BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012083
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 149/478 (31%), Positives = 238/478 (49%), Gaps = 37/478 (7%)
Query: 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQL 78
HV+++ +P QGH+ L KLA L +TFV TE+ +R+ +SR +F D
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD---- 65
Query: 79 VRIVPLPDGLEPE----DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIAD 134
+PDGL P D +D + +S+ K EL+ ++N +TC+++D
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 135 VTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIIS-SDGIVIKN----EKI 189
+ +Q A + EL ++S+ L +M+ F+E GII D + N K+
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 190 ELSPYLPAASPAEFL-WNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSA-- 246
+ P L + + + NP+ +M ++ + + IL F+EL
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPN--DIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243
Query: 247 --NKILPSIIPVGPLIANGQPT----------GNFWSEDLTCLSWLDKQPPGSVIYAAFG 294
+ +PSI P+GPL + + T N W ED CL WL+ + PGSV+Y FG
Sbjct: 244 ALSSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 295 SISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQ 354
S + ++ +Q E A GL + FL +RP + G S ++AD G + W PQ
Sbjct: 304 STTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQ 363
Query: 355 EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414
+KVL HPS+ +LTHCGWNST E I GVP LCWP+ D IC++W+IG +E D
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG--MEID 421
Query: 415 DNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQI 469
N + R E+ + ++E+++ D +++ A++LK+ A+++ G S NL IK +
Sbjct: 422 TN--VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDV 477
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 136/471 (28%), Positives = 226/471 (47%), Gaps = 45/471 (9%)
Query: 19 HVLLVSFPAQGHVASLMKLAHRLADCR-IKVTFVTTEFICERIKESRQLGSFSEMGDAQQ 77
HV ++ P GH+ L++ A RL + VTFV E Q + +
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA---GEGPPSKAQRTVLDSLPSSIS 64
Query: 78 LVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKI-TCVIADVT 136
V + P+ D + + E++++ ++++ P EL + + E ++ T ++ D+
Sbjct: 65 SVFLPPV-DLTDLSSSTRIESRISLTVTRSNP----ELRKVFDSFVEGGRLPTALVVDLF 119
Query: 137 FGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLP 196
A VA + + Y + +L+ +++PK E +S + + E + L +P
Sbjct: 120 GTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET--VSCEFREL-TEPLMLPGCVP 176
Query: 197 AASPAEFLWNCPGNPS--LQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL---- 250
A +FL +P+ + ++++ + + ++ IL F EL P+A K L
Sbjct: 177 VAG-KDFL-----DPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPG 230
Query: 251 ---PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNEL 307
P + PVGPL+ G+ +E+ CL WLD QP GSV+Y +FGS L+ +Q NEL
Sbjct: 231 LDKPPVYPVGPLVNIGKQEAK-QTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNEL 289
Query: 308 ALGLELAGQPFLCGVR-PGFINGSS-----------TNNPDGLVAKVADFGKMVK-WAPQ 354
ALGL + Q FL +R P I SS T P G + + G ++ WAPQ
Sbjct: 290 ALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQ 349
Query: 355 EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414
+VLAHPS +LTHCGWNST+E + G+P + WP + + +D + L
Sbjct: 350 AQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG 409
Query: 415 DNGIIGRHEIKRKVDELLSNDV---VRKNALKLKELAQKSVTKEGSSSKNL 462
D+G++ R E+ R V L+ + VR +LKE A + + +G+S+K L
Sbjct: 410 DDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 173/358 (48%), Gaps = 22/358 (6%)
Query: 123 EEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGI 182
E ++C++AD +A +AA++ + +T+ P L+ + I + E +S
Sbjct: 108 ETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSG--- 164
Query: 183 VIKNEKIELSPYLPAASPAEF--LWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFH 240
I+ + EL ++P S F L +L +L + ++ + Q + + + F
Sbjct: 165 -IQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFE 223
Query: 241 ELAPSANKILPS----IIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSI 296
EL S L S + +GP P CL WL ++ P SV+Y +FG++
Sbjct: 224 ELDDSLTNDLKSKLKTYLNIGPFNLITPPP--VVPNTTGCLQWLKERKPTSVVYISFGTV 281
Query: 297 SKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEK 356
+ + L+ LE + PF+ +R + + + P+G + K +G +V WAPQ +
Sbjct: 282 TTPPPAEVVALSEALEASRVPFIWSLR----DKARVHLPEGFLEKTRGYGMVVPWAPQAE 337
Query: 357 VLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDN 416
VLAH +V ++THCGWNS E ++ GVP +C P+ D + D +IG+ +E
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE---G 394
Query: 417 GIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471
G+ + + D++LS + +R+N L+E A ++V +GSS++N + +++
Sbjct: 395 GVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/480 (24%), Positives = 218/480 (45%), Gaps = 45/480 (9%)
Query: 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLA--DCRIKVTFVTTEFICERIKESRQLGSFS 70
+NK N ++ + P GH+AS ++ A L D + +T +F +S
Sbjct: 6 INK-NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSY----IK 60
Query: 71 EMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEE---DEK 127
+ +Q ++++ LP+ +EP ++ +S + +LE LI + + K
Sbjct: 61 SVLASQPQIQLIDLPE-VEPP-----PQELLKSPEFYILTFLESLIPHVKATIKTILSNK 114
Query: 128 ITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIP-KFIEAGIISSDGIVIKN 186
+ ++ D + V + + TS G L++++++ + IE SD ++
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD----RD 170
Query: 187 EKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSA 246
++ P + P+ L + N + + + + + I+ F +L S+
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKL---AERFRDTKGIIVNTFSDLEQSS 227
Query: 247 -------NKILPSIIPVGPLI-ANGQPTGNF-WSEDLTCLSWLDKQPPGSVIYAAFGSIS 297
++ +P I VGPL+ GQP ++ L WLD+QP SV++ FGS+
Sbjct: 228 IDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMG 287
Query: 298 -KLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLV--AKVADFGKMVKWAPQ 354
Q E+ALGL+ +G FL + P+G + ++ G + WAPQ
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSN-----SAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 355 EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414
+VLAH ++ +++HCGWNS +E + GVP L WP + + +W +GL L D
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 415 ---DNGIIGRHEIKRKVDELLSND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470
+ ++ EI++ + +L+ D +V K ++KE+++ +V GSS ++ I IT
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/480 (24%), Positives = 218/480 (45%), Gaps = 45/480 (9%)
Query: 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLA--DCRIKVTFVTTEFICERIKESRQLGSFS 70
+NK N ++ + P GH+AS ++ A L D + +T +F +S
Sbjct: 6 INK-NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSY----IK 60
Query: 71 EMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEE---DEK 127
+ +Q ++++ LP+ +EP ++ +S + +LE LI + + K
Sbjct: 61 SVLASQPQIQLIDLPE-VEPP-----PQELLKSPEFYILTFLESLIPHVKATIKTILSNK 114
Query: 128 ITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIP-KFIEAGIISSDGIVIKN 186
+ ++ D + V + + TS G L++++++ + IE SD ++
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSD----RD 170
Query: 187 EKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSA 246
++ P + P+ L + N + + + + + I+ F +L S+
Sbjct: 171 HQLLNIPGISNQVPSNVLPDACFNKDGGYIAYYKL---AERFRDTKGIIVNTFSDLEQSS 227
Query: 247 -------NKILPSIIPVGPLI-ANGQPTGNF-WSEDLTCLSWLDKQPPGSVIYAAFGSIS 297
++ +P I VGPL+ GQP ++ L WLD+QP SV++ FGS+
Sbjct: 228 IDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMG 287
Query: 298 -KLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLV--AKVADFGKMVKWAPQ 354
Q E+ALGL+ +G FL + P+G + ++ G + WAPQ
Sbjct: 288 VSFGPSQIREIALGLKHSGVRFLWSN-----SAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 355 EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414
+VLAH ++ +++HCGWNS +E + GVP L WP + + +W +GL L D
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 415 ---DNGIIGRHEIKRKVDELLSND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470
+ ++ EI++ + +L+ D +V K ++KE+++ +V GSS ++ I IT
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 462
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/487 (24%), Positives = 207/487 (42%), Gaps = 70/487 (14%)
Query: 13 LNKTNV-HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSE 71
+N N+ HV +++FP H A L+ L ++A KVT + FS
Sbjct: 8 MNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVT------FSFFCTTTTNDTLFSR 61
Query: 72 MGDAQQLVRIVPLPDGL-----EPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDE 126
+ ++ + DGL + R+ +++ + ++E + E +
Sbjct: 62 SNEFLPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVA-----ETGK 116
Query: 127 KITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKN 186
ITC++ D F + +A ++ K ++T+ P L + I S + +K+
Sbjct: 117 NITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSL-LTHVYTDLIREKTGSKEVHDVKS 175
Query: 187 EKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELA--- 243
+ PG P L+ ++ I+ D T H++
Sbjct: 176 IDV-----------------LPGFPELKA-----SDLPEGVIKDIDVPFATMLHKMGLEL 213
Query: 244 PSANKI-LPSIIPVGPLIANGQPT--------GNF--------WSEDLTCLSWLDKQPPG 286
P AN + + S + PLI N + G F S++ CL WLD+
Sbjct: 214 PRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENS 273
Query: 287 SVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFG 346
SV+Y +FGS+ + LA LE G PF+ R P G + + G
Sbjct: 274 SVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFR----GDPKEKLPKGFLERTKTKG 329
Query: 347 KMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWK 406
K+V WAPQ ++L H SV +LTH GWNS +E I GVP + P+ D +
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLE 389
Query: 407 IGLWLEPDDNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLE 463
IG+ + DNG++ + IK+ ++ +S++ ++R+ +KLKE A K+V + G+S+ +
Sbjct: 390 IGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFT 446
Query: 464 YFIKQIT 470
I+ +T
Sbjct: 447 TLIQIVT 453
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 286 GSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADF 345
G V+++ +S ++++ N +A L Q L N PD L
Sbjct: 22 GVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF--------DGNKPDTLGLNT--- 70
Query: 346 GKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWP 389
++ KW PQ +L HP ++TH G N E I G+P + P
Sbjct: 71 -RLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIP 113
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 347 KMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHD 393
++ W PQ +L H V + H G +T+ + GVP L +PW D
Sbjct: 295 RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGD 339
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 350 KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWP 389
+W PQ +L S ++TH G STME +S VP + P
Sbjct: 311 QWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVP 348
>pdb|2DFJ|A Chain A, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
pdb|2DFJ|B Chain B, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
Length = 280
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 33/179 (18%)
Query: 117 QKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGI 176
Q + Q +E++K+ A +T W LQ A + ++ +S + P F++A
Sbjct: 105 QPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSD--------SYPFFLDA-- 154
Query: 177 ISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYIN-----VIRQNIEAS 231
+ + SP L F+ N + + F + N +++ E +
Sbjct: 155 ------MYGDMPNNWSPELRGLGRLRFITN-----AFTRMRFCFPNGQLDMYSKESPEEA 203
Query: 232 DRILCTWFHELAPSANKILPSIIPVGPLIANGQP-------TGNFWSEDLTCLSWLDKQ 283
L WF P A + + L G P TG W LTCL W DKQ
Sbjct: 204 PAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGSLTCLRWEDKQ 262
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 349 VKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIG 408
V W P + V P+ + H G ST+ G+S GVP L P G L + D+
Sbjct: 268 VGWTPLDVV--APTCDLLVHHAGGVSTLTGLSAGVPQLLIPKG-SVLEAPARRVADYGAA 324
Query: 409 LWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKE 446
+ L P ++ I EL + D + A L
Sbjct: 325 IALLPGEDST---EAIADSCQELQAKDTYARRAQDLSR 359
>pdb|1G6A|A Chain A, Pse-4 Carbenicillinase, R234k Mutant
Length = 271
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 229 EASDRILCTWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSV 288
E + + L +W + N +L S++P G IA+ G F + +T + W + Q P +
Sbjct: 179 EMNQKKLESWMVNNQVTGN-LLRSVLPAGWNIADKSGAGGFGARSITAVVWSEHQAP--I 235
Query: 289 IYAAFGSISKLSQQQFNE 306
I + + + ++ S ++ N+
Sbjct: 236 IVSIYLAQTQASMEERND 253
>pdb|1G68|A Chain A, Pse-4 Carbenicillinase, Wild Type
Length = 271
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 229 EASDRILCTWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSV 288
E + + L +W + N +L S++P G IA+ G F + +T + W + Q P +
Sbjct: 179 EMNQKKLESWMVNNQVTGN-LLRSVLPAGWNIADRSGAGGFGARSITAVVWSEHQAP--I 235
Query: 289 IYAAFGSISKLSQQQFNE 306
I + + + ++ S ++ N+
Sbjct: 236 IVSIYLAQTQASMEERND 253
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63
H+L + GHV + L LA ++T+VTT + +K +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA 50
>pdb|3NXC|A Chain A, Molecular Mechanism By Which The Escherichia Coli Nucleoid
Occlusion Factor, Slma, Keeps Cytokinesis In Check
Length = 212
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 142 QVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEK 188
++AA + + +A++Y P M ++ +FIE +I+ +++K+EK
Sbjct: 50 KLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEK 96
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 336 DGLVAKVADFGKM--VKWAPQ---EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW 390
D +V + F VKW + EKV P V YL G + V C
Sbjct: 292 DAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGC-AM 350
Query: 391 GHDHLYIKSCICDD--WKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448
GH + + + +I LW PD + G H + +K+DE ++ + K +KL +L
Sbjct: 351 GHPSFVMSNSFTNQVMAQIELWTHPDKYPV-GVHFLPKKLDEAVAEAHLGKLNVKLTKLT 409
Query: 449 QK 450
+K
Sbjct: 410 EK 411
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 336 DGLVAKVADFGKM--VKWAPQ---EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW 390
D +V + F VKW + EKV P V YL G + V C
Sbjct: 292 DAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGC-AM 350
Query: 391 GHDHLYIKSCICDD--WKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448
GH + + + +I LW PD + G H + +K+DE ++ + K +KL +L
Sbjct: 351 GHPSFVMSNSFTNQVMAQIELWTHPDKYPV-GVHFLPKKLDEAVAEAHLGKLNVKLTKLT 409
Query: 449 QK 450
+K
Sbjct: 410 EK 411
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 336 DGLVAKVADFGKM--VKWAPQ---EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW 390
D +V + F VKW + EKV P V YL G + V C
Sbjct: 292 DAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYLLKNGHRIILLAEGRLVNLGC-AM 350
Query: 391 GHDHLYIKSCICDD--WKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448
GH + + + +I LW PD + G H + +K+DE ++ + K +KL +L
Sbjct: 351 GHPSFVMSNSFTNQVMAQIELWTHPDKYPV-GVHFLPKKLDEAVAEAHLGKLNVKLTKLT 409
Query: 449 QK 450
+K
Sbjct: 410 EK 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,213,733
Number of Sequences: 62578
Number of extensions: 604553
Number of successful extensions: 1439
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1401
Number of HSP's gapped (non-prelim): 26
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)