ++ + + A L L
Sbjct: 21 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 370 ILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITENLCFA--VSLKKLNVGNNFADL 426
L L N I+ P + LT L+ L +L S+ E+ ++LKKLNV +NF
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHS 137
Query: 427 RALPRSIGNLEMLEQLDISDDQIRIL 452
LP NL L +D+S + I+ +
Sbjct: 138 CKLPAYFSNLTNLVHVDLSYNYIQTI 163
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 269 SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTL- 325
SF + L LDL ++T+ + L +L NL L N P + LTSL+ L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 326 NVETN--ELEDLPYTIGNCSSLTELRLDFNQLRA--LPEAIGKLECLEILTLHYNRIKGL 381
VET LE P IG +L +L + N + + LP L L + L YN I+ +
Sbjct: 106 AVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
Query: 382 PTTIGNLTKLKE-------LDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIG 434
T+ +L L+E LD+S N ++ I + + L +L + NF + +
Sbjct: 164 --TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 221
Query: 435 NLEMLE 440
NL L
Sbjct: 222 NLAGLH 227
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQL--INLPDSFGDLINLI 277
P S L + L E ++ +L S I + TLKKL++ N + LP F +L NL+
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 278 DLDLHANRLKTL 289
+DL N ++T+
Sbjct: 152 HVDLSYNYIQTI 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T +++ M L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI-G 363
S + + P ++ +++ L EL LD NQL+++P+ I
Sbjct: 182 LSLDLSLNPMNF----------IQPGAFKEI--------RLKELALDTNQLKSVPDGIFD 223
Query: 364 KLECLEILTLHYN 376
+L L+ + LH N
Sbjct: 224 RLTSLQKIWLHTN 236
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 21 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 136
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T +++ M L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI-G 363
S + + P ++ +++ L EL LD NQL+++P+ I
Sbjct: 181 LSLDLSLNPMNF----------IQPGAFKEI--------RLKELALDTNQLKSVPDGIFD 222
Query: 364 KLECLEILTLHYN 376
+L L+ + LH N
Sbjct: 223 RLTSLQKIWLHTN 235
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 20 FYKIPDNLP--FSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 135
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 176
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T +++ M L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI-G 363
S + + P ++ +++ L EL LD NQL+++P+ I
Sbjct: 181 LSLDLSLNPMNF----------IQPGAFKEI--------RLKELALDTNQLKSVPDGIFD 222
Query: 364 KLECLEILTLHYN 376
+L L+ + LH N
Sbjct: 223 RLTSLQKIWLHTN 235
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 20 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 77
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 78 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 135
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 176
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 278 DLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDL 335
++DL N LK L + +F N L LDL E + D L L L + N ++
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS- 94
Query: 336 PYTIGNCSSLTELR------LDFNQLRALPEAIGKLECLEILTLHYNRIKG--LPTTIGN 387
++ G+ S LT L L + P IG+L L+ L + +N I LP N
Sbjct: 95 -FSPGSFSGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 388 LTKLKELDVSFNELESITEN 407
LT L +D+S+N +++IT N
Sbjct: 152 LTNLVHVDLSYNYIQTITVN 171
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 312 LPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLE 369
+PD I +S K +++ N L+ L Y+ N S L L L ++ + + A L L
Sbjct: 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 370 ILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITENLCFA--VSLKKLNVGNNFADL 426
L L N I+ P + LT L+ L +L S+ E+ ++LKKLNV +NF
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHS 142
Query: 427 RALPRSIGNLEMLEQLDISDDQIRIL 452
LP NL L +D+S + I+ +
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTI 168
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 269 SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTL- 325
SF + L LDL ++T+ + L +L NL L N P + LTSL+ L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 326 NVETN--ELEDLPYTIGNCSSLTELRLDFNQLRA--LPEAIGKLECLEILTLHYNRIKGL 381
VET LE P IG +L +L + N + + LP L L + L YN I+ +
Sbjct: 111 AVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 382 PTTIGNLTKLKE-------LDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIG 434
T+ +L L+E LD+S N ++ I + + L +L + NF + +
Sbjct: 169 --TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226
Query: 435 NLEMLE 440
NL L
Sbjct: 227 NLAGLH 232
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQL--INLPDSFGDLINLI 277
P S L + L E ++ +L S I + TLKKL++ N + LP F +L NL+
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 278 DLDLHANRLKTL 289
+DL N ++T+
Sbjct: 157 HVDLSYNYIQTI 168
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 50/172 (29%)
Query: 299 LMNLDLGSNEFTHLPDTI----GCLTSLKTLNVETNELEDLPYTI--------------- 339
++LD +N T DT+ G LT L+TL ++ N+L++L
Sbjct: 326 FLHLDFSNNLLT---DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382
Query: 340 ----------GNCS---SLTELRLDFNQL-----RALPEAIGKLECLEILTLHYNRIKGL 381
G+CS SL L + N L R LP I ++L LH N+IK +
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKSI 436
Query: 382 PTTIGNLTKLKELDVSFNELESITENLCF--AVSLKKLNVGNNFADLRALPR 431
P + L L+EL+V+ N+L+S+ + + F SL+K+ + N D + PR
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC-SCPR 486
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 23/186 (12%)
Query: 293 FGNLINLMNLDLGSNEFTHL--PDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR- 349
F N+ N+ N + H+ P I + L+ N L D + NC LTEL
Sbjct: 299 FSNM-NIKNFTVSGTRMVHMLCPSKI---SPFLHLDFSNNLLTDTVFE--NCGHLTELET 352
Query: 350 --LDFNQLRAL---PEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI 404
L NQL+ L E +++ L+ L + N + G+ + K L +S N +I
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWTKSL-LSLNMSSNI 410
Query: 405 TENL---CFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSF--RLL 459
+ C +K L++ +N ++++P+ + LE L++L+++ +Q++ +PD RL
Sbjct: 411 LTDTIFRCLPPRIKVLDLHSN--KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468
Query: 460 SKLRVF 465
S +++
Sbjct: 469 SLQKIW 474
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHAN 284
L+L N+I ++P + ++ L++L++ SNQL ++PD F L +L + LH N
Sbjct: 426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 228 KDVTELNLSENRIM-----ALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLH 282
K + LN+S N + LP I K LD+HSN++ ++P L L +L++
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKSIPKQVVKLEALQELNVA 452
Query: 283 ANRLKTLP-ATFGNLINLMNLDLGSNEF 309
+N+LK++P F L +L + L +N +
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 228 KDVTELNLSENRIMALPSS-IAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHANR 285
+ T LN+S+N I L +S I + L+ L I N++ L S F L LDL N+
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHLP--DTIGCLTSLKTLNVETNELE 333
L + +NL +LDL N F LP G ++ LK L + T LE
Sbjct: 81 LVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T +++ M L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI-G 363
S + + P ++ +++ L EL LD NQL+++P+ I
Sbjct: 180 LSLDLSLNPMNF----------IQPGAFKEI--------RLKELALDTNQLKSVPDGIFD 221
Query: 364 KLECLEILTLHYN 376
+L L+ + LH N
Sbjct: 222 RLTSLQKIWLHTN 234
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 134
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 175
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T +++ M L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAI-G 363
S + + P ++ +++ L EL LD NQL+++P+ I
Sbjct: 182 LSLDLSLNPMNF----------IQPGAFKEI--------RLKELALDTNQLKSVPDGIFD 223
Query: 364 KLECLEILTLHYN 376
+L L+ + LH N
Sbjct: 224 RLTSLQKIWLHTN 236
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 21 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 78
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL L+ + LE+ + +LK+LNV +N
Sbjct: 79 HLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHN 136
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 177
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 37/240 (15%)
Query: 233 LNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP 290
LNL EN+I + +S ++ L+ L + N + + +F L NL L+L NRL T+P
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 291 ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELR 349
+ F + L+ LK L + N +E +P Y SL R
Sbjct: 129 ---------------NGAFVY-------LSKLKELWLRNNPIESIPSYAFNRIPSLR--R 164
Query: 350 LDFNQLRALPE----AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
LD +L+ L A L L L L ++ +P + L KL ELD+S N L +I
Sbjct: 165 LDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIR 223
Query: 406 E-NLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILP-DSFRLLSKL 462
+ + L+KL + + ++ + R + NL+ L +++++ + + +LP D F L L
Sbjct: 224 PGSFQGLMHLQKLWMIQ--SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 28/200 (14%)
Query: 230 VTELNLSENRIMALPSSIA-GIKTLKKLDIHSNQLIN-------LPDSFGDLINLIDLDL 281
V + + +++ +P ++ +K+L+ LD+ N ++ D++ L LI
Sbjct: 312 VKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQN 371
Query: 282 HANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELED----LPY 337
H L+ T L NL N+D+ N F +P+T +K LN+ + + +P
Sbjct: 372 HLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPK 431
Query: 338 TI--------------GNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPT 383
T+ N L EL + N+L LP+A L L +L + N++K +P
Sbjct: 432 TLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLKSVPD 490
Query: 384 TIGN-LTKLKELDVSFNELE 402
I + LT L+++ + N +
Sbjct: 491 GIFDRLTSLQKIWLHTNPWD 510
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 225 GKLKDVTELNLSENRIMALPSS-IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLH 282
G + V L+LS NRI + +S + L+ L + SN + + DSF L +L LDL
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT--IGCLTSLKTLNVETNELEDLPYTI 339
N L L ++ F L +L L+L N + L +T LT L+ L V
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV------------ 130
Query: 340 GNCSSLTEL-RLDFNQLRALPE 360
GN + T++ R DF L L E
Sbjct: 131 GNMDTFTKIQRKDFAGLTFLEE 152
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 227 LKDVTELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLIDLDLHA 283
L+++ L++S +A G+ +L+ L + N LPD F +L NL LDL
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLPDTI--GCLTSLKTLNVETN--------EL 332
+L+ L P F +L +L L++ N F L DT CL SL+ L+ N EL
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 333 EDLPYTIG 340
+ P ++
Sbjct: 244 QHFPSSLA 251
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 343 SSLTELRLDFNQLRALPEAI-GKLECLEILTLHYN--RIKGLPTT--IGNLTKLKELDVS 397
SS T L L+ N+L++LP + KL L L+L N KG + G T LK LD+S
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLS 86
Query: 398 FNELESITENLCFAVSLKKLNVGNNFADLRALPR--SIGNLEMLEQLDISDDQIRILPDS 455
FN + +++ N L+ L+ + ++L+ + +L L LDIS R+ +
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQH--SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 456 -FRLLSKLRVFR 466
F LS L V +
Sbjct: 145 IFNGLSSLEVLK 156
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 77/183 (42%), Gaps = 39/183 (21%)
Query: 317 GCLTSLKTLNVETNELEDLPYTIGN-CSSLTELRLDFNQLR---ALPEAIGKLECLEILT 372
G +S L +E+N+L+ LP+ + + + LT+L L N L ++ L+ L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 373 LHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNV------------- 419
L +N + + + L +L+ LD + L+ ++E F+V L N+
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA 141
Query: 420 -----------------GNNFADLRALPRSIGNLEMLEQLDISDDQIRIL-PDSFRLLSK 461
GN+F + LP L L LD+S Q+ L P +F LS
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200
Query: 462 LRV 464
L+V
Sbjct: 201 LQV 203
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 227 LKDVTELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLIDLDLHA 283
L+++ L++S +A G+ +L+ L + N LPD F +L NL LDL
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLPDTI--GCLTSLKTLNVETNEL 332
+L+ L P F +L +L L++ N F L DT CL SL+ L+ N +
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHI 554
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 254 KKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTH 311
K LD+ N L +L SF L LDL ++T+ + +L +L L L N
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 312 LPDTIGCLTSLKTLN----VETN--ELEDLPYTIGNCSSLTELRLDFNQLRA--LPEAIG 363
L +G + L +L VETN LE+ P IG+ +L EL + N +++ LPE
Sbjct: 115 L--ALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 170
Query: 364 KLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFA-------VSLKK 416
L LE L L N+I+ + T +L L ++ + L+ + F + L K
Sbjct: 171 NLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228
Query: 417 LNVGNNFADLRALPRSIGNLEMLE 440
L + NNF L + I L LE
Sbjct: 229 LTLRNNFDSLNVMKTCIQGLAGLE 252
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 100
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 101 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 158
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 199
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 227 LKDVTELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLIDLDLHA 283
L+++ L++S +A G+ +L+ L + N LPD F +L NL LDL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 284 NRLKTL-PATFGNLINLMNLDLGSNEFTHLPDTI--GCLTSLKTLNVETNEL 332
+L+ L P F +L +L L++ N F L DT CL SL+ L+ N +
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNSLQVLDYSLNHI 530
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 247 IAGIKTLKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPAT 292
I +KTLK+L++ N Q LP+ F +L NL LDL +N+++++ T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 23/204 (11%)
Query: 254 KKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTH 311
K LD+ N L +L SF L LDL ++T+ + +L +L L L N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 312 LPDTIGCLTSLKTLN----VETN--ELEDLPYTIGNCSSLTELRLDFNQLRA--LPEAIG 363
L +G + L +L VETN LE+ P IG+ +L EL + N +++ LPE
Sbjct: 91 L--ALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 364 KLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFA-------VSLKK 416
L LE L L N+I+ + T +L L ++ + L+ + F + L K
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204
Query: 417 LNVGNNFADLRALPRSIGNLEMLE 440
L + NNF L + I L LE
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLE 228
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 309 FTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLE 366
F +PD + S K L++ N L L Y+ + L L L +++ + + A L
Sbjct: 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 367 CLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
L L L N I+ L + + +L KL ++ + LE+ + +LK+LNV +N
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHN 134
Query: 423 FADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468
LP NL LE LD+S ++I+ + + LRV M
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQM 175
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 46/227 (20%)
Query: 232 ELNLSENRIMALPSSIAGIKTLKKLDI---HSNQLINLPDSFGDLINLIDLDLHANRLKT 288
EL+L+ + LPS + G+ LKKL + H +QL + S + +L L + N K
Sbjct: 279 ELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQI--SAANFPSLTHLYIRGNVKK- 335
Query: 289 LPATFGNLINLMNLDLGSNEFTHLPDTIGC---LTSLKTLNVETNELED---LPYTIGNC 342
L LG +GC L +L+TL++ N++E + N
Sbjct: 336 -------------LHLG----------VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 343 SSLTELRLDFNQLRALPEAIGKLEC--LEILTLHYNR--IKGLPTTIGNLTKLKELDVSF 398
S L L L N+ L K EC LE+L L + R I + NL L+ L++++
Sbjct: 373 SHLQTLNLSHNEPLGLQSQAFK-ECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 399 NELESITENLCFAVS-LKKLNV-GNNFAD----LRALPRSIGNLEML 439
L++ ++L + L+ LN+ GN+F D L +++G+LE+L
Sbjct: 432 CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL 478
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 221 PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP------------ 267
P + K + ++LS N+I L P + G+++L L ++ N++ LP
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 268 -------------DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEF 309
D+F DL NL L L+ N+L+T+ TF L + + L N F
Sbjct: 109 LLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 221 PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP------------ 267
P + K + ++LS N+I L P + G+++L L ++ N++ LP
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 268 -------------DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEF 309
D+F DL NL L L+ N+L+T+ TF L + + L N F
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 20/210 (9%)
Query: 217 IEWLPVSIGK-LKDVTELNLSENRIMALPSSI-AGIKTLKKLDIHSNQLINLPD-SFGDL 273
I +LP + + + +T L L N + +LP I L L + +N L + D +F
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 274 INLIDLDLHANRLKT-----LPATFG-----NLINLMNLDLGSNEFTHLPDTIGCL---- 319
+L +L L +NRL +P+ F NL++ + + + E ++I +
Sbjct: 171 TSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230
Query: 320 -TSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQL-RALPEAIGKLECLEILTLHYNR 377
L L ++ N L D + + N L E+ L +N+L + + K++ LE L + NR
Sbjct: 231 NVELTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 378 IKGLPTTIGNLTKLKELDVSFNELESITEN 407
+ L + LK LD+S N L + N
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERN 319
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQ 262
G V +DL ++I + P K++ + L +S NR++AL I TLK LD+ N
Sbjct: 255 GLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 263 LINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEF 309
L+++ + L +L L N + TL + + L NL L N++
Sbjct: 313 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDW 357
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 17/217 (7%)
Query: 208 DLRGKLTDQIEWLPVSIGKLKDVTELNLSE-NRIMALPSSIAGIKTLKKLDIHSNQLINL 266
D Q E +S LKD+T++ L LP + + L+ L+I N+ I+
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISA 530
Query: 267 PDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLN 326
D L D + +++ + NL EF ++ L L+
Sbjct: 531 AQLKADWTRLADDEDTGPKIQIFYXGYNNL----------EEFP-ASASLQKXVKLGLLD 579
Query: 327 VETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKL-ECLEILTLHYNRIKGLPTTI 385
N++ L G LT+L+LD+NQ+ +PE + +E L +N++K +P
Sbjct: 580 CVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638
Query: 386 G--NLTKLKELDVSFNELESITENL-CFAVSLKKLNV 419
++ +D S+N++ S N+ C K +N
Sbjct: 639 NAKSVYVXGSVDFSYNKIGSEGRNISCSXDDYKGINA 675
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 28/149 (18%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280
P+S L + ++ EN + + L +D+ N+L +L D F
Sbjct: 698 PISTIILSNNLXTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF---------- 747
Query: 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNV------ETNE-LE 333
R TLP L N D+ N F+ P + LK + E N L
Sbjct: 748 ----RATTLPY-------LSNXDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR 796
Query: 334 DLPYTIGNCSSLTELRLDFNQLRALPEAI 362
P I C SL +L++ N +R + E +
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKL 825
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 227 LKDVTELNLSENRIMALPSSIA-GIKTLKKLDIHSNQLIN--LPDSF--GDLINLIDLDL 281
L+ V + + +++ +P S + +K+L+ LD+ N ++ L +S G +L L L
Sbjct: 335 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 394
Query: 282 HANRLKTLPAT---FGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVET--------- 329
N L+++ T L NL +LD+ N F +PD+ ++ LN+ +
Sbjct: 395 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 454
Query: 330 --NELEDLPYTIGNCSS-------LTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKG 380
LE L + N S L EL + N+L+ LP+A L ++ + N++K
Sbjct: 455 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKIASNQLKS 513
Query: 381 LPTTIGN-LTKLKELDVSFNELE 402
+P I + LT L+++ + N +
Sbjct: 514 VPDGIFDRLTSLQKIWLHTNPWD 536
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 227 LKDVTELNLSENRIMALPSSIA-GIKTLKKLDIHSNQLIN--LPDSF--GDLINLIDLDL 281
L+ V + + +++ +P S + +K+L+ LD+ N ++ L +S G +L L L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
Query: 282 HANRLKTLPAT---FGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVET--------- 329
N L+++ T L NL +LD+ N F +PD+ ++ LN+ +
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC 428
Query: 330 --NELEDLPYTIGNCSS-------LTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKG 380
LE L + N S L EL + N+L+ LP+A L ++ + N++K
Sbjct: 429 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKS 487
Query: 381 LPTTIGN-LTKLKELDVSFNELE 402
+P I + LT L+++ + N +
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWD 510
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTL 289
T ++ S + ++P+ I T + L ++ NQ+ L P F L L LDL N+L L
Sbjct: 20 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 77
Query: 290 PA-TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTL 325
PA F L L L L N+ +P G +LK+L
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 112
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 317 GCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPEAI-GKLECLEILTLH 374
G T+ + L + N++ L P + LT L LD NQL LP + KL L L+L+
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 375 YNRIKGLPTTIGNLTKLKEL 394
N++K +P G LK L
Sbjct: 95 DNQLKSIPR--GAFDNLKSL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTL 289
T ++ S + ++P+ I T + L ++ NQ+ L P F L L LDL N+L L
Sbjct: 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 290 PA-TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTL 325
PA F L L L L N+ +P G +LK+L
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSL 104
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 317 GCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPEAI-GKLECLEILTLH 374
G T+ + L + N++ L P + LT L LD NQL LP + KL L L+L+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 375 YNRIKGLPTTIGNLTKLKEL 394
N++K +P G LK L
Sbjct: 87 DNQLKSIPR--GAFDNLKSL 104
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 262 QLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHL-PDTIGCL 319
+L ++PD N+ L+L N+L+ LP T F L LD G N + L P+ L
Sbjct: 15 KLTHIPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
Query: 320 TSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRAL 358
LK LN++ NEL + T C++LTEL L N + +
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 208 DLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL 266
++ KL+ Q EW L+++ E+ LS N+ + L SS A + +L++L + L N+
Sbjct: 416 EIEQKLSGQ-EW-----RGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNV 469
Query: 267 ---PDSFGDLINLIDLDLHANRLKTLPATF-GNLINLMNLDLGSNEFTHLP--------- 313
P F L NL LDL N + + L NL LD N L
Sbjct: 470 DISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPV 529
Query: 314 DTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR 349
+ + L+ L LN+E+N L+++P +G +L EL+
Sbjct: 530 NFLKGLSHLHILNLESNGLDEIP--VGVFKNLFELK 563
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 109/268 (40%), Gaps = 50/268 (18%)
Query: 221 PVSIGKLKDVTELNLSENRIMALPSSIAGI-KTLKKLDIHSNQLINLPD-SFGDLINLID 278
P + + + L+ N I L + I LK L++ N+L + D +F NL +
Sbjct: 42 PTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTE 101
Query: 279 LDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDTIGCLTSL---------KTLNVE 328
LDL +N + + + F N NL+ LDL N + G K L +
Sbjct: 102 LDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALR 161
Query: 329 TNELEDLPYTIGNCSSLTELRLDFNQLRALP----EAIGKLE-----------------C 367
+ ELE L GN SSL +L L N L+ + IGKL C
Sbjct: 162 SEELEFL----GN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLC 216
Query: 368 LEI-------LTLHYNRIKGLP-TTIGNL--TKLKELDVSFNELESITE-NLCFAVSLKK 416
E+ L+L N++ +T L T L +LD+S+N L + + + SL+
Sbjct: 217 WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRY 276
Query: 417 LNVGNNFADLRALPRSIGNLEMLEQLDI 444
L++ N R PRS L L L +
Sbjct: 277 LSLEYNNIQ-RLSPRSFYGLSNLRYLSL 303
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 337 YTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELD 395
Y + +CS L +L +P+ + + +L L +N+++ LP T ++L LD
Sbjct: 6 YNVADCSHL--------KLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILD 55
Query: 396 VSFNELESITENLCFAVS-LKKLNVGNN 422
FN + + LC + LK LN+ +N
Sbjct: 56 AGFNSISKLEPELCQILPLLKVLNLQHN 83
>pdb|2J04|B Chain B, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
pdb|2J04|D Chain D, The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor
Iiic
Length = 524
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 26/169 (15%)
Query: 158 EIKKDGLKDLVKSASKKGSFFIGEENTEKLSLMKMAAVIENSAKTGAVVLDLRGKLTDQI 217
EI K ++++K +K+ IGE + E + K+ + + K + ++ G +TD I
Sbjct: 81 EINKTEFENMIKLRTKRLKLLIGEVDAEVSTGDKIEFPVLANGKRRGFIYNVGGLVTD-I 139
Query: 218 EWLPV----SIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLD--IHSNQLINLPDSFG 271
WL + IG KD+ L ++ ++ M P + + L+ D HS+ +
Sbjct: 140 AWLNIEENTDIG--KDIQYLAVAVSQYMDEPLN----EHLEMFDKEKHSSCI-------- 185
Query: 272 DLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLT 320
+ + LH +++T+ +FG + DL +E H P +GCL+
Sbjct: 186 QIFKMNTSTLHCVKVQTIVHSFGEV-----WDLKWHEGCHAPHLVGCLS 229
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 233 LNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP 290
L+L N+I L P + L L++ NQL LP F L L L LH N+LK++P
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 291 -ATFGNLINLMNLDLGSNEF 309
F NL +L ++ L +N +
Sbjct: 105 MGVFDNLKSLTHIYLFNNPW 124
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 317 GCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPEAI-GKLECLEILTLH 374
G T+ + L++ N++ L P + + LT L L NQL ALP + KL L L LH
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 375 YNRIKGLPTTIGNLTKLKEL 394
N++K +P +G LK L
Sbjct: 97 INQLKSIP--MGVFDNLKSL 114
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 286 LKTLPATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPYTIGN-CS 343
L ++PA +++L + N+ T L P LT L LN+ N+L LP + + +
Sbjct: 31 LASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 344 SLTELRLDFNQLRALPEAI 362
LT L L NQL+++P +
Sbjct: 89 KLTHLALHINQLKSIPMGV 107
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 381 LPTTIGNLTKLKELDVSFNELESITENLCFAVS-LKKLNVGNNFADLRAL-PRSIGNLEM 438
L + + T L++L ++ NE+ I +N + ++ L KLN+ NF L ++ R NL+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF--LGSIDSRMFENLDK 348
Query: 439 LEQLDISDDQIRILPD-SFRLLSKLR 463
LE LD+S + IR L D SF L L+
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 233 LNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDLHAN 284
L+LS N I AL S G+ LK+L + +NQL ++PD F L +L + LH N
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 230 VTELNLSENRI---MA--LPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD---- 280
+T L+LS N MA +IAG K ++ L I SN N+ SFG N D D
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTK-IQSL-ILSNS-YNMGSSFGH-TNFKDPDNFTF 269
Query: 281 --LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYT 338
L A+ +KT + + L+ + F+H D L L E N+++D +
Sbjct: 270 KGLEASGVKTCDLSKSKIFALL-----KSVFSHFTD----LEQLTLAQNEINKIDDNAFW 320
Query: 339 IGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDV 396
+ L +L L N L ++ L+ LE+L L YN I+ L + L LKEL +
Sbjct: 321 --GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 397 SFNELESITENLCFAV-SLKKLNVGNNFADLRALPR 431
N+L+S+ + + + SL+K+ + N D + PR
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SCPR 413
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 292 TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLD 351
TF L +L+ L L N+F L G L L V T LT+ LD
Sbjct: 74 TFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLT---------------LTQCNLD 116
Query: 352 FNQLRALPEAIGKLECLEILTLHYNRIKGL-PTTIG-NLTKLKELDVSFNELESITE 406
L L LE+L L N IK + P + N+ + LD++FN+++SI E
Sbjct: 117 GAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 215 DQIEWLPVSIGK-LKDVTELNLSENRIMALPSSI-AGIKTLKKLDIHSNQLINLPD-SFG 271
+ I +LP + + + +T L L N + +LP I L L + +N L + D +F
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 272 DLINLIDLDLHANRLKT-----LPATFG-----NLINLMNLDLGSNEFTHLPDTIGCL-- 319
+L +L L +NRL +P+ F NL++ + + + E ++I +
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222
Query: 320 ---TSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQL-RALPEAIGKLECLEILTLHY 375
L L ++ N L D + + N L E+ L +N+L + + K++ LE L +
Sbjct: 223 PVNVELTILKLQHNNLTDTAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 376 NRIKGLPTTIGNLTKLKELDVSFNELESITEN 407
NR+ L + LK LD+S N L + N
Sbjct: 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVERN 313
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQ 262
G V +DL ++I + P K++ + L +S NR++AL I TLK LD+ N
Sbjct: 249 GLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 306
Query: 263 LINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEF 309
L+++ + L +L L N + TL + + L NL L N++
Sbjct: 307 LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHH--TLKNLTLSHNDW 351
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 39/253 (15%)
Query: 220 LPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLP-DSFGDLINLI 277
+P SI + LNL EN I + + + ++ L+ L + N + + +F L +L
Sbjct: 29 VPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLN 86
Query: 278 DLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP- 336
L+L NRL T+P + F + L+ L+ L + N +E +P
Sbjct: 87 TLELFDNRLTTVP---------------TQAFEY-------LSKLRELWLRNNPIESIPS 124
Query: 337 YTIGNCSSLTELRLDFNQLRAL----PEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLK 392
Y SL RLD +L+ L A L L L L +K +P L +L+
Sbjct: 125 YAFNRVPSLR--RLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTA-LVRLE 181
Query: 393 ELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIR 450
EL++S N L+ I + SL+KL + + A + + R + +L+ LE+L++S + +
Sbjct: 182 ELELSGNRLDLIRPGSFQGLTSLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 451 ILP-DSFRLLSKL 462
LP D F L +L
Sbjct: 240 SLPHDLFTPLHRL 252
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 217 IEWLPVSIGKLKDVT---------ELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLINL 266
+ +L + + LKD+ EL LS NR+ + P S G+ +L+KL + Q+ +
Sbjct: 158 LRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 267 P-DSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEF 309
++F DL +L +L+L N L +LP F L L + L N +
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 37/240 (15%)
Query: 233 LNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP 290
LNL EN I + + + ++ L+ L + N + + +F L +L L+L NRL T+P
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 291 ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELR 349
+ F + L+ L+ L + N +E +P Y SL R
Sbjct: 100 ---------------TQAFEY-------LSKLRELWLRNNPIESIPSYAFNRVPSLR--R 135
Query: 350 LDFNQLRAL----PEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT 405
LD +L+ L A L L L L +K +P + L +L+EL++S N L+ I
Sbjct: 136 LDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIR 194
Query: 406 E-NLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILP-DSFRLLSKL 462
+ SL+KL + + A + + R + +L+ LE+L++S + + LP D F L +L
Sbjct: 195 PGSFQGLTSLRKLWLMH--AQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 216 QIEWLPVSIGKLKDVT---------ELNLSENRI-MALPSSIAGIKTLKKLDIHSNQLIN 265
+ +L + + LKD+ EL LS NR+ + P S G+ +L+KL + Q+
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 266 LP-DSFGDLINLIDLDLHANRLKTLP 290
+ ++F DL +L +L+L N L +LP
Sbjct: 217 IERNAFDDLKSLEELNLSHNNLMSLP 242
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTL 289
T ++ S + ++P+ I T + L ++ N++ L P F L L LDL N+L L
Sbjct: 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 290 PA-TFGNLINLMNLDLGSNEFTHLP----DTIGCLTSLKTLN 326
PA F L L L L N+ +P D + LT + LN
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLN 111
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 343 SSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLP 382
+ LT L LD NQL LP + KL L L+L+ N++K +P
Sbjct: 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 36/148 (24%)
Query: 229 DVTELNLSENRIMALPSSIAGIKTLK-KLDIHSNQLINLPDSFGDLINLIDLDLHANRLK 287
D T +N R+ ++P AGI T K +L +++NQ+ L
Sbjct: 13 DQTLVNCQNIRLASVP---AGIPTDKQRLWLNNNQITKLE-------------------- 49
Query: 288 TLPATFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVETNELEDLPY-TIGNCSSL 345
P F +L+NL L SN+ T +P + LT L L++ N L+ +P N SL
Sbjct: 50 --PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL 107
Query: 346 TELRLDFNQLRALPEAIGKLECLEILTL 373
T + L N EC +I+ L
Sbjct: 108 THIYLYNNPW--------DCECRDIMYL 127
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 46/229 (20%)
Query: 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKT 288
V EL+L+ + LPS I G+ +LKKL +++N L + +L DL + N K
Sbjct: 279 VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRK- 337
Query: 289 LPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTL--------NVETNELEDLPYTIG 340
LDLG+ CL L+ L ++E ++ +L +
Sbjct: 338 -------------LDLGTR----------CLEKLENLQKLDLSHSDIEASDCCNL--QLK 372
Query: 341 NCSSLTELRLDFNQLRALPEAIGKLEC--LEILTLHYN--RIKGLPTTIGNLTKLKELDV 396
N L L L +N+ L + K EC LE+L + + +K + NL L+ L++
Sbjct: 373 NLRHLQYLNLSYNEPLGLEDQAFK-ECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNL 431
Query: 397 SFNELESITENLCFAVS-LKKLNV-GNNFADLRA----LPRSIGNLEML 439
S L++ ++L + L+ LN+ GN+F D L + +G+LE+L
Sbjct: 432 SHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 279 LDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPY 337
++L +R L + TF + LDL + LP I + SLK L + N + L
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQ 317
Query: 338 TIGNCSSLTELRLDF--NQLRAL---PEAIGKLECLEILTLHYNRIKGLPTT---IGNLT 389
N +S LR + +R L + KLE L+ L L ++ I+ + NL
Sbjct: 318 I--NAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLR 375
Query: 390 KLKELDVSFNE---LESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDIS 445
L+ L++S+NE LE C L+ L+V ++A NL +L L++S
Sbjct: 376 HLQYLNLSYNEPLGLEDQAFKEC--PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 227 LKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHAN 284
L + EL +S N + P S G+ +LKKL + ++Q+ + ++F L +L++L+L N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 285 RLKTLPA-TFGNLINLMNLDLGSNEF 309
L +LP F L L+ L L N +
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHNPW 302
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 292 TFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPYTIG---NCSSLTE 347
F NL NL LDLGS++ L PD L L L + L D G N +LT
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 348 LRLDFNQLRA--LPEAIGKLECLEILTLHYNRI 378
L L NQ+R+ L + GKL L+ + N+I
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 42/213 (19%)
Query: 229 DVTELNLSENRIMALPSS-IAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLK 287
+V EL+LS N + + ++ +A L+ L++ SN L D L L LDL+ N ++
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93
Query: 288 ---------TLPATFGNLINL--------MNLDLGSNEFTHLPD-TIGCLTSLKTLNVET 329
TL A N+ + N+ L +N+ T L D GC + ++ L+++
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 330 NELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLT 389
NE++ + + SS T LE L L YN I + +
Sbjct: 154 NEIDTVNFAELAASSDT---------------------LEHLNLQYNFIYDVKGQVV-FA 191
Query: 390 KLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
KLK LD+S N+L + A + +++ NN
Sbjct: 192 KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 225 GKLKDVTELNLSENRIMALPSS-IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLH 282
G + V L+LS NRI + +S + L+ L + SN + + DSF L +L LDL
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT--IGCLTSLKTLNVETNELEDLPYTI 339
N L L ++ F L +L L+L N + L +T LT L+ L V
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV------------ 156
Query: 340 GNCSSLTEL-RLDFNQLRALPE 360
GN + T++ R DF L L E
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEE 178
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 224 IGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDLDL 281
D+ +L L++N I + ++ G+ LK+L + +NQL ++PD F L +L + L
Sbjct: 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWL 354
Query: 282 HAN 284
H N
Sbjct: 355 HTN 357
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 292 TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLD 351
TF L +L+ L L N+F L G L L V T LT+ LD
Sbjct: 74 TFRGLSSLIILKLDYNQFLQL--ETGAFNGLANLEVLT---------------LTQCNLD 116
Query: 352 FNQLRALPEAIGKLECLEILTLHYNRIKGL-PTTIG-NLTKLKELDVSFNELESITE 406
L L LE+L L N IK + P + N+ + LD++FN+++SI E
Sbjct: 117 GAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 44/186 (23%)
Query: 246 SIAGIKTLKKLDIHSNQLINL--PDSFGDLINL--IDLDLHANRLKTLPATFGNLINLMN 301
+ +G L+K++I N ++ + D F +L L I ++ N L P F NL NL
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108
Query: 302 LDLGSNEFTHLPDTIGCLTSLK--------TLNVET--------------------NELE 333
L + + HLPD + + SL+ +N+ T N ++
Sbjct: 109 LLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167
Query: 334 DLPYTIGNCSSLTELRL-DFNQLRALPE-----AIGKLECLEILTLHYNRIKGLPTT-IG 386
++ + N + L EL L D N L LP A G + IL + RI LP+ +
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV----ILDISRTRIHSLPSYGLE 223
Query: 387 NLTKLK 392
NL KL+
Sbjct: 224 NLKKLR 229
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 36/219 (16%)
Query: 207 LDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL 266
LDL G QI + + LNLS N ++ + + TL+ LD+++N + L
Sbjct: 39 LDLSGNPLSQIS--AADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNNYVQEL 95
Query: 267 PDSFGDLINLIDLDLHA--NRLKTLPATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLK 323
L+ LHA N + + + G N+ L +N+ T L D GC + ++
Sbjct: 96 ------LVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQ 147
Query: 324 TLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPT 383
L+++ NE++ + +F +L A + LE L L YN I +
Sbjct: 148 YLDLKLNEIDTV---------------NFAELAASSDT------LEHLNLQYNFIYDVKG 186
Query: 384 TIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422
+ KLK LD+S N+L + A + +++ NN
Sbjct: 187 QVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 74/185 (40%), Gaps = 42/185 (22%)
Query: 246 SIAGIKTLKKLDIHSNQLINL--PDSFGDLINL--IDLDLHANRLKTLPATFGNLINLMN 301
+ +G L+K++I N ++ + D F +L L I ++ N L P F NL NL
Sbjct: 49 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108
Query: 302 LDLGSNEFTHLPDTIGCLTSLKTL----------NVETNELEDLPY-------------T 338
L + + HLPD + K L +E N L +
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168
Query: 339 IGNCS----SLTELRL-DFNQLRALPE-----AIGKLECLEILTLHYNRIKGLPTT-IGN 387
I NC+ L EL L D N L LP A G + IL + RI LP+ + N
Sbjct: 169 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV----ILDISRTRIHSLPSYGLEN 224
Query: 388 LTKLK 392
L KL+
Sbjct: 225 LKKLR 229
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 33/128 (25%)
Query: 218 EWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLP--------- 267
EW P +L ++ L LS N + + S + + L+ LD+ SN L L
Sbjct: 57 EWTPT---RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113
Query: 268 ----------------DSFGDLINLIDLDLHANRLKTLPATF---GN-LINLMNLDLGSN 307
++F D+ L L L N++ P GN L LM LDL SN
Sbjct: 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173
Query: 308 EFTHLPDT 315
+ LP T
Sbjct: 174 KLKKLPLT 181
>pdb|3DFE|A Chain A, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
pdb|3DFE|B Chain B, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
pdb|3DFE|C Chain C, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
pdb|3DFE|D Chain D, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
pdb|3DFE|E Chain E, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
pdb|3DFE|F Chain F, Crystal Structure Of A Putative Pii-like Signaling Protein
(yp_323533.1) From Anabaena Variabilis Atcc 29413 At
2.35 A Resolution
Length = 111
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 184 TEKLSLMKMAAVIENSAKTGAVVLDLRGK 212
TEK+ L K+A +IE + TG V+D GK
Sbjct: 13 TEKVLLKKVAKIIEEAGATGYTVVDTGGK 41
>pdb|1VK0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|E Chain E, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|1VK0|F Chain F, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At5g06450
pdb|2Q3S|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|E Chain E, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
pdb|2Q3S|F Chain F, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At5g06450
Length = 206
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 162 DGLKDLVKSASKKGSFFIGEENTEKLSLMK--MAAVIENSAKTGAVVLDLRGKL 213
D LKDL + + K F+G + E L L++ VI N+ G + + RG L
Sbjct: 95 DNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,421,815
Number of Sequences: 62578
Number of extensions: 491653
Number of successful extensions: 2155
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1592
Number of HSP's gapped (non-prelim): 343
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)