Query 012082
Match_columns 471
No_of_seqs 418 out of 4318
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:26:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0444 Cytoskeletal regulator 99.9 1.6E-28 3.4E-33 243.7 -3.9 269 197-468 73-370 (1255)
2 PLN00113 leucine-rich repeat r 99.9 1.6E-24 3.4E-29 244.3 21.1 264 200-468 91-364 (968)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-24 2.8E-29 245.0 19.4 266 201-468 139-436 (968)
4 KOG0444 Cytoskeletal regulator 99.9 4.2E-27 9.2E-32 233.6 -3.2 244 202-450 126-375 (1255)
5 KOG0472 Leucine-rich repeat pr 99.9 3.3E-26 7.1E-31 217.2 -10.5 247 219-469 59-306 (565)
6 KOG4194 Membrane glycoprotein 99.9 5.1E-24 1.1E-28 210.6 2.9 241 229-469 174-425 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 1.1E-24 2.5E-29 206.8 -2.7 261 202-469 183-537 (565)
8 PLN03210 Resistant to P. syrin 99.9 3.9E-20 8.5E-25 210.1 29.1 260 201-468 557-877 (1153)
9 KOG4194 Membrane glycoprotein 99.9 8.6E-23 1.9E-27 202.0 6.0 263 202-468 78-349 (873)
10 PRK15370 E3 ubiquitin-protein 99.8 7.2E-21 1.6E-25 203.6 15.1 246 199-469 175-424 (754)
11 PRK15387 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 193.0 15.6 240 199-469 198-454 (788)
12 PLN03210 Resistant to P. syrin 99.8 7.4E-19 1.6E-23 199.7 20.1 256 202-469 589-902 (1153)
13 PRK15370 E3 ubiquitin-protein 99.8 2E-19 4.4E-24 192.5 13.2 219 228-468 178-396 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.4E-23 186.0 13.9 227 203-458 223-467 (788)
15 KOG0618 Serine/threonine phosp 99.8 1.8E-20 3.9E-25 194.6 -1.2 81 204-287 47-127 (1081)
16 KOG4658 Apoptotic ATPase [Sign 99.8 3.4E-19 7.3E-24 193.6 8.5 218 114-350 437-675 (889)
17 KOG0618 Serine/threonine phosp 99.8 4.2E-20 9.1E-25 191.9 -2.5 238 228-469 241-485 (1081)
18 KOG0617 Ras suppressor protein 99.7 2E-20 4.3E-25 159.0 -5.6 163 225-387 30-194 (264)
19 KOG0617 Ras suppressor protein 99.7 2.1E-20 4.6E-25 158.9 -6.1 165 247-411 29-195 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-17 2.3E-22 164.8 6.5 248 222-469 17-316 (319)
21 cd00116 LRR_RI Leucine-rich re 99.6 3E-16 6.4E-21 154.5 7.6 238 232-469 2-287 (319)
22 KOG0532 Leucine-rich repeat (L 99.5 1.9E-16 4.1E-21 157.2 -3.7 195 226-422 73-270 (722)
23 KOG4237 Extracellular matrix p 99.5 4.1E-16 8.9E-21 148.7 -4.0 237 230-468 69-354 (498)
24 COG4886 Leucine-rich repeat (L 99.4 8.2E-14 1.8E-18 141.5 6.0 180 224-404 112-292 (394)
25 KOG0532 Leucine-rich repeat (L 99.4 5.3E-15 1.2E-19 147.0 -3.2 211 233-447 55-270 (722)
26 KOG4237 Extracellular matrix p 99.4 1.9E-14 4.2E-19 137.3 -0.7 243 202-447 67-356 (498)
27 COG4886 Leucine-rich repeat (L 99.4 2.5E-13 5.3E-18 138.0 7.1 197 255-454 97-294 (394)
28 KOG1259 Nischarin, modulator o 99.3 9.1E-13 2E-17 121.9 1.6 217 247-468 178-407 (490)
29 KOG1259 Nischarin, modulator o 99.3 6.7E-13 1.5E-17 122.7 0.3 182 219-402 205-412 (490)
30 KOG4658 Apoptotic ATPase [Sign 99.3 3.4E-12 7.3E-17 139.4 5.6 221 200-422 543-780 (889)
31 KOG3207 Beta-tubulin folding c 99.3 9.1E-13 2E-17 127.6 0.1 202 221-422 114-336 (505)
32 KOG3207 Beta-tubulin folding c 99.2 1.5E-12 3.3E-17 126.1 0.3 221 179-402 100-339 (505)
33 KOG1909 Ran GTPase-activating 99.2 3.8E-12 8.3E-17 120.3 2.5 229 222-450 24-311 (382)
34 KOG1909 Ran GTPase-activating 99.2 2.6E-12 5.6E-17 121.4 1.0 226 199-424 27-310 (382)
35 PF14580 LRR_9: Leucine-rich r 99.1 4.8E-11 1E-15 105.7 5.5 101 320-422 19-123 (175)
36 PF14580 LRR_9: Leucine-rich r 99.1 2.9E-11 6.3E-16 107.1 3.5 103 229-333 20-126 (175)
37 KOG0531 Protein phosphatase 1, 99.0 3.5E-11 7.6E-16 122.9 -2.9 222 224-450 91-318 (414)
38 KOG0531 Protein phosphatase 1, 98.9 8E-11 1.7E-15 120.2 -2.7 218 226-450 70-290 (414)
39 KOG2120 SCF ubiquitin ligase, 98.8 3.9E-10 8.6E-15 104.6 -3.6 172 276-447 187-373 (419)
40 KOG1859 Leucine-rich repeat pr 98.7 2.2E-10 4.7E-15 117.4 -9.4 178 221-403 102-293 (1096)
41 KOG2982 Uncharacterized conser 98.6 1.6E-08 3.4E-13 94.1 1.7 197 206-402 49-262 (418)
42 PLN03150 hypothetical protein; 98.5 2.5E-07 5.5E-12 99.1 9.6 101 230-330 420-525 (623)
43 KOG2982 Uncharacterized conser 98.5 3.2E-08 7E-13 92.0 1.6 82 249-330 69-156 (418)
44 KOG1859 Leucine-rich repeat pr 98.5 7.1E-10 1.5E-14 113.7 -10.2 126 322-450 166-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.5 3.7E-09 7.9E-14 98.3 -4.7 172 252-423 186-374 (419)
46 KOG4341 F-box protein containi 98.5 4.6E-09 1E-13 101.8 -5.1 150 318-467 292-459 (483)
47 COG5238 RNA1 Ran GTPase-activa 98.5 6.1E-08 1.3E-12 89.1 2.4 184 270-453 88-319 (388)
48 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 69.1 3.0 57 252-308 2-60 (61)
49 PLN03150 hypothetical protein; 98.5 4.2E-07 9.2E-12 97.4 8.6 102 276-377 420-526 (623)
50 KOG4341 F-box protein containi 98.4 1.1E-08 2.3E-13 99.3 -3.6 268 202-469 138-435 (483)
51 PF13855 LRR_8: Leucine rich r 98.4 2E-07 4.4E-12 67.7 3.0 59 228-286 1-61 (61)
52 COG5238 RNA1 Ran GTPase-activa 98.4 3.3E-07 7.2E-12 84.4 4.9 161 290-450 85-285 (388)
53 KOG4579 Leucine-rich repeat (L 98.3 3.8E-08 8.3E-13 81.5 -3.2 110 229-338 28-141 (177)
54 PRK15386 type III secretion pr 98.2 3.5E-06 7.7E-11 83.8 7.9 133 247-400 48-188 (426)
55 PRK15386 type III secretion pr 98.2 5.3E-06 1.2E-10 82.6 9.1 133 224-377 48-188 (426)
56 KOG3665 ZYG-1-like serine/thre 98.2 1E-06 2.2E-11 94.5 4.2 136 197-333 117-263 (699)
57 KOG4579 Leucine-rich repeat (L 98.2 7.3E-08 1.6E-12 79.9 -4.0 106 277-382 30-139 (177)
58 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.2E-11 93.3 2.6 80 250-330 147-230 (699)
59 PF12799 LRR_4: Leucine Rich r 98.0 7.2E-06 1.6E-10 55.0 4.2 37 252-288 2-38 (44)
60 PF12799 LRR_4: Leucine Rich r 98.0 7.6E-06 1.7E-10 54.9 4.1 40 274-313 1-40 (44)
61 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.2E-10 70.7 5.8 101 252-353 43-150 (233)
62 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 4.9E-10 69.6 5.7 58 275-333 43-101 (233)
63 KOG2123 Uncharacterized conser 97.3 1.5E-05 3.3E-10 73.9 -3.1 100 342-443 18-123 (388)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 65.7 1.8 59 343-402 43-104 (260)
65 KOG2739 Leucine-rich acidic nu 97.0 0.0002 4.2E-09 66.3 0.9 38 272-309 63-103 (260)
66 KOG1947 Leucine rich repeat pr 97.0 0.0001 2.2E-09 76.6 -2.0 105 203-307 189-305 (482)
67 KOG2123 Uncharacterized conser 96.8 0.00011 2.5E-09 68.2 -2.7 99 200-303 17-123 (388)
68 KOG1947 Leucine rich repeat pr 96.6 0.0005 1.1E-08 71.4 -0.3 179 227-414 187-389 (482)
69 KOG4308 LRR-containing protein 96.2 4.9E-05 1.1E-09 78.3 -10.4 163 218-380 105-304 (478)
70 KOG4308 LRR-containing protein 95.6 0.00013 2.9E-09 75.2 -9.9 194 229-422 88-328 (478)
71 PF13306 LRR_5: Leucine rich r 95.6 0.043 9.3E-07 45.8 7.1 9 227-235 11-19 (129)
72 PF13306 LRR_5: Leucine rich r 95.6 0.042 9E-07 45.8 6.8 117 246-368 7-128 (129)
73 PF00560 LRR_1: Leucine Rich R 95.5 0.0045 9.7E-08 34.6 0.3 22 438-459 1-22 (22)
74 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.5E-07 33.9 0.6 17 276-292 2-18 (22)
75 KOG0473 Leucine-rich repeat pr 95.2 0.00041 8.9E-09 63.0 -7.0 87 224-310 38-124 (326)
76 KOG0473 Leucine-rich repeat pr 93.8 0.0017 3.6E-08 59.2 -6.5 88 246-333 37-124 (326)
77 PF13504 LRR_7: Leucine rich r 93.7 0.038 8.3E-07 28.7 1.2 17 437-453 1-17 (17)
78 PF13504 LRR_7: Leucine rich r 93.5 0.053 1.2E-06 28.1 1.5 15 275-289 2-16 (17)
79 smart00369 LRR_TYP Leucine-ric 88.8 0.38 8.2E-06 27.8 2.1 19 274-292 2-20 (26)
80 smart00370 LRR Leucine-rich re 88.8 0.38 8.2E-06 27.8 2.1 19 274-292 2-20 (26)
81 smart00370 LRR Leucine-rich re 88.2 0.42 9.1E-06 27.6 2.0 20 436-455 1-20 (26)
82 smart00369 LRR_TYP Leucine-ric 88.2 0.42 9.1E-06 27.6 2.0 20 436-455 1-20 (26)
83 KOG3864 Uncharacterized conser 86.9 0.2 4.4E-06 45.0 0.1 80 367-446 102-185 (221)
84 KOG3864 Uncharacterized conser 84.2 0.22 4.9E-06 44.7 -0.9 78 344-421 102-185 (221)
85 smart00364 LRR_BAC Leucine-ric 78.7 1.1 2.5E-05 26.0 1.0 18 437-454 2-19 (26)
86 PF10041 DUF2277: Uncharacteri 73.4 3.8 8.2E-05 30.4 2.8 28 15-42 44-77 (78)
87 KOG3763 mRNA export factor TAP 65.3 4.2 9E-05 42.2 2.2 61 363-424 215-282 (585)
88 PF13516 LRR_6: Leucine Rich r 63.4 3 6.5E-05 23.4 0.4 13 274-286 2-14 (24)
89 smart00365 LRR_SD22 Leucine-ri 60.6 6.7 0.00014 22.8 1.6 12 275-286 3-14 (26)
90 COG5552 Uncharacterized conser 59.5 13 0.00028 27.4 3.2 8 16-23 45-52 (88)
91 COG4566 TtrR Response regulato 59.3 13 0.00028 33.3 3.8 60 13-74 109-168 (202)
92 COG5661 Predicted secreted Zn- 56.5 23 0.00049 31.3 4.8 63 22-84 142-208 (210)
93 COG1915 Uncharacterized conser 55.3 8.6 0.00019 36.7 2.2 38 4-41 38-83 (415)
94 KOG4339 RPEL repeat-containing 48.6 19 0.00041 37.0 3.5 41 21-61 410-451 (533)
95 KOG4242 Predicted myosin-I-bin 46.5 98 0.0021 31.9 8.1 60 390-449 414-480 (553)
96 smart00368 LRR_RI Leucine rich 46.4 16 0.00034 21.5 1.6 14 437-450 2-15 (28)
97 PLN03075 nicotianamine synthas 42.0 38 0.00082 32.8 4.4 75 16-102 8-89 (296)
98 KOG3763 mRNA export factor TAP 41.7 16 0.00036 38.0 2.0 63 201-264 217-283 (585)
99 PF11791 Aconitase_B_N: Aconit 40.5 38 0.00082 29.1 3.6 47 25-71 9-56 (154)
100 KOG1086 Cytosolic sorting prot 34.7 54 0.0012 33.1 4.2 36 23-62 178-213 (594)
101 PF14837 INTS5_N: Integrator c 33.1 85 0.0018 28.8 4.9 66 15-88 23-95 (213)
102 PRK12334 nucleoside triphospha 32.9 1.3E+02 0.0029 28.8 6.4 28 10-38 58-85 (277)
103 PF10264 Stork_head: Winged he 31.6 1.1E+02 0.0023 23.4 4.4 37 10-47 26-62 (80)
104 KOG0027 Calmodulin and related 30.4 2.3E+02 0.005 24.0 7.2 29 19-47 26-54 (151)
105 smart00367 LRR_CC Leucine-rich 29.0 40 0.00086 19.1 1.5 11 297-307 2-12 (26)
106 smart00707 RPEL Repeat in Dros 27.3 42 0.00091 19.6 1.3 15 27-41 4-18 (26)
107 PF13559 DUF4129: Domain of un 27.0 98 0.0021 22.2 3.7 33 17-49 37-72 (72)
108 KOG4242 Predicted myosin-I-bin 25.9 4.2E+02 0.009 27.6 8.7 55 368-422 415-478 (553)
109 PF10642 Tom5: Mitochondrial i 25.5 61 0.0013 22.1 2.0 15 31-45 6-20 (49)
110 COG4847 Uncharacterized protei 23.9 1.2E+02 0.0026 23.7 3.5 55 28-82 37-91 (103)
111 COG1460 Uncharacterized protei 23.3 3.2E+02 0.0068 22.3 6.0 54 15-77 52-105 (114)
112 cd05027 S-100B S-100B: S-100B 23.2 1E+02 0.0022 23.7 3.3 27 20-46 29-60 (88)
113 PF08944 p47_phox_C: NADPH oxi 22.6 38 0.00082 23.9 0.6 12 28-39 29-40 (58)
114 PF08289 Flu_M1_C: Influenza M 22.5 2.2E+02 0.0047 21.7 4.5 23 62-84 65-87 (95)
115 PF12269 zf-CpG_bind_C: CpG bi 21.6 1.3E+02 0.0029 28.0 4.1 34 91-124 37-70 (236)
116 KOG0030 Myosin essential light 21.6 58 0.0013 27.6 1.6 24 21-44 108-131 (152)
117 PF13887 MRF_C1: Myelin gene r 21.5 53 0.0011 20.6 1.0 23 17-41 13-35 (36)
118 PF12205 GIT1_C: G protein-cou 20.2 1.8E+02 0.004 24.1 4.3 36 16-54 47-82 (123)
No 1
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.6e-28 Score=243.71 Aligned_cols=269 Identities=28% Similarity=0.428 Sum_probs=177.0
Q ss_pred hhccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchh-hcCCCC
Q 012082 197 ENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FGDLIN 275 (471)
Q Consensus 197 ~~~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~ 275 (471)
+.+....+|++++..+.... ..+|..+..+..|++|||++|.+...|..+.+.+++-+|+|++|+|..+|.+ +-++..
T Consensus 73 ELs~Lp~LRsv~~R~N~LKn-sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 73 ELSDLPRLRSVIVRDNNLKN-SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD 151 (1255)
T ss_pred hhccchhhHHHhhhcccccc-CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence 34456667777776655443 3568888899999999999999999998888889999999999999999866 567888
Q ss_pred CcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCC--------------------------cCccccCCCCCCCEEEeeC
Q 012082 276 LIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFT--------------------------HLPDTIGCLTSLKTLNVET 329 (471)
Q Consensus 276 L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~--------------------------~l~~~l~~l~~L~~L~l~~ 329 (471)
|-+|||++|++..+|+.+..+.+|++|++++|.+. .+|.++..+.+|..++++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 88999999999999999999999999999988653 2333444444455555555
Q ss_pred CCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCC--cchhh
Q 012082 330 NELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE--SITEN 407 (471)
Q Consensus 330 ~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~ 407 (471)
|++..+|..+.++++|+.|++++|.++.+.-..+...+|++|+++.|+++.+|..+.++++|+.|.+.+|.+. .+|+.
T Consensus 232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccc
Confidence 5555555555555555555555555554444444455555555555555555555555555555555555443 45555
Q ss_pred hcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEcc
Q 012082 408 LCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 408 l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~ 468 (471)
++.+.+|+.+...+| .+.-+|..++.|+.|+.|.|+.|.+..+|+.+.-|+.|++|++.
T Consensus 312 IGKL~~Levf~aanN--~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANN--KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred hhhhhhhHHHHhhcc--ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeecc
Confidence 555555555555555 44555555555666666666666666666666666666666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.6e-24 Score=244.25 Aligned_cols=264 Identities=30% Similarity=0.455 Sum_probs=188.0
Q ss_pred cCCCcEEEEecCCCCCcccccchhc-CCCCCccEEEeeCCCCCC-CchhhcCCCCccEEEeecCCCC-CcchhhcCCCCC
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSI-GKLKDVTELNLSENRIMA-LPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINL 276 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~-~~l~~L~~L~L~~~~~~~-l~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L 276 (471)
....++.|+++++.... .+|..+ ..+++|++|++++|.+.. +|. +.+++|++|++++|.+. .+|..++++++|
T Consensus 91 ~l~~L~~L~Ls~n~~~~--~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 91 RLPYIQTINLSNNQLSG--PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCCCCEEECCCCccCC--cCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 56788999998875432 345544 378888888888887763 332 45677888888877776 567777788888
Q ss_pred cEEEeeCCCCC-CcchhhhCCCCCcEEecCCCCCC-cCccccCCCCCCCEEEeeCCCCC-CcccccCCCCCCcEEEccCC
Q 012082 277 IDLDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFN 353 (471)
Q Consensus 277 ~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~ 353 (471)
++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 88888887765 56777778888888888877766 56777777788888888777766 45667777777788877777
Q ss_pred CCC-cchhhhCCCCCCcEEEeecCCCCC-CchhccCCCCCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCCCCccc
Q 012082 354 QLR-ALPEAIGKLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFADLRALP 430 (471)
Q Consensus 354 ~l~-~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp 430 (471)
.+. .+|..++.+++|+.|++++|.+.+ +|..+.++++|+.|++++|.+. .+|..+..+++|+.|++++|... ..+|
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~-~~~~ 325 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT-GKIP 325 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC-CcCC
Confidence 764 566667777777777777777665 6667777777777777777765 45566666777777777766322 3456
Q ss_pred hhccCCCCccEEEeecCCCC-cCchhhhcCCCCcEEEcc
Q 012082 431 RSIGNLEMLEQLDISDDQIR-ILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 431 ~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~l~ 468 (471)
.+++.+++|+.|++++|++. .+|..++.+++|+.|++.
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 66667777777777777666 566667777777776664
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=244.96 Aligned_cols=266 Identities=29% Similarity=0.454 Sum_probs=159.1
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCC-CCchhhcCCCCccEEEeecCCCC-CcchhhcCCCCCcE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLID 278 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 278 (471)
..+++.|+++++... ..+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++
T Consensus 139 l~~L~~L~Ls~n~~~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLS--GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCccc--ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 345666666655432 134555666677777777766654 45666666677777777766655 45666666777777
Q ss_pred EEeeCCCCC-CcchhhhCCCCCcEEecCCCCCC-cCccccCCCCCCCEEEeeCCCCC-CcccccCCCCCCcEEEccCCCC
Q 012082 279 LDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQL 355 (471)
Q Consensus 279 L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l 355 (471)
|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|+.|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 777666665 45666666677777777666655 45666666666666666666554 3455566666666666666665
Q ss_pred C-cchhhhCCCCCCcEEEeecCCCCC-CchhccCCCCCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCC-------
Q 012082 356 R-ALPEAIGKLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFAD------- 425 (471)
Q Consensus 356 ~-~l~~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~------- 425 (471)
. .+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 3 445555666666666666666554 4555556666666666666554 34455555555555555555211
Q ss_pred ----------------CCccchhccCCCCccEEEeecCCCC-cCchhhhcCCCCcEEEcc
Q 012082 426 ----------------LRALPRSIGNLEMLEQLDISDDQIR-ILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 426 ----------------l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~l~ 468 (471)
...+|.+++.+++|+.|++++|+++ .+|..+..++.|+.|++.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 436 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence 1234444555555666666655555 455556666666666554
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4.2e-27 Score=233.61 Aligned_cols=244 Identities=31% Similarity=0.484 Sum_probs=204.1
Q ss_pred CCcEEEEecCCCCCcccccch-hcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPV-SIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L 279 (471)
.+..+|+++.+.++ .+|. .+-++..|-.|||++|.+..+|..+..+.+|++|.|++|.+... ...+..++.|++|
T Consensus 126 Kn~iVLNLS~N~Ie---tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE---TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEcccCccc---cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 45566676666443 3343 34466677777777777777777777777777777777766533 1334456667777
Q ss_pred EeeCCCCC--CcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCc
Q 012082 280 DLHANRLK--TLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRA 357 (471)
Q Consensus 280 ~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~ 357 (471)
.+++++-+ .+|.++..+.+|+.+|++.|++..+|+.+-++.+|+.|++++|.++.+....+...+|++|+++.|+++.
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV 282 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc
Confidence 77776433 7899999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred chhhhCCCCCCcEEEeecCCCC--CCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccC
Q 012082 358 LPEAIGKLECLEILTLHYNRIK--GLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGN 435 (471)
Q Consensus 358 l~~~l~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~ 435 (471)
+|+++.++++|++|.+.+|+++ ++|+.++++.+|+.+...+|.+.-+|+.++.|..|++|.|+.| .+-.+|..+.-
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N--rLiTLPeaIHl 360 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN--RLITLPEAIHL 360 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc--ceeechhhhhh
Confidence 9999999999999999999754 5999999999999999999999999999999999999999998 67899999999
Q ss_pred CCCccEEEeecCCCC
Q 012082 436 LEMLEQLDISDDQIR 450 (471)
Q Consensus 436 l~~L~~L~L~~n~l~ 450 (471)
++.|+.||+.+|.=-
T Consensus 361 L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 361 LPDLKVLDLRENPNL 375 (1255)
T ss_pred cCCcceeeccCCcCc
Confidence 999999999987433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=3.3e-26 Score=217.17 Aligned_cols=247 Identities=35% Similarity=0.539 Sum_probs=213.4
Q ss_pred ccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCC
Q 012082 219 WLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLIN 298 (471)
Q Consensus 219 ~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~ 298 (471)
.+...+.++..+.+|++.+|.+..+|.+++.+..+..|+.+.|.+..+|..++.+..|..+++++|.+..+|++++.+-.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 34456777888888999999888888888888888888999888888888888899999999999988888888888888
Q ss_pred CcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCC
Q 012082 299 LMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRI 378 (471)
Q Consensus 299 L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l 378 (471)
|..++..+|++..+|.+++.+.+|..|++.+|.+..+|...-+++.|++|+...|-++.+|+.++.+.+|..|++..|++
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 99999888889899988888888888899888888887777678889999888888888998889899999999999988
Q ss_pred CCCchhccCCCCCcEEEeeCCCCCcchhhhc-CCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhh
Q 012082 379 KGLPTTIGNLTKLKELDVSFNELESITENLC-FAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFR 457 (471)
Q Consensus 379 ~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~-~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 457 (471)
..+| .|.+|+.|++|.++.|.+..+|...+ +++++..|+|.+| .++.+|..++-+.+|.+||+++|.++.+|..++
T Consensus 219 ~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 219 RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccc
Confidence 8887 78888889999998888888887655 7888999999888 778889888888889999999999999998888
Q ss_pred cCCCCcEEEccC
Q 012082 458 LLSKLRVFRAMR 469 (471)
Q Consensus 458 ~L~~L~~L~l~~ 469 (471)
++ +|+.|-+.|
T Consensus 296 nl-hL~~L~leG 306 (565)
T KOG0472|consen 296 NL-HLKFLALEG 306 (565)
T ss_pred cc-eeeehhhcC
Confidence 88 888776644
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.1e-24 Score=210.59 Aligned_cols=241 Identities=29% Similarity=0.436 Sum_probs=131.2
Q ss_pred CccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecC
Q 012082 229 DVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLG 305 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~ 305 (471)
++++|+|++|.|+.+. ..|.++.+|..|.|++|.++.+|. .|.+|++|+.|+|..|+|... .-.|.++++|+.|.+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 4455555555554432 334444455555555555555442 233455555555555544433 2234445555555555
Q ss_pred CCCCCcCccc-cCCCCCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCCCc
Q 012082 306 SNEFTHLPDT-IGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGLP 382 (471)
Q Consensus 306 ~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~ 382 (471)
.|++..+.++ +..+.++++|++..|.+..+. .++.+++.|+.|++++|.+..+ ++....+++|+.|+++.|+++.++
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence 5555544332 345566666666666665542 4456666666666666666554 334455666667777766666643
Q ss_pred -hhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCC--CCccchhccCCCCccEEEeecCCCCcCc-hhhh
Q 012082 383 -TTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFAD--LRALPRSIGNLEMLEQLDISDDQIRILP-DSFR 457 (471)
Q Consensus 383 -~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 457 (471)
..+..++.|+.|.|+.|.+..+-+ .+.++.+|++|+|+.|... ++.-...+..+++|+.|++.+|+++.+| .+|.
T Consensus 334 ~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc
Confidence 455566666666666666655432 3445566666666666211 1111123445666667777777666666 4566
Q ss_pred cCCCCcEEEccC
Q 012082 458 LLSKLRVFRAMR 469 (471)
Q Consensus 458 ~L~~L~~L~l~~ 469 (471)
+++.|+.|++.+
T Consensus 414 gl~~LE~LdL~~ 425 (873)
T KOG4194|consen 414 GLEALEHLDLGD 425 (873)
T ss_pred cCcccceecCCC
Confidence 666666666643
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.1e-24 Score=206.77 Aligned_cols=261 Identities=30% Similarity=0.444 Sum_probs=178.9
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhc-CCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFG-DLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~ 280 (471)
..+..+|...+ ..+.+|..++.+.+|.-|++..|.+..+| .|.+|..|..|.+..|.|..+|...+ ++++|.+||
T Consensus 183 ~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 183 KRLKHLDCNSN---LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHhcccchh---hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeee
Confidence 34455555544 34556777888888888888888888887 67888888888888888888887665 788889999
Q ss_pred eeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcc------------------------
Q 012082 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP------------------------ 336 (471)
Q Consensus 281 L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~------------------------ 336 (471)
++.|+++++|+.++.+.+|.+||+++|.++.+|..+|++ .|+.|.+.||.+..+-
T Consensus 259 LRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 259 LRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred ccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 999999999998888888999999999999888888888 8888887777542110
Q ss_pred ------------------cccCCCCCCcEEEccCCCCC------------------------------------------
Q 012082 337 ------------------YTIGNCSSLTELRLDFNQLR------------------------------------------ 356 (471)
Q Consensus 337 ------------------~~l~~l~~L~~L~l~~~~l~------------------------------------------ 356 (471)
.......+.+.|++++-+++
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 00111223333333332222
Q ss_pred --------cchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCc
Q 012082 357 --------ALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRA 428 (471)
Q Consensus 357 --------~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~ 428 (471)
.+|..++.+++|..|++++|-+.++|..++.+-.|+.|++++|.|..+|..+..+..++.+-.++| .+..
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~n--qi~~ 495 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNN--QIGS 495 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccc--cccc
Confidence 223344555555556666555555565555555566666666655555554444444444444444 4455
Q ss_pred cchh-ccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 429 LPRS-IGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 429 lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++.. +.++.+|..||+.+|.+..+|+.++++.+|+.|.+++
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecC
Confidence 5544 7778899999999999999999999999999998876
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.9e-20 Score=210.08 Aligned_cols=260 Identities=27% Similarity=0.347 Sum_probs=173.3
Q ss_pred CCCcEEEEecCCCCCc---c-cccchhcCCCC-CccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCC
Q 012082 201 KTGAVVLDLRGKLTDQ---I-EWLPVSIGKLK-DVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLIN 275 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~---~-~~l~~~~~~l~-~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~ 275 (471)
..+++.|.+.....+. + -.+|..+..++ .|+.|++.++.+..+|..+ ...+|++|++.++.+..+|..+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 3456666665432211 1 12445555554 6899999999888888877 468999999999999999988999999
Q ss_pred CcEEEeeCC-CCCCcchhhhCCCCCcEEecCCC-CCCcCccccCCCCCCCEEEeeCC-CCCCcccccCCCCCCcEEEccC
Q 012082 276 LIDLDLHAN-RLKTLPATFGNLINLMNLDLGSN-EFTHLPDTIGCLTSLKTLNVETN-ELEDLPYTIGNCSSLTELRLDF 352 (471)
Q Consensus 276 L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~ 352 (471)
|++|+|+++ .+..+|. ++.+++|++|++++| .+..+|..++.+++|+.|++++| .+..+|..+ ++++|+.|++++
T Consensus 636 Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 999999987 4667764 788999999999998 56789999999999999999986 466777654 566777777666
Q ss_pred CC---------------------CCcchhhh------------------------------CCCCCCcEEEeecCC-CCC
Q 012082 353 NQ---------------------LRALPEAI------------------------------GKLECLEILTLHYNR-IKG 380 (471)
Q Consensus 353 ~~---------------------l~~l~~~l------------------------------~~l~~L~~L~l~~~~-l~~ 380 (471)
|. ++.+|..+ ...++|+.|++++|. +..
T Consensus 714 c~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 714 CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred CCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 53 22233211 011345556666553 334
Q ss_pred CchhccCCCCCcEEEeeCCC-CCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcC
Q 012082 381 LPTTIGNLTKLKELDVSFNE-LESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLL 459 (471)
Q Consensus 381 l~~~l~~l~~L~~L~L~~n~-l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L 459 (471)
+|..++++++|+.|++++|. +..+|... .+++|++|++++|. .+..+|.. .++|+.|+|++|.++.+|.++..+
T Consensus 794 lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~-~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l 868 (1153)
T PLN03210 794 LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS-RLRTFPDI---STNISDLNLSRTGIEEVPWWIEKF 868 (1153)
T ss_pred cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC-cccccccc---ccccCEeECCCCCCccChHHHhcC
Confidence 67777777777777777663 44555443 45566666666542 22333321 245666666666666666666666
Q ss_pred CCCcEEEcc
Q 012082 460 SKLRVFRAM 468 (471)
Q Consensus 460 ~~L~~L~l~ 468 (471)
++|+.|++.
T Consensus 869 ~~L~~L~L~ 877 (1153)
T PLN03210 869 SNLSFLDMN 877 (1153)
T ss_pred CCCCEEECC
Confidence 666666554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=8.6e-23 Score=201.98 Aligned_cols=263 Identities=28% Similarity=0.382 Sum_probs=179.4
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~ 280 (471)
...+.|+++++....++ +..+.++++|+.+++..|.+..+|....-..||+.|+|.+|.|.++ .+.+..++.|++||
T Consensus 78 ~~t~~LdlsnNkl~~id--~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHID--FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCc--HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 34566788777665543 4556788888888888888888887777777788888888888876 35577788888888
Q ss_pred eeCCCCCCcch-hhhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCc
Q 012082 281 LHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRA 357 (471)
Q Consensus 281 L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~ 357 (471)
|+.|.|+.+|. ++..-.++++|+|++|.|+.+. ..+..+.+|.+|.++.|.++.+|.. +.+++.|+.|++..|.++.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 88888887764 4666678888888888888663 4566777888888888888888744 4458888888888877764
Q ss_pred c-hhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCcEEEccCCcCCCCcc-chhc
Q 012082 358 L-PEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRAL-PRSI 433 (471)
Q Consensus 358 l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~l-p~~l 433 (471)
+ .-.+..+++|+.|.+..|++..+. -.+..+.++++|+|..|++..+. .++.++..|+.|+|++|.+. .+ ++..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~--rih~d~W 313 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ--RIHIDSW 313 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh--eeecchh
Confidence 4 224556667777777777666643 34555666666666666666553 35566666666666666322 22 2334
Q ss_pred cCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEcc
Q 012082 434 GNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAM 468 (471)
Q Consensus 434 ~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~ 468 (471)
..+++|+.|+|++|+++.++ .+|..|..|++|++.
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 45566666666666666554 456666666666554
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.85 E-value=7.2e-21 Score=203.59 Aligned_cols=246 Identities=28% Similarity=0.421 Sum_probs=197.4
Q ss_pred ccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcE
Q 012082 199 SAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLID 278 (471)
Q Consensus 199 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 278 (471)
+...+...|++.+.... .+|..+ .+.|+.|++++|.+..+|..+. .+|++|++++|.++.+|..+. .+|+.
T Consensus 175 Cl~~~~~~L~L~~~~Lt---sLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 175 CLKNNKTELRLKILGLT---TIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred hcccCceEEEeCCCCcC---cCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccE
Confidence 44456778888876443 345443 2479999999999999987665 589999999999999987664 47999
Q ss_pred EEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcc
Q 012082 279 LDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRAL 358 (471)
Q Consensus 279 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l 358 (471)
|+|++|.+..+|..+. .+|+.|++++|+++.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.+
T Consensus 246 L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 246 MELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred EECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccC
Confidence 9999999999988764 589999999999998887664 589999999999998886543 4789999999999888
Q ss_pred hhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCC
Q 012082 359 PEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEM 438 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~ 438 (471)
|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+..+|..+ +++|+.|++++| .+..+|..+. .+
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N--~Lt~LP~~l~--~s 389 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRN--ALTNLPENLP--AA 389 (754)
T ss_pred Ccccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCC--cCCCCCHhHH--HH
Confidence 76543 689999999999998887653 78999999999998888755 478999999998 5678887664 36
Q ss_pred ccEEEeecCCCCcCchhhhc----CCCCcEEEccC
Q 012082 439 LEQLDISDDQIRILPDSFRL----LSKLRVFRAMR 469 (471)
Q Consensus 439 L~~L~L~~n~l~~lp~~l~~----L~~L~~L~l~~ 469 (471)
|+.|++++|++..+|..+.. ++.+..|++.+
T Consensus 390 L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 390 LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeC
Confidence 99999999999987765544 47777777654
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.3e-19 Score=192.97 Aligned_cols=240 Identities=32% Similarity=0.362 Sum_probs=146.0
Q ss_pred ccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcE
Q 012082 199 SAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLID 278 (471)
Q Consensus 199 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 278 (471)
+...+...|+++++... .+|..+. ++|+.|++.+|.++.+|.. .++|++|++++|.++.+|.. .++|+.
T Consensus 198 Cl~~~~~~LdLs~~~Lt---sLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 198 CLNNGNAVLNVGESGLT---TLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred HhcCCCcEEEcCCCCCC---cCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccce
Confidence 33455667788776443 3455443 3678888888888777653 46788888888877777643 345666
Q ss_pred EEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccC-----------------C
Q 012082 279 LDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIG-----------------N 341 (471)
Q Consensus 279 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~-----------------~ 341 (471)
|++++|.+..+|..+ .+|+.|++++|+++.+|.. +++|+.|++++|.+..+|.... -
T Consensus 267 L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l 340 (788)
T PRK15387 267 LSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTL 340 (788)
T ss_pred eeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCcccccccc
Confidence 666666555554322 2344444444444444431 2334444444444443332110 1
Q ss_pred CCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccC
Q 012082 342 CSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGN 421 (471)
Q Consensus 342 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~ 421 (471)
..+|+.|++++|+++.+|.. ..+|..|++++|.++.+|.. .++|+.|++++|.++.+|.. +++|+.|++++
T Consensus 341 p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 341 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSG 411 (788)
T ss_pred ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccC
Confidence 13566677777666666542 23555666666666665543 24677788888877766643 35788888888
Q ss_pred CcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 422 NFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 422 n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
| .+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|++.+
T Consensus 412 N--~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 412 N--RLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred C--cCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCC
Confidence 7 45567653 3467778888888888888888888888888765
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.81 E-value=7.4e-19 Score=199.70 Aligned_cols=256 Identities=24% Similarity=0.364 Sum_probs=185.1
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecC-CCCCcchhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSN-QLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~ 280 (471)
..++.|++.+... ..+|..+ .+.+|+.|++.++.+..++..+..+++|++|+|+++ .+..+|. ++.+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCC---CCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 3578888877533 3445444 456788888888877777777777888888888766 3556654 66777888888
Q ss_pred eeCC-CCCCcchhhhCCCCCcEEecCCC-CCCcCccccCCCCCCCEEEeeC---------------------CCCCCccc
Q 012082 281 LHAN-RLKTLPATFGNLINLMNLDLGSN-EFTHLPDTIGCLTSLKTLNVET---------------------NELEDLPY 337 (471)
Q Consensus 281 L~~~-~l~~lp~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~---------------------~~l~~l~~ 337 (471)
|++| .+..+|..+.++++|++|++++| .+..+|..+ ++++|+.|++++ |.+..+|.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 8776 45677777777788888888776 455666544 445555555444 44444443
Q ss_pred cc------------------------------CCCCCCcEEEccCCC-CCcchhhhCCCCCCcEEEeecC-CCCCCchhc
Q 012082 338 TI------------------------------GNCSSLTELRLDFNQ-LRALPEAIGKLECLEILTLHYN-RIKGLPTTI 385 (471)
Q Consensus 338 ~l------------------------------~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~-~l~~l~~~l 385 (471)
.+ ..+++|+.|++++|. +..+|..++++++|+.|++++| .+..+|..+
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 21 012467777777764 4678889999999999999987 466687665
Q ss_pred cCCCCCcEEEeeCCCC-CcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeec-CCCCcCchhhhcCCCCc
Q 012082 386 GNLTKLKELDVSFNEL-ESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISD-DQIRILPDSFRLLSKLR 463 (471)
Q Consensus 386 ~~l~~L~~L~L~~n~l-~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~l~~L~~L~ 463 (471)
++++|+.|++++|.. ..+|. ...+|+.|+|++| .+..+|.++..+++|+.|+|++ +++..+|..+..+++|+
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n--~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRT--GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred -CccccCEEECCCCCccccccc---cccccCEeECCCC--CCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 789999999999854 34443 2468999999998 6778999999999999999988 67888888888888888
Q ss_pred EEEccC
Q 012082 464 VFRAMR 469 (471)
Q Consensus 464 ~L~l~~ 469 (471)
.+++.+
T Consensus 897 ~L~l~~ 902 (1153)
T PLN03210 897 TVDFSD 902 (1153)
T ss_pred eeecCC
Confidence 887653
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=2e-19 Score=192.52 Aligned_cols=219 Identities=27% Similarity=0.468 Sum_probs=185.2
Q ss_pred CCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCC
Q 012082 228 KDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSN 307 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 307 (471)
.+...|+++++.++.+|..+. .+|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 367899999999999987664 589999999999999998764 599999999999999988664 48999999999
Q ss_pred CCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccC
Q 012082 308 EFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGN 387 (471)
Q Consensus 308 ~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~ 387 (471)
.+..+|..+. .+|+.|++++|++..+|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|.++.+|..+.
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc-
Confidence 9999988765 589999999999998887664 589999999999998887543 579999999999999886553
Q ss_pred CCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEc
Q 012082 388 LTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRA 467 (471)
Q Consensus 388 l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l 467 (471)
++|+.|++++|.++.+|..+ +++|+.|++++| .+..+|..+. ++|+.|+|++|+++.+|..+.. .|+.|++
T Consensus 325 -~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N--~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdL 395 (754)
T PRK15370 325 -PGLKTLEAGENALTSLPASL--PPELQVLDVSKN--QITVLPETLP--PTITTLDVSRNALTNLPENLPA--ALQIMQA 395 (754)
T ss_pred -ccceeccccCCccccCChhh--cCcccEEECCCC--CCCcCChhhc--CCcCEEECCCCcCCCCCHhHHH--HHHHHhh
Confidence 68999999999999988765 479999999999 5667887664 6899999999999999976642 4555554
Q ss_pred c
Q 012082 468 M 468 (471)
Q Consensus 468 ~ 468 (471)
.
T Consensus 396 s 396 (754)
T PRK15370 396 S 396 (754)
T ss_pred c
Confidence 3
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.1e-18 Score=186.00 Aligned_cols=227 Identities=29% Similarity=0.346 Sum_probs=160.0
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEee
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLH 282 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 282 (471)
+++.|++.++.... +|. ..++|++|++++|.+..+|..+ ++|+.|++.+|.+..+|..+ .+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~---LP~---lp~~Lk~LdLs~N~LtsLP~lp---~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPVLP---PGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCC---CCC---CCCCCcEEEecCCccCcccCcc---cccceeeccCCchhhhhhch---hhcCEEECc
Confidence 56778877765443 333 2467888999888888776432 45666666666666555422 334445555
Q ss_pred CCCCCCcchhhhCCCCCcEEecCCCCCCcCccccC-----------------CCCCCCEEEeeCCCCCCcccccCCCCCC
Q 012082 283 ANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIG-----------------CLTSLKTLNVETNELEDLPYTIGNCSSL 345 (471)
Q Consensus 283 ~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~-----------------~l~~L~~L~l~~~~l~~l~~~l~~l~~L 345 (471)
+|+++.+|.. +++|++|++++|+++.+|.... ...+|+.|++++|++..+|.. ..+|
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L 364 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PSEL 364 (788)
T ss_pred CCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Cccc
Confidence 5555544431 2344555555544443322100 124789999999999988853 3578
Q ss_pred cEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCC
Q 012082 346 TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD 425 (471)
Q Consensus 346 ~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~ 425 (471)
+.|++++|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+..+|.. +.+|+.|++++| .
T Consensus 365 ~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N--q 433 (788)
T PRK15387 365 YKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRN--Q 433 (788)
T ss_pred ceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC--c
Confidence 8899999999988864 35799999999999998754 36899999999999988753 457899999999 5
Q ss_pred CCccchhccCCCCccEEEeecCCCC-cCchhhhc
Q 012082 426 LRALPRSIGNLEMLEQLDISDDQIR-ILPDSFRL 458 (471)
Q Consensus 426 l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~ 458 (471)
+..+|..++.+++|+.|+|++|+++ ..+..+..
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 6799999999999999999999998 44455533
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=1.8e-20 Score=194.60 Aligned_cols=81 Identities=36% Similarity=0.520 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeC
Q 012082 204 AVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHA 283 (471)
Q Consensus 204 l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~ 283 (471)
+++|+++++... .+|..+..+.+|+.|+++.|.+..+|..+.++++|++|.|.+|.+..+|.++..+.+|++|+++.
T Consensus 47 L~~l~lsnn~~~---~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS---SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc---cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 556666655332 23444444455555555555555555445555555555555555555555555555555555554
Q ss_pred CCCC
Q 012082 284 NRLK 287 (471)
Q Consensus 284 ~~l~ 287 (471)
|.+.
T Consensus 124 N~f~ 127 (1081)
T KOG0618|consen 124 NHFG 127 (1081)
T ss_pred hccC
Confidence 4444
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.77 E-value=3.4e-19 Score=193.63 Aligned_cols=218 Identities=21% Similarity=0.315 Sum_probs=147.2
Q ss_pred HhhcccccC---CccchhhhhhcccCcchhhhhhhccccceecCCCceEEehhHhHHHHh----hhc-----CCCeeecC
Q 012082 114 RRASGLVSG---DNQMEKVAAFADSGGKIEKECVITDETLVKTREDGEIKKDGLKDLVKS----ASK-----KGSFFIGE 181 (471)
Q Consensus 114 ~~a~~~~~~---~~~~e~~a~~~~~~~y~~eli~r~~~~~~~~~~~g~i~~~~lhdli~~----~s~-----~e~f~~~~ 181 (471)
..|+|++.+ +.+.++.|+ +|+.+|+.+++.+..+.. ++.++|+|||+||+ +++ ++++++..
T Consensus 437 WiaEGfi~~~~~~~~~~d~G~-----~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~ 509 (889)
T KOG4658|consen 437 WIAEGFIDPLDGGETAEDVGY-----DYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSD 509 (889)
T ss_pred HHhccCcCccccccchhcchH-----HHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEEC
Confidence 468888765 455677777 999999999999888776 88999999999994 455 44444433
Q ss_pred C-ccccchhhHHHHHhhhccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCC--CCCCch-hhcCCCCccEEE
Q 012082 182 E-NTEKLSLMKMAAVIENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENR--IMALPS-SIAGIKTLKKLD 257 (471)
Q Consensus 182 ~-~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~--~~~l~~-~i~~l~~L~~L~ 257 (471)
. ..+. ..........|...+.++....+ +. -..++.|++|-+.+|. +..++. .|..++.|++||
T Consensus 510 ~~~~~~--------~~~~~~~~~~rr~s~~~~~~~~~---~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLD 577 (889)
T KOG4658|consen 510 GVGLSE--------IPQVKSWNSVRRMSLMNNKIEHI---AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLD 577 (889)
T ss_pred CcCccc--------cccccchhheeEEEEeccchhhc---cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEE
Confidence 2 1111 11112334555565555433221 11 2234478888888875 455543 467788899999
Q ss_pred eecC-CCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCC-CcCccccCCCCCCCEEEeeCCCCCC-
Q 012082 258 IHSN-QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEF-THLPDTIGCLTSLKTLNVETNELED- 334 (471)
Q Consensus 258 L~~~-~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l-~~l~~~l~~l~~L~~L~l~~~~l~~- 334 (471)
|++| .+..+|.++++|-+|++|+++++.+..+|.++.++..|.+|++..+.. ..+|.....+++|++|.+.......
T Consensus 578 Ls~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~ 657 (889)
T KOG4658|consen 578 LSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND 657 (889)
T ss_pred CCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc
Confidence 9877 677889889889999999999998888899999999999998888743 3445555568888888886654221
Q ss_pred --cccccCCCCCCcEEEc
Q 012082 335 --LPYTIGNCSSLTELRL 350 (471)
Q Consensus 335 --l~~~l~~l~~L~~L~l 350 (471)
....+.++.+|+.+.+
T Consensus 658 ~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhHHhhhcccchhhhee
Confidence 1223344445554444
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=4.2e-20 Score=191.88 Aligned_cols=238 Identities=30% Similarity=0.475 Sum_probs=128.5
Q ss_pred CCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCC
Q 012082 228 KDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSN 307 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 307 (471)
.+|++++++.+.+..+|++++.+.+|+.+....|.++.+|..+...++|++|.+..|.+..+|....++.+|++|++..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 46666777777777677666777777777777776666666666666777777777777666666666777777777777
Q ss_pred CCCcCccccCCCC--CCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCC-cchhhhCCCCCCcEEEeecCCCCCCc-
Q 012082 308 EFTHLPDTIGCLT--SLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLR-ALPEAIGKLECLEILTLHYNRIKGLP- 382 (471)
Q Consensus 308 ~l~~l~~~l~~l~--~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~~l~- 382 (471)
++..+|+.+-.-. .|..|+.+.+.+..+|.. =...+.|+.|++.+|.++ .....+....+|+.|++++|++..+|
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 6666655332111 133344333333333210 011233444444455443 11222444555555555555555554
Q ss_pred hhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC--cCchhhhcCC
Q 012082 383 TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR--ILPDSFRLLS 460 (471)
Q Consensus 383 ~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~ 460 (471)
..+.++..|++|+|++|.++.+|..+..+..|++|...+| .+..+| .+..++.|+.+|++.|+++ .+|..... |
T Consensus 401 s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p 476 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-P 476 (1081)
T ss_pred HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-c
Confidence 3344555555555555555555555555555555555555 344555 4455555555555555555 22322222 4
Q ss_pred CCcEEEccC
Q 012082 461 KLRVFRAMR 469 (471)
Q Consensus 461 ~L~~L~l~~ 469 (471)
+|+.|+++|
T Consensus 477 ~LkyLdlSG 485 (1081)
T KOG0618|consen 477 NLKYLDLSG 485 (1081)
T ss_pred ccceeeccC
Confidence 555555544
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2e-20 Score=159.04 Aligned_cols=163 Identities=36% Similarity=0.548 Sum_probs=106.4
Q ss_pred CCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEec
Q 012082 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304 (471)
Q Consensus 225 ~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 304 (471)
..+.+++.|.+++|.++.+|..+..+.+|+.|++.+|+|+.+|.+++.++.|+.|+++-|++..+|.+|+.++.|+.||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCC--cCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCc
Q 012082 305 GSNEFT--HLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP 382 (471)
Q Consensus 305 ~~~~l~--~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 382 (471)
.+|++. .+|..+.-++.|+.|.++.|.+..+|..++++++|+.|.+..|.+-.+|..++.++.|+.|.+.+|+++-+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 666655 556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhccC
Q 012082 383 TTIGN 387 (471)
Q Consensus 383 ~~l~~ 387 (471)
+.+++
T Consensus 190 pel~~ 194 (264)
T KOG0617|consen 190 PELAN 194 (264)
T ss_pred hhhhh
Confidence 55544
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-20 Score=158.87 Aligned_cols=165 Identities=32% Similarity=0.522 Sum_probs=153.5
Q ss_pred hcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEE
Q 012082 247 IAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLN 326 (471)
Q Consensus 247 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~ 326 (471)
+..+.+++.|-|+.|.++.+|..+..+.+|+.|++.+|+++.+|.+++.+++|++|+++-|.+..+|.++|.++.|+.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCC--CcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcc
Q 012082 327 VETNELE--DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI 404 (471)
Q Consensus 327 l~~~~l~--~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l 404 (471)
+.+|++. .+|..+..++.|+-|++++|.++.+|..++++++|+.|.+..|.+-.+|..++.+..|++|.+.+|.++-+
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence 9999877 67888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcCC
Q 012082 405 TENLCFA 411 (471)
Q Consensus 405 ~~~l~~~ 411 (471)
|..++.+
T Consensus 189 ppel~~l 195 (264)
T KOG0617|consen 189 PPELANL 195 (264)
T ss_pred Chhhhhh
Confidence 8776654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.1e-17 Score=164.75 Aligned_cols=248 Identities=26% Similarity=0.297 Sum_probs=155.7
Q ss_pred hhcCCCCCccEEEeeCCCCC-----CCchhhcCCCCccEEEeecCCCCC-------cchhhcCCCCCcEEEeeCCCCC-C
Q 012082 222 VSIGKLKDVTELNLSENRIM-----ALPSSIAGIKTLKKLDIHSNQLIN-------LPDSFGDLINLIDLDLHANRLK-T 288 (471)
Q Consensus 222 ~~~~~l~~L~~L~L~~~~~~-----~l~~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~l~-~ 288 (471)
..+..+..|+.|+++++.+. .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34445556777777777763 244556666677777777765542 2345666777777777777765 2
Q ss_pred cchhhhCCCC---CcEEecCCCCCC-----cCccccCCC-CCCCEEEeeCCCCC-----CcccccCCCCCCcEEEccCCC
Q 012082 289 LPATFGNLIN---LMNLDLGSNEFT-----HLPDTIGCL-TSLKTLNVETNELE-----DLPYTIGNCSSLTELRLDFNQ 354 (471)
Q Consensus 289 lp~~l~~l~~---L~~L~l~~~~l~-----~l~~~l~~l-~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~ 354 (471)
.+..+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|.+. .++..+..+++|++|++++|.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 3344444443 778888777665 223445555 77788888777766 233445666778888888877
Q ss_pred CC-----cchhhhCCCCCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCCcc-hhhhc-----CCCCCcEEE
Q 012082 355 LR-----ALPEAIGKLECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELESI-TENLC-----FAVSLKKLN 418 (471)
Q Consensus 355 l~-----~l~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~-----~~~~L~~L~ 418 (471)
++ .++..+..+++|+.|++++|.+++ ++..+..+++|+.|++++|.++.. ...+. ..+.|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 256 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEE
Confidence 75 234445566788888888887764 345566778888888888877631 11111 236788888
Q ss_pred ccCCcCC---CCccchhccCCCCccEEEeecCCCCc-----CchhhhcC-CCCcEEEccC
Q 012082 419 VGNNFAD---LRALPRSIGNLEMLEQLDISDDQIRI-----LPDSFRLL-SKLRVFRAMR 469 (471)
Q Consensus 419 L~~n~~~---l~~lp~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~L-~~L~~L~l~~ 469 (471)
+++|... ...+...+..+++|+++++++|.++. +...+... +.|+.|++.+
T Consensus 257 l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred ccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 8877331 12344455667788888888888872 23333444 5666666543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=3e-16 Score=154.51 Aligned_cols=238 Identities=24% Similarity=0.237 Sum_probs=179.6
Q ss_pred EEEeeCCCCC--CCchhhcCCCCccEEEeecCCCC-----CcchhhcCCCCCcEEEeeCCCCCC-------cchhhhCCC
Q 012082 232 ELNLSENRIM--ALPSSIAGIKTLKKLDIHSNQLI-----NLPDSFGDLINLIDLDLHANRLKT-------LPATFGNLI 297 (471)
Q Consensus 232 ~L~L~~~~~~--~l~~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~~-------lp~~l~~l~ 297 (471)
.|+|..+.++ .....+..+.+|++|+++++.++ .++..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666655 24455677778999999999985 456677888899999999987763 345678899
Q ss_pred CCcEEecCCCCCC-cCccccCCCC---CCCEEEeeCCCCCC-----cccccCCC-CCCcEEEccCCCCC-----cchhhh
Q 012082 298 NLMNLDLGSNEFT-HLPDTIGCLT---SLKTLNVETNELED-----LPYTIGNC-SSLTELRLDFNQLR-----ALPEAI 362 (471)
Q Consensus 298 ~L~~L~l~~~~l~-~l~~~l~~l~---~L~~L~l~~~~l~~-----l~~~l~~l-~~L~~L~l~~~~l~-----~l~~~l 362 (471)
+|++|++++|.+. ..+..+..+. +|++|++++|.+.. +...+..+ ++|+.|++++|.++ .++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999886 3444444444 49999999998762 23456667 89999999999987 345567
Q ss_pred CCCCCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCC-----cchhhhcCCCCCcEEEccCCcCCCCccchh
Q 012082 363 GKLECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELE-----SITENLCFAVSLKKLNVGNNFADLRALPRS 432 (471)
Q Consensus 363 ~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~ 432 (471)
..+++|++|++++|.+++ ++..+..+++|+.|++++|.+. .+...+..+++|++|++++|......+...
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 788899999999999884 4456677789999999999986 344556678899999999984321122111
Q ss_pred cc----CCCCccEEEeecCCCC-----cCchhhhcCCCCcEEEccC
Q 012082 433 IG----NLEMLEQLDISDDQIR-----ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 433 l~----~l~~L~~L~L~~n~l~-----~lp~~l~~L~~L~~L~l~~ 469 (471)
.. ..+.|++|++++|.++ .+...+..+++|+.+++.+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 11 2479999999999986 4556777889999998864
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.55 E-value=1.9e-16 Score=157.16 Aligned_cols=195 Identities=32% Similarity=0.462 Sum_probs=171.7
Q ss_pred CCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecC
Q 012082 226 KLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLG 305 (471)
Q Consensus 226 ~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 305 (471)
.+..-...|++.|.+..+|..++.+..|..+.|..|.+..+|..++++..|.+|||+.|++..+|..++.|+ |+.|.++
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 344556789999999999999888889999999999999999999999999999999999999999998887 8999999
Q ss_pred CCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhc
Q 012082 306 SNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTI 385 (471)
Q Consensus 306 ~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l 385 (471)
+|+++.+|+.++.+..|..|+.+.|.+..+|..++.+.+|+.|.+..|.+..+|..+..+ .|..|++++|++..+|..+
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 999999999999889999999999999999999999999999999999999999988854 4899999999999999999
Q ss_pred cCCCCCcEEEeeCCCCCcchhhhcCCC---CCcEEEccCC
Q 012082 386 GNLTKLKELDVSFNELESITENLCFAV---SLKKLNVGNN 422 (471)
Q Consensus 386 ~~l~~L~~L~L~~n~l~~l~~~l~~~~---~L~~L~L~~n 422 (471)
.+++.|++|-|.+|.+.+-|..++-.- -.++|+..-|
T Consensus 231 r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 999999999999999987776665322 2455555443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=4.1e-16 Score=148.65 Aligned_cols=237 Identities=27% Similarity=0.435 Sum_probs=119.4
Q ss_pred ccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeC-CCCCCcch-hhhCCCCCcEEecC
Q 012082 230 VTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHA-NRLKTLPA-TFGNLINLMNLDLG 305 (471)
Q Consensus 230 L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~-~~l~~lp~-~l~~l~~L~~L~l~ 305 (471)
...+.|..|.|+.+|+ +|+.+++||.|+|+.|.|+.| |+.|.++.+|.+|-+.+ |+|+.+|. .|.+|..|+-|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3455555555555542 355555555666655555554 45555555555544444 55555554 35555555555555
Q ss_pred CCCCCcC-ccccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCC------Ccc-------hhhhCC------
Q 012082 306 SNEFTHL-PDTIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQL------RAL-------PEAIGK------ 364 (471)
Q Consensus 306 ~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l------~~l-------~~~l~~------ 364 (471)
-|.+..+ .+.+..+++|..|.+..|.+..++. .+..+.+++.+.+..|.+ .-+ |...+.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 5555432 3444555555555555555544443 334444444444333221 000 000000
Q ss_pred ----------------CCCCcEE--Eeec-CCCCC-Cc-hhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCcEEEccCC
Q 012082 365 ----------------LECLEIL--TLHY-NRIKG-LP-TTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 365 ----------------l~~L~~L--~l~~-~~l~~-l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n 422 (471)
..+++.+ .+.. +.... .| ..+..+++|+.|+|++|.++.+. .++.....++.|.|..|
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc
Confidence 0001111 1111 11111 22 34566777777777777776553 35566667777777766
Q ss_pred cCCCCccch-hccCCCCccEEEeecCCCC-cCchhhhcCCCCcEEEcc
Q 012082 423 FADLRALPR-SIGNLEMLEQLDISDDQIR-ILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 423 ~~~l~~lp~-~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~l~ 468 (471)
.+..+.. .+..+.+|+.|+|.+|+|+ ..|..|..+..|..|++.
T Consensus 309 --~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 309 --KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred --hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 3344422 3456667777777777776 344566666666666653
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.44 E-value=8.2e-14 Score=141.52 Aligned_cols=180 Identities=39% Similarity=0.615 Sum_probs=142.7
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCC-CccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEE
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIK-TLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 302 (471)
+..++.++.|++.++.+..++.....+. +|++|++++|.+..+|..++.+++|+.|+++.|++..+|...+.+++|+.|
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3444678888888888888877777774 888888888888888777788888888888888888888777788888888
Q ss_pred ecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCc
Q 012082 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP 382 (471)
Q Consensus 303 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 382 (471)
++++|++..+|..+..+..|++|.+++|.+...+..+.++.++..+.+.++.+..++..++.++++++|++++|.++.++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 88888888888777777778888888887666677777888888888888877777777788888888888888888876
Q ss_pred hhccCCCCCcEEEeeCCCCCcc
Q 012082 383 TTIGNLTKLKELDVSFNELESI 404 (471)
Q Consensus 383 ~~l~~l~~L~~L~L~~n~l~~l 404 (471)
. ++.+.+++.|+++++.+...
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred c-ccccCccCEEeccCcccccc
Confidence 6 77788888888888776543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=5.3e-15 Score=147.00 Aligned_cols=211 Identities=30% Similarity=0.450 Sum_probs=153.4
Q ss_pred EEeeCCCCCCCchhh--cCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCC
Q 012082 233 LNLSENRIMALPSSI--AGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFT 310 (471)
Q Consensus 233 L~L~~~~~~~l~~~i--~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~ 310 (471)
|.|++-.+..+|..- ..+.--...+++.|.+..+|..++.+..|+.+.|+.|.+..+|..+.++..|.+|+++.|++.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 445555555444221 333344556778888888887777777888888888888888888888888888888888888
Q ss_pred cCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCC
Q 012082 311 HLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTK 390 (471)
Q Consensus 311 ~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~ 390 (471)
.+|..+..|+ |+.|-+++|+++.+|..++....|..|+.+.|.+..+|..++.+.+|+.|++..|++..+|..+..++
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp- 212 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP- 212 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-
Confidence 8887776665 77788888888888877887778888888888888888878888888888888888888887777554
Q ss_pred CcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccC---CCCccEEEeecC
Q 012082 391 LKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGN---LEMLEQLDISDD 447 (471)
Q Consensus 391 L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~---l~~L~~L~L~~n 447 (471)
|..||+++|++..+|-.+..+..|++|-|.+| .+.+-|..++. ..=.++|++.-+
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenN--PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENN--PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccC--CCCCChHHHHhccceeeeeeecchhc
Confidence 77888888888888888888888888888777 45565555432 333455555544
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.9e-14 Score=137.34 Aligned_cols=243 Identities=26% Similarity=0.371 Sum_probs=150.5
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeec-CCCCCcch-hhcCCCCCcE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHS-NQLINLPD-SFGDLINLID 278 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~-~~i~~lp~-~i~~l~~L~~ 278 (471)
...+.+.+..+.+..+. +.+++.+++||.|||++|.|+.+ |++|.++..|..|-+.+ |.|+.+|. .|++|..|+.
T Consensus 67 ~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 34556666665443332 35678899999999999999986 78899999988887776 89999985 5899999999
Q ss_pred EEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCCCCC---Ccc----------cccC--C
Q 012082 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELE---DLP----------YTIG--N 341 (471)
Q Consensus 279 L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~---~l~----------~~l~--~ 341 (471)
|.+.-|++..++ +.++.+++|..|.+..|.+..++. .+..+..++++.+..|.+. .+| -..+ .
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 999999988664 578999999999999998887766 6677777777766554311 000 0000 0
Q ss_pred CC--------------------CCcEE---EccCCCC-Ccch-hhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEE
Q 012082 342 CS--------------------SLTEL---RLDFNQL-RALP-EAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELD 395 (471)
Q Consensus 342 l~--------------------~L~~L---~l~~~~l-~~l~-~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~ 395 (471)
|. .++.+ ..+.+.. ...| ..+..+++|++|++++|.++.+ +.++.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 00 00000 0001111 1111 1345666666666666666664 34556666666666
Q ss_pred eeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecC
Q 012082 396 VSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDD 447 (471)
Q Consensus 396 L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n 447 (471)
|..|.+..+.. .+.++..|+.|+|.+|.+. .--|..+..+.+|.+|.+-.|
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccC
Confidence 66666654432 2344555666666666322 112334555555666665443
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=2.5e-13 Score=138.03 Aligned_cols=197 Identities=34% Similarity=0.513 Sum_probs=169.0
Q ss_pred EEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCC-CCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCC
Q 012082 255 KLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLI-NLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELE 333 (471)
Q Consensus 255 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~-~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 333 (471)
.+.+..+.+..-+..+..+..+..|++.++.++.+|.....+. +|+.|++++|.+..+|..++.+++|+.|+++.|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5788888775444556677889999999999999988888885 999999999999999888999999999999999999
Q ss_pred CcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCC
Q 012082 334 DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVS 413 (471)
Q Consensus 334 ~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~ 413 (471)
.++...+..++|..|++++|.+..+|..+.....|+.|.+++|.+...+..+..+.++..+.+.+|.+..++..++.+++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~ 256 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence 99887778899999999999999999877777789999999998777778888889999999998988887788888889
Q ss_pred CcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCch
Q 012082 414 LKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPD 454 (471)
Q Consensus 414 L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~ 454 (471)
+++|++++| .+..++. ++.+.+|+.|+++++.+..++.
T Consensus 257 l~~L~~s~n--~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 257 LETLDLSNN--QISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cceeccccc--ccccccc-ccccCccCEEeccCccccccch
Confidence 999999988 5667765 8888999999999988875554
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=9.1e-13 Score=121.88 Aligned_cols=217 Identities=21% Similarity=0.187 Sum_probs=112.7
Q ss_pred hcCCCCccEEEeecCC--CC-------CcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccC
Q 012082 247 IAGIKTLKKLDIHSNQ--LI-------NLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIG 317 (471)
Q Consensus 247 i~~l~~L~~L~L~~~~--i~-------~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~ 317 (471)
+..+..|.+|..++.. +. .+|-.+.-+.+|.++.++.|.-..+-.-...=+.|+++.+.+..+...|. +-
T Consensus 178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~ 256 (490)
T KOG1259|consen 178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LL 256 (490)
T ss_pred HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc-cc
Confidence 3445667777776541 21 23333445566777777766544333222233456666555543321111 00
Q ss_pred CCCCCCEEEeeCCCC--CCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEE
Q 012082 318 CLTSLKTLNVETNEL--EDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELD 395 (471)
Q Consensus 318 ~l~~L~~L~l~~~~l--~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~ 395 (471)
....+.-+.-..-.. ..+...+..++.|.++++++|.++.+.+.+.-.+.++.|+++.|++..+.. ++.+++|+.|+
T Consensus 257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LD 335 (490)
T KOG1259|consen 257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLD 335 (490)
T ss_pred chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEee
Confidence 000010000000000 011122333455666666666666666666666666666666666666533 66666666666
Q ss_pred eeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCc--hhhhcCCCCcEEEcc
Q 012082 396 VSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILP--DSFRLLSKLRVFRAM 468 (471)
Q Consensus 396 L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~l~~L~~L~~L~l~ 468 (471)
|++|.++++..+-..+-++++|+|++| .+..+ ..++.+-+|..||+++|+|..+. ..+++||.|+.+.+.
T Consensus 336 LS~N~Ls~~~Gwh~KLGNIKtL~La~N--~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 336 LSGNLLAECVGWHLKLGNIKTLKLAQN--KIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred cccchhHhhhhhHhhhcCEeeeehhhh--hHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 666666665555555666666666666 33444 34556666666666666666433 446666666655543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=6.7e-13 Score=122.74 Aligned_cols=182 Identities=23% Similarity=0.296 Sum_probs=91.9
Q ss_pred ccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc----ch--------------------hhcCCC
Q 012082 219 WLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL----PD--------------------SFGDLI 274 (471)
Q Consensus 219 ~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l----p~--------------------~i~~l~ 274 (471)
.+|..+.-+++|..+.++.|.-..+-+....-+.|.++..+...+... |. .+...+
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 345555667778888888776554433333345677777766544422 11 111223
Q ss_pred CCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCC
Q 012082 275 NLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQ 354 (471)
Q Consensus 275 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 354 (471)
.|+++||++|.|+.+..++.-.+.++.|++++|.+..+.. +..+.+|+.|++++|.+..+..+=.++.++++|.+++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 4555555555555555555555555555555555544422 444555555555555444443333344445555555555
Q ss_pred CCcchhhhCCCCCCcEEEeecCCCCCCc--hhccCCCCCcEEEeeCCCCC
Q 012082 355 LRALPEAIGKLECLEILTLHYNRIKGLP--TTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 355 l~~l~~~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~ 402 (471)
++.+. .++++-+|..|++.+|++.++. ..++++|.|+.+.|.+|.+.
T Consensus 364 iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 364 IETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred Hhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 44442 2444445555555555554421 34455555555555555444
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3.4e-12 Score=139.37 Aligned_cols=221 Identities=23% Similarity=0.261 Sum_probs=134.1
Q ss_pred cCCCcEEEEecCCCCCccccc-chhcCCCCCccEEEeeCC-CCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCc
Q 012082 200 AKTGAVVLDLRGKLTDQIEWL-PVSIGKLKDVTELNLSEN-RIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLI 277 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~-~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 277 (471)
....+++|-+.++.. ....+ +..+..++.|++||+++| .+..+|..++.+-+||||+++++.+.++|..+++|..|.
T Consensus 543 ~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 344677887777532 11122 234677999999999987 467899999999999999999999999999999999999
Q ss_pred EEEeeCCC-CCCcchhhhCCCCCcEEecCCCCCCc---CccccCCCCCCCEEEeeCCCCCCcccccCCCCCCc----EEE
Q 012082 278 DLDLHANR-LKTLPATFGNLINLMNLDLGSNEFTH---LPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLT----ELR 349 (471)
Q Consensus 278 ~L~L~~~~-l~~lp~~l~~l~~L~~L~l~~~~l~~---l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~----~L~ 349 (471)
+|++..+. +..+|.....+++||+|.+....... .-..+.++.+|+.+.+..... .+...+..++.|. .+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhh
Confidence 99999885 44556667779999999997764221 122334445555554433322 1111122222222 222
Q ss_pred ccCCCCCcchhhhCCCCCCcEEEeecCCCCCCc-hh-----cc-CCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCC
Q 012082 350 LDFNQLRALPEAIGKLECLEILTLHYNRIKGLP-TT-----IG-NLTKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 350 l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~-----l~-~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n 422 (471)
+.++.....+..+..+.+|+.|.+.++.+.+.. .+ .. .++++..+.+.+|.....+.+.-.+++|+.|.+..+
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSC 780 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecc
Confidence 233344444455666667777777766665411 01 00 122334444444443333444445556666655544
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=9.1e-13 Score=127.64 Aligned_cols=202 Identities=25% Similarity=0.270 Sum_probs=133.0
Q ss_pred chhcCCCCCccEEEeeCCCCCCCc--hhhcCCCCccEEEeecCCCCC---cchhhcCCCCCcEEEeeCCCCCCcchh--h
Q 012082 221 PVSIGKLKDVTELNLSENRIMALP--SSIAGIKTLKKLDIHSNQLIN---LPDSFGDLINLIDLDLHANRLKTLPAT--F 293 (471)
Q Consensus 221 ~~~~~~l~~L~~L~L~~~~~~~l~--~~i~~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~l~~lp~~--l 293 (471)
...-+++++|+...|.++.+...+ .....|++++.|+|++|-+.. +......+++|+.|+++.|++....++ -
T Consensus 114 ~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 114 AAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 334456778888888888777655 356778888888888886553 334456788888888888877643222 2
Q ss_pred hCCCCCcEEecCCCCCC--cCccccCCCCCCCEEEeeCCC-CCCcccccCCCCCCcEEEccCCCCCcch--hhhCCCCCC
Q 012082 294 GNLINLMNLDLGSNEFT--HLPDTIGCLTSLKTLNVETNE-LEDLPYTIGNCSSLTELRLDFNQLRALP--EAIGKLECL 368 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L 368 (471)
..+++|+.|.+++|+++ .+...+..+++|+.|++.+|. +......-..++.|++|+|++|++-.++ ..++.++.|
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence 35667888888888776 333444567778888887773 2222222334567778888888776665 346677778
Q ss_pred cEEEeecCCCCC--Cchh-----ccCCCCCcEEEeeCCCCCcch--hhhcCCCCCcEEEccCC
Q 012082 369 EILTLHYNRIKG--LPTT-----IGNLTKLKELDVSFNELESIT--ENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 369 ~~L~l~~~~l~~--l~~~-----l~~l~~L~~L~L~~n~l~~l~--~~l~~~~~L~~L~L~~n 422 (471)
..|+++.|++.+ .|+. ...+++|+.|++..|++..++ ..+..+++|+.|.+..|
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 888887777776 2332 455677777777777775443 34455666666666555
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-12 Score=126.10 Aligned_cols=221 Identities=24% Similarity=0.292 Sum_probs=155.6
Q ss_pred ecCCccccchhhHHHHHhhhccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC---chhhcCCCCccE
Q 012082 179 IGEENTEKLSLMKMAAVIENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL---PSSIAGIKTLKK 255 (471)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l---~~~i~~l~~L~~ 255 (471)
++...++-+++.+++.- .+....++.+.+.++.+..... ......|++++.|||+.|-+... ......+++|+.
T Consensus 100 i~nK~vE~iGfDki~ak--Qsn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~ 176 (505)
T KOG3207|consen 100 ISNKQVEFIGFDKIAAK--QSNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLEN 176 (505)
T ss_pred hcCceeEEecHHHHHHH--hhhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchh
Confidence 34444555565555543 3355566777777765443211 14667789999999999877753 345678899999
Q ss_pred EEeecCCCCCcchh--hcCCCCCcEEEeeCCCCC--CcchhhhCCCCCcEEecCCCC-CCcCccccCCCCCCCEEEeeCC
Q 012082 256 LDIHSNQLINLPDS--FGDLINLIDLDLHANRLK--TLPATFGNLINLMNLDLGSNE-FTHLPDTIGCLTSLKTLNVETN 330 (471)
Q Consensus 256 L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~ 330 (471)
|+++.|.+....++ -..+++|+.|.|+.|.++ .+-..+..+|+|..|++.+|. +..-......++.|+.|++++|
T Consensus 177 LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 177 LNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNN 256 (505)
T ss_pred cccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCC
Confidence 99999877643222 236788999999999887 344456678899999999884 3333334456778999999999
Q ss_pred CCCCcc--cccCCCCCCcEEEccCCCCCcc--hhh-----hCCCCCCcEEEeecCCCCCCc--hhccCCCCCcEEEeeCC
Q 012082 331 ELEDLP--YTIGNCSSLTELRLDFNQLRAL--PEA-----IGKLECLEILTLHYNRIKGLP--TTIGNLTKLKELDVSFN 399 (471)
Q Consensus 331 ~l~~l~--~~l~~l~~L~~L~l~~~~l~~l--~~~-----l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~L~~n 399 (471)
++..++ ...+.++.|..|+++.|++.++ |+. ....++|++|++..|++.+++ ..+..+++|+.|.+..|
T Consensus 257 ~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 257 NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 887766 5678889999999999888644 332 356788999999999987754 45666778888887777
Q ss_pred CCC
Q 012082 400 ELE 402 (471)
Q Consensus 400 ~l~ 402 (471)
.+.
T Consensus 337 ~ln 339 (505)
T KOG3207|consen 337 YLN 339 (505)
T ss_pred ccc
Confidence 765
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=3.8e-12 Score=120.26 Aligned_cols=229 Identities=24% Similarity=0.297 Sum_probs=171.9
Q ss_pred hhcCCCCCccEEEeeCCCCCC-----CchhhcCCCCccEEEeecCCCC----Ccc-------hhhcCCCCCcEEEeeCCC
Q 012082 222 VSIGKLKDVTELNLSENRIMA-----LPSSIAGIKTLKKLDIHSNQLI----NLP-------DSFGDLINLIDLDLHANR 285 (471)
Q Consensus 222 ~~~~~l~~L~~L~L~~~~~~~-----l~~~i~~l~~L~~L~L~~~~i~----~lp-------~~i~~l~~L~~L~L~~~~ 285 (471)
.....+..++.++|++|.++. +...+.+.+.|+..++++-... .+| +.+-.+++|++||||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 445677899999999999883 4566788889999999875322 334 345678899999999997
Q ss_pred CC-----CcchhhhCCCCCcEEecCCCCCCcC--------------ccccCCCCCCCEEEeeCCCCCCcc-----cccCC
Q 012082 286 LK-----TLPATFGNLINLMNLDLGSNEFTHL--------------PDTIGCLTSLKTLNVETNELEDLP-----YTIGN 341 (471)
Q Consensus 286 l~-----~lp~~l~~l~~L~~L~l~~~~l~~l--------------~~~l~~l~~L~~L~l~~~~l~~l~-----~~l~~ 341 (471)
+. .+-.-+..+..|++|.+.+|.+... ....+.-+.|+.+....|.+..-+ ..+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 66 2234577899999999999987622 233456678999999999877443 45667
Q ss_pred CCCCcEEEccCCCCC-----cchhhhCCCCCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCCc-----chh
Q 012082 342 CSSLTELRLDFNQLR-----ALPEAIGKLECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELES-----ITE 406 (471)
Q Consensus 342 l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~-----l~~ 406 (471)
.+.|+.+.+..|.+. .+...+..+++|+.|++.+|.++. +...+..+++|+.|++++|.+.. +..
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 789999999988873 345567899999999999998876 55677888899999999998872 233
Q ss_pred hh-cCCCCCcEEEccCCcCCCC---ccchhccCCCCccEEEeecCCCC
Q 012082 407 NL-CFAVSLKKLNVGNNFADLR---ALPRSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 407 ~l-~~~~~L~~L~L~~n~~~l~---~lp~~l~~l~~L~~L~L~~n~l~ 450 (471)
.+ ...|+|+.|.+.+|.+..+ .+-..+...|.|..|+|++|.+.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 22 3578999999999844322 22334566889999999999883
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.6e-12 Score=121.40 Aligned_cols=226 Identities=21% Similarity=0.287 Sum_probs=171.3
Q ss_pred ccCCCcEEEEecCCCCCc--ccccchhcCCCCCccEEEeeCCCCC----CCc-------hhhcCCCCccEEEeecCCCC-
Q 012082 199 SAKTGAVVLDLRGKLTDQ--IEWLPVSIGKLKDVTELNLSENRIM----ALP-------SSIAGIKTLKKLDIHSNQLI- 264 (471)
Q Consensus 199 ~~~~~l~~L~l~~~~~~~--~~~l~~~~~~l~~L~~L~L~~~~~~----~l~-------~~i~~l~~L~~L~L~~~~i~- 264 (471)
.....+..++++|+.+.. ..|+...+.+.+.|+..++++...+ .+| ..+.++++|++|+|++|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 356678889999987753 3577788888889999999876543 233 34567789999999999766
Q ss_pred ----CcchhhcCCCCCcEEEeeCCCCCCcc--------------hhhhCCCCCcEEecCCCCCCc-----CccccCCCCC
Q 012082 265 ----NLPDSFGDLINLIDLDLHANRLKTLP--------------ATFGNLINLMNLDLGSNEFTH-----LPDTIGCLTS 321 (471)
Q Consensus 265 ----~lp~~i~~l~~L~~L~L~~~~l~~lp--------------~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~ 321 (471)
.+...+..+..|+.|.|.+|.+.... ..+..-++|+++..+.|.+.. +...+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 23355777999999999999887321 224456789999999997763 3456677789
Q ss_pred CCEEEeeCCCCCC-----cccccCCCCCCcEEEccCCCCC-----cchhhhCCCCCCcEEEeecCCCCC-----Cchhc-
Q 012082 322 LKTLNVETNELED-----LPYTIGNCSSLTELRLDFNQLR-----ALPEAIGKLECLEILTLHYNRIKG-----LPTTI- 385 (471)
Q Consensus 322 L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~l~~-----l~~~l- 385 (471)
|+.+.+..|.+.. +...+..|++|+.|++.+|.++ .+...+..+++|+.|++++|.+.. +...+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 9999999987652 3456789999999999999885 456678889999999999998877 33333
Q ss_pred cCCCCCcEEEeeCCCCC-----cchhhhcCCCCCcEEEccCCcC
Q 012082 386 GNLTKLKELDVSFNELE-----SITENLCFAVSLKKLNVGNNFA 424 (471)
Q Consensus 386 ~~l~~L~~L~L~~n~l~-----~l~~~l~~~~~L~~L~L~~n~~ 424 (471)
...|+|+.|.+.+|.++ .+...+...|.|.+|+|++|..
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 34789999999999987 2333445678999999999943
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=4.8e-11 Score=105.68 Aligned_cols=101 Identities=30% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCCEEEeeCCCCCCcccccC-CCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhc-cCCCCCcEEEee
Q 012082 320 TSLKTLNVETNELEDLPYTIG-NCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTI-GNLTKLKELDVS 397 (471)
Q Consensus 320 ~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~L~ 397 (471)
..+++|++.+|.+..+. .++ .+.+|+.|++++|.++.+. .+..+++|+.|++++|.++.+...+ ..+++|+.|+++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 34555666665555443 233 3455555555555555553 2445555555555555555543333 235555555555
Q ss_pred CCCCCcch--hhhcCCCCCcEEEccCC
Q 012082 398 FNELESIT--ENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 398 ~n~l~~l~--~~l~~~~~L~~L~L~~n 422 (471)
+|.+..+. ..+..+++|+.|+|.+|
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCC
Confidence 55554321 23344555555555555
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.9e-11 Score=107.07 Aligned_cols=103 Identities=31% Similarity=0.499 Sum_probs=28.6
Q ss_pred CccEEEeeCCCCCCCchhhc-CCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhh-hCCCCCcEEecCC
Q 012082 229 DVTELNLSENRIMALPSSIA-GIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATF-GNLINLMNLDLGS 306 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~i~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~ 306 (471)
.++.|+|.+|.+..+. .++ .+.+|+.|++++|.|+.+. .+..+++|++|++++|+|+.++..+ ..+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 5566666666666552 233 4556666666666666653 3555666666666666666664444 2466666666666
Q ss_pred CCCCcCc--cccCCCCCCCEEEeeCCCCC
Q 012082 307 NEFTHLP--DTIGCLTSLKTLNVETNELE 333 (471)
Q Consensus 307 ~~l~~l~--~~l~~l~~L~~L~l~~~~l~ 333 (471)
|+|..+. ..+..+++|+.|++.+|.+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6655432 23344555555555555443
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=3.5e-11 Score=122.87 Aligned_cols=222 Identities=26% Similarity=0.358 Sum_probs=105.0
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEe
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLD 303 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 303 (471)
+..+++|..|++.+|.+..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|.|..+ ..+..++.|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDI-SGLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhc-cCCccchhhhccc
Confidence 3445555555555555555433345555555555555555544 2234445555555555555544 2233355555555
Q ss_pred cCCCCCCcCccc-cCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCC--CcEEEeecCCCCC
Q 012082 304 LGSNEFTHLPDT-IGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLEC--LEILTLHYNRIKG 380 (471)
Q Consensus 304 l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~--L~~L~l~~~~l~~ 380 (471)
+++|.+..+... ...+.+|+.+.+.+|.+..+. .+..+..+..+++..|.+..+.. +..+.. |+.+.+.+|++..
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccc
Confidence 555555544332 344555555555555444322 12222233333444444433211 222222 5666666666666
Q ss_pred CchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCC-CCccchh--ccCCCCccEEEeecCCCC
Q 012082 381 LPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFAD-LRALPRS--IGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 381 l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~-l~~lp~~--l~~l~~L~~L~L~~n~l~ 450 (471)
.+..+..+.++..|++.+|.+..+.. +...+.+..+....+... ....... .+..++++.+.+..|.+.
T Consensus 247 ~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 247 SPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 55555566666666666666553322 222333444444443211 0111111 344556666666665554
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=8e-11 Score=120.22 Aligned_cols=218 Identities=28% Similarity=0.415 Sum_probs=158.5
Q ss_pred CCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecC
Q 012082 226 KLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLG 305 (471)
Q Consensus 226 ~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~ 305 (471)
.+..+..+++..|.+..+-..+..+.+|..|++.+|.|..+...+..+++|++|++++|.|+.+ .++..++.|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheec
Confidence 4566777778888777755667888899999999999988866578899999999999999877 456777889999999
Q ss_pred CCCCCcCccccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchh
Q 012082 306 SNEFTHLPDTIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTT 384 (471)
Q Consensus 306 ~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 384 (471)
+|.++.+. .+..+++|+.+++++|.+..+... +..+.+++.+.+.+|.+..+.. +..+..+..+++..|.++.+- .
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~-~ 225 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE-G 225 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc-C
Confidence 99888774 455688899999999988877653 5778888888898888765532 334445555577777766541 2
Q ss_pred ccCCC--CCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC
Q 012082 385 IGNLT--KLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 385 l~~l~--~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 450 (471)
+..+. +|+.+++++|++...+..+..+..+..|.+..|. +..+ ..+...+.+..+....+.+.
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~--~~~~-~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR--ISNL-EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcc--cccc-ccccccchHHHhccCcchhc
Confidence 22223 3888999999888776667778888888887772 2333 23444555666666666554
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.9e-10 Score=104.56 Aligned_cols=172 Identities=23% Similarity=0.240 Sum_probs=87.8
Q ss_pred CcEEEeeCCCCC--CcchhhhCCCCCcEEecCCCCCC-cCccccCCCCCCCEEEeeCCC-CCCc--ccccCCCCCCcEEE
Q 012082 276 LIDLDLHANRLK--TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNE-LEDL--PYTIGNCSSLTELR 349 (471)
Q Consensus 276 L~~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~-l~~l--~~~l~~l~~L~~L~ 349 (471)
|++|||+...|+ .+-..++.|.+|+.|.+.++.+. .+...+.+..+|+.|+++++. ++.. ---+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 555666655554 23334555556666666665544 333444555566666665542 3322 12245566666666
Q ss_pred ccCCCCC--cchhhhCC-CCCCcEEEeecCC----CCCCchhccCCCCCcEEEeeCCCCC--cchhhhcCCCCCcEEEcc
Q 012082 350 LDFNQLR--ALPEAIGK-LECLEILTLHYNR----IKGLPTTIGNLTKLKELDVSFNELE--SITENLCFAVSLKKLNVG 420 (471)
Q Consensus 350 l~~~~l~--~l~~~l~~-l~~L~~L~l~~~~----l~~l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~~~~L~~L~L~ 420 (471)
+++|.+. .+.-.+.+ -++|..|+++|+. .+.+..-...+|+|.+|||+.|..- .....+..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 6666552 11111222 2356666666652 1123334455677777777665432 333445566677777776
Q ss_pred CCcCCCCccchhccCCCCccEEEeecC
Q 012082 421 NNFADLRALPRSIGNLEMLEQLDISDD 447 (471)
Q Consensus 421 ~n~~~l~~lp~~l~~l~~L~~L~L~~n 447 (471)
.|+.-...---.+.+.|+|.+|++.++
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEeccc
Confidence 663221111123456667777776653
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.65 E-value=2.2e-10 Score=117.42 Aligned_cols=178 Identities=28% Similarity=0.337 Sum_probs=127.7
Q ss_pred chhcCCCCCccEEEeeCCCCCCCchhhcCC-CCccEEEeecCCCCCcchh----hcC------CCCCcEEEeeCCCCCCc
Q 012082 221 PVSIGKLKDVTELNLSENRIMALPSSIAGI-KTLKKLDIHSNQLINLPDS----FGD------LINLIDLDLHANRLKTL 289 (471)
Q Consensus 221 ~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l-~~L~~L~L~~~~i~~lp~~----i~~------l~~L~~L~L~~~~l~~l 289 (471)
|-.+..|+.||+|.+.+|++...- .+..+ ..|+.|..++ .+..+-.. .+. -..|.+.++++|.+..+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 556778889999999999887532 11111 2355554332 22211111 111 12477888889988888
Q ss_pred chhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchhhhCCCCCC
Q 012082 290 PATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPEAIGKLECL 368 (471)
Q Consensus 290 p~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 368 (471)
..++.-++.|++|+|++|+++... .+..++.|++||++.|.+..+|.. ...|. |+.|.+.+|.++.+- .+.++.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 888888999999999999988775 788889999999999998888743 23444 999999999888774 47788999
Q ss_pred cEEEeecCCCCCCc--hhccCCCCCcEEEeeCCCCCc
Q 012082 369 EILTLHYNRIKGLP--TTIGNLTKLKELDVSFNELES 403 (471)
Q Consensus 369 ~~L~l~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~~ 403 (471)
+.|++++|-+.+.. ..+..+..|+.|+|.+|.+..
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 99999999777632 344556778889999998763
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=1.6e-08 Score=94.10 Aligned_cols=197 Identities=21% Similarity=0.220 Sum_probs=124.8
Q ss_pred EEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCC---CchhhcCCCCccEEEeecCCCCCcchhh-cCCCCCcEEEe
Q 012082 206 VLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA---LPSSIAGIKTLKKLDIHSNQLINLPDSF-GDLINLIDLDL 281 (471)
Q Consensus 206 ~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~---l~~~i~~l~~L~~L~L~~~~i~~lp~~i-~~l~~L~~L~L 281 (471)
.+.+.++.++........-..++.++.+||.+|.++. +...+.++++|++|+++.|++..-...+ -.+.+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 4455666666655555556678889999999998885 3445688899999999988766332222 25668899999
Q ss_pred eCCCCC--CcchhhhCCCCCcEEecCCCCCCcCc---cccCC-CCCCCEEEeeCCCCC---CcccccCCCCCCcEEEccC
Q 012082 282 HANRLK--TLPATFGNLINLMNLDLGSNEFTHLP---DTIGC-LTSLKTLNVETNELE---DLPYTIGNCSSLTELRLDF 352 (471)
Q Consensus 282 ~~~~l~--~lp~~l~~l~~L~~L~l~~~~l~~l~---~~l~~-l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~ 352 (471)
.++.+. .....+..+|.++.|+++.|++..+. +.+.. -+.+++|....|... .....-..++++..+.+..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 888665 45566788888888888888554221 11111 124555555554322 1111122356677777777
Q ss_pred CCCCcchh--hhCCCCCCcEEEeecCCCCCCc--hhccCCCCCcEEEeeCCCCC
Q 012082 353 NQLRALPE--AIGKLECLEILTLHYNRIKGLP--TTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 353 ~~l~~l~~--~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~ 402 (471)
|.++.... ....++.+..|+++.+++.++. ..+..++.|..|.+.++.+.
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 76654322 3445666667777777777643 56677777777777777664
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=2.5e-07 Score=99.06 Aligned_cols=101 Identities=26% Similarity=0.529 Sum_probs=50.3
Q ss_pred ccEEEeeCCCCC-CCchhhcCCCCccEEEeecCCCC-CcchhhcCCCCCcEEEeeCCCCC-CcchhhhCCCCCcEEecCC
Q 012082 230 VTELNLSENRIM-ALPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLIDLDLHANRLK-TLPATFGNLINLMNLDLGS 306 (471)
Q Consensus 230 L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~ 306 (471)
++.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|++|+|++|++. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555544 24445555555555555555554 44555555555555555555554 4455555555555555555
Q ss_pred CCCC-cCccccCCC-CCCCEEEeeCC
Q 012082 307 NEFT-HLPDTIGCL-TSLKTLNVETN 330 (471)
Q Consensus 307 ~~l~-~l~~~l~~l-~~L~~L~l~~~ 330 (471)
|.+. .+|..++.+ .++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5544 444444332 23344444443
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.2e-08 Score=92.04 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCCCccEEEeecCCCCC---cchhhcCCCCCcEEEeeCCCCCCcchhh-hCCCCCcEEecCCCCCC--cCccccCCCCCC
Q 012082 249 GIKTLKKLDIHSNQLIN---LPDSFGDLINLIDLDLHANRLKTLPATF-GNLINLMNLDLGSNEFT--HLPDTIGCLTSL 322 (471)
Q Consensus 249 ~l~~L~~L~L~~~~i~~---lp~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L 322 (471)
.+.+++.|+|.+|.|+. +...+.++|+|++|+++.|++..--..+ ..+.+|+.|.+.+..+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34455555665555552 2233445555555555555544211111 23335555555554322 222333334444
Q ss_pred CEEEeeCC
Q 012082 323 KTLNVETN 330 (471)
Q Consensus 323 ~~L~l~~~ 330 (471)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 44444443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.51 E-value=7.1e-10 Score=113.72 Aligned_cols=126 Identities=22% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCC
Q 012082 322 LKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNEL 401 (471)
Q Consensus 322 L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l 401 (471)
|.+.+.++|.+..+..++.-++.|+.|++++|++..+. .+..+++|++|++++|.+..+|..-..-.+|+.|.+.+|.+
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 44444444444444444444455555555555554443 34555555555555555554442211111255555555555
Q ss_pred CcchhhhcCCCCCcEEEccCCcCC-CCccchhccCCCCccEEEeecCCCC
Q 012082 402 ESITENLCFAVSLKKLNVGNNFAD-LRALPRSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 402 ~~l~~~l~~~~~L~~L~L~~n~~~-l~~lp~~l~~l~~L~~L~L~~n~l~ 450 (471)
+.+.+ +.++.+|+.|++++|... ...+ ..+..+..|..|.|.+|.+.
T Consensus 245 ~tL~g-ie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTLRG-IENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhhhh-HHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCccc
Confidence 44332 344455555555554211 1111 12334444555555555444
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3.7e-09 Score=98.25 Aligned_cols=172 Identities=22% Similarity=0.169 Sum_probs=104.5
Q ss_pred CccEEEeecCCCC--CcchhhcCCCCCcEEEeeCCCCC-CcchhhhCCCCCcEEecCCC-CCCcC--ccccCCCCCCCEE
Q 012082 252 TLKKLDIHSNQLI--NLPDSFGDLINLIDLDLHANRLK-TLPATFGNLINLMNLDLGSN-EFTHL--PDTIGCLTSLKTL 325 (471)
Q Consensus 252 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~-~l~~l--~~~l~~l~~L~~L 325 (471)
.|++|||+...|+ .+-..+..|..|+.|.+.++++. .+...+.+-.+|+.|+++.| .++.. .--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777766665 33344556667777777777665 34455666677777777766 34422 2334567777777
Q ss_pred EeeCCCCCC--cccccC-CCCCCcEEEccCCCC----CcchhhhCCCCCCcEEEeecCC-CCC-CchhccCCCCCcEEEe
Q 012082 326 NVETNELED--LPYTIG-NCSSLTELRLDFNQL----RALPEAIGKLECLEILTLHYNR-IKG-LPTTIGNLTKLKELDV 396 (471)
Q Consensus 326 ~l~~~~l~~--l~~~l~-~l~~L~~L~l~~~~l----~~l~~~l~~l~~L~~L~l~~~~-l~~-l~~~l~~l~~L~~L~L 396 (471)
++++|.+.. +...+. --++|..|+++|+.- ..+......+++|..|++++|. ++. ....+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777775441 111111 124677777777632 2233334578888888888774 343 4466777888888888
Q ss_pred eCCCCC--cchhhhcCCCCCcEEEccCCc
Q 012082 397 SFNELE--SITENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 397 ~~n~l~--~l~~~l~~~~~L~~L~L~~n~ 423 (471)
+.|..- ...-.+...|+|.+|++.|+.
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 887643 111234567788888888773
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=4.6e-09 Score=101.77 Aligned_cols=150 Identities=20% Similarity=0.133 Sum_probs=94.8
Q ss_pred CCCCCCEEEeeCCC-CCCc--ccccCCCCCCcEEEccCCCC-Ccc--hhhhCCCCCCcEEEeecCCCCC---CchhccCC
Q 012082 318 CLTSLKTLNVETNE-LEDL--PYTIGNCSSLTELRLDFNQL-RAL--PEAIGKLECLEILTLHYNRIKG---LPTTIGNL 388 (471)
Q Consensus 318 ~l~~L~~L~l~~~~-l~~l--~~~l~~l~~L~~L~l~~~~l-~~l--~~~l~~l~~L~~L~l~~~~l~~---l~~~l~~l 388 (471)
.+..|+.|+.+++. ++.. -.-..++.+|+.|.++.|+. +.. -..-.+++.|+.+++.++.... +...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777776653 2221 12234678888888888763 222 1212367788888888875433 33344568
Q ss_pred CCCcEEEeeCCCCC------cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCC-C--cCchhhhcC
Q 012082 389 TKLKELDVSFNELE------SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQI-R--ILPDSFRLL 459 (471)
Q Consensus 389 ~~L~~L~L~~n~l~------~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l-~--~lp~~l~~L 459 (471)
+.|+.|.++.|... .+...-.....|..+.|+++....+..-..+..+++|+.+++.+++- + .+-..-.+|
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88999988877643 12233345667888899888655555556677888999999888643 3 233444578
Q ss_pred CCCcEEEc
Q 012082 460 SKLRVFRA 467 (471)
Q Consensus 460 ~~L~~L~l 467 (471)
|++++..+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 87776654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.48 E-value=6.1e-08 Score=89.14 Aligned_cols=184 Identities=19% Similarity=0.222 Sum_probs=89.2
Q ss_pred hcCCCCCcEEEeeCCCCC-Ccc----hhhhCCCCCcEEecCCCCCCcCc--------------cccCCCCCCCEEEeeCC
Q 012082 270 FGDLINLIDLDLHANRLK-TLP----ATFGNLINLMNLDLGSNEFTHLP--------------DTIGCLTSLKTLNVETN 330 (471)
Q Consensus 270 i~~l~~L~~L~L~~~~l~-~lp----~~l~~l~~L~~L~l~~~~l~~l~--------------~~l~~l~~L~~L~l~~~ 330 (471)
+-+|++|++.+||.|-+. ..| +.+++-+.|.||.+++|.+..+. .....-+.|++..+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 344555555555555433 111 23444555555555555443221 11123345666666555
Q ss_pred CCCCccc-----ccCCCCCCcEEEccCCCCCc--c----hhhhCCCCCCcEEEeecCCCCC-----CchhccCCCCCcEE
Q 012082 331 ELEDLPY-----TIGNCSSLTELRLDFNQLRA--L----PEAIGKLECLEILTLHYNRIKG-----LPTTIGNLTKLKEL 394 (471)
Q Consensus 331 ~l~~l~~-----~l~~l~~L~~L~l~~~~l~~--l----~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L 394 (471)
.+...+. .+..-.+|+.+.+..|.+.. + ...+..+++|+.|++..|.++- +...+..-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 5543321 12222356666666665531 1 1123455666666666665544 22333334556666
Q ss_pred EeeCCCCCc-----chhhh--cCCCCCcEEEccCCcCCCCcc-----chh-ccCCCCccEEEeecCCCCcCc
Q 012082 395 DVSFNELES-----ITENL--CFAVSLKKLNVGNNFADLRAL-----PRS-IGNLEMLEQLDISDDQIRILP 453 (471)
Q Consensus 395 ~L~~n~l~~-----l~~~l--~~~~~L~~L~L~~n~~~l~~l-----p~~-l~~l~~L~~L~L~~n~l~~lp 453 (471)
.+..|-++. +...+ -..|+|..|.+.+|-.....+ +.. -+.+|-|..|.+.+|.+....
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 666665541 11111 145667777766663222222 111 235677777777777776433
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.1e-07 Score=69.11 Aligned_cols=57 Identities=47% Similarity=0.758 Sum_probs=27.7
Q ss_pred CccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCC
Q 012082 252 TLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNE 308 (471)
Q Consensus 252 ~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~ 308 (471)
+|++|++++|.+..+| ..|..+++|++|++++|.++.++ ..|.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3445555555555443 23444555555555555555443 234555555555555543
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=4.2e-07 Score=97.38 Aligned_cols=102 Identities=26% Similarity=0.468 Sum_probs=71.4
Q ss_pred CcEEEeeCCCCC-CcchhhhCCCCCcEEecCCCCCC-cCccccCCCCCCCEEEeeCCCCC-CcccccCCCCCCcEEEccC
Q 012082 276 LIDLDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDF 352 (471)
Q Consensus 276 L~~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 352 (471)
++.|+|++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 667777777766 56677777777777777777776 66767777777777777777766 4566777777777777777
Q ss_pred CCCC-cchhhhCCC-CCCcEEEeecCC
Q 012082 353 NQLR-ALPEAIGKL-ECLEILTLHYNR 377 (471)
Q Consensus 353 ~~l~-~l~~~l~~l-~~L~~L~l~~~~ 377 (471)
|.+. .+|..++.. .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 7774 566665543 356667777764
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=1.1e-08 Score=99.31 Aligned_cols=268 Identities=18% Similarity=0.105 Sum_probs=176.3
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCC---CchhhcCCCCccEEEeecC-CCCCc--chhhcCCCC
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA---LPSSIAGIKTLKKLDIHSN-QLINL--PDSFGDLIN 275 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~---l~~~i~~l~~L~~L~L~~~-~i~~l--p~~i~~l~~ 275 (471)
..++.|.+.|+.......+-.....++++.+|++.++...+ +...-.+++.|++|++..| .++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 55677777887766666667777889999999998886221 2223367889999999996 55532 223457999
Q ss_pred CcEEEeeCC-CCC--CcchhhhCCCCCcEEecCCCCCC---cCccccCCCCCCCEEEeeCCC-CCCc--ccccCCCCCCc
Q 012082 276 LIDLDLHAN-RLK--TLPATFGNLINLMNLDLGSNEFT---HLPDTIGCLTSLKTLNVETNE-LEDL--PYTIGNCSSLT 346 (471)
Q Consensus 276 L~~L~L~~~-~l~--~lp~~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~-l~~l--~~~l~~l~~L~ 346 (471)
|++|++++| +|+ .+-....++..++.+.+.+|.-. .+-..-+.+.-+..+++..|. ++.. -..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999998 454 23334566777788877776322 111111233445556655553 3322 12224567888
Q ss_pred EEEccCCCC-Ccc-hhhh-CCCCCCcEEEeecCC-CCC--CchhccCCCCCcEEEeeCCCCC---cchhhhcCCCCCcEE
Q 012082 347 ELRLDFNQL-RAL-PEAI-GKLECLEILTLHYNR-IKG--LPTTIGNLTKLKELDVSFNELE---SITENLCFAVSLKKL 417 (471)
Q Consensus 347 ~L~l~~~~l-~~l-~~~l-~~l~~L~~L~l~~~~-l~~--l~~~l~~l~~L~~L~L~~n~l~---~l~~~l~~~~~L~~L 417 (471)
.|..+++.. +.. -..+ .+.++|+.|.+.+|+ +++ +...-.+++.|+.+++..+... .+.....+++.|++|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 888887654 222 2233 478899999999985 555 3233356889999999988765 244444578899999
Q ss_pred EccCCcCCC----CccchhccCCCCccEEEeecCCCC--cCchhhhcCCCCcEEEccC
Q 012082 418 NVGNNFADL----RALPRSIGNLEMLEQLDISDDQIR--ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 418 ~L~~n~~~l----~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~l~~ 469 (471)
.+++|.... ..+...-..+..|..+.++++... .....+..+++|+.+.+++
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 999873221 222333456778999999998766 4456788999999887764
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=2e-07 Score=67.73 Aligned_cols=59 Identities=37% Similarity=0.679 Sum_probs=52.4
Q ss_pred CCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCC
Q 012082 228 KDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRL 286 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l 286 (471)
++|++|++++|.+..+| ..|.++++|++|++++|.+..++ ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999887 46789999999999999999885 5789999999999999974
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=3.3e-07 Score=84.41 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=114.2
Q ss_pred chhhhCCCCCcEEecCCCCCC-cC----ccccCCCCCCCEEEeeCCCCCCcc--------------cccCCCCCCcEEEc
Q 012082 290 PATFGNLINLMNLDLGSNEFT-HL----PDTIGCLTSLKTLNVETNELEDLP--------------YTIGNCSSLTELRL 350 (471)
Q Consensus 290 p~~l~~l~~L~~L~l~~~~l~-~l----~~~l~~l~~L~~L~l~~~~l~~l~--------------~~l~~l~~L~~L~l 350 (471)
...+-+|++|+..++|.|-+. .. .+.+++-+.|.+|.+++|++..+. ....+-|.|+....
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 356789999999999999766 33 345678889999999999877432 12345678999999
Q ss_pred cCCCCCcchh-----hhCCCCCCcEEEeecCCCCC------CchhccCCCCCcEEEeeCCCCCc-----chhhhcCCCCC
Q 012082 351 DFNQLRALPE-----AIGKLECLEILTLHYNRIKG------LPTTIGNLTKLKELDVSFNELES-----ITENLCFAVSL 414 (471)
Q Consensus 351 ~~~~l~~l~~-----~l~~l~~L~~L~l~~~~l~~------l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~~~~L 414 (471)
..|.+.+.+. .+....+|+.+.+..|.|.. +...+..+.+|+.|+|..|-++. +...++.-+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 9998876543 23444689999999998865 12345668899999999998872 33445555668
Q ss_pred cEEEccCCcCCCCccchhc-----cCCCCccEEEeecCCCC
Q 012082 415 KKLNVGNNFADLRALPRSI-----GNLEMLEQLDISDDQIR 450 (471)
Q Consensus 415 ~~L~L~~n~~~l~~lp~~l-----~~l~~L~~L~L~~n~l~ 450 (471)
+.|.+.+|..+-......+ ...|+|..|...+|.+.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 9999988844333222222 23688888888877554
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=3.8e-08 Score=81.51 Aligned_cols=110 Identities=21% Similarity=0.339 Sum_probs=80.1
Q ss_pred CccEEEeeCCCCCCCchh---hcCCCCccEEEeecCCCCCcchhhcC-CCCCcEEEeeCCCCCCcchhhhCCCCCcEEec
Q 012082 229 DVTELNLSENRIMALPSS---IAGIKTLKKLDIHSNQLINLPDSFGD-LINLIDLDLHANRLKTLPATFGNLINLMNLDL 304 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~---i~~l~~L~~L~L~~~~i~~lp~~i~~-l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 304 (471)
.+..++|++|.+..+++. +.+..+|+..+|++|.+..+|..|.. .+.+++|++.+|.|..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445567777777655443 45556777778888888877776643 44778888888888888887888888888888
Q ss_pred CCCCCCcCccccCCCCCCCEEEeeCCCCCCcccc
Q 012082 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYT 338 (471)
Q Consensus 305 ~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 338 (471)
+.|.+...|..+..+.+|-.|+..+|.+..++..
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 8888887777777777777777777766666544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=3.5e-06 Score=83.79 Aligned_cols=133 Identities=20% Similarity=0.300 Sum_probs=84.5
Q ss_pred hcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCC-CCCCcchhhhCCCCCcEEecCCC-CCCcCccccCCCCCCCE
Q 012082 247 IAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHAN-RLKTLPATFGNLINLMNLDLGSN-EFTHLPDTIGCLTSLKT 324 (471)
Q Consensus 247 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~ 324 (471)
+..+.++++|++++|.++.+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4556889999999998888872 2346999999886 566777655 358899999888 6666664 4666
Q ss_pred EEeeCCCCC---CcccccCCCCCCcEEEccCCCC---CcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeC
Q 012082 325 LNVETNELE---DLPYTIGNCSSLTELRLDFNQL---RALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSF 398 (471)
Q Consensus 325 L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~l---~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~ 398 (471)
|++.++... .+|. +|+.|.+.+++. ..++. .-.++|+.|.+++|....+|..+. .+|+.|.++.
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 777665433 3343 456666643221 11111 012477888887777655554433 5777777766
Q ss_pred CC
Q 012082 399 NE 400 (471)
Q Consensus 399 n~ 400 (471)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 53
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=5.3e-06 Score=82.56 Aligned_cols=133 Identities=24% Similarity=0.361 Sum_probs=92.3
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecC-CCCCcchhhcCCCCCcEEEeeCC-CCCCcchhhhCCCCCcE
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSN-QLINLPDSFGDLINLIDLDLHAN-RLKTLPATFGNLINLMN 301 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~l~~l~~L~~ 301 (471)
+..++.++.|++++|.+..+|. + -.+|+.|.+++| .++.+|..+ ..+|++|++++| .+..+|. +|++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4457899999999999998883 2 236999999986 667778765 368999999999 7777775 4677
Q ss_pred EecCCCCC---CcCccccCCCCCCCEEEeeCCCCC---CcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeec
Q 012082 302 LDLGSNEF---THLPDTIGCLTSLKTLNVETNELE---DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHY 375 (471)
Q Consensus 302 L~l~~~~l---~~l~~~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 375 (471)
|+++++.. ..+|. +|+.|.+.++... .++. .-.++|+.|.+++|....+|..+. .+|+.|.++.
T Consensus 117 L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 77776654 34454 4666666443211 1111 112589999999888766665443 5888998877
Q ss_pred CC
Q 012082 376 NR 377 (471)
Q Consensus 376 ~~ 377 (471)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 64
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.20 E-value=1e-06 Score=94.54 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=103.8
Q ss_pred hhccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCC--CchhhcCCCCccEEEeecCCCCCcchhhcCCC
Q 012082 197 ENSAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA--LPSSIAGIKTLKKLDIHSNQLINLPDSFGDLI 274 (471)
Q Consensus 197 ~~~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~--l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~ 274 (471)
......+++.|+++|...-...|....-..+|.|++|.+++-.+.. +.....++++|+.||+++++++.+ ..+++|+
T Consensus 117 n~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 117 NEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred hHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 4446678999999997766777877777789999999999876653 345568889999999999999988 7789999
Q ss_pred CCcEEEeeCCCCCCcc--hhhhCCCCCcEEecCCCCCCcCc-------cccCCCCCCCEEEeeCCCCC
Q 012082 275 NLIDLDLHANRLKTLP--ATFGNLINLMNLDLGSNEFTHLP-------DTIGCLTSLKTLNVETNELE 333 (471)
Q Consensus 275 ~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~~~l~~l~-------~~l~~l~~L~~L~l~~~~l~ 333 (471)
+|++|.+.+-.+..-. ..+.+|++|++||+|......-+ +.-..|++|+.||.+++.+.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999998887666432 35778999999999987543222 12234778888888877655
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=7.3e-08 Score=79.88 Aligned_cols=106 Identities=27% Similarity=0.399 Sum_probs=49.2
Q ss_pred cEEEeeCCCCCCcchh---hhCCCCCcEEecCCCCCCcCccccC-CCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccC
Q 012082 277 IDLDLHANRLKTLPAT---FGNLINLMNLDLGSNEFTHLPDTIG-CLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDF 352 (471)
Q Consensus 277 ~~L~L~~~~l~~lp~~---l~~l~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 352 (471)
-.++|+.|++..+++. +.+..+|...++++|.+..+|..+. .++.+++|++.+|.+..+|..+..++.|+.|++++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3344445544434332 2233334444555555555544432 22345555555555555554455555555555555
Q ss_pred CCCCcchhhhCCCCCCcEEEeecCCCCCCc
Q 012082 353 NQLRALPEAIGKLECLEILTLHYNRIKGLP 382 (471)
Q Consensus 353 ~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 382 (471)
|.+...|..+..+.++-.|+..+|.+..++
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 555554444444444444444444444433
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.5e-06 Score=93.34 Aligned_cols=80 Identities=23% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCCccEEEeecCCCC--CcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcC--ccccCCCCCCCEE
Q 012082 250 IKTLKKLDIHSNQLI--NLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHL--PDTIGCLTSLKTL 325 (471)
Q Consensus 250 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L 325 (471)
+|+|+.|.+.+..+. ++..-..++++|..||+++++++.+ .++++|++|+.|.+.+-.+..- -..+.+|++|+.|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 445555555554332 2222234455555555555555544 4455555555554444333311 1223344455555
Q ss_pred EeeCC
Q 012082 326 NVETN 330 (471)
Q Consensus 326 ~l~~~ 330 (471)
|++..
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 54443
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=7.2e-06 Score=55.04 Aligned_cols=37 Identities=35% Similarity=0.610 Sum_probs=16.8
Q ss_pred CccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCC
Q 012082 252 TLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKT 288 (471)
Q Consensus 252 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~ 288 (471)
+|++|++++|.|+.+|..+++|++|++|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444444444444444444444444444444444443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=7.6e-06 Score=54.90 Aligned_cols=40 Identities=38% Similarity=0.606 Sum_probs=26.9
Q ss_pred CCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCc
Q 012082 274 INLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLP 313 (471)
Q Consensus 274 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~ 313 (471)
++|++|++++|+|+.+|..+++|++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777766777777777777777766553
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=1.5e-05 Score=70.70 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=58.3
Q ss_pred CccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhh-hCCCCCcEEecCCCCCCcCc--cccCCCCCCCEEEee
Q 012082 252 TLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATF-GNLINLMNLDLGSNEFTHLP--DTIGCLTSLKTLNVE 328 (471)
Q Consensus 252 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~ 328 (471)
+...++|++|.+..++ .|..++.|.+|.+++|+|+.+...+ ..+++|..|.+.+|++..+. +.+..++.|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4555666666665552 3456666777777777776663333 34456677777776666442 234555666666666
Q ss_pred CCCCCCcc----cccCCCCCCcEEEccCC
Q 012082 329 TNELEDLP----YTIGNCSSLTELRLDFN 353 (471)
Q Consensus 329 ~~~l~~l~----~~l~~l~~L~~L~l~~~ 353 (471)
+|.+..-. ..+..+++|+.|++.+-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 66554322 34556666666665543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.3e-05 Score=69.56 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=26.2
Q ss_pred CCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCC-CCCCCEEEeeCCCCC
Q 012082 275 NLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGC-LTSLKTLNVETNELE 333 (471)
Q Consensus 275 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~-l~~L~~L~l~~~~l~ 333 (471)
+...+||++|.+..+ ..+..++.|.+|.+++|.|+.+...+.. +++|..|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 344555555554433 2234444555555555555544333332 233444444444433
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=1.5e-05 Score=73.86 Aligned_cols=100 Identities=29% Similarity=0.266 Sum_probs=68.2
Q ss_pred CCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchh--hhcCCCCCcEEEc
Q 012082 342 CSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITE--NLCFAVSLKKLNV 419 (471)
Q Consensus 342 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~--~l~~~~~L~~L~L 419 (471)
+.+.++|+.++|.+..+. .+..++.|+.|.|+-|.++.+ ..+..|++|++|+|..|.|.++.+ .+.++|+|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345667777777777663 245778888888888888776 456677888888888888876643 4567788888888
Q ss_pred cCCcCCCCccch----hccCCCCccEEE
Q 012082 420 GNNFADLRALPR----SIGNLEMLEQLD 443 (471)
Q Consensus 420 ~~n~~~l~~lp~----~l~~l~~L~~L~ 443 (471)
..|......-+. .+..+|||++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777443332221 245577787775
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00024 Score=65.70 Aligned_cols=59 Identities=31% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCcEEEccCCCCCcchhhhCCCCCCcEEEeecC--CCCC-CchhccCCCCCcEEEeeCCCCC
Q 012082 343 SSLTELRLDFNQLRALPEAIGKLECLEILTLHYN--RIKG-LPTTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 343 ~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~--~l~~-l~~~l~~l~~L~~L~L~~n~l~ 402 (471)
..|+.|.+.++.++.+.. +..+++|++|.++.| ++.. ++.....+|+|++|++++|.+.
T Consensus 43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344444444444443322 334555555666555 2222 3333334455555555555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.04 E-value=0.0002 Score=66.27 Aligned_cols=38 Identities=32% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCCCCcEEEeeCC--CCC-CcchhhhCCCCCcEEecCCCCC
Q 012082 272 DLINLIDLDLHAN--RLK-TLPATFGNLINLMNLDLGSNEF 309 (471)
Q Consensus 272 ~l~~L~~L~L~~~--~l~-~lp~~l~~l~~L~~L~l~~~~l 309 (471)
.+++|++|.++.| ++. .++....++++|++|++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3444444444444 222 2222333334444444444443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.97 E-value=0.0001 Score=76.63 Aligned_cols=105 Identities=23% Similarity=0.160 Sum_probs=44.3
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCC-CC-CC----CchhhcCCCCccEEEeecCC-CCCc-chhh-cCC
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSEN-RI-MA----LPSSIAGIKTLKKLDIHSNQ-LINL-PDSF-GDL 273 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~-~~-~~----l~~~i~~l~~L~~L~L~~~~-i~~l-p~~i-~~l 273 (471)
.++.+.+.++......++......++.|+.|+++++ .. .. .......+++|+.|++.++. ++.. -..+ ..+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 334444444332222223344455556666665542 11 10 01122334555555555554 3321 1111 225
Q ss_pred CCCcEEEeeCCC-CC--CcchhhhCCCCCcEEecCCC
Q 012082 274 INLIDLDLHANR-LK--TLPATFGNLINLMNLDLGSN 307 (471)
Q Consensus 274 ~~L~~L~L~~~~-l~--~lp~~l~~l~~L~~L~l~~~ 307 (471)
++|++|.+.+|. ++ .+-.....+++|++|++++|
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 555555555443 33 22223344555555555555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00011 Score=68.22 Aligned_cols=99 Identities=26% Similarity=0.242 Sum_probs=73.3
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcc--hhhcCCCCCc
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP--DSFGDLINLI 277 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~ 277 (471)
....++.|++.|+..+++ ..+.+++.|.+|.|+-|.|+++ ..+..|..|+.|.|..|.|..+- ..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 455677788888877665 4577888899999998888887 44778888888889888888663 4577888888
Q ss_pred EEEeeCCCC--CCcc----hhhhCCCCCcEEe
Q 012082 278 DLDLHANRL--KTLP----ATFGNLINLMNLD 303 (471)
Q Consensus 278 ~L~L~~~~l--~~lp----~~l~~l~~L~~L~ 303 (471)
+|.|..|.= ..-+ .-+.-|++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888887732 2111 2356788888886
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.0005 Score=71.39 Aligned_cols=179 Identities=21% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCccEEEeeCCC-CCC--CchhhcCCCCccEEEeecC--CCCCc----chhhcCCCCCcEEEeeCCC-CCCc--chhhh
Q 012082 227 LKDVTELNLSENR-IMA--LPSSIAGIKTLKKLDIHSN--QLINL----PDSFGDLINLIDLDLHANR-LKTL--PATFG 294 (471)
Q Consensus 227 l~~L~~L~L~~~~-~~~--l~~~i~~l~~L~~L~L~~~--~i~~l----p~~i~~l~~L~~L~L~~~~-l~~l--p~~l~ 294 (471)
++.|+.|.+.++. +.. +-.....+++|+.|+++++ .+... ......+++|+.|+++++. ++.. ..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5566666666553 222 2334455666666666652 11111 1223345666666666665 3311 11122
Q ss_pred CCCCCcEEecCCCC-CC--cCccccCCCCCCCEEEeeCCCCC---CcccccCCCCCCcEEEccCCCCCcchhhhCCCCCC
Q 012082 295 NLINLMNLDLGSNE-FT--HLPDTIGCLTSLKTLNVETNELE---DLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECL 368 (471)
Q Consensus 295 ~l~~L~~L~l~~~~-l~--~l~~~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L 368 (471)
.+++|++|.+.+|. ++ .+......+++|++|++++|... .+.....++++|+.|.+.... .+..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c~~l 337 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GCPSL 337 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CCccH
Confidence 35666666655554 33 22233344555666666655422 122223345555544332211 12333
Q ss_pred cEEEeecCCC-C--C-CchhccCCCCCcEEEeeCCCCCcch--hhhcCCCCC
Q 012082 369 EILTLHYNRI-K--G-LPTTIGNLTKLKELDVSFNELESIT--ENLCFAVSL 414 (471)
Q Consensus 369 ~~L~l~~~~l-~--~-l~~~l~~l~~L~~L~L~~n~l~~l~--~~l~~~~~L 414 (471)
+.+.+.++.. . . ....+..+++++.+.+..+...... ..+.+++.|
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3333333211 1 1 1234566777777777776644322 334444444
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.17 E-value=4.9e-05 Score=78.34 Aligned_cols=163 Identities=26% Similarity=0.281 Sum_probs=74.1
Q ss_pred cccchhcCCCCCccEEEeeCCCCCCC-----chhhcCC-CCccEEEeecCCCC-----CcchhhcCCCCCcEEEeeCCCC
Q 012082 218 EWLPVSIGKLKDVTELNLSENRIMAL-----PSSIAGI-KTLKKLDIHSNQLI-----NLPDSFGDLINLIDLDLHANRL 286 (471)
Q Consensus 218 ~~l~~~~~~l~~L~~L~L~~~~~~~l-----~~~i~~l-~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l 286 (471)
..+...+.....|..|++++|.+... ...+... ..|++|.+..|.++ .+...+....+++.++++.|.+
T Consensus 105 ~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 105 EELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 33444455555666666666665521 1112222 34555555555544 2344455555666666666654
Q ss_pred C-----Ccchhhh----CCCCCcEEecCCCCCC-----cCccccCCCCC-CCEEEeeCCCCCCc-----ccccCCC-CCC
Q 012082 287 K-----TLPATFG----NLINLMNLDLGSNEFT-----HLPDTIGCLTS-LKTLNVETNELEDL-----PYTIGNC-SSL 345 (471)
Q Consensus 287 ~-----~lp~~l~----~l~~L~~L~l~~~~l~-----~l~~~l~~l~~-L~~L~l~~~~l~~l-----~~~l~~l-~~L 345 (471)
. .++..+. ...++++|++++|.++ .+...+..... +..|++..|.+... ...+..+ ..+
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l 264 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL 264 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh
Confidence 3 1122222 3445555556555544 11122233333 44455555544321 2223333 344
Q ss_pred cEEEccCCCCC-----cchhhhCCCCCCcEEEeecCCCCC
Q 012082 346 TELRLDFNQLR-----ALPEAIGKLECLEILTLHYNRIKG 380 (471)
Q Consensus 346 ~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~l~~ 380 (471)
+.+++..|+++ .+...+..+..++.+.++.|.+.+
T Consensus 265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 55555555543 223334444455555555555444
No 70
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.65 E-value=0.00013 Score=75.16 Aligned_cols=194 Identities=29% Similarity=0.361 Sum_probs=134.2
Q ss_pred CccEEEeeCCCCCC-----CchhhcCCCCccEEEeecCCCCC-----cchhhcCC-CCCcEEEeeCCCCC-----Ccchh
Q 012082 229 DVTELNLSENRIMA-----LPSSIAGIKTLKKLDIHSNQLIN-----LPDSFGDL-INLIDLDLHANRLK-----TLPAT 292 (471)
Q Consensus 229 ~L~~L~L~~~~~~~-----l~~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l-~~L~~L~L~~~~l~-----~lp~~ 292 (471)
.+..|.+.+|.+.. +...+..+.+|..|++++|.+.. +-..+... ..|++|++..|.++ .+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 37888898888774 34557888899999999998872 12223332 45788888888776 34566
Q ss_pred hhCCCCCcEEecCCCCCC-----cCccccC----CCCCCCEEEeeCCCCCC-----cccccCCCCC-CcEEEccCCCCCc
Q 012082 293 FGNLINLMNLDLGSNEFT-----HLPDTIG----CLTSLKTLNVETNELED-----LPYTIGNCSS-LTELRLDFNQLRA 357 (471)
Q Consensus 293 l~~l~~L~~L~l~~~~l~-----~l~~~l~----~l~~L~~L~l~~~~l~~-----l~~~l~~l~~-L~~L~l~~~~l~~ 357 (471)
+....+++.++++.|.+. .++..+. ...++++|++.+|.++. +...+...+. +..|++..|.+..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 777889999999999764 2233333 46788999998887762 2234455555 6778888888753
Q ss_pred -----chhhhCCC-CCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCCc-----chhhhcCCCCCcEEEccC
Q 012082 358 -----LPEAIGKL-ECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELES-----ITENLCFAVSLKKLNVGN 421 (471)
Q Consensus 358 -----l~~~l~~l-~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~-----l~~~l~~~~~L~~L~L~~ 421 (471)
+...+..+ ..++.++++.|.+++ +...+..+++++.+.+++|.+.. +...+.....+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 23345555 678899999998877 55677788899999999998863 233344445566666654
Q ss_pred C
Q 012082 422 N 422 (471)
Q Consensus 422 n 422 (471)
+
T Consensus 328 ~ 328 (478)
T KOG4308|consen 328 T 328 (478)
T ss_pred c
Confidence 4
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.64 E-value=0.043 Score=45.76 Aligned_cols=9 Identities=0% Similarity=0.298 Sum_probs=2.5
Q ss_pred CCCccEEEe
Q 012082 227 LKDVTELNL 235 (471)
Q Consensus 227 l~~L~~L~L 235 (471)
+.+|+.+.+
T Consensus 11 ~~~l~~i~~ 19 (129)
T PF13306_consen 11 CSNLESITF 19 (129)
T ss_dssp -TT--EEEE
T ss_pred CCCCCEEEE
Confidence 334444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.58 E-value=0.042 Score=45.84 Aligned_cols=117 Identities=17% Similarity=0.384 Sum_probs=55.4
Q ss_pred hhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCCCcCcc-ccCCCCCC
Q 012082 246 SIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSL 322 (471)
Q Consensus 246 ~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L 322 (471)
.|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+..+ +..++. .+.++..|+.+.+.. .+..++. .+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456677788888764 455554 34677778888888764 665543 466776788888865 4444433 34557788
Q ss_pred CEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCCCcchh-hhCCCCCC
Q 012082 323 KTLNVETNELEDLPY-TIGNCSSLTELRLDFNQLRALPE-AIGKLECL 368 (471)
Q Consensus 323 ~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L 368 (471)
+.+.+..+ +..++. .+.++ +|+.+.+.. .+..++. .+..+++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 88887654 455543 34454 777777764 3333333 34444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0045 Score=34.63 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=15.4
Q ss_pred CccEEEeecCCCCcCchhhhcC
Q 012082 438 MLEQLDISDDQIRILPDSFRLL 459 (471)
Q Consensus 438 ~L~~L~L~~n~l~~lp~~l~~L 459 (471)
+|++|+|++|+++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4777888888777777766553
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0067 Score=33.90 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=7.1
Q ss_pred CcEEEeeCCCCCCcchh
Q 012082 276 LIDLDLHANRLKTLPAT 292 (471)
Q Consensus 276 L~~L~L~~~~l~~lp~~ 292 (471)
|++|++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.20 E-value=0.00041 Score=63.02 Aligned_cols=87 Identities=25% Similarity=0.313 Sum_probs=67.8
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEe
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLD 303 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 303 (471)
+..+...++||++.|.+..+...+..+..|..|+++.|.+..+|..++.+..+..+++..|..+..|.++...+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 45566778888888877766666666777788888888888888888888888888888888888888888888888888
Q ss_pred cCCCCCC
Q 012082 304 LGSNEFT 310 (471)
Q Consensus 304 l~~~~l~ 310 (471)
+.++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8777654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.77 E-value=0.0017 Score=59.15 Aligned_cols=88 Identities=28% Similarity=0.350 Sum_probs=79.4
Q ss_pred hhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEE
Q 012082 246 SIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTL 325 (471)
Q Consensus 246 ~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L 325 (471)
.+..+...+.||++.|.+..+...|+.++.|..|+++.|++..+|..+..+..++++++..|+....|.+.+..+.++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 46677889999999998888888888899999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCC
Q 012082 326 NVETNELE 333 (471)
Q Consensus 326 ~l~~~~l~ 333 (471)
+..++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 98887643
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.72 E-value=0.038 Score=28.69 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=9.1
Q ss_pred CCccEEEeecCCCCcCc
Q 012082 437 EMLEQLDISDDQIRILP 453 (471)
Q Consensus 437 ~~L~~L~L~~n~l~~lp 453 (471)
++|+.|+|++|+++.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46777777777776655
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.50 E-value=0.053 Score=28.13 Aligned_cols=15 Identities=60% Similarity=0.793 Sum_probs=5.2
Q ss_pred CCcEEEeeCCCCCCc
Q 012082 275 NLIDLDLHANRLKTL 289 (471)
Q Consensus 275 ~L~~L~L~~~~l~~l 289 (471)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.81 E-value=0.38 Score=27.79 Aligned_cols=19 Identities=47% Similarity=0.691 Sum_probs=9.8
Q ss_pred CCCcEEEeeCCCCCCcchh
Q 012082 274 INLIDLDLHANRLKTLPAT 292 (471)
Q Consensus 274 ~~L~~L~L~~~~l~~lp~~ 292 (471)
++|++|+|++|++..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.81 E-value=0.38 Score=27.79 Aligned_cols=19 Identities=47% Similarity=0.691 Sum_probs=9.8
Q ss_pred CCCcEEEeeCCCCCCcchh
Q 012082 274 INLIDLDLHANRLKTLPAT 292 (471)
Q Consensus 274 ~~L~~L~L~~~~l~~lp~~ 292 (471)
++|++|+|++|++..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.24 E-value=0.42 Score=27.59 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=16.3
Q ss_pred CCCccEEEeecCCCCcCchh
Q 012082 436 LEMLEQLDISDDQIRILPDS 455 (471)
Q Consensus 436 l~~L~~L~L~~n~l~~lp~~ 455 (471)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999888864
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.24 E-value=0.42 Score=27.59 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=16.3
Q ss_pred CCCccEEEeecCCCCcCchh
Q 012082 436 LEMLEQLDISDDQIRILPDS 455 (471)
Q Consensus 436 l~~L~~L~L~~n~l~~lp~~ 455 (471)
+++|++|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788999999999888864
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=0.2 Score=44.98 Aligned_cols=80 Identities=19% Similarity=0.130 Sum_probs=48.7
Q ss_pred CCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCC-cc-hhhh-cCCCCCcEEEccCCcCCCCccchhccCCCCccEE
Q 012082 367 CLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELE-SI-TENL-CFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQL 442 (471)
Q Consensus 367 ~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~-~l-~~~l-~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L 442 (471)
.++.++-+++.+... ...+..++.++.|.+.+|..- .. .+.+ +..++|+.|++++|....+.-..++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455666666665552 255677777777877777532 11 1112 2456788888887743333334567778888888
Q ss_pred Eeec
Q 012082 443 DISD 446 (471)
Q Consensus 443 ~L~~ 446 (471)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7766
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.16 E-value=0.22 Score=44.69 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCC-CCCCc-hhcc-CCCCCcEEEeeCCC-CCc-chhhhcCCCCCcEE
Q 012082 344 SLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNR-IKGLP-TTIG-NLTKLKELDVSFNE-LES-ITENLCFAVSLKKL 417 (471)
Q Consensus 344 ~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~-l~~l~-~~l~-~l~~L~~L~L~~n~-l~~-l~~~l~~~~~L~~L 417 (471)
.++.++.+++.+... .+.+..++.++.|.+.+|. +.+.. ..++ -.++|+.|+|++|. |++ -...+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 355666666665432 2346677777777777764 33321 2222 35778888888764 443 23456677778777
Q ss_pred EccC
Q 012082 418 NVGN 421 (471)
Q Consensus 418 ~L~~ 421 (471)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7754
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.73 E-value=1.1 Score=25.97 Aligned_cols=18 Identities=33% Similarity=0.717 Sum_probs=15.3
Q ss_pred CCccEEEeecCCCCcCch
Q 012082 437 EMLEQLDISDDQIRILPD 454 (471)
Q Consensus 437 ~~L~~L~L~~n~l~~lp~ 454 (471)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468899999999998886
No 86
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=73.41 E-value=3.8 Score=30.35 Aligned_cols=28 Identities=50% Similarity=0.691 Sum_probs=17.3
Q ss_pred hHHHHHHHH----HHHhhcCCCC--CChHHHHHH
Q 012082 15 AFVETVEEI----TRLYRSLPPR--PSIEQVEAA 42 (471)
Q Consensus 15 ~~~~~~~~~----~~~~~~l~~r--p~~~~v~~~ 42 (471)
+|+.+|+|| ++++.+|+.| |---++|+|
T Consensus 44 aF~~AV~eva~at~~LL~~L~~~~pP~~R~~~~a 77 (78)
T PF10041_consen 44 AFDRAVAEVAAATRRLLDSLPTRAPPRRREEEAA 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCCccHhhhc
Confidence 577777775 4667777766 333444444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.31 E-value=4.2 Score=42.19 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=38.2
Q ss_pred CCCCCCcEEEeecCCCCCC---chhccCCCCCcEEEeeCC--CCCcchhhhc--CCCCCcEEEccCCcC
Q 012082 363 GKLECLEILTLHYNRIKGL---PTTIGNLTKLKELDVSFN--ELESITENLC--FAVSLKKLNVGNNFA 424 (471)
Q Consensus 363 ~~l~~L~~L~l~~~~l~~l---~~~l~~l~~L~~L~L~~n--~l~~l~~~l~--~~~~L~~L~L~~n~~ 424 (471)
.+.+.+..+++++|++..+ ...-..-|+|+.|+|++| .+...+ ++. ....|++|.+.||..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcc
Confidence 3566777888888876663 333445678888888887 333221 122 344677888888744
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=63.44 E-value=3 Score=23.40 Aligned_cols=13 Identities=46% Similarity=0.585 Sum_probs=5.6
Q ss_pred CCCcEEEeeCCCC
Q 012082 274 INLIDLDLHANRL 286 (471)
Q Consensus 274 ~~L~~L~L~~~~l 286 (471)
++|++|+|++|+|
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 4455555555544
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.61 E-value=6.7 Score=22.82 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=5.4
Q ss_pred CCcEEEeeCCCC
Q 012082 275 NLIDLDLHANRL 286 (471)
Q Consensus 275 ~L~~L~L~~~~l 286 (471)
+|+.|+++.|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444444
No 90
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=59.49 E-value=13 Score=27.36 Aligned_cols=8 Identities=50% Similarity=0.696 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 012082 16 FVETVEEI 23 (471)
Q Consensus 16 ~~~~~~~~ 23 (471)
|+.+|+||
T Consensus 45 Fe~AV~~i 52 (88)
T COG5552 45 FEAAVAEI 52 (88)
T ss_pred HHHHHHHH
Confidence 44444444
No 91
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=59.28 E-value=13 Score=33.29 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHH
Q 012082 13 SSAFVETVEEITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLF 74 (471)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 74 (471)
.....++|+-..+.+++ .|..++.+.+.++.++++...|++-|+.|++-...--++++|.
T Consensus 109 ~q~Lldav~~Al~~~~~--~~~~~~~~~~~~~~l~tLT~RERqVl~~vV~G~~NKqIA~dLg 168 (202)
T COG4566 109 EQDLLDAVERALARDAS--RRAEADRQAAIRARLATLTPRERQVLDLVVRGLMNKQIAFDLG 168 (202)
T ss_pred hHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHcCcccHHHHHHcC
Confidence 34678888888877776 8899999999999999999999999999997666655555443
No 92
>COG5661 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=23 Score=31.32 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=36.7
Q ss_pred HHHHHhhcCCCCCChHHHHH--HH--HHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHHHHHhhcc
Q 012082 22 EITRLYRSLPPRPSIEQVEA--AM--SVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVLQQFKKTM 84 (471)
Q Consensus 22 ~~~~~~~~l~~rp~~~~v~~--~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 84 (471)
|+-+-+.||+|||+=|..-+ |. +.+-+.-.+.+.+++-+..----.++..+++..||-|+++.
T Consensus 142 ~mEkaL~sl~p~~~C~slqak~~~vt~~v~~~hd~~q~~fDrves~nf~~ri~rll~yRler~~~~~ 208 (210)
T COG5661 142 EMEKALLSLRPRPDCESLQAKAAEVTQQVMERHDRAQLRFDRVESHNFEERIMRLLFYRLERMRQTA 208 (210)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHccC
Confidence 56677899999999876433 22 22222223334444444322233456778888888887753
No 93
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=55.29 E-value=8.6 Score=36.71 Aligned_cols=38 Identities=39% Similarity=0.315 Sum_probs=29.5
Q ss_pred cccCCCCCCChh-------HHHHHHHHHHHhhcCCCCC-ChHHHHH
Q 012082 4 LLSKEKHSPSSA-------FVETVEEITRLYRSLPPRP-SIEQVEA 41 (471)
Q Consensus 4 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~rp-~~~~v~~ 41 (471)
+..|.+++||.| -.+.++||+.-++.||++| +++|||-
T Consensus 38 ~~Gk~k~dpS~A~i~V~~~~~~~leeIl~eL~~lGA~~~e~~ev~l 83 (415)
T COG1915 38 NLGKRKTDPSYAEILVSAPDHEHLEEILSELIDLGAVIPEIEEVEL 83 (415)
T ss_pred ecccccCCCCceEEEEeCCCHHHHHHHHHHHHHhCCCCcchhhhcc
Confidence 346778999875 5788999999999999885 4555553
No 94
>KOG4339 consensus RPEL repeat-containing protein [General function prediction only]
Probab=48.64 E-value=19 Score=37.00 Aligned_cols=41 Identities=32% Similarity=0.454 Sum_probs=28.9
Q ss_pred HHH-HHHhhcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHh
Q 012082 21 EEI-TRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEIT 61 (471)
Q Consensus 21 ~~~-~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~ 61 (471)
++| |++.|-|.-||+.||.|.=--+-..-+.++++.-+|+.
T Consensus 410 qqIG~kLiRRLSqRPT~EELEqRNILK~kn~~~eqe~k~E~k 451 (533)
T KOG4339|consen 410 QQIGTKLIRRLSQRPTPEELEQRNILKRKNEAEEQEAKEEKK 451 (533)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHhhhhcccChhhHHHHHHHHH
Confidence 456 78889999999999999755554455555555555554
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=46.47 E-value=98 Score=31.92 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=29.7
Q ss_pred CCcEEEeeCCCCC----cchhhhcCCCCCcEEEccCCcCC---CCccchhccCCCCccEEEeecCCC
Q 012082 390 KLKELDVSFNELE----SITENLCFAVSLKKLNVGNNFAD---LRALPRSIGNLEMLEQLDISDDQI 449 (471)
Q Consensus 390 ~L~~L~L~~n~l~----~l~~~l~~~~~L~~L~L~~n~~~---l~~lp~~l~~l~~L~~L~L~~n~l 449 (471)
-+..+.++.|... .....+..-+.+.+|.+++|..+ -.-+|.......++..+..+.|..
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 3556666666554 23334455566777777777221 112333333344455555444433
No 96
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.41 E-value=16 Score=21.48 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=11.7
Q ss_pred CCccEEEeecCCCC
Q 012082 437 EMLEQLDISDDQIR 450 (471)
Q Consensus 437 ~~L~~L~L~~n~l~ 450 (471)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57888999998886
No 97
>PLN03075 nicotianamine synthase; Provisional
Probab=41.98 E-value=38 Score=32.82 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCh---HHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHHHHHhhcchhhhc---
Q 012082 16 FVETVEEITRLYRSLPPRPSI---EQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVLQQFKKTMVLFQS--- 89 (471)
Q Consensus 16 ~~~~~~~~~~~~~~l~~rp~~---~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--- 89 (471)
.+..|++|..+|..+...|+- .+| .....+|..+.....+.+|. .|...+|+|++.+.+.++
T Consensus 8 ~~~~i~~i~~~y~~i~~l~~l~ps~~v-----------~~lf~~Lv~~c~~~~~~~~~-~l~~~i~~~~~~l~~l~~~ae 75 (296)
T PLN03075 8 EELLVEKICDLYAQISKLESLKPSKEV-----------NTLFTQLVSTCIPPSSIDVT-KLCEEIQEMRSKLIKLCGEAE 75 (296)
T ss_pred HHHHHHHHHHHHHHHhhCcccCCchhH-----------HHHHHHHHHHhCCCCcchHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 466889999999876655541 122 45668888888767777775 788889999999888554
Q ss_pred -hHHHHHhhhhhhh
Q 012082 90 -CEQRKEASHLVEV 102 (471)
Q Consensus 90 -~~~~~~~~~~~~~ 102 (471)
+-|...++.+...
T Consensus 76 ~~lE~~~a~~i~~~ 89 (296)
T PLN03075 76 GLLEAHFSTILGSF 89 (296)
T ss_pred HHHHHHHHHHHhcC
Confidence 4455555555543
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.68 E-value=16 Score=38.00 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=34.8
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCC--CCCCCchhhcCC--CCccEEEeecCCCC
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSEN--RIMALPSSIAGI--KTLKKLDIHSNQLI 264 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~--~~~~l~~~i~~l--~~L~~L~L~~~~i~ 264 (471)
...+..++++++....++.+.......++|+.|+|++| .+... ..+.++ .-|+.|-+.||+++
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 34555666666666666666666666667777777766 22211 112222 34666666666655
No 99
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=40.53 E-value=38 Score=29.10 Aligned_cols=47 Identities=26% Similarity=0.402 Sum_probs=28.9
Q ss_pred HHhhcCCCCC-ChHHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChH
Q 012082 25 RLYRSLPPRP-SIEQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSE 71 (471)
Q Consensus 25 ~~~~~l~~rp-~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 71 (471)
|--.-+||+| +.|+|++--..+.+....+.+.+-+...-|.||+|.+
T Consensus 9 Ra~~GipPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~ 56 (154)
T PF11791_consen 9 RAALGIPPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE 56 (154)
T ss_dssp HHCTT-------HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh
Confidence 4445789999 7888888888998888888888888888999999975
No 100
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.65 E-value=54 Score=33.08 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=29.8
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHhh
Q 012082 23 ITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEITK 62 (471)
Q Consensus 23 ~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 62 (471)
+.|+++| =-+|+.+||-.+|.+.=+|++.|+|-|.+
T Consensus 178 L~rLLkS----n~PeDLqaANkLIK~lVkeee~k~eKisk 213 (594)
T KOG1086|consen 178 LARLLKS----NHPEDLQAANKLIKTLVKEEEHKLEKISK 213 (594)
T ss_pred HHHHHhc----CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 34599999999999999999999999985
No 101
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=33.10 E-value=85 Score=28.78 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChHH----H--HHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHHHHHhhcchhh
Q 012082 15 AFVETVEEITRLYRSLP-PRPSIEQ----V--EAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVLQQFKKTMVLF 87 (471)
Q Consensus 15 ~~~~~~~~~~~~~~~l~-~rp~~~~----v--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 87 (471)
++.+.|...-.++|++| +|+++=| | |+...-+.++|.+.+ ..+.+....++-+++||+.+.+.+|
T Consensus 23 ~~~~lvk~al~lL~~lPaaR~AVley~~~vf~eaV~~~~~~~E~~~~--------~~~~~~~~~~~~~ai~ei~~~L~~f 94 (213)
T PF14837_consen 23 SVEDLVKCALSLLRSLPAARDAVLEYFGLVFDEAVHLYLSPKENDAQ--------NNKQQQDEADLDEAIQEIHDVLSRF 94 (213)
T ss_pred cHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------ccccCCCCccHHHHHHHHHHHHHHH
Confidence 66788888999999999 7888766 1 333333444443333 2333444456667777777777665
Q ss_pred h
Q 012082 88 Q 88 (471)
Q Consensus 88 ~ 88 (471)
-
T Consensus 95 v 95 (213)
T PF14837_consen 95 V 95 (213)
T ss_pred H
Confidence 4
No 102
>PRK12334 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=32.90 E-value=1.3e+02 Score=28.78 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=20.6
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCChHH
Q 012082 10 HSPSSAFVETVEEITRLYRSLPPRPSIEQ 38 (471)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~rp~~~~ 38 (471)
.+|-+++.+++ +||+..|+-||-+...+
T Consensus 58 ~~~~~aL~~a~-~I~~rlr~~gpWd~~QT 85 (277)
T PRK12334 58 DQPGARLLDAV-AVMDRLRSPGPWESEQT 85 (277)
T ss_pred ccchHHHHHHH-HHHHHHhCCCCCCcccc
Confidence 34556777776 89999999887776654
No 103
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=31.63 E-value=1.1e+02 Score=23.37 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 012082 10 HSPSSAFVETVEEITRLYRSLPPRPSIEQVEAAMSVLQ 47 (471)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~ 47 (471)
+..+++.+..++.+++-|.... +|+.|-|..|-+.+-
T Consensus 26 ~~~~at~E~l~~~L~~~yp~i~-~Ps~e~l~~~L~~Li 62 (80)
T PF10264_consen 26 AGQPATQETLREHLRKHYPGIA-IPSQEVLYNTLGTLI 62 (80)
T ss_pred cCCcchHHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHH
Confidence 4467788888899999999865 999999999877653
No 104
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=30.39 E-value=2.3e+02 Score=24.02 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHHh
Q 012082 19 TVEEITRLYRSLPPRPSIEQVEAAMSVLQ 47 (471)
Q Consensus 19 ~~~~~~~~~~~l~~rp~~~~v~~~~~~~~ 47 (471)
.+.|+..++|+||.-|+.+|+......+.
T Consensus 26 ~~~el~~~lr~lg~~~t~~el~~~~~~~D 54 (151)
T KOG0027|consen 26 SVEELGAVLRSLGQNPTEEELRDLIKEID 54 (151)
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 36899999999999999999987776654
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.05 E-value=40 Score=19.15 Aligned_cols=11 Identities=45% Similarity=0.489 Sum_probs=6.9
Q ss_pred CCCcEEecCCC
Q 012082 297 INLMNLDLGSN 307 (471)
Q Consensus 297 ~~L~~L~l~~~ 307 (471)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666666
No 106
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=27.34 E-value=42 Score=19.56 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=11.4
Q ss_pred hhcCCCCCChHHHHH
Q 012082 27 YRSLPPRPSIEQVEA 41 (471)
Q Consensus 27 ~~~l~~rp~~~~v~~ 41 (471)
-+-|.-||+.||...
T Consensus 4 ~~kl~~RP~~eeLv~ 18 (26)
T smart00707 4 NRKLSQRPTREELEE 18 (26)
T ss_pred HHHHHcCCCHHHHHH
Confidence 355678999999864
No 107
>PF13559 DUF4129: Domain of unknown function (DUF4129)
Probab=27.00 E-value=98 Score=22.24 Aligned_cols=33 Identities=39% Similarity=0.599 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcC--CCC-CChHHHHHHHHHHhhh
Q 012082 17 VETVEEITRLYRSL--PPR-PSIEQVEAAMSVLQTV 49 (471)
Q Consensus 17 ~~~~~~~~~~~~~l--~~r-p~~~~v~~~~~~~~~~ 49 (471)
.+.+++++++|... |.| |+.|+++.++..++.+
T Consensus 37 ~~~~~~lt~~ye~~~Yg~~~~~~~~~~~~~~~~~~l 72 (72)
T PF13559_consen 37 AEALEELTRLYERARYGGRPPSAEEFQRAREALRRL 72 (72)
T ss_pred hHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcC
Confidence 45677788877654 667 4888888888877653
No 108
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=25.88 E-value=4.2e+02 Score=27.60 Aligned_cols=55 Identities=22% Similarity=0.156 Sum_probs=28.9
Q ss_pred CcEEEeecCCCCCC----chhccCCCCCcEEEeeCCCCCcc-----hhhhcCCCCCcEEEccCC
Q 012082 368 LEILTLHYNRIKGL----PTTIGNLTKLKELDVSFNELESI-----TENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 368 L~~L~l~~~~l~~l----~~~l~~l~~L~~L~L~~n~l~~l-----~~~l~~~~~L~~L~L~~n 422 (471)
+..+.++.+.+..- -..+..-+.+.+|++++|..... +..+....+++....+.|
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC
Confidence 45556666655442 23445556677777777765532 233333444555555544
No 109
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=25.53 E-value=61 Score=22.09 Aligned_cols=15 Identities=47% Similarity=0.795 Sum_probs=12.1
Q ss_pred CCCCChHHHHHHHHH
Q 012082 31 PPRPSIEQVEAAMSV 45 (471)
Q Consensus 31 ~~rp~~~~v~~~~~~ 45 (471)
||.|+.||..++++-
T Consensus 6 ~~qpS~eE~k~~e~~ 20 (49)
T PF10642_consen 6 PPQPSEEEIKAAEAQ 20 (49)
T ss_pred CCCCCHHHHHHHHHH
Confidence 588999999887654
No 110
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.89 E-value=1.2e+02 Score=23.71 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=41.2
Q ss_pred hcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHHHHHhh
Q 012082 28 RSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVLQQFKK 82 (471)
Q Consensus 28 ~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (471)
+|.--.|+-|.-|+|+.....++-+.+-.+.+.+....++.+++..-.+.|+..|
T Consensus 37 ~s~~~k~~~dk~~~all~a~~ll~~~ivllkel~~~Aeseeake~irq~rq~~Ek 91 (103)
T COG4847 37 ESKRKKPGGDKDEVALLLANLLLLYLIVLLKELAVIAESEEAKESIRQVRQEVEK 91 (103)
T ss_pred HHHhcCcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4555678899999999999999999999999998876666665555444444433
No 111
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.28 E-value=3.2e+02 Score=22.34 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHH
Q 012082 15 AFVETVEEITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVL 77 (471)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 77 (471)
...++|+|++++.. + .|.+..+|+.+-++....|-.|.--.+.+-.++++-.++
T Consensus 52 ~a~e~veEL~~i~~-~--------~e~~avkIadI~P~t~~ElRsIla~e~~~~s~E~l~~Il 105 (114)
T COG1460 52 KARELVEELLSIVK-M--------SEKIAVKIADIMPRTPDELRSILAKERVMLSDEELDKIL 105 (114)
T ss_pred HHHHHHHHHHhhcc-c--------cHHHHHHHHHhCCCCHHHHHHHHHHccCCCCHHHHHHHH
Confidence 45688999998876 4 678888899888888888888774444443444444444
No 112
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=23.18 E-value=1e+02 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=19.7
Q ss_pred HHHHHHHhhc-----CCCCCChHHHHHHHHHH
Q 012082 20 VEEITRLYRS-----LPPRPSIEQVEAAMSVL 46 (471)
Q Consensus 20 ~~~~~~~~~~-----l~~rp~~~~v~~~~~~~ 46 (471)
..|++.+.++ +|.+|+.++|++....+
T Consensus 29 ~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~ 60 (88)
T cd05027 29 KSELKELINNELSHFLEEIKEQEVVDKVMETL 60 (88)
T ss_pred HHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHh
Confidence 3577777787 88888888887766654
No 113
>PF08944 p47_phox_C: NADPH oxidase subunit p47Phox, C terminal domain; InterPro: IPR015039 The C-terminal domain of the phagocyte NADPH oxidase subunit p47Phox contains conserved PxxP motifs that allow binding to SH3 domains, with subsequent activation of the NADPH oxidase, and generation of superoxide, which plays a crucial role in host defence against microbial infection []. ; PDB: 1K4U_P 1UEC_A.
Probab=22.61 E-value=38 Score=23.88 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=3.4
Q ss_pred hcCCCCCChHHH
Q 012082 28 RSLPPRPSIEQV 39 (471)
Q Consensus 28 ~~l~~rp~~~~v 39 (471)
-..||||+.|++
T Consensus 29 P~VPPRPS~~~I 40 (58)
T PF08944_consen 29 PAVPPRPSPELI 40 (58)
T ss_dssp --------HHHH
T ss_pred CCCCCCCCHHHH
Confidence 345999999986
No 114
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=22.48 E-value=2.2e+02 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=17.8
Q ss_pred hhcCCCCChHHHHHHHHHHhhcc
Q 012082 62 KQEKPRDVSEDLFSVLQQFKKTM 84 (471)
Q Consensus 62 ~~~~~~~~~~~l~~~~~~~~~~~ 84 (471)
....+.++.++++.+||.-+|.|
T Consensus 65 ~~~~~~Gl~dDlle~Lq~yQk~M 87 (95)
T PF08289_consen 65 HPKNSEGLADDLLENLQAYQKRM 87 (95)
T ss_pred CCCCccchHHHHHHHHHHHHHHH
Confidence 45567799999999998766654
No 115
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=21.62 E-value=1.3e+02 Score=27.96 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=26.6
Q ss_pred HHHHHhhhhhhhhhHhhhhHHHHHhhcccccCCc
Q 012082 91 EQRKEASHLVEVDKLYGIFDELVRRASGLVSGDN 124 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~li~~a~~~~~~~~ 124 (471)
++...-..+.++|..+...+.+|.+|..+.....
T Consensus 37 kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~~ 70 (236)
T PF12269_consen 37 KQQKVRNRLQELEKRFKELEAIIARAKQFTVDQD 70 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 3444456788999999999999999998876543
No 116
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=21.61 E-value=58 Score=27.59 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCCCCChHHHHHHHH
Q 012082 21 EEITRLYRSLPPRPSIEQVEAAMS 44 (471)
Q Consensus 21 ~~~~~~~~~l~~rp~~~~v~~~~~ 44 (471)
+|+|.++-+||.|=+-||||.--+
T Consensus 108 aeLRhvLttlGekl~eeEVe~Lla 131 (152)
T KOG0030|consen 108 AELRHVLTTLGEKLTEEEVEELLA 131 (152)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHc
Confidence 799999999999999999996544
No 117
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=21.45 E-value=53 Score=20.63 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCCCCCChHHHHH
Q 012082 17 VETVEEITRLYRSLPPRPSIEQVEA 41 (471)
Q Consensus 17 ~~~~~~~~~~~~~l~~rp~~~~v~~ 41 (471)
.+||+|.-++...|..| |+|||.
T Consensus 13 V~AvqeLck~t~~Le~r--I~ele~ 35 (36)
T PF13887_consen 13 VGAVQELCKLTDNLETR--IDELER 35 (36)
T ss_pred HHHHHHHHHHhccHHHH--HHHHhh
Confidence 56788888888888776 555653
No 118
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=20.19 E-value=1.8e+02 Score=24.10 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhchHHh
Q 012082 16 FVETVEEITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQ 54 (471)
Q Consensus 16 ~~~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~ 54 (471)
+--+|.|+..++ |.+|..|+|..+-..+...-.-.+
T Consensus 47 I~~aV~~m~~Lf---P~~~~~e~vr~~L~~L~~~~~~Lq 82 (123)
T PF12205_consen 47 IRSAVTEMAALF---PKDPRSETVRSSLRQLTSSAYRLQ 82 (123)
T ss_dssp HHHHHHHHHHTS----SSB--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCccCChHHHHHHHHHHHHHHHHH
Confidence 344566666665 888888888888777665555555
Done!