Query 012082
Match_columns 471
No_of_seqs 418 out of 4318
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 21:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ecn_A Leucine-rich repeat pro 100.0 9.1E-28 3.1E-32 262.9 22.3 266 200-468 446-784 (876)
2 4fmz_A Internalin; leucine ric 100.0 2.1E-26 7.1E-31 228.0 29.3 257 200-469 86-342 (347)
3 4fmz_A Internalin; leucine ric 100.0 2.3E-26 8E-31 227.6 29.5 256 200-469 64-320 (347)
4 4fcg_A Uncharacterized protein 100.0 1.6E-27 5.6E-32 234.5 19.8 223 227-450 80-314 (328)
5 4fcg_A Uncharacterized protein 100.0 3.3E-27 1.1E-31 232.3 20.4 220 249-469 79-310 (328)
6 3o6n_A APL1; leucine-rich repe 100.0 6.7E-27 2.3E-31 235.5 22.9 258 201-469 68-348 (390)
7 4eco_A Uncharacterized protein 99.9 9.1E-28 3.1E-32 257.0 16.6 266 200-468 204-544 (636)
8 4eco_A Uncharacterized protein 99.9 8.6E-28 2.9E-32 257.2 16.1 266 200-469 247-575 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 7E-27 2.4E-31 255.9 23.0 238 229-469 549-836 (876)
10 1ogq_A PGIP-2, polygalacturona 99.9 8.6E-28 3E-32 234.9 13.3 236 229-467 51-298 (313)
11 3v47_A TOLL-like receptor 5B a 99.9 1.6E-26 5.4E-31 237.3 23.2 125 343-469 275-404 (455)
12 3oja_B Anopheles plasmodium-re 99.9 8.5E-27 2.9E-31 247.8 21.5 258 201-469 74-354 (597)
13 1xku_A Decorin; proteoglycan, 99.9 3.9E-26 1.3E-30 224.6 24.4 260 202-469 52-328 (330)
14 1xku_A Decorin; proteoglycan, 99.9 7.2E-26 2.5E-30 222.7 25.9 256 203-469 32-302 (330)
15 2id5_A Lingo-1, leucine rich r 99.9 6.9E-26 2.4E-30 234.2 24.9 265 201-469 55-329 (477)
16 2id5_A Lingo-1, leucine rich r 99.9 7.7E-26 2.6E-30 233.8 25.3 264 202-469 32-305 (477)
17 1o6v_A Internalin A; bacterial 99.9 2.4E-25 8.3E-30 229.5 28.9 254 201-469 89-362 (466)
18 2z7x_B TOLL-like receptor 1, v 99.9 9.4E-26 3.2E-30 235.6 25.6 262 200-469 43-477 (520)
19 2ft3_A Biglycan; proteoglycan, 99.9 4E-26 1.4E-30 224.8 21.4 259 202-469 54-329 (332)
20 1o6v_A Internalin A; bacterial 99.9 2.2E-25 7.4E-30 229.9 27.5 255 200-469 66-340 (466)
21 1ogq_A PGIP-2, polygalacturona 99.9 5.4E-27 1.9E-31 229.2 14.0 249 202-453 50-308 (313)
22 3rgz_A Protein brassinosteroid 99.9 3.8E-26 1.3E-30 249.8 21.8 242 227-469 393-713 (768)
23 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-26 1.6E-30 224.4 20.1 255 203-469 34-303 (332)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-25 1.1E-29 233.9 25.1 147 319-469 352-506 (562)
25 3o6n_A APL1; leucine-rich repe 99.9 2E-25 6.7E-30 224.8 22.1 260 200-469 43-327 (390)
26 3t6q_A CD180 antigen; protein- 99.9 2.9E-25 9.9E-30 236.2 22.6 128 339-468 274-408 (606)
27 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-25 8.8E-30 236.6 20.7 261 200-469 283-554 (606)
28 3vq2_A TLR4, TOLL-like recepto 99.9 3.9E-25 1.3E-29 235.2 21.8 110 200-311 54-167 (606)
29 3rgz_A Protein brassinosteroid 99.9 9E-26 3.1E-30 246.7 17.1 241 228-469 294-547 (768)
30 3t6q_A CD180 antigen; protein- 99.9 6.8E-25 2.3E-29 233.4 23.3 263 203-469 255-556 (606)
31 3oja_B Anopheles plasmodium-re 99.9 3.9E-25 1.3E-29 235.0 20.9 260 200-469 49-333 (597)
32 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-25 2E-29 229.6 21.8 125 202-332 21-150 (520)
33 2z80_A TOLL-like receptor 2, v 99.9 3.5E-25 1.2E-29 219.9 19.0 258 207-469 36-310 (353)
34 2z66_A Variable lymphocyte rec 99.9 3.4E-25 1.2E-29 215.5 18.5 239 206-450 11-261 (306)
35 3v47_A TOLL-like receptor 5B a 99.9 8.8E-25 3E-29 224.3 22.3 264 202-469 30-380 (455)
36 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-25 8.6E-30 233.8 18.6 264 202-469 26-419 (549)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-24 4.1E-29 223.5 23.2 246 200-469 40-295 (457)
38 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-24 1.1E-28 227.4 27.2 233 202-469 61-293 (622)
39 3bz5_A Internalin-J, INLJ; leu 99.9 4.3E-24 1.5E-28 219.5 25.6 247 199-468 61-326 (457)
40 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-24 4.3E-29 228.5 21.3 128 339-469 357-506 (549)
41 2z66_A Variable lymphocyte rec 99.9 4.9E-25 1.7E-29 214.4 16.7 252 202-459 28-297 (306)
42 2z80_A TOLL-like receptor 2, v 99.9 9.6E-25 3.3E-29 216.8 18.6 248 202-453 52-317 (353)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-24 1.9E-28 224.6 25.3 259 202-469 52-482 (562)
44 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-25 3.7E-30 220.4 10.6 237 222-468 28-270 (317)
45 2z63_A TOLL-like receptor 4, v 99.9 1.8E-24 6.1E-29 228.2 20.3 109 200-310 50-162 (570)
46 3zyi_A Leucine-rich repeat-con 99.9 5.6E-24 1.9E-28 218.4 23.0 238 205-450 57-303 (452)
47 3zyj_A Leucine-rich repeat-con 99.9 5.9E-24 2E-28 217.5 22.4 238 205-450 46-292 (440)
48 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 229.8 12.0 232 226-467 32-269 (487)
49 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4.2E-30 219.5 6.0 236 226-469 41-305 (312)
50 1ziw_A TOLL-like receptor 3; i 99.9 1.6E-23 5.5E-28 225.8 23.1 247 223-469 68-362 (680)
51 3j0a_A TOLL-like receptor 5; m 99.9 2E-23 6.9E-28 230.4 23.3 264 202-469 24-371 (844)
52 3zyi_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 213.8 21.6 218 202-422 75-300 (452)
53 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-23 3.9E-28 202.6 18.0 247 205-458 14-270 (285)
54 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-23 1.2E-27 219.4 23.2 229 200-460 79-308 (622)
55 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-23 1.3E-27 198.9 20.9 217 230-450 13-238 (285)
56 2z63_A TOLL-like receptor 4, v 99.9 9.1E-24 3.1E-28 222.7 16.9 244 220-469 274-527 (570)
57 3zyj_A Leucine-rich repeat-con 99.9 5E-23 1.7E-27 210.6 21.7 218 202-422 64-289 (440)
58 1jl5_A Outer protein YOPM; leu 99.9 1.3E-22 4.6E-27 208.1 24.5 242 202-469 131-405 (454)
59 1wwl_A Monocyte differentiatio 99.9 1E-24 3.4E-29 213.0 7.4 217 230-451 65-310 (312)
60 1jl5_A Outer protein YOPM; leu 99.9 8.6E-23 2.9E-27 209.6 22.1 238 202-468 111-365 (454)
61 3oja_A Leucine-rich immune mol 99.9 1.6E-23 5.5E-28 216.9 16.5 221 239-469 18-246 (487)
62 3o53_A Protein LRIM1, AGAP0063 99.9 4.8E-24 1.6E-28 208.7 11.7 230 230-469 12-246 (317)
63 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-22 4E-27 219.1 23.3 265 202-469 25-338 (680)
64 1h6u_A Internalin H; cell adhe 99.9 1.3E-22 4.5E-27 197.6 18.9 192 224-423 37-228 (308)
65 1h6u_A Internalin H; cell adhe 99.9 3.1E-22 1.1E-26 195.0 19.1 195 201-406 40-234 (308)
66 2z62_A TOLL-like receptor 4, v 99.9 2.8E-22 9.7E-27 191.9 17.8 194 229-422 29-234 (276)
67 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-21 3.8E-26 216.5 25.0 261 200-468 46-389 (844)
68 4g8a_A TOLL-like receptor 4; l 99.9 7.5E-22 2.6E-26 210.2 22.8 104 364-469 467-576 (635)
69 1p9a_G Platelet glycoprotein I 99.9 1.3E-21 4.6E-26 188.8 19.7 214 224-440 6-227 (290)
70 1p9a_G Platelet glycoprotein I 99.9 1.5E-21 5.2E-26 188.4 19.9 197 200-402 8-208 (290)
71 2ca6_A RAN GTPase-activating p 99.9 2E-23 6.8E-28 209.8 6.3 236 216-453 20-319 (386)
72 2o6q_A Variable lymphocyte rec 99.9 5.9E-21 2E-25 182.2 21.4 195 227-423 15-216 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 2.9E-21 9.8E-26 184.9 17.8 215 232-450 11-237 (276)
74 4g8a_A TOLL-like receptor 4; l 99.9 5.7E-21 2E-25 203.4 21.8 131 202-334 52-187 (635)
75 2ca6_A RAN GTPase-activating p 99.9 8.4E-23 2.9E-27 205.3 5.9 229 239-469 20-312 (386)
76 2o6q_A Variable lymphocyte rec 99.9 1.9E-20 6.7E-25 178.6 20.8 195 252-450 17-218 (270)
77 2xwt_C Thyrotropin receptor; s 99.9 4.1E-21 1.4E-25 179.9 15.3 200 240-468 23-234 (239)
78 2xwt_C Thyrotropin receptor; s 99.9 5.1E-21 1.7E-25 179.2 15.3 192 228-422 31-236 (239)
79 1z7x_W Ribonuclease inhibitor; 99.9 2E-22 6.9E-27 206.9 6.0 177 203-379 86-297 (461)
80 3rfs_A Internalin B, repeat mo 99.8 6.7E-21 2.3E-25 182.1 15.0 206 224-438 37-247 (272)
81 3rfs_A Internalin B, repeat mo 99.8 1.3E-20 4.6E-25 180.0 15.7 218 233-461 24-247 (272)
82 3cvr_A Invasion plasmid antige 99.8 1.7E-20 5.8E-25 196.6 17.4 187 228-435 59-252 (571)
83 4glp_A Monocyte differentiatio 99.8 6.8E-21 2.3E-25 185.6 13.2 218 229-451 65-308 (310)
84 1z7x_W Ribonuclease inhibitor; 99.8 6.4E-22 2.2E-26 203.2 5.9 270 200-469 26-350 (461)
85 2ast_B S-phase kinase-associat 99.8 1.9E-21 6.4E-26 191.3 7.7 247 202-457 47-314 (336)
86 2ast_B S-phase kinase-associat 99.8 3.8E-21 1.3E-25 189.1 9.0 233 228-463 47-299 (336)
87 3cvr_A Invasion plasmid antige 99.8 7E-20 2.4E-24 192.0 16.9 186 201-409 58-251 (571)
88 1h6t_A Internalin B; cell adhe 99.8 2.1E-19 7.3E-24 173.4 16.8 173 225-404 43-215 (291)
89 4glp_A Monocyte differentiatio 99.8 1E-19 3.5E-24 177.2 14.4 220 200-423 62-305 (310)
90 3goz_A Leucine-rich repeat-con 99.8 1.4E-20 4.8E-25 187.4 7.7 232 220-451 14-298 (362)
91 1h6t_A Internalin B; cell adhe 99.8 3.7E-19 1.3E-23 171.8 16.3 169 247-422 42-210 (291)
92 3m19_A Variable lymphocyte rec 99.8 2.1E-18 7E-23 162.7 18.1 172 229-402 15-192 (251)
93 3goz_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 184.7 6.1 224 201-424 21-296 (362)
94 1m9s_A Internalin B; cell inva 99.8 4.9E-19 1.7E-23 187.3 12.3 187 229-423 22-208 (605)
95 4ay9_X Follicle-stimulating ho 99.8 4.3E-18 1.5E-22 168.6 18.1 232 206-446 13-255 (350)
96 3ogk_B Coronatine-insensitive 99.8 1.8E-19 6.1E-24 190.8 8.6 129 341-469 376-522 (592)
97 1xeu_A Internalin C; cellular 99.8 2.5E-19 8.5E-24 170.4 7.8 167 229-403 20-186 (263)
98 3m19_A Variable lymphocyte rec 99.8 9.9E-18 3.4E-22 158.0 18.3 173 251-425 14-192 (251)
99 4ay9_X Follicle-stimulating ho 99.8 1E-17 3.5E-22 165.9 17.5 231 231-468 12-254 (350)
100 1m9s_A Internalin B; cell inva 99.8 4.4E-18 1.5E-22 180.0 15.3 172 225-403 40-211 (605)
101 4ezg_A Putative uncharacterize 99.7 1.2E-17 4E-22 151.6 14.2 151 225-379 41-194 (197)
102 3ogk_B Coronatine-insensitive 99.7 8.6E-19 2.9E-23 185.6 7.1 152 204-355 140-305 (592)
103 1xeu_A Internalin C; cellular 99.7 5.5E-18 1.9E-22 161.1 11.6 167 249-423 17-183 (263)
104 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.2E-22 151.4 13.3 151 248-402 41-194 (197)
105 1dce_A Protein (RAB geranylger 99.7 4.6E-20 1.6E-24 194.0 -8.0 193 248-444 346-567 (567)
106 2o6s_A Variable lymphocyte rec 99.7 5E-17 1.7E-21 148.6 13.1 176 254-438 10-190 (208)
107 1dce_A Protein (RAB geranylger 99.7 8.1E-20 2.8E-24 192.1 -6.8 194 270-467 345-567 (567)
108 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 145.9 13.8 174 231-412 10-189 (208)
109 3e6j_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 144.0 15.6 147 231-379 22-172 (229)
110 2p1m_B Transport inhibitor res 99.7 3.6E-18 1.2E-22 180.7 0.4 266 203-469 131-441 (594)
111 3e6j_A Variable lymphocyte rec 99.7 6.4E-16 2.2E-20 143.6 15.3 148 253-402 21-172 (229)
112 2xot_A Amphoterin-induced prot 99.7 2.4E-16 8E-21 156.8 13.1 170 231-402 21-202 (361)
113 2p1m_B Transport inhibitor res 99.7 5.4E-18 1.8E-22 179.4 1.1 268 200-469 154-465 (594)
114 2v9t_B SLIT homolog 2 protein 99.7 7.7E-16 2.6E-20 142.2 14.3 146 231-378 14-164 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 7.3E-16 2.5E-20 142.3 14.1 147 231-379 14-166 (220)
116 2v70_A SLIT-2, SLIT homolog 2 99.7 9.2E-16 3.1E-20 141.6 14.1 147 254-402 14-166 (220)
117 2v9t_B SLIT homolog 2 protein 99.7 1.1E-15 3.6E-20 141.2 14.4 147 254-402 14-165 (220)
118 2ell_A Acidic leucine-rich nuc 99.6 4.1E-16 1.4E-20 137.4 10.6 133 227-360 23-164 (168)
119 2xot_A Amphoterin-induced prot 99.6 7.9E-16 2.7E-20 153.0 13.8 170 253-424 20-201 (361)
120 4b8c_D Glucose-repressible alc 99.6 9.1E-17 3.1E-21 173.9 4.6 113 244-356 217-329 (727)
121 2ell_A Acidic leucine-rich nuc 99.6 8.8E-16 3E-20 135.3 9.6 131 251-382 24-163 (168)
122 4b8c_D Glucose-repressible alc 99.6 2.8E-16 9.7E-21 170.0 4.4 174 229-402 174-354 (727)
123 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.2E-20 129.7 7.5 124 227-351 16-148 (149)
124 1a9n_A U2A', U2A'; complex (nu 99.5 5.3E-15 1.8E-19 131.4 7.1 130 272-402 17-153 (176)
125 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5.1E-19 124.7 9.6 123 343-468 17-148 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.5 7.2E-15 2.5E-19 130.6 7.5 131 224-355 15-152 (176)
127 1w8a_A SLIT protein; signaling 99.5 1E-13 3.5E-18 125.0 12.0 124 231-356 11-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.5 1.9E-13 6.5E-18 123.3 13.1 123 231-355 13-138 (193)
129 1w8a_A SLIT protein; signaling 99.5 1.9E-13 6.6E-18 123.1 12.0 125 254-380 11-140 (192)
130 2wfh_A SLIT homolog 2 protein 99.5 4.3E-13 1.5E-17 121.0 13.1 123 254-378 13-138 (193)
131 1ds9_A Outer arm dynein; leuci 99.5 8.8E-16 3E-20 139.2 -4.8 112 242-355 39-152 (198)
132 3sb4_A Hypothetical leucine ri 99.4 2.6E-13 8.8E-18 133.0 11.4 100 364-467 224-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.4 1.4E-15 4.8E-20 137.9 -4.8 125 253-379 25-153 (198)
134 2o6r_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 113.9 14.5 124 231-356 10-137 (177)
135 2o6r_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 112.7 14.0 126 253-380 9-138 (177)
136 4fdw_A Leucine rich hypothetic 99.3 5.5E-11 1.9E-15 119.5 19.8 233 224-468 132-378 (401)
137 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 108.5 11.8 102 231-334 15-119 (174)
138 2r9u_A Variable lymphocyte rec 99.3 3.2E-11 1.1E-15 106.7 11.8 102 254-357 15-119 (174)
139 4fdw_A Leucine rich hypothetic 99.3 3.1E-10 1.1E-14 114.0 20.3 231 226-469 111-354 (401)
140 3g39_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 106.0 11.5 102 230-333 11-115 (170)
141 3sb4_A Hypothetical leucine ri 99.2 3E-11 1E-15 118.2 10.7 190 250-444 100-328 (329)
142 3g39_A Variable lymphocyte rec 99.2 6.8E-11 2.3E-15 104.2 11.6 102 253-356 11-115 (170)
143 3un9_A NLR family member X1; l 99.2 7.7E-12 2.6E-16 124.5 3.2 105 228-332 72-195 (372)
144 3un9_A NLR family member X1; l 99.1 2.7E-11 9.3E-16 120.5 4.1 152 251-402 72-252 (372)
145 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.9E-14 106.8 10.5 100 233-333 13-116 (347)
146 2ifg_A High affinity nerve gro 98.9 2.5E-09 8.6E-14 105.1 10.7 103 254-357 11-117 (347)
147 2ra8_A Uncharacterized protein 98.9 3.4E-09 1.2E-13 104.7 8.2 81 341-422 250-340 (362)
148 2ra8_A Uncharacterized protein 98.8 9.2E-09 3.2E-13 101.6 8.8 170 252-423 108-318 (362)
149 1io0_A Tropomodulin; LRR prote 98.6 1.4E-08 4.7E-13 90.6 3.1 90 221-310 29-136 (185)
150 4gt6_A Cell surface protein; l 98.6 2.8E-06 9.6E-11 84.8 20.2 83 222-306 81-169 (394)
151 4fs7_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 90.1 14.7 211 245-466 156-394 (394)
152 1io0_A Tropomodulin; LRR prote 98.6 2.3E-08 8E-13 89.1 3.6 111 245-355 30-163 (185)
153 4fs7_A Uncharacterized protein 98.5 2.4E-06 8.2E-11 85.3 17.3 251 202-469 94-375 (394)
154 4gt6_A Cell surface protein; l 98.5 4.5E-06 1.5E-10 83.3 18.5 257 201-467 86-385 (394)
155 4h09_A Hypothetical leucine ri 98.1 0.00036 1.2E-08 68.8 21.9 124 339-468 213-341 (379)
156 4h09_A Hypothetical leucine ri 98.1 0.00041 1.4E-08 68.4 22.2 140 317-463 214-359 (379)
157 3rw6_A Nuclear RNA export fact 97.9 2E-06 6.9E-11 80.8 1.5 61 249-310 168-233 (267)
158 3e4g_A ATP synthase subunit S, 97.7 5.2E-05 1.8E-09 66.2 6.9 97 367-464 62-171 (176)
159 3rw6_A Nuclear RNA export fact 97.7 3E-05 1E-09 72.7 5.5 79 225-304 167-258 (267)
160 1pgv_A TMD-1, tropomodulin TMD 97.7 5E-05 1.7E-09 67.6 6.3 90 359-448 63-168 (197)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 0.00011 3.9E-09 65.3 6.2 105 318-422 39-167 (197)
162 3e4g_A ATP synthase subunit S, 97.4 0.00017 6E-09 62.9 6.2 90 381-470 53-149 (176)
163 3rfe_A Platelet glycoprotein I 95.9 0.011 3.9E-07 48.6 5.9 35 275-309 32-67 (130)
164 3rfe_A Platelet glycoprotein I 95.2 0.025 8.6E-07 46.5 5.5 55 231-287 11-68 (130)
165 2a5y_B CED-4; apoptosis; HET: 73.7 1 3.5E-05 46.4 1.4 34 137-173 432-465 (549)
166 1k4u_P Phagocyte NADPH oxidase 64.2 3.2 0.00011 24.3 1.5 10 30-39 7-16 (32)
167 3ter_A Mammalian stromal inter 53.2 30 0.001 27.9 6.0 38 34-78 3-40 (136)
168 1j7q_A CAVP, calcium vector pr 34.3 34 0.0012 24.3 3.5 32 20-51 33-64 (86)
169 1tiz_A Calmodulin-related prot 29.2 52 0.0018 21.6 3.6 27 20-46 20-46 (67)
170 3okq_A BUD site selection prot 25.4 2.7E+02 0.0092 22.5 7.8 47 16-62 33-79 (141)
171 1wa7_B TIP, hypothetical 28.7 24.0 27 0.00092 19.0 0.8 7 29-35 9-15 (26)
172 2ov9_A Hypothetical protein; r 23.4 57 0.002 28.6 3.5 46 9-54 20-66 (216)
173 2lz0_A Uncharacterized protein 22.1 1.2E+02 0.0041 22.8 4.7 36 247-283 16-52 (100)
174 1s6j_A CDPK, calcium-dependent 21.9 84 0.0029 22.0 3.7 28 19-46 41-68 (87)
175 3i5g_C Myosin catalytic light 21.6 75 0.0026 25.9 3.7 22 20-41 30-51 (159)
176 2jx0_A ARF GTPase-activating p 21.4 2.4E+02 0.0083 22.6 6.3 34 18-54 54-87 (135)
177 2lv7_A Calcium-binding protein 20.7 49 0.0017 24.9 2.1 23 21-43 56-78 (100)
178 2lz0_A Uncharacterized protein 20.2 1.2E+02 0.0042 22.7 4.4 45 262-307 7-53 (100)
179 2b1u_A Calmodulin-like protein 20.1 87 0.003 20.8 3.3 26 20-45 25-50 (71)
No 1
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=9.1e-28 Score=262.91 Aligned_cols=266 Identities=23% Similarity=0.327 Sum_probs=177.8
Q ss_pred cCCCcEEEEecCCCCCcc----c-----------ccchhcC--CCCCccEEEeeCCCCC-CCchhhcCCCCccEEEeecC
Q 012082 200 AKTGAVVLDLRGKLTDQI----E-----------WLPVSIG--KLKDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSN 261 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~----~-----------~l~~~~~--~l~~L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~ 261 (471)
...+++.|+++++..... . .+|..++ ++++|++|++++|.+. .+|..+.++++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 456778888887755431 0 1566666 7788888888887644 46777777888888888877
Q ss_pred C-CCC--cchhhcCCC-------CCcEEEeeCCCCCCcch--hhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeC
Q 012082 262 Q-LIN--LPDSFGDLI-------NLIDLDLHANRLKTLPA--TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVET 329 (471)
Q Consensus 262 ~-i~~--lp~~i~~l~-------~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 329 (471)
. ++. +|..++++. +|++|++++|.++.+|. .+.++++|++|++++|.++.+| .++.+++|+.|++++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 6 663 666555444 77777777777777777 7777777777777777777776 677777777777777
Q ss_pred CCCCCcccccCCCCC-CcEEEccCCCCCcchhhhCCC-------------------------------CCCcEEEeecCC
Q 012082 330 NELEDLPYTIGNCSS-LTELRLDFNQLRALPEAIGKL-------------------------------ECLEILTLHYNR 377 (471)
Q Consensus 330 ~~l~~l~~~l~~l~~-L~~L~l~~~~l~~l~~~l~~l-------------------------------~~L~~L~l~~~~ 377 (471)
|.+..+|..+..+++ |+.|++++|.++.+|..+..+ ++|+.|++++|.
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred CccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 777767766777766 777777777666555443322 245555555555
Q ss_pred CCCCchhc-cCCCCCcEEEeeCCCCCcchhhhcCCC--------CCcEEEccCCcCCCCccchhcc--CCCCccEEEeec
Q 012082 378 IKGLPTTI-GNLTKLKELDVSFNELESITENLCFAV--------SLKKLNVGNNFADLRALPRSIG--NLEMLEQLDISD 446 (471)
Q Consensus 378 l~~l~~~l-~~l~~L~~L~L~~n~l~~l~~~l~~~~--------~L~~L~L~~n~~~l~~lp~~l~--~l~~L~~L~L~~ 446 (471)
++.+|..+ ..+++|+.|+|++|.+..+|..+.... +|+.|+|++| .+..+|..+. .+++|+.|+|++
T Consensus 685 L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L~~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 685 IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN--KLTSLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS--CCCCCCGGGSTTTCTTCCEEECCS
T ss_pred CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC--CCccchHHhhhccCCCcCEEEeCC
Confidence 55555443 356667777777776666665443322 6777777766 4446666665 677777777777
Q ss_pred CCCCcCchhhhcCCCCcEEEcc
Q 012082 447 DQIRILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 447 n~l~~lp~~l~~L~~L~~L~l~ 468 (471)
|+++.+|..+..+++|+.|++.
T Consensus 763 N~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 763 NCFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp SCCSSCCCGGGGCTTCCEEECC
T ss_pred CCCCccchhhhcCCCCCEEECC
Confidence 7777777667777777777664
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.1e-26 Score=227.97 Aligned_cols=257 Identities=23% Similarity=0.337 Sum_probs=177.5
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.|+++++....+ ..+..+++|++|++++|.+..++. +..+++|++|++++|.....+..++.+++|++|
T Consensus 86 ~l~~L~~L~L~~n~i~~~----~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDI----SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp TCTTCCEEECCSSCCCCC----GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred cCCcCCEEEccCCcccCc----hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 445566666665544332 235556666666666666665544 556666666666666333333336666666666
Q ss_pred EeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcch
Q 012082 280 DLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALP 359 (471)
Q Consensus 280 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 359 (471)
++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~ 237 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLS 237 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCc
Confidence 666666665544 6667777777777776666654 6667777777777777666654 677788888888888887776
Q ss_pred hhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCc
Q 012082 360 EAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEML 439 (471)
Q Consensus 360 ~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L 439 (471)
. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+..++ .+..+++|+.|++++|... ...|.+++.+++|
T Consensus 238 ~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L 313 (347)
T 4fmz_A 238 P-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNL 313 (347)
T ss_dssp G-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTC
T ss_pred c-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCC-CcChhHhhccccC
Confidence 6 77888888888888888776 45777888888888888888774 4677888888888887332 2345667888888
Q ss_pred cEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 440 EQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 440 ~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++|++++|+++.+++ +..+++|+.|++.+
T Consensus 314 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp SEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CEEEccCCccccccC-hhhhhccceeehhh
Confidence 888888888887776 88888888888764
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.3e-26 Score=227.61 Aligned_cols=256 Identities=22% Similarity=0.359 Sum_probs=211.9
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.|+++++....+ +. +..+++|++|++++|.+..++ .+.++++|++|++++|.+..++. +..+++|++|
T Consensus 64 ~~~~L~~L~l~~n~i~~~---~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDI---SP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hcCCccEEEccCCccccc---hh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 456788888888755443 33 778888888888888888775 57888888888888888888766 7788888888
Q ss_pred EeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcch
Q 012082 280 DLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALP 359 (471)
Q Consensus 280 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 359 (471)
++++|.....+..+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+.|++++|.+..++
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 88888544444558888888888888888887765 7788889999999988887775 778889999999999888776
Q ss_pred hhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCc
Q 012082 360 EAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEML 439 (471)
Q Consensus 360 ~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L 439 (471)
. +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++| .+..++ .+..+++|
T Consensus 216 ~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n--~l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSN--QISDIS-VLNNLSQL 289 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS--CCCCCG-GGGGCTTC
T ss_pred h-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCC--ccCCCh-hhcCCCCC
Confidence 6 7889999999999999999876 889999999999999998874 5788999999999998 556664 58889999
Q ss_pred cEEEeecCCCCc-CchhhhcCCCCcEEEccC
Q 012082 440 EQLDISDDQIRI-LPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 440 ~~L~L~~n~l~~-lp~~l~~L~~L~~L~l~~ 469 (471)
+.|++++|+++. .|..+..+++|+.|++.+
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 999999999984 457799999999999875
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-27 Score=234.51 Aligned_cols=223 Identities=25% Similarity=0.334 Sum_probs=167.4
Q ss_pred CCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCC
Q 012082 227 LKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGS 306 (471)
Q Consensus 227 l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~ 306 (471)
...+++|++++|.+..+|..+.++++|++|++++|.+..+|..++++++|++|++++|.++.+|..+.++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCC-CcCccccCC---------CCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecC
Q 012082 307 NEF-THLPDTIGC---------LTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYN 376 (471)
Q Consensus 307 ~~l-~~l~~~l~~---------l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 376 (471)
|++ ..+|..++. +++|++|++++|.+..+|..++++++|+.|++++|.+..+|..++.+++|+.|++++|
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 643 466665543 7777777777777777777777777777777777777777777777777777777776
Q ss_pred CCCC-CchhccCCCCCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC
Q 012082 377 RIKG-LPTTIGNLTKLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 377 ~l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~ 450 (471)
.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|. ....+|.+++.+++|+.+++..+.+.
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCCHHHHH
Confidence 6555 6667777777777777776544 556666777777777777764 34667777777777777777665444
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.3e-27 Score=232.30 Aligned_cols=220 Identities=27% Similarity=0.357 Sum_probs=201.7
Q ss_pred CCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEee
Q 012082 249 GIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVE 328 (471)
Q Consensus 249 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~ 328 (471)
...++++|++++|.+..+|..++++++|++|++++|.++.+|..+.++++|++|++++|.++.+|..++.+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcccccCC---------CCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeC
Q 012082 329 TNE-LEDLPYTIGN---------CSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSF 398 (471)
Q Consensus 329 ~~~-l~~l~~~l~~---------l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~ 398 (471)
+|. +..+|..+.. +++|+.|++++|.++.+|..++.+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 965 4466766554 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC-cCchhhhcCCCCcEEEccC
Q 012082 399 NELE-SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR-ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 399 n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~l~~ 469 (471)
|.+. .+|..+..+++|++|++++|. ....+|.+++.+++|++|+|++|++. .+|.+++.+++|+.+.+..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8776 667788999999999999974 35788999999999999999997765 8999999999999998753
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=6.7e-27 Score=235.51 Aligned_cols=258 Identities=24% Similarity=0.291 Sum_probs=168.7
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcchh-hcCCCCCcE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLID 278 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 278 (471)
..+++.|+++++....+. +..+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. ++++++|++
T Consensus 68 l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEID--TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcEEECCCCcccccC--hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 456677777766443321 235666777777777777776653 4466777777777777777766654 466777777
Q ss_pred EEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCC-------------------CCCcccc
Q 012082 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNE-------------------LEDLPYT 338 (471)
Q Consensus 279 L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~-------------------l~~l~~~ 338 (471)
|++++|.+..++ ..+..+++|++|++++|.++.++ ++.+++|+.|++++|. +..++.
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEEC-
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccc-
Confidence 777777776553 34667777777777777666543 2334444444443333 332322
Q ss_pred cCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEE
Q 012082 339 IGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKL 417 (471)
Q Consensus 339 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L 417 (471)
...++|+.|++++|.++..+ .+..+++|+.|++++|.+.++ |..+..+++|+.|++++|.++.++.....+++|+.|
T Consensus 223 -~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 223 -PVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300 (390)
T ss_dssp -CCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEE
T ss_pred -cccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEE
Confidence 12346666677776666553 466777777777777777774 567777777777777777777776666667777777
Q ss_pred EccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 418 NVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 418 ~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++++| .+..+|..++.+++|++|++++|+++.++ +..+++|+.|++.+
T Consensus 301 ~L~~n--~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 301 DLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 348 (390)
T ss_dssp ECCSS--CCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred ECCCC--cceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCC
Confidence 77777 45577777777777888888777777665 66777777777754
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=9.1e-28 Score=257.01 Aligned_cols=266 Identities=20% Similarity=0.301 Sum_probs=179.7
Q ss_pred cCCCcEEEEecCCCCCcc----cc-----------cchhcC--CCCCccEEEeeCCCCC-CCchhhcCCCCccEEEeecC
Q 012082 200 AKTGAVVLDLRGKLTDQI----EW-----------LPVSIG--KLKDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSN 261 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~----~~-----------l~~~~~--~l~~L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~ 261 (471)
...+++.|+++++..... .| +|..++ ++++|++|++++|.+. .+|..++++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 456777777777654431 12 666666 7777788888777654 46777777777777777777
Q ss_pred C-CCC--cchhhcCC------CCCcEEEeeCCCCCCcch--hhhCCCCCcEEecCCCCCC-cCccccCCCCCCCEEEeeC
Q 012082 262 Q-LIN--LPDSFGDL------INLIDLDLHANRLKTLPA--TFGNLINLMNLDLGSNEFT-HLPDTIGCLTSLKTLNVET 329 (471)
Q Consensus 262 ~-i~~--lp~~i~~l------~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~ 329 (471)
. ++. +|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.++ .+| .++.+++|++|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 6 663 66666665 777777777777777776 6777777777777777666 555 555555555555555
Q ss_pred CCCCCcccccCCCCC-CcEEEccCCCCCcchh--------------------------hhC-------CCCCCcEEEeec
Q 012082 330 NELEDLPYTIGNCSS-LTELRLDFNQLRALPE--------------------------AIG-------KLECLEILTLHY 375 (471)
Q Consensus 330 ~~l~~l~~~l~~l~~-L~~L~l~~~~l~~l~~--------------------------~l~-------~l~~L~~L~l~~ 375 (471)
|.+..+|..+..+++ |+.|++++|.++.+|. .+. .+++|+.|++++
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred CccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 554444444444444 5555555544444443 333 445666677777
Q ss_pred CCCCCCchh-ccCCCCCcEEEeeCCCCCcchhhhcCCC--------CCcEEEccCCcCCCCccchhcc--CCCCccEEEe
Q 012082 376 NRIKGLPTT-IGNLTKLKELDVSFNELESITENLCFAV--------SLKKLNVGNNFADLRALPRSIG--NLEMLEQLDI 444 (471)
Q Consensus 376 ~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~l~~~~--------~L~~L~L~~n~~~l~~lp~~l~--~l~~L~~L~L 444 (471)
|.++.+|.. +..+++|+.|++++|.++.++....... +|+.|++++| .+..+|..+. .+++|+.|+|
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~~~l~~L~~L~L 520 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDDFRATTLPYLVGIDL 520 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS--CCCBCCGGGSTTTCTTCCEEEC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC--cCCccChhhhhccCCCcCEEEC
Confidence 766666644 3457777888888777776665433222 7888888888 4557888876 8899999999
Q ss_pred ecCCCCcCchhhhcCCCCcEEEcc
Q 012082 445 SDDQIRILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 445 ~~n~l~~lp~~l~~L~~L~~L~l~ 468 (471)
++|+++.+|..+..+++|+.|++.
T Consensus 521 s~N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 521 SYNSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CSSCCSSCCCGGGGCSSCCEEECC
T ss_pred CCCCCCCcChhhhcCCCCCEEECC
Confidence 999998888888899999999884
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8.6e-28 Score=257.21 Aligned_cols=266 Identities=18% Similarity=0.278 Sum_probs=185.4
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCC-CCC--CchhhcCC------CCccEEEeecCCCCCcch--
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENR-IMA--LPSSIAGI------KTLKKLDIHSNQLINLPD-- 268 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~-~~~--l~~~i~~l------~~L~~L~L~~~~i~~lp~-- 268 (471)
...+++.|+++++.... .+|..++++++|++|++++|. +.. +|..++.+ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 34566666666654322 345556666666666666665 553 55555443 556666666665555555
Q ss_pred hhcCCCCCcEEEeeCCCCC-Cc----------------------chhhhCCCC-CcEEecCCCCCCcCccccCCCC--CC
Q 012082 269 SFGDLINLIDLDLHANRLK-TL----------------------PATFGNLIN-LMNLDLGSNEFTHLPDTIGCLT--SL 322 (471)
Q Consensus 269 ~i~~l~~L~~L~L~~~~l~-~l----------------------p~~l~~l~~-L~~L~l~~~~l~~l~~~l~~l~--~L 322 (471)
.++++++|++|++++|.+. .+ |..+..+++ |++|++++|.++.+|..++.+. +|
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 404 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM 404 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence 5555555666655555555 44 444555555 5555555555555555444433 55
Q ss_pred CEEEeeCCCCCC-cccccC-------CCCCCcEEEccCCCCCcchhhh-CCCCCCcEEEeecCCCCCCchhccC------
Q 012082 323 KTLNVETNELED-LPYTIG-------NCSSLTELRLDFNQLRALPEAI-GKLECLEILTLHYNRIKGLPTTIGN------ 387 (471)
Q Consensus 323 ~~L~l~~~~l~~-l~~~l~-------~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~l~~~~l~~l~~~l~~------ 387 (471)
++|++++|.+.. .|..+. .+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.+|.....
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~ 484 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence 566666555543 234444 5668889999999998888765 4689999999999999988754432
Q ss_pred --CCCCcEEEeeCCCCCcchhhhc--CCCCCcEEEccCCcCCCCccchhccCCCCccEEEeec------CCCC-cCchhh
Q 012082 388 --LTKLKELDVSFNELESITENLC--FAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISD------DQIR-ILPDSF 456 (471)
Q Consensus 388 --l~~L~~L~L~~n~l~~l~~~l~--~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~------n~l~-~lp~~l 456 (471)
+++|+.|+|++|.++.+|..+. .+++|+.|+|++| .+..+|.+++.+++|+.|+|++ |++. .+|..+
T Consensus 485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC--CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 3399999999999999998887 8999999999999 5567999999999999999954 5555 889999
Q ss_pred hcCCCCcEEEccC
Q 012082 457 RLLSKLRVFRAMR 469 (471)
Q Consensus 457 ~~L~~L~~L~l~~ 469 (471)
..+++|+.|++.+
T Consensus 563 ~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 563 TLCPSLTQLQIGS 575 (636)
T ss_dssp GGCSSCCEEECCS
T ss_pred hcCCCCCEEECCC
Confidence 9999999999875
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=7e-27 Score=255.89 Aligned_cols=238 Identities=23% Similarity=0.382 Sum_probs=133.2
Q ss_pred CccEEEeeCCCCCCCch--hhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCC-CcEEecC
Q 012082 229 DVTELNLSENRIMALPS--SIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLIN-LMNLDLG 305 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~--~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~l~ 305 (471)
+|++|++++|.+..+|. .+.++++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+.++++ |++|+++
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc
Confidence 45555555555444444 4455555555555555444444 444455555555555544444444444444 5555555
Q ss_pred CCCCCcCccccCCC-------------------------------CCCCEEEeeCCCCCCcccccC-CCCCCcEEEccCC
Q 012082 306 SNEFTHLPDTIGCL-------------------------------TSLKTLNVETNELEDLPYTIG-NCSSLTELRLDFN 353 (471)
Q Consensus 306 ~~~l~~l~~~l~~l-------------------------------~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~ 353 (471)
+|.++.+|..+..+ .+|+.|++++|.+..+|..+. .+++|+.|++++|
T Consensus 628 ~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred CCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 55444444433333 355555555555555554443 5566666666666
Q ss_pred CCCcchhhhCCC--------CCCcEEEeecCCCCCCchhcc--CCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCc
Q 012082 354 QLRALPEAIGKL--------ECLEILTLHYNRIKGLPTTIG--NLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 354 ~l~~l~~~l~~l--------~~L~~L~l~~~~l~~l~~~l~--~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~ 423 (471)
.+..+|..+... ++|+.|++++|+++.+|..+. .+++|+.|+|++|.+..+|..+..+++|+.|+|++|.
T Consensus 708 ~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred cCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 666665544322 266666666666666666665 6666666666666666666666666666666665521
Q ss_pred -----CCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 424 -----ADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 424 -----~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
.-...+|.+++.+++|+.|+|++|++..+|..+. ++|+.|++.+
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCS
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCC
Confidence 1134556666666666666666666666665543 4666666653
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=8.6e-28 Score=234.92 Aligned_cols=236 Identities=24% Similarity=0.401 Sum_probs=117.5
Q ss_pred CccEEEeeCCCCC---CCchhhcCCCCccEEEeec-CCCC-CcchhhcCCCCCcEEEeeCCCCC-CcchhhhCCCCCcEE
Q 012082 229 DVTELNLSENRIM---ALPSSIAGIKTLKKLDIHS-NQLI-NLPDSFGDLINLIDLDLHANRLK-TLPATFGNLINLMNL 302 (471)
Q Consensus 229 ~L~~L~L~~~~~~---~l~~~i~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L 302 (471)
++++|+++++.+. .+|..+.++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555544 2444555555555555552 4433 34445555555555555555554 444455555555555
Q ss_pred ecCCCCCC-cCccccCCCCCCCEEEeeCCCCC-CcccccCCCC-CCcEEEccCCCCC-cchhhhCCCCCCcEEEeecCCC
Q 012082 303 DLGSNEFT-HLPDTIGCLTSLKTLNVETNELE-DLPYTIGNCS-SLTELRLDFNQLR-ALPEAIGKLECLEILTLHYNRI 378 (471)
Q Consensus 303 ~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~-~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l 378 (471)
++++|.++ .+|..++.+++|++|++++|.+. .+|..++.++ +|+.|++++|.+. .+|..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 55555544 44445555555555555555544 3444455554 5555555555543 3444444443 55555555554
Q ss_pred CC-CchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC-cCchhh
Q 012082 379 KG-LPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR-ILPDSF 456 (471)
Q Consensus 379 ~~-l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l 456 (471)
+. .|..+..+++|+.|++++|.++..+..+..+++|++|++++|... ..+|.++..+++|++|+|++|+++ .+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 43 344455555555555555555544333444555555555555211 134555555555555555555555 33332
Q ss_pred hcCCCCcEEEc
Q 012082 457 RLLSKLRVFRA 467 (471)
Q Consensus 457 ~~L~~L~~L~l 467 (471)
..+++|+.|++
T Consensus 288 ~~l~~L~~l~l 298 (313)
T 1ogq_A 288 GNLQRFDVSAY 298 (313)
T ss_dssp TTGGGSCGGGT
T ss_pred ccccccChHHh
Confidence 44555554444
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.6e-26 Score=237.28 Aligned_cols=125 Identities=29% Similarity=0.345 Sum_probs=101.0
Q ss_pred CCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEc
Q 012082 343 SSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNV 419 (471)
Q Consensus 343 ~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L 419 (471)
++|+.|++++|.+..+ +..++.+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+ +..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 4566666666666543 55678889999999999998885 56888899999999999998876 566788899999999
Q ss_pred cCCcCCCCcc-chhccCCCCccEEEeecCCCCcCch-hhhcCCCCcEEEccC
Q 012082 420 GNNFADLRAL-PRSIGNLEMLEQLDISDDQIRILPD-SFRLLSKLRVFRAMR 469 (471)
Q Consensus 420 ~~n~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~l~~ 469 (471)
++| .+..+ |.+++.+++|++|+|++|+++.+|. .+..+++|+.|++.+
T Consensus 355 s~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 355 SYN--HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp CSS--CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCC--cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccC
Confidence 998 44555 6788899999999999999998775 568999999998865
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.5e-27 Score=247.82 Aligned_cols=258 Identities=24% Similarity=0.297 Sum_probs=166.9
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCcchh-hcCCCCCcE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLPDS-FGDLINLID 278 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~ 278 (471)
...++.|+++++....+ .+..+..+++|++|++++|.+..++. .++++++|++|+|++|.++.+|.. |+++++|++
T Consensus 74 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp CCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEECCCCCCCCC--ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 45677777776644332 13356677777777777777776543 457777777777777777776654 467777777
Q ss_pred EEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCC-------------------cccc
Q 012082 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELED-------------------LPYT 338 (471)
Q Consensus 279 L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~-------------------l~~~ 338 (471)
|++++|.+..++ ..+.++++|++|++++|.++.++ ++.+++|+.|++++|.+.. ++..
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 777777776553 35677777777777777766553 3344455555444444332 2211
Q ss_pred cCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEE
Q 012082 339 IGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKL 417 (471)
Q Consensus 339 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L 417 (471)
+ .++|+.|++++|.++.. ..++.+++|+.|++++|.+.++ |..+..+++|+.|+|++|.++.++.....+++|+.|
T Consensus 230 ~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L 306 (597)
T 3oja_B 230 V--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306 (597)
T ss_dssp C--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEE
T ss_pred c--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEE
Confidence 1 23566666666666554 3466677777777777777763 566777777777777777777766666667777777
Q ss_pred EccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 418 NVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 418 ~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
+|++| .+..+|.+++.+++|+.|+|++|+++.+| +..+++|+.|++.+
T Consensus 307 ~Ls~N--~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 307 DLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp ECCSS--CCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred ECCCC--CCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 77777 44567777777777777777777777665 56677777777654
No 13
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.9e-26 Score=224.62 Aligned_cols=260 Identities=22% Similarity=0.377 Sum_probs=215.4
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
..++.|+++++....+. +..+..+++|++|++++|.+..+ |..+.++++|++|++++|.++.+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 57888999887655432 34678899999999999998876 7788999999999999999998887654 7899999
Q ss_pred eeCCCCCCcch-hhhCCCCCcEEecCCCCCC---cCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCC
Q 012082 281 LHANRLKTLPA-TFGNLINLMNLDLGSNEFT---HLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 281 L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+++|.+..++. .+.++++|++|++++|.+. ..+..+..+++|++|++++|.+..+|..+. ++|+.|++++|.++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 99999987754 5889999999999999886 346678889999999999999998887654 78999999999998
Q ss_pred cc-hhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchh-c
Q 012082 357 AL-PEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRS-I 433 (471)
Q Consensus 357 ~l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~-l 433 (471)
.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..+|..+..+++|++|++++| .+..++.. +
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN--NISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS--CCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC--cCCccChhhc
Confidence 76 567889999999999999998855 4788899999999999999999988899999999999998 45555532 2
Q ss_pred c------CCCCccEEEeecCCCC---cCchhhhcCCCCcEEEccC
Q 012082 434 G------NLEMLEQLDISDDQIR---ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 434 ~------~l~~L~~L~L~~n~l~---~lp~~l~~L~~L~~L~l~~ 469 (471)
. ..++|+.|++++|.+. ..|..+..+++|+.+++.+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 2 2478899999999886 3457889999999998864
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=7.2e-26 Score=222.72 Aligned_cols=256 Identities=21% Similarity=0.356 Sum_probs=216.5
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEE
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLD 280 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~ 280 (471)
+++.+++++.... .+|..+ .+.+++|++++|.+..++. .+.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 32 ~l~~l~~~~~~l~---~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE---KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC---SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCcc---ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 4567777765443 344433 3689999999999998765 689999999999999999987 78899999999999
Q ss_pred eeCCCCCCcchhhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCCCCCC---cccccCCCCCCcEEEccCCCCC
Q 012082 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELED---LPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 281 L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~---l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+++|.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+.. .+..+..+++|+.|++++|.++
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99999999887664 799999999999997754 57899999999999998863 4567888999999999999999
Q ss_pred cchhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhcc
Q 012082 357 ALPEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIG 434 (471)
Q Consensus 357 ~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 434 (471)
.+|..+. ++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|++|++++| .+..+|.++.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--KLVKVPGGLA 260 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--CCSSCCTTTT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC--cCccCChhhc
Confidence 8887654 8999999999999985 6789999999999999999997764 6788999999999999 5679999999
Q ss_pred CCCCccEEEeecCCCCcCch-hhh------cCCCCcEEEccC
Q 012082 435 NLEMLEQLDISDDQIRILPD-SFR------LLSKLRVFRAMR 469 (471)
Q Consensus 435 ~l~~L~~L~L~~n~l~~lp~-~l~------~L~~L~~L~l~~ 469 (471)
.+++|++|++++|+++.++. .|. ..+.|+.|++.+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 99999999999999997764 333 247788887754
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.9e-26 Score=234.16 Aligned_cols=265 Identities=22% Similarity=0.346 Sum_probs=174.6
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCc-chhhcCCCCCcE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINL-PDSFGDLINLID 278 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~ 278 (471)
..+++.|+++++....+ .|..+..+++|++|++++|.+..+|. .+.++++|++|++++|.+..+ +..+.++++|++
T Consensus 55 l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 55 FPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp CTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 34556666655533322 13445556666666666666655543 245566666666666665544 344556666666
Q ss_pred EEeeCCCCCCc-chhhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCC
Q 012082 279 LDLHANRLKTL-PATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQL 355 (471)
Q Consensus 279 L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l 355 (471)
|++++|.+..+ |..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..++ ..+..+++|+.|++++|..
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 66666665544 3345666666666666666665543 3556666666666666655443 3455666666666666543
Q ss_pred -CcchhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCcc-ch
Q 012082 356 -RALPEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRAL-PR 431 (471)
Q Consensus 356 -~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~l-p~ 431 (471)
..++..+....+|+.|++++|.++.+| ..+..+++|+.|+|++|.+..++. .+..+++|+.|+|++| .+..+ |.
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~ 290 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG--QLAVVEPY 290 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS--CCSEECTT
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC--ccceECHH
Confidence 345554555557888888888888877 567888999999999998886654 4677889999999888 34444 66
Q ss_pred hccCCCCccEEEeecCCCCcCch-hhhcCCCCcEEEccC
Q 012082 432 SIGNLEMLEQLDISDDQIRILPD-SFRLLSKLRVFRAMR 469 (471)
Q Consensus 432 ~l~~l~~L~~L~L~~n~l~~lp~-~l~~L~~L~~L~l~~ 469 (471)
.+..+++|+.|+|++|+++.++. .|..+++|+.|++.+
T Consensus 291 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred HhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 78889999999999999997774 578899999998865
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=7.7e-26 Score=233.79 Aligned_cols=264 Identities=25% Similarity=0.383 Sum_probs=228.7
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 279 (471)
..++.|+++++....+. +..+..+++|++|++++|.+..+ |..|.++++|++|+|++|.++.+|. .|+++++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceEC--HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 57889999998665432 56788999999999999999876 6789999999999999999998875 47899999999
Q ss_pred EeeCCCCCCc-chhhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCCC
Q 012082 280 DLHANRLKTL-PATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 280 ~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~ 356 (471)
++++|.+..+ |..+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+.++++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999999866 56799999999999999999866 5678899999999999999998864 5889999999999999998
Q ss_pred cchh-hhCCCCCCcEEEeecCCCCC-CchhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCcEEEccCCcCCCCccc-hh
Q 012082 357 ALPE-AIGKLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRALP-RS 432 (471)
Q Consensus 357 ~l~~-~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~lp-~~ 432 (471)
.++. .+..+++|+.|++++|.... ++.......+|+.|++++|.++.++ ..+..+++|+.|+|++| .+..++ ..
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~ 267 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN--PISTIEGSM 267 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS--CCCEECTTS
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC--cCCccChhh
Confidence 7755 67899999999999987555 6666666779999999999999887 46788999999999999 445554 45
Q ss_pred ccCCCCccEEEeecCCCCcC-chhhhcCCCCcEEEccC
Q 012082 433 IGNLEMLEQLDISDDQIRIL-PDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 433 l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~l~~ 469 (471)
+..+++|+.|+|++|+++.+ |..|..+++|+.|++.+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 88999999999999999965 67899999999999875
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.4e-25 Score=229.52 Aligned_cols=254 Identities=24% Similarity=0.397 Sum_probs=128.6
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch------------
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD------------ 268 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~------------ 268 (471)
..+++.|+++++..... +. +..+++|++|++++|.+..++. +.++++|++|++++|.+..++.
T Consensus 89 l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADI---TP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccC---hh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 34455555554433222 22 4455555555555555555443 5555555555555555444332
Q ss_pred --------hhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccC
Q 012082 269 --------SFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIG 340 (471)
Q Consensus 269 --------~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~ 340 (471)
.++++++|++|++++|.+..++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.+..++ .+.
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~ 240 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLA 240 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhh
Confidence 1222333333333333333332 23334444444444444433322 334444444444444444432 344
Q ss_pred CCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEcc
Q 012082 341 NCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVG 420 (471)
Q Consensus 341 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~ 420 (471)
.+++|+.|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|+.|+++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLY 317 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECC
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECc
Confidence 45555555555555554443 4555566666666665555544 5556666666666666655544 4556666666666
Q ss_pred CCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 421 NNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 421 ~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
+| .+..++. ++.+++|+.|++++|+++.++ .+..+++|+.|++.+
T Consensus 318 ~n--~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 318 FN--NISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGH 362 (466)
T ss_dssp SS--CCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred CC--cCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCC
Confidence 66 3334432 556666666666666666653 466667777666653
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=9.4e-26 Score=235.63 Aligned_cols=262 Identities=21% Similarity=0.311 Sum_probs=167.3
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCC--cchhhcCCCCCc
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLI 277 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~ 277 (471)
...+++.|+++++....+ .|..+..+++|++|++++|.+..+|.. .+++|++|++++|.+.. +|..++++++|+
T Consensus 43 ~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYL--DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp TCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccccccEEecCCCccCCc--ChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcce
Confidence 456788888887755432 256677888888888888888877765 77888888888888775 467788888888
Q ss_pred EEEeeCCCCCCc--------------------------chhhhCC-----------------------------------
Q 012082 278 DLDLHANRLKTL--------------------------PATFGNL----------------------------------- 296 (471)
Q Consensus 278 ~L~L~~~~l~~l--------------------------p~~l~~l----------------------------------- 296 (471)
+|++++|.+... |..+..+
T Consensus 119 ~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 198 (520)
T 2z7x_B 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198 (520)
T ss_dssp EEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEE
T ss_pred EEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccc
Confidence 888887766420 1111111
Q ss_pred ------------------------------------------------CCCcEEecCCCCCC-cCcccc-----------
Q 012082 297 ------------------------------------------------INLMNLDLGSNEFT-HLPDTI----------- 316 (471)
Q Consensus 297 ------------------------------------------------~~L~~L~l~~~~l~-~l~~~l----------- 316 (471)
++|++|++++|.++ .+|..+
T Consensus 199 ~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L 278 (520)
T 2z7x_B 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278 (520)
T ss_dssp ECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEE
T ss_pred ccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCcee
Confidence 13333444333333 333332
Q ss_pred ------------------------------------------CCCCCCCEEEeeCCCCCC-cccccCCCCCCcEEEccCC
Q 012082 317 ------------------------------------------GCLTSLKTLNVETNELED-LPYTIGNCSSLTELRLDFN 353 (471)
Q Consensus 317 ------------------------------------------~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l~~~ 353 (471)
..+++|++|++++|.+.. +|..+..+++|+.|++++|
T Consensus 279 ~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 358 (520)
T 2z7x_B 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358 (520)
T ss_dssp EEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS
T ss_pred EeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC
Confidence 344455555555555553 3445555666666666666
Q ss_pred CCCc---chhhhCCCCCCcEEEeecCCCCC-Cchh-ccCCCCCcEEEeeCCCCCc-chhhhcCCCCCcEEEccCCcCCCC
Q 012082 354 QLRA---LPEAIGKLECLEILTLHYNRIKG-LPTT-IGNLTKLKELDVSFNELES-ITENLCFAVSLKKLNVGNNFADLR 427 (471)
Q Consensus 354 ~l~~---l~~~l~~l~~L~~L~l~~~~l~~-l~~~-l~~l~~L~~L~L~~n~l~~-l~~~l~~~~~L~~L~L~~n~~~l~ 427 (471)
.++. +|..++.+++|+.|++++|.+.. +|.. +..+++|+.|++++|.++. ++..+ .++|+.|++++| .+.
T Consensus 359 ~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N--~l~ 434 (520)
T 2z7x_B 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN--KIK 434 (520)
T ss_dssp CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC--CTTCCEEECCSS--CCC
T ss_pred ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh--cccCCEEECCCC--ccc
Confidence 6653 23445566666666666666655 5532 4555666666666666542 22222 267888888777 456
Q ss_pred ccchhccCCCCccEEEeecCCCCcCchh-hhcCCCCcEEEccC
Q 012082 428 ALPRSIGNLEMLEQLDISDDQIRILPDS-FRLLSKLRVFRAMR 469 (471)
Q Consensus 428 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~l~~ 469 (471)
.+|.++..+++|++|++++|+++.+|.. +..+++|+.|++.+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 8888888888899999988888888875 88888888888765
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=4e-26 Score=224.84 Aligned_cols=259 Identities=22% Similarity=0.386 Sum_probs=216.9
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
..++.|+++++....+ .+..+..+++|++|++++|.+..+ |..+.++++|++|++++|.++.+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCcc--CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 5788899988765433 245688899999999999999876 6788999999999999999998887765 8999999
Q ss_pred eeCCCCCCcch-hhhCCCCCcEEecCCCCCC---cCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCC
Q 012082 281 LHANRLKTLPA-TFGNLINLMNLDLGSNEFT---HLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 281 L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+++|.+..+|. .+.++++|++|++++|.++ ..+..+..+ +|++|++++|.+..+|..+. ++|+.|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 99999998865 4889999999999999886 345666667 89999999999998887655 78999999999998
Q ss_pred cch-hhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccch-hc
Q 012082 357 ALP-EAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPR-SI 433 (471)
Q Consensus 357 ~l~-~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~-~l 433 (471)
.++ ..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.+|..+..+++|+.|++++| .+..++. .+
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N--~l~~~~~~~~ 284 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTN--NITKVGVNDF 284 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSS--CCCBCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCC--CCCccChhHc
Confidence 776 57889999999999999999965 4789999999999999999999999999999999999999 4555543 23
Q ss_pred cC------CCCccEEEeecCCCC---cCchhhhcCCCCcEEEccC
Q 012082 434 GN------LEMLEQLDISDDQIR---ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 434 ~~------l~~L~~L~L~~n~l~---~lp~~l~~L~~L~~L~l~~ 469 (471)
.. .++|+.|++++|.+. ..|..+..+++|+.+++.+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 22 467999999999887 4557799999999998865
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=2.2e-25 Score=229.89 Aligned_cols=255 Identities=26% Similarity=0.409 Sum_probs=197.6
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.|+++++....+ +. +..+++|++|++++|.+..++. +.++++|++|++++|.++.++. ++.+++|++|
T Consensus 66 ~l~~L~~L~Ls~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDI---TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhcCCCEEECCCCccCCc---hh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 467889999998865543 34 7888999999999999888876 8899999999999999988865 8899999999
Q ss_pred EeeCCCCCCcch--------------------hhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCccccc
Q 012082 280 DLHANRLKTLPA--------------------TFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTI 339 (471)
Q Consensus 280 ~L~~~~l~~lp~--------------------~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l 339 (471)
++++|.+..++. .+.++++|++|++++|.+..++ .+..+++|++|++++|.+..++. +
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~ 217 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-L 217 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-c
Confidence 999988776542 2455666777777777666654 36667777777777777766654 6
Q ss_pred CCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEc
Q 012082 340 GNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNV 419 (471)
Q Consensus 340 ~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L 419 (471)
+.+++|+.|++++|.++.++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 294 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLEL 294 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred cccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEc
Confidence 66777888888887777664 36777888888888888877655 7778888888888888887766 677888888888
Q ss_pred cCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 420 GNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 420 ~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++| .+..++. ++.+++|+.|++++|+++.++. +..+++|+.|++.+
T Consensus 295 ~~n--~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 295 NEN--QLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSS--CCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCS
T ss_pred CCC--cccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCC
Confidence 888 4556654 7788888888888888887766 78888888888764
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=5.4e-27 Score=229.25 Aligned_cols=249 Identities=24% Similarity=0.351 Sum_probs=219.7
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeC-CCCC-CCchhhcCCCCccEEEeecCCCC-CcchhhcCCCCCcE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSE-NRIM-ALPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLID 278 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~-~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~ 278 (471)
.+++.|+++++.......+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+. .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999987664335688899999999999995 7776 58889999999999999999998 78899999999999
Q ss_pred EEeeCCCCC-CcchhhhCCCCCcEEecCCCCCC-cCccccCCCC-CCCEEEeeCCCCC-CcccccCCCCCCcEEEccCCC
Q 012082 279 LDLHANRLK-TLPATFGNLINLMNLDLGSNEFT-HLPDTIGCLT-SLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQ 354 (471)
Q Consensus 279 L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~-~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~ 354 (471)
|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+. +|++|++++|.+. .+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998 78999999999999999999998 8899999998 9999999999987 5677888887 9999999999
Q ss_pred CC-cchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCCCCccchh
Q 012082 355 LR-ALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFADLRALPRS 432 (471)
Q Consensus 355 l~-~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~ 432 (471)
++ ..+..+..+++|+.|++++|.++..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|... ..+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc-ccCCCC
Confidence 86 5667789999999999999999986666889999999999999998 78888999999999999999432 356665
Q ss_pred ccCCCCccEEEeecCC-CCcCc
Q 012082 433 IGNLEMLEQLDISDDQ-IRILP 453 (471)
Q Consensus 433 l~~l~~L~~L~L~~n~-l~~lp 453 (471)
+.+++|+.|++++|. +...|
T Consensus 288 -~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEESTT
T ss_pred -ccccccChHHhcCCCCccCCC
Confidence 889999999999987 44433
No 22
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=3.8e-26 Score=249.76 Aligned_cols=242 Identities=28% Similarity=0.438 Sum_probs=199.7
Q ss_pred CCCccEEEeeCCCCC-CCchhhcCCCCccEEEeecCCCC-CcchhhcCCCCCcEEEeeCCCCC-CcchhhhCCCCCcEEe
Q 012082 227 LKDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSNQLI-NLPDSFGDLINLIDLDLHANRLK-TLPATFGNLINLMNLD 303 (471)
Q Consensus 227 l~~L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~ 303 (471)
++.|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 556777777777766 46777888888888888888777 56788888888888888888887 6788888888888888
Q ss_pred cCCCCCC-cCccccCCCCCCCEEEeeCCCCC-CcccccCCCCCCcEEEccCCCCC-cchhhhCCCCCCcEEEeecCCCCC
Q 012082 304 LGSNEFT-HLPDTIGCLTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQLR-ALPEAIGKLECLEILTLHYNRIKG 380 (471)
Q Consensus 304 l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~~ 380 (471)
+++|.++ .+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.+++
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 8888887 66888888888888888888887 56778888888888888888886 677888888888888888887653
Q ss_pred -Cch----------------------------------------------------------------------hccCCC
Q 012082 381 -LPT----------------------------------------------------------------------TIGNLT 389 (471)
Q Consensus 381 -l~~----------------------------------------------------------------------~l~~l~ 389 (471)
+|. .+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 333 233457
Q ss_pred CCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC-cCchhhhcCCCCcEEEc
Q 012082 390 KLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR-ILPDSFRLLSKLRVFRA 467 (471)
Q Consensus 390 ~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~L~~L~l 467 (471)
+|+.|++++|.++ .+|..++.+++|+.|+|++|... ..+|..++.+++|+.|+|++|+++ .+|..+..++.|+.|++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 7889999999988 67888999999999999998432 478999999999999999999998 88899999999999988
Q ss_pred cC
Q 012082 468 MR 469 (471)
Q Consensus 468 ~~ 469 (471)
.+
T Consensus 712 s~ 713 (768)
T 3rgz_A 712 SN 713 (768)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=4.6e-26 Score=224.39 Aligned_cols=255 Identities=23% Similarity=0.363 Sum_probs=217.6
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEE
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLD 280 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~ 280 (471)
.++.++++++... .+|..+ .++|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 34 ~l~~l~~~~~~l~---~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS---SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc---ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 4677787776443 445444 368999999999999874 5799999999999999999977 77899999999999
Q ss_pred eeCCCCCCcchhhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCCCCCC---cccccCCCCCCcEEEccCCCCC
Q 012082 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETNELED---LPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 281 L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~---l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+++|.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.+.. .+..+..+ +|+.|++++|.++
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99999999988765 899999999999998875 47899999999999999863 35556666 9999999999999
Q ss_pred cchhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhcc
Q 012082 357 ALPEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIG 434 (471)
Q Consensus 357 ~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 434 (471)
.+|..+. ++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++| .+..+|.+++
T Consensus 186 ~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N--~l~~lp~~l~ 261 (332)
T 2ft3_A 186 GIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN--KLSRVPAGLP 261 (332)
T ss_dssp SCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS--CCCBCCTTGG
T ss_pred ccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC--cCeecChhhh
Confidence 9887654 79999999999999965 788999999999999999997764 6888999999999999 5679999999
Q ss_pred CCCCccEEEeecCCCCcCch-hhhc------CCCCcEEEccC
Q 012082 435 NLEMLEQLDISDDQIRILPD-SFRL------LSKLRVFRAMR 469 (471)
Q Consensus 435 ~l~~L~~L~L~~n~l~~lp~-~l~~------L~~L~~L~l~~ 469 (471)
.+++|+.|++++|+++.++. .+.. .+.|+.|++.+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 99999999999999997763 3443 46788888764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=3.2e-25 Score=233.94 Aligned_cols=147 Identities=23% Similarity=0.331 Sum_probs=89.3
Q ss_pred CCCCCEEEeeCCCCCC-cccccCCCCCCcEEEccCCCCCcch---hhhCCCCCCcEEEeecCCCCC-Cch-hccCCCCCc
Q 012082 319 LTSLKTLNVETNELED-LPYTIGNCSSLTELRLDFNQLRALP---EAIGKLECLEILTLHYNRIKG-LPT-TIGNLTKLK 392 (471)
Q Consensus 319 l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~l~~~~l~~-l~~-~l~~l~~L~ 392 (471)
+++|++|++++|.+.. +|..+.++++|+.|++++|.++.++ ..++.+++|+.|++++|.++. +|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 3444444444444443 3444445555555555555554332 234455555555555555554 442 244455555
Q ss_pred EEEeeCCCCCc-chhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchh-hhcCCCCcEEEccC
Q 012082 393 ELDVSFNELES-ITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDS-FRLLSKLRVFRAMR 469 (471)
Q Consensus 393 ~L~L~~n~l~~-l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~l~~ 469 (471)
.|++++|.++. .+..+ .++|+.|++++| .+..+|.++..+++|++|++++|+++.+|.. +..+++|+.|++.+
T Consensus 432 ~L~l~~n~l~~~~~~~l--~~~L~~L~L~~N--~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCL--PPKVKVLDLHNN--RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp EEECCSSCCCGGGGSSC--CTTCSEEECCSS--CCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCS
T ss_pred EEECCCCCCCcchhhhh--cCcCCEEECCCC--cCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecC
Confidence 55555555542 12211 157888888887 5668888888888999999999999988876 88889998888765
No 25
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2e-25 Score=224.78 Aligned_cols=260 Identities=26% Similarity=0.334 Sum_probs=219.3
Q ss_pred cCCCcEEEEecCCCCCcccccch-hcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCC
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPV-SIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINL 276 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L 276 (471)
...+++.+++.++.... +|. .+..+++|++|++++|.+..++ ..+.++++|++|++++|.+..++ ..++++++|
T Consensus 43 ~l~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 46788999999975543 444 4678999999999999999875 47899999999999999999875 568999999
Q ss_pred cEEEeeCCCCCCcchh-hhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCCcccccCCCCCC---------
Q 012082 277 IDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYTIGNCSSL--------- 345 (471)
Q Consensus 277 ~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L--------- 345 (471)
++|++++|.++.+|.. +.++++|++|++++|.++.++ ..++.+++|++|++++|.+..++ +..+++|
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 197 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccc
Confidence 9999999999999876 589999999999999999774 56899999999999999988664 3344444
Q ss_pred ----------cEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCC
Q 012082 346 ----------TELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI-TENLCFAVSL 414 (471)
Q Consensus 346 ----------~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L 414 (471)
+.|++++|.+..++. ...++|+.|++++|.+++. ..+..+++|+.|++++|.+..+ +..+..+++|
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 455555555554443 2346899999999998886 5788999999999999999866 6778899999
Q ss_pred cEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 415 KKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 415 ~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++|++++| .+..+|..+..+++|++|++++|+++.+|..+..+++|+.|++.+
T Consensus 275 ~~L~L~~n--~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 275 ERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327 (390)
T ss_dssp CEEECCSS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred CEEECCCC--cCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCC
Confidence 99999999 667888888899999999999999999999999999999999875
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.9e-25 Score=236.22 Aligned_cols=128 Identities=23% Similarity=0.339 Sum_probs=69.8
Q ss_pred cCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCC-cchh-hhcCCCCCc
Q 012082 339 IGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELE-SITE-NLCFAVSLK 415 (471)
Q Consensus 339 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~-~l~~-~l~~~~~L~ 415 (471)
+..+++|+.|++++|.++.+|..++.+++|++|++++|.+..+ |..+..+++|+.|++++|.+. .++. .+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4445555555555555555555555555555555555555553 344555555555555555544 2322 244555666
Q ss_pred EEEccCCcCCCCcc---chhccCCCCccEEEeecCCCCcC-chhhhcCCCCcEEEcc
Q 012082 416 KLNVGNNFADLRAL---PRSIGNLEMLEQLDISDDQIRIL-PDSFRLLSKLRVFRAM 468 (471)
Q Consensus 416 ~L~L~~n~~~l~~l---p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~l~ 468 (471)
+|++++| .+..+ +..++.+++|++|++++|++..+ |..+..+++|+.|++.
T Consensus 354 ~L~l~~n--~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 354 ELDLSHD--DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSS--CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCC--ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 6666555 22233 34455666666666666666533 4556666666666654
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=2.6e-25 Score=236.61 Aligned_cols=261 Identities=22% Similarity=0.199 Sum_probs=222.4
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.+++.++.... ++ .+..+++|++|++++|.+..+| .+ .+++|++|++++|.... +..++.+++|++|
T Consensus 283 ~l~~L~~L~l~~~~~~~---l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~-~~~~~~l~~L~~L 355 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKY---LE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSI-SFKKVALPSLSYL 355 (606)
T ss_dssp GGTTCSEEEEESCCCCC---CC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCE-ECCCCCCTTCCEE
T ss_pred cCCCCCEEEecCccchh---hh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCcc-chhhccCCCCCEE
Confidence 45678888888876544 34 5677889999999999998888 44 88999999999984432 2256789999999
Q ss_pred EeeCCCCCCc---chhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcc--cccCCCCCCcEEEccCCC
Q 012082 280 DLHANRLKTL---PATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP--YTIGNCSSLTELRLDFNQ 354 (471)
Q Consensus 280 ~L~~~~l~~l---p~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~l~~~~ 354 (471)
++++|.++.+ |..+..+++|++|++++|.++.+|..+..+++|++|++++|.+...+ ..+..+++|+.|++++|.
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 9999988855 78899999999999999999999988999999999999999887664 478899999999999999
Q ss_pred CCc-chhhhCCCCCCcEEEeecCCCCC--CchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCcc-
Q 012082 355 LRA-LPEAIGKLECLEILTLHYNRIKG--LPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRAL- 429 (471)
Q Consensus 355 l~~-l~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~l- 429 (471)
+.. .|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|. +..+
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~ 513 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN--LLFLD 513 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CSCEE
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc--CCCcC
Confidence 965 56678899999999999999887 678899999999999999999866 4568889999999999993 4444
Q ss_pred chhccCCCCccEEEeecCCCCcCchhhhcCC-CCcEEEccC
Q 012082 430 PRSIGNLEMLEQLDISDDQIRILPDSFRLLS-KLRVFRAMR 469 (471)
Q Consensus 430 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~-~L~~L~l~~ 469 (471)
|.+++.+++|+.|+|++|+++.+|..+..++ +|+.|++.+
T Consensus 514 ~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp GGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred HHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence 7889999999999999999999998899998 599999865
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.9e-25 Score=235.23 Aligned_cols=110 Identities=30% Similarity=0.398 Sum_probs=65.8
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCc
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLI 277 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~ 277 (471)
...+++.|+++++....+ .+..+.++++|++|++++|.+..+ |..|+++++|++|++++|.+..++ ..++++++|+
T Consensus 54 ~l~~L~~L~Ls~n~l~~i--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 54 NFSELQWLDLSRCEIETI--EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred CCccCcEEeCCCCccccc--CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 345566666666543322 134455666666666666666654 555666666666666666666554 4566666666
Q ss_pred EEEeeCCCCC--CcchhhhCCCCCcEEecCCCCCCc
Q 012082 278 DLDLHANRLK--TLPATFGNLINLMNLDLGSNEFTH 311 (471)
Q Consensus 278 ~L~L~~~~l~--~lp~~l~~l~~L~~L~l~~~~l~~ 311 (471)
+|++++|.+. .+|..++++++|++|++++|.++.
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 6666666665 356666666666666666665553
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9e-26 Score=246.75 Aligned_cols=241 Identities=30% Similarity=0.471 Sum_probs=168.2
Q ss_pred CCccEEEeeCCCCC-CCchhhcCCCCccEEEeecCCCC-Ccchh-hcCCCCCcEEEeeCCCCC-CcchhhhCCC-CCcEE
Q 012082 228 KDVTELNLSENRIM-ALPSSIAGIKTLKKLDIHSNQLI-NLPDS-FGDLINLIDLDLHANRLK-TLPATFGNLI-NLMNL 302 (471)
Q Consensus 228 ~~L~~L~L~~~~~~-~l~~~i~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~l~-~lp~~l~~l~-~L~~L 302 (471)
++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++.+++|++|++++|.+. .+|..+.+++ +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 44444444444443 23444444455555555554444 34433 445555555555555444 4444444444 45555
Q ss_pred ecCCCCCC-cCccccCC--CCCCCEEEeeCCCCC-CcccccCCCCCCcEEEccCCCCC-cchhhhCCCCCCcEEEeecCC
Q 012082 303 DLGSNEFT-HLPDTIGC--LTSLKTLNVETNELE-DLPYTIGNCSSLTELRLDFNQLR-ALPEAIGKLECLEILTLHYNR 377 (471)
Q Consensus 303 ~l~~~~l~-~l~~~l~~--l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~ 377 (471)
++++|.++ .+|..+.. +++|++|++++|.+. .+|..+.++++|+.|++++|.+. .+|..++.+++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 55555444 23334433 566777777777666 45777888889999999988885 667788889999999999998
Q ss_pred CCC-CchhccCCCCCcEEEeeCCCCC-cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC-cCch
Q 012082 378 IKG-LPTTIGNLTKLKELDVSFNELE-SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR-ILPD 454 (471)
Q Consensus 378 l~~-l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~ 454 (471)
+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|... ..+|.+++.+++|++|+|++|++. .+|.
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 885 7888888999999999999888 66778888999999999988432 478889999999999999999998 7888
Q ss_pred hhhcCCCCcEEEccC
Q 012082 455 SFRLLSKLRVFRAMR 469 (471)
Q Consensus 455 ~l~~L~~L~~L~l~~ 469 (471)
.++.+++|+.|++.+
T Consensus 533 ~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNT 547 (768)
T ss_dssp GGGGCTTCCEEECCS
T ss_pred HHcCCCCCCEEECCC
Confidence 899999999998864
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=6.8e-25 Score=233.36 Aligned_cols=263 Identities=24% Similarity=0.331 Sum_probs=137.4
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEe
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDL 281 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L 281 (471)
.++.+++.++....+. +..+..+++|++|++++|.+..+|..+.++++|++|++++|.+..+ |..++.+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS--SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCC--TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccC--HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 4556666655443321 2335556666666666666666666666666666666666666544 334555555555555
Q ss_pred eCCCCC-Ccch-hhhCCCCCcEEecCCCCCCcC---ccccCCCCCCCEEEeeCCCCCCc-ccc-----------------
Q 012082 282 HANRLK-TLPA-TFGNLINLMNLDLGSNEFTHL---PDTIGCLTSLKTLNVETNELEDL-PYT----------------- 338 (471)
Q Consensus 282 ~~~~l~-~lp~-~l~~l~~L~~L~l~~~~l~~l---~~~l~~l~~L~~L~l~~~~l~~l-~~~----------------- 338 (471)
++|.+. .+|. .+..+++|++|++++|.++.+ +..++.+++|++|++++|.+..+ +..
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 555544 3332 255555555555555555433 33444455555555555544332 233
Q ss_pred --------cCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCC--C--chhccCCCCCcEEEeeCCCCCcc-
Q 012082 339 --------IGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKG--L--PTTIGNLTKLKELDVSFNELESI- 404 (471)
Q Consensus 339 --------l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~--l--~~~l~~l~~L~~L~L~~n~l~~l- 404 (471)
+..+++|+.|++++|.+... +..++.+++|+.|++++|.+.+ + +..+..+++|+.|++++|.++.+
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 44455555555555554332 3344455555555555555543 1 13455555555555555555544
Q ss_pred hhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEccC
Q 012082 405 TENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 405 ~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~~ 469 (471)
+..+..+++|+.|++++|... ...|.++..+++| +|++++|+++.++ ..+..+++|+.|++.+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLT-SSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-GGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred hhhhccccCCCEEECCCCccC-cCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 344555555666666555221 2234455555666 6666666665333 3455666666665543
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.9e-25 Score=235.02 Aligned_cols=260 Identities=25% Similarity=0.333 Sum_probs=218.9
Q ss_pred cCCCcEEEEecCCCCCcccccc-hhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcch-hhcCCCCC
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLP-VSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPD-SFGDLINL 276 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L 276 (471)
...+++.+++.++.... +| ..+..+++|++|++++|.+..++ ..+..+++|++|+|++|.+..+|. .|+++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCC---cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 45688999999875543 34 34678999999999999999875 489999999999999999998754 57999999
Q ss_pred cEEEeeCCCCCCcchh-hhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCC-
Q 012082 277 IDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFN- 353 (471)
Q Consensus 277 ~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~- 353 (471)
++|+|++|.++.+|.. ++++++|++|++++|.++.++ ..++.+++|++|++++|.+..++ +..+++|+.|++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCc
Confidence 9999999999999876 589999999999999999775 46899999999999999988765 344555555555554
Q ss_pred ------------------CCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCC
Q 012082 354 ------------------QLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESI-TENLCFAVSL 414 (471)
Q Consensus 354 ------------------~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L 414 (471)
.+..++.. ..++|+.|++++|.+++. .++..+++|+.|+|++|.+..+ +..++.+++|
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred cccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 44444332 235788999999988875 6788999999999999999866 6778899999
Q ss_pred cEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 415 KKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 415 ~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
+.|+|++| .+..+|..++.+++|+.|+|++|.++.+|..+..+++|+.|++.+
T Consensus 281 ~~L~Ls~N--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 281 ERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp CEEECTTS--CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCS
T ss_pred CEEECCCC--CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCC
Confidence 99999999 667888888899999999999999999999999999999999875
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=5.9e-25 Score=229.57 Aligned_cols=125 Identities=23% Similarity=0.314 Sum_probs=99.3
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
.+++.|+++++....+ .+..+..+++|++|++++|.+..+ |..+.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCccccc--ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 6788888888765443 245678888888888888888876 66788888888888888888888776 788888888
Q ss_pred eeCCCCCC--cchhhhCCCCCcEEecCCCCCCcCccccCCCCCC--CEEEeeCCCC
Q 012082 281 LHANRLKT--LPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSL--KTLNVETNEL 332 (471)
Q Consensus 281 L~~~~l~~--lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L--~~L~l~~~~l 332 (471)
+++|.++. +|..++++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 88888875 56788888888888888888775 345667777 8888888876
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=219.93 Aligned_cols=258 Identities=23% Similarity=0.316 Sum_probs=210.6
Q ss_pred EEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeCC
Q 012082 207 LDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHAN 284 (471)
Q Consensus 207 L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~ 284 (471)
.+.+++. +..+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 36 c~~~~~~---l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 36 CKGSSGS---LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EECCSTT---CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eeCCCCC---ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 5555543 344565443 589999999999998765 789999999999999999977 466999999999999999
Q ss_pred CCCCcchh-hhCCCCCcEEecCCCCCCcCcc--ccCCCCCCCEEEeeCC-CCCCc-ccccCCCCCCcEEEccCCCCCcc-
Q 012082 285 RLKTLPAT-FGNLINLMNLDLGSNEFTHLPD--TIGCLTSLKTLNVETN-ELEDL-PYTIGNCSSLTELRLDFNQLRAL- 358 (471)
Q Consensus 285 ~l~~lp~~-l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~-~l~~l-~~~l~~l~~L~~L~l~~~~l~~l- 358 (471)
.++.+|.. +.++++|++|++++|.++.+|. .+..+++|++|++++| .+..+ +..+..+++|+.|++++|.+..+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 99998876 8999999999999999999887 7889999999999998 46666 45788999999999999999866
Q ss_pred hhhhCCCCCCcEEEeecCCCCCCchh-ccCCCCCcEEEeeCCCCCcchh----hhcCCCCCcEEEccCCcCC---CCccc
Q 012082 359 PEAIGKLECLEILTLHYNRIKGLPTT-IGNLTKLKELDVSFNELESITE----NLCFAVSLKKLNVGNNFAD---LRALP 430 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~----~l~~~~~L~~L~L~~n~~~---l~~lp 430 (471)
+..++.+++|+.|++++|.+..++.. +..+++|+.|++++|.++.++. .......++.+++.++... +..+|
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~ 270 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM 270 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence 67889999999999999999887754 4458999999999999885432 1234566778888776321 22467
Q ss_pred hhccCCCCccEEEeecCCCCcCchh-hhcCCCCcEEEccC
Q 012082 431 RSIGNLEMLEQLDISDDQIRILPDS-FRLLSKLRVFRAMR 469 (471)
Q Consensus 431 ~~l~~l~~L~~L~L~~n~l~~lp~~-l~~L~~L~~L~l~~ 469 (471)
.++..+++|++|++++|+++.+|.. +..+++|+.|++.+
T Consensus 271 ~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 271 KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 7788888899999999988888876 48888898888765
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=3.4e-25 Score=215.49 Aligned_cols=239 Identities=23% Similarity=0.304 Sum_probs=202.8
Q ss_pred EEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchh-hcCCCCccEEEeecCCCCCc---chhhcCCCCCcEEEe
Q 012082 206 VLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSS-IAGIKTLKKLDIHSNQLINL---PDSFGDLINLIDLDL 281 (471)
Q Consensus 206 ~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L 281 (471)
.++..+.. +..+|..+ .++|++|++++|.+..+|.. +.++++|++|++++|.+..+ +..+..+++|++|++
T Consensus 11 ~l~c~~~~---l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 11 EIRCNSKG---LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EEECCSSC---CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred EEEcCCCC---cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45555543 34445433 36899999999999998765 68999999999999998855 577778999999999
Q ss_pred eCCCCCCcchhhhCCCCCcEEecCCCCCCcCcc--ccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCc-
Q 012082 282 HANRLKTLPATFGNLINLMNLDLGSNEFTHLPD--TIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRA- 357 (471)
Q Consensus 282 ~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~- 357 (471)
++|.+..+|..+..+++|++|++++|.++.++. .+..+++|++|++++|.+... +..+..+++|+.|++++|.+..
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 999999999889999999999999999988764 788999999999999988754 5567889999999999999875
Q ss_pred -chhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhcc
Q 012082 358 -LPEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIG 434 (471)
Q Consensus 358 -l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 434 (471)
+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..++. .+..+++|+.|++++|... ...|..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHHH
Confidence 778889999999999999999985 6788999999999999999987764 6778899999999999432 34456778
Q ss_pred CCC-CccEEEeecCCCC
Q 012082 435 NLE-MLEQLDISDDQIR 450 (471)
Q Consensus 435 ~l~-~L~~L~L~~n~l~ 450 (471)
.++ +|++|+|++|.+.
T Consensus 245 ~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCTTCCEEECTTCCEE
T ss_pred hhhccCCEEEccCCCee
Confidence 885 9999999999887
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=8.8e-25 Score=224.26 Aligned_cols=264 Identities=24% Similarity=0.321 Sum_probs=218.0
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCC-CC-chhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIM-AL-PSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLID 278 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~-~l-~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~ 278 (471)
.+++.|+++++....+ .+..+.++++|++|++++|.+. .+ +..+.++++|++|++++|.+..+ |..++++++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL--NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEE--CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCCccCcC--ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 6799999999866543 3677899999999999999886 44 56789999999999999999876 788999999999
Q ss_pred EEeeCCCCCC-cchh--hhCCCCCcEEecCCCCCCcC-ccc-cCCCCCCCEEEeeCCCCCCcc-ccc-------------
Q 012082 279 LDLHANRLKT-LPAT--FGNLINLMNLDLGSNEFTHL-PDT-IGCLTSLKTLNVETNELEDLP-YTI------------- 339 (471)
Q Consensus 279 L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~l~~l-~~~-l~~l~~L~~L~l~~~~l~~l~-~~l------------- 339 (471)
|++++|.++. +|.. +..+++|++|++++|.++.+ |.. ++.+++|++|++++|.+..++ ..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 9999999985 3444 89999999999999999977 544 789999999999999877542 222
Q ss_pred ---------------------CCCCCCcEEEccCCCCCc-chhhhC----------------------------------
Q 012082 340 ---------------------GNCSSLTELRLDFNQLRA-LPEAIG---------------------------------- 363 (471)
Q Consensus 340 ---------------------~~l~~L~~L~l~~~~l~~-l~~~l~---------------------------------- 363 (471)
..+++|+.|++++|.+.. .+..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 234678888888887752 222111
Q ss_pred -----CCCCCcEEEeecCCCCC-CchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCcc-chhccC
Q 012082 364 -----KLECLEILTLHYNRIKG-LPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRAL-PRSIGN 435 (471)
Q Consensus 364 -----~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~ 435 (471)
..++|+.|++++|.+.. .|..+..+++|+.|++++|.+..+ +..+..+++|++|++++| .+..+ |..++.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~ 345 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--FLGSIDSRMFEN 345 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECGGGGTT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC--ccCCcChhHhcC
Confidence 12578899999998888 567889999999999999999976 457888999999999999 44555 677899
Q ss_pred CCCccEEEeecCCCCcC-chhhhcCCCCcEEEccC
Q 012082 436 LEMLEQLDISDDQIRIL-PDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 436 l~~L~~L~L~~n~l~~l-p~~l~~L~~L~~L~l~~ 469 (471)
+++|++|+|++|+++.+ |..+..+++|+.|++.+
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 99999999999999966 67899999999999875
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.5e-25 Score=233.81 Aligned_cols=264 Identities=27% Similarity=0.323 Sum_probs=149.3
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcchh-hcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 279 (471)
..++.|+++++....+ .+..+..+++|++|++++|.+..++ ..+.++++|++|++++|.+..++.. ++++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 3556666666543322 1344555666666666666665543 4556666666666666666655433 6666666666
Q ss_pred EeeCCCCCC--cchhhhCCCCCcEEecCCCC-CCcCc-cccCCCCCCCEEEeeCCCCCC-cccccC--------------
Q 012082 280 DLHANRLKT--LPATFGNLINLMNLDLGSNE-FTHLP-DTIGCLTSLKTLNVETNELED-LPYTIG-------------- 340 (471)
Q Consensus 280 ~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~-l~~l~-~~l~~l~~L~~L~l~~~~l~~-l~~~l~-------------- 340 (471)
++++|.++. .|..+.++++|++|++++|. +..+| ..++.+++|++|++++|.+.. .|..+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 666666553 24455666666666666664 34443 345555666666666555543 233333
Q ss_pred ----------CCCCCcEEEccCCCCCcch---hh-----------------------------hC---------------
Q 012082 341 ----------NCSSLTELRLDFNQLRALP---EA-----------------------------IG--------------- 363 (471)
Q Consensus 341 ----------~l~~L~~L~l~~~~l~~l~---~~-----------------------------l~--------------- 363 (471)
.+++|+.|++++|.+..++ .. +.
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 3556666666665544321 00 00
Q ss_pred --------------------------------------------CCCCCcEEEeecCCCCCCchhc-cCCCCCcEEEeeC
Q 012082 364 --------------------------------------------KLECLEILTLHYNRIKGLPTTI-GNLTKLKELDVSF 398 (471)
Q Consensus 364 --------------------------------------------~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~L~~ 398 (471)
...+|+.|++++|.+..+|..+ ..+++|+.|++++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~ 343 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCS
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccC
Confidence 0123444444444444455444 3567777777777
Q ss_pred CCCCcc-h---hhhcCCCCCcEEEccCCcCCCCccc---hhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 399 NELESI-T---ENLCFAVSLKKLNVGNNFADLRALP---RSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 399 n~l~~l-~---~~l~~~~~L~~L~L~~n~~~l~~lp---~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
|.+... + ..++.+++|++|++++| .+..++ ..++.+++|++|++++|+++.+|..+..+++|+.|++.+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~ 419 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQN--HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTS--CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTT
T ss_pred CccccccccchhhhhccccCcEEEccCC--cccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCC
Confidence 776642 2 22456677777777777 444554 346677777777777777777777777777777777653
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.2e-24 Score=223.54 Aligned_cols=246 Identities=24% Similarity=0.275 Sum_probs=207.2
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.|+++++....+ | .+..+++|++|++++|.+..++ ++.+++|++|++++|.++.++ ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 347889999999866543 4 5788999999999999999886 889999999999999999885 8899999999
Q ss_pred EeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCC-CCCCcccccCCCCCCcEEEccCCCCCcc
Q 012082 280 DLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETN-ELEDLPYTIGNCSSLTELRLDFNQLRAL 358 (471)
Q Consensus 280 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~l~~l 358 (471)
++++|.++.+| ++.+++|++|++++|.++.++ ++.+++|++|++++| .+..+ .+..+++|+.|++++|.++.+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99999999886 889999999999999999874 889999999999999 45555 478899999999999999988
Q ss_pred hhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCC
Q 012082 359 PEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEM 438 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~ 438 (471)
+ ++.+++|+.|++++|.++.++ +..+++|+.|++++|.++.+| +..+++|+.|++++| .+..+| ++.+++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N--~l~~~~--~~~l~~ 255 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVN--PLTELD--VSTLSK 255 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS--CCSCCC--CTTCTT
T ss_pred c--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCC--cCCCcC--HHHCCC
Confidence 7 789999999999999999873 788999999999999999987 778999999999999 455665 456777
Q ss_pred ccEEEeecCCCCcCc---------hhhhcCCCCcEEEccC
Q 012082 439 LEQLDISDDQIRILP---------DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 439 L~~L~L~~n~l~~lp---------~~l~~L~~L~~L~l~~ 469 (471)
|+.|++++|+++.+. ..++.|++|+.|++.+
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTH 295 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTT
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCC
Confidence 776666665554321 0146789999988865
No 38
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.3e-24 Score=227.37 Aligned_cols=233 Identities=31% Similarity=0.337 Sum_probs=185.2
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEe
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDL 281 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 281 (471)
.+++.|+++++.... +|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~~---lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS---LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC---CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC---CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 577788888775543 333 46778888888888877766 66778888888888887766 5677888888
Q ss_pred eCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhh
Q 012082 282 HANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEA 361 (471)
Q Consensus 282 ~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 361 (471)
++|.++.+|.. +++|++|++++|.++.+|. .+.+|+.|++++|.+..+| ..+++|+.|++++|.++.+|..
T Consensus 129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 129 FGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc
Confidence 88888877764 4778888888888877765 3467888888888888777 4568899999999988887753
Q ss_pred hCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccE
Q 012082 362 IGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQ 441 (471)
Q Consensus 362 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~ 441 (471)
+++|+.|++++|.++.+|.. +++|+.|++++|.++.++ ..+++|++|++++| .+..+|. .+++|+.
T Consensus 200 ---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N--~L~~lp~---~~~~L~~ 265 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPM---LPSGLLS 265 (622)
T ss_dssp ---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--CCSCCCC---CCTTCCE
T ss_pred ---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCC--CCCcCCc---ccccCcE
Confidence 47888899999988887753 478999999999999887 45689999999998 5667876 6788999
Q ss_pred EEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 442 LDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 442 L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
|+|++|+++.+|..+.++++|+.|++.+
T Consensus 266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 266 LSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp EECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred EeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 9999999999999999999999999875
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.3e-24 Score=219.45 Aligned_cols=247 Identities=21% Similarity=0.237 Sum_probs=202.9
Q ss_pred ccCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcE
Q 012082 199 SAKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLID 278 (471)
Q Consensus 199 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 278 (471)
....+++.|+++++....+ + ++.+++|++|++++|.+..++ ++++++|++|++++|.++.+| ++.+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCE
Confidence 4567899999999876654 3 788999999999999999885 889999999999999999886 889999999
Q ss_pred EEeeCCCCCCcchhhhCCCCCcEEecCCC-CCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCc
Q 012082 279 LDLHANRLKTLPATFGNLINLMNLDLGSN-EFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRA 357 (471)
Q Consensus 279 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~ 357 (471)
|++++|.++.++ ++.+++|++|++++| .+..+ .++.+++|++|++++|.+..+| +..+++|+.|++++|.++.
T Consensus 132 L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 132 LNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp EECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC
T ss_pred EECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe
Confidence 999999999875 889999999999999 45555 4788999999999999999987 8899999999999999988
Q ss_pred chhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcC---------CCCc
Q 012082 358 LPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFA---------DLRA 428 (471)
Q Consensus 358 l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~---------~l~~ 428 (471)
++ ++.+++|+.|++++|+++++| +..+++|+.|++++|.++.++ ...+++|+.|++++|.. ....
T Consensus 206 ~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 206 LD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIY 279 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred ec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence 74 789999999999999999987 888999999999999998876 34567777666655411 1233
Q ss_pred cchhccCCCCccEEEeecCCCC-cCchhh--------hcCCCCcEEEcc
Q 012082 429 LPRSIGNLEMLEQLDISDDQIR-ILPDSF--------RLLSKLRVFRAM 468 (471)
Q Consensus 429 lp~~l~~l~~L~~L~L~~n~l~-~lp~~l--------~~L~~L~~L~l~ 468 (471)
+| ++.+++|+.|++++|... .+|... ..+++|+.|++.
T Consensus 280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~ 326 (457)
T 3bz5_A 280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLN 326 (457)
T ss_dssp EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECT
T ss_pred cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECC
Confidence 43 467899999999998654 555432 334556666554
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.3e-24 Score=228.46 Aligned_cols=128 Identities=25% Similarity=0.371 Sum_probs=75.2
Q ss_pred cCCCCCCcEEEccCCCCCcch---hhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhh-------
Q 012082 339 IGNCSSLTELRLDFNQLRALP---EAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENL------- 408 (471)
Q Consensus 339 l~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l------- 408 (471)
++.+++|+.|++++|.++.++ ..+..+++|+.|++++|+++.+|..+..+++|+.|++++|.+..++..+
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L 436 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL 436 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEE
Confidence 344555555555555555443 2355566666666666666666665666666666666666555443321
Q ss_pred -----------cCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEccC
Q 012082 409 -----------CFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 409 -----------~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~~ 469 (471)
..+++|++|++++| .+..+|. ...+++|++|+|++|+++.++ ..+..+++|+.|++.+
T Consensus 437 ~Ls~N~l~~~~~~l~~L~~L~Ls~N--~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 437 DVSNNNLDSFSLFLPRLQELYISRN--KLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ECCCCChhhhcccCChhcEEECCCC--ccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 13555666666666 3445654 345667777777777777554 3477777777777654
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=4.9e-25 Score=214.38 Aligned_cols=252 Identities=28% Similarity=0.344 Sum_probs=174.3
Q ss_pred CCcEEEEecCCCCCcccccch-hcCCCCCccEEEeeCCCCCCC---chhhcCCCCccEEEeecCCCCCcchhhcCCCCCc
Q 012082 202 TGAVVLDLRGKLTDQIEWLPV-SIGKLKDVTELNLSENRIMAL---PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLI 277 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~-~~~~l~~L~~L~L~~~~~~~l---~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~ 277 (471)
..++.|+++++.... ++. .+.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 467788887765543 333 356778888888888877654 4666677888888888888777777777888888
Q ss_pred EEEeeCCCCCCcch--hhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCCCCC--cccccCCCCCCcEEEccC
Q 012082 278 DLDLHANRLKTLPA--TFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELED--LPYTIGNCSSLTELRLDF 352 (471)
Q Consensus 278 ~L~L~~~~l~~lp~--~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~ 352 (471)
+|++++|.++.++. .+..+++|++|++++|.+... +..+..+++|++|++++|.+.. +|..+..+++|+.|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 88888887776653 677788888888888877643 4556777888888888887764 567777788888888888
Q ss_pred CCCCcc-hhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcc-hhhhcCCC-CCcEEEccCCcCCC--
Q 012082 353 NQLRAL-PEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESI-TENLCFAV-SLKKLNVGNNFADL-- 426 (471)
Q Consensus 353 ~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~-~L~~L~L~~n~~~l-- 426 (471)
|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+... +..+..++ +|++|++++|....
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 888766 456777888888888888877754 3667778888888888887754 34555553 78888888773321
Q ss_pred --CccchhccCCCCccEEEeecCCCC-cCchhhhcC
Q 012082 427 --RALPRSIGNLEMLEQLDISDDQIR-ILPDSFRLL 459 (471)
Q Consensus 427 --~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L 459 (471)
..++.|+.... .+.+..+.+. ..|..+++.
T Consensus 265 ~~~~~~~~l~~~~---~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 265 EHQSFLQWIKDQR---QLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp GGHHHHHHHHHTG---GGBSCGGGCBEEESGGGTTC
T ss_pred ChHHHHHHHHhhh---hhhccccccccCCchhhCCc
Confidence 12334444333 2333344444 455555543
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9.6e-25 Score=216.77 Aligned_cols=248 Identities=23% Similarity=0.319 Sum_probs=212.7
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchh-hcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDS-FGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L 279 (471)
..++.|+++++....+. +..+.++++|++|++++|.+..+ +..+.++++|++|++++|.++.+|.. ++++++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 58999999998665432 33688999999999999999986 46799999999999999999998766 8999999999
Q ss_pred EeeCCCCCCcch--hhhCCCCCcEEecCCC-CCCcC-ccccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCC
Q 012082 280 DLHANRLKTLPA--TFGNLINLMNLDLGSN-EFTHL-PDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQ 354 (471)
Q Consensus 280 ~L~~~~l~~lp~--~l~~l~~L~~L~l~~~-~l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~ 354 (471)
++++|.++.+|. .+.++++|++|++++| .+..+ +..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 999999999987 7899999999999999 57766 56788999999999999999876 7789999999999999999
Q ss_pred CCcchhhh-CCCCCCcEEEeecCCCCCCc----hhccCCCCCcEEEeeCCCCC-----cchhhhcCCCCCcEEEccCCcC
Q 012082 355 LRALPEAI-GKLECLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELE-----SITENLCFAVSLKKLNVGNNFA 424 (471)
Q Consensus 355 l~~l~~~l-~~l~~L~~L~l~~~~l~~l~----~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~~~~L~~L~L~~n~~ 424 (471)
++.++..+ ..+++|+.|++++|.++.++ ......+.++.+++.++.+. .++..+..+++|+.|++++|
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-- 287 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-- 287 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS--
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC--
Confidence 99888754 46899999999999998853 22345678999999999887 46778899999999999999
Q ss_pred CCCccchhc-cCCCCccEEEeecCCCCcCc
Q 012082 425 DLRALPRSI-GNLEMLEQLDISDDQIRILP 453 (471)
Q Consensus 425 ~l~~lp~~l-~~l~~L~~L~L~~n~l~~lp 453 (471)
.+..+|..+ +.+++|++|+|++|.+...+
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 566888875 89999999999999988443
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=5.4e-24 Score=224.56 Aligned_cols=259 Identities=25% Similarity=0.333 Sum_probs=186.4
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
..++.|+++++....+. +..+..+++|++|++++|.+..+ |..|.++++|++|++++|.++.+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELR--MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCC--GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccC--hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 68899999998665432 46788999999999999999886 67789999999999999999988876 899999999
Q ss_pred eeCCCCCCcc--hhhhCCCCCcEEecCCCCCCcCccccCCCCCC--CEEEeeC---------------------------
Q 012082 281 LHANRLKTLP--ATFGNLINLMNLDLGSNEFTHLPDTIGCLTSL--KTLNVET--------------------------- 329 (471)
Q Consensus 281 L~~~~l~~lp--~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L--~~L~l~~--------------------------- 329 (471)
+++|.++.+| ..+.++++|++|++++|.++.. .+..+++| ++|++++
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999998764 7899999999999999877531 12222222 3333333
Q ss_pred --------------------------------------------------------------------------------
Q 012082 330 -------------------------------------------------------------------------------- 329 (471)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (471)
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence
Q ss_pred CCCC-Cccccc-----------------------------------------------------CCCCCCcEEEccCCCC
Q 012082 330 NELE-DLPYTI-----------------------------------------------------GNCSSLTELRLDFNQL 355 (471)
Q Consensus 330 ~~l~-~l~~~l-----------------------------------------------------~~l~~L~~L~l~~~~l 355 (471)
|.+. .+|..+ ..+++|+.|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 3322 223222 4556667777777766
Q ss_pred Cc-chhhhCCCCCCcEEEeecCCCCCCc---hhccCCCCCcEEEeeCCCCCc-chhh-hcCCCCCcEEEccCCcCCCCcc
Q 012082 356 RA-LPEAIGKLECLEILTLHYNRIKGLP---TTIGNLTKLKELDVSFNELES-ITEN-LCFAVSLKKLNVGNNFADLRAL 429 (471)
Q Consensus 356 ~~-l~~~l~~l~~L~~L~l~~~~l~~l~---~~l~~l~~L~~L~L~~n~l~~-l~~~-l~~~~~L~~L~L~~n~~~l~~l 429 (471)
+. +|..++.+++|+.|++++|.++.++ ..+..+++|+.|++++|.+.. ++.. +..+++|+.|++++|... ..+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 444 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT-GSV 444 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC-GGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC-cch
Confidence 54 4556667777777777777766543 456667777777777777765 5543 455667777777776322 233
Q ss_pred chhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 430 PRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 430 p~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
|..+. ++|+.|++++|+++.+|..+..+++|+.|++.+
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCS
T ss_pred hhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCC
Confidence 33222 689999999999999998888999999999865
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-25 Score=220.36 Aligned_cols=237 Identities=23% Similarity=0.289 Sum_probs=189.4
Q ss_pred hhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCc
Q 012082 222 VSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLM 300 (471)
Q Consensus 222 ~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~ 300 (471)
.....+++|++|++++|.+..++ ..+.++++|++|++++|.+..++. ++.+++|++|++++|.++.+| .+++|+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 34455678889999988888764 678888899999999888876655 788889999999988887665 347888
Q ss_pred EEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCCCcch-hhh-CCCCCCcEEEeecCC
Q 012082 301 NLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRALP-EAI-GKLECLEILTLHYNR 377 (471)
Q Consensus 301 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~-~~l-~~l~~L~~L~l~~~~ 377 (471)
+|++++|.++.++.. .+++|++|++++|.+..++ ..+..+++|+.|++++|.++.++ ..+ ..+++|+.|++++|.
T Consensus 103 ~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp EEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 999999888876543 4678899999998888774 46677888999999998887653 334 467889999999998
Q ss_pred CCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC--cCchh
Q 012082 378 IKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR--ILPDS 455 (471)
Q Consensus 378 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~ 455 (471)
++.++.. ..+++|+.|++++|.++.++..+..+++|+.|++++| .+..+|..+..+++|+.|++++|.+. .+|.+
T Consensus 181 l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N--~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 181 IYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred Ccccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCC--cccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 8887543 3488899999999988888877888888999999888 56678888888889999999998888 67788
Q ss_pred hhcCCCCcEEEcc
Q 012082 456 FRLLSKLRVFRAM 468 (471)
Q Consensus 456 l~~L~~L~~L~l~ 468 (471)
+..+++|+.|++.
T Consensus 258 ~~~~~~L~~l~l~ 270 (317)
T 3o53_A 258 FSKNQRVQTVAKQ 270 (317)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhccccceEEECC
Confidence 8888888777654
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=228.17 Aligned_cols=109 Identities=31% Similarity=0.430 Sum_probs=61.4
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcch-hhcCCCCCc
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLI 277 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~ 277 (471)
....+++|+++++....+ .+..+.++++|++|++++|.+..++ ..|.++++|++|++++|.++.++. .++++++|+
T Consensus 50 ~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TCSSCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred CCCCceEEECCCCcCCcc--CcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 345566666666543322 1234555666666666666655543 455666666666666666655543 355666666
Q ss_pred EEEeeCCCCCC--cchhhhCCCCCcEEecCCCCCC
Q 012082 278 DLDLHANRLKT--LPATFGNLINLMNLDLGSNEFT 310 (471)
Q Consensus 278 ~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~l~ 310 (471)
+|++++|.+.. +|..++++++|++|++++|.++
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 66666665553 4555666666666666655544
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.6e-24 Score=218.43 Aligned_cols=238 Identities=24% Similarity=0.347 Sum_probs=176.7
Q ss_pred EEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEee
Q 012082 205 VVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLH 282 (471)
Q Consensus 205 ~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 282 (471)
..++..+.. +..+|..+ .+++++|++++|.+..+ +..|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 57 ~~v~c~~~~---l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 57 SKVVCTRRG---LSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp CEEECCSSC---CSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cEEEECCCC---cCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345544432 33344433 25788888888888775 566788888888888888888664 667888888888888
Q ss_pred CCCCCCcchh-hhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeC-CCCCCccc-ccCCCCCCcEEEccCCCCCcc
Q 012082 283 ANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVET-NELEDLPY-TIGNCSSLTELRLDFNQLRAL 358 (471)
Q Consensus 283 ~~~l~~lp~~-l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l 358 (471)
+|.++.+|.. +..+++|++|++++|.++.++. .+..+++|+.|++++ +.+..++. .+..+++|+.|++++|.++.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 8888877654 7778888888888888887654 567788888888887 44555543 467788888888888888877
Q ss_pred hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCccch-hccC
Q 012082 359 PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALPR-SIGN 435 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~ 435 (471)
|. +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..+ +..+..+++|+.|+|++| .+..+|. .+..
T Consensus 212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~ 288 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN--NLSSLPHDLFTP 288 (452)
T ss_dssp CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCTTSSTT
T ss_pred cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC--cCCccChHHhcc
Confidence 64 67788888888888888874 67788888888888888888765 445677788888888888 4455554 4567
Q ss_pred CCCccEEEeecCCCC
Q 012082 436 LEMLEQLDISDDQIR 450 (471)
Q Consensus 436 l~~L~~L~L~~n~l~ 450 (471)
+++|+.|+|++|.+.
T Consensus 289 l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 289 LRYLVELHLHHNPWN 303 (452)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEccCCCcC
Confidence 888888888887665
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=5.9e-24 Score=217.54 Aligned_cols=238 Identities=26% Similarity=0.385 Sum_probs=183.1
Q ss_pred EEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEee
Q 012082 205 VVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLH 282 (471)
Q Consensus 205 ~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~ 282 (471)
..++..+. .+..+|..+. ++++.|++++|.+..++ ..|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 46 ~~v~c~~~---~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 46 SKVICVRK---NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp CEEECCSC---CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CEEEeCCC---CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34554443 3334454433 57888888888888764 67888888888988888888764 668888888899988
Q ss_pred CCCCCCcch-hhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCC-CCCCccc-ccCCCCCCcEEEccCCCCCcc
Q 012082 283 ANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETN-ELEDLPY-TIGNCSSLTELRLDFNQLRAL 358 (471)
Q Consensus 283 ~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~-~l~~l~~-~l~~l~~L~~L~l~~~~l~~l 358 (471)
+|+++.+|. .+..+++|++|++++|.+..++. .+..+++|++|++++| .+..++. .+.++++|+.|++++|.++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 888888765 58888888888888888887754 6778888888888884 4555543 577888888888888888888
Q ss_pred hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCcEEEccCCcCCCCccch-hccC
Q 012082 359 PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRALPR-SIGN 435 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~ 435 (471)
|. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|+|++| .+..+|. .+..
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~ 277 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN--NLTLLPHDLFTP 277 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS--CCCCCCTTTTSS
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC--CCCccChhHhcc
Confidence 75 77888888888888888885 577888888888888888888664 45677888888888888 4555654 4677
Q ss_pred CCCccEEEeecCCCC
Q 012082 436 LEMLEQLDISDDQIR 450 (471)
Q Consensus 436 l~~L~~L~L~~n~l~ 450 (471)
+++|+.|+|++|.+.
T Consensus 278 l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 278 LHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECCSSCEE
T ss_pred ccCCCEEEcCCCCcc
Confidence 888888888887664
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=229.76 Aligned_cols=232 Identities=24% Similarity=0.306 Sum_probs=191.5
Q ss_pred CCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEec
Q 012082 226 KLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304 (471)
Q Consensus 226 ~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 304 (471)
.+++|++|++++|.+..++ ..+.++++|++|+|++|.++..+. ++.+++|++|+|++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3448999999999888764 678899999999999998886655 8889999999999998887653 378999999
Q ss_pred CCCCCCcCccccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcc-hhhhC-CCCCCcEEEeecCCCCCC
Q 012082 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRAL-PEAIG-KLECLEILTLHYNRIKGL 381 (471)
Q Consensus 305 ~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~-~l~~L~~L~l~~~~l~~l 381 (471)
++|.++.++.. .+++|++|++++|.+..+ |..++.+++|+.|++++|.++.+ |..+. .+++|+.|++++|.++.+
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99988877653 568899999999998876 45678889999999999998763 44554 788999999999998887
Q ss_pred chhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC--cCchhhhcC
Q 012082 382 PTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR--ILPDSFRLL 459 (471)
Q Consensus 382 ~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L 459 (471)
+.. ..+++|+.|+|++|.++.++..+..+++|+.|++++| .+..+|.+++.+++|+.|++++|.+. .+|.++..+
T Consensus 185 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 KGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp ECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS--CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ccc-ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC--cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 543 3588999999999999988888888899999999988 56678888888999999999999888 777888888
Q ss_pred CCCcEEEc
Q 012082 460 SKLRVFRA 467 (471)
Q Consensus 460 ~~L~~L~l 467 (471)
+.|+.+.+
T Consensus 262 ~~L~~l~~ 269 (487)
T 3oja_A 262 QRVQTVAK 269 (487)
T ss_dssp HHHHHHHH
T ss_pred CCCcEEec
Confidence 88777665
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.2e-25 Score=219.51 Aligned_cols=236 Identities=19% Similarity=0.227 Sum_probs=135.9
Q ss_pred CCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCC--Ccchhhc-------CCCCCcEEEeeCCCCC-Ccchhh--
Q 012082 226 KLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLI--NLPDSFG-------DLINLIDLDLHANRLK-TLPATF-- 293 (471)
Q Consensus 226 ~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~l~-~lp~~l-- 293 (471)
..++|+.|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344556666666666 555544433 666666666553 2344443 5666666666666665 445544
Q ss_pred hCCCCCcEEecCCCCCCcCccccCCC-----CCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCCCc---chhhh--
Q 012082 294 GNLINLMNLDLGSNEFTHLPDTIGCL-----TSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRA---LPEAI-- 362 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~l~~~l~~l-----~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~---l~~~l-- 362 (471)
..+++|++|++++|.++.+|..++.+ ++|++|++++|.+..++ ..++++++|+.|++++|.+.. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 56666666666666666555555444 66666666666666554 455666666666666666532 23333
Q ss_pred CCCCCCcEEEeecCCCCCCc----hhccCCCCCcEEEeeCCCCCcch--hhhcCCCCCcEEEccCCcCCCCccchhccCC
Q 012082 363 GKLECLEILTLHYNRIKGLP----TTIGNLTKLKELDVSFNELESIT--ENLCFAVSLKKLNVGNNFADLRALPRSIGNL 436 (471)
Q Consensus 363 ~~l~~L~~L~l~~~~l~~l~----~~l~~l~~L~~L~L~~n~l~~l~--~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l 436 (471)
+.+++|+.|++++|.++.++ ..+..+++|+.|++++|.+...+ ..+..+++|++|++++| .+..+|.++.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT--GLKQVPKGLP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS--CCSSCCSSCC--
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC--ccChhhhhcc--
Confidence 56666666666666666422 22345566666666666665433 23334566666666666 3445665554
Q ss_pred CCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 437 EMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 437 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
++|++|++++|+++.+|. +..+++|+.|++.+
T Consensus 274 ~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence 566666666666666655 66666666666543
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.6e-23 Score=225.85 Aligned_cols=247 Identities=26% Similarity=0.361 Sum_probs=137.0
Q ss_pred hcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCC
Q 012082 223 SIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTL-PATFGNLINL 299 (471)
Q Consensus 223 ~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L 299 (471)
.+.++++|++|++++|.+..+|. .|.++++|++|++++|.+..++ ..|+++++|++|++++|.+... |..+.++++|
T Consensus 68 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 34444444444444444444443 2444444444444444444443 3344444444444444444432 2334444444
Q ss_pred cEEecCCCCCCcCccc-c--CCCCCCCEEEeeCCCCCCcc-cccCCC---------------------------CCCcEE
Q 012082 300 MNLDLGSNEFTHLPDT-I--GCLTSLKTLNVETNELEDLP-YTIGNC---------------------------SSLTEL 348 (471)
Q Consensus 300 ~~L~l~~~~l~~l~~~-l--~~l~~L~~L~l~~~~l~~l~-~~l~~l---------------------------~~L~~L 348 (471)
++|++++|.++.++.. + ..+++|++|++++|.+..++ ..+..+ ++|+.|
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L 227 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEE
Confidence 4444444444433221 1 12344455555444444332 111111 334444
Q ss_pred EccCCCCCcc-hhhhCCCC--CCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCc
Q 012082 349 RLDFNQLRAL-PEAIGKLE--CLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 349 ~l~~~~l~~l-~~~l~~l~--~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~ 423 (471)
++++|.+... +..+..++ +|+.|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.
T Consensus 228 ~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp ECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred EccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence 4444444332 22344443 388888888887774 46678888888888888887754 4467778888888887653
Q ss_pred CC----CCccch----hccCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEccC
Q 012082 424 AD----LRALPR----SIGNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 424 ~~----l~~lp~----~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~~ 469 (471)
.. ...+|. .++.+++|++|++++|+++.++ ..+..+++|+.|++.+
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTT
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCC
Confidence 21 113443 5778899999999999998654 5688999999998754
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=230.41 Aligned_cols=264 Identities=24% Similarity=0.356 Sum_probs=144.5
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCC-CCC-chhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRI-MAL-PSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLID 278 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~-~~l-~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~ 278 (471)
..++.|+++++....+ .+..+..+++|++|++++|.. ..+ |..|.++++|++|+|++|.+..+ |..|+++++|++
T Consensus 24 ~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp TTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCcCEEECCCCcCCcc--ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4556666666544332 134455666666666666632 233 44556666666666666665544 555666666666
Q ss_pred EEeeCCCCCC-cchh--hhCCCCCcEEecCCCCCCcC--ccccCCCCCCCEEEeeCCCCCCc------------------
Q 012082 279 LDLHANRLKT-LPAT--FGNLINLMNLDLGSNEFTHL--PDTIGCLTSLKTLNVETNELEDL------------------ 335 (471)
Q Consensus 279 L~L~~~~l~~-lp~~--l~~l~~L~~L~l~~~~l~~l--~~~l~~l~~L~~L~l~~~~l~~l------------------ 335 (471)
|+|++|.+.. +|.. +.++++|++|++++|.++.+ +..++++++|++|++++|.+..+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 6666665553 3333 55666666666666655543 23455666666666665554321
Q ss_pred ---------ccccCCCCC------CcEEEccCCCCC-cchhh------------------------------------hC
Q 012082 336 ---------PYTIGNCSS------LTELRLDFNQLR-ALPEA------------------------------------IG 363 (471)
Q Consensus 336 ---------~~~l~~l~~------L~~L~l~~~~l~-~l~~~------------------------------------l~ 363 (471)
+..+..+++ |+.|++++|.+. ..+.. +.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 111222222 566666665432 11100 00
Q ss_pred C--CCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCcc-chhccCCCC
Q 012082 364 K--LECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRAL-PRSIGNLEM 438 (471)
Q Consensus 364 ~--l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~l~~ 438 (471)
. .++|+.|++++|.+..+ +..+..+++|+.|+|++|.+..+ +..+..+++|++|+|++|. +..+ |..+..+++
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL--LGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC--CSCCCSCSCSSCTT
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC--CCccCHHHhcCCCC
Confidence 1 24566666666666653 45566666677777776666654 3345566667777776662 3333 455666666
Q ss_pred ccEEEeecCCCCcCc-hhhhcCCCCcEEEccC
Q 012082 439 LEQLDISDDQIRILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 439 L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~~ 469 (471)
|+.|++++|++..++ ..+..+++|+.|++.+
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 777777666666554 3466666666666643
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=2.3e-23 Score=213.84 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=115.7
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 279 (471)
.+++.|+++++....+ .+..+..+++|++|++++|.+..++ ..|.++++|++|+|++|.++.+|. .++.+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI--QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceE--CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 3455555555543322 1334555555555555555555433 445555555555555555555543 25555555555
Q ss_pred EeeCCCCCCcch-hhhCCCCCcEEecCCC-CCCcCcc-ccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCC
Q 012082 280 DLHANRLKTLPA-TFGNLINLMNLDLGSN-EFTHLPD-TIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 280 ~L~~~~l~~lp~-~l~~l~~L~~L~l~~~-~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+|++|.+..+|. .+.++++|++|++++| .+..++. .+..+++|++|++++|.+..+| .+..+++|+.|++++|.++
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCc
Confidence 555555555443 4555555555555553 3334432 3455555555555555555554 3455555555555555555
Q ss_pred cc-hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchhh-hcCCCCCcEEEccCC
Q 012082 357 AL-PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITEN-LCFAVSLKKLNVGNN 422 (471)
Q Consensus 357 ~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~~~~L~~L~L~~n 422 (471)
.+ +..+..+++|+.|++++|.++.+ +..+..+++|+.|+|++|.++.++.. +..+++|+.|+|++|
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 44 33455555555555555555553 34455555555555555555554432 344555555555555
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.1e-23 Score=202.64 Aligned_cols=247 Identities=28% Similarity=0.372 Sum_probs=187.3
Q ss_pred EEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEee
Q 012082 205 VVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLH 282 (471)
Q Consensus 205 ~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~ 282 (471)
+.++..+... ..+|.. ..++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 14 ~~~~c~~~~l---~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGL---QAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCC---SSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCc---ccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 4555555433 334432 2468899999999988876 4688889999999999988877 6778889999999999
Q ss_pred CCC-CCCc-chhhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcc
Q 012082 283 ANR-LKTL-PATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRAL 358 (471)
Q Consensus 283 ~~~-l~~l-p~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l 358 (471)
+|. +..+ |..+..+++|++|++++|.++.+ +..+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 996 8777 66788899999999999988876 56678889999999999988877644 77889999999999998887
Q ss_pred hh-hhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhccC
Q 012082 359 PE-AIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIGN 435 (471)
Q Consensus 359 ~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~ 435 (471)
+. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++.++. .+..+++|+.|++++|......-..++
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~-- 246 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-- 246 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--
Confidence 76 477889999999999998884 7788889999999999999887764 477888999999988843211111111
Q ss_pred CCCccEEEeecCCCC-cCchhhhc
Q 012082 436 LEMLEQLDISDDQIR-ILPDSFRL 458 (471)
Q Consensus 436 l~~L~~L~L~~n~l~-~lp~~l~~ 458 (471)
...++.+..+.+.+. ..|..+.+
T Consensus 247 ~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHHHHCCSEECCCBEEESGGGTT
T ss_pred HHHHHhcccccCccccCCchHhCC
Confidence 122444445556665 55655543
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=3.6e-23 Score=219.35 Aligned_cols=229 Identities=31% Similarity=0.344 Sum_probs=198.5
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDL 279 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 279 (471)
...+++.|+++++.... +|. .+++|++|++++|.+..+|. .+.+|++|++++|.++.+|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS---LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC---CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc---CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEE
Confidence 35789999999986554 444 67899999999999999877 678899999999999999874 5899999
Q ss_pred EeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcch
Q 012082 280 DLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALP 359 (471)
Q Consensus 280 ~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~ 359 (471)
++++|.++.+|. .+.+|+.|++++|.++.+| ..+++|+.|++++|.+..+|.. +++|+.|++++|.++.+|
T Consensus 147 ~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~ 217 (622)
T 3g06_A 147 SVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP 217 (622)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC
T ss_pred ECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccC
Confidence 999999998875 3568999999999999998 5678999999999999988854 478999999999999887
Q ss_pred hhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCc
Q 012082 360 EAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEML 439 (471)
Q Consensus 360 ~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L 439 (471)
. .+++|+.|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+.|+|++| .+..+|.++..+++|
T Consensus 218 ~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N--~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 218 A---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN--QLTRLPESLIHLSSE 286 (622)
T ss_dssp C---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS--CCCSCCGGGGGSCTT
T ss_pred C---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC--CCCcCCHHHhhcccc
Confidence 5 3588999999999999988 567899999999999998887 6789999999999 566999999999999
Q ss_pred cEEEeecCCCC-cCchhhhcCC
Q 012082 440 EQLDISDDQIR-ILPDSFRLLS 460 (471)
Q Consensus 440 ~~L~L~~n~l~-~lp~~l~~L~ 460 (471)
+.|+|++|.++ ..|..+..++
T Consensus 287 ~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSCCCCHHHHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHHhcc
Confidence 99999999998 4455555443
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=3.9e-23 Score=198.90 Aligned_cols=217 Identities=29% Similarity=0.396 Sum_probs=192.3
Q ss_pred ccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCC
Q 012082 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSN 307 (471)
Q Consensus 230 L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 307 (471)
-++++.+++.+..+|..+ .++|++|++++|.++.++ ..++.+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378899999999888654 468999999999999886 5689999999999999999977 678999999999999999
Q ss_pred C-CCcC-ccccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCCCCch
Q 012082 308 E-FTHL-PDTIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLPT 383 (471)
Q Consensus 308 ~-l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~ 383 (471)
. +..+ +..+..+++|++|++++|.+..+ +..+.++++|++|++++|.++.++. .++.+++|+.|++++|.++.++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 8877 67889999999999999999877 5668899999999999999988875 47899999999999999999765
Q ss_pred -hccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCccc-hhccCCCCccEEEeecCCCC
Q 012082 384 -TIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALP-RSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 384 -~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~L~~n~l~ 450 (471)
.+..+++|+.|++++|.+..+ +..+..+++|+.|++++| .+..++ ..+..+++|++|++++|.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN--NLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--CCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC--cCCcCCHHHcccCcccCEEeccCCCcc
Confidence 588999999999999999976 677888999999999999 455666 45899999999999999887
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=9.1e-24 Score=222.75 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=192.3
Q ss_pred cchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCC
Q 012082 220 LPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINL 299 (471)
Q Consensus 220 l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L 299 (471)
.+..+..+++|++|++++|.+..+|..+..+ +|++|++++|.+..+|. ..+++|++|++++|.+...... ..+++|
T Consensus 274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L 349 (570)
T 2z63_A 274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSL 349 (570)
T ss_dssp STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCC
Confidence 4556677889999999999888888888888 89999999998887776 4788888888888876643322 678888
Q ss_pred cEEecCCCCCCcC---ccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh--hhCCCCCCcEEEee
Q 012082 300 MNLDLGSNEFTHL---PDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE--AIGKLECLEILTLH 374 (471)
Q Consensus 300 ~~L~l~~~~l~~l---~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~ 374 (471)
++|++++|.++.. +..+..+++|++|++++|.+..++..+..+++|+.|++++|.+...+. .+..+++|+.|+++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 8888888887755 567778888888888888887777668888888888888888765533 56788888888888
Q ss_pred cCCCCC-CchhccCCCCCcEEEeeCCCCC--cchhhhcCCCCCcEEEccCCcCCCCcc-chhccCCCCccEEEeecCCCC
Q 012082 375 YNRIKG-LPTTIGNLTKLKELDVSFNELE--SITENLCFAVSLKKLNVGNNFADLRAL-PRSIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 375 ~~~l~~-l~~~l~~l~~L~~L~L~~n~l~--~l~~~l~~~~~L~~L~L~~n~~~l~~l-p~~l~~l~~L~~L~L~~n~l~ 450 (471)
+|.+.. .|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++| .+..+ |.+++.+++|++|+|++|+++
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--QLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC--ccccCChhhhhcccCCCEEeCCCCcCC
Confidence 888776 5567788888888888888876 46777778888888888888 44455 677888888888888888888
Q ss_pred cCc-hhhhcCCCCcEEEccC
Q 012082 451 ILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 451 ~lp-~~l~~L~~L~~L~l~~ 469 (471)
.+| ..+..+++|+.|++.+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCS
T ss_pred CCCHHHhhcccCCcEEEecC
Confidence 665 4578888888888764
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=5e-23 Score=210.62 Aligned_cols=218 Identities=26% Similarity=0.424 Sum_probs=145.9
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 279 (471)
..++.|+++++....+. +..+..+++|++|++++|.+..++ ..|.++++|++|+|++|.++.+|. .|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 45667777766544332 345666777777777777776653 556777777777777777776654 46677777777
Q ss_pred EeeCCCCCCcch-hhhCCCCCcEEecCCC-CCCcCcc-ccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCC
Q 012082 280 DLHANRLKTLPA-TFGNLINLMNLDLGSN-EFTHLPD-TIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 280 ~L~~~~l~~lp~-~l~~l~~L~~L~l~~~-~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
++++|.+..+|. .+.++++|++|++++| .+..++. .+..+++|++|++++|.+..+| .+..+++|+.|++++|.++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccC
Confidence 777777776654 5667777777777764 4444443 4566777777777777777666 3666777777777777776
Q ss_pred cc-hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCC
Q 012082 357 AL-PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNN 422 (471)
Q Consensus 357 ~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n 422 (471)
.+ +..+..+++|+.|++++|.++.+ +..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 55 44566777777777777777764 3556677777777777777776654 3455677777777776
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.3e-22 Score=208.11 Aligned_cols=242 Identities=27% Similarity=0.362 Sum_probs=144.9
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEe
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDL 281 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 281 (471)
..++.|+++++.... +| .++.+++|++|++++|.+..+|..+ .+|++|++++|.++.+| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~---lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK---LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC---Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEEC
Confidence 456666666654432 34 3666677777777777666665433 36777777777766666 4667777777777
Q ss_pred eCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhh
Q 012082 282 HANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEA 361 (471)
Q Consensus 282 ~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 361 (471)
++|.++.+|... .+|++|++++|.++.+|. ++.+++|++|++++|.+..+|.. +++|+.|++++|.++.+|..
T Consensus 203 ~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 203 DNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC
T ss_pred CCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc
Confidence 777776665432 467777777777776663 67777777777777777766642 35677777777776665542
Q ss_pred hCCCCCCcEEEeecCCCCCCchh---c-------------cCC-CCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcC
Q 012082 362 IGKLECLEILTLHYNRIKGLPTT---I-------------GNL-TKLKELDVSFNELESITENLCFAVSLKKLNVGNNFA 424 (471)
Q Consensus 362 l~~l~~L~~L~l~~~~l~~l~~~---l-------------~~l-~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~ 424 (471)
+++|+.|++++|.+++++.. + ..+ ++|+.|++++|.+..++.. +++|+.|++++|
T Consensus 276 ---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-- 347 (454)
T 1jl5_A 276 ---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-- 347 (454)
T ss_dssp ---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS--
T ss_pred ---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCC--
Confidence 25666666666666553211 1 111 3566666666666555432 466777777666
Q ss_pred CCCccchhccCCCCccEEEeecCCCCc---CchhhhcC-------------CCCcEEEccC
Q 012082 425 DLRALPRSIGNLEMLEQLDISDDQIRI---LPDSFRLL-------------SKLRVFRAMR 469 (471)
Q Consensus 425 ~l~~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~L-------------~~L~~L~l~~ 469 (471)
.+..+|. .+++|++|++++|+++. +|.+++.+ ++|+.|++.+
T Consensus 348 ~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~ 405 (454)
T 1jl5_A 348 HLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405 (454)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------
T ss_pred ccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCC
Confidence 3445665 35677777777777764 45566666 6677766653
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1e-24 Score=213.00 Aligned_cols=217 Identities=20% Similarity=0.256 Sum_probs=183.5
Q ss_pred ccEEEeeCCCCCC--Cchhhc-------CCCCccEEEeecCCCC-Ccchhh--cCCCCCcEEEeeCCCCCCcchhhhCC-
Q 012082 230 VTELNLSENRIMA--LPSSIA-------GIKTLKKLDIHSNQLI-NLPDSF--GDLINLIDLDLHANRLKTLPATFGNL- 296 (471)
Q Consensus 230 L~~L~L~~~~~~~--l~~~i~-------~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~l~~lp~~l~~l- 296 (471)
|++|++++|.+.. +|..+. ++++|++|++++|.++ .+|..+ +.+++|++|++++|+++.+|..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 7888888887753 565555 7899999999999988 577765 89999999999999999888777776
Q ss_pred ----CCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCC---ccccc--CCCCCCcEEEccCCCCCcchh----hh
Q 012082 297 ----INLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELED---LPYTI--GNCSSLTELRLDFNQLRALPE----AI 362 (471)
Q Consensus 297 ----~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~---l~~~l--~~l~~L~~L~l~~~~l~~l~~----~l 362 (471)
++|++|++++|.++.++ ..++.+++|++|++++|.+.. ++..+ ..+++|++|++++|.++.++. .+
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 89999999999999776 788999999999999998764 34444 789999999999999985542 23
Q ss_pred CCCCCCcEEEeecCCCCCCc--hhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCcc
Q 012082 363 GKLECLEILTLHYNRIKGLP--TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLE 440 (471)
Q Consensus 363 ~~l~~L~~L~l~~~~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~ 440 (471)
..+++|+.|++++|.+++.+ ..+..+++|+.|++++|.++.+|..+. ++|++|++++| .+..+|. +..+++|+
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N--~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN--RLDRNPS-PDELPQVG 299 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS--CCCSCCC-TTTSCEEE
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC--CCCCChh-HhhCCCCC
Confidence 57899999999999999854 556678999999999999999888765 89999999999 5677776 88999999
Q ss_pred EEEeecCCCCc
Q 012082 441 QLDISDDQIRI 451 (471)
Q Consensus 441 ~L~L~~n~l~~ 451 (471)
+|++++|+++.
T Consensus 300 ~L~L~~N~l~~ 310 (312)
T 1wwl_A 300 NLSLKGNPFLD 310 (312)
T ss_dssp EEECTTCTTTC
T ss_pred EEeccCCCCCC
Confidence 99999999875
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=8.6e-23 Score=209.55 Aligned_cols=238 Identities=31% Similarity=0.374 Sum_probs=123.5
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEe
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDL 281 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L 281 (471)
..++.|+++++....+..+ .++|++|++++|.+..+| .++++++|++|++++|.++.+|..+ .+|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEEC
T ss_pred CCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEEC
Confidence 3455555555433332111 145666666666665555 3566666666666666655555432 35666666
Q ss_pred eCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhh
Q 012082 282 HANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEA 361 (471)
Q Consensus 282 ~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 361 (471)
++|.++.+| .++++++|++|++++|.++.+|... .+|++|++++|.+..+| .++.+++|+.|++++|.++.+|..
T Consensus 181 ~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~ 255 (454)
T 1jl5_A 181 GNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL 255 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC
T ss_pred cCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc
Confidence 666665555 4556666666666666555554322 35666666666655555 255566666666666665555432
Q ss_pred hCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhh---h-------------cCC-CCCcEEEccCCcC
Q 012082 362 IGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITEN---L-------------CFA-VSLKKLNVGNNFA 424 (471)
Q Consensus 362 l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~---l-------------~~~-~~L~~L~L~~n~~ 424 (471)
+++|+.|++++|.++++|.. +++|+.|++++|.++.++.. + ... ++|+.|++++|
T Consensus 256 ---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-- 327 (454)
T 1jl5_A 256 ---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-- 327 (454)
T ss_dssp ---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS--
T ss_pred ---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC--
Confidence 24566666666665554432 23444444444444432110 0 011 34555555554
Q ss_pred CCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEcc
Q 012082 425 DLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 425 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~ 468 (471)
.+..+|.. +++|++|++++|+++.+|. .+++|+.|++.
T Consensus 328 ~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 328 KLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred cccccccc---CCcCCEEECCCCccccccc---hhhhccEEECC
Confidence 23334432 3556666666666665555 35555555554
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-23 Score=216.93 Aligned_cols=221 Identities=19% Similarity=0.275 Sum_probs=192.2
Q ss_pred CCCCCchhhcCCC----CccEEEeecCCCCCc-chhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCc
Q 012082 239 RIMALPSSIAGIK----TLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLP 313 (471)
Q Consensus 239 ~~~~l~~~i~~l~----~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~ 313 (471)
....+|..+..+. +|++|+|++|.++.+ |..|+.+++|++|+|++|.++..++ +..+++|++|++++|.++.+|
T Consensus 18 ~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 96 (487)
T 3oja_A 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL 96 (487)
T ss_dssp CTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE
T ss_pred chhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC
Confidence 3334565555444 899999999999977 4689999999999999999986655 999999999999999998776
Q ss_pred cccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCC-Cchhcc-CCCC
Q 012082 314 DTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKG-LPTTIG-NLTK 390 (471)
Q Consensus 314 ~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~-l~~~l~-~l~~ 390 (471)
. .++|++|++++|.+..++.. .+++|+.|++++|.++.+ |..++.+++|+.|++++|.+++ .|..+. .+++
T Consensus 97 ~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 97 V----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp E----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred C----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 4 38999999999999988753 578999999999999877 4467889999999999999998 456665 7999
Q ss_pred CcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEccC
Q 012082 391 LKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 391 L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~~ 469 (471)
|+.|+|++|.++.++. ...+++|+.|+|++| .+..+|..++.+++|+.|+|++|+++.+|..+..+++|+.|++.+
T Consensus 171 L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCEEECTTSCCCEEEC-CCCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred ccEEecCCCccccccc-cccCCCCCEEECCCC--CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCC
Confidence 9999999999998865 346899999999999 667888889999999999999999999999999999999999875
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=4.8e-24 Score=208.68 Aligned_cols=230 Identities=18% Similarity=0.255 Sum_probs=196.0
Q ss_pred ccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCC
Q 012082 230 VTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSN 307 (471)
Q Consensus 230 L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 307 (471)
++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 444455555554433 34566779999999999999875 689999999999999999987665 899999999999999
Q ss_pred CCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCCCC-chhc
Q 012082 308 EFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGL-PTTI 385 (471)
Q Consensus 308 ~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l 385 (471)
.++.++. .++|++|++++|.+..++.. .+++|+.|++++|.++.++. .++.+++|+.|++++|.++.+ +..+
T Consensus 91 ~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 91 YVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 9987663 48999999999999887643 47899999999999988765 677899999999999999985 3444
Q ss_pred -cCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCCcCchhhhcCCCCcE
Q 012082 386 -GNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIRILPDSFRLLSKLRV 464 (471)
Q Consensus 386 -~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~ 464 (471)
..+++|+.|++++|.++.++.. ..+++|+.|++++| .+..+|..+..+++|+.|++++|+++.+|..+..+++|+.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N--~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN--KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS--CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred hhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC--cCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 5789999999999999988654 45899999999999 6678888899999999999999999999999999999999
Q ss_pred EEccC
Q 012082 465 FRAMR 469 (471)
Q Consensus 465 L~l~~ 469 (471)
|++.+
T Consensus 242 L~l~~ 246 (317)
T 3o53_A 242 FDLRG 246 (317)
T ss_dssp EECTT
T ss_pred EEccC
Confidence 99875
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.90 E-value=1.2e-22 Score=219.07 Aligned_cols=265 Identities=25% Similarity=0.343 Sum_probs=195.8
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 279 (471)
.+++.|+++++....+. +..+.++++|++|++++|.+..+ |..+.++++|++|++++|.++.+|. .|+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcC--HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 57888999887655432 34578888999999999888875 5678888999999999998888876 58889999999
Q ss_pred EeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCCCCCcccc---cCCCCCCcEEEccCCC
Q 012082 280 DLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPYT---IGNCSSLTELRLDFNQ 354 (471)
Q Consensus 280 ~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~---l~~l~~L~~L~l~~~~ 354 (471)
++++|.+..+| ..+.++++|++|++++|.++.. +..++.+++|++|++++|.+..++.. ...+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 99999888775 5688899999999999988755 55678889999999999888876532 3356889999999888
Q ss_pred CCcchh-hhCCC---------------------------CCCcEEEeecCCCCC-CchhccCCCC--CcEEEeeCCCCCc
Q 012082 355 LRALPE-AIGKL---------------------------ECLEILTLHYNRIKG-LPTTIGNLTK--LKELDVSFNELES 403 (471)
Q Consensus 355 l~~l~~-~l~~l---------------------------~~L~~L~l~~~~l~~-l~~~l~~l~~--L~~L~L~~n~l~~ 403 (471)
++.++. .+..+ ++|+.|++++|.+.+ .|.++..++. |+.|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 865432 23332 456777777777666 3455655543 8888888888776
Q ss_pred ch-hhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC------cCch----hhhcCCCCcEEEccC
Q 012082 404 IT-ENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR------ILPD----SFRLLSKLRVFRAMR 469 (471)
Q Consensus 404 l~-~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~------~lp~----~l~~L~~L~~L~l~~ 469 (471)
++ ..+..+++|++|++++|... ...|.+++.+++|+.|++++|... .+|. .+..+++|+.|++.+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQ-HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBS-EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred cCcccccCcccccEeeCCCCccC-ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 54 45677788888888877322 233556778888888888765333 3332 677888888888764
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.3e-22 Score=197.61 Aligned_cols=192 Identities=21% Similarity=0.370 Sum_probs=171.1
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEe
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLD 303 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 303 (471)
...+++|++|++++|.+..++ .+..+++|++|++++|.+..++. ++.+++|++|++++|.++.++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 345789999999999998886 58889999999999999998877 899999999999999999875 688999999999
Q ss_pred cCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCch
Q 012082 304 LGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPT 383 (471)
Q Consensus 304 l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~ 383 (471)
+++|.++.++. +..+++|++|++++|.+..++. +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++++.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 99999998865 8899999999999999988875 8889999999999999988877 8899999999999999998765
Q ss_pred hccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCc
Q 012082 384 TIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 384 ~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~ 423 (471)
+..+++|+.|++++|.+..++. +..+++|+.|++++|.
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred -hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 7889999999999999988874 7888999999999883
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3.1e-22 Score=195.00 Aligned_cols=195 Identities=23% Similarity=0.367 Sum_probs=173.4
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
..+++.|++.++....+ + .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++ .++.+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 45789999998865543 3 47789999999999999999877 999999999999999999886 588999999999
Q ss_pred eeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh
Q 012082 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE 360 (471)
Q Consensus 281 L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~ 360 (471)
+++|.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..++. +..+++|+.|++++|.++.++.
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh
Confidence 99999998865 8999999999999999998876 8899999999999999998876 8899999999999999998876
Q ss_pred hhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchh
Q 012082 361 AIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITE 406 (471)
Q Consensus 361 ~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 406 (471)
+..+++|+.|++++|.+++++. +..+++|+.|++++|.++..+.
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred -hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence 7889999999999999999874 8899999999999998876554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.8e-22 Score=191.92 Aligned_cols=194 Identities=27% Similarity=0.366 Sum_probs=104.9
Q ss_pred CccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecC
Q 012082 229 DVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLG 305 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~ 305 (471)
+|++|++++|.+..++. .+.++++|++|++++|.+..++. .++.+++|++|++++|.++.++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666655443 45566666666666666655532 4556666666666666665443 345566666666666
Q ss_pred CCCCCcCcc-ccCCCCCCCEEEeeCCCCCC--cccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCc----EEEeecCC
Q 012082 306 SNEFTHLPD-TIGCLTSLKTLNVETNELED--LPYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLE----ILTLHYNR 377 (471)
Q Consensus 306 ~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~----~L~l~~~~ 377 (471)
+|.+..++. .++.+++|++|++++|.+.. +|..+..+++|+.|++++|.++.++. .+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 666555433 45555666666666665554 34555555566666666655554432 222222332 45555555
Q ss_pred CCCCchhccCCCCCcEEEeeCCCCCcchhh-hcCCCCCcEEEccCC
Q 012082 378 IKGLPTTIGNLTKLKELDVSFNELESITEN-LCFAVSLKKLNVGNN 422 (471)
Q Consensus 378 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-l~~~~~L~~L~L~~n 422 (471)
++.++.......+|+.|++++|.++.++.. +..+++|++|++++|
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 555444333344555555555555544432 244555555555555
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=216.52 Aligned_cols=261 Identities=23% Similarity=0.329 Sum_probs=164.1
Q ss_pred cCCCcEEEEecCCCCCccccc-chhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCC-cchh--hcCCC
Q 012082 200 AKTGAVVLDLRGKLTDQIEWL-PVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLIN-LPDS--FGDLI 274 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l-~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~-lp~~--i~~l~ 274 (471)
...+++.|+++++.. ...+ +..+.++++|++|+|++|.+..+ |..|.++++|++|+|++|.+.. +|.. +++++
T Consensus 46 ~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 46 FLEQLQLLELGSQYT--PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp SCCSCSEEEECTTCC--CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred ccccCeEEeCCCCCC--ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 344556666655422 1112 34455566666666666655543 4555666666666666665553 3332 55566
Q ss_pred CCcEEEeeCCCCCCc--chhhhCCCCCcEEecCCCCCCc---------------------------CccccCCCCC----
Q 012082 275 NLIDLDLHANRLKTL--PATFGNLINLMNLDLGSNEFTH---------------------------LPDTIGCLTS---- 321 (471)
Q Consensus 275 ~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~l~~~~l~~---------------------------l~~~l~~l~~---- 321 (471)
+|++|++++|.+..+ +..++++++|++|++++|.++. .|..++.+.+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 666666666655543 2345556666666665554432 1222333333
Q ss_pred --CCEEEeeCCCCCC-cccc------------------------------------cCC--CCCCcEEEccCCCCCcc-h
Q 012082 322 --LKTLNVETNELED-LPYT------------------------------------IGN--CSSLTELRLDFNQLRAL-P 359 (471)
Q Consensus 322 --L~~L~l~~~~l~~-l~~~------------------------------------l~~--l~~L~~L~l~~~~l~~l-~ 359 (471)
|+.|++++|.+.. .+.. +.. .++|+.|++++|.+..+ +
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 8888888775431 1111 111 25788888888888765 4
Q ss_pred hhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCccch-hccCC
Q 012082 360 EAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALPR-SIGNL 436 (471)
Q Consensus 360 ~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l 436 (471)
..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++| .+..++. .+..+
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N--~i~~~~~~~~~~l 361 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN--HIAIIQDQTFKFL 361 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC--CCCCCCSSCSCSC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC--CCCccChhhhcCC
Confidence 4577888899999998888884 56788888899999998888765 557778888999999888 3445543 57778
Q ss_pred CCccEEEeecCCCCcCchhhhcCCCCcEEEcc
Q 012082 437 EMLEQLDISDDQIRILPDSFRLLSKLRVFRAM 468 (471)
Q Consensus 437 ~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l~ 468 (471)
++|++|+|++|.++.++. +++|+.|.+.
T Consensus 362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~ 389 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF----IPSIPDIFLS 389 (844)
T ss_dssp CCCCEEEEETCCSCCCSS----CCSCSEEEEE
T ss_pred CCCCEEECCCCCCCcccC----CCCcchhccC
Confidence 888888888888886554 6666666654
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.5e-22 Score=210.23 Aligned_cols=104 Identities=27% Similarity=0.328 Sum_probs=73.4
Q ss_pred CCCCCcEEEeecCCCCC--CchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCccc-hhccCCCCc
Q 012082 364 KLECLEILTLHYNRIKG--LPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALP-RSIGNLEML 439 (471)
Q Consensus 364 ~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L 439 (471)
.+++|+.|++++|.+.. .|..+..+++|+.|+|++|.++.+ +..+..+++|+.|+|++| .+..++ ..+..+++|
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN--NFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS--CCCBCCCGGGTTCTTC
T ss_pred cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC--cCCCCChhHHhCCCCC
Confidence 34455555555554332 455677788888888888888866 456777888888888888 455553 457788888
Q ss_pred cEEEeecCCCCcC-chhhhcC-CCCcEEEccC
Q 012082 440 EQLDISDDQIRIL-PDSFRLL-SKLRVFRAMR 469 (471)
Q Consensus 440 ~~L~L~~n~l~~l-p~~l~~L-~~L~~L~l~~ 469 (471)
+.|+|++|+++.+ |..+..+ ++|+.|++.+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 8888888888855 4567777 5788888764
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.3e-21 Score=188.82 Aligned_cols=214 Identities=26% Similarity=0.295 Sum_probs=184.3
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEE
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNL 302 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L 302 (471)
++++++++.++++++.+..+|..+. +++++|++++|.++.+ +..+..+++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 6778899999999999999987665 6899999999999977 56799999999999999999988765 789999999
Q ss_pred ecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCC
Q 012082 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKG 380 (471)
Q Consensus 303 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~ 380 (471)
++++|.++.+|..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|+++.
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999999999999999999999999999999886 5688999999999999999888764 5789999999999999999
Q ss_pred Cch-hccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCC----CccchhccCCCCcc
Q 012082 381 LPT-TIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADL----RALPRSIGNLEMLE 440 (471)
Q Consensus 381 l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l----~~lp~~l~~l~~L~ 440 (471)
+|. .+..+++|+.|+|++|.++.+|..+...++|+.|.|++|.... ..+..|+...+...
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~~ 227 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGGB
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhCcccc
Confidence 875 4578999999999999999999998888999999999984322 22445555544433
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.5e-21 Score=188.41 Aligned_cols=197 Identities=28% Similarity=0.335 Sum_probs=168.4
Q ss_pred cCCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcE
Q 012082 200 AKTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLID 278 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 278 (471)
....++.+++.++... .+|..+ .+.+++|++++|.+..+ +..+.++++|++|++++|.++.++.. +.+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~---~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT---ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCS---SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred ccCCccEEECCCCCCC---cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 4567788888876544 445444 36899999999999876 46789999999999999999988764 78999999
Q ss_pred EEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCC
Q 012082 279 LDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 279 L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~ 356 (471)
|++++|.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++.. +..+++|+.|++++|.++
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999999999988999999999999999999886 5688999999999999999988754 568899999999999999
Q ss_pred cchhh-hCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCC
Q 012082 357 ALPEA-IGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 357 ~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 402 (471)
.+|.. +..+++|+.|++++|.++.+|..+..+++|+.|+|++|.+.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 88875 46799999999999999999988888899999999999875
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2e-23 Score=209.83 Aligned_cols=236 Identities=20% Similarity=0.242 Sum_probs=183.5
Q ss_pred cccccchhcCCCCCccEEEeeCCCCCC-----CchhhcCCCCccEEEeecCCCCC----cchhh-------cCCCCCcEE
Q 012082 216 QIEWLPVSIGKLKDVTELNLSENRIMA-----LPSSIAGIKTLKKLDIHSNQLIN----LPDSF-------GDLINLIDL 279 (471)
Q Consensus 216 ~~~~l~~~~~~l~~L~~L~L~~~~~~~-----l~~~i~~l~~L~~L~L~~~~i~~----lp~~i-------~~l~~L~~L 279 (471)
.+..++..+..+++|++|++++|.+.. ++..+.++++|++|+|++|.+.. +|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344566677788889999999988774 33457788899999999876653 34433 788999999
Q ss_pred EeeCCCCCC-----cchhhhCCCCCcEEecCCCCCC-----cCccccCCC---------CCCCEEEeeCCCCC--Ccc--
Q 012082 280 DLHANRLKT-----LPATFGNLINLMNLDLGSNEFT-----HLPDTIGCL---------TSLKTLNVETNELE--DLP-- 336 (471)
Q Consensus 280 ~L~~~~l~~-----lp~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l---------~~L~~L~l~~~~l~--~l~-- 336 (471)
+|++|.+.. +|..+..+++|++|++++|.++ .++..+..+ ++|++|++++|.+. .++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999998875 6778888999999999999886 233444444 88999999999886 334
Q ss_pred -cccCCCCCCcEEEccCCCCC------cchhhhCCCCCCcEEEeecCCCC-----CCchhccCCCCCcEEEeeCCCCCc-
Q 012082 337 -YTIGNCSSLTELRLDFNQLR------ALPEAIGKLECLEILTLHYNRIK-----GLPTTIGNLTKLKELDVSFNELES- 403 (471)
Q Consensus 337 -~~l~~l~~L~~L~l~~~~l~------~l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~L~~n~l~~- 403 (471)
..+..+++|++|++++|.++ -++..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~ 259 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence 46678889999999999887 23336788899999999999984 377888889999999999999874
Q ss_pred ----chhhhc--CCCCCcEEEccCCcCCCCc-----cchhc-cCCCCccEEEeecCCCCcCc
Q 012082 404 ----ITENLC--FAVSLKKLNVGNNFADLRA-----LPRSI-GNLEMLEQLDISDDQIRILP 453 (471)
Q Consensus 404 ----l~~~l~--~~~~L~~L~L~~n~~~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~lp 453 (471)
++..+. .+++|++|+|++| .+.. +|..+ .++++|++|++++|+++...
T Consensus 260 ~~~~l~~~l~~~~~~~L~~L~L~~n--~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 260 GAAAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHTCSSCCCCEEECCSS--CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hHHHHHHHHhhccCCCeEEEECcCC--cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 355663 3889999999998 4445 77777 56899999999999988443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.9e-21 Score=182.24 Aligned_cols=195 Identities=35% Similarity=0.512 Sum_probs=153.8
Q ss_pred CCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEec
Q 012082 227 LKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDL 304 (471)
Q Consensus 227 l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l 304 (471)
....++++++++.+..+|..+. .+|++|++++|.+..++. .|+++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3467788888888888876554 578888888888887764 688888888888888888887765 577888888888
Q ss_pred CCCCCCcCcc-ccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCCC
Q 012082 305 GSNEFTHLPD-TIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGL 381 (471)
Q Consensus 305 ~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l 381 (471)
++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 8888887764 45778888888888888887754 457888888888888888877654 67788888888888888886
Q ss_pred ch-hccCCCCCcEEEeeCCCCCcchhh-hcCCCCCcEEEccCCc
Q 012082 382 PT-TIGNLTKLKELDVSFNELESITEN-LCFAVSLKKLNVGNNF 423 (471)
Q Consensus 382 ~~-~l~~l~~L~~L~L~~n~l~~l~~~-l~~~~~L~~L~L~~n~ 423 (471)
+. .+..+++|+.|++++|.++.++.. +..+++|+.|++++|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 54 577788888888888888877653 5667888888888874
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.9e-21 Score=184.90 Aligned_cols=215 Identities=27% Similarity=0.393 Sum_probs=185.3
Q ss_pred EEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCC
Q 012082 232 ELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEF 309 (471)
Q Consensus 232 ~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l 309 (471)
..+..+..+..+|..+. ++|++|++++|.++.++. .++++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45666667777887664 589999999999998865 78999999999999999997765 789999999999999999
Q ss_pred CcCc-cccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCCCc--chhhhCCCCCCcEEEeecCCCCCCc-hh
Q 012082 310 THLP-DTIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQLRA--LPEAIGKLECLEILTLHYNRIKGLP-TT 384 (471)
Q Consensus 310 ~~l~-~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~l~~l~-~~ 384 (471)
+.++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.++. +|..++.+++|+.|++++|.++.++ ..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 9775 678999999999999999988765 68899999999999999986 6888999999999999999999854 45
Q ss_pred ccCCCCCc----EEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchh-ccCCCCccEEEeecCCCC
Q 012082 385 IGNLTKLK----ELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRS-IGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 385 l~~l~~L~----~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~-l~~l~~L~~L~L~~n~l~ 450 (471)
+..+++|+ .|++++|.+..++.......+|+.|++++| .+..+|.. +..+++|+.|+|++|.+.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN--QLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS--CCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC--ceeecCHhHhcccccccEEEccCCccc
Confidence 55555555 899999999988877777779999999999 46677665 588999999999999887
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=5.7e-21 Score=203.42 Aligned_cols=131 Identities=23% Similarity=0.327 Sum_probs=114.1
Q ss_pred CCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEE
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDL 279 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L 279 (471)
..++.|+++++....+. +..+..+++|++|+|++|.+..++. .|.++++|++|+|++|.++.+|. .|+++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 57899999998665432 3578899999999999999998854 68999999999999999998874 58999999999
Q ss_pred EeeCCCCCCcch-hhhCCCCCcEEecCCCCCCc--CccccCCCCCCCEEEeeCCCCCC
Q 012082 280 DLHANRLKTLPA-TFGNLINLMNLDLGSNEFTH--LPDTIGCLTSLKTLNVETNELED 334 (471)
Q Consensus 280 ~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~l~~ 334 (471)
++++|+++.+|. .|+++++|++|++++|.++. +|..++.+++|++|++++|.+..
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 999999998876 58999999999999999874 57888999999999998886653
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=8.4e-23 Score=205.26 Aligned_cols=229 Identities=17% Similarity=0.194 Sum_probs=189.6
Q ss_pred CCCCCchhhcCCCCccEEEeecCCCCC-----cchhhcCCCCCcEEEeeCCCCC----Ccchhh-------hCCCCCcEE
Q 012082 239 RIMALPSSIAGIKTLKKLDIHSNQLIN-----LPDSFGDLINLIDLDLHANRLK----TLPATF-------GNLINLMNL 302 (471)
Q Consensus 239 ~~~~l~~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~----~lp~~l-------~~l~~L~~L 302 (471)
.+..++..+..+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344577788889999999999998884 4455789999999999998665 335444 789999999
Q ss_pred ecCCCCCCc-----CccccCCCCCCCEEEeeCCCCCC-----cccccCCC---------CCCcEEEccCCCCC--cch--
Q 012082 303 DLGSNEFTH-----LPDTIGCLTSLKTLNVETNELED-----LPYTIGNC---------SSLTELRLDFNQLR--ALP-- 359 (471)
Q Consensus 303 ~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l---------~~L~~L~l~~~~l~--~l~-- 359 (471)
++++|.++. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.++ .++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999999885 67888999999999999999863 33344444 89999999999996 444
Q ss_pred -hhhCCCCCCcEEEeecCCCCC------CchhccCCCCCcEEEeeCCCC-----CcchhhhcCCCCCcEEEccCCcCCCC
Q 012082 360 -EAIGKLECLEILTLHYNRIKG------LPTTIGNLTKLKELDVSFNEL-----ESITENLCFAVSLKKLNVGNNFADLR 427 (471)
Q Consensus 360 -~~l~~l~~L~~L~l~~~~l~~------l~~~l~~l~~L~~L~L~~n~l-----~~l~~~l~~~~~L~~L~L~~n~~~l~ 427 (471)
..+..+++|++|++++|+++. .+..+..+++|+.|+|++|.+ ..++..+..+++|++|+|++|. +.
T Consensus 180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~--i~ 257 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL--LS 257 (386)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC--CC
T ss_pred HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC--Cc
Confidence 467789999999999999983 333888999999999999999 4577888899999999999994 33
Q ss_pred c-----cchhc--cCCCCccEEEeecCCCCc-----Cchhh-hcCCCCcEEEccC
Q 012082 428 A-----LPRSI--GNLEMLEQLDISDDQIRI-----LPDSF-RLLSKLRVFRAMR 469 (471)
Q Consensus 428 ~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~L~~L~~L~l~~ 469 (471)
. ++.++ +.+++|++|+|++|.++. +|..+ .++++|+.|++.+
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 3 46666 449999999999999997 88888 6799999999875
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=178.65 Aligned_cols=195 Identities=35% Similarity=0.541 Sum_probs=171.9
Q ss_pred CccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCCCcCcccc-CCCCCCCEEEeeC
Q 012082 252 TLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPDTI-GCLTSLKTLNVET 329 (471)
Q Consensus 252 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~l~~ 329 (471)
..++++++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++|.++.++..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 57899999999999987664 689999999999998875 7999999999999999999887664 7899999999999
Q ss_pred CCCCCccc-ccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCCCCch-hccCCCCCcEEEeeCCCCCcchh
Q 012082 330 NELEDLPY-TIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFNELESITE 406 (471)
Q Consensus 330 ~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~ 406 (471)
|.+..++. .+..+++|+.|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99998875 45789999999999999988765 46899999999999999999775 47899999999999999998875
Q ss_pred -hhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEeecCCCC
Q 012082 407 -NLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIR 450 (471)
Q Consensus 407 -~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~ 450 (471)
.+..+++|+.|++++| .+..+|. .+..+++|+.|+|++|.+.
T Consensus 175 ~~~~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNN--QLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSS--CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hHhccCCCcCEEECCCC--cCCcCCHHHhccccCCCEEEecCCCee
Confidence 4678899999999999 5567765 4788999999999999875
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.1e-21 Score=179.89 Aligned_cols=200 Identities=21% Similarity=0.321 Sum_probs=108.4
Q ss_pred CCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCC-CCCcch-hhhCCCCCcEEecCC-CCCCcCc-c
Q 012082 240 IMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANR-LKTLPA-TFGNLINLMNLDLGS-NEFTHLP-D 314 (471)
Q Consensus 240 ~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~-l~~lp~-~l~~l~~L~~L~l~~-~~l~~l~-~ 314 (471)
+..+|. +. .+|++|++++|.++.+|. .++++++|++|++++|. ++.++. .+.++++|++|++++ |.++.++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 32 367777777777766654 56667777777777775 666554 466666666666666 6666554 3
Q ss_pred ccCCCCCCCEEEeeCCCCCCcccccCCCCCCc---EEEccCC-CCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCC
Q 012082 315 TIGCLTSLKTLNVETNELEDLPYTIGNCSSLT---ELRLDFN-QLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTK 390 (471)
Q Consensus 315 ~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~---~L~l~~~-~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~ 390 (471)
.+..+++|++|++++|.+..+|. +..+++|+ .|++++| .++.++. ..+..+++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----------------------~~~~~l~~ 156 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPV----------------------NAFQGLCN 156 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECT----------------------TTTTTTBS
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCc----------------------ccccchhc
Confidence 45556666666666666555554 44444444 5555554 4444433 22444455
Q ss_pred Cc-EEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccc-hhccCC-CCccEEEeecCCCCcCchhhhcCCCCcEEEc
Q 012082 391 LK-ELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALP-RSIGNL-EMLEQLDISDDQIRILPDSFRLLSKLRVFRA 467 (471)
Q Consensus 391 L~-~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l-~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l 467 (471)
|+ .|++++|.++.++......++|++|++++|. .+..+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|++
T Consensus 157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~-~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK-YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA 233 (239)
T ss_dssp SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT-TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC-CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence 55 5555555555444433333455555555541 023332 234445 5555555555555555543 4555555554
Q ss_pred c
Q 012082 468 M 468 (471)
Q Consensus 468 ~ 468 (471)
.
T Consensus 234 ~ 234 (239)
T 2xwt_C 234 R 234 (239)
T ss_dssp T
T ss_pred c
Confidence 4
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.1e-21 Score=179.23 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=167.7
Q ss_pred CCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCC-CCCcch-hhcCCCCCcEEEeeC-CCCCCcc-hhhhCCCCCcEE
Q 012082 228 KDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQ-LINLPD-SFGDLINLIDLDLHA-NRLKTLP-ATFGNLINLMNL 302 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~-i~~lp~-~i~~l~~L~~L~L~~-~~l~~lp-~~l~~l~~L~~L 302 (471)
+.|++|++++|.+..++. .+.++++|++|++++|. ++.++. .|+++++|++|++++ |.++.+| ..+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999998875 78999999999999997 988865 689999999999998 9999886 468899999999
Q ss_pred ecCCCCCCcCccccCCCCCCC---EEEeeCC-CCCCccc-ccCCCCCCc-EEEccCCCCCcchhhhCCCCCCcEEEeecC
Q 012082 303 DLGSNEFTHLPDTIGCLTSLK---TLNVETN-ELEDLPY-TIGNCSSLT-ELRLDFNQLRALPEAIGKLECLEILTLHYN 376 (471)
Q Consensus 303 ~l~~~~l~~l~~~l~~l~~L~---~L~l~~~-~l~~l~~-~l~~l~~L~-~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 376 (471)
++++|.++.+|. ++.+++|+ +|++++| .+..++. .+..+++|+ .|++++|.++.+|......++|+.|++++|
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 999999999987 88888888 9999999 8988875 478899999 999999999988876655589999999999
Q ss_pred C-CCCCc-hhccCC-CCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCC
Q 012082 377 R-IKGLP-TTIGNL-TKLKELDVSFNELESITENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 377 ~-l~~l~-~~l~~l-~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n 422 (471)
. ++.++ ..+..+ ++|+.|++++|.++.++.. .+++|++|.++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4 88865 567788 8999999999999888765 6788888888765
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=2e-22 Score=206.90 Aligned_cols=177 Identities=22% Similarity=0.210 Sum_probs=80.9
Q ss_pred CcEEEEecCCCCCcc--cccchhcCCCCCccEEEeeCCCCCCC-----chh-hcCCCCccEEEeecCCCCC-----cchh
Q 012082 203 GAVVLDLRGKLTDQI--EWLPVSIGKLKDVTELNLSENRIMAL-----PSS-IAGIKTLKKLDIHSNQLIN-----LPDS 269 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~--~~l~~~~~~l~~L~~L~L~~~~~~~l-----~~~-i~~l~~L~~L~L~~~~i~~-----lp~~ 269 (471)
+++.|+++++..... ..++..+..+++|++|++++|.+... ... .....+|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 455666665544322 23445555566666666666554421 111 1223445555555555542 2334
Q ss_pred hcCCCCCcEEEeeCCCCCCc-----chhhh-CCCCCcEEecCCCCCCc-----CccccCCCCCCCEEEeeCCCCCCc---
Q 012082 270 FGDLINLIDLDLHANRLKTL-----PATFG-NLINLMNLDLGSNEFTH-----LPDTIGCLTSLKTLNVETNELEDL--- 335 (471)
Q Consensus 270 i~~l~~L~~L~L~~~~l~~l-----p~~l~-~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~l--- 335 (471)
+..+++|++|++++|.+... ...+. ..++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 44455555555555554421 11111 23455555555555443 344444455555555555544321
Q ss_pred ---ccccCCCCCCcEEEccCCCCCc-----chhhhCCCCCCcEEEeecCCCC
Q 012082 336 ---PYTIGNCSSLTELRLDFNQLRA-----LPEAIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 336 ---~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~ 379 (471)
+.....+++|++|++++|.++. ++..+..+++|+.|++++|.++
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 1111234455555555555443 3444444455555555555443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=6.7e-21 Score=182.12 Aligned_cols=206 Identities=30% Similarity=0.439 Sum_probs=142.8
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEE
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNL 302 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L 302 (471)
...+++|+.|+++++.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.++.++.. +.++++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345678888888888877664 4677888888888888877764 677888888888888888776543 6778888888
Q ss_pred ecCCCCCCcCccc-cCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCC
Q 012082 303 DLGSNEFTHLPDT-IGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIK 379 (471)
Q Consensus 303 ~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~ 379 (471)
++++|.++.++.. ++.+++|++|++++|.+..++.. +..+++|+.|++++|.++.++.. ++.+++|+.|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 8888887766544 57777888888888777766543 46777777777777777666543 466777777777777777
Q ss_pred CCc-hhccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCC
Q 012082 380 GLP-TTIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEM 438 (471)
Q Consensus 380 ~l~-~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~ 438 (471)
+++ ..+..+++|+.|++++|.+. +.+++|+.|.+..|.. ...+|.+++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~-~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKH-SGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHT-GGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhC-CCcccCcccccCC
Confidence 754 34566777777777777553 3355566666655532 2345555555443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=1.3e-20 Score=180.03 Aligned_cols=218 Identities=26% Similarity=0.349 Sum_probs=155.3
Q ss_pred EEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcC
Q 012082 233 LNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHL 312 (471)
Q Consensus 233 L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l 312 (471)
+++.++.+... .....+.+|+.|++.+|.+..++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.++.+
T Consensus 24 l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~ 100 (272)
T 3rfs_A 24 ANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL 100 (272)
T ss_dssp HHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC
T ss_pred HHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc
Confidence 33444444332 22455677888888888777664 3677888888888888877754 677888888888888888766
Q ss_pred ccc-cCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCCCch-hccCC
Q 012082 313 PDT-IGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPT-TIGNL 388 (471)
Q Consensus 313 ~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~-~l~~l 388 (471)
+.. ++.+++|++|++++|.+..++.. +..+++|+.|++++|.++.++.. ++.+++|+.|++++|.++.++. .+..+
T Consensus 101 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 101 PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 544 57788888888888887776544 57778888888888888776653 4677888888888888877553 45777
Q ss_pred CCCcEEEeeCCCCCcchhh-hcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC-cCchhhhcCCC
Q 012082 389 TKLKELDVSFNELESITEN-LCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR-ILPDSFRLLSK 461 (471)
Q Consensus 389 ~~L~~L~L~~n~l~~l~~~-l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~L~~ 461 (471)
++|+.|++++|.+..++.. +..+++|+.|++++|. +.+.+++|+.|++++|++. .+|.+++.++.
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--------~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP--------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC--------BCCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC--------ccccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888888888888766543 5677888888887772 2245677888887777776 66766666554
No 82
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.7e-20 Score=196.64 Aligned_cols=187 Identities=30% Similarity=0.399 Sum_probs=147.4
Q ss_pred CCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCC
Q 012082 228 KDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSN 307 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~ 307 (471)
.+|++|++++|.+..+|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 388999999999888887663 78999999999988888 567889999999998888887 554 8999999999
Q ss_pred CCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccC
Q 012082 308 EFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGN 387 (471)
Q Consensus 308 ~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~ 387 (471)
.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|. +..
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~ 200 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV 200 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH
Confidence 8888877 67888999999888888776 56788888888888888877 55 788888888888888777 443
Q ss_pred CCCC-------cEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccC
Q 012082 388 LTKL-------KELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGN 435 (471)
Q Consensus 388 l~~L-------~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~ 435 (471)
+| +.|+|++|.++.+|..+..+++|+.|+|++|... ..+|..++.
T Consensus 201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~-~~~p~~l~~ 252 (571)
T 3cvr_A 201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQ 252 (571)
T ss_dssp ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC-HHHHHHHHH
T ss_pred --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC-CcCHHHHHH
Confidence 66 8888888888887777777788888888777432 344555544
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=185.57 Aligned_cols=218 Identities=17% Similarity=0.217 Sum_probs=161.0
Q ss_pred CccEEEeeCCCCCC--Cch--hhcCCCCccEEEeecCCCC-Ccchhh--cCCCCCcEEEeeCCCCCCc-c----hhhhCC
Q 012082 229 DVTELNLSENRIMA--LPS--SIAGIKTLKKLDIHSNQLI-NLPDSF--GDLINLIDLDLHANRLKTL-P----ATFGNL 296 (471)
Q Consensus 229 ~L~~L~L~~~~~~~--l~~--~i~~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~l~~l-p----~~l~~l 296 (471)
.++.+.+.++.+.. +.. .+..+.+|++|++++|.+. ..|..+ +.+++|++|++++|.+... + ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46777777776652 111 1223456888888888877 345555 7888888888888887742 2 345678
Q ss_pred CCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCC---cc--cccCCCCCCcEEEccCCCCCcchhh----hCCCC
Q 012082 297 INLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNELED---LP--YTIGNCSSLTELRLDFNQLRALPEA----IGKLE 366 (471)
Q Consensus 297 ~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~---l~--~~l~~l~~L~~L~l~~~~l~~l~~~----l~~l~ 366 (471)
++|++|++++|.+..++ ..++.+++|++|++++|.+.. ++ ..+..+++|++|++++|.++.++.. ++.++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 88888888888887664 567788888888888887653 32 2336788888899988888766652 46778
Q ss_pred CCcEEEeecCCCCCC-chhccCC---CCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEE
Q 012082 367 CLEILTLHYNRIKGL-PTTIGNL---TKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQL 442 (471)
Q Consensus 367 ~L~~L~l~~~~l~~l-~~~l~~l---~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L 442 (471)
+|++|++++|.+++. |..+..+ ++|+.|++++|.++.+|..+. ++|+.|+|++| .+..+|. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N--~l~~~~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN--RLNRAPQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC--CCCSCCC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC--cCCCCch-hhhCCCccEE
Confidence 899999999988885 6666665 689999999998888877653 78999999888 4556654 6778889999
Q ss_pred EeecCCCCc
Q 012082 443 DISDDQIRI 451 (471)
Q Consensus 443 ~L~~n~l~~ 451 (471)
+|++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999888764
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=6.4e-22 Score=203.19 Aligned_cols=270 Identities=18% Similarity=0.178 Sum_probs=207.4
Q ss_pred cCCCcEEEEecCCCCCcc--cccchhcCCCCCccEEEeeCCCCCCC-c-hhhcCCC----CccEEEeecCCCC-----Cc
Q 012082 200 AKTGAVVLDLRGKLTDQI--EWLPVSIGKLKDVTELNLSENRIMAL-P-SSIAGIK----TLKKLDIHSNQLI-----NL 266 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~--~~l~~~~~~l~~L~~L~L~~~~~~~l-~-~~i~~l~----~L~~L~L~~~~i~-----~l 266 (471)
...+++.|+++++..... ..++..+..+++|++|++++|.+... + .....+. +|++|++++|.++ .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 345789999999876533 35677788899999999999988752 2 2233444 6999999999988 45
Q ss_pred chhhcCCCCCcEEEeeCCCCCCc-ch----h-hhCCCCCcEEecCCCCCCc-----CccccCCCCCCCEEEeeCCCCCCc
Q 012082 267 PDSFGDLINLIDLDLHANRLKTL-PA----T-FGNLINLMNLDLGSNEFTH-----LPDTIGCLTSLKTLNVETNELEDL 335 (471)
Q Consensus 267 p~~i~~l~~L~~L~L~~~~l~~l-p~----~-l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~l 335 (471)
+..+..+++|++|++++|.++.. +. . ....++|++|++++|.++. ++..+..+++|++|++++|.+...
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 78889999999999999988632 22 2 2236689999999998874 466677889999999999987642
Q ss_pred -----ccccC-CCCCCcEEEccCCCCCc-----chhhhCCCCCCcEEEeecCCCCCC------chhccCCCCCcEEEeeC
Q 012082 336 -----PYTIG-NCSSLTELRLDFNQLRA-----LPEAIGKLECLEILTLHYNRIKGL------PTTIGNLTKLKELDVSF 398 (471)
Q Consensus 336 -----~~~l~-~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~l------~~~l~~l~~L~~L~L~~ 398 (471)
...+. .+++|+.|++++|.++. ++..+..+++|+.|++++|.+++. +.....+++|+.|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 12222 36699999999999975 577788899999999999988762 23334689999999999
Q ss_pred CCCCc-----chhhhcCCCCCcEEEccCCcCCCC---ccchhcc-CCCCccEEEeecCCCCc-----CchhhhcCCCCcE
Q 012082 399 NELES-----ITENLCFAVSLKKLNVGNNFADLR---ALPRSIG-NLEMLEQLDISDDQIRI-----LPDSFRLLSKLRV 464 (471)
Q Consensus 399 n~l~~-----l~~~l~~~~~L~~L~L~~n~~~l~---~lp~~l~-~l~~L~~L~L~~n~l~~-----lp~~l~~L~~L~~ 464 (471)
|.++. ++..+..+++|++|++++|..... .+...+. ..++|++|++++|.++. ++.++..+++|+.
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 99986 677788899999999999843211 2222222 23699999999999983 5788899999999
Q ss_pred EEccC
Q 012082 465 FRAMR 469 (471)
Q Consensus 465 L~l~~ 469 (471)
|++.+
T Consensus 346 L~Ls~ 350 (461)
T 1z7x_W 346 LQISN 350 (461)
T ss_dssp EECCS
T ss_pred EEccC
Confidence 99875
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.9e-21 Score=191.31 Aligned_cols=247 Identities=20% Similarity=0.207 Sum_probs=192.9
Q ss_pred CCcEEEEecCCCCCcccccchhcCCC--CCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCC--cchhhcCCCCCc
Q 012082 202 TGAVVLDLRGKLTDQIEWLPVSIGKL--KDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLIN--LPDSFGDLINLI 277 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~~~~~~l--~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~ 277 (471)
...+.++++++... +..+..+ +.++.|++++|.+...+..+.++++|++|++++|.+.. ++..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34677888775443 3445555 78999999999888776667889999999999998873 778889999999
Q ss_pred EEEeeCCCCC-CcchhhhCCCCCcEEecCCC-CCC--cCccccCCCCCCCEEEeeCC-CCCC--cccccCCCC-CCcEEE
Q 012082 278 DLDLHANRLK-TLPATFGNLINLMNLDLGSN-EFT--HLPDTIGCLTSLKTLNVETN-ELED--LPYTIGNCS-SLTELR 349 (471)
Q Consensus 278 ~L~L~~~~l~-~lp~~l~~l~~L~~L~l~~~-~l~--~l~~~l~~l~~L~~L~l~~~-~l~~--l~~~l~~l~-~L~~L~ 349 (471)
+|++++|.++ ..|..+..+++|++|++++| .++ .++..+..+++|++|++++| .++. ++..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999887 56778889999999999999 677 46777888999999999999 8874 577788899 999999
Q ss_pred ccCCC--C--CcchhhhCCCCCCcEEEeecCC-CCC-CchhccCCCCCcEEEeeCCC-CC-cchhhhcCCCCCcEEEccC
Q 012082 350 LDFNQ--L--RALPEAIGKLECLEILTLHYNR-IKG-LPTTIGNLTKLKELDVSFNE-LE-SITENLCFAVSLKKLNVGN 421 (471)
Q Consensus 350 l~~~~--l--~~l~~~l~~l~~L~~L~l~~~~-l~~-l~~~l~~l~~L~~L~L~~n~-l~-~l~~~l~~~~~L~~L~L~~ 421 (471)
+++|. + ..++..+..+++|+.|++++|. +++ .+..+..+++|+.|++++|. +. .....+..+++|++|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 99994 4 4567777889999999999998 664 56788899999999999995 32 1223577899999999998
Q ss_pred CcCCCCccchhccCCCCccEEEeecCCCCc-Cchhhh
Q 012082 422 NFADLRALPRSIGNLEMLEQLDISDDQIRI-LPDSFR 457 (471)
Q Consensus 422 n~~~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~ 457 (471)
| .....+. .+. .+|..|++++|+++. .|.+++
T Consensus 282 ~-i~~~~~~-~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I-VPDGTLQ-LLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S-SCTTCHH-HHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred c-cCHHHHH-HHH--hhCcceEEecccCccccCCccc
Confidence 8 3322332 221 235666689999984 444444
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=3.8e-21 Score=189.15 Aligned_cols=233 Identities=16% Similarity=0.221 Sum_probs=190.8
Q ss_pred CCccEEEeeCCCCCCCchhhcCC--CCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCC--cchhhhCCCCCcEEe
Q 012082 228 KDVTELNLSENRIMALPSSIAGI--KTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKT--LPATFGNLINLMNLD 303 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l~~~i~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~ 303 (471)
..++.++++++.+. +..+..+ .++++|++++|.+...+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 35889999998876 5566666 89999999999988776667889999999999998873 788899999999999
Q ss_pred cCCCCCC-cCccccCCCCCCCEEEeeCC-CCC--CcccccCCCCCCcEEEccCC-CCCc--chhhhCCCC-CCcEEEeec
Q 012082 304 LGSNEFT-HLPDTIGCLTSLKTLNVETN-ELE--DLPYTIGNCSSLTELRLDFN-QLRA--LPEAIGKLE-CLEILTLHY 375 (471)
Q Consensus 304 l~~~~l~-~l~~~l~~l~~L~~L~l~~~-~l~--~l~~~l~~l~~L~~L~l~~~-~l~~--l~~~l~~l~-~L~~L~l~~ 375 (471)
+++|.++ ..+..++.+++|++|++++| .++ .++..+.++++|++|++++| .++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999888 56778899999999999999 677 36777889999999999999 8874 677788999 999999999
Q ss_pred C--CCCC--CchhccCCCCCcEEEeeCCC-CC-cchhhhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCC
Q 012082 376 N--RIKG--LPTTIGNLTKLKELDVSFNE-LE-SITENLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQI 449 (471)
Q Consensus 376 ~--~l~~--l~~~l~~l~~L~~L~L~~n~-l~-~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l 449 (471)
| .+++ ++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|..........++.+++|+.|+|++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 9 5553 77888899999999999999 55 556778889999999999984111122235788999999999999 5
Q ss_pred Cc-Cchhh-hcCCCCc
Q 012082 450 RI-LPDSF-RLLSKLR 463 (471)
Q Consensus 450 ~~-lp~~l-~~L~~L~ 463 (471)
+. ....+ ..++.|+
T Consensus 284 ~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 284 PDGTLQLLKEALPHLQ 299 (336)
T ss_dssp CTTCHHHHHHHSTTSE
T ss_pred CHHHHHHHHhhCcceE
Confidence 52 22223 3466665
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=7e-20 Score=191.97 Aligned_cols=186 Identities=30% Similarity=0.377 Sum_probs=151.4
Q ss_pred CCCcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEE
Q 012082 201 KTGAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLD 280 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 280 (471)
..+++.|+++++.... +|..+ +++|++|++++|.+..+| ..+++|++|++++|.++.+|. +++ +|++|+
T Consensus 58 ~~~L~~L~Ls~n~L~~---lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS---LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCCSC---CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred cCCccEEEeCCCCCCc---cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 3478889998875543 45544 378999999999998888 557889999999999988887 655 899999
Q ss_pred eeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh
Q 012082 281 LHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE 360 (471)
Q Consensus 281 L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~ 360 (471)
+++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.+..+|. +. ++|+.|++++|.++.+|.
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 99999988887 68899999999999988876 57889999999999888887 55 889999999999988887
Q ss_pred hhCCCCCC-------cEEEeecCCCCCCchhccCCCCCcEEEeeCCCCC-cchhhhc
Q 012082 361 AIGKLECL-------EILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE-SITENLC 409 (471)
Q Consensus 361 ~l~~l~~L-------~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~-~l~~~l~ 409 (471)
+.. +| +.|++++|.++.+|..+..+++|+.|+|++|.++ ..|..+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp -CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred -HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 544 67 9999999999999988888999999999999987 3444443
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=2.1e-19 Score=173.44 Aligned_cols=173 Identities=24% Similarity=0.347 Sum_probs=130.0
Q ss_pred CCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEec
Q 012082 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304 (471)
Q Consensus 225 ~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 304 (471)
..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. ++.+++|++|++++|.++.+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 35667778888887777764 36777788888888887777766 7778888888888887777654 777788888888
Q ss_pred CCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchh
Q 012082 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTT 384 (471)
Q Consensus 305 ~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 384 (471)
++|.++.+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+++++.
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~- 195 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA- 195 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-
Confidence 88877776 3567777888888888877776 467777788888888887777765 7777888888888887777754
Q ss_pred ccCCCCCcEEEeeCCCCCcc
Q 012082 385 IGNLTKLKELDVSFNELESI 404 (471)
Q Consensus 385 l~~l~~L~~L~L~~n~l~~l 404 (471)
+..+++|+.|++++|.+...
T Consensus 196 l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 196 LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GTTCTTCSEEEEEEEEEECC
T ss_pred hccCCCCCEEECcCCcccCC
Confidence 67778888888887776543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=177.23 Aligned_cols=220 Identities=17% Similarity=0.123 Sum_probs=161.7
Q ss_pred cCCCcEEEEecCCCCCcc--cccchhcCCCCCccEEEeeCCCCCC-Cchhh--cCCCCccEEEeecCCCCCc-c----hh
Q 012082 200 AKTGAVVLDLRGKLTDQI--EWLPVSIGKLKDVTELNLSENRIMA-LPSSI--AGIKTLKKLDIHSNQLINL-P----DS 269 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~~--~~l~~~~~~l~~L~~L~L~~~~~~~-l~~~i--~~l~~L~~L~L~~~~i~~l-p----~~ 269 (471)
....++.+.+.+...... ..+.. ...+++|++|++++|.+.. .|..+ ..+++|++|++++|.+... + ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 344566666666544321 11111 1234568889998888774 45555 7888899999998888742 2 34
Q ss_pred hcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCc---Cc--cccCCCCCCCEEEeeCCCCCCcccc----c
Q 012082 270 FGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTH---LP--DTIGCLTSLKTLNVETNELEDLPYT----I 339 (471)
Q Consensus 270 i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~---l~--~~l~~l~~L~~L~l~~~~l~~l~~~----l 339 (471)
+..+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++ ..++.+++|++|++++|.++.++.. +
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 557888999999999888665 568888899999999988653 32 2336788899999999888766542 4
Q ss_pred CCCCCCcEEEccCCCCCcc-hhhhCCC---CCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhhcCCCCCc
Q 012082 340 GNCSSLTELRLDFNQLRAL-PEAIGKL---ECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENLCFAVSLK 415 (471)
Q Consensus 340 ~~l~~L~~L~l~~~~l~~l-~~~l~~l---~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~ 415 (471)
..+++|++|++++|.++.. |..++.+ ++|++|++++|+++.+|..+. ++|+.|+|++|.++.++. +..+++|+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~ 297 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD 297 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence 6778899999999988766 6666655 689999999999888887664 789999999999887755 57788999
Q ss_pred EEEccCCc
Q 012082 416 KLNVGNNF 423 (471)
Q Consensus 416 ~L~L~~n~ 423 (471)
.|++++|.
T Consensus 298 ~L~L~~N~ 305 (310)
T 4glp_A 298 NLTLDGNP 305 (310)
T ss_dssp CEECSSTT
T ss_pred EEECcCCC
Confidence 99998884
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=1.4e-20 Score=187.43 Aligned_cols=232 Identities=20% Similarity=0.256 Sum_probs=175.4
Q ss_pred cchhcCCCCCccEEEeeCCCCCCCc-----hhhcCCC-CccEEEeecCCCCCc-chhhcCC-----CCCcEEEeeCCCCC
Q 012082 220 LPVSIGKLKDVTELNLSENRIMALP-----SSIAGIK-TLKKLDIHSNQLINL-PDSFGDL-----INLIDLDLHANRLK 287 (471)
Q Consensus 220 l~~~~~~l~~L~~L~L~~~~~~~l~-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~l-----~~L~~L~L~~~~l~ 287 (471)
+|..+...++|++|++++|.+...+ ..+.+++ +|++|++++|.++.. +..+..+ ++|++|++++|.++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 4555666677999999999988765 5678888 899999999988854 4445553 89999999999988
Q ss_pred Ccc-h----hhhCC-CCCcEEecCCCCCCcCcc-----ccCC-CCCCCEEEeeCCCCC-----CcccccCCCC-CCcEEE
Q 012082 288 TLP-A----TFGNL-INLMNLDLGSNEFTHLPD-----TIGC-LTSLKTLNVETNELE-----DLPYTIGNCS-SLTELR 349 (471)
Q Consensus 288 ~lp-~----~l~~l-~~L~~L~l~~~~l~~l~~-----~l~~-l~~L~~L~l~~~~l~-----~l~~~l~~l~-~L~~L~ 349 (471)
..+ . .+..+ ++|++|++++|.++..+. .+.. .++|++|++++|.+. .++..+..++ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 543 2 35556 899999999999885542 2444 368999999999887 3445556665 999999
Q ss_pred ccCCCCCcch-----hhhCCC-CCCcEEEeecCCCCC-----CchhccC-CCCCcEEEeeCCCCCcc-----hhhhcCCC
Q 012082 350 LDFNQLRALP-----EAIGKL-ECLEILTLHYNRIKG-----LPTTIGN-LTKLKELDVSFNELESI-----TENLCFAV 412 (471)
Q Consensus 350 l~~~~l~~l~-----~~l~~l-~~L~~L~l~~~~l~~-----l~~~l~~-l~~L~~L~L~~n~l~~l-----~~~l~~~~ 412 (471)
+++|.++... ..+..+ ++|+.|++++|.++. ++..+.. .++|+.|+|++|.++.. ...+..++
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~ 253 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLK 253 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTT
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCC
Confidence 9999986443 345556 599999999999887 5666666 45899999999998754 33446778
Q ss_pred CCcEEEccCCcCC------CCccchhccCCCCccEEEeecCCCCc
Q 012082 413 SLKKLNVGNNFAD------LRALPRSIGNLEMLEQLDISDDQIRI 451 (471)
Q Consensus 413 ~L~~L~L~~n~~~------l~~lp~~l~~l~~L~~L~L~~n~l~~ 451 (471)
+|+.|++++|... +..++..+..+++|+.|++++|++..
T Consensus 254 ~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 254 HLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 9999999988311 23444566788899999999999873
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.7e-19 Score=171.76 Aligned_cols=169 Identities=24% Similarity=0.345 Sum_probs=146.7
Q ss_pred hcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEE
Q 012082 247 IAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLN 326 (471)
Q Consensus 247 i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~ 326 (471)
+..+++|++|++++|.+..++. ++.+++|++|++++|.++.++. +.++++|++|++++|.++.++. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 4567889999999999988864 7889999999999999998876 8999999999999999888764 88899999999
Q ss_pred eeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchh
Q 012082 327 VETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITE 406 (471)
Q Consensus 327 l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 406 (471)
+++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++.
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 9999988874 678889999999999999887 457888999999999999988766 8888999999999999888764
Q ss_pred hhcCCCCCcEEEccCC
Q 012082 407 NLCFAVSLKKLNVGNN 422 (471)
Q Consensus 407 ~l~~~~~L~~L~L~~n 422 (471)
+..+++|+.|++++|
T Consensus 196 -l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCSEEEEEEE
T ss_pred -hccCCCCCEEECcCC
Confidence 788889999999888
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.1e-18 Score=162.73 Aligned_cols=172 Identities=33% Similarity=0.511 Sum_probs=130.8
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCC
Q 012082 229 DVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGS 306 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~ 306 (471)
..++++++++.+..+|..+. .+|++|++++|.+..++ ..++++++|++|++++|.++.++. .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 56678888888888776655 57888888888888664 457888888888888888876644 477888888888888
Q ss_pred CCCCcCcc-ccCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCCCCc-
Q 012082 307 NEFTHLPD-TIGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLP- 382 (471)
Q Consensus 307 ~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~- 382 (471)
|.++.++. .+..+++|++|++++|.+..++.. +..+++|+.|++++|.++.++. .++.+++|+.|++++|.++.++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88887653 457788888888888888777654 4677888888888888877765 4677788888888888877765
Q ss_pred hhccCCCCCcEEEeeCCCCC
Q 012082 383 TTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 383 ~~l~~l~~L~~L~L~~n~l~ 402 (471)
..+..+++|+.|++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 36677788888888887765
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3.4e-20 Score=184.67 Aligned_cols=224 Identities=20% Similarity=0.255 Sum_probs=165.5
Q ss_pred CCCcEEEEecCCCCCccc--ccchhcCCCC-CccEEEeeCCCCCCC-chhhcCC-----CCccEEEeecCCCCCcc-h--
Q 012082 201 KTGAVVLDLRGKLTDQIE--WLPVSIGKLK-DVTELNLSENRIMAL-PSSIAGI-----KTLKKLDIHSNQLINLP-D-- 268 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~--~l~~~~~~l~-~L~~L~L~~~~~~~l-~~~i~~l-----~~L~~L~L~~~~i~~lp-~-- 268 (471)
...++.|+++++...... .+...+..++ +|++|++++|.+... +..+..+ ++|++|++++|.++..+ .
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345899999988765432 2225677787 899999999988764 4444443 88999999999887443 3
Q ss_pred --hhcCC-CCCcEEEeeCCCCCCcch-----hhhC-CCCCcEEecCCCCCC-----cCccccCCCC-CCCEEEeeCCCCC
Q 012082 269 --SFGDL-INLIDLDLHANRLKTLPA-----TFGN-LINLMNLDLGSNEFT-----HLPDTIGCLT-SLKTLNVETNELE 333 (471)
Q Consensus 269 --~i~~l-~~L~~L~L~~~~l~~lp~-----~l~~-l~~L~~L~l~~~~l~-----~l~~~l~~l~-~L~~L~l~~~~l~ 333 (471)
.+..+ ++|++|++++|.++..+. .+.. ..+|++|++++|.++ .++..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 25555 899999999998885543 2444 368999999999887 4455566665 8999999999887
Q ss_pred Ccc-----cccCCC-CCCcEEEccCCCCCc-----chhhhCC-CCCCcEEEeecCCCCCCc-----hhccCCCCCcEEEe
Q 012082 334 DLP-----YTIGNC-SSLTELRLDFNQLRA-----LPEAIGK-LECLEILTLHYNRIKGLP-----TTIGNLTKLKELDV 396 (471)
Q Consensus 334 ~l~-----~~l~~l-~~L~~L~l~~~~l~~-----l~~~l~~-l~~L~~L~l~~~~l~~l~-----~~l~~l~~L~~L~L 396 (471)
... ..+..+ ++|+.|++++|.++. ++..+.. .++|+.|++++|.+++.+ ..+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 543 244555 599999999999876 6666665 458999999999988743 44577889999999
Q ss_pred eCCCCC--------cchhhhcCCCCCcEEEccCCcC
Q 012082 397 SFNELE--------SITENLCFAVSLKKLNVGNNFA 424 (471)
Q Consensus 397 ~~n~l~--------~l~~~l~~~~~L~~L~L~~n~~ 424 (471)
++|.+. .+...+..+++|+.|++++|..
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 999733 3344566778899999998843
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=4.9e-19 Score=187.33 Aligned_cols=187 Identities=23% Similarity=0.323 Sum_probs=160.6
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCC
Q 012082 229 DVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNE 308 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~ 308 (471)
.+..+.+..+.+..+.. +..+.+|++|++++|.+..++ .++.+++|+.|+|++|.+..++. +..+++|++|++++|.
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 34445556666655432 567788999999999999886 58899999999999999998876 8999999999999999
Q ss_pred CCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCC
Q 012082 309 FTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNL 388 (471)
Q Consensus 309 l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l 388 (471)
+..++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+
T Consensus 99 l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l 174 (605)
T 1m9s_A 99 IKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGL 174 (605)
T ss_dssp CCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccC
Confidence 98876 6889999999999999998875 588899999999999999888 568899999999999999999766 8899
Q ss_pred CCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCc
Q 012082 389 TKLKELDVSFNELESITENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 389 ~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~ 423 (471)
++|+.|+|++|.+..++ .+..+++|+.|+|++|.
T Consensus 175 ~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCc
Confidence 99999999999999875 57889999999999883
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=4.3e-18 Score=168.65 Aligned_cols=232 Identities=21% Similarity=0.285 Sum_probs=173.5
Q ss_pred EEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCCCch-hhcCCCCccEEEeecCCCCC-cc-hhhcCCCCCcE-EEe
Q 012082 206 VLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMALPS-SIAGIKTLKKLDIHSNQLIN-LP-DSFGDLINLID-LDL 281 (471)
Q Consensus 206 ~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~l~~-~i~~l~~L~~L~L~~~~i~~-lp-~~i~~l~~L~~-L~L 281 (471)
.++.++.. +..+|..+ .+++++|+|++|.+..+|. .|.++++|++|+|++|.+.. +| ..|.++++|.. +.+
T Consensus 13 ~v~C~~~~---Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 13 VFLCQESK---VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEEEESTT---CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EEEecCCC---CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45555543 34456544 3578999999999988875 57889999999999998754 54 35778888765 566
Q ss_pred eCCCCCCcc-hhhhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeC-CCCCCccc-ccCCC-CCCcEEEccCCCCC
Q 012082 282 HANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVET-NELEDLPY-TIGNC-SSLTELRLDFNQLR 356 (471)
Q Consensus 282 ~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~-~~l~~l~~-~l~~l-~~L~~L~l~~~~l~ 356 (471)
++|++..++ ..+..+++|++|++++|.+..++.. +....++..|++.+ +.+..++. .+..+ ..++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 678888774 5678899999999999988877543 34556677888865 45666653 33444 36888999999999
Q ss_pred cchhhhCCCCCCcEEEeec-CCCCCCch-hccCCCCCcEEEeeCCCCCcchhhhcCCCCCcEEEccCCcCCCCccchhcc
Q 012082 357 ALPEAIGKLECLEILTLHY-NRIKGLPT-TIGNLTKLKELDVSFNELESITENLCFAVSLKKLNVGNNFADLRALPRSIG 434 (471)
Q Consensus 357 ~l~~~l~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~ 434 (471)
.++..+....+|+.|.+.+ |.++.+|. .+..+++|+.|++++|.++.+|.. .+.+|++|.+.++ ..++.+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~-~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARST-YNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTC-TTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccC-CCcCcCC-Cch
Confidence 8888777778888998874 67777774 568889999999999999888763 4678888887665 3567887 478
Q ss_pred CCCCccEEEeec
Q 012082 435 NLEMLEQLDISD 446 (471)
Q Consensus 435 ~l~~L~~L~L~~ 446 (471)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 888999998865
No 96
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.8e-19 Score=190.81 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=75.1
Q ss_pred CCCCCcEEEccCCCCCc-chhhhC-CCCCCcEEEee----cCCCCCC------chhccCCCCCcEEEeeCCC--CC-cch
Q 012082 341 NCSSLTELRLDFNQLRA-LPEAIG-KLECLEILTLH----YNRIKGL------PTTIGNLTKLKELDVSFNE--LE-SIT 405 (471)
Q Consensus 341 ~l~~L~~L~l~~~~l~~-l~~~l~-~l~~L~~L~l~----~~~l~~l------~~~l~~l~~L~~L~L~~n~--l~-~l~ 405 (471)
.+++|++|+++.+.++. .+..++ .+++|+.|+++ .+.+++. +..+..+++|+.|++++|. ++ ...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 35556666665555532 122233 26666666665 3445542 2234556677777776443 33 112
Q ss_pred hh-hcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeecCCCC--cCchhhhcCCCCcEEEccC
Q 012082 406 EN-LCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISDDQIR--ILPDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 406 ~~-l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~L~~L~~L~l~~ 469 (471)
.. ...+++|+.|++++|......++..+..+++|++|+|++|.++ .++..+..+++|+.|++.+
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 22 2346778888887774332345556677788888888888876 3455567788888887754
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=2.5e-19 Score=170.38 Aligned_cols=167 Identities=23% Similarity=0.342 Sum_probs=94.1
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCC
Q 012082 229 DVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNE 308 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~ 308 (471)
.+..++++++.+..++ .+..+++|++|++++|.++.++ .++.+++|++|++++|+++.+|. +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3444445555555444 3455555556666555555554 45555566666666665555544 5555666666666665
Q ss_pred CCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCC
Q 012082 309 FTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNL 388 (471)
Q Consensus 309 l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l 388 (471)
++.++.... .+|++|++++|.+..++ .+..+++|+.|++++|.++.++ .++.+++|+.|++++|.++++ ..+..+
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccC
Confidence 555543222 55666666666555554 3555666666666666665554 355566666666666666555 455556
Q ss_pred CCCcEEEeeCCCCCc
Q 012082 389 TKLKELDVSFNELES 403 (471)
Q Consensus 389 ~~L~~L~L~~n~l~~ 403 (471)
++|+.|++++|.+..
T Consensus 172 ~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCCEEEEEEEEEEC
T ss_pred CCCCEEeCCCCcccC
Confidence 666666666665543
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=9.9e-18 Score=158.02 Aligned_cols=173 Identities=30% Similarity=0.426 Sum_probs=150.6
Q ss_pred CCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEee
Q 012082 251 KTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVE 328 (471)
Q Consensus 251 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~ 328 (471)
...++++++++.++.+|..+. ++|++|++++|.+..++. .+.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 357889999999999998765 689999999999997754 68999999999999999997754 47899999999999
Q ss_pred CCCCCCcc-cccCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCCCch-hccCCCCCcEEEeeCCCCCcch
Q 012082 329 TNELEDLP-YTIGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFNELESIT 405 (471)
Q Consensus 329 ~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~ 405 (471)
+|.+..++ ..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.++. .+..+++|+.|+|++|.+..++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999886 4567899999999999999988765 5789999999999999999775 6889999999999999999876
Q ss_pred h-hhcCCCCCcEEEccCCcCC
Q 012082 406 E-NLCFAVSLKKLNVGNNFAD 425 (471)
Q Consensus 406 ~-~l~~~~~L~~L~L~~n~~~ 425 (471)
. .+..+++|+.|++++|...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 5 5778899999999998543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1e-17 Score=165.90 Aligned_cols=231 Identities=21% Similarity=0.258 Sum_probs=146.7
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCC-Ccch-hhhCCCCCcE-EecCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLK-TLPA-TFGNLINLMN-LDLGS 306 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~-~lp~-~l~~l~~L~~-L~l~~ 306 (471)
++++.+++.++.+|..+. .++++|+|++|.|+.+|. .|.++++|++|+|++|++. .+|. .|.+++++++ +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 456677777777776552 467777777777777764 4677777777777777764 3443 4566776664 44455
Q ss_pred CCCCcC-ccccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccC-CCCCcchh-hhCCC-CCCcEEEeecCCCCCC
Q 012082 307 NEFTHL-PDTIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDF-NQLRALPE-AIGKL-ECLEILTLHYNRIKGL 381 (471)
Q Consensus 307 ~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~-~~l~~l~~-~l~~l-~~L~~L~l~~~~l~~l 381 (471)
|+++.+ |..+..+++|++|++++|.+..++. ......++..|++.+ +.+..++. .+..+ ..++.|++++|+++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 667766 3456777777777777777766653 233445566666644 45555554 23333 3567777777777777
Q ss_pred chhccCCCCCcEEEee-CCCCCcchh-hhcCCCCCcEEEccCCcCCCCccchhccCCCCccEEEeec-CCCCcCchhhhc
Q 012082 382 PTTIGNLTKLKELDVS-FNELESITE-NLCFAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDISD-DQIRILPDSFRL 458 (471)
Q Consensus 382 ~~~l~~l~~L~~L~L~-~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~l~~ 458 (471)
+.......+|+.|++. +|.++.++. .+..+++|+.|++++| .+..+|.. .+.+|+.|.+.+ ++++.+|. +..
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N--~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~ 244 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT--RIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEK 244 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS--CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC--CcCccChh--hhccchHhhhccCCCcCcCCC-chh
Confidence 6665566677777775 355666664 3466677777777777 55666643 355666666555 45666664 677
Q ss_pred CCCCcEEEcc
Q 012082 459 LSKLRVFRAM 468 (471)
Q Consensus 459 L~~L~~L~l~ 468 (471)
+++|+.+++.
T Consensus 245 l~~L~~l~l~ 254 (350)
T 4ay9_X 245 LVALMEASLT 254 (350)
T ss_dssp CCSCCEEECS
T ss_pred CcChhhCcCC
Confidence 7777776653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=4.4e-18 Score=180.03 Aligned_cols=172 Identities=24% Similarity=0.346 Sum_probs=114.2
Q ss_pred CCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEec
Q 012082 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDL 304 (471)
Q Consensus 225 ~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l 304 (471)
..+++|+.|++++|.+..++ .+..+++|++|+|++|.+..++. ++.+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34556666677766666664 36666777777777776666655 666777777777777666654 5666777777777
Q ss_pred CCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchh
Q 012082 305 GSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTT 384 (471)
Q Consensus 305 ~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 384 (471)
++|.+..++ .+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|.+++++ .
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred cCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 777666653 466667777777777766665 456666777777777777766655 666777777777777766663 4
Q ss_pred ccCCCCCcEEEeeCCCCCc
Q 012082 385 IGNLTKLKELDVSFNELES 403 (471)
Q Consensus 385 l~~l~~L~~L~L~~n~l~~ 403 (471)
+..+++|+.|+|++|.+..
T Consensus 193 l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GTTCTTCSEEECCSEEEEC
T ss_pred HccCCCCCEEEccCCcCcC
Confidence 6667777777777766543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-17 Score=151.60 Aligned_cols=151 Identities=18% Similarity=0.294 Sum_probs=105.2
Q ss_pred CCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCC-cchhhhCCCCCcEEe
Q 012082 225 GKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKT-LPATFGNLINLMNLD 303 (471)
Q Consensus 225 ~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 303 (471)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45667888888888887776 5777888888888888766654 57778888888888887774 466677777888888
Q ss_pred cCCCCCCc-CccccCCCCCCCEEEeeCCC-CCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCC
Q 012082 304 LGSNEFTH-LPDTIGCLTSLKTLNVETNE-LEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 304 l~~~~l~~-l~~~l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 379 (471)
+++|.++. .+..++.+++|++|++++|. +..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 88877763 45666777777777777776 66655 4666666666666666666555 4555666666666666543
No 102
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=8.6e-19 Score=185.58 Aligned_cols=152 Identities=14% Similarity=0.098 Sum_probs=69.8
Q ss_pred cEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCC-----CchhhcCCCCccEEEeecCCCC-----CcchhhcCC
Q 012082 204 AVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA-----LPSSIAGIKTLKKLDIHSNQLI-----NLPDSFGDL 273 (471)
Q Consensus 204 l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-----l~~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~l 273 (471)
++.|++.++.......++.....+++|++|++++|.+.. ++..+..+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 555555554311112223333345555555555554332 1223344555555555555543 223334455
Q ss_pred CCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCC----CcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEE
Q 012082 274 INLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEF----THLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELR 349 (471)
Q Consensus 274 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l----~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~ 349 (471)
++|++|++++|.+..+|..+..+++|++|+++++.. ...+..+..+++|+.|+++++....+|..+..+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 555555555555555555555555555555543211 1222333444444444444443334444444444455555
Q ss_pred ccCCCC
Q 012082 350 LDFNQL 355 (471)
Q Consensus 350 l~~~~l 355 (471)
+++|.+
T Consensus 300 Ls~~~l 305 (592)
T 3ogk_B 300 LLYALL 305 (592)
T ss_dssp ETTCCC
T ss_pred cCCCcC
Confidence 544443
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.5e-18 Score=161.05 Aligned_cols=167 Identities=26% Similarity=0.367 Sum_probs=145.5
Q ss_pred CCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEee
Q 012082 249 GIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVE 328 (471)
Q Consensus 249 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~ 328 (471)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3456777888999998887 5788999999999999999887 78899999999999999998877 8999999999999
Q ss_pred CCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchhhh
Q 012082 329 TNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITENL 408 (471)
Q Consensus 329 ~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~l 408 (471)
+|.+..++.... ++|+.|++++|.++.++ .+..+++|+.|++++|++++++ .+..+++|+.|++++|.+..+ ..+
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 999988875433 89999999999998886 4889999999999999999885 688899999999999999887 667
Q ss_pred cCCCCCcEEEccCCc
Q 012082 409 CFAVSLKKLNVGNNF 423 (471)
Q Consensus 409 ~~~~~L~~L~L~~n~ 423 (471)
..+++|+.|++++|.
T Consensus 169 ~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCCCCEEEEEEEE
T ss_pred ccCCCCCEEeCCCCc
Confidence 888999999998883
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.2e-17 Score=151.44 Aligned_cols=151 Identities=18% Similarity=0.290 Sum_probs=96.7
Q ss_pred cCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCc-CccccCCCCCCCEEE
Q 012082 248 AGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTH-LPDTIGCLTSLKTLN 326 (471)
Q Consensus 248 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~ 326 (471)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45567777888877777776 5777777777777777666553 56677777777777777663 455666666666666
Q ss_pred eeCCCCCC-cccccCCCCCCcEEEccCCC-CCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCC
Q 012082 327 VETNELED-LPYTIGNCSSLTELRLDFNQ-LRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 327 l~~~~l~~-l~~~l~~l~~L~~L~l~~~~-l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~ 402 (471)
+++|.+.. .+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 66666653 34555666666666666665 55554 3556666666666666666554 4555566666666665543
No 105
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=4.6e-20 Score=193.98 Aligned_cols=193 Identities=22% Similarity=0.271 Sum_probs=147.2
Q ss_pred cCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCC--------------CCCcchhhhCCCCCcEEe-cCCCCCCcC
Q 012082 248 AGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANR--------------LKTLPATFGNLINLMNLD-LGSNEFTHL 312 (471)
Q Consensus 248 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~--------------l~~lp~~l~~l~~L~~L~-l~~~~l~~l 312 (471)
..+++|+.|+|++|.++.+|..+++|++|+.|++++|. ....|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 55677778888888777778778888888877775552 224456777788888887 555433322
Q ss_pred cc------ccCC--CCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchh
Q 012082 313 PD------TIGC--LTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTT 384 (471)
Q Consensus 313 ~~------~l~~--l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~ 384 (471)
+. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 21 1111 1258899999999888886 88899999999999999999888999999999999999999887 8
Q ss_pred ccCCCCCcEEEeeCCCCCcc--hhhhcCCCCCcEEEccCCcCCCCccchh----ccCCCCccEEEe
Q 012082 385 IGNLTKLKELDVSFNELESI--TENLCFAVSLKKLNVGNNFADLRALPRS----IGNLEMLEQLDI 444 (471)
Q Consensus 385 l~~l~~L~~L~L~~n~l~~l--~~~l~~~~~L~~L~L~~n~~~l~~lp~~----l~~l~~L~~L~L 444 (471)
++.+++|+.|+|++|.++.+ |..++.+++|+.|+|++| .+..+|.. +..+|+|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N--~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN--SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS--GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC--cCCCCccHHHHHHHHCcccCccCC
Confidence 88899999999999999887 788889999999999998 44455443 334888988864
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=5e-17 Score=148.59 Aligned_cols=176 Identities=32% Similarity=0.450 Sum_probs=126.0
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeCCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVETNE 331 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 331 (471)
+.++++++.++.+|..+ .++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777778888777654 45888888888888877654 67888888888888888877654 4678888888888888
Q ss_pred CCCcccc-cCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCCCch-hccCCCCCcEEEeeCCCCCcchhhh
Q 012082 332 LEDLPYT-IGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPT-TIGNLTKLKELDVSFNELESITENL 408 (471)
Q Consensus 332 l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~l 408 (471)
+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 8777644 56778888888888877766653 5677778888887777777654 3667777777777777543
Q ss_pred cCCCCCcEEEccCCcCCCCccchhccCCCC
Q 012082 409 CFAVSLKKLNVGNNFADLRALPRSIGNLEM 438 (471)
Q Consensus 409 ~~~~~L~~L~L~~n~~~l~~lp~~l~~l~~ 438 (471)
+.+++|+.|.+..|... ..+|.+++.++.
T Consensus 162 ~~~~~l~~L~~~~n~~~-g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHS-GVVRNSAGSVAP 190 (208)
T ss_dssp CCTTTTHHHHHHHHHCT-TTBBCTTSSBCT
T ss_pred cCCCCHHHHHHHHHhCC-ceeeccCccccC
Confidence 34566777776665322 456666665543
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=8.1e-20 Score=192.14 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=161.5
Q ss_pred hcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCC--------------CCcCccccCCCCCCCEEE-eeCCCCCC
Q 012082 270 FGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNE--------------FTHLPDTIGCLTSLKTLN-VETNELED 334 (471)
Q Consensus 270 i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~--------------l~~l~~~l~~l~~L~~L~-l~~~~l~~ 334 (471)
+..+++|+.|+|++|+++.+|..++++++|+.|++++|. ....|..++.+++|+.|+ ++.+.+..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 367899999999999999999999999999999997663 224466777888888887 44443322
Q ss_pred ccc------ccCC--CCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcchh
Q 012082 335 LPY------TIGN--CSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESITE 406 (471)
Q Consensus 335 l~~------~l~~--l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~ 406 (471)
++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++|.++.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 211 0111 1259999999999999987 99999999999999999999999999999999999999999988
Q ss_pred hhcCCCCCcEEEccCCcCCCCcc--chhccCCCCccEEEeecCCCCcCch----hhhcCCCCcEEEc
Q 012082 407 NLCFAVSLKKLNVGNNFADLRAL--PRSIGNLEMLEQLDISDDQIRILPD----SFRLLSKLRVFRA 467 (471)
Q Consensus 407 ~l~~~~~L~~L~L~~n~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~l 467 (471)
.++.+++|+.|+|++| .+..+ |..++.+++|+.|+|++|+++.+|+ .+..+|+|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N--~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNN--RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSS--CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCC--CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7899999999999999 55666 8999999999999999999997764 3455999999864
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=1.3e-16 Score=145.91 Aligned_cols=174 Identities=29% Similarity=0.460 Sum_probs=134.6
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEecCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNE 308 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 308 (471)
+.++.+++.+..+|..+ ..+|++|++++|.++.++. .++.+++|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777778877777554 3578889998888887764 467888899999988888877654 6788889999998888
Q ss_pred CCcCccc-cCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCCCchhc
Q 012082 309 FTHLPDT-IGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKGLPTTI 385 (471)
Q Consensus 309 l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l 385 (471)
++.++.. +..+++|++|++++|.+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence 8877654 57888899999988888877654 67888889999988888877664 677888888888888554
Q ss_pred cCCCCCcEEEeeCCCCC-cchhhhcCCC
Q 012082 386 GNLTKLKELDVSFNELE-SITENLCFAV 412 (471)
Q Consensus 386 ~~l~~L~~L~L~~n~l~-~l~~~l~~~~ 412 (471)
..+++|+.|+++.|.++ .+|..++.++
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 34567888888888776 5666555443
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=5.6e-16 Score=143.96 Aligned_cols=147 Identities=37% Similarity=0.549 Sum_probs=89.4
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNE 308 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~ 308 (471)
+.++.+++.+..+|..+. .+|++|++++|.+..+ |..++.+++|++|+|++|++..+|. .+..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666666666665443 5677777777766655 4556666777777777776666653 34666666666666666
Q ss_pred CCcCccc-cCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCC
Q 012082 309 FTHLPDT-IGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 309 l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~ 379 (471)
++.++.. +..+++|++|++++|.+..+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6655443 355666666666666666666555556666666666665555543 3445555555555555544
No 110
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=3.6e-18 Score=180.75 Aligned_cols=266 Identities=19% Similarity=0.150 Sum_probs=142.0
Q ss_pred CcEEEEecCCCCCcccccchhcCCCCCccEEEeeCCCCCC-----CchhhcCCCCccEEEeecCC--CC--CcchhhcCC
Q 012082 203 GAVVLDLRGKLTDQIEWLPVSIGKLKDVTELNLSENRIMA-----LPSSIAGIKTLKKLDIHSNQ--LI--NLPDSFGDL 273 (471)
Q Consensus 203 ~l~~L~l~~~~~~~~~~l~~~~~~l~~L~~L~L~~~~~~~-----l~~~i~~l~~L~~L~L~~~~--i~--~lp~~i~~l 273 (471)
+++.|++.++.......++.....+++|++|++++|.+.. ++.....+++|++|++++|. +. .++..+..+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 4555555444211111123333344555555555544332 11222244455555555443 11 111222334
Q ss_pred CCCcEEEeeCC-CCCCcchhhhCCCCCcEEecCCCC-------CCcCccccCCCCCCCEE-EeeCCCCCCcccccCCCCC
Q 012082 274 INLIDLDLHAN-RLKTLPATFGNLINLMNLDLGSNE-------FTHLPDTIGCLTSLKTL-NVETNELEDLPYTIGNCSS 344 (471)
Q Consensus 274 ~~L~~L~L~~~-~l~~lp~~l~~l~~L~~L~l~~~~-------l~~l~~~l~~l~~L~~L-~l~~~~l~~l~~~l~~l~~ 344 (471)
++|++|++++| .+..+|..+..+++|++|+++++. +..++..+..+++|+.| .+.......++..+..+++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 55555555554 233344444555555555543332 12233344555555555 2332222234444456788
Q ss_pred CcEEEccCCCCCc--chhhhCCCCCCcEEEeecCCCCC--CchhccCCCCCcEEEeeC---------CCCCc--chhhhc
Q 012082 345 LTELRLDFNQLRA--LPEAIGKLECLEILTLHYNRIKG--LPTTIGNLTKLKELDVSF---------NELES--ITENLC 409 (471)
Q Consensus 345 L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~L~~---------n~l~~--l~~~l~ 409 (471)
|++|++++|.++. +...+..+++|+.|++++| +.. ++.....+++|+.|++.+ +.++. +.....
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 9999999888753 3444678899999999888 433 334445688899998844 34442 222223
Q ss_pred CCCCCcEEEccCCcCCCCccchhccCCCCccEEEee--c----CCCCcC------chhhhcCCCCcEEEccC
Q 012082 410 FAVSLKKLNVGNNFADLRALPRSIGNLEMLEQLDIS--D----DQIRIL------PDSFRLLSKLRVFRAMR 469 (471)
Q Consensus 410 ~~~~L~~L~L~~n~~~l~~lp~~l~~l~~L~~L~L~--~----n~l~~l------p~~l~~L~~L~~L~l~~ 469 (471)
.+++|++|.++.|......+......+++|+.|+++ + ++++.. +..+..+++|+.|++.+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 478899997766633222222222358999999998 3 566633 33478899999999865
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=6.4e-16 Score=143.58 Aligned_cols=148 Identities=33% Similarity=0.459 Sum_probs=120.4
Q ss_pred ccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeCC
Q 012082 253 LKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVETN 330 (471)
Q Consensus 253 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~ 330 (471)
-+.++++++.++.+|..+. ++|++|+|++|.++.+ |..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 5678888888888887653 8899999999988876 56788889999999999988888654 578888889998888
Q ss_pred CCCCcccc-cCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCC
Q 012082 331 ELEDLPYT-IGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 331 ~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~ 402 (471)
.+..++.. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|+.|++.+|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 88877654 56788888888888888888887888888888888888888866 45777888888888888765
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.4e-16 Score=156.79 Aligned_cols=170 Identities=29% Similarity=0.367 Sum_probs=114.6
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchh-hc-CCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS-FG-DLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSN 307 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~ 307 (471)
++++++++.+..+|..+. ..+++|+|++|.++.++.. +. ++++|++|+|++|+++.++ ..+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777766543 3467777777777766443 44 6777777777777777665 35777777777777777
Q ss_pred CCCcCcc-ccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcchhhh----CCCCCCcEEEeecCCCCCC
Q 012082 308 EFTHLPD-TIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPEAI----GKLECLEILTLHYNRIKGL 381 (471)
Q Consensus 308 ~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~l----~~l~~L~~L~l~~~~l~~l 381 (471)
.++.++. .+..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7776644 456777777777777777765 455667777777777777777766544 4577777777777777776
Q ss_pred c-hhccCCCC--CcEEEeeCCCCC
Q 012082 382 P-TTIGNLTK--LKELDVSFNELE 402 (471)
Q Consensus 382 ~-~~l~~l~~--L~~L~L~~n~l~ 402 (471)
| ..+..++. ++.|+|++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5 45555655 366777777654
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=5.4e-18 Score=179.45 Aligned_cols=268 Identities=16% Similarity=0.146 Sum_probs=190.2
Q ss_pred cCCCcEEEEecCCCCCc--ccccchhcCCCCCccEEEeeCCC--CC--CCchhhcCCCCccEEEeecC-CCCCcchhhcC
Q 012082 200 AKTGAVVLDLRGKLTDQ--IEWLPVSIGKLKDVTELNLSENR--IM--ALPSSIAGIKTLKKLDIHSN-QLINLPDSFGD 272 (471)
Q Consensus 200 ~~~~l~~L~l~~~~~~~--~~~l~~~~~~l~~L~~L~L~~~~--~~--~l~~~i~~l~~L~~L~L~~~-~i~~lp~~i~~ 272 (471)
...+++.|+++++.... ..+++.....+++|++|++++|. +. .++..+.++++|++|++++| .+..++..+..
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 45689999999876443 34566666788999999999986 22 12333456799999999988 55567788889
Q ss_pred CCCCcEEEeeCCC-------CCCcchhhhCCCCCcEE-ecCCCCCCcCccccCCCCCCCEEEeeCCCCCC--cccccCCC
Q 012082 273 LINLIDLDLHANR-------LKTLPATFGNLINLMNL-DLGSNEFTHLPDTIGCLTSLKTLNVETNELED--LPYTIGNC 342 (471)
Q Consensus 273 l~~L~~L~L~~~~-------l~~lp~~l~~l~~L~~L-~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~--l~~~l~~l 342 (471)
+++|+.|+++.+. +..++..+.++++|+.| .+.......++..+..+++|++|++++|.+.. +...+..+
T Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 9999999976653 33566688999999999 55555445666666678999999999998663 33446789
Q ss_pred CCCcEEEccCCCCC--cchhhhCCCCCCcEEEeec---------CCCCC--CchhccCCCCCcEEEeeCCCCCcc-hhhh
Q 012082 343 SSLTELRLDFNQLR--ALPEAIGKLECLEILTLHY---------NRIKG--LPTTIGNLTKLKELDVSFNELESI-TENL 408 (471)
Q Consensus 343 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~---------~~l~~--l~~~l~~l~~L~~L~L~~n~l~~l-~~~l 408 (471)
++|+.|++++| +. .++.....+++|+.|++.+ +.+++ +......+++|+.|.+..+.++.. ...+
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l 392 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence 99999999988 42 2333334688999999954 34444 222334589999999988888732 2333
Q ss_pred -cCCCCCcEEEcc--C--CcCCCC------ccchhccCCCCccEEEeecCCCC-cCchhhhc-CCCCcEEEccC
Q 012082 409 -CFAVSLKKLNVG--N--NFADLR------ALPRSIGNLEMLEQLDISDDQIR-ILPDSFRL-LSKLRVFRAMR 469 (471)
Q Consensus 409 -~~~~~L~~L~L~--~--n~~~l~------~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~-L~~L~~L~l~~ 469 (471)
..+++|+.|+++ + .+..+. .++..+..+++|+.|+|++ +++ ..+..+.. +++|+.|++.+
T Consensus 393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~ 465 (594)
T 2p1m_B 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF 465 (594)
T ss_dssp HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC
Confidence 358899999998 3 112333 2333467789999999987 666 33344554 99999998864
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=7.7e-16 Score=142.16 Aligned_cols=146 Identities=23% Similarity=0.391 Sum_probs=87.2
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSNE 308 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~ 308 (471)
+.++++++.+..+|..+. .+|++|++++|.++.++. .|..+++|++|+|++|+++.+ |..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666665443 466777777777666543 566667777777777766655 5566666666777666666
Q ss_pred CCcCccc-cCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCC
Q 012082 309 FTHLPDT-IGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRI 378 (471)
Q Consensus 309 l~~l~~~-l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l 378 (471)
++.+|.. +..+++|++|++++|.+..+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 6666544 35566666666666666554 3344555555555555555554443 244455555555555544
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=7.3e-16 Score=142.30 Aligned_cols=147 Identities=24% Similarity=0.336 Sum_probs=87.9
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcc--hhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLP--DSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSN 307 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~ 307 (471)
++++++++.+..+|..+. ..+++|++++|.++.++ ..|+.+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 466777777766665443 34567777777766552 235666777777777776665543 5666666666666666
Q ss_pred CCCcCcc-ccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCC
Q 012082 308 EFTHLPD-TIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 308 ~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~ 379 (471)
.++.++. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6665543 355666666666666666555 34455555556565555555544 344555555555555555443
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=9.2e-16 Score=141.63 Aligned_cols=147 Identities=20% Similarity=0.358 Sum_probs=121.2
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcc--hhhhCCCCCcEEecCCCCCCcCcc-ccCCCCCCCEEEeeCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLP--ATFGNLINLMNLDLGSNEFTHLPD-TIGCLTSLKTLNVETN 330 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~ 330 (471)
+.++++++.++.+|..+. ..+++|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 588999999998887653 45689999999998774 347889999999999999887755 6888899999999999
Q ss_pred CCCCccc-ccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCCCC
Q 012082 331 ELEDLPY-TIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 331 ~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~l~ 402 (471)
.+..++. .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8887764 477888999999999888776 55677888888888888888886 677888888888888888775
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.65 E-value=1.1e-15 Score=141.22 Aligned_cols=147 Identities=25% Similarity=0.441 Sum_probs=118.7
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNE 331 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~ 331 (471)
+.++++++.++.+|..+. ++|+.|++++|.++.+|. .+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888888887654 688999999999887765 688888999999999988866 6778888889999998888
Q ss_pred CCCcccc-cCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCC
Q 012082 332 LEDLPYT-IGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 332 l~~l~~~-l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~ 402 (471)
+..+|.. +..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++ ..+..+++|+.|+|++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8888755 46788888888888888766 446778888888888888888865 35777888888888888764
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.1e-16 Score=137.41 Aligned_cols=133 Identities=24% Similarity=0.264 Sum_probs=93.7
Q ss_pred CCCccEEEeeCCCCC--CCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCC-cchhhhCCCCCcEEe
Q 012082 227 LKDVTELNLSENRIM--ALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKT-LPATFGNLINLMNLD 303 (471)
Q Consensus 227 l~~L~~L~L~~~~~~--~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 303 (471)
.++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 457778888887776 6777677777788888888877776 667777788888888887776 566666677777777
Q ss_pred cCCCCCCcCc--cccCCCCCCCEEEeeCCCCCCccc----ccCCCCCCcEEEccCCCCCcchh
Q 012082 304 LGSNEFTHLP--DTIGCLTSLKTLNVETNELEDLPY----TIGNCSSLTELRLDFNQLRALPE 360 (471)
Q Consensus 304 l~~~~l~~l~--~~l~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~~l~~l~~ 360 (471)
+++|.++.++ ..+..+++|++|++++|.+..++. .+..+++|+.|++++|.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 7777777665 566666777777777766665554 55566666666666666555543
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=7.9e-16 Score=153.00 Aligned_cols=170 Identities=28% Similarity=0.309 Sum_probs=143.1
Q ss_pred ccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchh-hh-CCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeC
Q 012082 253 LKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT-FG-NLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVET 329 (471)
Q Consensus 253 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-l~-~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~ 329 (471)
-+.++++++.++.+|..+. ..++.|+|++|.++.++.. +. ++++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3689999999999998654 4689999999999988664 55 8999999999999999876 4689999999999999
Q ss_pred CCCCCccc-ccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCCCchhc----cCCCCCcEEEeeCCCCCc
Q 012082 330 NELEDLPY-TIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKGLPTTI----GNLTKLKELDVSFNELES 403 (471)
Q Consensus 330 ~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~l----~~l~~L~~L~L~~n~l~~ 403 (471)
|.+..++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998864 578899999999999999877 457889999999999999999988654 578999999999999998
Q ss_pred chh-hhcCCCC--CcEEEccCCcC
Q 012082 404 ITE-NLCFAVS--LKKLNVGNNFA 424 (471)
Q Consensus 404 l~~-~l~~~~~--L~~L~L~~n~~ 424 (471)
++. .+..++. ++.|+|++|..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred cCHHHhhhccHhhcceEEecCCCc
Confidence 763 5566665 48899998843
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=9.1e-17 Score=173.89 Aligned_cols=113 Identities=32% Similarity=0.381 Sum_probs=63.9
Q ss_pred chhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCC
Q 012082 244 PSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLK 323 (471)
Q Consensus 244 ~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~ 323 (471)
+..+..+.+|++|+|++|.+..+|..+.++++|++|+|++|.++.+|..+.++++|++|+|++|.++.+|..++.+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 44455555566666666655555555555556666666666555555555556666666666665555555555555666
Q ss_pred EEEeeCCCCCCcccccCCCCCCcEEEccCCCCC
Q 012082 324 TLNVETNELEDLPYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 324 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 356 (471)
+|++++|.+..+|..++++++|+.|++++|.+.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 666665555555555555555666666555554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=8.8e-16 Score=135.30 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCccEEEeecCCCC--CcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCc-CccccCCCCCCCEEEe
Q 012082 251 KTLKKLDIHSNQLI--NLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTH-LPDTIGCLTSLKTLNV 327 (471)
Q Consensus 251 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l 327 (471)
++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 55666666666665 5555556666666666666666555 455556666666666665554 4444444555555555
Q ss_pred eCCCCCCcc--cccCCCCCCcEEEccCCCCCcchh----hhCCCCCCcEEEeecCCCCCCc
Q 012082 328 ETNELEDLP--YTIGNCSSLTELRLDFNQLRALPE----AIGKLECLEILTLHYNRIKGLP 382 (471)
Q Consensus 328 ~~~~l~~l~--~~l~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~~l~~l~ 382 (471)
++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..+|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 555555543 344555555555555555544443 3444555555555555444433
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=2.8e-16 Score=170.03 Aligned_cols=174 Identities=24% Similarity=0.234 Sum_probs=94.0
Q ss_pred CccEEEeeCCCCCCCchhhcCCCCccEE-----EeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEe
Q 012082 229 DVTELNLSENRIMALPSSIAGIKTLKKL-----DIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLD 303 (471)
Q Consensus 229 ~L~~L~L~~~~~~~l~~~i~~l~~L~~L-----~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 303 (471)
.++.|++.++.+...+..+.....|+.+ ++..|.+...+..+..+.+|++|+|++|.+..+|..+.++++|++|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 3455555555544443333222223322 23333444445667777778888888777777777777777788888
Q ss_pred cCCCCCCcCccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCC-Cc
Q 012082 304 LGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKG-LP 382 (471)
Q Consensus 304 l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~-l~ 382 (471)
|++|.++.+|..++.+++|++|++++|.+..+|..++++++|+.|++++|.++.+|..++.+++|+.|+|++|.++. +|
T Consensus 254 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 254 LNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred eeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 88877777777777777888888888777777777777777888888877777777777777778888888777776 34
Q ss_pred hhccCCC-CCcEEEeeCCCCC
Q 012082 383 TTIGNLT-KLKELDVSFNELE 402 (471)
Q Consensus 383 ~~l~~l~-~L~~L~L~~n~l~ 402 (471)
..+..+. .+..|+|.+|.++
T Consensus 334 ~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 334 KILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHhhcchhhhHHhhccCccc
Confidence 4433221 1122445555553
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.4e-15 Score=129.71 Aligned_cols=124 Identities=26% Similarity=0.277 Sum_probs=86.0
Q ss_pred CCCccEEEeeCCCCC--CCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCC-cchhhhCCCCCcEEe
Q 012082 227 LKDVTELNLSENRIM--ALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKT-LPATFGNLINLMNLD 303 (471)
Q Consensus 227 l~~L~~L~L~~~~~~--~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~ 303 (471)
.++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 356777777777776 5666667777777777777777766 567777777777777777776 666666677777777
Q ss_pred cCCCCCCcCc--cccCCCCCCCEEEeeCCCCCCccc----ccCCCCCCcEEEcc
Q 012082 304 LGSNEFTHLP--DTIGCLTSLKTLNVETNELEDLPY----TIGNCSSLTELRLD 351 (471)
Q Consensus 304 l~~~~l~~l~--~~l~~l~~L~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~ 351 (471)
+++|.++.++ ..++.+++|++|++++|.+..++. .+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777654 566666777777777666665543 45556666666554
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=5.3e-15 Score=131.43 Aligned_cols=130 Identities=25% Similarity=0.301 Sum_probs=64.4
Q ss_pred CCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCCCccccc-CCCCCCcEEEc
Q 012082 272 DLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLPYTI-GNCSSLTELRL 350 (471)
Q Consensus 272 ~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~l 350 (471)
++.+|++|++++|.++.+|......++|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|+.|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 34444555555554444432222222555555555554444 34444555555555555555444333 44555555555
Q ss_pred cCCCCCcchh--hhCCCCCCcEEEeecCCCCCCchh----ccCCCCCcEEEeeCCCCC
Q 012082 351 DFNQLRALPE--AIGKLECLEILTLHYNRIKGLPTT----IGNLTKLKELDVSFNELE 402 (471)
Q Consensus 351 ~~~~l~~l~~--~l~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~L~~n~l~ 402 (471)
++|.++.+|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555444 445555555555555555554442 555556666665555544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.5e-14 Score=124.66 Aligned_cols=123 Identities=27% Similarity=0.377 Sum_probs=78.4
Q ss_pred CCCcEEEccCCCCC--cchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCc-chhhhcCCCCCcEEEc
Q 012082 343 SSLTELRLDFNQLR--ALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELES-ITENLCFAVSLKKLNV 419 (471)
Q Consensus 343 ~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~-l~~~l~~~~~L~~L~L 419 (471)
++|+.|++++|.++ .+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. ++..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45555666665555 5555555666666666666666555 555666666666666666665 5555555667777777
Q ss_pred cCCcCCCCccc--hhccCCCCccEEEeecCCCCcCch----hhhcCCCCcEEEcc
Q 012082 420 GNNFADLRALP--RSIGNLEMLEQLDISDDQIRILPD----SFRLLSKLRVFRAM 468 (471)
Q Consensus 420 ~~n~~~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~L~~L~~L~l~ 468 (471)
++| .+..++ ..++.+++|++|++++|+++.+|. .+..+++|+.|++.
T Consensus 96 s~N--~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGN--KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTS--CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCC--cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666 344443 566777777777777777776654 57777777777764
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=7.2e-15 Score=130.55 Aligned_cols=131 Identities=23% Similarity=0.259 Sum_probs=85.1
Q ss_pred cCCCCCccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhh-hCCCCCcEE
Q 012082 224 IGKLKDVTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATF-GNLINLMNL 302 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L 302 (471)
+..+.+|++|++++|.+..++......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3456677777777777776644223233777777777777766 45667777777777777777666443 677777777
Q ss_pred ecCCCCCCcCcc--ccCCCCCCCEEEeeCCCCCCcccc----cCCCCCCcEEEccCCCC
Q 012082 303 DLGSNEFTHLPD--TIGCLTSLKTLNVETNELEDLPYT----IGNCSSLTELRLDFNQL 355 (471)
Q Consensus 303 ~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~~~l 355 (471)
++++|.++.+|. .++.+++|+.|++++|.+..+|.. +..+++|+.|++++|..
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777766665 566666666666666666655543 55566666666665554
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=1e-13 Score=124.96 Aligned_cols=124 Identities=27% Similarity=0.448 Sum_probs=80.3
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchh--hcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDS--FGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSN 307 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~--i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 307 (471)
++++++++.+..+|..+.. +|++|++++|.++.++.. ++.+++|++|+|++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777665543 677777777777766542 66777777777777777655 556777777777777777
Q ss_pred CCCcCcc-ccCCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCC
Q 012082 308 EFTHLPD-TIGCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 308 ~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~ 356 (471)
.++.++. .+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7765543 355666666666666666644 445555666666666665553
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=123.32 Aligned_cols=123 Identities=28% Similarity=0.478 Sum_probs=80.2
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEF 309 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l 309 (471)
++++++++.+..+|..+. .+|++|++++|.++.+|..+..+++|++|+|++|.++.++ ..|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 466777777777665443 4677777777777777766777777777777777777664 3466777777777777776
Q ss_pred CcCcc-ccCCCCCCCEEEeeCCCCCCccc-ccCCCCCCcEEEccCCCC
Q 012082 310 THLPD-TIGCLTSLKTLNVETNELEDLPY-TIGNCSSLTELRLDFNQL 355 (471)
Q Consensus 310 ~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l 355 (471)
+.++. .+..+++|++|++++|.+..++. .+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66543 45666666666666666665554 244556666666665554
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.9e-13 Score=123.13 Aligned_cols=125 Identities=23% Similarity=0.383 Sum_probs=77.6
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchh--hhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPAT--FGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETN 330 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~--l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~ 330 (471)
++++++++.++.+|..+.. +|++|++++|.++.++.. +..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765433 677777777777766542 66777777777777776655 555666666666666666
Q ss_pred CCCCccc-ccCCCCCCcEEEccCCCCCcc-hhhhCCCCCCcEEEeecCCCCC
Q 012082 331 ELEDLPY-TIGNCSSLTELRLDFNQLRAL-PEAIGKLECLEILTLHYNRIKG 380 (471)
Q Consensus 331 ~l~~l~~-~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~ 380 (471)
.+..++. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6665543 255566666666666665543 3344555555555555555443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.3e-13 Score=121.01 Aligned_cols=123 Identities=27% Similarity=0.382 Sum_probs=78.8
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeCCCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVETNEL 332 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l 332 (471)
++++++++.++.+|..+. ++|++|++++|.++.+|..+.++++|++|++++|.++.++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567777777777776542 5677777777777777777777777777777777777664 3466666677777766666
Q ss_pred CCccc-ccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCC
Q 012082 333 EDLPY-TIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRI 378 (471)
Q Consensus 333 ~~l~~-~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l 378 (471)
..++. .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 65543 35556666666666666655544 244555555555555544
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=8.8e-16 Score=139.23 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCchhhcCCCCccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCC
Q 012082 242 ALPSSIAGIKTLKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTS 321 (471)
Q Consensus 242 ~l~~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~ 321 (471)
.+|..+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .++.+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 34444455555555555555544444 444455555555555555444444444444555555554444443 3444444
Q ss_pred CCEEEeeCCCCCCccc--ccCCCCCCcEEEccCCCC
Q 012082 322 LKTLNVETNELEDLPY--TIGNCSSLTELRLDFNQL 355 (471)
Q Consensus 322 L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~l 355 (471)
|++|++++|.+..++. .+..+++|+.|++++|.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4444444444443332 334444444444444433
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=2.6e-13 Score=132.96 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=85.0
Q ss_pred CCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCc-EEEccCCcCCCCccc-hhccCCCCc
Q 012082 364 KLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESITE-NLCFAVSLK-KLNVGNNFADLRALP-RSIGNLEML 439 (471)
Q Consensus 364 ~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~-~L~L~~n~~~l~~lp-~~l~~l~~L 439 (471)
.+++|+.+++.+|+++.++ ..+.++++|+.|++.+| +..++. .+.++.+|+ .+.+.++ +..++ ..+..|++|
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS---VTAIEFGAFMGCDNL 299 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT---CCEECTTTTTTCTTE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc---ceEEchhhhhCCccC
Confidence 3789999999999999977 56899999999999987 776654 567888999 9999764 55664 568899999
Q ss_pred cEEEeecCCCCcCc-hhhhcCCCCcEEEc
Q 012082 440 EQLDISDDQIRILP-DSFRLLSKLRVFRA 467 (471)
Q Consensus 440 ~~L~L~~n~l~~lp-~~l~~L~~L~~L~l 467 (471)
+.|++++|+++.++ .+|.+|++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999877 58999999999874
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.4e-15 Score=137.88 Aligned_cols=125 Identities=22% Similarity=0.308 Sum_probs=70.9
Q ss_pred ccEEEeecC--CCCCcchhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCC
Q 012082 253 LKKLDIHSN--QLINLPDSFGDLINLIDLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETN 330 (471)
Q Consensus 253 L~~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 330 (471)
|+...+.++ .++.+|..++.+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 334444433 44455556666677777777766666666 666666666666666666666655555556666666666
Q ss_pred CCCCcccccCCCCCCcEEEccCCCCCcchh--hhCCCCCCcEEEeecCCCC
Q 012082 331 ELEDLPYTIGNCSSLTELRLDFNQLRALPE--AIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 331 ~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~--~l~~l~~L~~L~l~~~~l~ 379 (471)
.+..+| .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 104 ~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 104 QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555544 34455555555555555554432 3444555555555554443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=2.7e-12 Score=113.85 Aligned_cols=124 Identities=31% Similarity=0.532 Sum_probs=73.2
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEecCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNE 308 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 308 (471)
+.++++++.+..+|..+. .+|++|++++|.++.++. .++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 556666666666654332 466666776666665543 346666666666666666665543 4566666666666666
Q ss_pred CCcCccc-cCCCCCCCEEEeeCCCCCCcccc-cCCCCCCcEEEccCCCCC
Q 012082 309 FTHLPDT-IGCLTSLKTLNVETNELEDLPYT-IGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 309 l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~ 356 (471)
++.++.. +..+++|++|++++|.+..+|.. +..+++|+.|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6655443 35556666666666665555443 244555555555555543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.39 E-value=4e-12 Score=112.73 Aligned_cols=126 Identities=32% Similarity=0.511 Sum_probs=70.2
Q ss_pred ccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeCC
Q 012082 253 LKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVETN 330 (471)
Q Consensus 253 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~ 330 (471)
.+.++++++.++.+|..+ .++|++|++++|+++.+|. .+..+++|++|++++|.++.++.. ++.+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666666666443 3566777777776665554 346666666666666666655433 355566666666666
Q ss_pred CCCCcccc-cCCCCCCcEEEccCCCCCcchhh-hCCCCCCcEEEeecCCCCC
Q 012082 331 ELEDLPYT-IGNCSSLTELRLDFNQLRALPEA-IGKLECLEILTLHYNRIKG 380 (471)
Q Consensus 331 ~l~~l~~~-l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~l~~ 380 (471)
.+..++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 55555432 34455555555555555544433 2344445555554444433
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=5.5e-11 Score=119.48 Aligned_cols=233 Identities=15% Similarity=0.193 Sum_probs=172.3
Q ss_pred cCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcchhhhCCCCCcE
Q 012082 224 IGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLPATFGNLINLMN 301 (471)
Q Consensus 224 ~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 301 (471)
+.++ +|+.+.+..+ +..++ .+|.+ .+|+.+.+.. .+..++ ..|.+|.+|+.+++..|.++.++...-.+.+|+.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~ 207 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEE 207 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSE
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCE
Confidence 4444 6889988765 55554 34555 4699999886 666664 5688999999999999999988876555789999
Q ss_pred EecCCCCCCcCc-cccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCC
Q 012082 302 LDLGSNEFTHLP-DTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 302 L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~ 379 (471)
+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++.......+|+.+.+. +.++.++. ++..+++|+.+.+.++.+.
T Consensus 208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred EEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 999854 66653 45678889999998874 56665444444789999984 45666644 6778999999999888765
Q ss_pred -----CC-chhccCCCCCcEEEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccc-hhccCCCCccEEEeecCCCCc
Q 012082 380 -----GL-PTTIGNLTKLKELDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALP-RSIGNLEMLEQLDISDDQIRI 451 (471)
Q Consensus 380 -----~l-~~~l~~l~~L~~L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~ 451 (471)
.+ ...+..|++|+.+.+. +.+..++. .+.++.+|+.+.|..+ +..++ ..+..+ +|+.+++.+|.+..
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~---l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN---VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT---CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred CCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc---ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 23 3678889999999998 45776654 5667899999999665 45554 357778 99999999988876
Q ss_pred Cc-hhhhcCC-CCcEEEcc
Q 012082 452 LP-DSFRLLS-KLRVFRAM 468 (471)
Q Consensus 452 lp-~~l~~L~-~L~~L~l~ 468 (471)
++ ..|..++ .++.|++.
T Consensus 360 l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 360 VFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CCCSSCCCSCTTCCEEEEC
T ss_pred cccccccCCCCCccEEEeC
Confidence 55 5577775 67777653
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=1.7e-11 Score=108.52 Aligned_cols=102 Identities=29% Similarity=0.513 Sum_probs=64.6
Q ss_pred cEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEecCCCC
Q 012082 231 TELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSNE 308 (471)
Q Consensus 231 ~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~~ 308 (471)
+.++++++.+..+|..+. .+|++|++++|.+..+ |..|+++++|++|+|++|+++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566777777766666543 5677777777766665 44566666677777777666666554 4566666666666666
Q ss_pred CCcCccc-cCCCCCCCEEEeeCCCCCC
Q 012082 309 FTHLPDT-IGCLTSLKTLNVETNELED 334 (471)
Q Consensus 309 l~~l~~~-l~~l~~L~~L~l~~~~l~~ 334 (471)
++.+|.. +..+++|++|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 6666543 5556666666666665543
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.2e-11 Score=106.72 Aligned_cols=102 Identities=28% Similarity=0.436 Sum_probs=69.5
Q ss_pred cEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeCCC
Q 012082 254 KKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVETNE 331 (471)
Q Consensus 254 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 331 (471)
+.++++++.++.+|..+. .+|++|+|++|+++.+ |..+.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 6777777777777766 44567777777777777777776654 3566777777777777
Q ss_pred CCCcccc-cCCCCCCcEEEccCCCCCc
Q 012082 332 LEDLPYT-IGNCSSLTELRLDFNQLRA 357 (471)
Q Consensus 332 l~~l~~~-l~~l~~L~~L~l~~~~l~~ 357 (471)
+..+|.. +..+++|+.|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 6666543 5566666666666666543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.25 E-value=3.1e-10 Score=114.02 Aligned_cols=231 Identities=16% Similarity=0.234 Sum_probs=176.9
Q ss_pred CCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEE
Q 012082 226 KLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNL 302 (471)
Q Consensus 226 ~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L 302 (471)
.+..++.+.+.+ .+..++ .+|.++ +|+.+.+..+ ++.++ ..|.++ +|+.+.+.. .+..++ ..|.+|.+|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346777777765 345443 456664 7999999776 67665 346664 799999986 677664 579999999999
Q ss_pred ecCCCCCCcCccccCCCCCCCEEEeeCCCCCCcc-cccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCC
Q 012082 303 DLGSNEFTHLPDTIGCLTSLKTLNVETNELEDLP-YTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGL 381 (471)
Q Consensus 303 ~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l 381 (471)
++++|.++.++.......+|+.+.+..+ +..++ ..+.+|++|+.+.+..+ ++.++.......+|+.+.+. +.++.+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNI 262 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEE
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEE
Confidence 9999999999877666799999999854 66664 55778999999999864 66666544333789999994 556665
Q ss_pred -chhccCCCCCcEEEeeCCCCC-----cch-hhhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEeecCCCCcCc
Q 012082 382 -PTTIGNLTKLKELDVSFNELE-----SIT-ENLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILP 453 (471)
Q Consensus 382 -~~~l~~l~~L~~L~L~~n~l~-----~l~-~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp 453 (471)
...+..|++|+.+.+.++.+. .++ ..+.++++|+.+.+.++ +..++. .+..|++|+.+.|.++ ++.+.
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 468899999999999988765 343 56778999999999754 556654 5778999999999554 77665
Q ss_pred -hhhhcCCCCcEEEccC
Q 012082 454 -DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 454 -~~l~~L~~L~~L~l~~ 469 (471)
.+|.+| +|+.+.+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTSSSSS-CCCEEEECC
T ss_pred HHhCCCC-CCCEEEEcC
Confidence 679999 999999864
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=3.5e-11 Score=106.03 Aligned_cols=102 Identities=31% Similarity=0.492 Sum_probs=62.1
Q ss_pred ccEEEeeCCCCCCCchhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcEEEeeCCCCCCcchh-hhCCCCCcEEecCCC
Q 012082 230 VTELNLSENRIMALPSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLIDLDLHANRLKTLPAT-FGNLINLMNLDLGSN 307 (471)
Q Consensus 230 L~~L~L~~~~~~~l~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~l~~~ 307 (471)
.++++++++.+..+|..+. .+|++|+|++|.++.+ |..|+++++|++|+|++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3566666666666665443 5666666666666655 44566666666666666666666543 456666666666666
Q ss_pred CCCcCccc-cCCCCCCCEEEeeCCCCC
Q 012082 308 EFTHLPDT-IGCLTSLKTLNVETNELE 333 (471)
Q Consensus 308 ~l~~l~~~-l~~l~~L~~L~l~~~~l~ 333 (471)
.++.++.. +..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66655443 555566666666555543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=3e-11 Score=118.15 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=125.6
Q ss_pred CCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCC----CCcC-ccccCCCCCC
Q 012082 250 IKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNE----FTHL-PDTIGCLTSL 322 (471)
Q Consensus 250 l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~----l~~l-~~~l~~l~~L 322 (471)
+.+|+.|.|.+ .++.++ ..|.+|++|+.|++..|.+..++ ..|..+.++..+....+. ...+ ...+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 666664 34677777777777777766554 346666666666554421 1111 1112222233
Q ss_pred C--------------------------EEEeeCCCCCCccccc-CCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEee
Q 012082 323 K--------------------------TLNVETNELEDLPYTI-GNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLH 374 (471)
Q Consensus 323 ~--------------------------~L~l~~~~l~~l~~~l-~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~ 374 (471)
+ .+.+.++-...-...+ ..|++|+.+++++|.++.++. .+..+.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 3 2322222100000011 137899999999999998877 46789999999999
Q ss_pred cCCCCCCc-hhccCCCCCc-EEEeeCCCCCcch-hhhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEe
Q 012082 375 YNRIKGLP-TTIGNLTKLK-ELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDI 444 (471)
Q Consensus 375 ~~~l~~l~-~~l~~l~~L~-~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L 444 (471)
.| +..++ ..+.++++|+ .+.+.+ .++.++ ..+.++++|+.+++.+| .+..++. .+..+++|+.+..
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n--~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD--KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS--CCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC--ccCccchhhhcCCcchhhhcc
Confidence 87 77765 6788999999 999988 777665 56778999999999877 5667765 6888999998863
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=6.8e-11 Score=104.19 Aligned_cols=102 Identities=30% Similarity=0.424 Sum_probs=64.8
Q ss_pred ccEEEeecCCCCCcchhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCCCCCcCccc-cCCCCCCCEEEeeCC
Q 012082 253 LKKLDIHSNQLINLPDSFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSNEFTHLPDT-IGCLTSLKTLNVETN 330 (471)
Q Consensus 253 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~ 330 (471)
.+.++++++.++.+|..+ ..+|++|+|++|.++.+ |..+.++++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 456777777777776654 26677777777777666 44566677777777777776666544 356666666666666
Q ss_pred CCCCccc-ccCCCCCCcEEEccCCCCC
Q 012082 331 ELEDLPY-TIGNCSSLTELRLDFNQLR 356 (471)
Q Consensus 331 ~l~~l~~-~l~~l~~L~~L~l~~~~l~ 356 (471)
.+..++. .+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666554 2555666666666665543
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=7.7e-12 Score=124.49 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=50.0
Q ss_pred CCccEEEeeCCCCCCC-----chhhc-CCCCccEEEeecCCCCCc--chhhcCCCCCcEEEeeCCCCCCc-----chhh-
Q 012082 228 KDVTELNLSENRIMAL-----PSSIA-GIKTLKKLDIHSNQLINL--PDSFGDLINLIDLDLHANRLKTL-----PATF- 293 (471)
Q Consensus 228 ~~L~~L~L~~~~~~~l-----~~~i~-~l~~L~~L~L~~~~i~~l--p~~i~~l~~L~~L~L~~~~l~~l-----p~~l- 293 (471)
+.|++|++++|.++.. ...+. ...+|++|+|++|.++.. ......+.+|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777777766532 12222 224666666666665521 11122334566666666655421 1122
Q ss_pred hCCCCCcEEecCCCCCCc-----CccccCCCCCCCEEEeeCCCC
Q 012082 294 GNLINLMNLDLGSNEFTH-----LPDTIGCLTSLKTLNVETNEL 332 (471)
Q Consensus 294 ~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l 332 (471)
...++|++|++++|.++. ++..+..+++|++|++++|.+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l 195 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC
Confidence 134455555555555442 233333444444444444443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=120.54 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=79.6
Q ss_pred CCccEEEeecCCCCC-----cchhhc-CCCCCcEEEeeCCCCCC--cchhhhCCCCCcEEecCCCCCCcC-----cccc-
Q 012082 251 KTLKKLDIHSNQLIN-----LPDSFG-DLINLIDLDLHANRLKT--LPATFGNLINLMNLDLGSNEFTHL-----PDTI- 316 (471)
Q Consensus 251 ~~L~~L~L~~~~i~~-----lp~~i~-~l~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~l~~~~l~~l-----~~~l- 316 (471)
.+|++|++++|.++. +...+. ...+|++|+|++|.++. +..-...+++|++|++++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 457777777777663 222232 22577777777776652 111122344667777777766521 1222
Q ss_pred CCCCCCCEEEeeCCCCCC-----cccccCCCCCCcEEEccCCCCCc-----chhhhCCCCCCcEEEeecCCCCC-----C
Q 012082 317 GCLTSLKTLNVETNELED-----LPYTIGNCSSLTELRLDFNQLRA-----LPEAIGKLECLEILTLHYNRIKG-----L 381 (471)
Q Consensus 317 ~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l~~-----l 381 (471)
....+|++|++++|.++. ++..+..+++|++|++++|.++. +...+..+++|+.|++++|.+++ +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666666665542 23334455556666666665532 23344445555555555555554 2
Q ss_pred chhccCCCCCcEEEeeCCCCC
Q 012082 382 PTTIGNLTKLKELDVSFNELE 402 (471)
Q Consensus 382 ~~~l~~l~~L~~L~L~~n~l~ 402 (471)
+..+..+++|+.|+|++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 233444455555555555554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=1.4e-09 Score=106.81 Aligned_cols=100 Identities=23% Similarity=0.262 Sum_probs=61.3
Q ss_pred EEeeCC-CCCCCchhhcCCCCccEEEeec-CCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCC
Q 012082 233 LNLSEN-RIMALPSSIAGIKTLKKLDIHS-NQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNE 308 (471)
Q Consensus 233 L~L~~~-~~~~l~~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~ 308 (471)
++++++ .+..+|. +..+.+|++|+|++ |.+..+| ..|+++++|++|+|++|+++.+| ..|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5666666 66666666666664 6666554 44666666666666666666553 345666666666666666
Q ss_pred CCcCccccCCCCCCCEEEeeCCCCC
Q 012082 309 FTHLPDTIGCLTSLKTLNVETNELE 333 (471)
Q Consensus 309 l~~l~~~l~~l~~L~~L~l~~~~l~ 333 (471)
++.+|..+.....|+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 6666554433333666666666554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=2.5e-09 Score=105.07 Aligned_cols=103 Identities=26% Similarity=0.293 Sum_probs=89.6
Q ss_pred cEEEeecC-CCCCcchhhcCCCCCcEEEeeC-CCCCCcc-hhhhCCCCCcEEecCCCCCCcCc-cccCCCCCCCEEEeeC
Q 012082 254 KKLDIHSN-QLINLPDSFGDLINLIDLDLHA-NRLKTLP-ATFGNLINLMNLDLGSNEFTHLP-DTIGCLTSLKTLNVET 329 (471)
Q Consensus 254 ~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~ 329 (471)
..++++++ .++.+|. ++.+.+|++|+|++ |.+..+| ..|.++++|++|+|++|.++.++ ..++.+++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999999 99999999999996 9999887 56999999999999999999775 4679999999999999
Q ss_pred CCCCCcccccCCCCCCcEEEccCCCCCc
Q 012082 330 NELEDLPYTIGNCSSLTELRLDFNQLRA 357 (471)
Q Consensus 330 ~~l~~l~~~l~~l~~L~~L~l~~~~l~~ 357 (471)
|.+..+|..+.....|+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999998766655559999999998863
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=3.4e-09 Score=104.69 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=46.5
Q ss_pred CCCCCcEEEccCCCCCc-chhhh---CCCCCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCCcc-hhhhcC
Q 012082 341 NCSSLTELRLDFNQLRA-LPEAI---GKLECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELESI-TENLCF 410 (471)
Q Consensus 341 ~l~~L~~L~l~~~~l~~-l~~~l---~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~ 410 (471)
.+++|+.|++.+|.+.. .+..+ ..+++|++|+++.|.+.+ ++..+..+++|+.|+|++|.++.- ...+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46677777777766642 11112 346677888887777765 334445667788888887776622 122221
Q ss_pred CCCCcEEEccCC
Q 012082 411 AVSLKKLNVGNN 422 (471)
Q Consensus 411 ~~~L~~L~L~~n 422 (471)
.- ...++++++
T Consensus 330 al-g~~~~~~~~ 340 (362)
T 2ra8_A 330 SL-PMKIDVSDS 340 (362)
T ss_dssp HC-CSEEECCSB
T ss_pred Hc-CCEEEecCC
Confidence 00 345677665
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=9.2e-09 Score=101.59 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred CccEEEeecCCCC---------CcchhhcCCCCCcEEEeeCCCCC----------CcchhhhCCCCCcEEecCCCCCCcC
Q 012082 252 TLKKLDIHSNQLI---------NLPDSFGDLINLIDLDLHANRLK----------TLPATFGNLINLMNLDLGSNEFTHL 312 (471)
Q Consensus 252 ~L~~L~L~~~~i~---------~lp~~i~~l~~L~~L~L~~~~l~----------~lp~~l~~l~~L~~L~l~~~~l~~l 312 (471)
.++.|.+..+... .+..++.++++|+.|.+...... .++..+..+++|+.|.+++|.-..+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 4667777654432 12334556788888888654321 2444556677777777776632233
Q ss_pred ccccCCCCCCCEEEeeCCCCCCc-cccc--CCCCCCcEEEccCC--C------CCcchhhh--CCCCCCcEEEeecCCCC
Q 012082 313 PDTIGCLTSLKTLNVETNELEDL-PYTI--GNCSSLTELRLDFN--Q------LRALPEAI--GKLECLEILTLHYNRIK 379 (471)
Q Consensus 313 ~~~l~~l~~L~~L~l~~~~l~~l-~~~l--~~l~~L~~L~l~~~--~------l~~l~~~l--~~l~~L~~L~l~~~~l~ 379 (471)
+. + .+++|++|++..+.+..- ...+ ..+++|+.|+++.+ . +..+...+ ..+++|+.|++.+|.+.
T Consensus 188 ~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 188 GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 33 2 266777777766655421 1112 25667777766421 0 11122222 23566666666666655
Q ss_pred C-Cchhc---cCCCCCcEEEeeCCCCCc-----chhhhcCCCCCcEEEccCCc
Q 012082 380 G-LPTTI---GNLTKLKELDVSFNELES-----ITENLCFAVSLKKLNVGNNF 423 (471)
Q Consensus 380 ~-l~~~l---~~l~~L~~L~L~~n~l~~-----l~~~l~~~~~L~~L~L~~n~ 423 (471)
+ .+..+ ..+++|+.|+|+.|.++. +...+..+++|+.|++++|.
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 3 11111 235666666666666653 22333445666666666653
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.4e-08 Score=90.62 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=44.6
Q ss_pred chhcCCCCCccEEEeeCC-CCCC-----CchhhcCCCCccEEEeecCCCCC-----cchhhcCCCCCcEEEeeCCCCCC-
Q 012082 221 PVSIGKLKDVTELNLSEN-RIMA-----LPSSIAGIKTLKKLDIHSNQLIN-----LPDSFGDLINLIDLDLHANRLKT- 288 (471)
Q Consensus 221 ~~~~~~l~~L~~L~L~~~-~~~~-----l~~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~~- 288 (471)
...+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.. +...+...++|++|+|++|.|..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344555566666666666 5542 23344555555666665555541 23334444555555555555541
Q ss_pred ----cchhhhCCCCCcEEec--CCCCCC
Q 012082 289 ----LPATFGNLINLMNLDL--GSNEFT 310 (471)
Q Consensus 289 ----lp~~l~~l~~L~~L~l--~~~~l~ 310 (471)
+...+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2334444444555555 444443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.60 E-value=2.8e-06 Score=84.81 Aligned_cols=83 Identities=10% Similarity=0.216 Sum_probs=47.7
Q ss_pred hhcCCCCCccEEEeeCCC---CCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhC
Q 012082 222 VSIGKLKDVTELNLSENR---IMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGN 295 (471)
Q Consensus 222 ~~~~~l~~L~~L~L~~~~---~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~ 295 (471)
.++.+|.+|+.+.+..+. +..+. .+|.++..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++ ..+..
T Consensus 81 ~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~ 158 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSY 158 (394)
T ss_dssp TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred HHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceec
Confidence 446677788888776653 33332 34666667776665443 33343 34566777777777543 33332 34566
Q ss_pred CCCCcEEecCC
Q 012082 296 LINLMNLDLGS 306 (471)
Q Consensus 296 l~~L~~L~l~~ 306 (471)
+..|+.+.+..
T Consensus 159 c~~L~~i~~~~ 169 (394)
T 4gt6_A 159 CYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCT
T ss_pred ccccccccccc
Confidence 66666666654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=5.3e-07 Score=90.12 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=114.3
Q ss_pred hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcCccc-------
Q 012082 245 SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHLPDT------- 315 (471)
Q Consensus 245 ~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l~~~------- 315 (471)
..|.++.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+.. .+...
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-EeehhhcccCCC
Confidence 34666777777777543 23332 34666777777776554 44332 3456666666665544321 11222
Q ss_pred ----------------cCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCC
Q 012082 316 ----------------IGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIK 379 (471)
Q Consensus 316 ----------------l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~ 379 (471)
+..+..|+.+.+..+...--...+..+..++.+......+. ...+..+.+|+.+.+..+ +.
T Consensus 233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CC
T ss_pred ceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cc
Confidence 22333444444433321111222334444444444332111 123456677777777543 44
Q ss_pred CCc-hhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEeecCCCCcCchhh
Q 012082 380 GLP-TTIGNLTKLKELDVSFNELESIT-ENLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILPDSF 456 (471)
Q Consensus 380 ~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l 456 (471)
.++ ..+.++.+|+.++|..+ ++.+. .++.++.+|+.+.+..+ +..++. .+..|++|+.++|..+ ++.+..+|
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F 384 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS---LRKIGANAFQGCINLKKVELPKR-LEQYRYDF 384 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT---CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGB
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc---ccEehHHHhhCCCCCCEEEECCC-CEEhhhee
Confidence 443 45677788888887643 55554 34566778888888654 444433 5677888888888643 45555667
Q ss_pred hcCCCCcEEE
Q 012082 457 RLLSKLRVFR 466 (471)
Q Consensus 457 ~~L~~L~~L~ 466 (471)
.+|++|+.++
T Consensus 385 ~~c~~L~~IK 394 (394)
T 4fs7_A 385 EDTTKFKWIK 394 (394)
T ss_dssp CTTCEEEEEC
T ss_pred cCCCCCcEEC
Confidence 7888777653
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=2.3e-08 Score=89.09 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=62.5
Q ss_pred hhhcCCCCccEEEeecC-CCC-----CcchhhcCCCCCcEEEeeCCCCC-----CcchhhhCCCCCcEEecCCCCCCc--
Q 012082 245 SSIAGIKTLKKLDIHSN-QLI-----NLPDSFGDLINLIDLDLHANRLK-----TLPATFGNLINLMNLDLGSNEFTH-- 311 (471)
Q Consensus 245 ~~i~~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~l~~~~l~~-- 311 (471)
..+...++|++|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44566677777777777 665 23455566667777777777665 234445555666666666666652
Q ss_pred ---CccccCCCCCCCEEEe--eCCCCCC-----cccccCCCCCCcEEEccCCCC
Q 012082 312 ---LPDTIGCLTSLKTLNV--ETNELED-----LPYTIGNCSSLTELRLDFNQL 355 (471)
Q Consensus 312 ---l~~~l~~l~~L~~L~l--~~~~l~~-----l~~~l~~l~~L~~L~l~~~~l 355 (471)
+...+...++|++|++ ++|.++. +...+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3444445555555555 4455442 223333444455555554443
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.53 E-value=2.4e-06 Score=85.31 Aligned_cols=251 Identities=12% Similarity=0.112 Sum_probs=149.5
Q ss_pred CCcEEEEecCCCCCcccccc-hhcCCCCCccEEEeeCCCCCCC-chhhcCCCCccEEEeecCCCCCc-chhhcCCCCCcE
Q 012082 202 TGAVVLDLRGKLTDQIEWLP-VSIGKLKDVTELNLSENRIMAL-PSSIAGIKTLKKLDIHSNQLINL-PDSFGDLINLID 278 (471)
Q Consensus 202 ~~l~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~l-~~~i~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~ 278 (471)
..++.+++... +..++ ..+..+..|+.+.+..+ +..+ ...|.++..+...... .+..+ ...|.+|.+|+.
T Consensus 94 ~~L~~i~lp~~----l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~ 166 (394)
T 4fs7_A 94 SKLEIINIPDS----VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEY 166 (394)
T ss_dssp TTCCEECCCTT----CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred CCCcEEEeCCC----ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCc--cccccchhhhcccCCCcE
Confidence 45666666442 22222 34667778887766543 3332 2345555443333222 22223 346889999999
Q ss_pred EEeeCCCCCCcc-hhhhCCCCCcEEecCCCCCCcC-ccccCCCCCCCEEEeeCCCCCCcccccCCCCCCcEEEc------
Q 012082 279 LDLHANRLKTLP-ATFGNLINLMNLDLGSNEFTHL-PDTIGCLTSLKTLNVETNELEDLPYTIGNCSSLTELRL------ 350 (471)
Q Consensus 279 L~L~~~~l~~lp-~~l~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l------ 350 (471)
+.+..+ +..++ ..|.++.+|+.+.+..+ ++.+ ...+..+..|+.+.+..+. ..+......+.+|+.+.+
T Consensus 167 i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~~~ 243 (394)
T 4fs7_A 167 VSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDSFTE 243 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTTCCE
T ss_pred EecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCceEEECCCcee
Confidence 999765 34444 46889999999999776 4433 2345566677766654432 112222233344444444
Q ss_pred -----------------cCCCCCcchhhhCCCCCCcEEEeecCCCCCCchhccCCCCCcEEEeeCCCCCcch-hhhcCCC
Q 012082 351 -----------------DFNQLRALPEAIGKLECLEILTLHYNRIKGLPTTIGNLTKLKELDVSFNELESIT-ENLCFAV 412 (471)
Q Consensus 351 -----------------~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~ 412 (471)
..+...--...+..+..++.+....+.+.. ..+..+.+|+.+.+..+ +..+. .++..+.
T Consensus 244 i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 244 LGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp ECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCC
Confidence 332221111223344455544443332211 35567888999988754 55554 3466788
Q ss_pred CCcEEEccCCcCCCCccc-hhccCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEccC
Q 012082 413 SLKKLNVGNNFADLRALP-RSIGNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAMR 469 (471)
Q Consensus 413 ~L~~L~L~~n~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~~ 469 (471)
+|+.+.+..+ +..++ ..+..|.+|+.++|..+ ++.+. .+|.+|++|+.+.+..
T Consensus 321 ~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 321 SLVSIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 9999999654 55664 35788999999999766 77665 6899999999998754
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.50 E-value=4.5e-06 Score=83.29 Aligned_cols=257 Identities=11% Similarity=0.192 Sum_probs=128.7
Q ss_pred CCCcEEEEecCCCCCcccccc-hhcCCCCCccEEEeeCCCCCCCc-hhhcCCCCccEEEeecCCCCCcc-hhhcCCCCCc
Q 012082 201 KTGAVVLDLRGKLTDQIEWLP-VSIGKLKDVTELNLSENRIMALP-SSIAGIKTLKKLDIHSNQLINLP-DSFGDLINLI 277 (471)
Q Consensus 201 ~~~l~~L~l~~~~~~~~~~l~-~~~~~l~~L~~L~L~~~~~~~l~-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~ 277 (471)
...++.+.+.......+..+. ..+..+..|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++ ..+..+..|+
T Consensus 86 C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~ 163 (394)
T 4gt6_A 86 CTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLH 163 (394)
T ss_dssp CTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred CccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccc
Confidence 356667766554333333332 34556666766655443 33332 44677777887777543 33332 3466677777
Q ss_pred EEEeeCCCCCCcchhhhCCCCCcEEecCCCCCCcCccccCCCCCCCEEEeeCCCCC------------------------
Q 012082 278 DLDLHANRLKTLPATFGNLINLMNLDLGSNEFTHLPDTIGCLTSLKTLNVETNELE------------------------ 333 (471)
Q Consensus 278 ~L~L~~~~l~~lp~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~------------------------ 333 (471)
.+.+..+ +..+....-...+|+.+.+..+...--...+..+.++...........
T Consensus 164 ~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T 4gt6_A 164 TVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQR 242 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTC
T ss_pred cccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccccccc
Confidence 7777553 343333222334566666554322111223333444444332221111
Q ss_pred ------------Cc-ccccCCCCCCcEEEccCCCCCcchhhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCC
Q 012082 334 ------------DL-PYTIGNCSSLTELRLDFNQLRALPEAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFN 399 (471)
Q Consensus 334 ------------~l-~~~l~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n 399 (471)
.+ ...+..|.+|+.+.+..+...--...+..+.+|+.+.+. +.+..++ ..+.+|.+|+.+.|..+
T Consensus 243 ~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 243 EDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG 321 (394)
T ss_dssp CCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc
Confidence 11 123445666666666443222112244566677776664 3344443 45666777777777643
Q ss_pred CCCcch-hhhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEeecCCCCcCchhhhcCCCCcEEEc
Q 012082 400 ELESIT-ENLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILPDSFRLLSKLRVFRA 467 (471)
Q Consensus 400 ~l~~l~-~~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~l~~L~~L~~L~l 467 (471)
++.+. .++.++.+|+.+.+..+ +..+.. .+..|.+|+.+++.++... ...+..+..|+.+.+
T Consensus 322 -v~~I~~~aF~~C~~L~~i~ip~s---v~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 322 -ITQILDDAFAGCEQLERIAIPSS---VTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPV 385 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEEECTT---CCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC-----
T ss_pred -ccEehHhHhhCCCCCCEEEECcc---cCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEe
Confidence 44443 34556677777777543 344432 4666777777777665322 134556666666554
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=0.00036 Score=68.83 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=84.3
Q ss_pred cCCCCCCcEEEccCCCCCcch-hhhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcEEEeeCCCCCcch-hhhcCCCCCc
Q 012082 339 IGNCSSLTELRLDFNQLRALP-EAIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKELDVSFNELESIT-ENLCFAVSLK 415 (471)
Q Consensus 339 l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~-~~l~~~~~L~ 415 (471)
...+.+|+.+.+..+ +..+. ..+..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..++ ..+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 344556666666433 33333 24567778888887654 44433 56677888999988644 55454 3466788999
Q ss_pred EEEccCCcCCCCccch-hccCCCCccEEEeecCCCCcCc-hhhhcCCCCcEEEcc
Q 012082 416 KLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILP-DSFRLLSKLRVFRAM 468 (471)
Q Consensus 416 ~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~~L~l~ 468 (471)
.+.+.++ .+..++. .+..|.+|+.+.|.. +++.+. .+|.+|.+|+.+.+.
T Consensus 290 ~i~l~~~--~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNS--AIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccc--ccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 9999766 4556643 577889999999964 477665 579999999988764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=0.00041 Score=68.43 Aligned_cols=140 Identities=14% Similarity=0.240 Sum_probs=97.6
Q ss_pred CCCCCCCEEEeeCCCCCCc-ccccCCCCCCcEEEccCCCCCcchh-hhCCCCCCcEEEeecCCCCCCc-hhccCCCCCcE
Q 012082 317 GCLTSLKTLNVETNELEDL-PYTIGNCSSLTELRLDFNQLRALPE-AIGKLECLEILTLHYNRIKGLP-TTIGNLTKLKE 393 (471)
Q Consensus 317 ~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~ 393 (471)
..+.+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+.. ++..+.+|+.+.+..+ +..++ ..+..+++|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34455666655433 2333 234567889999998764 555544 4667889999988643 55544 56788999999
Q ss_pred EEeeCCCCCcchh-hhcCCCCCcEEEccCCcCCCCccch-hccCCCCccEEEeecCCCCcCc-hhhhcCCCCc
Q 012082 394 LDVSFNELESITE-NLCFAVSLKKLNVGNNFADLRALPR-SIGNLEMLEQLDISDDQIRILP-DSFRLLSKLR 463 (471)
Q Consensus 394 L~L~~n~l~~l~~-~l~~~~~L~~L~L~~n~~~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp-~~l~~L~~L~ 463 (471)
+.+.++.++.++. .+.++.+|+.+.|..+ +..+.. .+..|.+|+.+.|..+ ++.+. .+|.+++.++
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA---LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCCc
Confidence 9999888887754 5667899999999654 566654 5788999999988654 66554 5677776544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.94 E-value=2e-06 Score=80.76 Aligned_cols=61 Identities=28% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCCCccEEEeecCCCCCcc---hhhcCCCCCcEEEeeCCCCCCcchhhhCCC--CCcEEecCCCCCC
Q 012082 249 GIKTLKKLDIHSNQLINLP---DSFGDLINLIDLDLHANRLKTLPATFGNLI--NLMNLDLGSNEFT 310 (471)
Q Consensus 249 ~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~l~~lp~~l~~l~--~L~~L~l~~~~l~ 310 (471)
++++|++|+|++|.++.++ ..++.+++|++|+|++|.+..+ ..+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 4455555566555555432 3344555555555555555543 1222222 5555555555544
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=5.2e-05 Score=66.19 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=52.7
Q ss_pred CCcEEEeecCCCCCC-chhccCCCCCcEEEeeCCC-CCc-chhhhcCC----CCCcEEEccCCc-CCCCccchhccCCCC
Q 012082 367 CLEILTLHYNRIKGL-PTTIGNLTKLKELDVSFNE-LES-ITENLCFA----VSLKKLNVGNNF-ADLRALPRSIGNLEM 438 (471)
Q Consensus 367 ~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~L~~n~-l~~-l~~~l~~~----~~L~~L~L~~n~-~~l~~lp~~l~~l~~ 438 (471)
+|+.|++++|.+++. ...+..+++|+.|+|++|. +++ -...+... ++|++|+|++|. +.-..+ ..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 566666666666552 1345666777777777764 442 12233332 367777777763 111122 34566777
Q ss_pred ccEEEeecC-CCCcCc----hhhhcCCCCcE
Q 012082 439 LEQLDISDD-QIRILP----DSFRLLSKLRV 464 (471)
Q Consensus 439 L~~L~L~~n-~l~~lp----~~l~~L~~L~~ 464 (471)
|++|+|++| ++++.- .--..+|++++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 777777775 355321 11235666554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=3e-05 Score=72.71 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=63.3
Q ss_pred CCCCCccEEEeeCCCCCCCc---hhhcCCCCccEEEeecCCCCCcchhhcCCC--CCcEEEeeCCCCCC-cc-------h
Q 012082 225 GKLKDVTELNLSENRIMALP---SSIAGIKTLKKLDIHSNQLINLPDSFGDLI--NLIDLDLHANRLKT-LP-------A 291 (471)
Q Consensus 225 ~~l~~L~~L~L~~~~~~~l~---~~i~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~l~~-lp-------~ 291 (471)
.+++.|++|+|++|.+..++ ..+..+++|++|+|++|.+..+. .+..+. +|++|+|++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46889999999999998754 56678999999999999999773 344444 99999999999873 43 2
Q ss_pred hhhCCCCCcEEec
Q 012082 292 TFGNLINLMNLDL 304 (471)
Q Consensus 292 ~l~~l~~L~~L~l 304 (471)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4678889988874
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=5e-05 Score=67.58 Aligned_cols=90 Identities=22% Similarity=0.176 Sum_probs=40.8
Q ss_pred hhhhCCCCCCcEEEeecCCCCC-----CchhccCCCCCcEEEeeCCCCC-----cchhhhcCCCCCcEEEccCCcC-CCC
Q 012082 359 PEAIGKLECLEILTLHYNRIKG-----LPTTIGNLTKLKELDVSFNELE-----SITENLCFAVSLKKLNVGNNFA-DLR 427 (471)
Q Consensus 359 ~~~l~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~L~~n~l~-----~l~~~l~~~~~L~~L~L~~n~~-~l~ 427 (471)
.+.+...+.|+.|+|++|.+.+ +...+...+.|+.|+|++|.++ .+...+.....|+.|+|++|.. .+.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 3344444455555555555443 2334444455555555555554 2233444444555555543311 111
Q ss_pred -----ccchhccCCCCccEEEeecCC
Q 012082 428 -----ALPRSIGNLEMLEQLDISDDQ 448 (471)
Q Consensus 428 -----~lp~~l~~l~~L~~L~L~~n~ 448 (471)
.+...+...+.|..|+++.+.
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 122333445555555555443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=0.00011 Score=65.28 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=63.8
Q ss_pred CCCCCCEEEeeCC-CCC-----CcccccCCCCCCcEEEccCCCCC-----cchhhhCCCCCCcEEEeecCCCCC-----C
Q 012082 318 CLTSLKTLNVETN-ELE-----DLPYTIGNCSSLTELRLDFNQLR-----ALPEAIGKLECLEILTLHYNRIKG-----L 381 (471)
Q Consensus 318 ~l~~L~~L~l~~~-~l~-----~l~~~l~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~l~~-----l 381 (471)
.-+.|++|+++++ .+. .+...+..-+.|+.|++++|.++ .+.+.+...+.|++|+|++|.|.. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3344555555543 443 12344555566666666666663 445556666777777777777766 4
Q ss_pred chhccCCCCCcEEEeeCC---CCC-----cchhhhcCCCCCcEEEccCC
Q 012082 382 PTTIGNLTKLKELDVSFN---ELE-----SITENLCFAVSLKKLNVGNN 422 (471)
Q Consensus 382 ~~~l~~l~~L~~L~L~~n---~l~-----~l~~~l~~~~~L~~L~L~~n 422 (471)
...+...+.|+.|+|++| .+. .+...+...++|++|+++.|
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 456666667777777654 333 24455666777888887665
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.45 E-value=0.00017 Score=62.86 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=63.3
Q ss_pred CchhccCCCCCcEEEeeCCCCCcc-hhhhcCCCCCcEEEccCCcCCCCccchhccCC----CCccEEEeecC-CCCc-Cc
Q 012082 381 LPTTIGNLTKLKELDVSFNELESI-TENLCFAVSLKKLNVGNNFADLRALPRSIGNL----EMLEQLDISDD-QIRI-LP 453 (471)
Q Consensus 381 l~~~l~~l~~L~~L~L~~n~l~~l-~~~l~~~~~L~~L~L~~n~~~l~~lp~~l~~l----~~L~~L~L~~n-~l~~-lp 453 (471)
+|.......+|+.|++++|.++.. ...+..+++|++|+|++|..-.+.--..++.+ ++|++|+|++| ++++ --
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 344333345799999999998743 34567899999999999842111112345553 57999999997 5883 22
Q ss_pred hhhhcCCCCcEEEccCC
Q 012082 454 DSFRLLSKLRVFRAMRL 470 (471)
Q Consensus 454 ~~l~~L~~L~~L~l~~l 470 (471)
..+..+++|+.|++.+.
T Consensus 133 ~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 45788999999998763
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.93 E-value=0.011 Score=48.62 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=16.9
Q ss_pred CCcEEEeeCCCCCCcch-hhhCCCCCcEEecCCCCC
Q 012082 275 NLIDLDLHANRLKTLPA-TFGNLINLMNLDLGSNEF 309 (471)
Q Consensus 275 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~l~~~~l 309 (471)
+|++|+|++|+|+.+|. .|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34555555555554443 234455555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.22 E-value=0.025 Score=46.51 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=42.5
Q ss_pred cEEEeeCCCCC--CCchhhcCCCCccEEEeecCCCCCcch-hhcCCCCCcEEEeeCCCCC
Q 012082 231 TELNLSENRIM--ALPSSIAGIKTLKKLDIHSNQLINLPD-SFGDLINLIDLDLHANRLK 287 (471)
Q Consensus 231 ~~L~L~~~~~~--~l~~~i~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~ 287 (471)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|. .|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888877 7775443 368899999999988864 4678889999999988765
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=73.66 E-value=1 Score=46.38 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=26.4
Q ss_pred cchhhhhhhccccceecCCCceEEehhHhHHHHhhhc
Q 012082 137 GKIEKECVITDETLVKTREDGEIKKDGLKDLVKSASK 173 (471)
Q Consensus 137 ~y~~eli~r~~~~~~~~~~~g~i~~~~lhdli~~~s~ 173 (471)
+|+++|+.+++++++... .+..|+|||++|..+.
T Consensus 432 ~~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~ 465 (549)
T 2a5y_B 432 DRLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLK 465 (549)
T ss_dssp HHHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCeeEecCC---CceEEEeChHHHHHHH
Confidence 399999999999987653 4557888888885443
No 166
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=64.22 E-value=3.2 Score=24.27 Aligned_cols=10 Identities=50% Similarity=1.162 Sum_probs=8.7
Q ss_pred CCCCCChHHH
Q 012082 30 LPPRPSIEQV 39 (471)
Q Consensus 30 l~~rp~~~~v 39 (471)
.||||+.|++
T Consensus 7 vPpRPs~~lI 16 (32)
T 1k4u_P 7 VPPRPSADLI 16 (32)
T ss_dssp CCCCCCHHHH
T ss_pred CCCCCCHHHH
Confidence 5999999986
No 167
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=53.16 E-value=30 Score=27.88 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHhhhchHHhhhhHHHhhhcCCCCChHHHHHHHH
Q 012082 34 PSIEQVEAAMSVLQTVDTEEQTKLDEITKQEKPRDVSEDLFSVLQ 78 (471)
Q Consensus 34 p~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 78 (471)
|+.+|+|.-|..+..+|.+... ...+-.+|.+|..|||
T Consensus 3 ~~~~Ele~lr~aL~~AE~eLe~-------~~~~w~~p~~Lq~wLq 40 (136)
T 3ter_A 3 VNHTEMENLRVQLEEAERRLEA-------NSNGSQAPLALQPLLR 40 (136)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC------------CCCCTTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHh-------cCCCcCCCHHHHHHHH
Confidence 7899999999999999976542 1235567778888885
No 168
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=34.26 E-value=34 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCCCCChHHHHHHHHHHhhhch
Q 012082 20 VEEITRLYRSLPPRPSIEQVEAAMSVLQTVDT 51 (471)
Q Consensus 20 ~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~ 51 (471)
.+|+..+++++|..|+.++++++...+..++.
T Consensus 33 ~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d~ 64 (86)
T 1j7q_A 33 VSDTMDMLTKLGQTYTKRETEAIMKEARGPKG 64 (86)
T ss_dssp HHHHHHHHHHTSCCCSHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Confidence 47888888889988888885444455554443
No 169
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=29.25 E-value=52 Score=21.64 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=22.2
Q ss_pred HHHHHHHhhcCCCCCChHHHHHHHHHH
Q 012082 20 VEEITRLYRSLPPRPSIEQVEAAMSVL 46 (471)
Q Consensus 20 ~~~~~~~~~~l~~rp~~~~v~~~~~~~ 46 (471)
.+|++++++.++..++.+++++.-..+
T Consensus 20 ~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 20 LDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 578999999999999999888766554
No 170
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=25.41 E-value=2.7e+02 Score=22.50 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhchHHhhhhHHHhh
Q 012082 16 FVETVEEITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQTKLDEITK 62 (471)
Q Consensus 16 ~~~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~~~l~~~~~ 62 (471)
.-|+||.+|.=--.=|.||+...++.-+.-|..+.++...--+-|..
T Consensus 33 LQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 33 LQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888774444499999999999999999988887754444443
No 171
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=24.02 E-value=27 Score=18.99 Aligned_cols=7 Identities=71% Similarity=1.569 Sum_probs=4.8
Q ss_pred cCCCCCC
Q 012082 29 SLPPRPS 35 (471)
Q Consensus 29 ~l~~rp~ 35 (471)
.|||||.
T Consensus 9 ~LPpRPa 15 (26)
T 1wa7_B 9 PLPPRPA 15 (26)
T ss_dssp CCCCCTT
T ss_pred CCCCCcc
Confidence 3778875
No 172
>2ov9_A Hypothetical protein; rhodococcus SP. RHA1, RHA08564, structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Rhodococcus SP} SCOP: d.38.1.5
Probab=23.41 E-value=57 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHHHhhcC-CCCCChHHHHHHHHHHhhhchHHh
Q 012082 9 KHSPSSAFVETVEEITRLYRSL-PPRPSIEQVEAAMSVLQTVDTEEQ 54 (471)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l-~~rp~~~~v~~~~~~~~~~~~~~~ 54 (471)
+.++.+.+.+.++++|++-.-. ...|+.+++.+|.+.++++...+.
T Consensus 20 ~~~~~~~~~~~~~~~r~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~ 66 (216)
T 2ov9_A 20 SPPDGSAVDRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLE 66 (216)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 4467778888888888876544 678888888888888776665444
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.09 E-value=1.2e+02 Score=22.82 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=14.5
Q ss_pred hcCCCCccEEEeecCCCCCcc-hhhcCCCCCcEEEeeC
Q 012082 247 IAGIKTLKKLDIHSNQLINLP-DSFGDLINLIDLDLHA 283 (471)
Q Consensus 247 i~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~ 283 (471)
|.+|..|+.+.+..+ ++.+. ..|.+|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 444444444444432 22221 2244444444444433
No 174
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=21.87 E-value=84 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCCCChHHHHHHHHHH
Q 012082 19 TVEEITRLYRSLPPRPSIEQVEAAMSVL 46 (471)
Q Consensus 19 ~~~~~~~~~~~l~~rp~~~~v~~~~~~~ 46 (471)
..+|++++++.++..++.++|++....+
T Consensus 41 ~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 41 TFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp EHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3589999999999999999888766554
No 175
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=21.61 E-value=75 Score=25.95 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCCCCChHHHHH
Q 012082 20 VEEITRLYRSLPPRPSIEQVEA 41 (471)
Q Consensus 20 ~~~~~~~~~~l~~rp~~~~v~~ 41 (471)
++|+..++|+||-.|+-+||++
T Consensus 30 ~~El~~~lr~lG~~~t~~el~~ 51 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPTEAQVHQ 51 (159)
T ss_dssp GGGHHHHHHHTTCCCCHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHH
Confidence 4688889999999999888875
No 176
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=21.43 E-value=2.4e+02 Score=22.56 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhchHHh
Q 012082 18 ETVEEITRLYRSLPPRPSIEQVEAAMSVLQTVDTEEQ 54 (471)
Q Consensus 18 ~~~~~~~~~~~~l~~rp~~~~v~~~~~~~~~~~~~~~ 54 (471)
-+|.|+..+ .|+||..|+|-.|-..+...-...+
T Consensus 54 ~AV~el~aL---fp~~p~~etvr~sL~~L~~~a~~Lq 87 (135)
T 2jx0_A 54 LAVTEMASL---FPKRPALEPVRSSLRLLNASAYRLQ 87 (135)
T ss_dssp HHHHHHHHT---SCSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCCCchHHHHHHHHHHHHHHHHH
Confidence 355555554 4888888888777666655555454
No 177
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.70 E-value=49 Score=24.88 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=13.2
Q ss_pred HHHHHHhhcCCCCCChHHHHHHH
Q 012082 21 EEITRLYRSLPPRPSIEQVEAAM 43 (471)
Q Consensus 21 ~~~~~~~~~l~~rp~~~~v~~~~ 43 (471)
+|++.+++++|..++.+||++..
T Consensus 56 ~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 56 QELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp HHHHHHHHHHTCCCCTTTHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH
Confidence 45556666666666666655443
No 178
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.25 E-value=1.2e+02 Score=22.73 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=23.6
Q ss_pred CCCCcc-hhhcCCCCCcEEEeeCCCCCCc-chhhhCCCCCcEEecCCC
Q 012082 262 QLINLP-DSFGDLINLIDLDLHANRLKTL-PATFGNLINLMNLDLGSN 307 (471)
Q Consensus 262 ~i~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~l~~~ 307 (471)
.++.+. ..|.+|.+|+.+.+-.+ ++.+ ...|.+|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344442 34566666666666553 3333 234566666666666543
No 179
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=20.05 E-value=87 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCCChHHHHHHHHH
Q 012082 20 VEEITRLYRSLPPRPSIEQVEAAMSV 45 (471)
Q Consensus 20 ~~~~~~~~~~l~~rp~~~~v~~~~~~ 45 (471)
.+|++++++.++..++.++|+.....
T Consensus 25 ~~el~~~l~~~~~~~~~~~~~~~~~~ 50 (71)
T 2b1u_A 25 VDELRRAMAGLGQPLPQEELDAMIRE 50 (71)
T ss_dssp HHHHHHHGGGTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 57889999999988888887765544
Done!