Query 012083
Match_columns 471
No_of_seqs 136 out of 1247
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:27:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012083.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012083hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02562 UDP-glycosyltransfera 100.0 2.7E-68 5.9E-73 525.5 45.6 430 17-470 6-448 (448)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 7.8E-67 1.7E-71 513.5 44.9 431 17-470 7-449 (451)
3 PLN02555 limonoid glucosyltran 100.0 2.9E-66 6.3E-71 511.1 44.4 447 17-471 7-469 (480)
4 PLN02173 UDP-glucosyl transfer 100.0 3.1E-66 6.8E-71 506.7 43.6 424 13-470 1-447 (449)
5 PLN02152 indole-3-acetate beta 100.0 7.2E-66 1.6E-70 505.0 43.6 429 16-470 2-455 (455)
6 PLN02207 UDP-glycosyltransfera 100.0 2E-65 4.4E-70 502.8 44.4 439 16-470 2-464 (468)
7 PLN02554 UDP-glycosyltransfera 100.0 5.3E-65 1.2E-69 507.8 43.0 440 17-470 2-477 (481)
8 PLN02210 UDP-glucosyl transfer 100.0 7.8E-65 1.7E-69 501.4 43.8 428 15-470 6-454 (456)
9 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.5E-64 5.4E-69 499.2 42.9 439 16-471 8-471 (477)
10 PLN02992 coniferyl-alcohol glu 100.0 2.9E-64 6.3E-69 495.5 43.0 429 13-470 1-468 (481)
11 PLN02448 UDP-glycosyltransfera 100.0 8.4E-64 1.8E-68 497.6 43.6 427 17-471 10-457 (459)
12 PLN00164 glucosyltransferase; 100.0 8.9E-64 1.9E-68 497.0 43.1 436 16-470 2-472 (480)
13 PLN03007 UDP-glucosyltransfera 100.0 7.5E-63 1.6E-67 493.1 44.2 443 13-471 1-480 (482)
14 PLN03004 UDP-glycosyltransfera 100.0 3.3E-63 7.2E-68 485.7 40.2 429 17-460 3-450 (451)
15 PLN02764 glycosyltransferase f 100.0 1E-62 2.2E-67 480.2 42.0 419 13-470 1-444 (453)
16 PLN02167 UDP-glycosyltransfera 100.0 9.1E-63 2E-67 491.0 42.2 441 16-470 2-471 (475)
17 PLN03015 UDP-glucosyl transfer 100.0 2.3E-62 5.1E-67 479.0 42.5 434 16-470 2-467 (470)
18 PLN02208 glycosyltransferase f 100.0 1.4E-62 2.9E-67 482.3 40.1 411 17-471 4-439 (442)
19 PLN02670 transferase, transfer 100.0 2.3E-62 5E-67 481.6 40.9 429 17-471 6-465 (472)
20 PLN02534 UDP-glycosyltransfera 100.0 1.6E-61 3.5E-66 477.9 42.1 434 17-470 8-485 (491)
21 PLN00414 glycosyltransferase f 100.0 4.6E-61 1E-65 471.9 40.1 411 16-470 3-439 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.1E-52 6.7E-57 417.1 27.1 402 18-469 21-464 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.5E-51 3.3E-56 419.6 8.2 378 19-451 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.9E-44 4.1E-49 356.2 35.6 374 23-470 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 7E-45 1.5E-49 360.9 24.4 378 18-468 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.6E-42 3.4E-47 338.2 23.9 381 18-469 2-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 5E-42 1.1E-46 349.9 19.8 413 17-450 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 4.3E-26 9.3E-31 219.9 25.9 320 18-443 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 9.2E-25 2E-29 209.9 26.0 307 18-431 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 5.2E-23 1.1E-27 197.3 25.2 307 19-438 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 1E-21 2.2E-26 187.2 28.0 326 18-451 1-338 (357)
32 PRK00726 murG undecaprenyldiph 99.9 4.2E-20 9.1E-25 180.5 26.9 337 18-468 2-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.7E-18 6E-23 167.3 25.9 323 19-446 1-336 (350)
34 TIGR01133 murG undecaprenyldip 99.8 7.9E-17 1.7E-21 156.9 25.5 318 18-445 1-332 (348)
35 COG4671 Predicted glycosyl tra 99.8 3.1E-16 6.6E-21 142.4 25.2 328 17-435 9-366 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.8 5.2E-17 1.1E-21 159.1 21.9 350 18-466 6-383 (385)
37 PRK13609 diacylglycerol glucos 99.7 2.3E-15 5E-20 148.3 26.6 144 284-445 200-349 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 3.3E-15 7.1E-20 139.7 20.5 103 287-400 171-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.7 9.3E-15 2E-19 144.1 23.2 345 18-468 2-374 (380)
40 PRK13608 diacylglycerol glucos 99.6 3.2E-13 6.8E-18 133.2 28.6 146 284-450 200-351 (391)
41 PLN02605 monogalactosyldiacylg 99.5 4.2E-12 9.1E-17 125.0 27.4 149 280-447 200-361 (382)
42 TIGR03492 conserved hypothetic 99.5 4.7E-12 1E-16 124.3 25.8 333 25-442 4-372 (396)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 1E-15 2.2E-20 132.3 -0.9 140 288-438 1-148 (167)
44 cd03814 GT1_like_2 This family 99.5 2.3E-10 5E-15 111.5 31.7 321 28-449 14-347 (364)
45 PF03033 Glyco_transf_28: Glyc 99.5 2.2E-13 4.8E-18 114.0 8.7 126 20-160 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.4 1.1E-09 2.4E-14 110.8 32.5 334 15-447 56-413 (465)
47 cd03818 GT1_ExpC_like This fam 99.3 9.5E-09 2.1E-13 101.9 33.5 91 343-443 280-375 (396)
48 cd03823 GT1_ExpE7_like This fa 99.3 4.7E-09 1E-13 102.0 29.6 89 343-443 242-338 (359)
49 TIGR00236 wecB UDP-N-acetylglu 99.3 5.5E-10 1.2E-14 109.5 21.9 346 18-466 1-362 (365)
50 cd03794 GT1_wbuB_like This fam 99.3 2.4E-09 5.2E-14 105.1 25.5 350 19-448 1-379 (394)
51 COG3980 spsG Spore coat polysa 99.3 4.7E-10 1E-14 99.5 17.5 296 18-448 1-307 (318)
52 PRK05749 3-deoxy-D-manno-octul 99.3 5.7E-09 1.2E-13 104.5 27.9 94 345-448 303-402 (425)
53 cd03808 GT1_cap1E_like This fa 99.3 3E-08 6.5E-13 96.0 32.0 325 19-447 1-342 (359)
54 cd03800 GT1_Sucrose_synthase T 99.3 1E-08 2.3E-13 101.5 29.3 332 27-442 20-376 (398)
55 cd03816 GT1_ALG1_like This fam 99.2 1.1E-08 2.4E-13 101.9 28.8 336 16-441 2-391 (415)
56 cd04962 GT1_like_5 This family 99.2 1.8E-08 3.8E-13 99.0 29.2 89 343-443 252-345 (371)
57 cd03805 GT1_ALG2_like This fam 99.2 1.4E-08 3E-13 100.5 28.7 88 343-443 279-373 (392)
58 cd03817 GT1_UGDG_like This fam 99.2 2.5E-08 5.4E-13 97.3 30.1 83 343-438 258-347 (374)
59 cd03801 GT1_YqgM_like This fam 99.2 4.7E-08 1E-12 94.9 30.5 326 19-446 1-353 (374)
60 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 5.1E-10 1.1E-14 109.6 15.3 136 286-441 198-344 (363)
61 PRK10307 putative glycosyl tra 99.1 1.8E-07 3.9E-12 93.3 32.2 90 344-443 284-382 (412)
62 cd03825 GT1_wcfI_like This fam 99.1 5.5E-08 1.2E-12 95.0 27.6 87 342-440 242-336 (365)
63 cd03798 GT1_wlbH_like This fam 99.1 2.7E-07 5.7E-12 89.8 30.0 316 27-437 13-347 (377)
64 cd03820 GT1_amsD_like This fam 99.1 2.7E-07 5.8E-12 88.9 29.0 96 343-450 234-335 (348)
65 cd03795 GT1_like_4 This family 99.1 9.5E-08 2.1E-12 93.0 25.8 139 287-444 191-342 (357)
66 TIGR03449 mycothiol_MshA UDP-N 99.1 4E-07 8.7E-12 90.6 30.6 93 343-447 282-381 (405)
67 cd03821 GT1_Bme6_like This fam 99.0 6.9E-07 1.5E-11 87.1 30.3 92 343-448 261-359 (375)
68 PF04007 DUF354: Protein of un 99.0 3.2E-07 7E-12 87.0 25.9 300 18-432 1-308 (335)
69 TIGR02468 sucrsPsyn_pln sucros 99.0 9.5E-07 2.1E-11 94.3 31.2 379 16-447 168-650 (1050)
70 cd05844 GT1_like_7 Glycosyltra 99.0 4.8E-07 1E-11 88.6 26.5 89 343-443 244-345 (367)
71 cd03802 GT1_AviGT4_like This f 99.0 1.4E-07 3.1E-12 91.1 22.3 130 288-435 172-309 (335)
72 cd03822 GT1_ecORF704_like This 98.9 1.3E-06 2.8E-11 85.1 27.7 91 343-446 246-346 (366)
73 cd03811 GT1_WabH_like This fam 98.9 5.6E-07 1.2E-11 86.7 24.7 319 19-443 1-341 (353)
74 cd03796 GT1_PIG-A_like This fa 98.9 2E-06 4.3E-11 85.4 28.3 79 343-435 249-334 (398)
75 TIGR02472 sucr_P_syn_N sucrose 98.9 4.6E-06 1E-10 83.8 30.4 89 343-441 316-413 (439)
76 PRK14089 ipid-A-disaccharide s 98.9 3.4E-07 7.5E-12 87.5 20.8 148 286-452 167-332 (347)
77 PRK09922 UDP-D-galactose:(gluc 98.9 9.7E-07 2.1E-11 86.3 24.3 134 287-436 180-326 (359)
78 cd03812 GT1_CapH_like This fam 98.9 3.9E-06 8.5E-11 81.8 28.4 88 343-443 248-340 (358)
79 cd03819 GT1_WavL_like This fam 98.9 1.1E-05 2.3E-10 78.5 31.3 308 27-441 9-338 (355)
80 cd03799 GT1_amsK_like This is 98.8 4.8E-06 1E-10 81.0 27.9 87 343-441 235-334 (355)
81 cd04955 GT1_like_6 This family 98.8 1.1E-05 2.3E-10 78.9 29.5 132 290-443 196-339 (363)
82 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.3E-06 2.8E-11 85.2 22.4 132 286-437 201-341 (365)
83 cd04951 GT1_WbdM_like This fam 98.8 4.6E-06 9.9E-11 81.3 26.5 93 343-449 244-342 (360)
84 cd03807 GT1_WbnK_like This fam 98.8 2.6E-05 5.5E-10 75.6 31.7 82 343-438 250-336 (365)
85 TIGR02149 glgA_Coryne glycogen 98.8 9.5E-06 2.1E-10 80.2 28.3 143 288-443 202-361 (388)
86 COG1519 KdtA 3-deoxy-D-manno-o 98.8 2.7E-05 5.9E-10 74.3 29.0 315 26-448 57-400 (419)
87 TIGR02470 sucr_synth sucrose s 98.7 4.5E-05 9.8E-10 79.9 31.8 92 343-444 618-723 (784)
88 cd03809 GT1_mtfB_like This fam 98.7 1.3E-05 2.8E-10 78.0 25.5 93 342-448 251-350 (365)
89 COG0381 WecB UDP-N-acetylgluco 98.7 4.1E-06 9E-11 79.1 20.4 350 17-466 3-369 (383)
90 PLN02846 digalactosyldiacylgly 98.7 3.5E-05 7.6E-10 76.5 27.8 73 348-435 288-364 (462)
91 PLN02275 transferase, transfer 98.7 5.3E-05 1.1E-09 74.4 28.7 75 344-432 286-371 (371)
92 TIGR03087 stp1 sugar transfera 98.6 3.5E-05 7.6E-10 76.5 26.5 90 343-446 279-374 (397)
93 PF02350 Epimerase_2: UDP-N-ac 98.6 1.3E-07 2.7E-12 91.2 8.6 255 108-443 55-327 (346)
94 cd03792 GT1_Trehalose_phosphor 98.6 2.3E-05 5.1E-10 77.0 24.4 91 343-447 251-350 (372)
95 cd03804 GT1_wbaZ_like This fam 98.6 5.5E-06 1.2E-10 80.7 19.7 137 289-445 197-338 (351)
96 TIGR03088 stp2 sugar transfera 98.6 0.00058 1.3E-08 67.1 33.7 85 343-439 254-343 (374)
97 PRK15427 colanic acid biosynth 98.5 0.00016 3.6E-09 71.7 28.1 87 343-441 278-378 (406)
98 cd03806 GT1_ALG11_like This fa 98.4 0.00017 3.7E-09 71.9 25.8 80 343-435 304-393 (419)
99 PRK01021 lpxB lipid-A-disaccha 98.4 0.00017 3.6E-09 72.9 24.7 215 230-461 361-598 (608)
100 PF02684 LpxB: Lipid-A-disacch 98.4 0.00015 3.2E-09 70.1 22.3 216 230-462 133-368 (373)
101 PRK15179 Vi polysaccharide bio 98.3 0.0012 2.6E-08 69.3 29.8 93 343-445 573-674 (694)
102 KOG3349 Predicted glycosyltran 98.3 3.4E-06 7.3E-11 67.8 8.4 116 287-412 4-133 (170)
103 PRK00654 glgA glycogen synthas 98.3 0.00033 7.2E-09 71.0 25.0 131 287-433 282-427 (466)
104 PLN00142 sucrose synthase 98.3 0.0013 2.8E-08 69.4 28.5 71 365-445 669-747 (815)
105 cd04950 GT1_like_1 Glycosyltra 98.3 0.0017 3.6E-08 63.9 27.9 180 228-435 151-341 (373)
106 PLN02501 digalactosyldiacylgly 98.3 0.00046 1E-08 70.6 23.8 78 345-437 602-684 (794)
107 TIGR02095 glgA glycogen/starch 98.2 0.00022 4.8E-09 72.5 22.3 84 342-433 344-436 (473)
108 cd03791 GT1_Glycogen_synthase_ 98.2 0.00063 1.4E-08 69.3 25.3 84 343-434 350-442 (476)
109 COG0763 LpxB Lipid A disacchar 98.1 0.00066 1.4E-08 64.3 19.9 347 18-469 2-379 (381)
110 TIGR02918 accessory Sec system 98.1 0.0017 3.6E-08 66.1 23.8 87 343-435 375-468 (500)
111 PF13844 Glyco_transf_41: Glyc 98.1 0.0001 2.3E-09 72.5 14.6 144 285-441 283-437 (468)
112 PLN02949 transferase, transfer 98.0 0.026 5.6E-07 56.9 32.3 83 343-437 334-426 (463)
113 PLN02316 synthase/transferase 97.9 0.043 9.4E-07 59.7 31.7 84 343-434 899-998 (1036)
114 cd03813 GT1_like_3 This family 97.9 0.011 2.4E-07 60.1 26.2 93 343-446 353-454 (475)
115 PRK10017 colanic acid biosynth 97.7 0.056 1.2E-06 53.7 29.3 177 278-470 226-423 (426)
116 PRK14098 glycogen synthase; Pr 97.7 0.034 7.3E-07 56.7 27.0 82 341-432 359-449 (489)
117 COG5017 Uncharacterized conser 97.7 0.00032 6.8E-09 55.6 9.2 109 289-413 2-123 (161)
118 cd04949 GT1_gtfA_like This fam 97.7 0.01 2.2E-07 58.1 22.5 89 343-440 260-351 (372)
119 cd04946 GT1_AmsK_like This fam 97.7 0.0012 2.5E-08 65.8 15.5 90 343-441 288-384 (407)
120 PRK14099 glycogen synthase; Pr 97.7 0.043 9.4E-07 55.8 26.3 40 16-55 2-47 (485)
121 PF00534 Glycos_transf_1: Glyc 97.6 0.001 2.3E-08 57.3 12.3 91 343-445 72-169 (172)
122 PRK10125 putative glycosyl tra 97.6 0.032 7E-07 55.3 24.2 100 303-428 257-365 (405)
123 PRK15484 lipopolysaccharide 1, 97.5 0.0045 9.8E-08 61.0 17.0 86 342-438 255-348 (380)
124 cd01635 Glycosyltransferase_GT 97.5 0.014 3E-07 52.3 18.1 48 343-392 160-215 (229)
125 TIGR02193 heptsyl_trn_I lipopo 97.3 0.047 1E-06 52.3 20.6 134 286-432 179-319 (319)
126 KOG4626 O-linked N-acetylgluco 97.3 0.0056 1.2E-07 61.0 13.3 139 284-436 756-906 (966)
127 COG1817 Uncharacterized protei 97.2 0.17 3.7E-06 46.7 23.3 113 19-160 2-116 (346)
128 PRK09814 beta-1,6-galactofuran 97.1 0.003 6.4E-08 61.0 9.9 110 342-468 205-332 (333)
129 PLN02939 transferase, transfer 97.1 0.65 1.4E-05 50.2 28.6 91 343-441 836-942 (977)
130 PF13477 Glyco_trans_4_2: Glyc 97.1 0.011 2.4E-07 48.9 11.5 103 19-156 1-107 (139)
131 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0027 5.8E-08 52.2 7.5 80 343-434 52-135 (135)
132 PRK10422 lipopolysaccharide co 97.0 0.12 2.6E-06 50.3 19.6 110 13-153 1-113 (352)
133 cd03789 GT1_LPS_heptosyltransf 96.8 0.12 2.5E-06 48.5 17.5 102 19-153 1-105 (279)
134 COG3914 Spy Predicted O-linked 96.8 0.7 1.5E-05 46.4 22.8 104 284-395 427-542 (620)
135 PRK10916 ADP-heptose:LPS hepto 96.7 0.25 5.4E-06 48.0 19.6 103 18-153 1-106 (348)
136 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.061 1.3E-06 51.0 13.6 168 230-412 97-281 (311)
137 PF06722 DUF1205: Protein of u 96.5 0.0038 8.2E-08 47.7 4.4 55 271-325 25-84 (97)
138 TIGR02201 heptsyl_trn_III lipo 96.3 0.2 4.3E-06 48.6 16.0 106 19-154 1-109 (344)
139 PRK15490 Vi polysaccharide bio 96.3 1.6 3.4E-05 44.6 29.2 64 343-413 454-522 (578)
140 PF13579 Glyco_trans_4_4: Glyc 96.0 0.011 2.4E-07 49.7 5.1 98 32-156 5-104 (160)
141 TIGR02195 heptsyl_trn_II lipop 96.0 0.76 1.7E-05 44.3 18.4 102 19-153 1-105 (334)
142 COG0859 RfaF ADP-heptose:LPS h 95.9 0.29 6.3E-06 47.2 14.9 107 18-156 2-110 (334)
143 COG3660 Predicted nucleoside-d 95.8 1.4 3E-05 39.9 18.6 96 288-388 164-271 (329)
144 PF12000 Glyco_trans_4_3: Gkyc 95.7 0.079 1.7E-06 45.2 8.7 95 43-156 1-96 (171)
145 PRK10964 ADP-heptose:LPS hepto 95.6 2.3 4.9E-05 40.8 20.3 46 18-63 1-48 (322)
146 PF13524 Glyco_trans_1_2: Glyc 95.3 0.18 4E-06 38.1 8.8 66 369-447 9-75 (92)
147 PHA01630 putative group 1 glyc 95.2 0.42 9.2E-06 46.0 13.1 93 350-450 196-313 (331)
148 PHA01633 putative glycosyl tra 95.2 0.56 1.2E-05 45.0 13.6 85 342-434 199-307 (335)
149 PF01975 SurE: Survival protei 95.1 0.064 1.4E-06 47.0 6.4 116 18-157 1-134 (196)
150 PRK13932 stationary phase surv 93.4 1.1 2.4E-05 41.0 10.9 114 16-156 4-133 (257)
151 PRK02261 methylaspartate mutas 93.3 1.2 2.7E-05 36.5 10.2 49 15-63 1-49 (137)
152 PF13439 Glyco_transf_4: Glyco 93.3 0.85 1.8E-05 38.7 9.8 32 26-57 10-41 (177)
153 cd02067 B12-binding B12 bindin 93.2 0.72 1.6E-05 36.8 8.5 43 19-61 1-43 (119)
154 COG1618 Predicted nucleotide k 92.7 0.65 1.4E-05 38.8 7.4 57 16-86 4-60 (179)
155 PF08660 Alg14: Oligosaccharid 92.5 1.2 2.5E-05 38.2 9.2 115 23-156 3-129 (170)
156 TIGR00715 precor6x_red precorr 92.2 0.72 1.6E-05 42.4 8.1 91 18-155 1-99 (256)
157 TIGR02919 accessory Sec system 91.5 4 8.6E-05 40.9 13.0 176 229-447 238-424 (438)
158 TIGR00087 surE 5'/3'-nucleotid 91.3 2 4.4E-05 39.1 9.8 112 18-156 1-128 (244)
159 PF02951 GSH-S_N: Prokaryotic 90.5 0.42 9.1E-06 38.0 4.1 40 18-57 1-43 (119)
160 PRK13933 stationary phase surv 90.1 5 0.00011 36.7 11.3 113 18-156 1-129 (253)
161 COG0496 SurE Predicted acid ph 90.1 1.3 2.7E-05 40.2 7.2 113 18-158 1-127 (252)
162 KOG2941 Beta-1,4-mannosyltrans 89.0 22 0.00047 33.9 26.3 127 16-161 11-142 (444)
163 PRK13935 stationary phase surv 88.9 4.9 0.00011 36.7 10.3 113 18-156 1-128 (253)
164 TIGR02370 pyl_corrinoid methyl 88.9 3.6 7.9E-05 36.2 9.3 107 17-152 84-190 (197)
165 PRK13934 stationary phase surv 88.8 5.7 0.00012 36.5 10.6 112 18-156 1-127 (266)
166 PF06925 MGDG_synth: Monogalac 88.6 0.73 1.6E-05 39.5 4.6 42 108-156 77-124 (169)
167 cd02070 corrinoid_protein_B12- 88.4 2.2 4.8E-05 37.7 7.6 108 17-153 82-189 (201)
168 PRK00346 surE 5'(3')-nucleotid 87.9 6.8 0.00015 35.8 10.5 111 18-156 1-124 (250)
169 TIGR02400 trehalose_OtsA alpha 87.8 1.9 4.1E-05 43.5 7.7 101 350-470 342-455 (456)
170 cd01425 RPS2 Ribosomal protein 87.3 3.3 7.2E-05 36.3 8.0 117 30-159 41-161 (193)
171 PF02441 Flavoprotein: Flavopr 86.4 1.2 2.6E-05 36.1 4.5 45 18-63 1-45 (129)
172 COG4370 Uncharacterized protei 86.0 30 0.00065 32.3 18.4 99 344-450 294-396 (412)
173 cd00561 CobA_CobO_BtuR ATP:cor 86.0 15 0.00033 31.0 10.9 100 19-138 4-106 (159)
174 TIGR03713 acc_sec_asp1 accesso 85.1 4 8.6E-05 41.9 8.4 80 344-440 409-494 (519)
175 PF00551 Formyl_trans_N: Formy 85.1 4 8.6E-05 35.4 7.3 106 18-157 1-110 (181)
176 PF02142 MGS: MGS-like domain 84.4 2.5 5.5E-05 32.1 5.2 83 34-152 2-94 (95)
177 PRK05986 cob(I)alamin adenolsy 84.4 16 0.00035 31.8 10.6 102 17-138 22-126 (191)
178 COG1703 ArgK Putative periplas 84.3 3.4 7.3E-05 38.4 6.6 120 16-157 50-175 (323)
179 COG0003 ArsA Predicted ATPase 83.8 12 0.00026 35.6 10.4 43 18-60 2-45 (322)
180 PRK13931 stationary phase surv 83.8 6.9 0.00015 36.0 8.5 100 32-156 14-129 (261)
181 cd02071 MM_CoA_mut_B12_BD meth 83.7 11 0.00024 30.1 8.9 43 19-61 1-43 (122)
182 COG0438 RfaG Glycosyltransfera 83.7 38 0.00082 31.6 16.7 88 344-443 257-351 (381)
183 COG0052 RpsB Ribosomal protein 83.5 7.8 0.00017 34.9 8.3 35 126-160 155-191 (252)
184 PF02571 CbiJ: Precorrin-6x re 83.2 7.4 0.00016 35.6 8.4 93 18-155 1-100 (249)
185 PLN03063 alpha,alpha-trehalose 83.1 5.9 0.00013 43.0 9.0 96 356-470 371-476 (797)
186 PRK08305 spoVFB dipicolinate s 83.1 2.3 5E-05 37.2 4.9 45 16-60 4-48 (196)
187 PRK08057 cobalt-precorrin-6x r 83.0 5.9 0.00013 36.2 7.7 90 18-155 3-99 (248)
188 PF02374 ArsA_ATPase: Anion-tr 82.7 23 0.0005 33.6 11.9 44 18-61 1-45 (305)
189 cd03788 GT1_TPS Trehalose-6-Ph 82.2 6.2 0.00014 39.9 8.4 101 349-469 346-459 (460)
190 COG2185 Sbm Methylmalonyl-CoA 82.1 5.7 0.00012 32.6 6.5 48 15-62 10-57 (143)
191 smart00851 MGS MGS-like domain 81.8 16 0.00034 27.3 8.6 79 34-152 2-89 (90)
192 PRK13982 bifunctional SbtC-lik 81.8 3.4 7.3E-05 41.5 6.1 41 16-56 255-307 (475)
193 PRK05973 replicative DNA helic 81.0 13 0.00028 33.8 9.0 45 18-62 65-109 (237)
194 KOG1111 N-acetylglucosaminyltr 80.3 57 0.0012 31.4 15.5 84 298-388 207-301 (426)
195 PRK12311 rpsB 30S ribosomal pr 80.1 6.1 0.00013 37.6 6.9 35 126-160 151-187 (326)
196 TIGR00708 cobA cob(I)alamin ad 80.0 30 0.00065 29.7 10.4 96 19-138 7-108 (173)
197 PRK06249 2-dehydropantoate 2-r 79.8 4.3 9.3E-05 38.7 6.0 45 13-63 1-45 (313)
198 PF04127 DFP: DNA / pantothena 79.5 0.98 2.1E-05 39.3 1.4 39 17-55 3-53 (185)
199 COG2894 MinD Septum formation 79.4 11 0.00023 33.5 7.5 102 18-136 2-122 (272)
200 cd01974 Nitrogenase_MoFe_beta 79.2 17 0.00037 36.5 10.2 27 126-155 376-402 (435)
201 PF06564 YhjQ: YhjQ protein; 78.9 16 0.00035 33.2 9.0 36 19-54 3-39 (243)
202 cd02069 methionine_synthase_B1 78.7 12 0.00026 33.4 8.1 47 17-63 88-134 (213)
203 PRK14501 putative bifunctional 78.6 7 0.00015 42.2 7.8 107 348-470 346-461 (726)
204 COG0541 Ffh Signal recognition 78.6 8.5 0.00018 37.8 7.4 47 17-63 100-146 (451)
205 COG0552 FtsY Signal recognitio 78.6 6.5 0.00014 37.2 6.4 47 16-62 138-184 (340)
206 PF02844 GARS_N: Phosphoribosy 78.4 16 0.00035 28.0 7.5 28 126-153 61-91 (100)
207 PRK05647 purN phosphoribosylgl 77.3 25 0.00054 31.0 9.6 34 18-54 2-37 (200)
208 PF04413 Glycos_transf_N: 3-De 77.2 9.4 0.0002 33.2 6.8 99 18-155 22-125 (186)
209 COG4088 Predicted nucleotide k 77.0 39 0.00085 29.9 10.1 109 18-164 2-116 (261)
210 PF04464 Glyphos_transf: CDP-G 76.9 4.8 0.0001 39.3 5.6 113 343-465 251-367 (369)
211 PRK02797 4-alpha-L-fucosyltran 76.9 61 0.0013 30.6 12.2 81 344-432 206-292 (322)
212 TIGR00460 fmt methionyl-tRNA f 76.1 23 0.0005 33.7 9.7 32 18-54 1-32 (313)
213 PRK06849 hypothetical protein; 76.1 24 0.00052 34.8 10.3 37 16-56 3-39 (389)
214 PF00448 SRP54: SRP54-type pro 75.9 21 0.00046 31.3 8.8 42 18-59 2-43 (196)
215 COG1484 DnaC DNA replication p 75.9 5.5 0.00012 36.7 5.2 47 17-63 105-151 (254)
216 TIGR02398 gluc_glyc_Psyn gluco 75.7 59 0.0013 33.1 12.8 107 346-471 364-482 (487)
217 TIGR00347 bioD dethiobiotin sy 75.6 18 0.00038 30.6 8.1 27 25-51 6-32 (166)
218 cd01423 MGS_CPS_I_III Methylgl 75.6 26 0.00056 27.6 8.5 87 30-153 11-106 (116)
219 TIGR02015 BchY chlorophyllide 75.6 23 0.0005 35.4 9.9 32 18-54 286-317 (422)
220 PRK08506 replicative DNA helic 75.4 19 0.00041 36.6 9.4 42 20-61 195-236 (472)
221 PF03796 DnaB_C: DnaB-like hel 75.2 4.1 8.9E-05 37.6 4.3 127 20-157 22-179 (259)
222 COG2910 Putative NADH-flavin r 74.9 4 8.7E-05 35.0 3.7 36 18-57 1-36 (211)
223 cd01424 MGS_CPS_II Methylglyox 74.9 34 0.00073 26.6 8.9 84 29-153 10-100 (110)
224 PF01012 ETF: Electron transfe 74.6 8.6 0.00019 32.6 5.8 109 20-156 2-122 (164)
225 PRK10867 signal recognition pa 74.4 29 0.00063 34.7 10.2 44 17-60 100-144 (433)
226 PF05159 Capsule_synth: Capsul 74.2 18 0.0004 33.5 8.4 78 305-389 144-225 (269)
227 TIGR01501 MthylAspMutase methy 74.1 43 0.00094 27.3 9.4 46 18-63 2-47 (134)
228 cd00550 ArsA_ATPase Oxyanion-t 74.1 21 0.00046 32.8 8.7 42 20-62 3-44 (254)
229 TIGR03600 phage_DnaB phage rep 73.8 23 0.0005 35.4 9.5 42 20-61 197-239 (421)
230 cd01980 Chlide_reductase_Y Chl 73.7 31 0.00067 34.4 10.4 28 126-156 349-376 (416)
231 PF07015 VirC1: VirC1 protein; 73.2 12 0.00026 33.7 6.4 43 20-62 4-47 (231)
232 PRK06732 phosphopantothenate-- 73.2 3.6 7.8E-05 37.2 3.3 37 18-54 1-49 (229)
233 COG2109 BtuR ATP:corrinoid ade 73.1 62 0.0013 28.1 10.5 99 20-138 31-133 (198)
234 TIGR01425 SRP54_euk signal rec 73.0 27 0.00059 34.8 9.5 43 17-59 100-142 (429)
235 TIGR00959 ffh signal recogniti 73.0 23 0.00049 35.4 9.0 44 17-60 99-143 (428)
236 PRK14106 murD UDP-N-acetylmura 72.9 27 0.0006 35.1 10.0 38 13-55 1-38 (450)
237 PRK05595 replicative DNA helic 72.7 14 0.00029 37.3 7.6 42 20-61 204-246 (444)
238 PRK08760 replicative DNA helic 72.6 16 0.00034 37.2 8.0 41 20-60 232-273 (476)
239 PRK07313 phosphopantothenoylcy 72.5 5.6 0.00012 34.5 4.2 43 18-61 2-44 (182)
240 PF12146 Hydrolase_4: Putative 72.2 9.2 0.0002 27.9 4.7 34 18-51 16-49 (79)
241 PF02310 B12-binding: B12 bind 72.1 12 0.00026 29.6 5.9 43 19-61 2-44 (121)
242 COG3640 CooC CO dehydrogenase 71.0 52 0.0011 29.7 9.7 46 18-63 1-47 (255)
243 PRK01175 phosphoribosylformylg 70.9 50 0.0011 30.5 10.2 37 16-55 2-38 (261)
244 PRK08006 replicative DNA helic 70.8 26 0.00056 35.5 9.1 42 20-61 227-269 (471)
245 PHA02542 41 41 helicase; Provi 70.1 19 0.00041 36.5 7.9 42 20-61 193-234 (473)
246 cd01965 Nitrogenase_MoFe_beta_ 69.8 28 0.00062 34.8 9.2 27 126-155 370-396 (428)
247 CHL00067 rps2 ribosomal protei 69.6 20 0.00043 32.4 7.2 36 126-161 160-197 (230)
248 PRK00090 bioD dithiobiotin syn 69.6 54 0.0012 29.2 10.2 33 20-52 2-35 (222)
249 PF10083 DUF2321: Uncharacteri 69.4 12 0.00025 31.0 5.0 75 381-469 74-149 (158)
250 cd00984 DnaB_C DnaB helicase C 69.2 35 0.00076 30.9 9.0 44 19-62 15-59 (242)
251 TIGR01285 nifN nitrogenase mol 69.2 29 0.00063 34.8 9.0 88 17-155 311-398 (432)
252 TIGR00064 ftsY signal recognit 68.2 57 0.0012 30.3 10.2 41 18-58 73-113 (272)
253 COG0859 RfaF ADP-heptose:LPS h 68.1 38 0.00083 32.5 9.4 101 17-158 175-280 (334)
254 PRK09620 hypothetical protein; 67.9 6.2 0.00013 35.7 3.6 39 16-54 2-52 (229)
255 KOG0853 Glycosyltransferase [C 67.6 5.5 0.00012 40.0 3.4 62 374-443 381-442 (495)
256 PF07429 Glyco_transf_56: 4-al 67.3 1.2E+02 0.0026 29.1 12.6 82 344-433 245-332 (360)
257 PRK09165 replicative DNA helic 67.1 28 0.00061 35.6 8.6 43 20-62 220-277 (497)
258 PRK06988 putative formyltransf 67.0 58 0.0013 31.0 10.2 32 18-54 3-34 (312)
259 PRK13789 phosphoribosylamine-- 66.5 23 0.00049 35.5 7.6 35 17-56 4-38 (426)
260 PRK06321 replicative DNA helic 66.2 44 0.00095 33.9 9.6 42 20-61 229-271 (472)
261 PF09314 DUF1972: Domain of un 66.0 90 0.0019 27.1 11.5 56 18-85 2-62 (185)
262 PRK11519 tyrosine kinase; Prov 65.4 1.8E+02 0.0038 31.5 14.5 122 17-155 525-667 (719)
263 TIGR02852 spore_dpaB dipicolin 64.8 9.4 0.0002 33.2 3.9 41 18-58 1-41 (187)
264 PRK05920 aromatic acid decarbo 64.7 12 0.00026 33.1 4.6 44 18-62 4-47 (204)
265 PRK14974 cell division protein 64.4 72 0.0016 30.7 10.2 42 17-58 140-181 (336)
266 PRK06904 replicative DNA helic 64.4 35 0.00076 34.6 8.5 42 20-61 224-266 (472)
267 PF10649 DUF2478: Protein of u 64.3 79 0.0017 26.7 9.2 121 22-160 3-135 (159)
268 PRK08840 replicative DNA helic 64.2 37 0.00081 34.4 8.7 42 20-61 220-262 (464)
269 cd01715 ETF_alpha The electron 64.1 63 0.0014 27.4 9.0 31 126-156 82-115 (168)
270 PF00318 Ribosomal_S2: Ribosom 64.1 38 0.00082 30.2 7.8 35 126-160 142-178 (211)
271 TIGR03880 KaiC_arch_3 KaiC dom 63.6 38 0.00082 30.3 8.0 46 18-63 17-62 (224)
272 PRK05299 rpsB 30S ribosomal pr 63.5 37 0.0008 31.3 7.8 35 126-160 156-192 (258)
273 TIGR01011 rpsB_bact ribosomal 63.5 35 0.00075 30.7 7.5 35 126-160 154-190 (225)
274 TIGR02655 circ_KaiC circadian 63.4 70 0.0015 32.6 10.6 47 17-63 263-309 (484)
275 PRK05636 replicative DNA helic 63.3 22 0.00047 36.4 6.9 41 20-60 268-309 (505)
276 cd01985 ETF The electron trans 63.2 57 0.0012 28.1 8.7 30 126-155 90-122 (181)
277 PRK06029 3-octaprenyl-4-hydrox 63.0 13 0.00028 32.3 4.4 44 18-62 2-46 (185)
278 PF06506 PrpR_N: Propionate ca 62.9 53 0.0012 28.2 8.4 110 29-160 17-155 (176)
279 PRK14478 nitrogenase molybdenu 62.7 54 0.0012 33.3 9.6 26 126-154 392-417 (475)
280 PRK07004 replicative DNA helic 62.5 40 0.00086 34.1 8.5 42 20-61 216-258 (460)
281 cd03466 Nitrogenase_NifN_2 Nit 62.3 60 0.0013 32.5 9.8 27 126-155 371-397 (429)
282 TIGR03878 thermo_KaiC_2 KaiC d 61.8 49 0.0011 30.5 8.4 41 17-57 36-76 (259)
283 PRK12342 hypothetical protein; 61.6 15 0.00032 33.8 4.8 32 126-157 108-145 (254)
284 PF08323 Glyco_transf_5: Starc 61.3 12 0.00026 34.2 4.3 29 27-55 15-43 (245)
285 cd01121 Sms Sms (bacterial rad 61.2 43 0.00093 32.8 8.2 42 19-60 84-125 (372)
286 PRK12921 2-dehydropantoate 2-r 61.2 15 0.00033 34.7 5.1 40 18-62 1-40 (305)
287 PF02572 CobA_CobO_BtuR: ATP:c 61.1 70 0.0015 27.4 8.5 100 19-138 5-107 (172)
288 TIGR00640 acid_CoA_mut_C methy 60.8 90 0.0019 25.4 11.3 45 16-60 1-45 (132)
289 PRK04328 hypothetical protein; 60.5 1.1E+02 0.0023 28.1 10.4 46 17-62 23-68 (249)
290 PRK13869 plasmid-partitioning 60.4 1.2E+02 0.0027 30.1 11.4 38 17-54 120-159 (405)
291 TIGR00639 PurN phosphoribosylg 60.2 99 0.0022 27.0 9.6 34 18-54 1-36 (190)
292 PLN02712 arogenate dehydrogena 59.5 57 0.0012 34.8 9.4 35 16-55 368-402 (667)
293 PF01210 NAD_Gly3P_dh_N: NAD-d 59.5 8.2 0.00018 32.5 2.6 39 19-62 1-40 (157)
294 cd01968 Nitrogenase_NifE_I Nit 59.4 73 0.0016 31.7 9.8 26 126-154 355-380 (410)
295 cd03115 SRP The signal recogni 59.1 58 0.0013 27.6 8.0 40 20-59 3-42 (173)
296 PRK07773 replicative DNA helic 59.1 49 0.0011 36.7 9.2 43 20-62 220-263 (886)
297 PRK11823 DNA repair protein Ra 59.0 43 0.00093 33.7 8.1 44 18-61 81-124 (446)
298 COG2874 FlaH Predicted ATPases 58.9 76 0.0016 28.3 8.3 46 18-63 29-75 (235)
299 cd01124 KaiC KaiC is a circadi 58.8 27 0.00058 30.0 5.9 43 20-62 2-44 (187)
300 PRK04885 ppnK inorganic polyph 58.4 16 0.00035 33.8 4.6 51 364-434 37-93 (265)
301 PF00731 AIRC: AIR carboxylase 58.2 1.1E+02 0.0024 25.5 11.4 140 288-451 2-149 (150)
302 PRK01077 cobyrinic acid a,c-di 58.0 64 0.0014 32.6 9.1 35 19-53 5-40 (451)
303 PRK12446 undecaprenyldiphospho 57.9 41 0.00088 32.7 7.5 98 287-388 3-120 (352)
304 PRK10416 signal recognition pa 57.7 1.2E+02 0.0026 29.0 10.4 41 17-57 114-154 (318)
305 cd03789 GT1_LPS_heptosyltransf 57.7 86 0.0019 29.0 9.5 101 18-157 122-226 (279)
306 PRK00784 cobyric acid synthase 57.4 80 0.0017 32.2 9.8 33 20-52 5-38 (488)
307 PRK07206 hypothetical protein; 57.3 46 0.001 33.0 8.1 33 18-55 3-35 (416)
308 PF01075 Glyco_transf_9: Glyco 57.0 33 0.00072 31.1 6.5 100 17-158 105-212 (247)
309 KOG0780 Signal recognition par 56.3 41 0.0009 32.7 6.8 44 16-59 100-143 (483)
310 PRK05748 replicative DNA helic 56.0 57 0.0012 32.9 8.4 43 19-61 205-248 (448)
311 PRK06522 2-dehydropantoate 2-r 55.9 16 0.00036 34.4 4.4 39 18-61 1-40 (304)
312 TIGR00665 DnaB replicative DNA 55.9 65 0.0014 32.3 8.9 43 19-61 197-240 (434)
313 cd02037 MRP-like MRP (Multiple 55.2 43 0.00092 28.4 6.5 33 24-56 7-39 (169)
314 PRK08116 hypothetical protein; 55.0 1.7E+02 0.0037 27.1 10.8 42 20-61 117-158 (268)
315 PRK08229 2-dehydropantoate 2-r 55.0 18 0.00039 34.9 4.5 39 18-61 3-41 (341)
316 TIGR01283 nifE nitrogenase mol 55.0 1.1E+02 0.0023 31.0 10.2 27 126-155 394-420 (456)
317 cd02072 Glm_B12_BD B12 binding 54.8 1.1E+02 0.0025 24.7 8.7 45 19-63 1-45 (128)
318 PF07355 GRDB: Glycine/sarcosi 54.7 21 0.00046 34.0 4.7 41 111-155 68-118 (349)
319 TIGR02195 heptsyl_trn_II lipop 54.6 1.2E+02 0.0026 29.0 10.2 99 18-156 175-278 (334)
320 PRK00005 fmt methionyl-tRNA fo 54.6 1.4E+02 0.003 28.4 10.4 31 18-53 1-31 (309)
321 PLN02470 acetolactate synthase 54.4 45 0.00097 35.0 7.7 92 292-389 2-109 (585)
322 COG0287 TyrA Prephenate dehydr 54.4 26 0.00056 32.7 5.2 41 18-63 4-44 (279)
323 PRK11199 tyrA bifunctional cho 54.0 1.5E+02 0.0032 29.1 10.8 33 18-55 99-132 (374)
324 cd02034 CooC The accessory pro 53.4 1.1E+02 0.0024 24.1 12.3 37 19-55 1-37 (116)
325 PRK06067 flagellar accessory p 53.3 53 0.0012 29.6 7.1 46 17-62 25-70 (234)
326 PF02606 LpxK: Tetraacyldisacc 53.2 51 0.0011 31.6 7.1 35 23-57 43-77 (326)
327 PF14336 DUF4392: Domain of un 53.0 24 0.00051 33.2 4.8 47 17-63 40-94 (291)
328 cd03793 GT1_Glycogen_synthase_ 53.0 71 0.0015 33.1 8.4 78 354-435 468-553 (590)
329 PF01075 Glyco_transf_9: Glyco 52.6 15 0.00033 33.4 3.4 97 285-388 104-208 (247)
330 PRK13768 GTPase; Provisional 52.5 39 0.00085 31.0 6.1 38 18-55 3-40 (253)
331 PRK07313 phosphopantothenoylcy 52.5 1.5E+02 0.0032 25.7 9.3 137 288-433 4-179 (182)
332 COG0801 FolK 7,8-dihydro-6-hyd 52.5 30 0.00065 29.1 4.7 36 288-323 3-38 (160)
333 cd05298 GH4_GlvA_pagL_like Gly 52.4 2.3E+02 0.0051 28.4 11.9 109 34-162 45-173 (437)
334 CHL00072 chlL photochlorophyll 52.3 26 0.00057 32.9 5.0 39 18-56 1-39 (290)
335 COG2236 Predicted phosphoribos 52.2 37 0.0008 29.6 5.5 49 109-159 13-64 (192)
336 TIGR00421 ubiX_pad polyprenyl 52.1 19 0.00041 31.2 3.7 42 19-61 1-42 (181)
337 TIGR01286 nifK nitrogenase mol 51.8 1.1E+02 0.0023 31.5 9.6 27 126-155 436-462 (515)
338 TIGR02113 coaC_strep phosphopa 51.6 22 0.00047 30.7 4.0 42 19-61 2-43 (177)
339 COG0223 Fmt Methionyl-tRNA for 51.6 21 0.00046 33.6 4.2 35 18-57 2-36 (307)
340 cd02032 Bchl_like This family 51.0 26 0.00057 32.3 4.8 37 18-54 1-37 (267)
341 PRK05632 phosphate acetyltrans 50.7 2.1E+02 0.0045 30.8 11.9 103 19-158 4-116 (684)
342 PRK03359 putative electron tra 50.3 29 0.00064 31.9 4.8 32 126-157 111-148 (256)
343 cd03114 ArgK-like The function 50.3 1.5E+02 0.0032 24.6 11.1 36 20-55 2-37 (148)
344 COG1066 Sms Predicted ATP-depe 50.2 48 0.001 32.6 6.3 43 18-61 94-136 (456)
345 COG2085 Predicted dinucleotide 50.1 29 0.00063 30.6 4.5 35 18-57 2-36 (211)
346 PRK10916 ADP-heptose:LPS hepto 50.0 57 0.0012 31.5 7.2 103 18-156 181-288 (348)
347 COG2861 Uncharacterized protei 50.0 1.4E+02 0.0031 26.9 8.7 39 109-153 137-178 (250)
348 PRK02155 ppnK NAD(+)/NADH kina 49.9 25 0.00054 33.1 4.4 53 363-435 64-120 (291)
349 PF02056 Glyco_hydro_4: Family 49.9 1.3E+02 0.0028 26.1 8.4 122 19-161 30-173 (183)
350 PLN02712 arogenate dehydrogena 49.6 1.1E+02 0.0023 32.8 9.5 37 16-57 51-87 (667)
351 cd01018 ZntC Metal binding pro 49.5 2.1E+02 0.0047 26.3 11.6 47 111-161 205-253 (266)
352 cd00672 CysRS_core catalytic c 49.2 1.6E+02 0.0035 26.2 9.2 93 27-153 35-131 (213)
353 TIGR00725 conserved hypothetic 48.8 42 0.00091 28.3 5.2 95 275-389 22-122 (159)
354 PF00148 Oxidored_nitro: Nitro 48.8 1.9E+02 0.0042 28.4 10.9 96 17-155 271-366 (398)
355 KOG0081 GTPase Rab27, small G 48.7 45 0.00097 27.9 5.0 47 112-160 109-167 (219)
356 TIGR00877 purD phosphoribosyla 48.7 1.1E+02 0.0024 30.4 9.2 36 18-58 1-36 (423)
357 PRK13011 formyltetrahydrofolat 48.6 1.8E+02 0.0039 27.3 9.9 35 16-53 88-124 (286)
358 PF03808 Glyco_tran_WecB: Glyc 48.5 1.7E+02 0.0037 24.9 11.1 90 34-153 37-131 (172)
359 PF09001 DUF1890: Domain of un 48.4 28 0.0006 28.3 3.7 34 30-63 12-45 (139)
360 cd07039 TPP_PYR_POX Pyrimidine 48.3 1.7E+02 0.0036 24.7 9.4 27 363-389 64-96 (164)
361 COG1797 CobB Cobyrinic acid a, 48.2 20 0.00043 35.3 3.5 110 19-162 2-125 (451)
362 PRK14619 NAD(P)H-dependent gly 48.2 38 0.00081 32.2 5.5 34 17-55 4-37 (308)
363 TIGR00416 sms DNA repair prote 48.0 65 0.0014 32.5 7.3 44 18-61 95-138 (454)
364 TIGR02193 heptsyl_trn_I lipopo 47.9 1.2E+02 0.0026 28.8 8.9 98 17-156 179-281 (319)
365 COG0132 BioD Dethiobiotin synt 47.8 2.1E+02 0.0045 25.7 11.4 34 18-51 2-37 (223)
366 PF03308 ArgK: ArgK protein; 47.7 27 0.00058 32.0 4.0 118 17-156 29-152 (266)
367 PRK09841 cryptic autophosphory 47.6 4E+02 0.0087 28.9 14.4 122 16-154 529-671 (726)
368 PF01695 IstB_IS21: IstB-like 47.5 31 0.00067 29.7 4.4 45 17-61 47-91 (178)
369 PRK12724 flagellar biosynthesi 47.5 84 0.0018 31.3 7.7 44 17-60 223-267 (432)
370 PF02585 PIG-L: GlcNAc-PI de-N 47.4 69 0.0015 25.6 6.2 22 33-54 13-34 (128)
371 COG2159 Predicted metal-depend 47.3 81 0.0018 29.7 7.4 104 253-371 98-201 (293)
372 TIGR00750 lao LAO/AO transport 47.1 1.3E+02 0.0029 28.3 9.0 40 18-57 35-74 (300)
373 PRK07414 cob(I)yrinic acid a,c 46.8 1.9E+02 0.0041 24.9 9.3 35 18-52 22-56 (178)
374 TIGR00521 coaBC_dfp phosphopan 46.8 29 0.00064 34.1 4.5 46 17-63 3-48 (390)
375 cd00532 MGS-like MGS-like doma 46.8 1.4E+02 0.003 23.3 8.4 32 30-63 10-41 (112)
376 PF03446 NAD_binding_2: NAD bi 46.8 22 0.00049 30.0 3.4 31 18-53 2-32 (163)
377 TIGR01380 glut_syn glutathione 46.5 29 0.00064 33.0 4.4 40 18-57 1-43 (312)
378 PRK14077 pnk inorganic polypho 46.4 32 0.00068 32.3 4.5 53 363-435 65-121 (287)
379 TIGR02201 heptsyl_trn_III lipo 46.3 2.5E+02 0.0055 26.9 11.0 100 18-156 182-287 (344)
380 PF03701 UPF0181: Uncharacteri 46.0 64 0.0014 21.1 4.4 34 434-471 10-43 (51)
381 CHL00076 chlB photochlorophyll 45.9 1.1E+02 0.0025 31.4 8.8 27 126-155 373-399 (513)
382 TIGR00379 cobB cobyrinic acid 45.9 2.2E+02 0.0048 28.7 10.8 106 20-159 2-121 (449)
383 PRK05579 bifunctional phosphop 45.4 33 0.00072 33.9 4.7 46 16-62 5-50 (399)
384 PRK02649 ppnK inorganic polyph 44.9 32 0.00069 32.6 4.3 54 362-435 68-125 (305)
385 cd01977 Nitrogenase_VFe_alpha 44.9 45 0.00098 33.2 5.7 27 126-155 357-383 (415)
386 TIGR01281 DPOR_bchL light-inde 44.9 38 0.00083 31.2 4.9 36 18-53 1-36 (268)
387 TIGR02699 archaeo_AfpA archaeo 44.8 37 0.00079 29.2 4.3 35 28-62 9-45 (174)
388 TIGR03877 thermo_KaiC_1 KaiC d 44.5 97 0.0021 28.0 7.4 46 17-62 21-66 (237)
389 KOG0202 Ca2+ transporting ATPa 44.5 1.8E+02 0.0039 31.5 9.8 152 287-470 572-748 (972)
390 TIGR02700 flavo_MJ0208 archaeo 44.2 36 0.00078 30.8 4.4 43 20-62 2-46 (234)
391 KOG0781 Signal recognition par 44.0 46 0.00099 33.3 5.2 47 16-62 377-423 (587)
392 KOG1387 Glycosyltransferase [C 43.8 3.1E+02 0.0067 26.5 21.2 269 126-451 149-446 (465)
393 PRK00885 phosphoribosylamine-- 43.7 74 0.0016 31.7 7.0 29 18-51 1-30 (420)
394 PRK10422 lipopolysaccharide co 43.7 1.1E+02 0.0023 29.7 8.0 29 126-156 261-289 (352)
395 COG1087 GalE UDP-glucose 4-epi 43.6 2.9E+02 0.0063 26.2 13.5 30 18-53 1-32 (329)
396 COG1748 LYS9 Saccharopine dehy 43.3 2.2E+02 0.0048 28.0 9.8 40 18-62 2-43 (389)
397 cd07025 Peptidase_S66 LD-Carbo 43.3 40 0.00086 31.6 4.7 74 298-390 45-120 (282)
398 PRK10586 putative oxidoreducta 43.2 2E+02 0.0044 28.0 9.7 99 32-160 20-122 (362)
399 COG1663 LpxK Tetraacyldisaccha 42.9 64 0.0014 30.8 5.9 35 23-57 55-89 (336)
400 PRK01911 ppnK inorganic polyph 42.6 38 0.00083 31.8 4.4 53 363-435 65-121 (292)
401 PRK01231 ppnK inorganic polyph 42.4 1.2E+02 0.0026 28.6 7.8 53 363-435 63-119 (295)
402 PF02558 ApbA: Ketopantoate re 42.4 41 0.00089 27.7 4.3 28 36-63 12-39 (151)
403 PRK08125 bifunctional UDP-gluc 42.4 1.9E+02 0.0041 30.9 10.2 32 18-54 1-33 (660)
404 PF08433 KTI12: Chromatin asso 42.1 1.7E+02 0.0036 27.2 8.5 107 19-166 3-115 (270)
405 PRK11889 flhF flagellar biosyn 42.1 3.6E+02 0.0079 26.8 14.1 42 16-57 240-281 (436)
406 TIGR01918 various_sel_PB selen 41.9 40 0.00087 33.1 4.5 43 109-155 62-114 (431)
407 TIGR01917 gly_red_sel_B glycin 41.9 40 0.00087 33.1 4.5 43 109-155 62-114 (431)
408 cd08551 Fe-ADH iron-containing 41.7 2.9E+02 0.0062 27.0 10.7 24 34-57 11-35 (370)
409 PRK13849 putative crown gall t 41.6 2.7E+02 0.0058 25.1 10.7 40 19-58 3-43 (231)
410 COG2099 CobK Precorrin-6x redu 41.6 94 0.002 28.4 6.4 105 34-155 117-229 (257)
411 PRK10490 sensor protein KdpD; 41.4 1.3E+02 0.0028 33.5 8.9 39 17-55 24-62 (895)
412 COG1348 NifH Nitrogenase subun 41.2 63 0.0014 29.2 5.1 44 18-61 2-45 (278)
413 TIGR00345 arsA arsenite-activa 41.2 1.4E+02 0.0031 27.9 8.1 25 35-59 3-27 (284)
414 PRK06027 purU formyltetrahydro 41.1 2.6E+02 0.0056 26.2 9.7 36 16-54 88-125 (286)
415 PRK05114 hypothetical protein; 41.1 74 0.0016 21.4 4.2 33 434-470 10-42 (59)
416 cd02065 B12-binding_like B12 b 40.9 66 0.0014 25.3 5.2 43 20-62 2-44 (125)
417 TIGR00682 lpxK tetraacyldisacc 40.9 94 0.002 29.6 6.8 34 24-57 37-70 (311)
418 KOG0832 Mitochondrial/chloropl 40.6 40 0.00087 30.0 3.8 115 26-160 89-208 (251)
419 COG1893 ApbA Ketopantoate redu 40.4 47 0.001 31.5 4.8 48 18-84 1-48 (307)
420 PLN00016 RNA-binding protein; 40.3 34 0.00073 33.5 3.9 39 17-55 52-90 (378)
421 cd01141 TroA_d Periplasmic bin 40.2 44 0.00095 28.7 4.3 31 126-156 68-100 (186)
422 TIGR01007 eps_fam capsular exo 40.2 56 0.0012 28.7 5.0 40 18-57 17-58 (204)
423 PRK08309 short chain dehydroge 40.2 2.4E+02 0.0052 24.2 10.7 32 18-54 1-32 (177)
424 PHA02754 hypothetical protein; 39.8 45 0.00098 22.3 3.1 26 426-451 5-30 (67)
425 PRK09219 xanthine phosphoribos 39.6 63 0.0014 28.2 5.0 30 126-155 49-80 (189)
426 cd08171 GlyDH-like2 Glycerol d 39.5 2.6E+02 0.0055 27.0 9.8 35 126-160 77-114 (345)
427 COG0503 Apt Adenine/guanine ph 39.4 62 0.0013 27.9 4.9 29 126-154 52-82 (179)
428 cd01017 AdcA Metal binding pro 39.4 2.8E+02 0.006 25.8 9.8 42 111-156 208-251 (282)
429 PRK13896 cobyrinic acid a,c-di 39.1 3.8E+02 0.0082 26.9 10.9 39 19-57 3-43 (433)
430 TIGR03371 cellulose_yhjQ cellu 38.9 2.9E+02 0.0063 24.8 11.9 37 20-56 4-41 (246)
431 cd07035 TPP_PYR_POX_like Pyrim 38.8 81 0.0018 26.1 5.6 28 363-390 60-93 (155)
432 PRK02231 ppnK inorganic polyph 38.7 38 0.00082 31.5 3.7 51 363-433 43-97 (272)
433 PRK05784 phosphoribosylamine-- 38.6 42 0.00091 34.2 4.3 31 18-53 1-33 (486)
434 PRK01185 ppnK inorganic polyph 38.5 51 0.0011 30.7 4.5 53 363-435 53-106 (271)
435 cd01122 GP4d_helicase GP4d_hel 38.3 2E+02 0.0043 26.4 8.6 43 18-60 31-74 (271)
436 PLN03064 alpha,alpha-trehalose 38.3 95 0.0021 34.4 7.1 102 350-470 446-560 (934)
437 cd07038 TPP_PYR_PDC_IPDC_like 38.1 1.4E+02 0.003 25.2 6.8 28 363-390 60-93 (162)
438 KOG3339 Predicted glycosyltran 38.0 2.7E+02 0.0058 24.2 8.3 25 19-44 40-64 (211)
439 PRK06718 precorrin-2 dehydroge 37.8 2.8E+02 0.006 24.4 9.0 144 285-451 10-165 (202)
440 COG2084 MmsB 3-hydroxyisobutyr 37.8 44 0.00096 31.2 4.0 34 18-56 1-34 (286)
441 PRK08939 primosomal protein Dn 37.7 64 0.0014 30.6 5.2 45 18-62 157-201 (306)
442 PF13419 HAD_2: Haloacid dehal 37.6 1.1E+02 0.0023 25.4 6.3 92 34-154 82-176 (176)
443 PRK04539 ppnK inorganic polyph 37.6 44 0.00096 31.5 4.0 53 363-435 69-125 (296)
444 PRK03708 ppnK inorganic polyph 37.2 46 0.001 31.1 4.0 52 363-434 58-112 (277)
445 TIGR02114 coaB_strep phosphopa 37.0 29 0.00063 31.3 2.6 20 34-53 28-47 (227)
446 TIGR01005 eps_transp_fam exopo 37.0 3.8E+02 0.0082 29.2 11.7 40 17-56 545-586 (754)
447 TIGR00745 apbA_panE 2-dehydrop 36.9 39 0.00085 31.5 3.7 28 36-63 5-32 (293)
448 cd07062 Peptidase_S66_mccF_lik 36.6 55 0.0012 31.1 4.5 74 298-390 49-124 (308)
449 PRK10964 ADP-heptose:LPS hepto 36.4 93 0.002 29.6 6.2 29 126-156 252-280 (322)
450 PRK03767 NAD(P)H:quinone oxido 36.4 66 0.0014 28.2 4.8 37 18-54 2-40 (200)
451 PRK00843 egsA NAD(P)-dependent 36.4 3E+02 0.0066 26.6 9.8 44 112-159 76-122 (350)
452 PRK03372 ppnK inorganic polyph 36.4 50 0.0011 31.3 4.2 54 362-435 72-129 (306)
453 TIGR01162 purE phosphoribosyla 36.2 2.6E+02 0.0057 23.5 8.9 21 432-452 128-148 (156)
454 PRK06756 flavodoxin; Provision 36.2 67 0.0015 26.5 4.6 36 18-53 2-38 (148)
455 PRK06835 DNA replication prote 36.2 59 0.0013 31.2 4.7 44 18-61 184-227 (329)
456 PRK13982 bifunctional SbtC-lik 36.1 56 0.0012 33.1 4.6 46 17-63 70-115 (475)
457 PF04244 DPRP: Deoxyribodipyri 36.1 52 0.0011 29.6 4.1 26 30-55 47-72 (224)
458 PTZ00445 p36-lilke protein; Pr 36.0 2.7E+02 0.0058 24.9 8.2 30 29-58 74-104 (219)
459 PRK00207 sulfur transfer compl 36.0 68 0.0015 25.9 4.4 40 18-57 1-44 (128)
460 PRK06719 precorrin-2 dehydroge 36.0 66 0.0014 27.0 4.5 40 16-61 12-51 (157)
461 PRK09435 membrane ATPase/prote 35.8 4.1E+02 0.0088 25.6 12.0 43 16-58 55-97 (332)
462 PRK03378 ppnK inorganic polyph 35.7 62 0.0013 30.5 4.7 53 363-435 64-120 (292)
463 PRK14477 bifunctional nitrogen 35.7 54 0.0012 36.4 4.9 28 126-156 388-415 (917)
464 PF07991 IlvN: Acetohydroxy ac 35.6 57 0.0012 27.6 3.9 42 17-63 4-47 (165)
465 TIGR02329 propionate_PrpR prop 35.5 2.9E+02 0.0062 28.6 9.8 42 109-157 131-172 (526)
466 PRK14569 D-alanyl-alanine synt 35.0 77 0.0017 29.9 5.3 38 16-53 2-43 (296)
467 PRK13604 luxD acyl transferase 34.9 80 0.0017 29.9 5.3 35 17-51 36-70 (307)
468 PLN02285 methionyl-tRNA formyl 34.9 2.8E+02 0.0061 26.7 9.1 33 126-158 92-125 (334)
469 TIGR00853 pts-lac PTS system, 34.8 1.1E+02 0.0024 23.2 5.1 38 17-54 3-40 (95)
470 PRK13010 purU formyltetrahydro 34.8 3.5E+02 0.0075 25.4 9.5 44 111-156 106-149 (289)
471 TIGR02990 ectoine_eutA ectoine 34.7 1.9E+02 0.0041 26.3 7.5 101 31-153 105-211 (239)
472 COG3349 Uncharacterized conser 34.6 41 0.00088 33.9 3.4 34 18-56 1-34 (485)
473 PF03853 YjeF_N: YjeF-related 34.6 85 0.0018 26.7 5.0 35 16-51 24-58 (169)
474 PF06745 KaiC: KaiC; InterPro 34.6 1.4E+02 0.003 26.6 6.8 47 17-63 19-66 (226)
475 PRK00094 gpsA NAD(P)H-dependen 34.5 49 0.0011 31.5 3.9 32 18-54 2-33 (325)
476 cd02040 NifH NifH gene encodes 34.5 72 0.0016 29.3 5.0 38 18-55 2-39 (270)
477 PRK14075 pnk inorganic polypho 34.4 65 0.0014 29.7 4.5 54 362-435 41-95 (256)
478 TIGR01861 ANFD nitrogenase iro 34.3 2.4E+02 0.0051 29.1 8.9 26 126-154 397-422 (513)
479 cd06320 PBP1_allose_binding Pe 34.3 3.2E+02 0.007 24.7 9.4 30 126-155 56-89 (275)
480 PRK04020 rps2P 30S ribosomal p 34.3 26 0.00056 30.9 1.8 35 126-160 113-149 (204)
481 TIGR01012 Sa_S2_E_A ribosomal 34.2 26 0.00057 30.7 1.8 35 126-160 107-143 (196)
482 PF06418 CTP_synth_N: CTP synt 34.1 55 0.0012 30.0 3.8 41 18-58 1-44 (276)
483 PLN02929 NADH kinase 33.9 49 0.0011 31.2 3.7 66 362-435 64-138 (301)
484 KOG2825 Putative arsenite-tran 33.9 3.2E+02 0.007 25.1 8.4 47 18-64 19-66 (323)
485 cd00858 GlyRS_anticodon GlyRS 33.8 1E+02 0.0022 24.4 5.2 58 3-60 6-70 (121)
486 COG2099 CobK Precorrin-6x redu 33.8 80 0.0017 28.8 4.8 91 18-155 3-100 (257)
487 PLN02948 phosphoribosylaminoim 33.8 4.4E+02 0.0095 27.6 11.0 145 286-455 410-563 (577)
488 PRK03501 ppnK inorganic polyph 33.7 66 0.0014 29.8 4.4 53 364-435 41-98 (264)
489 PRK12723 flagellar biosynthesi 33.7 3.4E+02 0.0073 26.8 9.5 45 17-61 174-222 (388)
490 PLN02240 UDP-glucose 4-epimera 33.7 67 0.0015 30.8 4.8 34 16-53 4-37 (352)
491 COG3195 Uncharacterized protei 33.5 1.5E+02 0.0033 25.0 5.9 89 356-448 68-163 (176)
492 PRK15059 tartronate semialdehy 33.4 84 0.0018 29.5 5.3 32 18-54 1-32 (292)
493 cd08172 GlyDH-like1 Glycerol d 33.3 3.7E+02 0.0081 25.9 9.9 45 112-160 65-112 (347)
494 COG2210 Peroxiredoxin family p 33.0 2.7E+02 0.0059 22.8 7.8 40 23-62 9-48 (137)
495 KOG1509 Predicted nucleic acid 32.7 1.1E+02 0.0025 26.5 5.3 77 43-133 7-83 (209)
496 cd01421 IMPCH Inosine monophos 32.7 2.8E+02 0.0061 24.1 7.7 30 32-63 11-40 (187)
497 TIGR01915 npdG NADPH-dependent 32.7 53 0.0011 29.3 3.6 31 18-53 1-32 (219)
498 cd02033 BchX Chlorophyllide re 32.6 1E+02 0.0022 29.6 5.6 46 12-57 26-71 (329)
499 cd06559 Endonuclease_V Endonuc 32.6 42 0.0009 29.8 2.8 39 112-155 83-128 (208)
500 COG0467 RAD55 RecA-superfamily 32.4 1.2E+02 0.0027 27.7 6.2 47 17-63 23-69 (260)
No 1
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-68 Score=525.54 Aligned_cols=430 Identities=31% Similarity=0.573 Sum_probs=343.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
+.||+++|++++||++|++.||+.|+.+|++|||++++.+...+.+.. ...++++|+.+|++.+.. ...+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~---------~~~~~i~~v~lp~g~~~~-~~~~ 75 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL---------DPKLGITFMSISDGQDDD-PPRD 75 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc---------CCCCCEEEEECCCCCCCC-cccc
Confidence 469999999999999999999999999999999999998876665431 112379999999877532 2223
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCC
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGI 176 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~ 176 (471)
+..+...+...+.+.++++++++... .++++||+|.+..|+..+|+++|||++.++++++..+..+++++.....+.
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~~---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDED---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcCC---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 44555555556888899998876431 245999999999999999999999999999999988887777665443332
Q ss_pred CCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhh--------
Q 012083 177 ISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANK-------- 248 (471)
Q Consensus 177 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~-------- 248 (471)
.+..+.+...+.+..+|+++.++..+++ .++..........+.+.+..+...+++.+++||+.+||+....
T Consensus 153 ~~~~~~~~~~~~~~~~Pg~~~l~~~dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 153 ISETGCPRQLEKICVLPEQPLLSTEDLP-WLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred cccccccccccccccCCCCCCCChhhCc-chhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcc
Confidence 2211112111223367888888888888 4332221122234445555566778999999999999985333
Q ss_pred -hCCCcceeccccCCCCCC---CCCCcCcchhcccccCCCCCcEEEEecCccc-cCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012083 249 -ILPSIIPVGPLIANGQPT---GNFWSEDLTCLSWLDKQPPGSVIYAAFGSIS-KLSQQQFNELALGLELAGQPFLCGVR 323 (471)
Q Consensus 249 -~~~~~~~vGp~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~ 323 (471)
..+++++|||++...... ...++.+.+|.+||+.++++++|||||||+. ..+.+++.+++.+|++++++|||+++
T Consensus 232 ~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~ 311 (448)
T PLN02562 232 GQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLN 311 (448)
T ss_pred ccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 246899999998754211 1123456678899999988889999999985 67899999999999999999999997
Q ss_pred CCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHh
Q 012083 324 PGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICD 403 (471)
Q Consensus 324 ~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~ 403 (471)
.. ....+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 312 ~~----~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~ 387 (448)
T PLN02562 312 PV----WREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD 387 (448)
T ss_pred CC----chhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH
Confidence 53 22358889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 404 DWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 404 ~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.+|+|+.+. .++.++|.++|+++|.|++||+||++++++++++ .+||||++++++||++++
T Consensus 388 ~~g~g~~~~-----~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 388 VWKIGVRIS-----GFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HhCceeEeC-----CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 469998883 4799999999999999999999999999999887 668999999999999875
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.8e-67 Score=513.50 Aligned_cols=431 Identities=27% Similarity=0.451 Sum_probs=340.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-Ccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED-DRK 95 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 95 (471)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... . ....+++|..+|+++++.. ...
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~----------~~~~~i~~~~ip~glp~~~~~~~ 74 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S----------DDFTDFQFVTIPESLPESDFKNL 74 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c----------cCCCCeEEEeCCCCCCccccccc
Confidence 57999999999999999999999999999999999998764210 0 1113699999998887641 222
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAG 175 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 175 (471)
....++..+...+.+.++++++++..... .++++||+|.+..|+..+|+++|||++.+++++++.+..+++.+..+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~-~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~ 153 (451)
T PLN02410 75 GPIEFLHKLNKECQVSFKDCLGQLVLQQG-NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANN 153 (451)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccC-CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhcc
Confidence 34466666666778888888887642111 46799999999999999999999999999999999888777655544332
Q ss_pred C-CCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC----
Q 012083 176 I-ISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL---- 250 (471)
Q Consensus 176 ~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~---- 250 (471)
. .+.... ..+....+|++++++..+++ .+.... ...+...+... ....+++.+++||+.+||+......
T Consensus 154 ~~~~~~~~--~~~~~~~iPg~~~~~~~dlp-~~~~~~--~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~ 227 (451)
T PLN02410 154 VLAPLKEP--KGQQNELVPEFHPLRCKDFP-VSHWAS--LESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQL 227 (451)
T ss_pred CCCCcccc--ccCccccCCCCCCCChHHCc-chhcCC--cHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhcc
Confidence 1 110110 01122357888888888877 332211 11122222222 2346799999999999998766553
Q ss_pred -CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Q 012083 251 -PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFING 329 (471)
Q Consensus 251 -~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 329 (471)
+++++|||++............+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++.+|||+++.....+
T Consensus 228 ~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~ 307 (451)
T PLN02410 228 QIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRG 307 (451)
T ss_pred CCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccc
Confidence 5799999998643211111223456889999998889999999999999999999999999999999999998431111
Q ss_pred --CCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcc
Q 012083 330 --SSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKI 407 (471)
Q Consensus 330 --~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 407 (471)
....+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+
T Consensus 308 ~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~ 387 (451)
T PLN02410 308 SEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKI 387 (451)
T ss_pred cchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCe
Confidence 123489999999999999999999999999999999999999999999999999999999999999999999885699
Q ss_pred eeeecCCCCCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 408 GLWLEPDDNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 408 G~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
|+.+. ..+++++|.++|+++|.++ +||+||+++++++++++.+||||+.++.+||++++
T Consensus 388 G~~~~----~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~ 449 (451)
T PLN02410 388 GIQVE----GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMR 449 (451)
T ss_pred eEEeC----CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99995 5689999999999999875 79999999999999999999999999999999875
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.9e-66 Score=511.07 Aligned_cols=447 Identities=31% Similarity=0.504 Sum_probs=346.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-CCcc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE-DDRK 95 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~ 95 (471)
+.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+.....-..........++|..+|++++.. +...
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~~ 86 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRRQ 86 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccccc
Confidence 579999999999999999999999999999999999997666554210000000000112247888788877654 2233
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAG 175 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 175 (471)
++..++..+...+.+.++++++.+.... .+++|||+|.++.|+..+|+++|||.+.+++++++.+..+++++ .+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~----~~ 160 (480)
T PLN02555 87 DLDLYLPQLELVGKREIPNLVKRYAEQG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY----HG 160 (480)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHhccC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----hc
Confidence 4555666666677888999988764322 34599999999999999999999999999999999888877753 22
Q ss_pred CCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC---CC
Q 012083 176 IISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL---PS 252 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~---~~ 252 (471)
..+.......... ..+|++|.++..+++ .++........+.+.+.+..+...+++.+++||+.+||....... .+
T Consensus 161 ~~~~~~~~~~~~~-~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 238 (480)
T PLN02555 161 LVPFPTETEPEID-VQLPCMPLLKYDEIP-SFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLCP 238 (480)
T ss_pred CCCcccccCCCce-eecCCCCCcCHhhCc-ccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCCC
Confidence 1110000001111 258999989999998 444322122233444445555678899999999999998766543 24
Q ss_pred cceeccccCCCCC--C---CCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCC
Q 012083 253 IIPVGPLIANGQP--T---GNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFI 327 (471)
Q Consensus 253 ~~~vGp~~~~~~~--~---~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 327 (471)
++.|||+...... . ...+..+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||++++...
T Consensus 239 v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~ 318 (480)
T PLN02555 239 IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHK 318 (480)
T ss_pred EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcc
Confidence 8999999754211 0 1113345789999999988889999999999999999999999999999999999974311
Q ss_pred C--CCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhh
Q 012083 328 N--GSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDW 405 (471)
Q Consensus 328 ~--~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 405 (471)
. .....+|+++.+++++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|++.||+.||+++++.|
T Consensus 319 ~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~ 398 (480)
T PLN02555 319 DSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVF 398 (480)
T ss_pred cccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHh
Confidence 1 11235889999999999999999999999999999999999999999999999999999999999999999999867
Q ss_pred cceeeecCC--CCCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 012083 406 KIGLWLEPD--DNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471 (471)
Q Consensus 406 G~G~~~~~~--~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 471 (471)
|+|+.+... ....+++++|.++|+++|.++ ++|+||++|+++.++++.+||||++++.+||+++++
T Consensus 399 gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 399 KTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred CceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 999999421 124689999999999999764 799999999999999999999999999999999863
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.1e-66 Score=506.69 Aligned_cols=424 Identities=29% Similarity=0.532 Sum_probs=339.2
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE- 91 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 91 (471)
|++++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|+.+|++++..
T Consensus 1 ~~~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-----------~~~~i~~~~ipdglp~~~ 69 (449)
T PLN02173 1 MEKMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-----------PSSPISIATISDGYDQGG 69 (449)
T ss_pred CCCCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-----------CCCCEEEEEcCCCCCCcc
Confidence 667788999999999999999999999999999999999999865544221 11369999999988763
Q ss_pred -CCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCe-eEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchh
Q 012083 92 -DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKI-TCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIP 169 (471)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~p-D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 169 (471)
+...+...++..+...+.+.++++++.+... .+| +|||+|.+..|+..+|+++|||.+.+++++++....+++ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~ 145 (449)
T PLN02173 70 FSSAGSVPEYLQNFKTFGSKTVADIIRKHQST---DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-S 145 (449)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHHhhcc---CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-H
Confidence 2233456777777777888999999876432 245 999999999999999999999999999988777655443 1
Q ss_pred hhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh
Q 012083 170 KFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI 249 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 249 (471)
... .+ .....+|++|.++..+++ .++............+.+......+++.+++||+.+||+.....
T Consensus 146 ~~~-~~-----------~~~~~~pg~p~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 212 (449)
T PLN02173 146 YIN-NG-----------SLTLPIKDLPLLELQDLP-TFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENEL 212 (449)
T ss_pred Hhc-cC-----------CccCCCCCCCCCChhhCC-hhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHH
Confidence 111 00 011236888888888888 44332222222334444555667889999999999999876655
Q ss_pred C---CCcceeccccCCC-------CCCC---CCC--cCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC
Q 012083 250 L---PSIIPVGPLIANG-------QPTG---NFW--SEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA 314 (471)
Q Consensus 250 ~---~~~~~vGp~~~~~-------~~~~---~~~--~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 314 (471)
. ++++.|||+.+.. .... +.+ ..+.+|.+||+.++++++|||||||+...+.+++.+++.+| .
T Consensus 213 ~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 213 LSKVCPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred HHhcCCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 4 4799999997421 0000 011 22456999999999899999999999999999999999999 6
Q ss_pred CCCEEEEEcCCCCCCCCCCCCchhHHhh-CCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccc
Q 012083 315 GQPFLCGVRPGFINGSSTNNPDGLVAKV-ADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHD 393 (471)
Q Consensus 315 ~~~~i~~~~~~~~~~~~~~lp~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 393 (471)
+.+|+|+++.. ....+|++|.+++ ++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|++.|
T Consensus 291 ~~~flWvvr~~----~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 366 (449)
T PLN02173 291 NFSYLWVVRAS----EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTD 366 (449)
T ss_pred CCCEEEEEecc----chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhc
Confidence 78899999753 2345888999888 688999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhcceeeecCCC-CCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012083 394 HLYIKSCICDDWKIGLWLEPDD-NGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQI 469 (471)
Q Consensus 394 Q~~na~~v~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 469 (471)
|+.||+++++.||+|+.+..++ ...++.++|.++++++|.|+ ++|+||++++++.++++.+||||++++++||+++
T Consensus 367 Q~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 367 QPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred chHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 9999999998679999986432 13479999999999999774 7999999999999999999999999999999987
Q ss_pred h
Q 012083 470 T 470 (471)
Q Consensus 470 ~ 470 (471)
.
T Consensus 447 ~ 447 (449)
T PLN02173 447 Q 447 (449)
T ss_pred c
Confidence 4
No 5
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=7.2e-66 Score=504.97 Aligned_cols=429 Identities=26% Similarity=0.464 Sum_probs=338.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcc-hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFI-CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED- 92 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 92 (471)
++.||+++|++++||++|++.||+.|+. +|+.|||++++.+ .....+.. ...++++|+.++++++...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~---------~~~~~i~~~~i~dglp~g~~ 72 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH---------NNVENLSFLTFSDGFDDGVI 72 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC---------CCCCCEEEEEcCCCCCCccc
Confidence 4579999999999999999999999996 7999999999854 21111110 1123699999998887652
Q ss_pred -CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhh
Q 012083 93 -DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKF 171 (471)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 171 (471)
...+...++......+.+.++++++++...+ .++++||+|.+..|+..+|+++|||.+.+++++++.+..+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 73 SNTDDVQNRLVNFERNGDKALSDFIEANLNGD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred cccccHHHHHHHHHHhccHHHHHHHHHhhccC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 2334555666677788889999998864322 3469999999999999999999999999999999988887764311
Q ss_pred hhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhc--cCcEEEEcchhhhchhhhhh
Q 012083 172 IEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIE--ASDRILCTWFHELAPSANKI 249 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~l~~~~~~~ 249 (471)
......+|+++.++..+++ .++........+...+.+..+... .++.+++||+.+||......
T Consensus 151 --------------~~~~~~iPglp~l~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~ 215 (455)
T PLN02152 151 --------------NNSVFEFPNLPSLEIRDLP-SFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTA 215 (455)
T ss_pred --------------CCCeeecCCCCCCchHHCc-hhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHh
Confidence 0011257888888888888 544332222223344444444332 35799999999999987776
Q ss_pred C--CCcceeccccCCCC---CC-CC--C-CcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEE
Q 012083 250 L--PSIIPVGPLIANGQ---PT-GN--F-WSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLC 320 (471)
Q Consensus 250 ~--~~~~~vGp~~~~~~---~~-~~--~-~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 320 (471)
. .+++.|||+.+... .. .. . +..+.++.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||
T Consensus 216 l~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 216 IPNIEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred hhcCCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 5 36999999975321 00 01 1 123457999999998889999999999999999999999999999999999
Q ss_pred EEcCCCCC-----CC---CCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeeccccc
Q 012083 321 GVRPGFIN-----GS---STNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGH 392 (471)
Q Consensus 321 ~~~~~~~~-----~~---~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 392 (471)
++++.... +. ...+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 296 v~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 375 (455)
T PLN02152 296 VITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWS 375 (455)
T ss_pred EEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99753111 01 11257899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 393 DHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 393 DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
||+.||+++++.||+|+.+..+..+.++.++|.++|+++|+|+ +||+||++++++.++++.+||||++++++||++++
T Consensus 376 DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 376 DQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred cchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhC
Confidence 9999999999856777777543234579999999999999875 59999999999999999999999999999999874
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2e-65 Score=502.79 Aligned_cols=439 Identities=22% Similarity=0.376 Sum_probs=333.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCcch-hhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCR--IKVTFVTTEFIC-ERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE- 91 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 91 (471)
++.||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+...... . ....++++|+.+|+.....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~-~----~~~~~~i~~~~lp~~~~~~~ 76 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKS-I----ASSQPFVRFIDVPELEEKPT 76 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhh-c----cCCCCCeEEEEeCCCCCCCc
Confidence 668999999999999999999999999998 999999998765 222221110 0 0112369999999644211
Q ss_pred -CCcccHHHHHHHHHhhccHH----HHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHh
Q 012083 92 -DDRKDEAKMTRSISKVMPGY----LEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIM 166 (471)
Q Consensus 92 -~~~~~~~~~~~~~~~~~~~~----~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 166 (471)
+...+...++......+.+. +.+++++..... .+++|||+|.++.|+..+|+++|||.+.++++++..+..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~ 154 (468)
T PLN02207 77 LGGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQ 154 (468)
T ss_pred cccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 12234444444444455443 444444321111 23499999999999999999999999999999998888877
Q ss_pred chhhhhhhCCCCCCcccccccccccCCCC-CCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchh
Q 012083 167 NIPKFIEAGIISSDGIVIKNEKIELSPYL-PAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPS 245 (471)
Q Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 245 (471)
+.+......... ..+..+ ....+|++ +.++..+++ .++..... ...+.+......+++.+++||+++||++
T Consensus 155 ~~~~~~~~~~~~--~~~~~~-~~~~vPgl~~~l~~~dlp-~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 155 YLADRHSKDTSV--FVRNSE-EMLSIPGFVNPVPANVLP-SALFVEDG----YDAYVKLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred Hhhhcccccccc--CcCCCC-CeEECCCCCCCCChHHCc-chhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 765432110000 001111 22358998 678898888 43322111 2333444456788999999999999987
Q ss_pred hh------hhCCCcceeccccCCCCCCCC--CCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCC
Q 012083 246 AN------KILPSIIPVGPLIANGQPTGN--FWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQP 317 (471)
Q Consensus 246 ~~------~~~~~~~~vGp~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~ 317 (471)
.. +..|+++.|||++........ ....+.+|.+||++++++++|||||||+...+.+++.+++.+|+.++++
T Consensus 227 ~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~ 306 (468)
T PLN02207 227 SVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYR 306 (468)
T ss_pred HHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCc
Confidence 33 345789999999864321111 0113367999999998889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhh
Q 012083 318 FLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYI 397 (471)
Q Consensus 318 ~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 397 (471)
|||++++.. ....+.+|++|.+++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 307 flW~~r~~~-~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N 385 (468)
T PLN02207 307 FLWSLRTEE-VTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLN 385 (468)
T ss_pred EEEEEeCCC-ccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhh
Confidence 999998531 1123458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeeecCC----CCCCcCHhHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 398 KSCICDDWKIGLWLEPD----DNGIIGRHEIKRKVDELLS--NDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 398 a~~v~~~~G~G~~~~~~----~~~~~~~~~l~~~i~~ll~--~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
|+++++.+|+|+.+..+ ....++.++|.++|+++|. +++||+||+++++.+++++.+||||++++++||++++
T Consensus 386 a~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 386 AFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred HHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99877658999977421 1235699999999999997 6799999999999999999999999999999999885
No 7
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.3e-65 Score=507.83 Aligned_cols=440 Identities=22% Similarity=0.384 Sum_probs=330.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhH--HhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCR--IKVTFVTTEFICERIK--ESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~Vt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+..... +...... .....++++|+.+|++.++..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~lp~~~~~~~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASL---SASSEDRLRYEVISAGDQPTT 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhc---ccCCCCCeEEEEcCCCCCCcc
Confidence 68999999999999999999999999998 8899999987654221 1000000 001123699999997764221
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcc-c-CCCC-eeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchh
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQ-E-EDEK-ITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIP 169 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-~-~~~~-pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 169 (471)
....+.. +...+.+.+++.++++... . .+.+ .+|||+|.++.|+..+|+++|||++.++++++..+..+++++
T Consensus 79 ~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 EDPTFQS----YIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred cchHHHH----HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 1112222 2334455555555554321 0 0023 489999999999999999999999999999999999888876
Q ss_pred hhhhhCCCCCCcccccccccccCCCCC-CCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhh
Q 012083 170 KFIEAGIISSDGIVIKNEKIELSPYLP-AASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANK 248 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~ 248 (471)
.....+..+..+.+..... ..+|+++ +++..+++ .+... ......+.+......+++.+++||+.+||.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~-v~iPgl~~pl~~~dlp-~~~~~----~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~ 228 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVE-LDVPSLTRPYPVKCLP-SVLLS----KEWLPLFLAQARRFREMKGILVNTVAELEPQALK 228 (481)
T ss_pred hhccccccCccccCCCCce-eECCCCCCCCCHHHCC-CcccC----HHHHHHHHHHHHhcccCCEEEEechHHHhHHHHH
Confidence 5432211110011111111 2478874 67878887 33321 1223334444556788999999999999986554
Q ss_pred h-------CCCcceeccccC-CCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEE
Q 012083 249 I-------LPSIIPVGPLIA-NGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLC 320 (471)
Q Consensus 249 ~-------~~~~~~vGp~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 320 (471)
. .+++++|||+.. .........+.+.+|.+|++.+++++||||||||+...+.+++.+++.+|+.++++|||
T Consensus 229 ~l~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW 308 (481)
T PLN02554 229 FFSGSSGDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLW 308 (481)
T ss_pred HHHhcccCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 2 368999999943 22111001233467999999998888999999999999999999999999999999999
Q ss_pred EEcCCCCC----------CCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeeccc
Q 012083 321 GVRPGFIN----------GSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW 390 (471)
Q Consensus 321 ~~~~~~~~----------~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~ 390 (471)
+++..... +....+|++|.+++++|+++++|+||.+||+|++|++|||||||||++||+++|||||++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 309 SLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred EEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCc
Confidence 99753110 01123699999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHH-HHHhhhcceeeecCC--------CCCCcCHhHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012083 391 GHDHLYIKS-CICDDWKIGLWLEPD--------DNGIIGRHEIKRKVDELLS-NDVVRKNALKLKELAQKSVTKEGSSSK 460 (471)
Q Consensus 391 ~~DQ~~na~-~v~~~~G~G~~~~~~--------~~~~~~~~~l~~~i~~ll~-~~~~~~~a~~l~~~~~~~~~~gg~~~~ 460 (471)
++||+.||+ ++++ +|+|+.++.. ....++.++|.++|+++|. |++||+||+++++++++++.+||||+.
T Consensus 389 ~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~ 467 (481)
T PLN02554 389 YAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHT 467 (481)
T ss_pred cccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 999999995 5667 8999998631 1246899999999999996 789999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012083 461 NLEYFIKQIT 470 (471)
Q Consensus 461 ~~~~~~~~~~ 470 (471)
++.+||++++
T Consensus 468 ~l~~lv~~~~ 477 (481)
T PLN02554 468 ALKKFIQDVT 477 (481)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.8e-65 Score=501.38 Aligned_cols=428 Identities=27% Similarity=0.479 Sum_probs=333.6
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHH--HHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 15 KTNVHVLLVSFPAQGHVASLMKLAHR--LADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 15 ~~~~~Il~~~~~~~GH~~p~~~La~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
.++.||+++|+|++||++|++.||+. |++||++|||++++.+.+.+...+ .....+++..+++++++..
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~---------~~~~~~~~~~~~~glp~~~ 76 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE---------KPRRPVDLVFFSDGLPKDD 76 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc---------CCCCceEEEECCCCCCCCc
Confidence 34689999999999999999999999 569999999999998876653321 1124688888888777653
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhh
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFI 172 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 172 (471)
. .+...++..+.+.+.+.++++++. .+||+||+|.++.|+..+|+++|||.+.+++.++..+..+.+.+..
T Consensus 77 ~-~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~- 147 (456)
T PLN02210 77 P-RAPETLLKSLNKVGAKNLSKIIEE-------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK- 147 (456)
T ss_pred c-cCHHHHHHHHHHhhhHHHHHHHhc-------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc-
Confidence 2 244456666666666677777765 6899999999999999999999999999999999888776654321
Q ss_pred hhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC--
Q 012083 173 EAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL-- 250 (471)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~-- 250 (471)
.+..+.. ...+....+|+++.++..+++ .++.... ...+.....+.......++.+++||+.+||.......
T Consensus 148 -~~~~~~~---~~~~~~~~~Pgl~~~~~~dl~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 221 (456)
T PLN02210 148 -TNSFPDL---EDLNQTVELPALPLLEVRDLP-SFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD 221 (456)
T ss_pred -cCCCCcc---cccCCeeeCCCCCCCChhhCC-hhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh
Confidence 1111100 000112347888878888887 4332221 1122223333334456789999999999999776653
Q ss_pred -CCcceeccccCC----C-CC---CC---CCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCE
Q 012083 251 -PSIIPVGPLIAN----G-QP---TG---NFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPF 318 (471)
Q Consensus 251 -~~~~~vGp~~~~----~-~~---~~---~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 318 (471)
+++++|||+++. . .. .. ..+..+.+|.+|++.+++++||||||||....+.+++.+++.+|+.++++|
T Consensus 222 ~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~f 301 (456)
T PLN02210 222 LKPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPF 301 (456)
T ss_pred cCCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 579999999752 1 10 00 012445678999999988899999999999899999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCchhHHhh-CCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhh
Q 012083 319 LCGVRPGFINGSSTNNPDGLVAKV-ADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYI 397 (471)
Q Consensus 319 i~~~~~~~~~~~~~~lp~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 397 (471)
||+++... ....+..|.+++ ++++.+++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.|
T Consensus 302 lw~~~~~~----~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~n 377 (456)
T PLN02210 302 LWVIRPKE----KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPID 377 (456)
T ss_pred EEEEeCCc----cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHH
Confidence 99997531 112345566666 4888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeeecCCC-CCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 398 KSCICDDWKIGLWLEPDD-NGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 398 a~~v~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
|+++++.+|+|+.+..++ .+.++.++|.++|+++|.++ ++|+||++|++..++++++||||++++++||++++
T Consensus 378 a~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 378 ARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999987579999996421 24689999999999999876 49999999999999999999999999999999885
No 9
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.5e-64 Score=499.19 Aligned_cols=439 Identities=26% Similarity=0.388 Sum_probs=329.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC----CCCCCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP----DGLEPE 91 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~ 91 (471)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+.. ...++++++.+| ++++.+
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~---------~~~~~i~~~~lp~P~~~~lPdG 78 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLL---------SKHPSIETLVLPFPSHPSIPSG 78 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhc---------ccCCCeeEEeCCCCCcCCCCCC
Confidence 3689999999999999999999999999999999999998877665431 112357777654 133332
Q ss_pred -CCccc----HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHh
Q 012083 92 -DDRKD----EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIM 166 (471)
Q Consensus 92 -~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 166 (471)
+...+ ....+......+.+.+.+++++. . .+|++||+|.+..|+..+|+++|||++.+++++++.+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~ 153 (477)
T PLN02863 79 VENVKDLPPSGFPLMIHALGELYAPLLSWFRSH---P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMY 153 (477)
T ss_pred CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhC---C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 11111 11222223334455566666542 1 46899999999999999999999999999999999998888
Q ss_pred chhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhh
Q 012083 167 NIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSA 246 (471)
Q Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~ 246 (471)
+++........+ .-......+..+|+++.++..+++ .+.............+.+.......++.+++||+.+||...
T Consensus 154 ~~~~~~~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 230 (477)
T PLN02863 154 SLWREMPTKINP--DDQNEILSFSKIPNCPKYPWWQIS-SLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIY 230 (477)
T ss_pred HHhhcccccccc--cccccccccCCCCCCCCcChHhCc-hhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHH
Confidence 754211100000 000000012347888888888888 43321111112334444444445678889999999999976
Q ss_pred hhhC------CCcceeccccCCCCCC-------CCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHh
Q 012083 247 NKIL------PSIIPVGPLIANGQPT-------GNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLEL 313 (471)
Q Consensus 247 ~~~~------~~~~~vGp~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~ 313 (471)
.... ++++.|||+.+..... ......+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.
T Consensus 231 ~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 231 LEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEK 310 (477)
T ss_pred HHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHh
Confidence 6553 5799999997533100 00111346799999999888999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCCC-CCCCCCCchhHHhhCCCcE-EEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccc
Q 012083 314 AGQPFLCGVRPGFIN-GSSTNNPDGLVAKVADFGK-MVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWG 391 (471)
Q Consensus 314 ~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~nv~-~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~ 391 (471)
++++|||+++..... .....+|++|.+++.++.. +.+|+||.+||+|++|++|||||||||++||+++|||||++|++
T Consensus 311 ~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~ 390 (477)
T PLN02863 311 SGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA 390 (477)
T ss_pred CCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 999999999853211 1223588999888755554 55999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 392 HDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELL-SNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 392 ~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.||+.||+++++.+|+|+.+..+....++.+++.++++++| ++++||+||+++++..++++.+||||++++++||++++
T Consensus 391 ~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~ 470 (477)
T PLN02863 391 ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVV 470 (477)
T ss_pred ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 99999999987548999999532123568999999999999 67899999999999999999999999999999999986
Q ss_pred C
Q 012083 471 E 471 (471)
Q Consensus 471 ~ 471 (471)
+
T Consensus 471 ~ 471 (477)
T PLN02863 471 E 471 (477)
T ss_pred H
Confidence 3
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.9e-64 Score=495.45 Aligned_cols=429 Identities=27% Similarity=0.397 Sum_probs=334.2
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC----C
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD----G 87 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~ 87 (471)
|-..+.||+++|++++||++|++.||+.|+ .+|+.|||++++.+...+.+.. ...++++++.+|. +
T Consensus 1 ~~~~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~---------~~~~~i~~~~lp~p~~~g 71 (481)
T PLN02992 1 MHITKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF---------LNSTGVDIVGLPSPDISG 71 (481)
T ss_pred CCCCCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc---------ccCCCceEEECCCccccC
Confidence 334578999999999999999999999998 7899999999998765543321 1112689998885 3
Q ss_pred CCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhc
Q 012083 88 LEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMN 167 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 167 (471)
+++.. .+....+......+.+.++++++++. .+|++||+|.++.|+..+|+++|||++.++++++..+..+.+
T Consensus 72 lp~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 144 (481)
T PLN02992 72 LVDPS--AHVVTKIGVIMREAVPTLRSKIAEMH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIY 144 (481)
T ss_pred CCCCC--ccHHHHHHHHHHHhHHHHHHHHHhcC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHh
Confidence 43221 12223333344456677888887642 478999999999999999999999999999999988877776
Q ss_pred hhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhh
Q 012083 168 IPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSAN 247 (471)
Q Consensus 168 ~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 247 (471)
+|........+ .....+ ...+|+++.++..+++ ..+.... . .....+.+......+++.+++||+.+||....
T Consensus 145 ~~~~~~~~~~~---~~~~~~-~~~iPg~~~l~~~dlp-~~~~~~~-~-~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l 217 (481)
T PLN02992 145 YPTLDKDIKEE---HTVQRK-PLAMPGCEPVRFEDTL-DAYLVPD-E-PVYRDFVRHGLAYPKADGILVNTWEEMEPKSL 217 (481)
T ss_pred hhhhccccccc---cccCCC-CcccCCCCccCHHHhh-HhhcCCC-c-HHHHHHHHHHHhcccCCEEEEechHHHhHHHH
Confidence 65432211000 000011 2357888888888887 3222111 1 22334445555667899999999999999777
Q ss_pred hhC-----------CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCC
Q 012083 248 KIL-----------PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQ 316 (471)
Q Consensus 248 ~~~-----------~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 316 (471)
... ++++.|||+.+... ....+.+|.+||+.+++++||||||||+..++.+++.+++.+|+.+++
T Consensus 218 ~~l~~~~~~~~~~~~~v~~VGPl~~~~~----~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 218 KSLQDPKLLGRVARVPVYPIGPLCRPIQ----SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred HHHhhccccccccCCceEEecCccCCcC----CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 642 46999999976432 112456799999999888999999999999999999999999999999
Q ss_pred CEEEEEcCCCCC---------------C-CCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhh
Q 012083 317 PFLCGVRPGFIN---------------G-SSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGI 379 (471)
Q Consensus 317 ~~i~~~~~~~~~---------------~-~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal 379 (471)
+|||+++..... . ....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+
T Consensus 294 ~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal 373 (481)
T PLN02992 294 RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESV 373 (481)
T ss_pred CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHH
Confidence 999999642100 0 12358999999998777655 999999999999999999999999999999
Q ss_pred hcCCceeecccccchhhhHHHHH-hhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhh--
Q 012083 380 SMGVPFLCWPWGHDHLYIKSCIC-DDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVT-- 453 (471)
Q Consensus 380 ~~GvP~l~~P~~~DQ~~na~~v~-~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~-- 453 (471)
++|||||++|++.||+.||++++ + +|+|+.++.. ...++.++|.++|+++|.++ ++|++++++++++++++.
T Consensus 374 ~~GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~ 451 (481)
T PLN02992 374 VGGVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSID 451 (481)
T ss_pred HcCCCEEecCccchhHHHHHHHHHH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999996 6 8999999741 14689999999999999763 899999999999999994
Q ss_pred cCCChHHHHHHHHHHHh
Q 012083 454 KEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 454 ~gg~~~~~~~~~~~~~~ 470 (471)
+||||++++++|+++++
T Consensus 452 ~GGSS~~~l~~~v~~~~ 468 (481)
T PLN02992 452 GGGVAHESLCRVTKECQ 468 (481)
T ss_pred CCCchHHHHHHHHHHHH
Confidence 59999999999999875
No 11
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-64 Score=497.57 Aligned_cols=427 Identities=28% Similarity=0.481 Sum_probs=335.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-CC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE-DD 93 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ 93 (471)
+.||+++|+|++||++|++.||++|+.+ ||+|||++++.+...+.+.. ...+++|+.+|++.+.. +.
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~----------~~~gi~fv~lp~~~p~~~~~ 79 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDP----------KPDNIRFATIPNVIPSELVR 79 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccC----------CCCCEEEEECCCCCCCcccc
Confidence 4799999999999999999999999999 99999999999887776531 12479999999865544 22
Q ss_pred cccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhh
Q 012083 94 RKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
..+...++..+.+.+.+.++++++++. .++|+||+|.++.|+..+|+++|||++.++++++..+..+.+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~ 154 (459)
T PLN02448 80 AADFPGFLEAVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQ 154 (459)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhh
Confidence 234556666666667778888887642 378999999999999999999999999999999988777776654332
Q ss_pred hCCCCCCcccc-cccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh---
Q 012083 174 AGIISSDGIVI-KNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI--- 249 (471)
Q Consensus 174 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~--- 249 (471)
.+..+.. .+. ..+....+|+++.+...+++ .+.... .....+.+.+......+++.+++||+.+||+.....
T Consensus 155 ~~~~~~~-~~~~~~~~~~~iPg~~~l~~~dlp-~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~ 230 (459)
T PLN02448 155 NGHFPVE-LSESGEERVDYIPGLSSTRLSDLP-PIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKS 230 (459)
T ss_pred ccCCCCc-cccccCCccccCCCCCCCChHHCc-hhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHh
Confidence 2211100 000 11222357888878888877 433322 112233444445556778899999999999875543
Q ss_pred --CCCcceeccccCCCCC---CCC-CC-cCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEE
Q 012083 250 --LPSIIPVGPLIANGQP---TGN-FW-SEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGV 322 (471)
Q Consensus 250 --~~~~~~vGp~~~~~~~---~~~-~~-~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 322 (471)
.++++.|||+.+.... ... .. +.+.++.+|++.++++++|||||||+...+.+++.+++.+|+.++++|||++
T Consensus 231 ~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~ 310 (459)
T PLN02448 231 KFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVA 310 (459)
T ss_pred hcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 2478899999763211 000 01 1234788999999888999999999988889999999999999999999987
Q ss_pred cCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHH
Q 012083 323 RPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCIC 402 (471)
Q Consensus 323 ~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~ 402 (471)
.+. ..++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 311 ~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~ 381 (459)
T PLN02448 311 RGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIV 381 (459)
T ss_pred cCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 643 13455556678999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeeecCC--CCCCcCHhHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 012083 403 DDWKIGLWLEPD--DNGIIGRHEIKRKVDELLSND-----VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471 (471)
Q Consensus 403 ~~~G~G~~~~~~--~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 471 (471)
+.||+|+.+..+ +...+++++|.++++++|.|+ +||+||+++++++++++.+||||++++++||+++++
T Consensus 382 ~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 382 EDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred HHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 867999888531 124579999999999999763 799999999999999999999999999999999874
No 12
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.9e-64 Score=496.99 Aligned_cols=436 Identities=23% Similarity=0.382 Sum_probs=337.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC----CeEEEEeCCcchh----hhHHhhhcCCCCccCCCCCCeEEEeCCCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCR----IKVTFVTTEFICE----RIKESRQLGSFSEMGDAQQLVRIVPLPDG 87 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 87 (471)
.|.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+........ ....+++|+.+|++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~lp~~ 76 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-----ASGLDIRFHHLPAV 76 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-----cCCCCEEEEECCCC
Confidence 567999999999999999999999999986 7999999876532 2322211000 11126999999976
Q ss_pred CCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhc
Q 012083 88 LEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMN 167 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 167 (471)
..+. ...+...++..+...+.+.++++++.+. .++++||+|.++.|+..+|+++|||++.++++++..+..+++
T Consensus 77 ~~p~-~~e~~~~~~~~~~~~~~~~l~~~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~ 150 (480)
T PLN00164 77 EPPT-DAAGVEEFISRYIQLHAPHVRAAIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLR 150 (480)
T ss_pred CCCC-ccccHHHHHHHHHHhhhHHHHHHHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhh
Confidence 4332 2224445566566677888888887641 367999999999999999999999999999999999988888
Q ss_pred hhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhh
Q 012083 168 IPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSAN 247 (471)
Q Consensus 168 ~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~ 247 (471)
.+...... +. .++..... ..+|+++.++..+++ .+..... .. ....+....+...+++.+++||+.+||+...
T Consensus 151 ~~~~~~~~--~~-~~~~~~~~-~~iPGlp~l~~~dlp-~~~~~~~-~~-~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 223 (480)
T PLN00164 151 LPALDEEV--AV-EFEEMEGA-VDVPGLPPVPASSLP-APVMDKK-SP-NYAWFVYHGRRFMEAAGIIVNTAAELEPGVL 223 (480)
T ss_pred hhhhcccc--cC-cccccCcc-eecCCCCCCChHHCC-chhcCCC-cH-HHHHHHHHHHhhhhcCEEEEechHHhhHHHH
Confidence 76532110 00 01110111 247999888888888 4433221 11 1223333345567899999999999998655
Q ss_pred hhC-----------CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCC
Q 012083 248 KIL-----------PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQ 316 (471)
Q Consensus 248 ~~~-----------~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 316 (471)
... ++++.|||+...... ....+.+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~v~~vGPl~~~~~~-~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~ 302 (480)
T PLN00164 224 AAIADGRCTPGRPAPTVYPIGPVISLAFT-PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGH 302 (480)
T ss_pred HHHHhccccccCCCCceEEeCCCcccccc-CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCC
Confidence 442 479999999853221 11234567899999999888999999999999999999999999999999
Q ss_pred CEEEEEcCCCCC--------CCCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceee
Q 012083 317 PFLCGVRPGFIN--------GSSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLC 387 (471)
Q Consensus 317 ~~i~~~~~~~~~--------~~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 387 (471)
+|||+++..... +....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 303 ~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~ 382 (480)
T PLN00164 303 RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAP 382 (480)
T ss_pred CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEe
Confidence 999999853211 112348899999998888777 99999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHhhhcceeeecCCC--CCCcCHhHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHhhcCCChHH
Q 012083 388 WPWGHDHLYIKSCICDDWKIGLWLEPDD--NGIIGRHEIKRKVDELLSND-----VVRKNALKLKELAQKSVTKEGSSSK 460 (471)
Q Consensus 388 ~P~~~DQ~~na~~v~~~~G~G~~~~~~~--~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~gg~~~~ 460 (471)
+|+++||+.||+++++.+|+|+.+..++ .+.+++++|.++|+++|.|+ .+|+||++|++++++++.+||||++
T Consensus 383 ~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~ 462 (480)
T PLN00164 383 WPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYA 462 (480)
T ss_pred CCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999998755489999996421 13479999999999999753 5899999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012083 461 NLEYFIKQIT 470 (471)
Q Consensus 461 ~~~~~~~~~~ 470 (471)
++++||++++
T Consensus 463 ~l~~~v~~~~ 472 (480)
T PLN00164 463 ALQRLAREIR 472 (480)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 13
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.5e-63 Score=493.10 Aligned_cols=443 Identities=24% Similarity=0.424 Sum_probs=320.1
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC---CCCC
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP---DGLE 89 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~ 89 (471)
|+.+++||+++|+|++||++|++.||+.|+.|||+|||++++.+...+++.+...... .+...-.+.+.++| ++++
T Consensus 1 ~~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~-~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MNHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNL-NPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CCCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhccc-CCCCcceEEEeeCCCCcCCCC
Confidence 5667789999999999999999999999999999999999999887776554321100 00111145555565 3455
Q ss_pred CCCCc---------ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHH
Q 012083 90 PEDDR---------KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 90 ~~~~~---------~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..... .....++..+.. ..+.+.+.++++... .+||+||+|.++.|+..+|+++|||.+.+++++++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~---~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLET---TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred CCcccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhc---CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 43111 112233333332 222233333332211 68999999999999999999999999999998887
Q ss_pred HHHHHhchhhhhhhCCCCCCcccccccccccCCCCCC---CCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEc
Q 012083 161 ILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLPA---ASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCT 237 (471)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (471)
....++.+....+... .+..... ..+|+++. ++..+++ .. . ....+..++....+...+++.+++|
T Consensus 156 ~~~~~~~~~~~~~~~~-----~~~~~~~-~~~pg~p~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~vl~N 224 (482)
T PLN03007 156 SLCASYCIRVHKPQKK-----VASSSEP-FVIPDLPGDIVITEEQIN-DA---D-EESPMGKFMKEVRESEVKSFGVLVN 224 (482)
T ss_pred HHHHHHHHHhcccccc-----cCCCCce-eeCCCCCCccccCHHhcC-CC---C-CchhHHHHHHHHHhhcccCCEEEEE
Confidence 7665543321111000 1111111 12566652 3333333 11 1 1122344444444556788999999
Q ss_pred chhhhchhhhhhC-----CCcceeccccCCCCCC------C-CCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHH
Q 012083 238 WFHELAPSANKIL-----PSIIPVGPLIANGQPT------G-NFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFN 305 (471)
Q Consensus 238 s~~~l~~~~~~~~-----~~~~~vGp~~~~~~~~------~-~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~ 305 (471)
|+.+|+....+.. .++++|||+....... . .....+.+|.+|++.++++++|||||||+...+.+++.
T Consensus 225 t~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~ 304 (482)
T PLN03007 225 SFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLF 304 (482)
T ss_pred CHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHH
Confidence 9999998766654 3689999986532210 1 11112467899999998889999999999888999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCC-CCCCCCCchhHHhh-CCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCC
Q 012083 306 ELALGLELAGQPFLCGVRPGFIN-GSSTNNPDGLVAKV-ADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGV 383 (471)
Q Consensus 306 ~~~~al~~~~~~~i~~~~~~~~~-~~~~~lp~~~~~~~-~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~Gv 383 (471)
+++.+|+.++++|||+++..... .....+|++|.+++ +.|+++.+|+||.+||+|+++++|||||||||++||+++||
T Consensus 305 ~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GV 384 (482)
T PLN03007 305 EIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGL 384 (482)
T ss_pred HHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCC
Confidence 99999999999999999864211 11235899998887 45556679999999999999999999999999999999999
Q ss_pred ceeecccccchhhhHHHHHhhhcceeeecCC-----CCCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcC
Q 012083 384 PFLCWPWGHDHLYIKSCICDDWKIGLWLEPD-----DNGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKE 455 (471)
Q Consensus 384 P~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~-----~~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~g 455 (471)
|||++|++.||+.||+++++.+++|+.+... +...++.++|.++|+++|.|+ +||+||+++++.+++++.+|
T Consensus 385 P~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 385 PMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred CeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999987545666655311 125689999999999999987 89999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 012083 456 GSSSKNLEYFIKQITE 471 (471)
Q Consensus 456 g~~~~~~~~~~~~~~~ 471 (471)
|||+.++++|++++++
T Consensus 465 GsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 465 GSSFNDLNKFMEELNS 480 (482)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999999864
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-63 Score=485.66 Aligned_cols=429 Identities=25% Similarity=0.435 Sum_probs=323.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEE--EeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCR--IKVTF--VTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
+.||+++|++++||++|++.||+.|+.+| +.||+ ++++.+........ +. .....++++|+.+|++.+..+
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~-~~----~~~~~~~i~~~~lp~~~~~~~ 77 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYI-SS----VSSSFPSITFHHLPAVTPYSS 77 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhh-cc----ccCCCCCeEEEEcCCCCCCCC
Confidence 46999999999999999999999999998 55665 44443322222110 00 001223699999997754221
Q ss_pred ---CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchh
Q 012083 93 ---DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIP 169 (471)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p 169 (471)
...+....+......+.+.++++++++.. . .+++|||+|.++.|+..+|+++|||++.+++++++.+..+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~ 154 (451)
T PLN03004 78 SSTSRHHHESLLLEILCFSNPSVHRTLFSLSR-N--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLP 154 (451)
T ss_pred ccccccCHHHHHHHHHHhhhHHHHHHHHhcCC-C--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHH
Confidence 11233334444555777888888887632 1 34699999999999999999999999999999999998888765
Q ss_pred hhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh
Q 012083 170 KFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI 249 (471)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~ 249 (471)
...... +.... .......+|+++.++..+++ .+..... .....++.+......+++.+++||+.+||......
T Consensus 155 ~~~~~~--~~~~~--~~~~~v~iPg~p~l~~~dlp-~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~ 227 (451)
T PLN03004 155 TIDETT--PGKNL--KDIPTVHIPGVPPMKGSDMP-KAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKA 227 (451)
T ss_pred hccccc--ccccc--ccCCeecCCCCCCCChHHCc-hhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHH
Confidence 422110 00000 11122357899888888888 4433221 12334444555566789999999999999976654
Q ss_pred C------CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012083 250 L------PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVR 323 (471)
Q Consensus 250 ~------~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 323 (471)
. ++++.|||+.............+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.++++|||+++
T Consensus 228 l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r 307 (451)
T PLN03004 228 ITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVR 307 (451)
T ss_pred HHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 3 4799999997532211011122456999999998889999999999999999999999999999999999998
Q ss_pred CCCCCC----CCC-CCCchhHHhhCCCc-EEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhh
Q 012083 324 PGFING----SST-NNPDGLVAKVADFG-KMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYI 397 (471)
Q Consensus 324 ~~~~~~----~~~-~lp~~~~~~~~~nv-~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 397 (471)
...... ... .+|++|.+++.++. .+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.|
T Consensus 308 ~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~n 387 (451)
T PLN03004 308 NPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387 (451)
T ss_pred CCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhh
Confidence 531100 112 38999999987655 556999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHH
Q 012083 398 KSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSK 460 (471)
Q Consensus 398 a~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 460 (471)
|+++++.+|+|+.++.++.+.+++++|.++|+++|.|++||+|++++++..++++++||||++
T Consensus 388 a~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 388 RVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999985479999997522236799999999999999999999999999999999999999975
No 15
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1e-62 Score=480.16 Aligned_cols=419 Identities=22% Similarity=0.384 Sum_probs=320.8
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC--CCCCC
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP--DGLEP 90 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~ 90 (471)
|+..++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. .. .+..-.+++.++| +++++
T Consensus 1 ~~~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~-----~~~~~~v~~~~~p~~~glp~ 73 (453)
T PLN02764 1 MGGLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NL-----FPHNIVFRSVTVPHVDGLPV 73 (453)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--cc-----CCCCceEEEEECCCcCCCCC
Confidence 455678999999999999999999999999999999999999876554431 00 0001137788887 66655
Q ss_pred C-CCcc----cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 91 E-DDRK----DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 91 ~-~~~~----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
+ +... .....+......+.+.++++++. .+||+||+|. ..|+..+|+++|||++.++++++..+..+
T Consensus 74 g~e~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~-------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~ 145 (453)
T PLN02764 74 GTETVSEIPVTSADLLMSAMDLTRDQVEVVVRA-------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASM 145 (453)
T ss_pred cccccccCChhHHHHHHHHHHHhHHHHHHHHHh-------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHH
Confidence 4 2111 11122333334556778888776 6789999995 77999999999999999999999887776
Q ss_pred hchhhhhhhCCCCCCcccccccccccCCCCCC----CCccccCCCCCC--CCCchhHHHHHHHHHHhhhccCcEEEEcch
Q 012083 166 MNIPKFIEAGIISSDGIVIKNEKIELSPYLPA----ASPAEFLWNCPG--NPSLQTLMFQYINVIRQNIEASDRILCTWF 239 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 239 (471)
.+ + .+..+ ..+|++|. ++..+++. +.. ..........++.+.......++.+++||+
T Consensus 146 ~~-~----~~~~~-----------~~~pglp~~~v~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf 208 (453)
T PLN02764 146 LV-P----GGELG-----------VPPPGYPSSKVLLRKQDAYT-MKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTA 208 (453)
T ss_pred hc-c----cccCC-----------CCCCCCCCCcccCcHhhCcc-hhhcCCCccchhHHHHHHHHHHhhccCCEEEEecc
Confidence 53 1 11110 12356652 45555552 211 111112233444444455678999999999
Q ss_pred hhhchhhhhhC-----CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC
Q 012083 240 HELAPSANKIL-----PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA 314 (471)
Q Consensus 240 ~~l~~~~~~~~-----~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 314 (471)
.+||....... ++++.|||+.+... .....+.+|.+|||.+++++||||||||+...+.+++.+++.+|+..
T Consensus 209 ~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~---~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s 285 (453)
T PLN02764 209 REIEGNFCDYIEKHCRKKVLLTGPVFPEPD---KTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELT 285 (453)
T ss_pred HHhhHHHHHHHHhhcCCcEEEeccCccCcc---ccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhC
Confidence 99998766654 46999999976432 11123568999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCCC-CCCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeeccccc
Q 012083 315 GQPFLCGVRPGFIN-GSSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGH 392 (471)
Q Consensus 315 ~~~~i~~~~~~~~~-~~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 392 (471)
+.+|+|+++..... .....+|++|.+++.+++.++ +|+||.+||+|++|++|||||||||++||+++|||||++|++.
T Consensus 286 ~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~ 365 (453)
T PLN02764 286 GSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLG 365 (453)
T ss_pred CCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 99999999853211 123469999999998888776 9999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 012083 393 DHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND-----VVRKNALKLKELAQKSVTKEGSSSKNLEYFIK 467 (471)
Q Consensus 393 DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~ 467 (471)
||+.||+++++.+|+|+.+..++.+.++.++|.++|+++|+++ ++|+|++++++.+++ ||||++++++||+
T Consensus 366 DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~ 441 (453)
T PLN02764 366 DQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIE 441 (453)
T ss_pred chHHHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 9999999997548999998542113589999999999999874 489999999998865 8999999999999
Q ss_pred HHh
Q 012083 468 QIT 470 (471)
Q Consensus 468 ~~~ 470 (471)
+++
T Consensus 442 ~~~ 444 (453)
T PLN02764 442 SLQ 444 (453)
T ss_pred HHH
Confidence 886
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.1e-63 Score=491.04 Aligned_cols=441 Identities=24% Similarity=0.402 Sum_probs=328.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCC---CeEEEEeCCcchh-hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCR---IKVTFVTTEFICE-RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE 91 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rG---h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (471)
++.||+++|++++||++|++.||+.|+.+| +.||++++..... ......... ....++++|+.+|+...+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-----~~~~~~i~~~~lp~~~~p~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-----IASEPRIRLVTLPEVQDPP 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-----ccCCCCeEEEECCCCCCCc
Confidence 567999999999999999999999999998 3567777543321 111110000 0122369999999754221
Q ss_pred C-C--cccHHHHHHHHHhhccHHHHHHHHHHhccc---CCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 92 D-D--RKDEAKMTRSISKVMPGYLEELIQKINQQE---EDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 92 ~-~--~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
+ . .......+..+...+.+.+++.++++.... ...+++|||+|.++.|+..+|+++|||++.++++++..+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~ 156 (475)
T PLN02167 77 PMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMM 156 (475)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHH
Confidence 1 1 112222333344566667777777653210 001459999999999999999999999999999999988888
Q ss_pred hchhhhhhhCCCCCCcccc-cccccccCCCC-CCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhc
Q 012083 166 MNIPKFIEAGIISSDGIVI-KNEKIELSPYL-PAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELA 243 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~-~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~ 243 (471)
++++..... ... ..+. ..+....+|++ +.++..+++ .+..... ..+.+.+..+...+++.+++||+.+||
T Consensus 157 ~~~~~~~~~--~~~-~~~~~~~~~~~~iPgl~~~l~~~dlp-~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE 228 (475)
T PLN02167 157 KYLPERHRK--TAS-EFDLSSGEEELPIPGFVNSVPTKVLP-PGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELE 228 (475)
T ss_pred HHHHHhccc--ccc-ccccCCCCCeeECCCCCCCCChhhCc-hhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHH
Confidence 776643211 100 0110 00111247888 457777776 3222111 122334445556889999999999999
Q ss_pred hhhhhhC-------CCcceeccccCCCCCCCCC--CcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC
Q 012083 244 PSANKIL-------PSIIPVGPLIANGQPTGNF--WSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA 314 (471)
Q Consensus 244 ~~~~~~~-------~~~~~vGp~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~ 314 (471)
+...... |++++|||++......... ...+.+|.+||+.+++++||||||||+...+.+++.+++.+|+.+
T Consensus 229 ~~~~~~l~~~~~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~ 308 (475)
T PLN02167 229 PNAFDYFSRLPENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELV 308 (475)
T ss_pred HHHHHHHHhhcccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhC
Confidence 9766542 6899999998643210011 122367999999998889999999999889999999999999999
Q ss_pred CCCEEEEEcCCCCC--CCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeeccccc
Q 012083 315 GQPFLCGVRPGFIN--GSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGH 392 (471)
Q Consensus 315 ~~~~i~~~~~~~~~--~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 392 (471)
+++|||+++..... .....+|++|.+++.+++++++|+||.+||+|++|++|||||||||++||+++|||||++|+++
T Consensus 309 ~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 388 (475)
T PLN02167 309 GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYA 388 (475)
T ss_pred CCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccc
Confidence 99999999753111 1123589999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHH-HHhhhcceeeecCC---C-CCCcCHhHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012083 393 DHLYIKSC-ICDDWKIGLWLEPD---D-NGIIGRHEIKRKVDELLSND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFI 466 (471)
Q Consensus 393 DQ~~na~~-v~~~~G~G~~~~~~---~-~~~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 466 (471)
||+.||++ +++ +|+|+.+..+ + ...+++++|.++|+++|.++ +||+||+++++++++++.+||||+.++++||
T Consensus 389 DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v 467 (475)
T PLN02167 389 EQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFI 467 (475)
T ss_pred cchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999987 556 8999998641 0 13579999999999999765 8999999999999999999999999999999
Q ss_pred HHHh
Q 012083 467 KQIT 470 (471)
Q Consensus 467 ~~~~ 470 (471)
++++
T Consensus 468 ~~i~ 471 (475)
T PLN02167 468 DDLL 471 (475)
T ss_pred HHHH
Confidence 9986
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.3e-62 Score=479.04 Aligned_cols=434 Identities=23% Similarity=0.372 Sum_probs=331.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhH-HhhhcCCCCccCCCCCCeEEEeCCCCCCCC-C
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIK-ESRQLGSFSEMGDAQQLVRIVPLPDGLEPE-D 92 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~ 92 (471)
.+.||+++|++++||++|++.||+.|+.+ |..|||++++....... +..... . ....+++++.+|...... .
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~----~-~~~~~i~~~~lp~~~~~~l~ 76 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHA----A-AARTTCQITEIPSVDVDNLV 76 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccc----c-cCCCceEEEECCCCccccCC
Confidence 34699999999999999999999999987 99999998887554331 110000 0 011259999998543211 0
Q ss_pred C-cccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCc-eEEEeCchHHHHHHHhchhh
Q 012083 93 D-RKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELK-KASIYTSAPGILAMIMNIPK 170 (471)
Q Consensus 93 ~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~p~ 170 (471)
. ..+....+......+.+.++++++++. .+|+|||+|.++.|+..+|+++||| .+.+++++++....++++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 77 EPDATIFTKMVVKMRAMKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred CCCccHHHHHHHHHHhchHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 1 113333344445578888999988753 3689999999999999999999999 58888888877777777665
Q ss_pred hhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC
Q 012083 171 FIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL 250 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 250 (471)
... .... ......+. ..+|+++.++..+++ ..+.... ...+. .+.+..+...+++.+++||+.+||+......
T Consensus 152 ~~~--~~~~-~~~~~~~~-~~vPg~p~l~~~dlp-~~~~~~~-~~~~~-~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l 224 (470)
T PLN03015 152 LDT--VVEG-EYVDIKEP-LKIPGCKPVGPKELM-ETMLDRS-DQQYK-ECVRSGLEVPMSDGVLVNTWEELQGNTLAAL 224 (470)
T ss_pred hhc--cccc-ccCCCCCe-eeCCCCCCCChHHCC-HhhcCCC-cHHHH-HHHHHHHhcccCCEEEEechHHHhHHHHHHH
Confidence 321 1111 00010122 258999989999988 3332221 11222 2334445578899999999999998666443
Q ss_pred -----------CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEE
Q 012083 251 -----------PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFL 319 (471)
Q Consensus 251 -----------~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 319 (471)
++++.|||+..... ....+.+|.+||+.+++++||||||||+..++.+++.+++.+|+.++++||
T Consensus 225 ~~~~~~~~~~~~~v~~VGPl~~~~~----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 225 REDMELNRVMKVPVYPIGPIVRTNV----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred HhhcccccccCCceEEecCCCCCcc----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 46999999985321 112345799999999888999999999999999999999999999999999
Q ss_pred EEEcCCCC--------CC-CCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecc
Q 012083 320 CGVRPGFI--------NG-SSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWP 389 (471)
Q Consensus 320 ~~~~~~~~--------~~-~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 389 (471)
|+++.... .+ ....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 99974211 01 12358999999999888765 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHhhhcceeeecC-CCCCCcCHhHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 012083 390 WGHDHLYIKSCICDDWKIGLWLEP-DDNGIIGRHEIKRKVDELLS-----NDVVRKNALKLKELAQKSVTKEGSSSKNLE 463 (471)
Q Consensus 390 ~~~DQ~~na~~v~~~~G~G~~~~~-~~~~~~~~~~l~~~i~~ll~-----~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 463 (471)
++.||+.||+++++.+|+|+.+.. +..+.+++++|.++|+++|. ..++|+||++++++.++++.+||||++++.
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~ 460 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLF 460 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999655999999952 11246899999999999994 248999999999999999999999999999
Q ss_pred HHHHHHh
Q 012083 464 YFIKQIT 470 (471)
Q Consensus 464 ~~~~~~~ 470 (471)
+|++++.
T Consensus 461 ~~~~~~~ 467 (470)
T PLN03015 461 EWAKRCY 467 (470)
T ss_pred HHHHhcc
Confidence 9998763
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-62 Score=482.27 Aligned_cols=411 Identities=21% Similarity=0.391 Sum_probs=310.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeC--C--CCCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPL--P--DGLEPED 92 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~--~~~~~~~ 92 (471)
+.||+++|++++||++|++.||+.|+.+||+|||++++.+...+.+.+ ....++++..+ + ++++...
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~---------a~~~~i~~~~l~~p~~dgLp~g~ 74 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN---------LFPDSIVFHPLTIPPVNGLPAGA 74 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc---------CCCCceEEEEeCCCCccCCCCCc
Confidence 589999999999999999999999999999999999998877665432 11224566554 3 4555442
Q ss_pred C-cccHH----HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhc
Q 012083 93 D-RKDEA----KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMN 167 (471)
Q Consensus 93 ~-~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 167 (471)
. ..++. .++......+.+.++++++. .++|+||+| ++.|+..+|+++|||++.++++++.... +.+
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~-------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~ 145 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLTRDQVEAAVRA-------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTH 145 (442)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhh-------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHc
Confidence 1 22222 22222233445556666654 688999999 5779999999999999999999888654 444
Q ss_pred hhhhhhhCCCCCCcccccccccccCCCCCC----CCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhc
Q 012083 168 IPKFIEAGIISSDGIVIKNEKIELSPYLPA----ASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELA 243 (471)
Q Consensus 168 ~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~ 243 (471)
++. +... ..+|++|. ++..+++ .+ . .....+.....+..+...+++.+++||+.+||
T Consensus 146 ~~~----~~~~-----------~~~pglp~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE 206 (442)
T PLN02208 146 VPG----GKLG-----------VPPPGYPSSKVLFRENDAH-AL-A--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIE 206 (442)
T ss_pred cCc----cccC-----------CCCCCCCCcccccCHHHcC-cc-c--ccchHHHHHHHHHHhhhccCCEEEEECHHHHH
Confidence 331 1000 02356653 3455555 22 1 11122222222333456789999999999999
Q ss_pred hhhhhh-----CCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCE
Q 012083 244 PSANKI-----LPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPF 318 (471)
Q Consensus 244 ~~~~~~-----~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 318 (471)
+..... .+++++|||+..... ...+.+.+|.+||+.+++++||||||||+..++.+++.+++.+++..+.++
T Consensus 207 ~~~~~~~~~~~~~~v~~vGpl~~~~~---~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf 283 (442)
T PLN02208 207 GKFCDYISRQYHKKVLLTGPMFPEPD---TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF 283 (442)
T ss_pred HHHHHHHHhhcCCCEEEEeecccCcC---CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 876654 368999999986542 112346789999999988899999999999999999999999998899999
Q ss_pred EEEEcCCCCC-CCCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhh
Q 012083 319 LCGVRPGFIN-GSSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLY 396 (471)
Q Consensus 319 i~~~~~~~~~-~~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 396 (471)
+|+++..... .....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 284 ~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 284 LIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred EEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 9999743111 122468999999986655554 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 012083 397 IKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND-----VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471 (471)
Q Consensus 397 na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 471 (471)
||+++++.+|+|+.++.++.+.+++++|.++|+++|+++ ++|+|++++++.+.+ +|||+.++.+||+++++
T Consensus 364 na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 999877658999999752213489999999999999764 499999999999743 78999999999999864
No 19
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-62 Score=481.63 Aligned_cols=429 Identities=24% Similarity=0.365 Sum_probs=325.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC----CCCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP----DGLEPED 92 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~ 92 (471)
+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+.+... ...++++++.+| ++++++.
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~--------~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPS--------QLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccc--------cCCCCeeEEECCCCccCCCCCCc
Confidence 5799999999999999999999999999999999999987765543210 112369999988 5666542
Q ss_pred C-cccH----HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhc
Q 012083 93 D-RKDE----AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMN 167 (471)
Q Consensus 93 ~-~~~~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 167 (471)
. ..+. ..++....+.+.+.+++++++ .+++|||+|.+..|+..+|+++|||++.++++++..+..+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~ 150 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLET-------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGP 150 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHh-------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhh
Confidence 1 2222 234445555677777888766 678999999999999999999999999999999988877664
Q ss_pred hhhhhhhCCCCCCcccccccccccCCCC----C--CCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhh
Q 012083 168 IPKFIEAGIISSDGIVIKNEKIELSPYL----P--AASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHE 241 (471)
Q Consensus 168 ~p~~~~~~~~~~~~~~~~~~~~~~~p~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 241 (471)
.+.....+..+. ..+....+|++ + .++..+++ .+.............+.+......+++.+++||+.+
T Consensus 151 ~~~~~~~~~~~~-----~~~~~~~~p~~~P~~~~~~~~~~dlp-~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~e 224 (472)
T PLN02670 151 PSSLMEGGDLRS-----TAEDFTVVPPWVPFESNIVFRYHEVT-KYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPE 224 (472)
T ss_pred hHhhhhcccCCC-----ccccccCCCCcCCCCccccccHHHhh-HHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHH
Confidence 433222222111 11111113332 1 23445666 333211111111222334444567899999999999
Q ss_pred hchhhhhhC-----CCcceeccccCCCCCCCC-C-C--cCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHH
Q 012083 242 LAPSANKIL-----PSIIPVGPLIANGQPTGN-F-W--SEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLE 312 (471)
Q Consensus 242 l~~~~~~~~-----~~~~~vGp~~~~~~~~~~-~-~--~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~ 312 (471)
||....... ++++.|||+.+....... . . +.+.+|.+||+.+++++||||||||+...+.+++.+++.+|+
T Consensus 225 LE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~ 304 (472)
T PLN02670 225 FEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLE 304 (472)
T ss_pred HhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 999777653 579999999753110001 0 0 123679999999988899999999999999999999999999
Q ss_pred hCCCCEEEEEcCCCCC--CCCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecc
Q 012083 313 LAGQPFLCGVRPGFIN--GSSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWP 389 (471)
Q Consensus 313 ~~~~~~i~~~~~~~~~--~~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 389 (471)
.++++|||+++..... +....+|++|.+++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 305 ~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 305 KSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred HCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 9999999999853111 112368999999998888775 9999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHhhhcceeeecCCC-CCCcCHhHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 012083 390 WGHDHLYIKSCICDDWKIGLWLEPDD-NGIIGRHEIKRKVDELLSND---VVRKNALKLKELAQKSVTKEGSSSKNLEYF 465 (471)
Q Consensus 390 ~~~DQ~~na~~v~~~~G~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~---~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 465 (471)
++.||+.||+++++ +|+|+.+...+ .+.++.++|.++|+++|.|+ +||+||+++++++++ .+...+.++.|
T Consensus 385 ~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~ 459 (472)
T PLN02670 385 VLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDEL 459 (472)
T ss_pred chhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHH
Confidence 99999999999998 79999996421 23589999999999999876 799999999999997 57888899999
Q ss_pred HHHHhC
Q 012083 466 IKQITE 471 (471)
Q Consensus 466 ~~~~~~ 471 (471)
++.+++
T Consensus 460 ~~~l~~ 465 (472)
T PLN02670 460 VHYLRE 465 (472)
T ss_pred HHHHHH
Confidence 988763
No 20
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-61 Score=477.93 Aligned_cols=434 Identities=26% Similarity=0.443 Sum_probs=321.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC-----CCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP-----DGLEPE 91 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~ 91 (471)
+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+........ .....++|+.+| +++++.
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~-----~~~~~i~~~~lp~p~~~dglp~~ 82 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRAR-----ESGLPIRLVQIPFPCKEVGLPIG 82 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhcc-----ccCCCeEEEEcCCCCccCCCCCC
Confidence 4799999999999999999999999999999999999988765554321100 111148999988 577654
Q ss_pred -CCcc-----cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 92 -DDRK-----DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 92 -~~~~-----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
+... .+...+......+.+.++++++.. . .+|++||+|.++.|+..+|+++|||.+.+++++++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~ 157 (491)
T PLN02534 83 CENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSS 157 (491)
T ss_pred ccccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHH
Confidence 2111 122222223334566777777642 1 4789999999999999999999999999999988877665
Q ss_pred hchhhhhhhCCCCCCcccccccccccCCCCCC---CCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhh
Q 012083 166 MNIPKFIEAGIISSDGIVIKNEKIELSPYLPA---ASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHEL 242 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l 242 (471)
+++.. +. .... .+. ......+|+++. ++..+++ .+...... ...+..........++.+++||+.+|
T Consensus 158 ~~~~~-~~-~~~~---~~~-~~~~~~iPg~p~~~~l~~~dlp-~~~~~~~~---~~~~~~~~~~~~~~a~~vlvNTf~eL 227 (491)
T PLN02534 158 HNIRL-HN-AHLS---VSS-DSEPFVVPGMPQSIEITRAQLP-GAFVSLPD---LDDVRNKMREAESTAFGVVVNSFNEL 227 (491)
T ss_pred HHHHH-hc-cccc---CCC-CCceeecCCCCccccccHHHCC-hhhcCccc---HHHHHHHHHhhcccCCEEEEecHHHh
Confidence 43211 11 0110 111 111224677763 6666766 32221111 12222222222345779999999999
Q ss_pred chhhhhhC-----CCcceeccccCCCCCC------CCCCc-CcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHH
Q 012083 243 APSANKIL-----PSIIPVGPLIANGQPT------GNFWS-EDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALG 310 (471)
Q Consensus 243 ~~~~~~~~-----~~~~~vGp~~~~~~~~------~~~~~-~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~a 310 (471)
|+...... ++++.|||+....... ..... .+.+|.+||+.+++++||||||||+.....+++.+++.+
T Consensus 228 E~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~g 307 (491)
T PLN02534 228 EHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLG 307 (491)
T ss_pred hHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 98766542 5799999997532100 00111 235699999999988999999999999999999999999
Q ss_pred HHhCCCCEEEEEcCCCCC-C-CCCCCCchhHHhhC-CCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceee
Q 012083 311 LELAGQPFLCGVRPGFIN-G-SSTNNPDGLVAKVA-DFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLC 387 (471)
Q Consensus 311 l~~~~~~~i~~~~~~~~~-~-~~~~lp~~~~~~~~-~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~ 387 (471)
|+.++++|||+++..... + ....+|++|.+++. .++++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 308 l~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~ 387 (491)
T PLN02534 308 LEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMIT 387 (491)
T ss_pred HHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEe
Confidence 999999999999843111 1 11246899998864 55555699999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHhhhcceeeecCC-------C-C-C-CcCHhHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHHh
Q 012083 388 WPWGHDHLYIKSCICDDWKIGLWLEPD-------D-N-G-IIGRHEIKRKVDELLS-----NDVVRKNALKLKELAQKSV 452 (471)
Q Consensus 388 ~P~~~DQ~~na~~v~~~~G~G~~~~~~-------~-~-~-~~~~~~l~~~i~~ll~-----~~~~~~~a~~l~~~~~~~~ 452 (471)
+|++.||+.||+++++.||+|+.+..+ + . + .+++++|.++|+++|. ..++|+||++|+++.++++
T Consensus 388 ~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av 467 (491)
T PLN02534 388 WPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAM 467 (491)
T ss_pred ccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998779999988521 0 0 1 4899999999999996 2489999999999999999
Q ss_pred hcCCChHHHHHHHHHHHh
Q 012083 453 TKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 453 ~~gg~~~~~~~~~~~~~~ 470 (471)
.+||||++++++||++++
T Consensus 468 ~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 468 ELGGSSHINLSILIQDVL 485 (491)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 999999999999999886
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-61 Score=471.95 Aligned_cols=411 Identities=22% Similarity=0.380 Sum_probs=307.3
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC----CCCCCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP----DGLEPE 91 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~ 91 (471)
++.||+++|++++||++|++.||+.|+.+|++|||++++.+...+.+.. ...++++|..++ +++++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~---------~~~~~i~~~~i~lP~~dGLP~g 73 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN---------LFPDSIVFEPLTLPPVDGLPFG 73 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc---------cCCCceEEEEecCCCcCCCCCc
Confidence 3579999999999999999999999999999999999998876665431 111258885543 566554
Q ss_pred C-CcccHHH----HHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHh
Q 012083 92 D-DRKDEAK----MTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIM 166 (471)
Q Consensus 92 ~-~~~~~~~----~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 166 (471)
. ...++.. .+......+.+.++++++. .+||+||+|. +.|+..+|+++|||++.++++++.....+.
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~-------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~ 145 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRA-------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVL 145 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhc-------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHh
Confidence 2 2212211 1222222344444444443 6889999995 789999999999999999999998887766
Q ss_pred chhhhhhhCCCCCCcccccccccccCCCCCC----CCccccCC-CCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhh
Q 012083 167 NIPKFIEAGIISSDGIVIKNEKIELSPYLPA----ASPAEFLW-NCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHE 241 (471)
Q Consensus 167 ~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 241 (471)
+ +. ... + ..+|++|. ++..+... .++.. ....+.+..+...+++.+++||+.+
T Consensus 146 ~-~~--~~~-----~--------~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~e 203 (446)
T PLN00414 146 A-PR--AEL-----G--------FPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVE 203 (446)
T ss_pred C-cH--hhc-----C--------CCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHH
Confidence 5 21 100 0 01244432 22121110 11110 1123334445567899999999999
Q ss_pred hchhhhhhC-----CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCC
Q 012083 242 LAPSANKIL-----PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQ 316 (471)
Q Consensus 242 l~~~~~~~~-----~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~ 316 (471)
||+...... ++++.|||+.+..... .....+.+|.+|||.+++++||||||||+...+.+++.+++.+|+..+.
T Consensus 204 LE~~~~~~~~~~~~~~v~~VGPl~~~~~~~-~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~ 282 (446)
T PLN00414 204 LEGNLCDFIERQCQRKVLLTGPMLPEPQNK-SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGL 282 (446)
T ss_pred HHHHHHHHHHHhcCCCeEEEcccCCCcccc-cCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 999776643 4689999997543210 1112345689999999999999999999999999999999999999999
Q ss_pred CEEEEEcCCCCC-CCCCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccch
Q 012083 317 PFLCGVRPGFIN-GSSTNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDH 394 (471)
Q Consensus 317 ~~i~~~~~~~~~-~~~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ 394 (471)
+|+|++...... .....+|++|.+++.++.+++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||
T Consensus 283 ~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ 362 (446)
T PLN00414 283 PFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQ 362 (446)
T ss_pred CeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccch
Confidence 999999864221 123469999999999999887 999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012083 395 LYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND-----VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQI 469 (471)
Q Consensus 395 ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 469 (471)
+.||+++++.+|+|+.+..++.+.+++++|.++++++|.|+ ++|++++++++.+.+ +||+| ..+++||+++
T Consensus 363 ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~ 438 (446)
T PLN00414 363 VLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEAL 438 (446)
T ss_pred HHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHH
Confidence 99999997448999999642113589999999999999764 499999999999744 47734 3389999987
Q ss_pred h
Q 012083 470 T 470 (471)
Q Consensus 470 ~ 470 (471)
+
T Consensus 439 ~ 439 (446)
T PLN00414 439 E 439 (446)
T ss_pred H
Confidence 5
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.1e-52 Score=417.14 Aligned_cols=402 Identities=15% Similarity=0.144 Sum_probs=275.2
Q ss_pred cEEEEE-cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC----C
Q 012083 18 VHVLLV-SFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE----D 92 (471)
Q Consensus 18 ~~Il~~-~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~ 92 (471)
.||+.+ |.++.||+..+.+|+++|++|||+||++++..... ... ....+++.+.++...+.. .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~-----------~~~~~~~~i~~~~~~~~~~~~~~ 88 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YAS-----------HLCGNITEIDASLSVEYFKKLVK 88 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-ccc-----------CCCCCEEEEEcCCChHHHHHHHh
Confidence 578755 88999999999999999999999999997753211 100 011266666654211110 0
Q ss_pred Cc------c---cHHHH----HHHHHhhc-----cHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHc-CCceEE
Q 012083 93 DR------K---DEAKM----TRSISKVM-----PGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKL-ELKKAS 153 (471)
Q Consensus 93 ~~------~---~~~~~----~~~~~~~~-----~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~l-giP~v~ 153 (471)
.. . +...+ ...+...+ .+.+.+++ +... .++|+||+|.+..|+..+|+++ ++|+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L---~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~ 163 (507)
T PHA03392 89 SSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLI---ANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQ 163 (507)
T ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---hcCC--CceeEEEecccchhHHHHHHHhCCCCEEE
Confidence 00 0 00011 11111122 22223333 2111 7899999999888999999999 999998
Q ss_pred EeCchHHHHHHHhchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCC-----------CCCCchhHHHHHHH
Q 012083 154 IYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCP-----------GNPSLQTLMFQYIN 222 (471)
Q Consensus 154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 222 (471)
++++..................++|.+..... ..+.+.+...+++ .....++...+++.
T Consensus 164 ~ss~~~~~~~~~~~gg~p~~~syvP~~~~~~~----------~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~ 233 (507)
T PHA03392 164 ISSGYGLAENFETMGAVSRHPVYYPNLWRSKF----------GNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFG 233 (507)
T ss_pred EcCCCCchhHHHhhccCCCCCeeeCCcccCCC----------CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcC
Confidence 88865543221110001111112221110000 0111111000100 00122223333332
Q ss_pred H----HHhhhccCcEEEEcchhhhchhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccc-
Q 012083 223 V----IRQNIEASDRILCTWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSIS- 297 (471)
Q Consensus 223 ~----~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~- 297 (471)
. +.+...+.+++++|+++.++++ ++++|++++|||+..+.. ...+.+.++.+|++.++ +++|||||||+.
T Consensus 234 ~~~~~~~~l~~~~~l~lvns~~~~d~~-rp~~p~v~~vGgi~~~~~---~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~ 308 (507)
T PHA03392 234 PDTPTIRELRNRVQLLFVNVHPVFDNN-RPVPPSVQYLGGLHLHKK---PPQPLDDYLEEFLNNST-NGVVYVSFGSSID 308 (507)
T ss_pred CCCCCHHHHHhCCcEEEEecCccccCC-CCCCCCeeeecccccCCC---CCCCCCHHHHHHHhcCC-CcEEEEECCCCCc
Confidence 1 2233467789999999999998 899999999999987542 22356778889999865 469999999984
Q ss_pred --cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchh
Q 012083 298 --KLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNST 375 (471)
Q Consensus 298 --~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~ 375 (471)
..+.+.++.+++|+++.+.+|||+.++. ..+ ...|+|+++++|+||.+||+||+|++||||||+||+
T Consensus 309 ~~~~~~~~~~~~l~a~~~l~~~viw~~~~~-------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~ 377 (507)
T PHA03392 309 TNDMDNEFLQMLLRTFKKLPYNVLWKYDGE-------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQST 377 (507)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCC-------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccH
Confidence 3578889999999999999999999754 111 124789999999999999999999999999999999
Q ss_pred hHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcC
Q 012083 376 MEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKE 455 (471)
Q Consensus 376 ~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~g 455 (471)
+||+++|||||++|++.||+.||+|+++ +|+|+.+++ ..++.++|.++|+++|+|++||+||+++++.+++. .
T Consensus 378 ~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~---p 450 (507)
T PHA03392 378 DEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQ---P 450 (507)
T ss_pred HHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhC---C
Confidence 9999999999999999999999999999 799999986 77899999999999999999999999999999984 3
Q ss_pred CChHHHHHHHHHHH
Q 012083 456 GSSSKNLEYFIKQI 469 (471)
Q Consensus 456 g~~~~~~~~~~~~~ 469 (471)
-+..+.+..-++.+
T Consensus 451 ~~~~~~av~~iE~v 464 (507)
T PHA03392 451 MTPLHKAIWYTEHV 464 (507)
T ss_pred CCHHHHHHHHHHHH
Confidence 33444444444443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.5e-51 Score=419.63 Aligned_cols=378 Identities=24% Similarity=0.306 Sum_probs=228.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc---c
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR---K 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~ 95 (471)
||+++|. ++||+.++..|+++|++|||+||++++.... .+.. .....+++..++......+.. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP-----------SKPSNIRFETYPDPYPEEEFEEIFP 68 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-----------------S-CCEEEE-----TT------T
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc-----------ccccceeeEEEcCCcchHHHhhhhH
Confidence 7888885 7899999999999999999999999875432 2221 112266776666554433111 1
Q ss_pred cH--------------HHHHHH---HHhhccHHHH------HHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceE
Q 012083 96 DE--------------AKMTRS---ISKVMPGYLE------ELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKA 152 (471)
Q Consensus 96 ~~--------------~~~~~~---~~~~~~~~~~------~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v 152 (471)
.. ...+.. +.......++ ++++.++. .++|++|+|.+..|+..+|+.+++|.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la~~l~iP~i 144 (500)
T PF00201_consen 69 EFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALAHYLGIPVI 144 (500)
T ss_dssp THHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHHHHHHHTHH
T ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHHHHhcCCeE
Confidence 10 111111 1111111221 22222333 689999999998899999999999998
Q ss_pred EEeCchHHHHHHHhchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCc-hhHHHHHHHH--------
Q 012083 153 SIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSL-QTLMFQYINV-------- 223 (471)
Q Consensus 153 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------- 223 (471)
.+.++.+....... . .+.|. ...++|....-....+. .+.+..+. ......+..+
T Consensus 145 ~~~s~~~~~~~~~~-------~-----~g~p~---~psyvP~~~s~~~~~ms-f~~Ri~N~l~~~~~~~~~~~~~~~~~~ 208 (500)
T PF00201_consen 145 IISSSTPMYDLSSF-------S-----GGVPS---PPSYVPSMFSDFSDRMS-FWQRIKNFLFYLYFRFIFRYFFSPQDK 208 (500)
T ss_dssp HHHHCCSCSCCTCC-------T-----SCCCT---STTSTTCBCCCSGTTSS-SST--TTSHHHHHHHHHHHHGGGS-TT
T ss_pred EEecccccchhhhh-------c-----cCCCC---ChHHhccccccCCCccc-hhhhhhhhhhhhhhccccccchhhHHH
Confidence 76443322100000 0 00110 00111211100000000 01000110 1111111111
Q ss_pred -----------HHhhhccCcEEEEcchhhhchhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEe
Q 012083 224 -----------IRQNIEASDRILCTWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAA 292 (471)
Q Consensus 224 -----------~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs 292 (471)
..+.+...+.+++|+++.++++ ++.+|++.+||++..+++ .+.+.++..|++...++++||||
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~p-rp~~p~v~~vGgl~~~~~-----~~l~~~~~~~~~~~~~~~vv~vs 282 (500)
T PF00201_consen 209 LYKKYFGFPFSFRELLSNASLVLINSHPSLDFP-RPLLPNVVEVGGLHIKPA-----KPLPEELWNFLDSSGKKGVVYVS 282 (500)
T ss_dssp S-EEESS-GGGCHHHHHHHHHCCSSTEEE-----HHHHCTSTTGCGC-S---------TCHHHHHHHTSTTTTTEEEEEE
T ss_pred HHhhhcccccccHHHHHHHHHHhhhccccCcCC-cchhhcccccCccccccc-----cccccccchhhhccCCCCEEEEe
Confidence 1122345677899999999988 899999999999987654 24567788999985567899999
Q ss_pred cCccccCCHH-HHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccC
Q 012083 293 FGSISKLSQQ-QFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCG 371 (471)
Q Consensus 293 ~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG 371 (471)
|||+....++ .++.++++|++++++|||++.+. +.. ..++|+++++|+||.+||+||++++||||||
T Consensus 283 fGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~---------~~~---~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG 350 (500)
T PF00201_consen 283 FGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE---------PPE---NLPKNVLIVKWLPQNDLLAHPRVKLFITHGG 350 (500)
T ss_dssp -TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS---------HGC---HHHTTEEEESS--HHHHHTSTTEEEEEES--
T ss_pred cCcccchhHHHHHHHHHHHHhhCCCccccccccc---------ccc---cccceEEEeccccchhhhhcccceeeeeccc
Confidence 9998654444 47889999999999999999753 122 2478999999999999999999999999999
Q ss_pred cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 012083 372 WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKS 451 (471)
Q Consensus 372 ~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 451 (471)
+||+.||+++|||||++|+++||+.||+++++ .|+|+.++. ..+|.++|.++|+++|+|++|++||+++++.+++.
T Consensus 351 ~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 351 LNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLENPSYKENAKRLSSLFRDR 426 (500)
T ss_dssp HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT--
T ss_pred cchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 699999996 78999999999999999999999999999999874
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.9e-44 Score=356.15 Aligned_cols=374 Identities=18% Similarity=0.253 Sum_probs=264.2
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc-----ccH
Q 012083 23 VSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR-----KDE 97 (471)
Q Consensus 23 ~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~ 97 (471)
+.+|+.||++|+++||++|+++||+|+|++++.+.+.+++. |+.|.+++......... .+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~--------------G~~~~~~~~~~~~~~~~~~~~~~~~ 66 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA--------------GAEFVLYGSALPPPDNPPENTEEEP 66 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc--------------CCEEEecCCcCccccccccccCcch
Confidence 35799999999999999999999999999999999999887 88998888654432111 233
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCC
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGII 177 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 177 (471)
...++.+.......+..+.+.+.. .+||+||+|.++.++..+|+.+|||+|.+++...... ..+...
T Consensus 67 ~~~~~~~~~~~~~~~~~l~~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~~----- 133 (392)
T TIGR01426 67 IDIIEKLLDEAEDVLPQLEEAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEMV----- 133 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----cccccc-----
Confidence 344444444444444444444444 8999999999888999999999999999865432210 000000
Q ss_pred CCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHh----------h--hccCcEEEEcchhhhchh
Q 012083 178 SSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQ----------N--IEASDRILCTWFHELAPS 245 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~l~~s~~~l~~~ 245 (471)
+ + ..+.+. ...... . .. .+.+.+.+.+... . ....+..++.+.+.|+++
T Consensus 134 ~----~-------~~~~~~--~~~~~~-~----~~-~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~ 194 (392)
T TIGR01426 134 S----P-------AGEGSA--EEGAIA-E----RG-LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA 194 (392)
T ss_pred c----c-------cchhhh--hhhccc-c----ch-hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC
Confidence 0 0 000000 000000 0 00 0111111111111 1 123334677778888876
Q ss_pred hhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCC
Q 012083 246 ANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPG 325 (471)
Q Consensus 246 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 325 (471)
...++++++++||+..+... ...|....+++++||||+||+.......+..+++++.+.+.+++|.++..
T Consensus 195 ~~~~~~~~~~~Gp~~~~~~~----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~ 264 (392)
T TIGR01426 195 GETFDDSFTFVGPCIGDRKE----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG 264 (392)
T ss_pred ccccCCCeEEECCCCCCccc----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 55678899999998754321 11366655667899999999866677788889999999999999988654
Q ss_pred CCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhh
Q 012083 326 FINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDW 405 (471)
Q Consensus 326 ~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 405 (471)
.. ... ....++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..||.++++ +
T Consensus 265 ~~-------~~~-~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~ 333 (392)
T TIGR01426 265 VD-------PAD-LGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-L 333 (392)
T ss_pred CC-------hhH-hccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-C
Confidence 10 111 1224688999999999999977766 99999999999999999999999999999999999999 7
Q ss_pred cceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 406 KIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 406 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
|+|..+.. ..++.++|.++|+++|+|++|+++++++++++++. ++...+.+.+.+.+.
T Consensus 334 g~g~~l~~---~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 334 GLGRHLPP---EEVTAEKLREAVLAVLSDPRYAERLRKMRAEIREA----GGARRAADEIEGFLA 391 (392)
T ss_pred CCEEEecc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHhhc
Confidence 99999874 67899999999999999999999999999999874 344444444444433
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=7e-45 Score=360.93 Aligned_cols=378 Identities=16% Similarity=0.142 Sum_probs=257.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-----
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED----- 92 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----- 92 (471)
|||+|++.|+.||++|+++||++|++|||+|+|++++.+...+++. |+.|.++++......
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~--------------G~~~~~~~~~~~~~~~~~~~ 66 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA--------------GLEFVPVGGDPDELLASPER 66 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc--------------CCceeeCCCCHHHHHhhhhh
Confidence 5999999999999999999999999999999999999999888876 899998876432210
Q ss_pred -------CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 93 -------DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 93 -------~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
...........+.......++++++.++. ++||+||+|.+..++..+|+++|||++.+++++.......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 142 (401)
T cd03784 67 NAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF 142 (401)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC
Confidence 01112222333444444555555555444 8999999999888999999999999999988664421110
Q ss_pred hchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhc---------cCcEEEE
Q 012083 166 MNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIE---------ASDRILC 236 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~ 236 (471)
.+ ..... . ...+.................+....+. ..+..+.
T Consensus 143 ~~--------------------------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~ 194 (401)
T cd03784 143 PP--------------------------PLGRA-N-LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELY 194 (401)
T ss_pred CC--------------------------ccchH-H-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEE
Confidence 00 00000 0 0000000000000001111111111111 1223344
Q ss_pred cchhhhchhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCC-HHHHHHHHHHHHhCC
Q 012083 237 TWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLS-QQQFNELALGLELAG 315 (471)
Q Consensus 237 ~s~~~l~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~-~~~~~~~~~al~~~~ 315 (471)
...+.+..+..+++++..++|......+ .....+.++..|++.. +++|||++||+.... ...+..+++++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~ 269 (401)
T cd03784 195 GFSPAVLPPPPDWPRFDLVTGYGFRDVP---YNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLG 269 (401)
T ss_pred ecCcccCCCCCCccccCcEeCCCCCCCC---CCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcC
Confidence 4444444343566677778763333222 1223456666787663 569999999987644 456777999999999
Q ss_pred CCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchh
Q 012083 316 QPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHL 395 (471)
Q Consensus 316 ~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 395 (471)
.++||+++... ... ...++|+++.+|+||.++|.|+++ ||||||+||++|++++|||+|++|+..||+
T Consensus 270 ~~~i~~~g~~~-------~~~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 270 QRAILSLGWGG-------LGA---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred CeEEEEccCcc-------ccc---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 99999997651 001 234789999999999999977555 999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012083 396 YIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQ 468 (471)
Q Consensus 396 ~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 468 (471)
.||+++++ +|+|+.+.. ..++.++|.++++++|++ .++++++++++.+++. .+...+.++|++
T Consensus 338 ~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~~-~~~~~~~~~~~~~~~~-----~g~~~~~~~ie~ 400 (401)
T cd03784 338 FWAARVAE-LGAGPALDP---RELTAERLAAALRRLLDP-PSRRRAAALLRRIREE-----DGVPSAADVIER 400 (401)
T ss_pred HHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHhc-----cCHHHHHHHHhh
Confidence 99999999 799999975 558999999999999986 4667777787777653 344555555543
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=338.22 Aligned_cols=381 Identities=17% Similarity=0.212 Sum_probs=248.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|||+|+..|+.||++|+++||++|.++||+|+|+|++.+++.+++. |+.|..++............
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a--------------g~~f~~~~~~~~~~~~~~~~ 67 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA--------------GLAFVAYPIRDSELATEDGK 67 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh--------------CcceeeccccCChhhhhhhh
Confidence 8999999999999999999999999999999999999999999998 77777766542212111111
Q ss_pred HHHHHH---HHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHh-chhhhhh
Q 012083 98 AKMTRS---ISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIM-NIPKFIE 173 (471)
Q Consensus 98 ~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~-~~p~~~~ 173 (471)
....+. ..........++++-+.+ ..||+++.|...+.+ .+++..++|++.......+...... +.+....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~e----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (406)
T COG1819 68 FAGVKSFRRLLQQFKKLIRELLELLRE----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGI 142 (406)
T ss_pred hhccchhHHHhhhhhhhhHHHHHHHHh----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccc
Confidence 111121 222222333444444444 899999988776544 8999999999886554433211111 1000000
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHH-----------Hhhhcc-CcEEEEcchhh
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVI-----------RQNIEA-SDRILCTWFHE 241 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~l~~s~~~ 241 (471)
.+.. ..+..+ +..... .+....... ......+. ...... ....+......
T Consensus 143 ~~~~-------------~~~~~~-~~~~~~--~~~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (406)
T COG1819 143 AGKL-------------PIPLYP-LPPRLV--RPLIFARSW--LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVL 204 (406)
T ss_pred cccc-------------cccccc-cChhhc--cccccchhh--hhhhhhhhhccccccccchHHHhcCCCCccccccccc
Confidence 0000 000000 000000 000000000 00000000 011111 11111111111
Q ss_pred hchhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEE
Q 012083 242 LAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCG 321 (471)
Q Consensus 242 l~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 321 (471)
+.+. ...+....++||+...... ++..| ...++++||+|+||.... .+.+..+++++..++.++|+.
T Consensus 205 ~~~~-~~~p~~~~~~~~~~~~~~~---------~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~ 271 (406)
T COG1819 205 FPPG-DRLPFIGPYIGPLLGEAAN---------ELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVS 271 (406)
T ss_pred cCCC-CCCCCCcCccccccccccc---------cCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEe
Confidence 1110 2234455667766655431 11123 234577999999998766 888999999999999999999
Q ss_pred EcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHH
Q 012083 322 VRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCI 401 (471)
Q Consensus 322 ~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 401 (471)
+++. +.-....++|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+
T Consensus 272 ~~~~----------~~~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv 339 (406)
T COG1819 272 LGGA----------RDTLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV 339 (406)
T ss_pred cccc----------ccccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH
Confidence 8752 0011234788999999999999966666 999999999999999999999999999999999999
Q ss_pred HhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012083 402 CDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQI 469 (471)
Q Consensus 402 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 469 (471)
++ +|+|..+.. ..++.+.|+++|+++|.|+.|+++++++++.+++. +| .+...+.|++.
T Consensus 340 e~-~G~G~~l~~---~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~ 398 (406)
T COG1819 340 EE-LGAGIALPF---EELTEERLRAAVNEVLADDSYRRAAERLAEEFKEE---DG--PAKAADLLEEF 398 (406)
T ss_pred HH-cCCceecCc---ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHH
Confidence 99 799999986 78999999999999999999999999999999986 44 45566666553
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5e-42 Score=349.86 Aligned_cols=413 Identities=27% Similarity=0.374 Sum_probs=261.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc-
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK- 95 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 95 (471)
+.+++++++|++||++|+..+|+.|+++||+||++++.......... ........ .....+.+...+++++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKK-INPPPFEFLTIPDGLPEGWEDDD 82 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeee-eecChHHhhhhhhhhccchHHHH
Confidence 46788888899999999999999999999999999998765544321 00000000 0000111111112222221111
Q ss_pred -cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcC-CceEEEeCchHHHHHHHhchhhhhh
Q 012083 96 -DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLE-LKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
........+...+...+++....+..... .++|++|+|.+..+...+|.... ||...+.+..+.........+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~-- 159 (496)
T KOG1192|consen 83 LDISESLLELNKTCEDLLRDPLEKLLLLKS-EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS-- 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhc-CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc--
Confidence 11111334444455555554433332221 34999999998667777776665 89888888877765554332211
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCC----CCchhHHHHHHHH-------HHhhhccCcEEEEcchhhh
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGN----PSLQTLMFQYINV-------IRQNIEASDRILCTWFHEL 242 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~l~~s~~~l 242 (471)
+.+....+...+........+.+....++ ..... ............+ ......+.+..++|+.+.+
T Consensus 160 --~~p~~~~~~~~~~~~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 160 --YVPSPFSLSSGDDMSFPERVPNLIKKDLP-SFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred --ccCcccCccccccCcHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 11110000000000000000000000000 00000 0000001111100 0122356668888998888
Q ss_pred chhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCC--cEEEEecCccc---cCCHHHHHHHHHHHHhC-CC
Q 012083 243 APSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPG--SVIYAAFGSIS---KLSQQQFNELALGLELA-GQ 316 (471)
Q Consensus 243 ~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~GS~~---~~~~~~~~~~~~al~~~-~~ 316 (471)
+....+..+++++|||+...... .+. ..+.+|++..+.+ ++|||||||+. .++.+++..++.+++++ ++
T Consensus 237 ~~~~~~~~~~v~~IG~l~~~~~~---~~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~ 311 (496)
T KOG1192|consen 237 DFEPRPLLPKVIPIGPLHVKDSK---QKS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGV 311 (496)
T ss_pred CCCCCCCCCCceEECcEEecCcc---ccc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCc
Confidence 87546778999999999988431 111 1344777766554 79999999997 79999999999999999 88
Q ss_pred CEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhh-hccCcceeeeeccCcchhhHhhhcCCceeecccccchh
Q 012083 317 PFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKV-LAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHL 395 (471)
Q Consensus 317 ~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~l-L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 395 (471)
.|+|++... ....+++++.++.++||...+|+||.++ |.|+++++||||||+|||+|++++||||+++|+++||+
T Consensus 312 ~FiW~~~~~----~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~ 387 (496)
T KOG1192|consen 312 TFLWKYRPD----DSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQP 387 (496)
T ss_pred eEEEEecCC----cchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccch
Confidence 899999865 1111233332222568888899999998 69999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 012083 396 YIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQK 450 (471)
Q Consensus 396 ~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 450 (471)
.||+++++. |.|..+.. ..++...+.+++.+++++++|+++++++++.+++
T Consensus 388 ~Na~~i~~~-g~~~v~~~---~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 388 LNARLLVRH-GGGGVLDK---RDLVSEELLEAIKEILENEEYKEAAKRLSEILRD 438 (496)
T ss_pred hHHHHHHhC-CCEEEEeh---hhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHc
Confidence 999999994 77777765 5566656999999999999999999999999874
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=4.3e-26 Score=219.94 Aligned_cols=320 Identities=16% Similarity=0.134 Sum_probs=203.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
.||+|.+.++.||+.|.++||++|.++||+|+|+++..-.+.-. ....++.+..++..--.. ...
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l------------~~~~g~~~~~~~~~~l~~---~~~ 66 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTI------------IEKENIPYYSISSGKLRR---YFD 66 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccccc------------CcccCCcEEEEeccCcCC---Cch
Confidence 68999999999999999999999999999999999776543211 112278887776321111 111
Q ss_pred HHHHHHHHhhccH--HHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhh
Q 012083 98 AKMTRSISKVMPG--YLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
.+.+......... ....++++ .+||+||+...+. .+..+|..+++|++......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~--------------- 124 (352)
T PRK12446 67 LKNIKDPFLVMKGVMDAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM--------------- 124 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC---------------
Confidence 2222222211111 12233444 9999999987555 46789999999998843211
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC-CC
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL-PS 252 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~-~~ 252 (471)
.+++. + +.+ .+.++.+++. +++-. .... .+
T Consensus 125 ------------------~~g~~-----------------n----r~~------~~~a~~v~~~-f~~~~---~~~~~~k 155 (352)
T PRK12446 125 ------------------TPGLA-----------------N----KIA------LRFASKIFVT-FEEAA---KHLPKEK 155 (352)
T ss_pred ------------------CccHH-----------------H----HHH------HHhhCEEEEE-ccchh---hhCCCCC
Confidence 11111 1 111 1244555443 22211 1112 47
Q ss_pred cceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHH-HHHHHHHHHhCCCCEEEEEcCCCCCCCC
Q 012083 253 IIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQ-FNELALGLELAGQPFLCGVRPGFINGSS 331 (471)
Q Consensus 253 ~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~ 331 (471)
+..+|+...+.-. ........+.+.-.+++++|+|..||++....+. +..++..+.. +.+++|.++.+
T Consensus 156 ~~~tG~Pvr~~~~----~~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~------ 224 (352)
T PRK12446 156 VIYTGSPVREEVL----KGNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG------ 224 (352)
T ss_pred eEEECCcCCcccc----cccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc------
Confidence 7889977655321 0111111122333345679999999987655433 3444444432 47888888754
Q ss_pred CCCCchhHHhhCCCcEEEecc-chh-hhhccCcceeeeeccCcchhhHhhhcCCceeecccc-----cchhhhHHHHHhh
Q 012083 332 TNNPDGLVAKVADFGKMVKWA-PQE-KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWG-----HDHLYIKSCICDD 404 (471)
Q Consensus 332 ~~lp~~~~~~~~~nv~~~~~v-pq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~~v~~~ 404 (471)
.+... .+. ..+..+.+|+ +.+ .+|+++++ +|||||.+|++|++++|+|+|++|+. .||..||..+++
T Consensus 225 -~~~~~-~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~- 298 (352)
T PRK12446 225 -NLDDS-LQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER- 298 (352)
T ss_pred -hHHHH-Hhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-
Confidence 01110 101 1344566787 543 78977776 99999999999999999999999984 489999999999
Q ss_pred hcceeeecCCCCCCcCHhHHHHHHHHHhCcH-HHHHHHHH
Q 012083 405 WKIGLWLEPDDNGIIGRHEIKRKVDELLSND-VVRKNALK 443 (471)
Q Consensus 405 ~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~ 443 (471)
.|+|..+.. ..++++.|.+++.++++|+ .|++++++
T Consensus 299 ~g~~~~l~~---~~~~~~~l~~~l~~ll~~~~~~~~~~~~ 335 (352)
T PRK12446 299 QGYASVLYE---EDVTVNSLIKHVEELSHNNEKYKTALKK 335 (352)
T ss_pred CCCEEEcch---hcCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 699999974 7789999999999999886 55544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=9.2e-25 Score=209.91 Aligned_cols=307 Identities=18% Similarity=0.197 Sum_probs=194.2
Q ss_pred cEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCC-CCCcc
Q 012083 18 VHVLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEP-EDDRK 95 (471)
Q Consensus 18 ~~Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ 95 (471)
|||+|...+ +.||+.++++||++| |||+|+|++.....+.+.. .+....+++-... ....-
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 63 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP---------------RFPVREIPGLGPIQENGRL 63 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc---------------ccCEEEccCceEeccCCcc
Confidence 699998877 889999999999999 5999999999866544432 2334444322111 11111
Q ss_pred cHHHHHHHH---HhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhh
Q 012083 96 DEAKMTRSI---SKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFI 172 (471)
Q Consensus 96 ~~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 172 (471)
+........ .......++++++.++. .+||+||+|.. +.+..+|+..|||++.+........
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~---------- 128 (318)
T PF13528_consen 64 DRWKTVRNNIRWLARLARRIRREIRWLRE----FRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLH---------- 128 (318)
T ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHh----cCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHccc----------
Confidence 111111111 12233445555555555 89999999954 4567899999999999876543310
Q ss_pred hhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCC
Q 012083 173 EAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPS 252 (471)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 252 (471)
+... +. ........+.++..+. ....++..+..++. .. .....+
T Consensus 129 --------------------~~~~------~~----~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~---~~~~~~ 172 (318)
T PF13528_consen 129 --------------------PNFW------LP----WDQDFGRLIERYIDRY--HFPPADRRLALSFY-PP---LPPFFR 172 (318)
T ss_pred --------------------ccCC------cc----hhhhHHHHHHHhhhhc--cCCcccceecCCcc-cc---cccccc
Confidence 0000 00 0000011111111111 13445555555443 11 222335
Q ss_pred cceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCC
Q 012083 253 IIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAG-QPFLCGVRPGFINGSS 331 (471)
Q Consensus 253 ~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~ 331 (471)
+.++||+..+.... . . ..+++.|+|++|..... .++++++..+ +.+++. +..
T Consensus 173 ~~~~~p~~~~~~~~---~----------~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~------ 225 (318)
T PF13528_consen 173 VPFVGPIIRPEIRE---L----------P-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN------ 225 (318)
T ss_pred ccccCchhcccccc---c----------C-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC------
Confidence 67788887654310 0 0 12345899999874332 5667776666 566655 433
Q ss_pred CCCCchhHHhhCCCcEEEecc-c-hhhhhccCcceeeeeccCcchhhHhhhcCCceeeccc--ccchhhhHHHHHhhhcc
Q 012083 332 TNNPDGLVAKVADFGKMVKWA-P-QEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW--GHDHLYIKSCICDDWKI 407 (471)
Q Consensus 332 ~~lp~~~~~~~~~nv~~~~~v-p-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~~~~G~ 407 (471)
. .+...+|+.+.+|. + ..++|+.+++ +|||||+||++|++++|+|+|++|. ..||..||+++++ +|+
T Consensus 226 --~----~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~ 296 (318)
T PF13528_consen 226 --A----ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGL 296 (318)
T ss_pred --c----ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCC
Confidence 0 11126889988887 3 4578955555 9999999999999999999999999 7899999999999 799
Q ss_pred eeeecCCCCCCcCHhHHHHHHHHH
Q 012083 408 GLWLEPDDNGIIGRHEIKRKVDEL 431 (471)
Q Consensus 408 G~~~~~~~~~~~~~~~l~~~i~~l 431 (471)
|..+.. .+++++.|.+.|+++
T Consensus 297 ~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 297 GIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred eEEccc---ccCCHHHHHHHHhcC
Confidence 999975 789999999998764
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=5.2e-23 Score=197.26 Aligned_cols=307 Identities=15% Similarity=0.119 Sum_probs=174.1
Q ss_pred EEEEEcCCCc-ccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeE-EEeCCCC-CCCCCCcc
Q 012083 19 HVLLVSFPAQ-GHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVR-IVPLPDG-LEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~-GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~~~~~~~~ 95 (471)
||+|...+.. ||+.|.++|+++|++ ||+|+|+++......+... ++. +..+|.. +......-
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~--------------~~~~~~~~p~~~~~~~~~~~ 65 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY--------------GFKVFETFPGIKLKGEDGKV 65 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh--------------cCcceeccCCceEeecCCcC
Confidence 5778666655 999999999999999 9999999988755444443 332 2222210 00000011
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAG 175 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 175 (471)
+....+..........+.+..+.+++ .+||+||+| ..+.+..+|+.+|||++.+......
T Consensus 66 ~~~~~l~~~~~~~~~~~~~~~~~l~~----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------- 125 (321)
T TIGR00661 66 NIVKTLRNKEYSPKKAIRREINIIRE----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------- 125 (321)
T ss_pred cHHHHHHhhccccHHHHHHHHHHHHh----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---------------
Confidence 22222211001111234444444444 999999999 5456688999999999987652111
Q ss_pred CCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhh-hccCcEEEEcchhhhchhhhhhCCCcc
Q 012083 176 IISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQN-IEASDRILCTWFHELAPSANKILPSII 254 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~l~~~~~~~~~~~~ 254 (471)
..|+.. +. . .....+.... ...++..++..++... ...|.+.
T Consensus 126 ---------------~~~~~~----~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~ 168 (321)
T TIGR00661 126 ---------------RYPLKT----DL-----------I---VYPTMAALRIFNERCERFIVPDYPFPY----TICPKII 168 (321)
T ss_pred ---------------cCCccc----ch-----------h---HHHHHHHHHHhccccceEeeecCCCCC----CCCcccc
Confidence 001100 00 0 0000011111 1233444333322111 0111110
Q ss_pred --eeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCC
Q 012083 255 --PVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQ-PFLCGVRPGFINGSS 331 (471)
Q Consensus 255 --~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~ 331 (471)
.-+|... .+..++... +++.|++.+|+... ..+++++.+.+. .++ +...
T Consensus 169 ~~~~~~~~~------------~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i--~~~~------ 220 (321)
T TIGR00661 169 KNMEGPLIR------------YDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIANVKFV--CYSY------ 220 (321)
T ss_pred ccCCCcccc------------hhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCCeEEE--EeCC------
Confidence 0011110 111122222 24578888887322 345667766653 343 2221
Q ss_pred CCCCchhHHhhCCCcEEEeccc--hhhhhccCcceeeeeccCcchhhHhhhcCCceeeccccc--chhhhHHHHHhhhcc
Q 012083 332 TNNPDGLVAKVADFGKMVKWAP--QEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGH--DHLYIKSCICDDWKI 407 (471)
Q Consensus 332 ~~lp~~~~~~~~~nv~~~~~vp--q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~ 407 (471)
....+ ..++|+.+.+|.| ....| +.++++|||||.+|++|++++|+|++++|... ||..||+.+++ .|+
T Consensus 221 ~~~~~----~~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~ 293 (321)
T TIGR00661 221 EVAKN----SYNENVEIRRITTDNFKELI--KNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGC 293 (321)
T ss_pred CCCcc----ccCCCEEEEECChHHHHHHH--HhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCC
Confidence 01111 2357888999998 33667 55555999999999999999999999999854 89999999999 699
Q ss_pred eeeecCCCCCCcCHhHHHHHHHHHhCcHHHH
Q 012083 408 GLWLEPDDNGIIGRHEIKRKVDELLSNDVVR 438 (471)
Q Consensus 408 G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 438 (471)
|+.+.. ..+ ++.+++.++++|+.|+
T Consensus 294 ~~~l~~---~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 294 GIALEY---KEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred EEEcCh---hhH---HHHHHHHhcccccccc
Confidence 999975 333 7777888888887664
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1e-21 Score=187.16 Aligned_cols=326 Identities=15% Similarity=0.102 Sum_probs=204.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC-eEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc-c
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRI-KVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR-K 95 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 95 (471)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+... ....++.++.++.+-...... .
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l------------~~~~~~~~~~I~~~~~~~~~~~~ 68 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFL------------VKQYGIEFELIPSGGLRRKGSLK 68 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeee------------ccccCceEEEEecccccccCcHH
Confidence 48899999999999999999999999999 588887766555443 223388888887554443221 1
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhh
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
.....+..+. .....++++++ .+||+|+.-..+. .+..+|..+|||++..-.
T Consensus 69 ~~~~~~~~~~--~~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEq----------------- 122 (357)
T COG0707 69 LLKAPFKLLK--GVLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQ----------------- 122 (357)
T ss_pred HHHHHHHHHH--HHHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEec-----------------
Confidence 2222222221 22335566666 9999999966554 667899999999999422
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCCc
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPSI 253 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 253 (471)
+ ..+|.. + +++. +.++.+.+.. +..+- .....++
T Consensus 123 -n---------------~~~G~a-----------------n----k~~~------~~a~~V~~~f-~~~~~--~~~~~~~ 156 (357)
T COG0707 123 -N---------------AVPGLA-----------------N----KILS------KFAKKVASAF-PKLEA--GVKPENV 156 (357)
T ss_pred -C---------------CCcchh-----------------H----HHhH------Hhhceeeecc-ccccc--cCCCCce
Confidence 1 112211 0 1111 1333333332 21110 1112257
Q ss_pred ceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHH-HHHHHHHHHhCCCCEEEEEcCCCCCCCCC
Q 012083 254 IPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQ-FNELALGLELAGQPFLCGVRPGFINGSST 332 (471)
Q Consensus 254 ~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~-~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 332 (471)
..+|--....-. . .+.. . .+ .+...++++|+|..||++...-+. +..+...+.+ ...+++.++..
T Consensus 157 ~~tG~Pvr~~~~--~-~~~~-~-~~-~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~------- 222 (357)
T COG0707 157 VVTGIPVRPEFE--E-LPAA-E-VR-KDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN------- 222 (357)
T ss_pred EEecCcccHHhh--c-cchh-h-hh-hhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------
Confidence 777743332210 0 0110 0 01 111225679999999975543222 2233333333 46777777654
Q ss_pred CCCchhHHhh-CCC-cEEEeccchh-hhhccCcceeeeeccCcchhhHhhhcCCceeecccc----cchhhhHHHHHhhh
Q 012083 333 NNPDGLVAKV-ADF-GKMVKWAPQE-KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWG----HDHLYIKSCICDDW 405 (471)
Q Consensus 333 ~lp~~~~~~~-~~n-v~~~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~ 405 (471)
.+ +...... ..+ +.+.+|..++ .+++-+++ +||++|.+|+.|++++|+|++.+|+- .||..||..+++ .
T Consensus 223 ~~-~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~-~ 298 (357)
T COG0707 223 DL-EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEK-A 298 (357)
T ss_pred hH-HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHh-C
Confidence 11 1111111 223 6677999876 68866666 99999999999999999999999982 489999999999 5
Q ss_pred cceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 012083 406 KIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKS 451 (471)
Q Consensus 406 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~ 451 (471)
|.|..+.- ..+|.+.+.+.|.++++++ ++.++|++..++.
T Consensus 299 gaa~~i~~---~~lt~~~l~~~i~~l~~~~---~~l~~m~~~a~~~ 338 (357)
T COG0707 299 GAALVIRQ---SELTPEKLAELILRLLSNP---EKLKAMAENAKKL 338 (357)
T ss_pred CCEEEecc---ccCCHHHHHHHHHHHhcCH---HHHHHHHHHHHhc
Confidence 99999984 7799999999999999984 4555555555543
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.87 E-value=4.2e-20 Score=180.52 Aligned_cols=337 Identities=14% Similarity=0.112 Sum_probs=201.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch--hhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC--ERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
|||+|+..+..||...++.|+++|.++||+|++++.+... +..++ .+++++.++..-... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~---~ 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK--------------AGIEFHFIPSGGLRR---K 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc--------------CCCcEEEEeccCcCC---C
Confidence 8999999999999999999999999999999999886521 11111 266666664321111 1
Q ss_pred cHHHHHHHHHh--hccHHHHHHHHHHhcccCCCCeeEEEECCCc--chHHHHHHHcCCceEEEeCchHHHHHHHhchhhh
Q 012083 96 DEAKMTRSISK--VMPGYLEELIQKINQQEEDEKITCVIADVTF--GWALQVAAKLELKKASIYTSAPGILAMIMNIPKF 171 (471)
Q Consensus 96 ~~~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 171 (471)
.....+..... .....+.+++++ .+||+|++.... ..+..++...++|++......
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~ik~-------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------- 124 (357)
T PRK00726 65 GSLANLKAPFKLLKGVLQARKILKR-------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------- 124 (357)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHh-------cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------
Confidence 11111111111 111123344444 899999999632 245567788899998632100
Q ss_pred hhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCC
Q 012083 172 IEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILP 251 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 251 (471)
.++ ...++. ...+|.+++.+...+. .....
T Consensus 125 --------------------~~~---------------------~~~r~~------~~~~d~ii~~~~~~~~---~~~~~ 154 (357)
T PRK00726 125 --------------------VPG---------------------LANKLL------ARFAKKVATAFPGAFP---EFFKP 154 (357)
T ss_pred --------------------Ccc---------------------HHHHHH------HHHhchheECchhhhh---ccCCC
Confidence 000 001111 1234555544433221 12235
Q ss_pred CcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHH-HHHHHHHhCCC--CEEEEEcCCCCC
Q 012083 252 SIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFN-ELALGLELAGQ--PFLCGVRPGFIN 328 (471)
Q Consensus 252 ~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~-~~~~al~~~~~--~~i~~~~~~~~~ 328 (471)
++.++|........ . +.... .-+...++.++|++..|+. ....+. .+.+++.++.. .+++.++..
T Consensus 155 ~i~vi~n~v~~~~~--~--~~~~~--~~~~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g--- 222 (357)
T PRK00726 155 KAVVTGNPVREEIL--A--LAAPP--ARLAGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKG--- 222 (357)
T ss_pred CEEEECCCCChHhh--c--ccchh--hhccCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCC---
Confidence 77777755443211 0 00000 1112222345777766653 222232 33366655443 344555543
Q ss_pred CCCCCCCchhHHh--hCCCcEEEeccc-hhhhhccCcceeeeeccCcchhhHhhhcCCceeeccc----ccchhhhHHHH
Q 012083 329 GSSTNNPDGLVAK--VADFGKMVKWAP-QEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW----GHDHLYIKSCI 401 (471)
Q Consensus 329 ~~~~~lp~~~~~~--~~~nv~~~~~vp-q~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v 401 (471)
.. +.+.+. ..-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+
T Consensus 223 -~~----~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i 295 (357)
T PRK00726 223 -DL----EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL 295 (357)
T ss_pred -cH----HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH
Confidence 11 122111 222377789984 4589966666 9999999999999999999999997 46899999999
Q ss_pred HhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012083 402 CDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQ 468 (471)
Q Consensus 402 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 468 (471)
.+ .|.|..+.. ..++.++|.++|.++++|+++++++.+-+++..+ ..+.....+.+.+.
T Consensus 296 ~~-~~~g~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 354 (357)
T PRK00726 296 VD-AGAALLIPQ---SDLTPEKLAEKLLELLSDPERLEAMAEAARALGK----PDAAERLADLIEEL 354 (357)
T ss_pred HH-CCCEEEEEc---ccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCC----cCHHHHHHHHHHHH
Confidence 99 699999975 5578999999999999999888777776665533 34444444444443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=2.7e-18 Score=167.31 Aligned_cols=323 Identities=14% Similarity=0.074 Sum_probs=192.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEA 98 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (471)
+|+|...++.||...+..|++.|.++||+|++++....... . . ....++++..++..-... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~-~----------~~~~~~~~~~~~~~~~~~---~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-R-L----------VPKAGIPLHTIPVGGLRR---KGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-h-c----------ccccCCceEEEEecCcCC---CChH
Confidence 58899999999999999999999999999999987543211 1 0 111256666654321111 1112
Q ss_pred HHHHHHHh--hccHHHHHHHHHHhcccCCCCeeEEEECCC--cchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhh
Q 012083 99 KMTRSISK--VMPGYLEELIQKINQQEEDEKITCVIADVT--FGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEA 174 (471)
Q Consensus 99 ~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 174 (471)
+.+..+.. .....+.+++++ .+||+|++... ...+..+|...++|++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~-------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~----------------- 121 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKK-------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN----------------- 121 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-----------------
Confidence 22222111 111223444444 89999998753 335567788899999863110
Q ss_pred CCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCCcc
Q 012083 175 GIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPSII 254 (471)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~ 254 (471)
..++ ...++. ...++.+++.+....+. -...++.
T Consensus 122 ----------------~~~~---------------------~~~~~~------~~~~~~vi~~s~~~~~~---~~~~~~~ 155 (350)
T cd03785 122 ----------------AVPG---------------------LANRLL------ARFADRVALSFPETAKY---FPKDKAV 155 (350)
T ss_pred ----------------CCcc---------------------HHHHHH------HHhhCEEEEcchhhhhc---CCCCcEE
Confidence 0000 000111 12467777776554442 1134677
Q ss_pred eeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCH-HHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCC
Q 012083 255 PVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQ-QQFNELALGLELAGQPFLCGVRPGFINGSSTN 333 (471)
Q Consensus 255 ~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 333 (471)
.+|........ . +.+. ...+...+++++|++..|+...... +.+..++..+.+.+..+++.++.. .
T Consensus 156 ~i~n~v~~~~~--~--~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----~--- 222 (350)
T cd03785 156 VTGNPVREEIL--A--LDRE--RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----D--- 222 (350)
T ss_pred EECCCCchHHh--h--hhhh--HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----c---
Confidence 77754432210 0 0000 1223333345567776676432211 122233333433334455555543 1
Q ss_pred CCchhHHhh---CCCcEEEecc-chhhhhccCcceeeeeccCcchhhHhhhcCCceeeccc----ccchhhhHHHHHhhh
Q 012083 334 NPDGLVAKV---ADFGKMVKWA-PQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW----GHDHLYIKSCICDDW 405 (471)
Q Consensus 334 lp~~~~~~~---~~nv~~~~~v-pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~ 405 (471)
.+.+.+.. .+|+.+.+|+ ....+|+.+++ +|+++|.+|+.||+.+|+|+++.|. ..+|..|+..+.+ .
T Consensus 223 -~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~ 298 (350)
T cd03785 223 -LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-A 298 (350)
T ss_pred -HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-C
Confidence 12222222 4688999998 34578866666 9999999999999999999999986 4678999999999 6
Q ss_pred cceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 406 KIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 406 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
|.|..+.. ...+.+++.++|+++++|++.++++.+-+.
T Consensus 299 g~g~~v~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 299 GAAVLIPQ---EELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred CCEEEEec---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999974 446899999999999998866555444433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=7.9e-17 Score=156.89 Aligned_cols=318 Identities=14% Similarity=0.107 Sum_probs=178.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|||+|+..+..||+.....|+++|.++||+|++++.+.... ... ....+++++.++..-... ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~----------~~~~g~~~~~i~~~~~~~---~~~ 65 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRL----------VPKAGIEFYFIPVGGLRR---KGS 65 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcc----------cccCCCceEEEeccCcCC---CCh
Confidence 49999999999999988899999999999999998743211 000 011267776664321111 122
Q ss_pred HHHHHHHHhh--ccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhh
Q 012083 98 AKMTRSISKV--MPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 98 ~~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
.+.+...... ....+.+++++ .+||+|++..... .+..++...++|++.....
T Consensus 66 ~~~l~~~~~~~~~~~~l~~~i~~-------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~---------------- 122 (348)
T TIGR01133 66 FRLIKTPLKLLKAVFQARRILKK-------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN---------------- 122 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC----------------
Confidence 2222211110 11123444454 8999999975433 3455788889998742100
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCCc
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPSI 253 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 253 (471)
..+ ....+++ .+.++.+++.+...-+.. ..
T Consensus 123 -----------------~~~---------------------~~~~~~~------~~~~d~ii~~~~~~~~~~------~~ 152 (348)
T TIGR01133 123 -----------------AVP---------------------GLTNKLL------SRFAKKVLISFPGAKDHF------EA 152 (348)
T ss_pred -----------------CCc---------------------cHHHHHH------HHHhCeeEECchhHhhcC------Cc
Confidence 000 0001111 135666666654332221 22
Q ss_pred ceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCC
Q 012083 254 IPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLE---LAGQPFLCGVRPGFINGS 330 (471)
Q Consensus 254 ~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~ 330 (471)
..||........ .. +.. ...+...++.++|.+..|+... ......+.++++ ..+.++++..++. .
T Consensus 153 ~~i~n~v~~~~~--~~-~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~----~ 220 (348)
T TIGR01133 153 VLVGNPVRQEIR--SL-PVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN----D 220 (348)
T ss_pred eEEcCCcCHHHh--cc-cch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc----h
Confidence 455533321110 00 000 0122222334455554455332 221222334443 3345565544432 1
Q ss_pred CCCCCchhHHhhCC-C-cEEEecc--chhhhhccCcceeeeeccCcchhhHhhhcCCceeecccc---cchhhhHHHHHh
Q 012083 331 STNNPDGLVAKVAD-F-GKMVKWA--PQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWG---HDHLYIKSCICD 403 (471)
Q Consensus 331 ~~~lp~~~~~~~~~-n-v~~~~~v--pq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~~v~~ 403 (471)
. +.+.+...+ + ...+.|. ....+|+.+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+.+
T Consensus 221 ---~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~ 294 (348)
T TIGR01133 221 ---L-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED 294 (348)
T ss_pred ---H-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH
Confidence 1 222221211 1 1233344 34578866666 99999988999999999999999873 468889999998
Q ss_pred hhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHH
Q 012083 404 DWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLK 445 (471)
Q Consensus 404 ~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 445 (471)
.|.|..+.. ...+.++|.++++++++|++++++..+-+
T Consensus 295 -~~~G~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 295 -LGAGLVIRQ---KELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred -CCCEEEEec---ccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 699998864 55679999999999999987665544433
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.77 E-value=3.1e-16 Score=142.38 Aligned_cols=328 Identities=15% Similarity=0.127 Sum_probs=200.5
Q ss_pred CcEEEEEcCC--CcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 17 NVHVLLVSFP--AQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 17 ~~~Il~~~~~--~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
.+||+|.+.- +-||+..+..+|++|++. |.+|++++......-+. ...|++|+.+|.......
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~-------------~~~gVd~V~LPsl~k~~~ 75 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP-------------GPAGVDFVKLPSLIKGDN 75 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC-------------CcccCceEecCceEecCC
Confidence 3699999977 558999999999999997 99999999977655442 334999999996543331
Q ss_pred -------CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 93 -------DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 93 -------~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
...+. +.+.+.-...+...++. .+||++|+|.+-.+. -.++ .| +..+
T Consensus 76 G~~~~~d~~~~l----~e~~~~Rs~lil~t~~~-------fkPDi~IVd~~P~Gl---r~EL-~p-----------tL~y 129 (400)
T COG4671 76 GEYGLVDLDGDL----EETKKLRSQLILSTAET-------FKPDIFIVDKFPFGL---RFEL-LP-----------TLEY 129 (400)
T ss_pred CceeeeecCCCH----HHHHHHHHHHHHHHHHh-------cCCCEEEEeccccch---hhhh-hH-----------HHHH
Confidence 11122 22221122223333344 999999999775531 1110 00 0001
Q ss_pred hchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchh
Q 012083 166 MNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPS 245 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 245 (471)
.. ..+ + ..+-++. ...|.+ ......-.++.....+ -+..|.+++-.+|+|..+
T Consensus 130 l~-----~~~--t-----------~~vL~lr--~i~D~p-~~~~~~w~~~~~~~~I------~r~yD~V~v~GdP~f~d~ 182 (400)
T COG4671 130 LK-----TTG--T-----------RLVLGLR--SIRDIP-QELEADWRRAETVRLI------NRFYDLVLVYGDPDFYDP 182 (400)
T ss_pred Hh-----hcC--C-----------cceeehH--hhhhch-hhhccchhhhHHHHHH------HHhheEEEEecCccccCh
Confidence 10 000 0 0000000 001111 0000000011111111 146788888888877544
Q ss_pred hhhh------CCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHh-CCCC-
Q 012083 246 ANKI------LPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLEL-AGQP- 317 (471)
Q Consensus 246 ~~~~------~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~-~~~~- 317 (471)
...+ -.++.|+|.+-.+-+ ....|.. .. +++.-|+||-|- +....+.+...+.|-.. .+.+
T Consensus 183 ~~~~~~~~~i~~k~~ytG~vq~~~~--~~~~p~~-------~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~ 251 (400)
T COG4671 183 LTEFPFAPAIRAKMRYTGFVQRSLP--HLPLPPH-------EA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNH 251 (400)
T ss_pred hhcCCccHhhhhheeEeEEeeccCc--CCCCCCc-------CC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCc
Confidence 2322 238899998822111 1111111 11 344588888886 44456666666665433 3333
Q ss_pred -EEEEEcCCCCCCCCCCCCchhHH----hhC--CCcEEEeccchh-hhhccCcceeeeeccCcchhhHhhhcCCceeecc
Q 012083 318 -FLCGVRPGFINGSSTNNPDGLVA----KVA--DFGKMVKWAPQE-KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWP 389 (471)
Q Consensus 318 -~i~~~~~~~~~~~~~~lp~~~~~----~~~--~nv~~~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P 389 (471)
.++.+++ .+|..-.+ ..+ +++.+..|--+. .+++.++. +|+-||+||++|-|++|+|.+++|
T Consensus 252 ~~~ivtGP--------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivP 321 (400)
T COG4671 252 KWLIVTGP--------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVP 321 (400)
T ss_pred ceEEEeCC--------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEec
Confidence 5555654 35543332 334 778888998765 68855555 999999999999999999999999
Q ss_pred cc---cchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 390 WG---HDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 390 ~~---~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
.. -||...|+|+++ ||+--.+.+ +.++++.+.+++...++-|
T Consensus 322 r~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~~P 366 (400)
T COG4671 322 RAAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALARP 366 (400)
T ss_pred cCCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhcccCC
Confidence 85 499999999999 999999987 7899999999999999843
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.77 E-value=5.2e-17 Score=159.10 Aligned_cols=350 Identities=13% Similarity=0.020 Sum_probs=200.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
.||+|...++.||+.|. +|+++|.++|++|+|++.... ..++.+.+ .++.+..++. ..+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~----------~~~~~~~l~v--------~G~ 64 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE----------VLYSMEELSV--------MGL 64 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc----------cccChHHhhh--------ccH
Confidence 68999999999999999 999999999999999987532 34444211 0233333321 111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCC-cch--HHHHHHHcCCceEEEeC-chHHHHHHHhchhhhhh
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVT-FGW--ALQVAAKLELKKASIYT-SAPGILAMIMNIPKFIE 173 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~-~~~--~~~~A~~lgiP~v~~~~-~~~~~~~~~~~~p~~~~ 173 (471)
.+.+..+. .....+.+..+.+++ .+||+||.-.. ... ....|+.+|||++...+ ..+
T Consensus 65 ~~~l~~~~-~~~~~~~~~~~~l~~----~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~w-------------- 125 (385)
T TIGR00215 65 REVLGRLG-RLLKIRKEVVQLAKQ----AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVW-------------- 125 (385)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHh----cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHh--------------
Confidence 11122111 111122233333333 89999997443 222 22378899999987531 111
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCCc
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPSI 253 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~ 253 (471)
.|. ....+.+. +.+|.+++.+..+-+.. ....-+.
T Consensus 126 --------------------------------aw~--~~~~r~l~----------~~~d~v~~~~~~e~~~~-~~~g~~~ 160 (385)
T TIGR00215 126 --------------------------------AWR--KWRAKKIE----------KATDFLLAILPFEKAFY-QKKNVPC 160 (385)
T ss_pred --------------------------------hcC--cchHHHHH----------HHHhHhhccCCCcHHHH-HhcCCCE
Confidence 110 00011111 24555555554443332 1222356
Q ss_pred ceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCC
Q 012083 254 IPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPGFIN 328 (471)
Q Consensus 254 ~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~ 328 (471)
.+||.-..+... ...+...+..+-+.-.+++++|.+-.||....-...+..+++++..+ +.++++.......
T Consensus 161 ~~vGnPv~~~~~--~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~- 237 (385)
T TIGR00215 161 RFVGHPLLDAIP--LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR- 237 (385)
T ss_pred EEECCchhhhcc--ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh-
Confidence 678844332210 00011112222233334566888888886442223344455554432 3345554433200
Q ss_pred CCCCCCCchhHHhh--CCCcEEEeccchhhhhccCcceeeeeccCcchhhHhhhcCCceeec----cccc---------c
Q 012083 329 GSSTNNPDGLVAKV--ADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCW----PWGH---------D 393 (471)
Q Consensus 329 ~~~~~lp~~~~~~~--~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~----P~~~---------D 393 (471)
...+ +.+.+.. ..++.+..+ ....+++.+++ +|+-+|..|+ |++.+|+|+|++ |+.. .
T Consensus 238 --~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~ 310 (385)
T TIGR00215 238 --RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTD 310 (385)
T ss_pred --HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCC
Confidence 0000 1111111 123333322 23358866666 9999999988 999999999999 8742 3
Q ss_pred hhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012083 394 HLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND----VVRKNALKLKELAQKSVTKEGSSSKNLEYFI 466 (471)
Q Consensus 394 Q~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 466 (471)
|..|++.++. .++...+.- ..+|++.|.+.+.++|.|+ +++++.++--+++++...++|.+..+.+.++
T Consensus 311 ~~~~~nil~~-~~~~pel~q---~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 311 YISLPNILAN-RLLVPELLQ---EECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVL 383 (385)
T ss_pred eeeccHHhcC-CccchhhcC---CCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 8889999999 599999863 7799999999999999999 8777777777777777666677776655443
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.73 E-value=2.3e-15 Score=148.29 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=102.1
Q ss_pred CCCcEEEEecCccccCCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCCchhH---HhhCCCcEEEeccchh-hhh
Q 012083 284 PPGSVIYAAFGSISKLSQQQFNELALGLELA-GQPFLCGVRPGFINGSSTNNPDGLV---AKVADFGKMVKWAPQE-KVL 358 (471)
Q Consensus 284 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~---~~~~~nv~~~~~vpq~-~lL 358 (471)
+++++|++..|+.... ..+..+++++.+. +.++++..+.+ ..+.+.+. +..++|+.+.+|+++. .++
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~------~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~ 271 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN------EALKQSLEDLQETNPDALKVFGYVENIDELF 271 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC------HHHHHHHHHHHhcCCCcEEEEechhhHHHHH
Confidence 3456788877876432 2345667777543 45666666533 01111221 1224688999999875 789
Q ss_pred ccCcceeeeeccCcchhhHhhhcCCceeec-ccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHH
Q 012083 359 AHPSVACYLTHCGWNSTMEGISMGVPFLCW-PWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVV 437 (471)
Q Consensus 359 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 437 (471)
+.+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~~ll~~~~~ 341 (380)
T PRK13609 272 RVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTEALLQDDMK 341 (380)
T ss_pred HhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHHHHHCCHHH
Confidence 77777 99999988999999999999985 666778889999888 59988653 568999999999999876
Q ss_pred HHHHHHHH
Q 012083 438 RKNALKLK 445 (471)
Q Consensus 438 ~~~a~~l~ 445 (471)
+++.++-+
T Consensus 342 ~~~m~~~~ 349 (380)
T PRK13609 342 LLQMKEAM 349 (380)
T ss_pred HHHHHHHH
Confidence 65554433
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.69 E-value=3.3e-15 Score=139.70 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=75.2
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCCchhHHh--hCCCcEEEeccchh-hhhccC
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLELA--GQPFLCGVRPGFINGSSTNNPDGLVAK--VADFGKMVKWAPQE-KVLAHP 361 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~-~lL~~~ 361 (471)
+.|++++|... .......+++++.+. +.++.+++++. ....+.+.+. ..+|+.+..|++++ .+|+.+
T Consensus 171 ~~iLi~~GG~d--~~~~~~~~l~~l~~~~~~~~i~vv~G~~------~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGAD--PDNLTLKLLSALAESQINISITLVTGSS------NPNLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcC--CcCHHHHHHHHHhccccCceEEEEECCC------CcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 57899998532 223445566777653 45677777654 1122222222 24688889999987 899666
Q ss_pred cceeeeeccCcchhhHhhhcCCceeecccccchhhhHHH
Q 012083 362 SVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSC 400 (471)
Q Consensus 362 ~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~ 400 (471)
++ +||+|| +|++|++++|+|++++|...+|..||+.
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 66 999999 9999999999999999999999999875
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.67 E-value=9.3e-15 Score=144.11 Aligned_cols=345 Identities=13% Similarity=0.097 Sum_probs=176.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|||+|...++.||+.|.. ++++|.++++++.+++.... ..++.+. ..++.++.++- ..+
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~l~~--------~g~ 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC----------ESLFDMEELAV--------MGL 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC----------ccccCHHHhhh--------ccH
Confidence 799999999999999999 99999998888888765432 2333211 01233332221 111
Q ss_pred HHHHHHHHh--hccHHHHHHHHHHhcccCCCCeeEEEECCC-cchH--HHHHHHcCCceEEEeCchHHHHHHHhchhhhh
Q 012083 98 AKMTRSISK--VMPGYLEELIQKINQQEEDEKITCVIADVT-FGWA--LQVAAKLELKKASIYTSAPGILAMIMNIPKFI 172 (471)
Q Consensus 98 ~~~~~~~~~--~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~-~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 172 (471)
.+.+..+.. .....+++++++ .+||+|++-.. ..+. ...|...|||++...... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~-------~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~-~------------ 120 (380)
T PRK00025 61 VEVLPRLPRLLKIRRRLKRRLLA-------EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS-V------------ 120 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-h------------
Confidence 222222111 122234455555 99999887432 2233 334678899988642210 0
Q ss_pred hhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCCC
Q 012083 173 EAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILPS 252 (471)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~ 252 (471)
|.+. ...... ....++.+++.+...-+.. ....-+
T Consensus 121 --------------------------------~~~~-----~~~~~~-------~~~~~d~i~~~~~~~~~~~-~~~g~~ 155 (380)
T PRK00025 121 --------------------------------WAWR-----QGRAFK-------IAKATDHVLALFPFEAAFY-DKLGVP 155 (380)
T ss_pred --------------------------------hhcC-----chHHHH-------HHHHHhhheeCCccCHHHH-HhcCCC
Confidence 0000 000000 1224455565554333221 111123
Q ss_pred cceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCC
Q 012083 253 IIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPGFI 327 (471)
Q Consensus 253 ~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~ 327 (471)
+.++|-...+.. ...+....+...+.-.+++++|++..||........+..++++++.+ +.+++++.+..
T Consensus 156 ~~~~G~p~~~~~---~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-- 230 (380)
T PRK00025 156 VTFVGHPLADAI---PLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-- 230 (380)
T ss_pred eEEECcCHHHhc---ccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh--
Confidence 666763322211 00011122222233333455777777764332222244455554322 33566655422
Q ss_pred CCCCCCCCchhHHhh----CCCcEEEeccch-hhhhccCcceeeeeccCcchhhHhhhcCCceeecccc------c--ch
Q 012083 328 NGSSTNNPDGLVAKV----ADFGKMVKWAPQ-EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWG------H--DH 394 (471)
Q Consensus 328 ~~~~~~lp~~~~~~~----~~nv~~~~~vpq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~------~--DQ 394 (471)
...+.+.+.. .-++.+.. +. ..+++.+++ +|+.+|.+++ |++.+|+|+|+.|-. . .|
T Consensus 231 -----~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~ 300 (380)
T PRK00025 231 -----KRREQIEEALAEYAGLEVTLLD--GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRL 300 (380)
T ss_pred -----hhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHH
Confidence 1111222212 12333322 22 467866666 9999998887 999999999998432 1 22
Q ss_pred hhh-----HHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012083 395 LYI-----KSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQ 468 (471)
Q Consensus 395 ~~n-----a~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 468 (471)
..| +..+++ .+++..+.. ...+++.|.+++.++++|++.+++..+-.+.+++.. ..|+.....+.+.+.
T Consensus 301 ~~~~~~~l~~~~~~-~~~~~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~ 374 (380)
T PRK00025 301 VKVPYVSLPNLLAG-RELVPELLQ---EEATPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLEL 374 (380)
T ss_pred HcCCeeehHHHhcC-CCcchhhcC---CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 222 233333 233433432 557889999999999999987776666555555543 345555444444443
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.63 E-value=3.2e-13 Score=133.19 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=101.5
Q ss_pred CCCcEEEEecCccccCCHHHHHHHHHHH-Hh-CCCCEEEEEcCCCCCCCCCCCCchhHHh--hCCCcEEEeccchh-hhh
Q 012083 284 PPGSVIYAAFGSISKLSQQQFNELALGL-EL-AGQPFLCGVRPGFINGSSTNNPDGLVAK--VADFGKMVKWAPQE-KVL 358 (471)
Q Consensus 284 ~~~~vv~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~-~lL 358 (471)
+++++|++..|++.. ...+..+++++ +. .+.++++..+++ ..+-+.+.+. ..+++.+.+|+.+. .++
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~------~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~ 271 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS------KELKRSLTAKFKSNENVLILGYTKHMNEWM 271 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC------HHHHHHHHHHhccCCCeEEEeccchHHHHH
Confidence 345688888898652 23355555554 22 235666665543 1111222221 13578888999765 688
Q ss_pred ccCcceeeeeccCcchhhHhhhcCCceeec-ccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHH
Q 012083 359 AHPSVACYLTHCGWNSTMEGISMGVPFLCW-PWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVV 437 (471)
Q Consensus 359 ~~~~~~~~ItHgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 437 (471)
+.+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.+++.++|.++++|++.
T Consensus 272 ~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~~~~~ 341 (391)
T PRK13608 272 ASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTNGNEQ 341 (391)
T ss_pred HhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhcCHHH
Confidence 77777 99988888999999999999998 776778899999999 69998763 678999999999999754
Q ss_pred HHHHHHHHHHHHH
Q 012083 438 RKNALKLKELAQK 450 (471)
Q Consensus 438 ~~~a~~l~~~~~~ 450 (471)
++ +|++..++
T Consensus 342 ~~---~m~~~~~~ 351 (391)
T PRK13608 342 LT---NMISTMEQ 351 (391)
T ss_pred HH---HHHHHHHH
Confidence 44 34444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.55 E-value=4.2e-12 Score=125.01 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=98.2
Q ss_pred ccCCCCCcEEEEecCccccCCHHHHHHHHHHHHh---------CCCCEEEEEcCCCCCCCCCCCCchhHHh-hCCCcEEE
Q 012083 280 LDKQPPGSVIYAAFGSISKLSQQQFNELALGLEL---------AGQPFLCGVRPGFINGSSTNNPDGLVAK-VADFGKMV 349 (471)
Q Consensus 280 l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~---------~~~~~i~~~~~~~~~~~~~~lp~~~~~~-~~~nv~~~ 349 (471)
+.-.+++++|++..|+..... +..+++++.. .+..+++.++.+ ..+-+.+.+. ...++++.
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~---~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~------~~~~~~L~~~~~~~~v~~~ 270 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGP---LEETARALGDSLYDKNLGKPIGQVVVICGRN------KKLQSKLESRDWKIPVKVR 270 (382)
T ss_pred cCCCCCCcEEEEECCCccccc---HHHHHHHHHHhhccccccCCCceEEEEECCC------HHHHHHHHhhcccCCeEEE
Confidence 333344567777766654333 2333333322 234566666643 1111111111 13467888
Q ss_pred eccchh-hhhccCcceeeeeccCcchhhHhhhcCCceeecccccchh-hhHHHHHhhhcceeeecCCCCCCcCHhHHHHH
Q 012083 350 KWAPQE-KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHL-YIKSCICDDWKIGLWLEPDDNGIIGRHEIKRK 427 (471)
Q Consensus 350 ~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~ 427 (471)
+|+++. .+++.+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|..+. ++++|.++
T Consensus 271 G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~~-------~~~~la~~ 340 (382)
T PLN02605 271 GFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFSE-------SPKEIARI 340 (382)
T ss_pred eccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeecC-------CHHHHHHH
Confidence 999875 78866666 999999999999999999999998766665 69998998 59998652 78999999
Q ss_pred HHHHhCc-HHHHHHHHHHHHH
Q 012083 428 VDELLSN-DVVRKNALKLKEL 447 (471)
Q Consensus 428 i~~ll~~-~~~~~~a~~l~~~ 447 (471)
|.+++.| ++.+++.++.+++
T Consensus 341 i~~ll~~~~~~~~~m~~~~~~ 361 (382)
T PLN02605 341 VAEWFGDKSDELEAMSENALK 361 (382)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 9999988 6655444444433
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.53 E-value=4.7e-12 Score=124.28 Aligned_cols=333 Identities=12% Similarity=0.006 Sum_probs=187.5
Q ss_pred CCCcccHHHHHHHHHHHHh--CCCeEE---EEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHH
Q 012083 25 FPAQGHVASLMKLAHRLAD--CRIKVT---FVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAK 99 (471)
Q Consensus 25 ~~~~GH~~p~~~La~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 99 (471)
..++|-=.-.++||++|++ .|++|. ++++..-.+ +.. ....| .+..+|.+=- ....+.+
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~---------ip~~g-~~~~~~sgg~---~~~~~~~ 67 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLG---------IPIIG-PTKELPSGGF---SYQSLRG 67 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCC---------CceeC-CCCCCCCCCc---cCCCHHH
Confidence 3566767778899999998 699999 998876543 211 11113 4444432211 1233444
Q ss_pred HHHHHHhhccHHHHHHHHHHhcccCCC--CeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCC
Q 012083 100 MTRSISKVMPGYLEELIQKINQQEEDE--KITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGII 177 (471)
Q Consensus 100 ~~~~~~~~~~~~~~~ll~~l~~~~~~~--~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~ 177 (471)
.+....+.....+.+-+..+++ + +||+||+-.-+. +..+|...|+|++++.+.-......
T Consensus 68 ~~~~~~~gl~~~~~~~~~~~~~----~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~~------------- 129 (396)
T TIGR03492 68 LLRDLRAGLVGLTLGQWRALRK----WAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYWE------------- 129 (396)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH----HhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceeec-------------
Confidence 4444443222222222223333 5 999999876665 8889999999999965532211000
Q ss_pred CCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHh-hhccCcEEEEcchhhhchhhhhhCCCccee
Q 012083 178 SSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQ-NIEASDRILCTWFHELAPSANKILPSIIPV 256 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~~~~~~~v 256 (471)
+..+.+ ..+....+||....++ +... ..+.++.+++++...-+.. ....-++.++
T Consensus 130 ~~~~~~-~~~~~~~~~G~~~~p~----------------------e~n~l~~~~a~~v~~~~~~t~~~l-~~~g~k~~~v 185 (396)
T TIGR03492 130 SGPRRS-PSDEYHRLEGSLYLPW----------------------ERWLMRSRRCLAVFVRDRLTARDL-RRQGVRASYL 185 (396)
T ss_pred CCCCCc-cchhhhccCCCccCHH----------------------HHHHhhchhhCEEeCCCHHHHHHH-HHCCCeEEEe
Confidence 000000 0001111222211111 0111 1256788887775544332 2222488999
Q ss_pred ccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCCC
Q 012083 257 GPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA----GQPFLCGVRPGFINGSST 332 (471)
Q Consensus 257 Gp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~ 332 (471)
|-...+.-. ..... . + .+++++|.+--||....-.+.+..++++++.+ +..|++.+.+..
T Consensus 186 GnPv~d~l~-----~~~~~--~-l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~------ 249 (396)
T TIGR03492 186 GNPMMDGLE-----PPERK--P-L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL------ 249 (396)
T ss_pred CcCHHhcCc-----ccccc--c-c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC------
Confidence 955444321 00100 1 1 22345888888986444444455666666554 567777774431
Q ss_pred CCCchhHHhh-------------------CCCcEEEeccch-hhhhccCcceeeeeccCcchhhHhhhcCCceeeccccc
Q 012083 333 NNPDGLVAKV-------------------ADFGKMVKWAPQ-EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGH 392 (471)
Q Consensus 333 ~lp~~~~~~~-------------------~~nv~~~~~vpq-~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 392 (471)
..+.+.+.. .+++.+..+..+ ..+++.+++ +|+-+|..| .|+..+|+|+|++|...
T Consensus 250 -~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~ 325 (396)
T TIGR03492 250 -SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKG 325 (396)
T ss_pred -CHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCC
Confidence 001111111 123455555544 478877777 999999766 99999999999999877
Q ss_pred chhhhHHHHHhhh----cceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHH
Q 012083 393 DHLYIKSCICDDW----KIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNAL 442 (471)
Q Consensus 393 DQ~~na~~v~~~~----G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 442 (471)
.|. |+...++ . |.++.+. ..+.+.|.+++.++++|++.+++..
T Consensus 326 ~q~-na~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 326 PQF-TYGFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred CHH-HHHHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 786 9877666 3 6666653 2455999999999999987665555
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=1e-15 Score=132.29 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=96.1
Q ss_pred EEEEecCccccCCHH-HHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccc-hhhhhccCcc
Q 012083 288 VIYAAFGSISKLSQQ-QFNELALGLEL--AGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAP-QEKVLAHPSV 363 (471)
Q Consensus 288 vv~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vp-q~~lL~~~~~ 363 (471)
+|+|+.||.....-. .+..+...+.. ...++++.+++. ........ ......|+.+.+|++ ...+++.+++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~----~~~~~~~~-~~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN----NYEELKIK-VENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC----ECHHHCCC-HCCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC----cHHHHHHH-HhccCCcEEEEechhhHHHHHHHcCE
Confidence 489999985432111 12223333332 257888888755 11111111 111136889999999 5689977776
Q ss_pred eeeeeccCcchhhHhhhcCCceeeccccc----chhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHH
Q 012083 364 ACYLTHCGWNSTMEGISMGVPFLCWPWGH----DHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVR 438 (471)
Q Consensus 364 ~~~ItHgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~ 438 (471)
+|||||.||++|++++|+|+|++|... +|..||..+++ .|+|..+.. ...+.+.|.++|.+++.++...
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~~~~~~ 148 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLSDPEKL 148 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCCCHH-S
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHcCcHHH
Confidence 999999999999999999999999988 99999999999 699999985 6677899999999999998653
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=2.3e-10 Score=111.52 Aligned_cols=321 Identities=13% Similarity=0.057 Sum_probs=170.5
Q ss_pred cccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhh
Q 012083 28 QGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKV 107 (471)
Q Consensus 28 ~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (471)
.|+...+..|+++|+++||+|++++.......... .....+..++.. ..... .. . -.
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~-~~------~-~~ 70 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGP-------------ARVVPVPSVPLP--GYPEI-RL------A-LP 70 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCchhhccCC-------------CCceeecccccC--cccce-Ee------c-cc
Confidence 78999999999999999999999998654321110 001111111100 00000 00 0 00
Q ss_pred ccHHHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcccc
Q 012083 108 MPGYLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVI 184 (471)
Q Consensus 108 ~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 184 (471)
....+...++. .+||+|++..... .+..++...++|++.............
T Consensus 71 ~~~~~~~~~~~-------~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------- 124 (364)
T cd03814 71 PRRRVRRLLDA-------FAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRY------------------- 124 (364)
T ss_pred chhhHHHHHHh-------cCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhh-------------------
Confidence 11123333334 8999998764432 456778889999988654322110000
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHH-hhhccCcEEEEcchhhhchhhhhhCCCcceeccccCCC
Q 012083 185 KNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIR-QNIEASDRILCTWFHELAPSANKILPSIIPVGPLIANG 263 (471)
Q Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~vGp~~~~~ 263 (471)
.. . .+ ......... ....+++.+++.+....+.......+++..+.......
T Consensus 125 ----------~~-------~-~~---------~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~ 177 (364)
T cd03814 125 ----------YG-------L-GP---------LSWLAWAYLRWFHNRADRVLVPSPSLADELRARGFRRVRLWPRGVDTE 177 (364)
T ss_pred ----------cc-------c-ch---------HhHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccCCCceeecCCCcccc
Confidence 00 0 00 000001111 12357899999888776532111223444333222111
Q ss_pred CCCCCCCcCcchhcccccCCCCCcEEEEecCcccc-CCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCCCCCCCCchhHHh
Q 012083 264 QPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISK-LSQQQFNELALGLEL-AGQPFLCGVRPGFINGSSTNNPDGLVAK 341 (471)
Q Consensus 264 ~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~~~lp~~~~~~ 341 (471)
.. .+.........-+. ..++.+++..|+... ...+.+..++..+.. .+..+++.-.+. . ...+ +.
T Consensus 178 ~~--~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~----~----~~~~-~~ 244 (364)
T cd03814 178 LF--HPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP----A----RARL-EA 244 (364)
T ss_pred cc--CcccccHHHHHHhC--CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc----h----HHHH-hc
Confidence 00 00011111111111 123466677777532 223334444444432 234444443322 0 0111 12
Q ss_pred hCCCcEEEeccchh---hhhccCcceeeeeccC----cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCC
Q 012083 342 VADFGKMVKWAPQE---KVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414 (471)
Q Consensus 342 ~~~nv~~~~~vpq~---~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 414 (471)
..+|+.+.+|+++. .+++.+++ +|+.+. .+++.||+++|+|+|+.+... +...+.+ .+.|.....
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCC-
Confidence 35789999999976 47876766 886654 478999999999999887543 5556666 488988853
Q ss_pred CCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHH
Q 012083 415 DNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQ 449 (471)
Q Consensus 415 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~ 449 (471)
-+.+++.++|.+++.|++.+++..+-+....
T Consensus 317 ----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 317 ----GDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred ----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4678899999999999876666555554443
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.46 E-value=2.2e-13 Score=113.95 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=84.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAK 99 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 99 (471)
|+|.+.|+.||++|+++||++|++|||+|++++++.+.+.+++. |+.|.+++... ..........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~--------------Gl~~~~~~~~~-~~~~~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA--------------GLEFVPIPGDS-RLPRSLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT--------------T-EEEESSSCG-GGGHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc--------------CceEEEecCCc-CcCcccchhh
Confidence 78999999999999999999999999999999999999999877 99999987660 0000001111
Q ss_pred HHHHHHhh--ccHHHHHHHHHHh-----cccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHH
Q 012083 100 MTRSISKV--MPGYLEELIQKIN-----QQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 100 ~~~~~~~~--~~~~~~~ll~~l~-----~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
.+....+. ....+.+.+.... ..+....+|+++.+.....+..+|+++|||++.....+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11111111 1111222222211 1111147888888888888999999999999998776654
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.40 E-value=1.1e-09 Score=110.76 Aligned_cols=334 Identities=14% Similarity=0.038 Sum_probs=170.3
Q ss_pred CCCcEEEEEcCCC-----cccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCC-C
Q 012083 15 KTNVHVLLVSFPA-----QGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDG-L 88 (471)
Q Consensus 15 ~~~~~Il~~~~~~-----~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 88 (471)
+++|||+++..+. .|=-..+..+++.|.++||+|++++....... . ..++....+... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~--~-------------~~g~~v~~~~~~~~ 120 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQ--E-------------FHGAKVIGSWSFPC 120 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCc--c-------------ccCceeeccCCcCC
Confidence 4679999885432 34456789999999999999999998643211 0 014433322110 0
Q ss_pred CCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHHHHHHH
Q 012083 89 EPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAPGILAMI 165 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~ 165 (471)
+... .. ...+ .....+..++++ .+||+|.+..... .+..+|...|+|+|.........
T Consensus 121 ~~~~---~~---~~~~--~~~~~l~~~i~~-------~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~---- 181 (465)
T PLN02871 121 PFYQ---KV---PLSL--ALSPRIISEVAR-------FKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPV---- 181 (465)
T ss_pred ccCC---Cc---eeec--cCCHHHHHHHHh-------CCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchh----
Confidence 0000 00 0000 011134444555 8999997654322 34557888999998854321100
Q ss_pred hchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchh
Q 012083 166 MNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPS 245 (471)
Q Consensus 166 ~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~ 245 (471)
..+.+. . ... ...+... .+ .....+|.+++.+...-+.-
T Consensus 182 -------------------------~~~~~~---~-----~~~-----~~~~~~~-~r--~~~~~ad~ii~~S~~~~~~l 220 (465)
T PLN02871 182 -------------------------YIPRYT---F-----SWL-----VKPMWDI-IR--FLHRAADLTLVTSPALGKEL 220 (465)
T ss_pred -------------------------hhhccc---c-----hhh-----HHHHHHH-HH--HHHhhCCEEEECCHHHHHHH
Confidence 000000 0 000 0000000 01 12357888888886654432
Q ss_pred hhhh---CCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCC-CCEEEE
Q 012083 246 ANKI---LPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAG-QPFLCG 321 (471)
Q Consensus 246 ~~~~---~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~ 321 (471)
.... ..++..+..-...... .+.........-+....+...+++..|++.. ...+..+++++++.. .++++
T Consensus 221 ~~~~~~~~~kv~vi~nGvd~~~f--~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i- 295 (465)
T PLN02871 221 EAAGVTAANRIRVWNKGVDSESF--HPRFRSEEMRARLSGGEPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF- 295 (465)
T ss_pred HHcCCCCcCeEEEeCCccCcccc--CCccccHHHHHHhcCCCCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-
Confidence 1111 1233322211111100 0001111111111111112245566687532 233556777776653 45444
Q ss_pred EcCCCCCCCCCCCCchhHHhh-CCCcEEEeccchh---hhhccCcceeeeeccC----cchhhHhhhcCCceeecccccc
Q 012083 322 VRPGFINGSSTNNPDGLVAKV-ADFGKMVKWAPQE---KVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGHD 393 (471)
Q Consensus 322 ~~~~~~~~~~~~lp~~~~~~~-~~nv~~~~~vpq~---~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~D 393 (471)
+++. ...+.+.+.. ..++.+.+|+|+. .+++.+++ ||.-.. .+++.||+++|+|+|+....+
T Consensus 296 vG~G-------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg- 365 (465)
T PLN02871 296 VGDG-------PYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG- 365 (465)
T ss_pred EeCC-------hHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC-
Confidence 4332 1112222211 3578888999864 47877777 775433 457889999999999875432
Q ss_pred hhhhHHHHHh---hhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 394 HLYIKSCICD---DWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 394 Q~~na~~v~~---~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
....+.. . +.|..+++ -+.+++.++|.++++|++.+++..+-+..
T Consensus 366 ---~~eiv~~~~~~-~~G~lv~~-----~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 366 ---IPDIIPPDQEG-KTGFLYTP-----GDVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred ---cHhhhhcCCCC-CceEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2223332 3 67888854 36799999999999998665554444443
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.33 E-value=9.5e-09 Score=101.91 Aligned_cols=91 Identities=20% Similarity=0.196 Sum_probs=63.3
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec-cC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH-CG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH-gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.++|.+.+++|+. .+++.+++-++.+. .| .+++.||+++|+|+|+.. .......+.. -..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~-~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITD-GENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhccc-CCceEEcCC----
Confidence 3678889999976 46767777333232 22 348999999999999864 3445555555 256777743
Q ss_pred CcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
-+.+++.++|.++++|++.+++..+
T Consensus 351 -~d~~~la~~i~~ll~~~~~~~~l~~ 375 (396)
T cd03818 351 -FDPDALAAAVIELLDDPARRARLRR 375 (396)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4689999999999999865444433
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.30 E-value=4.7e-09 Score=102.01 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=65.0
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec----c-CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH----C-GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH----g-G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 414 (471)
.+++.+.+|+++. .+++.+++ +|+. . ...++.||+++|+|+|+.+. ..+...+.. -+.|..+..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECC-
Confidence 5788899999865 46877776 6632 3 34479999999999998754 345556666 367888854
Q ss_pred CCCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 415 DNGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 415 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
-+.+++.+++.++++|++.++++.+
T Consensus 314 ----~d~~~l~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03823 314 ----GDAEDLAAALERLIDDPDLLERLRA 338 (359)
T ss_pred ----CCHHHHHHHHHHHHhChHHHHHHHH
Confidence 3579999999999998865555444
No 49
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.29 E-value=5.5e-10 Score=109.46 Aligned_cols=346 Identities=13% Similarity=0.064 Sum_probs=176.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
|||+++. +++.|+.-+.+|.++|.++ +.++.++.+....+........ + ++.. .++-.+.. ....
T Consensus 1 ~~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-~---------~i~~-~~~~~~~~--~~~~ 66 (365)
T TIGR00236 1 LKVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-F---------HLPP-DYDLNIMS--PGQT 66 (365)
T ss_pred CeEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-c---------CCCC-CeeeecCC--CCCC
Confidence 4888776 8999999999999999986 5666666665544433332111 1 3321 01001111 1222
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC--Cc-chHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhh
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV--TF-GWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIE 173 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~--~~-~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~ 173 (471)
..+.... +...+.+++++ .+||+|++-. .. .++..+|..+|||++.+....-+
T Consensus 67 ~~~~~~~----~~~~l~~~l~~-------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s------------- 122 (365)
T TIGR00236 67 LGEITSN----MLEGLEELLLE-------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRT------------- 122 (365)
T ss_pred HHHHHHH----HHHHHHHHHHH-------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCc-------------
Confidence 2222222 12345566666 8999999853 22 36788999999999865321100
Q ss_pred hCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhh-hh-CC
Q 012083 174 AGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSAN-KI-LP 251 (471)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~-~~-~~ 251 (471)
...+. .++ ....+..+. ..++.+++.+...-+.-.. .. +.
T Consensus 123 ------------------~~~~~-----~~~---------~~~~r~~~~------~~ad~~~~~s~~~~~~l~~~G~~~~ 164 (365)
T TIGR00236 123 ------------------GDRYS-----PMP---------EEINRQLTG------HIADLHFAPTEQAKDNLLRENVKAD 164 (365)
T ss_pred ------------------CCCCC-----CCc---------cHHHHHHHH------HHHHhccCCCHHHHHHHHHcCCCcc
Confidence 00000 000 000000000 1234444444333221101 11 12
Q ss_pred CcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCC
Q 012083 252 SIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPGF 326 (471)
Q Consensus 252 ~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~ 326 (471)
+++.+|-...+............++.+-+. .+++.|+++++-.... ...+..+++++.++ +.++++...++
T Consensus 165 ~I~vign~~~d~~~~~~~~~~~~~~~~~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~- 240 (365)
T TIGR00236 165 SIFVTGNTVIDALLTNVEIAYSSPVLSEFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN- 240 (365)
T ss_pred cEEEeCChHHHHHHHHHhhccchhHHHhcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC-
Confidence 456666443211000000000111112122 1234677665432111 13466677776553 34566554432
Q ss_pred CCCCCCCCCchhHHh--hCCCcEEEeccchh---hhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHH
Q 012083 327 INGSSTNNPDGLVAK--VADFGKMVKWAPQE---KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCI 401 (471)
Q Consensus 327 ~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~---~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 401 (471)
......+.+. ..+++++.+.+++. .+++++++ +|+..|.. +.||+++|+|+|.++...+++. +
T Consensus 241 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~ 308 (365)
T TIGR00236 241 -----PVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----T 308 (365)
T ss_pred -----hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----H
Confidence 0011112221 23578888766654 56766665 89877644 7999999999999876555542 3
Q ss_pred HhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012083 402 CDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFI 466 (471)
Q Consensus 402 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 466 (471)
.+ .|.+..+. -+.++|.+++.++++|++.+++...-...+ .+|+++.+.++.+.
T Consensus 309 ~~-~g~~~lv~------~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~----g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 309 VE-AGTNKLVG------TDKENITKAAKRLLTDPDEYKKMSNASNPY----GDGEASERIVEELL 362 (365)
T ss_pred Hh-cCceEEeC------CCHHHHHHHHHHHHhChHHHHHhhhcCCCC----cCchHHHHHHHHHH
Confidence 34 37776653 278999999999999987776655433222 23555555554443
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.27 E-value=2.4e-09 Score=105.07 Aligned_cols=350 Identities=17% Similarity=0.045 Sum_probs=175.4
Q ss_pred EEEEEcCCC----cccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc
Q 012083 19 HVLLVSFPA----QGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR 94 (471)
Q Consensus 19 ~Il~~~~~~----~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (471)
||+|++... .|+-..+..+++.|+++||+|++++.............. ......++.+..++.......
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-- 73 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGY-----KREEVDGVRVHRVPLPPYKKN-- 73 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccc-----eEEecCCeEEEEEecCCCCcc--
Confidence 566666442 589999999999999999999999876544332210000 000123666655543222111
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc----hHHHHHHHcCCceEEEeCchHHHHHHHhchhh
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG----WALQVAAKLELKKASIYTSAPGILAMIMNIPK 170 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 170 (471)
..+...... ..........+.. .. .+||+|++..... .+..++...++|++.............
T Consensus 74 ~~~~~~~~~-~~~~~~~~~~~~~--~~----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~----- 141 (394)
T cd03794 74 GLLKRLLNY-LSFALSALLALLK--RR----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVA----- 141 (394)
T ss_pred chHHHHHhh-hHHHHHHHHHHHh--cc----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHH-----
Confidence 111111111 1111111111111 12 8999999996222 334556667999988643211100000
Q ss_pred hhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHH-hhhccCcEEEEcchhhhchhh-hh
Q 012083 171 FIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIR-QNIEASDRILCTWFHELAPSA-NK 248 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~-~~ 248 (471)
. ..... ............ ..+..++.+++.+....+.-. ..
T Consensus 142 ---~-------------------------------~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~ 184 (394)
T cd03794 142 ---L-------------------------------GLLKN---GSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRG 184 (394)
T ss_pred ---c-------------------------------cCccc---cchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcC
Confidence 0 00000 000011111111 124678998888876655431 11
Q ss_pred h-CCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCcccc-CCHHHHHHHHHHHHhC-CCCEEEEEcCC
Q 012083 249 I-LPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISK-LSQQQFNELALGLELA-GQPFLCGVRPG 325 (471)
Q Consensus 249 ~-~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~ 325 (471)
. ..++..+......... ............. ..+++.+++..|+... ...+.+...+..+.+. +.++++ ++..
T Consensus 185 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~~ 259 (394)
T cd03794 185 VPPEKISVIPNGVDLELF--KPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGDG 259 (394)
T ss_pred CCcCceEEcCCCCCHHHc--CCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCCc
Confidence 1 2344444332221110 0000000000111 1223477777887633 2333344444444333 444443 3322
Q ss_pred CCCCCCCCCCchhH----HhhCCCcEEEeccchh---hhhccCcceeeeeccC---------cchhhHhhhcCCceeecc
Q 012083 326 FINGSSTNNPDGLV----AKVADFGKMVKWAPQE---KVLAHPSVACYLTHCG---------WNSTMEGISMGVPFLCWP 389 (471)
Q Consensus 326 ~~~~~~~~lp~~~~----~~~~~nv~~~~~vpq~---~lL~~~~~~~~ItHgG---------~~s~~eal~~GvP~l~~P 389 (471)
...+.+. ....+|+.+.+++++. .+++.+++ +|.... -+++.||+++|+|+|+.+
T Consensus 260 -------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~ 330 (394)
T cd03794 260 -------PEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASV 330 (394)
T ss_pred -------ccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEec
Confidence 1111221 1235788889999865 46766776 664322 234799999999999987
Q ss_pred cccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 390 WGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 390 ~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
....+. .+.+ .+.|..++. -+.+++.++|.+++.|++.+++..+-+.+.
T Consensus 331 ~~~~~~----~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 379 (394)
T cd03794 331 DGESAE----LVEE-AGAGLVVPP-----GDPEALAAAILELLDDPEERAEMGENGRRY 379 (394)
T ss_pred CCCchh----hhcc-CCcceEeCC-----CCHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 765443 3344 367777753 378999999999999886665554444433
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=4.7e-10 Score=99.51 Aligned_cols=296 Identities=16% Similarity=0.106 Sum_probs=184.6
Q ss_pred cEEEEEcCC----CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCC
Q 012083 18 VHVLLVSFP----AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDD 93 (471)
Q Consensus 18 ~~Il~~~~~----~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (471)
|||+|.+-+ +.||+..++.||++|.++|..++|++.+...+.+.+.. +++.+.....
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~------------~~f~~~~~~~------- 61 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY------------EGFKVLEGRG------- 61 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh------------hhccceeeec-------
Confidence 589998866 67999999999999999999999999988666443211 1222211100
Q ss_pred cccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcch---HHHHHHHcCCceEEEeCchHHHHHHHhchhh
Q 012083 94 RKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGW---ALQVAAKLELKKASIYTSAPGILAMIMNIPK 170 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~---~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 170 (471)
.. .+.+ .++|++|.|..... ...+..+.+.+.+.+-.-....+.
T Consensus 62 --------------~n-----~ik~-------~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~------- 108 (318)
T COG3980 62 --------------NN-----LIKE-------EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFK------- 108 (318)
T ss_pred --------------cc-----cccc-------ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchh-------
Confidence 00 3344 89999999988773 356777899999997543322110
Q ss_pred hhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC
Q 012083 171 FIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL 250 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 250 (471)
..++.-+.... . +....+ .+
T Consensus 109 -----------------------------d~d~ivN~~~~----------------a---------~~~y~~------v~ 128 (318)
T COG3980 109 -----------------------------DNDLIVNAILN----------------A---------NDYYGL------VP 128 (318)
T ss_pred -----------------------------hhHhhhhhhhc----------------c---------hhhccc------cC
Confidence 00000000000 0 000000 01
Q ss_pred CCc-ceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Q 012083 251 PSI-IPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFING 329 (471)
Q Consensus 251 ~~~-~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 329 (471)
.+. ++.||-...-+. ......++ .-.+ +..-|+|++|- +.+.....+++..+.+..+.+-++++..
T Consensus 129 ~k~~~~lGp~y~~lr~--eF~~~r~~----~~~r-~~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~---- 195 (318)
T COG3980 129 NKTRYYLGPGYAPLRP--EFYALREE----NTER-PKRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSS---- 195 (318)
T ss_pred cceEEEecCCceeccH--HHHHhHHH----Hhhc-chheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCC----
Confidence 111 333333222110 00000000 0111 23479999994 5555567788888988887776777632
Q ss_pred CCCCCCchhHHhh--CCCcEEEeccchh-hhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhc
Q 012083 330 SSTNNPDGLVAKV--ADFGKMVKWAPQE-KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWK 406 (471)
Q Consensus 330 ~~~~lp~~~~~~~--~~nv~~~~~vpq~-~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G 406 (471)
..-..+..++. .+|..+......+ .++..+++ .|+-||. |+.|++.-|+|.+++|+...|.--|...+. +|
T Consensus 196 --~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg 269 (318)
T COG3980 196 --NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LG 269 (318)
T ss_pred --CcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cC
Confidence 12222333332 4566666555543 68866666 9998885 899999999999999999999999999999 68
Q ss_pred ceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 407 IGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 407 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
+-..++ -.++++...-.+.++..|...|++.-.-++.+
T Consensus 270 ~~~~l~----~~l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i 307 (318)
T COG3980 270 IIKQLG----YHLKDLAKDYEILQIQKDYARRKNLSFGSKLI 307 (318)
T ss_pred chhhcc----CCCchHHHHHHHHHhhhCHHHhhhhhhcccee
Confidence 888885 34788888889999999988887776555544
No 52
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.26 E-value=5.7e-09 Score=104.49 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=65.8
Q ss_pred CcEEEeccch-hhhhccCcceeeeec-----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCC
Q 012083 345 FGKMVKWAPQ-EKVLAHPSVACYLTH-----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGI 418 (471)
Q Consensus 345 nv~~~~~vpq-~~lL~~~~~~~~ItH-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 418 (471)
++.+.+...+ ..+++.+++ ++.. +|..++.||+++|+|+|+-|...++......+.+ -|++....
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~------ 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE------ 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC------
Confidence 3444454443 357766665 3331 3444699999999999999988888877777766 37666642
Q ss_pred cCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 419 IGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 419 ~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
+.+++.+++.++++|++.+++..+-+...
T Consensus 374 -d~~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 374 -DAEDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred -CHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 67999999999999987666555544443
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.25 E-value=3e-08 Score=96.00 Aligned_cols=325 Identities=12% Similarity=0.074 Sum_probs=171.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhh-hHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICER-IKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
||++++....|+...+..++++|.+.||+|++++....... ... .++.+..++..... ...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~ 62 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA--------------LGVKVIPIPLDRRG----INP 62 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc--------------CCceEEeccccccc----cCh
Confidence 58888888888999999999999999999999998765542 221 26777666533211 111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhC
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAG 175 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 175 (471)
...+..+ ..+..+++. .+||+|++..... .+..++...+.|.+..........
T Consensus 63 ~~~~~~~-----~~~~~~~~~-------~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 117 (359)
T cd03808 63 FKDLKAL-----LRLYRLLRK-------ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV------------- 117 (359)
T ss_pred HhHHHHH-----HHHHHHHHh-------cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh-------------
Confidence 1111111 123344444 8999999875433 334445546666555432211100
Q ss_pred CCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHH-hhhccCcEEEEcchhhhchhhhhhC---C
Q 012083 176 IISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIR-QNIEASDRILCTWFHELAPSANKIL---P 251 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~l~~~~~~~~---~ 251 (471)
.. . ... ....+.... .....++.+++.+....+.-..... .
T Consensus 118 -----------------~~---------~-~~~--------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 162 (359)
T cd03808 118 -----------------FT---------S-GGL--------KRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKK 162 (359)
T ss_pred -----------------hc---------c-chh--------HHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcC
Confidence 00 0 000 011111111 1235678888888766554312111 1
Q ss_pred CcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCcccc-CCHHHHHHHHHHHHh--CCCCEEEEEcCCCCC
Q 012083 252 SIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISK-LSQQQFNELALGLEL--AGQPFLCGVRPGFIN 328 (471)
Q Consensus 252 ~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~ 328 (471)
....+.+...+.. ...+... . ..+++.+++..|+... ...+.+...+..+.+ .+.++++.-...
T Consensus 163 ~~~~~~~~~~~~~---~~~~~~~---~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~--- 229 (359)
T cd03808 163 KTVLIPGSGVDLD---RFSPSPE---P----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD--- 229 (359)
T ss_pred ceEEecCCCCChh---hcCcccc---c----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC---
Confidence 2222222222211 0000000 0 1234577888887632 233334444444443 233444433322
Q ss_pred CCCCCCCchhHHh--hCCCcEEEeccchh-hhhccCcceeeeeccC----cchhhHhhhcCCceeecccccchhhhHHHH
Q 012083 329 GSSTNNPDGLVAK--VADFGKMVKWAPQE-KVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGHDHLYIKSCI 401 (471)
Q Consensus 329 ~~~~~lp~~~~~~--~~~nv~~~~~vpq~-~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 401 (471)
............ ..+++.+.++..+. .+++.+++ +|..+. .+++.||+.+|+|+|+.+.. .+...+
T Consensus 230 -~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i 302 (359)
T cd03808 230 -EENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV 302 (359)
T ss_pred -cchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh
Confidence 000000000111 24677777775543 68877776 665433 67899999999999986543 344555
Q ss_pred HhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 402 CDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 402 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
.+ -+.|..++. -+.+++.++|.+++.|++..++..+-+.+
T Consensus 303 ~~-~~~g~~~~~-----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03808 303 ID-GVNGFLVPP-----GDAEALADAIERLIEDPELRARMGQAARK 342 (359)
T ss_pred hc-CcceEEECC-----CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 55 377887753 36799999999999998655554444333
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.25 E-value=1e-08 Score=101.51 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=168.0
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHh
Q 012083 27 AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISK 106 (471)
Q Consensus 27 ~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (471)
..|.-..+..|++.|+++||+|++++........... ....++.+..++.................
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 85 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV----------ELAPGVRVVRVPAGPAEYLPKEELWPYLD---- 85 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCcc----------ccccceEEEecccccccCCChhhcchhHH----
Confidence 3578889999999999999999999865432221101 11236676665432111100101111111
Q ss_pred hccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcccc
Q 012083 107 VMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVI 184 (471)
Q Consensus 107 ~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 184 (471)
.....++..+.... .+||+|++..... .+..++..+++|+|.........
T Consensus 86 ---~~~~~~~~~~~~~~--~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~----------------------- 137 (398)
T cd03800 86 ---EFADDLLRFLRREG--GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV----------------------- 137 (398)
T ss_pred ---HHHHHHHHHHHhcC--CCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc-----------------------
Confidence 11222333333311 2999999875433 45677889999988753311100
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh---CCCcceeccccC
Q 012083 185 KNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI---LPSIIPVGPLIA 261 (471)
Q Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~---~~~~~~vGp~~~ 261 (471)
...... . .... . ...........+..++.+++.+....+.-.... ..++..|.+...
T Consensus 138 ------~~~~~~-------~-~~~~----~--~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~ 197 (398)
T cd03800 138 ------KRRHLG-------A-ADTY----E--PARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVD 197 (398)
T ss_pred ------CCcccc-------c-cccc----c--hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCC
Confidence 000000 0 0000 0 000001112234678999888876543321111 122444433322
Q ss_pred CCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCCc
Q 012083 262 NGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPGFINGSSTNNPD 336 (471)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~lp~ 336 (471)
.... ............+.... ...+++..|+.... ..+..+++++..+ +.++++..++. ....+.
T Consensus 198 ~~~~--~~~~~~~~~~~~~~~~~-~~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~-----~~~~~~ 267 (398)
T cd03800 198 LERF--TPYGRAEARRARLLRDP-DKPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPR-----DDILAM 267 (398)
T ss_pred ccce--ecccchhhHHHhhccCC-CCcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCC-----Ccchhh
Confidence 1110 00000000001111122 23666777876321 2233344444332 34555554432 011110
Q ss_pred ------hhHHh--hCCCcEEEeccchhh---hhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHH
Q 012083 337 ------GLVAK--VADFGKMVKWAPQEK---VLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCI 401 (471)
Q Consensus 337 ------~~~~~--~~~nv~~~~~vpq~~---lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v 401 (471)
.+.+. ..+|+.+.+|+|+.+ +++.+++ +++. |-..++.||+++|+|+|+.... .....+
T Consensus 268 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i 341 (398)
T cd03800 268 DEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV 341 (398)
T ss_pred hhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc
Confidence 11111 246788899999764 5867666 7744 3246899999999999987543 345556
Q ss_pred HhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHH
Q 012083 402 CDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNAL 442 (471)
Q Consensus 402 ~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~ 442 (471)
.+ -+.|...+. -+.+++.++|.++++|++.+++..
T Consensus 342 ~~-~~~g~~~~~-----~~~~~l~~~i~~l~~~~~~~~~~~ 376 (398)
T cd03800 342 VD-GVTGLLVDP-----RDPEALAAALRRLLTDPALRRRLS 376 (398)
T ss_pred cC-CCCeEEeCC-----CCHHHHHHHHHHHHhCHHHHHHHH
Confidence 66 478888853 368999999999999875444333
No 55
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.24 E-value=1.1e-08 Score=101.91 Aligned_cols=336 Identities=13% Similarity=0.011 Sum_probs=166.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
++.+|++++....|+-..+..+|+.|+++||+|++++........+ . ....++.++.++..-.......
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~-~----------~~~~~v~~~~~~~~~~~~~~~~ 70 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE-I----------LSNPNITIHPLPPPPQRLNKLP 70 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH-H----------hcCCCEEEEECCCCccccccch
Confidence 4578888888888888899999999999999999998754321111 0 1123788887754210011111
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc-----hHHHHHHHcCCceEEEeCchHHHHHHHhchhh
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG-----WALQVAAKLELKKASIYTSAPGILAMIMNIPK 170 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~-----~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~ 170 (471)
....+...........+..++.. .+||+|++..... .+..++...++|+|..+...+... .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~~-------~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~-~------ 136 (415)
T cd03816 71 FLLFAPLKVLWQFFSLLWLLYKL-------RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI-L------ 136 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH-H------
Confidence 11111111111122222333333 7899999754221 234456678999987644321110 0
Q ss_pred hhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHh-h-hccCcEEEEcchhhhchhhh-
Q 012083 171 FIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQ-N-IEASDRILCTWFHELAPSAN- 247 (471)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~s~~~l~~~~~- 247 (471)
. . ... . ...... +..+.+ . .+.+|.+++.|...-+.-..
T Consensus 137 --~------------------------~-------~~~-~---~~~~~~-~~~~~e~~~~~~ad~ii~vS~~~~~~l~~~ 178 (415)
T cd03816 137 --A------------------------L-------KLG-E---NHPLVR-LAKWYEKLFGRLADYNLCVTKAMKEDLQQF 178 (415)
T ss_pred --h------------------------c-------ccC-C---CCHHHH-HHHHHHHHHhhcCCEeeecCHHHHHHHHhh
Confidence 0 0 000 0 000011 111111 1 35688888888765433211
Q ss_pred hh-CCCcceeccccCCCCCCCCCCcCcchhcccc----------------cCCCCCcEEEEecCccccCCHHHHHHHHHH
Q 012083 248 KI-LPSIIPVGPLIANGQPTGNFWSEDLTCLSWL----------------DKQPPGSVIYAAFGSISKLSQQQFNELALG 310 (471)
Q Consensus 248 ~~-~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l----------------~~~~~~~vv~vs~GS~~~~~~~~~~~~~~a 310 (471)
.. ..++..|.... ...- .+.+....-..+. ...+++..++++.|.+.. ...+..+++|
T Consensus 179 ~~~~~ki~vI~Ng~-~~~f--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A 253 (415)
T cd03816 179 NNWKIRATVLYDRP-PEQF--RPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDA 253 (415)
T ss_pred hccCCCeeecCCCC-HHHc--eeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHH
Confidence 11 12332221100 0000 0000000000010 011234466666676532 2223344444
Q ss_pred HHhC-----------CCCEEEEEcCCCCCCCCCCCCchhHHh---h-CCCcEEE-eccchh---hhhccCcceeeee-c-
Q 012083 311 LELA-----------GQPFLCGVRPGFINGSSTNNPDGLVAK---V-ADFGKMV-KWAPQE---KVLAHPSVACYLT-H- 369 (471)
Q Consensus 311 l~~~-----------~~~~i~~~~~~~~~~~~~~lp~~~~~~---~-~~nv~~~-~~vpq~---~lL~~~~~~~~It-H- 369 (471)
+..+ +.+++ .+|++ ...+.+.+. . -+|+.+. +|+|.. .+|+.+++ +|. +
T Consensus 254 ~~~l~~~~~~~~~~~~i~l~-ivG~G-------~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~ 323 (415)
T cd03816 254 LVAYEKSAATGPKLPKLLCI-ITGKG-------PLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHT 323 (415)
T ss_pred HHHHHHhhcccccCCCEEEE-EEecC-------ccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccc
Confidence 4332 12333 33332 111222222 1 2456555 688855 46767777 553 1
Q ss_pred -----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc---HHHHHHH
Q 012083 370 -----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN---DVVRKNA 441 (471)
Q Consensus 370 -----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~a 441 (471)
|--+++.||+++|+|+|+... ......+++ -+.|..++ +.+++.++|.++++| ++.+++.
T Consensus 324 ~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~-~~~G~lv~-------d~~~la~~i~~ll~~~~~~~~~~~m 391 (415)
T cd03816 324 SSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKH-GENGLVFG-------DSEELAEQLIDLLSNFPNRGKLNSL 391 (415)
T ss_pred cccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcC-CCCEEEEC-------CHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 123479999999999998643 345556666 36788772 689999999999998 6544333
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=1.8e-08 Score=98.96 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCCcEEEeccchh-hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+++.+.++.++. .+++.+++ +|.- |.-.++.||+++|+|+|+.. ....+..+.+ -..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~-~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKH-GETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcC-CCceEEcCC----
Confidence 4678888887753 67866666 6632 34569999999999999864 3445555565 257777643
Q ss_pred CcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
-+.+++.+++.++++|++.+++.++
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~~ 345 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFSR 345 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3678999999999998765444333
No 57
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.23 E-value=1.4e-08 Score=100.53 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=62.2
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeecc---C-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTHC---G-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+++|+. .+++.+++ ++... | ..++.||+++|+|+|+.-.. .....+.. -+.|.....
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeCC--
Confidence 5788999999976 56776776 55321 1 35789999999999987432 33344555 366777632
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
+.+++.++|.++++|++.+++..+
T Consensus 350 ----~~~~~a~~i~~l~~~~~~~~~~~~ 373 (392)
T cd03805 350 ----TPEEFAEAMLKLANDPDLADRMGA 373 (392)
T ss_pred ----CHHHHHHHHHHHHhChHHHHHHHH
Confidence 689999999999999865544433
No 58
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.23 E-value=2.5e-08 Score=97.30 Aligned_cols=83 Identities=16% Similarity=0.245 Sum_probs=61.6
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+|+.+.+++|+. .+++.+++ +|.. |..+++.||+++|+|+|+... ...+..+.+ .+.|..++.+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCCC-
Confidence 5788899999976 46877777 6633 335789999999999998653 445566666 3788888641
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVR 438 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~ 438 (471)
+. ++.+++.++++|++.+
T Consensus 330 ----~~-~~~~~i~~l~~~~~~~ 347 (374)
T cd03817 330 ----DE-ALAEALLRLLQDPELR 347 (374)
T ss_pred ----CH-HHHHHHHHHHhChHHH
Confidence 22 8999999999998643
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.20 E-value=4.7e-08 Score=94.86 Aligned_cols=326 Identities=16% Similarity=0.111 Sum_probs=173.4
Q ss_pred EEEEEcCC---C-cccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc
Q 012083 19 HVLLVSFP---A-QGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR 94 (471)
Q Consensus 19 ~Il~~~~~---~-~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (471)
||++++.. . .|+...+..+++.|.+.||+|++++............ ........ ... .
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~------------~~~~~~~~-----~~~-~ 62 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV------------GGIVVVRP-----PPL-L 62 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee------------cCcceecC-----Ccc-c
Confidence 35555433 2 6889999999999999999999999876543322110 00000000 000 0
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHH--HHHHHcCCceEEEeCchHHHHHHHhchhhhh
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWAL--QVAAKLELKKASIYTSAPGILAMIMNIPKFI 172 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~--~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~ 172 (471)
... ...........+..++.. .+||+|+......... ..+...++|++..........
T Consensus 63 -~~~--~~~~~~~~~~~~~~~~~~-------~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~---------- 122 (374)
T cd03801 63 -RVR--RLLLLLLLALRLRRLLRR-------ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGR---------- 122 (374)
T ss_pred -ccc--hhHHHHHHHHHHHHHhhh-------cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhc----------
Confidence 000 000011112223344444 8999999987766433 478889999988653322100
Q ss_pred hhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHH-HHhhhccCcEEEEcchhhhchhhhhhC-
Q 012083 173 EAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINV-IRQNIEASDRILCTWFHELAPSANKIL- 250 (471)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~s~~~l~~~~~~~~- 250 (471)
.. .. .......... .......++.+++.+....+.-.....
T Consensus 123 -----------------------~~--------~~------~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~ 165 (374)
T cd03801 123 -----------------------PG--------NE------LGLLLKLARALERRALRRADRIIAVSEATREELRELGGV 165 (374)
T ss_pred -----------------------cc--------cc------hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCC
Confidence 00 00 0001111111 122346889999888776654422222
Q ss_pred --CCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEc
Q 012083 251 --PSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVR 323 (471)
Q Consensus 251 --~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 323 (471)
.++..+......... .+.......-... ...+.+++.+|+.. ....+..+++++... +.++++. +
T Consensus 166 ~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~i~~~g~~~--~~k~~~~~i~~~~~~~~~~~~~~l~i~-G 237 (374)
T cd03801 166 PPEKITVIPNGVDTERF----RPAPRAARRRLGI-PEDEPVILFVGRLV--PRKGVDLLLEALAKLRKEYPDVRLVIV-G 237 (374)
T ss_pred CCCcEEEecCccccccc----CccchHHHhhcCC-cCCCeEEEEecchh--hhcCHHHHHHHHHHHhhhcCCeEEEEE-e
Confidence 245555433222110 0000000011111 22336667777753 222234444444332 2333333 3
Q ss_pred CCCCCCCCCCCCchhHH-----hhCCCcEEEeccchh---hhhccCcceeeee----ccCcchhhHhhhcCCceeecccc
Q 012083 324 PGFINGSSTNNPDGLVA-----KVADFGKMVKWAPQE---KVLAHPSVACYLT----HCGWNSTMEGISMGVPFLCWPWG 391 (471)
Q Consensus 324 ~~~~~~~~~~lp~~~~~-----~~~~nv~~~~~vpq~---~lL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~ 391 (471)
.. .....+.+ ...+++.+.+++++. .+++.+++ +|. -|..+++.||+++|+|+|+.+.
T Consensus 238 ~~-------~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~- 307 (374)
T cd03801 238 DG-------PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV- 307 (374)
T ss_pred Cc-------HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC-
Confidence 22 11111111 136788899999754 57877666 663 3567799999999999998765
Q ss_pred cchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 392 HDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 392 ~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
......+.+ .+.|...+. .+.+++.+++.+++.|++.+++..+-+.
T Consensus 308 ---~~~~~~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 308 ---GGIPEVVED-GETGLLVPP-----GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ---CChhHHhcC-CcceEEeCC-----CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 445666665 378888853 3589999999999999865554444433
No 60
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.18 E-value=5.1e-10 Score=109.64 Aligned_cols=136 Identities=13% Similarity=0.102 Sum_probs=86.3
Q ss_pred CcEEEEecCccccC-CHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCCchhHH---hh---CCCcEEEeccchh--
Q 012083 286 GSVIYAAFGSISKL-SQQQFNELALGLELAGQP-FLCGVRPGFINGSSTNNPDGLVA---KV---ADFGKMVKWAPQE-- 355 (471)
Q Consensus 286 ~~vv~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~lp~~~~~---~~---~~nv~~~~~vpq~-- 355 (471)
++.|++++|..... ....+..+++++...... +.+..... ......+.+ +. .+|+.+.++.++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~------~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH------PRTRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC------CChHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 45788888875443 355677788887665432 44443322 011112222 11 3677777766544
Q ss_pred -hhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 356 -KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 356 -~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
.+++.+++ ||+..| |.+.||+.+|+|+|+++.. |. +..+.+ -|++..+.. +.++|.+++.++++|
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~~------~~~~i~~~i~~ll~~ 337 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVGT------DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecCC------CHHHHHHHHHHHhcC
Confidence 45755666 999999 7788999999999998643 22 334455 377766631 578999999999998
Q ss_pred HHHHHHH
Q 012083 435 DVVRKNA 441 (471)
Q Consensus 435 ~~~~~~a 441 (471)
+..+++.
T Consensus 338 ~~~~~~~ 344 (363)
T cd03786 338 EFAYSLM 344 (363)
T ss_pred chhhhcC
Confidence 7655544
No 61
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.15 E-value=1.8e-07 Score=93.29 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=60.8
Q ss_pred CCcEEEeccchh---hhhccCcceeeeeccCc------chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCC
Q 012083 344 DFGKMVKWAPQE---KVLAHPSVACYLTHCGW------NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414 (471)
Q Consensus 344 ~nv~~~~~vpq~---~lL~~~~~~~~ItHgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 414 (471)
+|+.+.+|+|+. .+++.+++-++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|..++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-
Confidence 578889999865 47878887555555332 2368999999999998643311 11122 2 56777743
Q ss_pred CCCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 415 DNGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 415 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
-+.+++.++|.++++|++.+++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~ 382 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGT 382 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3679999999999998755444333
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.14 E-value=5.5e-08 Score=95.03 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=61.3
Q ss_pred hCCCcEEEeccc-hh---hhhccCcceeeeecc----CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecC
Q 012083 342 VADFGKMVKWAP-QE---KVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 342 ~~~nv~~~~~vp-q~---~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 413 (471)
...++.+.+|++ +. .+++.+++ +|... ..+++.||+++|+|+|+... ......+.. -+.|..++
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~-~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDH-GVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeC-CCceEEeC-
Confidence 356778889998 43 46866666 77643 35799999999999998643 233334444 25677764
Q ss_pred CCCCCcCHhHHHHHHHHHhCcHHHHHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSNDVVRKN 440 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~~~~~~~ 440 (471)
..+.+++.+++.++++|++..++
T Consensus 314 ----~~~~~~~~~~l~~l~~~~~~~~~ 336 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLADPDEREE 336 (365)
T ss_pred ----CCCHHHHHHHHHHHHhCHHHHHH
Confidence 34789999999999998864433
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.09 E-value=2.7e-07 Score=89.82 Aligned_cols=316 Identities=13% Similarity=0.048 Sum_probs=161.6
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-CCcccHHHHHHHHH
Q 012083 27 AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE-DDRKDEAKMTRSIS 105 (471)
Q Consensus 27 ~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 105 (471)
..|+...+..+++.|.+.||+|++++............ ............... ............
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL------------KGRLVGVERLPVLLPVVPLLKGPLLYLL-- 78 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc------------ccccccccccccCcchhhccccchhHHH--
Confidence 47888999999999999999999999876544332210 000000000000000 000000000111
Q ss_pred hhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcc
Q 012083 106 KVMPGYLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGI 182 (471)
Q Consensus 106 ~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 182 (471)
....+..++.. .. .+||+|++..... .+..++...++|++.........
T Consensus 79 --~~~~~~~~l~~-~~----~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--------------------- 130 (377)
T cd03798 79 --AARALLKLLKL-KR----FRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVN--------------------- 130 (377)
T ss_pred --HHHHHHHHHhc-cc----CCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhc---------------------
Confidence 11123333331 02 8999999885543 33456677888988754322110
Q ss_pred cccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhh--hCCCcceecccc
Q 012083 183 VIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANK--ILPSIIPVGPLI 260 (471)
Q Consensus 183 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~--~~~~~~~vGp~~ 260 (471)
.... .. .... ........++.+++.+...-+.-... ...++..++...
T Consensus 131 -----------~~~~--------~~---------~~~~--~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~ 180 (377)
T cd03798 131 -----------LLPR--------KR---------LLRA--LLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGV 180 (377)
T ss_pred -----------ccCc--------hh---------hHHH--HHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCc
Confidence 0000 00 0000 01122467888888887665543221 123455554333
Q ss_pred CCCCCCCCCCcCcchhcccccCCCCCcEEEEecCcccc-CCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhH
Q 012083 261 ANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISK-LSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLV 339 (471)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~ 339 (471)
..... .+....-...+.. ...+.+++..|+... ...+.+-..+..+.+.+..+.+.+.+.. . ....+.
T Consensus 181 ~~~~~----~~~~~~~~~~~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~---~---~~~~~~ 249 (377)
T cd03798 181 DTERF----SPADRAEARKLGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG---P---LREALE 249 (377)
T ss_pred CcccC----CCcchHHHHhccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC---c---chHHHH
Confidence 22110 0100000000111 123467777787543 2233333333344332223333332220 1 111111
Q ss_pred Hh-----hCCCcEEEeccchh---hhhccCcceeeee----ccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcc
Q 012083 340 AK-----VADFGKMVKWAPQE---KVLAHPSVACYLT----HCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKI 407 (471)
Q Consensus 340 ~~-----~~~nv~~~~~vpq~---~lL~~~~~~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~ 407 (471)
+. ..+|+.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....+.. .+.
T Consensus 250 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~ 322 (377)
T cd03798 250 ALAAELGLEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GEN 322 (377)
T ss_pred HHHHhcCCcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-Ccc
Confidence 11 25788889999975 56766666 552 35577899999999999986543 34455666 466
Q ss_pred eeeecCCCCCCcCHhHHHHHHHHHhCcHHH
Q 012083 408 GLWLEPDDNGIIGRHEIKRKVDELLSNDVV 437 (471)
Q Consensus 408 G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 437 (471)
|...+. -+.+++.+++.++++++..
T Consensus 323 g~~~~~-----~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 323 GLLVPP-----GDPEALAEAILRLLADPWL 347 (377)
T ss_pred eeEECC-----CCHHHHHHHHHHHhcCcHH
Confidence 777743 4789999999999999874
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.07 E-value=2.7e-07 Score=88.86 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=65.8
Q ss_pred CCCcEEEeccch-hhhhccCcceeeeecc----CcchhhHhhhcCCceeecccccchhhhHHHHHhhhc-ceeeecCCCC
Q 012083 343 ADFGKMVKWAPQ-EKVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWK-IGLWLEPDDN 416 (471)
Q Consensus 343 ~~nv~~~~~vpq-~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~ 416 (471)
..++.+.++... ..+++.+++ +|... .-+++.||+++|+|+|+.+....+ ..+.+ -| .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCC---
Confidence 456666676443 368876666 66554 257899999999999987544333 23344 25 7887753
Q ss_pred CCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 012083 417 GIIGRHEIKRKVDELLSNDVVRKNALKLKELAQK 450 (471)
Q Consensus 417 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~ 450 (471)
-+.+++.++|.++++|++.+++..+-+..+.+
T Consensus 304 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 335 (348)
T cd03820 304 --GDVEALAEALLRLMEDEELRKRMGANARESAE 335 (348)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 46799999999999999877666665544443
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=9.5e-08 Score=93.04 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=86.2
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCCchhHH-----hhCCCcEEEeccchh---hh
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLELAG-QPFLCGVRPGFINGSSTNNPDGLVA-----KVADFGKMVKWAPQE---KV 357 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~lp~~~~~-----~~~~nv~~~~~vpq~---~l 357 (471)
..+++..|+... ...+..+++++.+.. .++++.-.+. ....+.+ ...+||.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~--------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGP--------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCCh--------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 366677777532 234556777777666 4444443221 1111111 135789999999975 57
Q ss_pred hccCcceeeee---ccC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhC
Q 012083 358 LAHPSVACYLT---HCG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 358 L~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 433 (471)
++.+++-++.+ +.| ..++.||+++|+|+|+............ .. +.|...+. -+.+++.++|.++++
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-----~d~~~~~~~i~~l~~ 331 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-----GDPAALAEAIRRLLE 331 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-----CCHHHHHHHHHHHHH
Confidence 76677633333 234 3479999999999999765544432222 22 67777743 378999999999999
Q ss_pred cHHHHHHHHHH
Q 012083 434 NDVVRKNALKL 444 (471)
Q Consensus 434 ~~~~~~~a~~l 444 (471)
|++.+++.++-
T Consensus 332 ~~~~~~~~~~~ 342 (357)
T cd03795 332 DPELRERLGEA 342 (357)
T ss_pred CHHHHHHHHHH
Confidence 98655444433
No 66
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.07 E-value=4e-07 Score=90.59 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCcEEEeccchh---hhhccCcceeeee---c-cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLT---H-CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+++|+. .+++.+++ +|. + |...++.||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCC--
Confidence 4678899999864 57877776 653 2 3345899999999999987543 34445555 367877743
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
-+.+++.++|.++++|++.++++.+-+..
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 37799999999999998665555444443
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.03 E-value=6.9e-07 Score=87.07 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=63.1
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeecc----CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+|+++. .+++.+++ +|.-. -.+++.||+++|+|+|+.+.. .....+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 5788889999964 45777776 55432 256899999999999997543 23333333 67776642
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
+.+++.++|.++++|++.+++..+-+.+.
T Consensus 331 ----~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34999999999999975555444444443
No 68
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.02 E-value=3.2e-07 Score=86.96 Aligned_cols=300 Identities=13% Similarity=0.065 Sum_probs=156.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI--CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
|||+|--.. .-|+.-+-.+.++|.++||+|.+.+-... .+.+... |+.+..+..- ..
T Consensus 1 MkIwiDi~~-p~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~y--------------g~~y~~iG~~------g~ 59 (335)
T PF04007_consen 1 MKIWIDITH-PAHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLY--------------GIDYIVIGKH------GD 59 (335)
T ss_pred CeEEEECCC-chHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHc--------------CCCeEEEcCC------CC
Confidence 588776643 34999999999999999999999877543 2333333 8888877531 12
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAG 175 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~ 175 (471)
+....+...... ..++++.+.+ .+||++|+- .+..+..+|.-+|+|+|.+.-+..........
T Consensus 60 ~~~~Kl~~~~~R----~~~l~~~~~~----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt-------- 122 (335)
T PF04007_consen 60 SLYGKLLESIER----QYKLLKLIKK----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLT-------- 122 (335)
T ss_pred CHHHHHHHHHHH----HHHHHHHHHh----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceee--------
Confidence 333322222222 2333343333 899999964 55678889999999999987654332110000
Q ss_pred CCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEE-EcchhhhchhhhhhCCCcc
Q 012083 176 IISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRIL-CTWFHELAPSANKILPSII 254 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~l~~~~~~~~~~~~ 254 (471)
+|..... ..|. .. .. ..+.+ .-.+ +.+. ++...++-
T Consensus 123 ------~Pla~~i--~~P~------------~~-----~~---~~~~~---~G~~-~~i~~y~G~~E~a----------- 159 (335)
T PF04007_consen 123 ------LPLADVI--ITPE------------AI-----PK---EFLKR---FGAK-NQIRTYNGYKELA----------- 159 (335)
T ss_pred ------hhcCCee--ECCc------------cc-----CH---HHHHh---cCCc-CCEEEECCeeeEE-----------
Confidence 0000000 0000 00 00 00000 0001 1122 33332222
Q ss_pred eeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccc----cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Q 012083 255 PVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSIS----KLSQQQFNELALGLELAGQPFLCGVRPGFINGS 330 (471)
Q Consensus 255 ~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 330 (471)
++-|+ .++.+..+-+.. .+.+.|++=+-+.. ......+..+++.+++.+..+|+..+..
T Consensus 160 yl~~F-----------~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~----- 222 (335)
T PF04007_consen 160 YLHPF-----------KPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYE----- 222 (335)
T ss_pred eecCC-----------CCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCc-----
Confidence 11111 122222233331 23457777666542 1233456778999988887644333322
Q ss_pred CCCCCchhHHhhCCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhccee
Q 012083 331 STNNPDGLVAKVADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL 409 (471)
Q Consensus 331 ~~~lp~~~~~~~~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 409 (471)
..++.+ ++. ++.+. .-+.-..+|.++++ +|+-|| ....||...|+|.+.+ +.++-...-+.+.+ .|+
T Consensus 223 --~~~~~~-~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gl-- 290 (335)
T PF04007_consen 223 --DQRELF-EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGL-- 290 (335)
T ss_pred --chhhHH-hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCC--
Confidence 111111 111 13222 33444579988887 999888 7788999999999975 22232223344566 466
Q ss_pred eecCCCCCCcCHhHHHHHHHHHh
Q 012083 410 WLEPDDNGIIGRHEIKRKVDELL 432 (471)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~ll 432 (471)
.. ..-+.+++.+.+++.+
T Consensus 291 l~-----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 291 LY-----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred eE-----ecCCHHHHHHHHHHhh
Confidence 22 2236677777555544
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.00 E-value=9.5e-07 Score=94.27 Aligned_cols=379 Identities=11% Similarity=0.057 Sum_probs=194.1
Q ss_pred CCcEEEEEcCC---------------CcccHHHHHHHHHHHHhCC--CeEEEEeCCcchhhhHH-hhhcC--CC------
Q 012083 16 TNVHVLLVSFP---------------AQGHVASLMKLAHRLADCR--IKVTFVTTEFICERIKE-SRQLG--SF------ 69 (471)
Q Consensus 16 ~~~~Il~~~~~---------------~~GH~~p~~~La~~L~~rG--h~Vt~~~~~~~~~~~~~-~~~~~--~~------ 69 (471)
++|.|++++.. +.|+..=.+.||++|+++| |+|.++|-....+.+.. .+.+. ..
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 57888887643 2356666789999999998 89999987654322100 00000 00
Q ss_pred C-ccCCCCCCeEEEeCCCCCCCC-CCcccHHHHHHHHHhhccHHHHH----HHHHHhc-ccCCCCeeEEEECCCcc--hH
Q 012083 70 S-EMGDAQQLVRIVPLPDGLEPE-DDRKDEAKMTRSISKVMPGYLEE----LIQKINQ-QEEDEKITCVIADVTFG--WA 140 (471)
Q Consensus 70 ~-~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----ll~~l~~-~~~~~~pD~vV~D~~~~--~~ 140 (471)
. ......+|++++-+|.+.... -....++.++..|.+.+...+.+ +.+++.. .. ..||+|-+..... .+
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~--~~pDvIHaHyw~sG~aa 325 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP--VWPYVIHGHYADAGDSA 325 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC--CCCCEEEECcchHHHHH
Confidence 0 000123588888887664432 22334566666665555554433 2233211 11 3599999876544 67
Q ss_pred HHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHH
Q 012083 141 LQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQY 220 (471)
Q Consensus 141 ~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (471)
..+++.+|||+|.+..+....-.... .. .+.. ...... ... .....
T Consensus 326 ~~L~~~lgVP~V~T~HSLgr~K~~~l-----l~-------------------~g~~--~~~~~~-~~y-------~~~~R 371 (1050)
T TIGR02468 326 ALLSGALNVPMVLTGHSLGRDKLEQL-----LK-------------------QGRM--SKEEIN-STY-------KIMRR 371 (1050)
T ss_pred HHHHHhhCCCEEEECccchhhhhhhh-----cc-------------------cccc--cccccc-ccc-------chHHH
Confidence 78999999999987655322100000 00 0000 000000 000 00011
Q ss_pred HHHHHhhhccCcEEEEcchhhhchhhhhh-------------------------CCCcceeccccCCCCCCC--------
Q 012083 221 INVIRQNIEASDRILCTWFHELAPSANKI-------------------------LPSIIPVGPLIANGQPTG-------- 267 (471)
Q Consensus 221 ~~~~~~~~~~~~~~l~~s~~~l~~~~~~~-------------------------~~~~~~vGp~~~~~~~~~-------- 267 (471)
+.-....+..++.++.+|..+-+....-+ .+++..|.|-........
T Consensus 372 i~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~ 451 (1050)
T TIGR02468 372 IEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGE 451 (1050)
T ss_pred HHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccch
Confidence 11112235789999999988775321110 123333333221110000
Q ss_pred ---------C-CCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCC-----CCEEEEEcCCCCCCCCC
Q 012083 268 ---------N-FWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAG-----QPFLCGVRPGFINGSST 332 (471)
Q Consensus 268 ---------~-~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~ 332 (471)
. ..+.+.++..|+.. +++ .++++.|.+.. ...+..+++|+..+. ..+.+.++... ...
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gd---d~d 524 (1050)
T TIGR02468 452 TEGNEEHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRD---DID 524 (1050)
T ss_pred hcccccccccccchhhHHHHhhccc-CCC-cEEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCc---hhh
Confidence 0 00112345556644 333 45555676422 223455666665432 23434444320 000
Q ss_pred CCC-------c---hhHHh--hCCCcEEEeccchhh---hhccCc--ceeeeec---cC-cchhhHhhhcCCceeecccc
Q 012083 333 NNP-------D---GLVAK--VADFGKMVKWAPQEK---VLAHPS--VACYLTH---CG-WNSTMEGISMGVPFLCWPWG 391 (471)
Q Consensus 333 ~lp-------~---~~~~~--~~~nv~~~~~vpq~~---lL~~~~--~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~ 391 (471)
.+. . .+.++ +.++|.+.+++++.+ +++.++ .++||.- =| -.++.||+++|+|+|+....
T Consensus 525 ~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG 604 (1050)
T TIGR02468 525 EMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG 604 (1050)
T ss_pred hhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC
Confidence 000 0 11122 247788889988764 454342 2347764 23 45899999999999998643
Q ss_pred cchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 392 HDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 392 ~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
+ ....+.. -.-|..+++ -+.++|+++|.++++|++.+++..+-+.+
T Consensus 605 G----~~EII~~-g~nGlLVdP-----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 605 G----PVDIHRV-LDNGLLVDP-----HDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred C----cHHHhcc-CCcEEEECC-----CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 2 2233344 246777754 47899999999999998766555544433
No 70
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.97 E-value=4.8e-07 Score=88.59 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=65.7
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec----------cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhccee
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH----------CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL 409 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 409 (471)
.+++.+.+++|+. .+++.+++ +|.. |-.+++.||+++|+|+|+.+.. .++..+.+ -+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeE
Confidence 5778888999865 45877776 5542 2357899999999999987653 35566666 47888
Q ss_pred eecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 410 WLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
.++. -+.+++.++|.++++|++.+++..+
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~~~~~~~~~ 345 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADPDLRARMGA 345 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 8853 4679999999999999865544433
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.97 E-value=1.4e-07 Score=91.05 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=78.0
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHh--hCCCcEEEeccchh---hhhccCc
Q 012083 288 VIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAK--VADFGKMVKWAPQE---KVLAHPS 362 (471)
Q Consensus 288 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~---~lL~~~~ 362 (471)
.+.+..|... .......+++++++.+.++++.-.+. ....+.....+. ..+++.+.+++++. .+++..+
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----DPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 3445557652 22234557777887887776554432 000010111111 25788999999975 4677777
Q ss_pred ceeeee--ccC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLT--HCG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~It--HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
+-++-+ +-| ..++.||+++|+|+|+.... .+...+.. -..|..++ . .+++.+++.+++..+
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~----~---~~~l~~~l~~l~~~~ 309 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD----S---VEELAAAVARADRLD 309 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC----C---HHHHHHHHHHHhccH
Confidence 633323 233 45899999999999987543 33344444 13677663 2 899999999987654
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.93 E-value=1.3e-06 Score=85.14 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCcEEE-eccchh---hhhccCcceeeee--c----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeec
Q 012083 343 ADFGKMV-KWAPQE---KVLAHPSVACYLT--H----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLE 412 (471)
Q Consensus 343 ~~nv~~~-~~vpq~---~lL~~~~~~~~It--H----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 412 (471)
.+++.+. +|+|+. .+++.+++ +|. + |..+++.||+++|+|+|+.+... ...+.. -+.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEc
Confidence 5778877 458864 67866666 553 2 34568999999999999987544 233445 37788775
Q ss_pred CCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 413 PDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
. -+.+++.+++.++++|++.+++..+-+.
T Consensus 318 ~-----~d~~~~~~~l~~l~~~~~~~~~~~~~~~ 346 (366)
T cd03822 318 P-----GDPAALAEAIRRLLADPELAQALRARAR 346 (366)
T ss_pred C-----CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3 3579999999999999765544443333
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.92 E-value=5.6e-07 Score=86.72 Aligned_cols=319 Identities=17% Similarity=0.120 Sum_probs=162.9
Q ss_pred EEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 19 HVLLVSFP--AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 19 ~Il~~~~~--~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
||+++... ..|+-..+..++++|.+.||+|++++............ ........ ..... ....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~------------~~~~~~~~--~~~~~-~~~~ 65 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP------------SNVKLIPV--RVLKL-KSLR 65 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc------------cchhhhce--eeeec-cccc
Confidence 46666544 57888899999999999999999998866543322110 00000000 00000 0000
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCC-cc-hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhh
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVT-FG-WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEA 174 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~-~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~ 174 (471)
.. .....+.+++.. .+||+|++... .. ....++..+++|++............
T Consensus 66 ~~--------~~~~~~~~~~~~-------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------- 120 (353)
T cd03811 66 DL--------LAILRLRRLLRK-------EKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------- 120 (353)
T ss_pred ch--------hHHHHHHHHHHh-------cCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------
Confidence 00 011224455555 89999999876 22 23334444478988865433221000
Q ss_pred CCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC---C
Q 012083 175 GIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL---P 251 (471)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~---~ 251 (471)
... . .. .........++.+++.+....+.-..... .
T Consensus 121 -------------------------------~~~-----~---~~--~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 121 -------------------------------RKL-----R---LL--LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred -------------------------------cch-----h---HH--HHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 000 0 00 11122246778888777665443312222 3
Q ss_pred CcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCCC
Q 012083 252 SIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPGF 326 (471)
Q Consensus 252 ~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~ 326 (471)
++..+......... .+.... .......+++.+++..|+... ...+..+++++..+ +.++++.-.+.
T Consensus 160 ~~~vi~~~~~~~~~----~~~~~~--~~~~~~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~- 230 (353)
T cd03811 160 KIEVIYNPIDIEEI----RALAEE--PLELGIPPDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGP- 230 (353)
T ss_pred ccEEecCCcChhhc----Ccccch--hhhcCCCCCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCc-
Confidence 44555433322110 000000 000011223477777887642 22233444444332 33444432221
Q ss_pred CCCCCCCCCchhHHh--hCCCcEEEeccchh-hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHH
Q 012083 327 INGSSTNNPDGLVAK--VADFGKMVKWAPQE-KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKS 399 (471)
Q Consensus 327 ~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~-~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 399 (471)
....+ ....++ ..+++.+.++.+.. .+++.+++ +|.- |..+++.||+++|+|+|+.... ....
T Consensus 231 ---~~~~~-~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e 300 (353)
T cd03811 231 ---LREEL-EALAKELGLADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPRE 300 (353)
T ss_pred ---cHHHH-HHHHHhcCCCccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHH
Confidence 00000 011111 24678888887754 68877776 5532 3457899999999999986443 5556
Q ss_pred HHHhhhcceeeecCCCCCCcCHhHH---HHHHHHHhCcHHHHHHHHH
Q 012083 400 CICDDWKIGLWLEPDDNGIIGRHEI---KRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 400 ~v~~~~G~G~~~~~~~~~~~~~~~l---~~~i~~ll~~~~~~~~a~~ 443 (471)
.+.+ -+.|...+. -+.+.+ .+++..++.+++.+++++.
T Consensus 301 ~i~~-~~~g~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 301 ILED-GENGLLVPV-----GDEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred HhcC-CCceEEECC-----CCHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 6677 478888854 355566 7778888888765555555
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.91 E-value=2e-06 Score=85.42 Aligned_cols=79 Identities=23% Similarity=0.263 Sum_probs=54.5
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec---cCc-chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH---CGW-NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+|+|+. .+++.+++ +|.- -|. .++.||+++|+|+|+.+..+ ....+.+ |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 4678889999864 57766776 6542 243 49999999999999876542 2233333 4443332
Q ss_pred CCCcCHhHHHHHHHHHhCcH
Q 012083 416 NGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~ 435 (471)
. +.+++.+++.+++.+.
T Consensus 318 -~--~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 318 -P--DVESIVRKLEEAISIL 334 (398)
T ss_pred -C--CHHHHHHHHHHHHhCh
Confidence 2 6799999999999864
No 75
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.89 E-value=4.6e-06 Score=83.82 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=61.7
Q ss_pred CCCcEEEeccchhhh---hccC--cceeeeecc---C-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecC
Q 012083 343 ADFGKMVKWAPQEKV---LAHP--SVACYLTHC---G-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~vpq~~l---L~~~--~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 413 (471)
.++|.+.+++++.++ ++.+ ++++||... | -.+++||+++|+|+|+... ......+.. -..|..+++
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~-~~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIAN-CRNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcC-CCcEEEeCC
Confidence 577888888887643 5433 224477643 3 4699999999999998854 334444555 246877754
Q ss_pred CCCCCcCHhHHHHHHHHHhCcHHHHHHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSNDVVRKNA 441 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a 441 (471)
-+.+++.++|.++++|++.+++.
T Consensus 391 -----~d~~~la~~i~~ll~~~~~~~~~ 413 (439)
T TIGR02472 391 -----LDLEAIASALEDALSDSSQWQLW 413 (439)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHH
Confidence 47799999999999998654443
No 76
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.88 E-value=3.4e-07 Score=87.52 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=88.6
Q ss_pred CcEEEEecCccccCCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCCchhHHhhCC--CcEEEeccchhhhhccCc
Q 012083 286 GSVIYAAFGSISKLSQQQFNELALGLELAGQP-FLCGVRPGFINGSSTNNPDGLVAKVAD--FGKMVKWAPQEKVLAHPS 362 (471)
Q Consensus 286 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~lp~~~~~~~~~--nv~~~~~vpq~~lL~~~~ 362 (471)
+++|.+--||..+--...+..+.++...+..+ ..+.+... ... +.+.+...+ .+.+.+ .-.++++.++
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a------~~~-~~i~~~~~~~~~~~~~~--~~~~~m~~aD 237 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF------FKG-KDLKEIYGDISEFEISY--DTHKALLEAE 237 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC------CcH-HHHHHHHhcCCCcEEec--cHHHHHHhhh
Confidence 35899999996443334455455555444322 22222221 001 222222221 222332 2246887677
Q ss_pred ceeeeeccCcchhhHhhhcCCceeeccc--ccchhhhHHHHH---hhhcceeeecC---------C-CCCCcCHhHHHHH
Q 012083 363 VACYLTHCGWNSTMEGISMGVPFLCWPW--GHDHLYIKSCIC---DDWKIGLWLEP---------D-DNGIIGRHEIKRK 427 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~~v~---~~~G~G~~~~~---------~-~~~~~~~~~l~~~ 427 (471)
+ +|+-+|..|+ |+..+|+||++ ++ ..-|..||+++. . .|+.-.+.. + ..+..|++.|.++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 6 9999999999 99999999988 55 346889999999 6 476665521 0 1366899999999
Q ss_pred HHHHhCcHHHHHHHHHHHHHHHHHh
Q 012083 428 VDELLSNDVVRKNALKLKELAQKSV 452 (471)
Q Consensus 428 i~~ll~~~~~~~~a~~l~~~~~~~~ 452 (471)
+.+ + .+++.++..+.+++..
T Consensus 313 i~~-~----~~~~~~~~~~~l~~~l 332 (347)
T PRK14089 313 YKE-M----DREKFFKKSKELREYL 332 (347)
T ss_pred HHH-H----HHHHHHHHHHHHHHHh
Confidence 988 2 3444555555555443
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.87 E-value=9.7e-07 Score=86.31 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=78.7
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCCchhHHh--hCCCcEEEeccch--h---hhh
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLELAGQPF-LCGVRPGFINGSSTNNPDGLVAK--VADFGKMVKWAPQ--E---KVL 358 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~lp~~~~~~--~~~nv~~~~~vpq--~---~lL 358 (471)
+.+++..|.+.......+..+++++.+....+ ++.++... ..+.+ ....+. .++++.+.+|+++ . ..+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---~~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~ 255 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---DFEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQKI 255 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---cHHHH-HHHHHHcCCCCeEEEecccCCcHHHHHHHH
Confidence 35667777764323334566777776553332 23333220 00111 111111 2578888898854 2 234
Q ss_pred ccCcceeeeec----cCcchhhHhhhcCCceeecc-cccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhC
Q 012083 359 AHPSVACYLTH----CGWNSTMEGISMGVPFLCWP-WGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 359 ~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 433 (471)
+..++ +|.. |--+++.||+++|+|+|+.- ..+ ....+.. -..|..+++ -+.+++.++|.++++
T Consensus 256 ~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~-----~d~~~la~~i~~l~~ 323 (359)
T PRK09922 256 KNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTP-----GNIDEFVGKLNKVIS 323 (359)
T ss_pred hcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECC-----CCHHHHHHHHHHHHh
Confidence 33444 6643 33679999999999999874 322 2234444 256777743 488999999999999
Q ss_pred cHH
Q 012083 434 NDV 436 (471)
Q Consensus 434 ~~~ 436 (471)
|++
T Consensus 324 ~~~ 326 (359)
T PRK09922 324 GEV 326 (359)
T ss_pred Ccc
Confidence 986
No 78
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.86 E-value=3.9e-06 Score=81.75 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=60.6
Q ss_pred CCCcEEEeccch-hhhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQ-EKVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq-~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+++.+.++..+ ..+++.+++ +|.- |-.++++||+++|+|+|+....+ ....+.. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC----
Confidence 467888887544 368876766 5543 45679999999999999875443 3333333 45555432
Q ss_pred CcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
-+.+++.++|.++++|++.+++...
T Consensus 316 -~~~~~~a~~i~~l~~~~~~~~~~~~ 340 (358)
T cd03812 316 -ESPEIWAEEILKLKSEDRRERSSES 340 (358)
T ss_pred -CCHHHHHHHHHHHHhCcchhhhhhh
Confidence 2579999999999999876655433
No 79
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.86 E-value=1.1e-05 Score=78.54 Aligned_cols=308 Identities=14% Similarity=0.061 Sum_probs=156.3
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCcchh-hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHH
Q 012083 27 AQGHVASLMKLAHRLADCRIKVTFVTTEFICE-RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSIS 105 (471)
Q Consensus 27 ~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (471)
..|--..+..||++|+++||+|++++...... ..... +++++.++..- ......+..
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~--------------~~~~~~~~~~~------~~~~~~~~~-- 66 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEAE--------------GSRHIKLPFIS------KNPLRILLN-- 66 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHhc--------------CCeEEEccccc------cchhhhHHH--
Confidence 46677778999999999999999998754322 22222 66666553211 011111111
Q ss_pred hhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCccc
Q 012083 106 KVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIV 183 (471)
Q Consensus 106 ~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 183 (471)
...+..++.+ .+||+|++..... .+..++..+++|++..........
T Consensus 67 ---~~~l~~~~~~-------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~--------------------- 115 (355)
T cd03819 67 ---VARLRRLIRE-------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVN--------------------- 115 (355)
T ss_pred ---HHHHHHHHHH-------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhH---------------------
Confidence 1123334444 8999999876433 344566788999887543221100
Q ss_pred ccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh--C-CCcceecccc
Q 012083 184 IKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI--L-PSIIPVGPLI 260 (471)
Q Consensus 184 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~--~-~~~~~vGp~~ 260 (471)
. ... ....+++.+++.+....+.-...+ + .++..++.-.
T Consensus 116 ----------------------~----------~~~------~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi 157 (355)
T cd03819 116 ----------------------F----------RYN------AIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGV 157 (355)
T ss_pred ----------------------H----------HHH------HHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCc
Confidence 0 000 112356777776654443321111 1 2344443222
Q ss_pred CCCCCCCCCCcCcch---hcccccCCCCCcEEEEecCcccc-CCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCC
Q 012083 261 ANGQPTGNFWSEDLT---CLSWLDKQPPGSVIYAAFGSISK-LSQQQFNELALGLELA--GQPFLCGVRPGFINGSSTNN 334 (471)
Q Consensus 261 ~~~~~~~~~~~~~~~---l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~l 334 (471)
...... .......+ +.+-+.. ++...+++..|+... ...+.+...+..+.+. +.+++++-.+. ....+
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~----~~~~~ 231 (355)
T cd03819 158 DLDRFD-PGAVPPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQ----GRRFY 231 (355)
T ss_pred cccccC-ccccchHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCc----ccchH
Confidence 111100 00000000 0011111 223466777777643 2344455555555543 33444333222 00111
Q ss_pred Cchh---HH--hhCCCcEEEeccch-hhhhccCcceeeeec--cC-cchhhHhhhcCCceeecccccchhhhHHHHHhhh
Q 012083 335 PDGL---VA--KVADFGKMVKWAPQ-EKVLAHPSVACYLTH--CG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDW 405 (471)
Q Consensus 335 p~~~---~~--~~~~nv~~~~~vpq-~~lL~~~~~~~~ItH--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 405 (471)
...+ .+ ...+++.+.+|... ..+++.+++-++-++ -| .++++||+++|+|+|+... ......+.. -
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~-~ 306 (355)
T cd03819 232 YAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRP-G 306 (355)
T ss_pred HHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhC-C
Confidence 1111 11 12467888888553 367877777333331 23 4699999999999988643 334445555 2
Q ss_pred cceeeecCCCCCCcCHhHHHHHHHHHhC-cHHHHHHH
Q 012083 406 KIGLWLEPDDNGIIGRHEIKRKVDELLS-NDVVRKNA 441 (471)
Q Consensus 406 G~G~~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~a 441 (471)
+.|..++. -+.+++.++|..++. +++.+++.
T Consensus 307 ~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~~~~~ 338 (355)
T cd03819 307 ETGLLVPP-----GDAEALAQALDQILSLLPEGRAKM 338 (355)
T ss_pred CceEEeCC-----CCHHHHHHHHHHHHhhCHHHHHHH
Confidence 57888753 478999999965554 55444333
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.84 E-value=4.8e-06 Score=80.97 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCCcEEEeccchh---hhhccCcceeeee----------ccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhccee
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLT----------HCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL 409 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~It----------HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 409 (471)
++|+.+.+++|+. .+++.+++ +|. -|.-+++.||+++|+|+|+.+... ....+.. ...|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCceE
Confidence 5788899999854 57766776 555 233578999999999999875432 2334444 24888
Q ss_pred eecCCCCCCcCHhHHHHHHHHHhCcHHHHHHH
Q 012083 410 WLEPDDNGIIGRHEIKRKVDELLSNDVVRKNA 441 (471)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a 441 (471)
.+.. -+.+++.++|.++++|+...++.
T Consensus 308 ~~~~-----~~~~~l~~~i~~~~~~~~~~~~~ 334 (355)
T cd03799 308 LVPP-----GDPEALADAIERLLDDPELRREM 334 (355)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCHHHHHHH
Confidence 8853 37899999999999998654333
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.81 E-value=1.1e-05 Score=78.85 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred EEecCccccCCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCCchhH--HhhCCCcEEEeccchh---hhhccCc
Q 012083 290 YAAFGSISKLSQQQFNELALGLELAG--QPFLCGVRPGFINGSSTNNPDGLV--AKVADFGKMVKWAPQE---KVLAHPS 362 (471)
Q Consensus 290 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~lp~~~~--~~~~~nv~~~~~vpq~---~lL~~~~ 362 (471)
++..|++.. ...+..+++++.+.. .+++++-.+. ....+-..+. ....++|.+.+++|+. .++..++
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~----~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad 269 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNAD----HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAA 269 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCC----CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCC
Confidence 445677632 223455666665554 4444333221 0111111111 1235788899999986 4565555
Q ss_pred ceeeeeccCc-----chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHH
Q 012083 363 VACYLTHCGW-----NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVV 437 (471)
Q Consensus 363 ~~~~ItHgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 437 (471)
+ ++.+.-. +++.||+++|+|+|+..... +...+.. -|..... . +.+.+++.++++|++.
T Consensus 270 ~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~------~-~~l~~~i~~l~~~~~~ 333 (363)
T cd04955 270 L--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV------G-DDLASLLEELEADPEE 333 (363)
T ss_pred E--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC------c-hHHHHHHHHHHhCHHH
Confidence 5 5554433 47999999999999875432 1112222 2333332 1 1299999999999755
Q ss_pred HHHHHH
Q 012083 438 RKNALK 443 (471)
Q Consensus 438 ~~~a~~ 443 (471)
.++..+
T Consensus 334 ~~~~~~ 339 (363)
T cd04955 334 VSAMAK 339 (363)
T ss_pred HHHHHH
Confidence 444333
No 82
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.80 E-value=1.3e-06 Score=85.18 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=79.6
Q ss_pred CcEEEEecCcc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhh--CCCcEEEeccc---hhhh
Q 012083 286 GSVIYAAFGSI---SKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKV--ADFGKMVKWAP---QEKV 357 (471)
Q Consensus 286 ~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~nv~~~~~vp---q~~l 357 (471)
++.|++++=.. .....+.+..+++++...+..+++..+... . ....+.+.+.+.. .+|+.+.+-++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p-~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-A-GSRIINEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-C-CchHHHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 35877877543 234466788999999887766665543220 0 0001111111111 36788876555 4578
Q ss_pred hccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceee-ecCCCCCCcCHhHHHHHHHHHhCcHH
Q 012083 358 LAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLW-LEPDDNGIIGRHEIKRKVDELLSNDV 436 (471)
Q Consensus 358 L~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-~~~~~~~~~~~~~l~~~i~~ll~~~~ 436 (471)
++++++ +||.++.+- .||...|+|+|.+- +.+ .- .+ .|-.+. +. .++++|.+++++++ +++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~-~~-~g~nvl~vg------~~~~~I~~a~~~~~-~~~ 340 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KG-RL-RADSVIDVD------PDKEEIVKAIEKLL-DPA 340 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hh-hh-hcCeEEEeC------CCHHHHHHHHHHHh-ChH
Confidence 977777 999886655 99999999999874 211 11 12 133322 32 47899999999965 444
Q ss_pred H
Q 012083 437 V 437 (471)
Q Consensus 437 ~ 437 (471)
+
T Consensus 341 ~ 341 (365)
T TIGR03568 341 F 341 (365)
T ss_pred H
Confidence 3
No 83
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.80 E-value=4.6e-06 Score=81.28 Aligned_cols=93 Identities=12% Similarity=0.092 Sum_probs=61.6
Q ss_pred CCCcEEEeccch-hhhhccCcceeeeecc----CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQ-EKVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq-~~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+|+.+.++..+ ..+++.+++ +|.-. ..+++.||+++|+|+|+. |...+...+.+ .|. .+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~--~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGL--IVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-Cce--EeCC----
Confidence 467888887765 367877776 55432 257899999999999875 44455555555 244 3422
Q ss_pred CcCHhHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELL-SNDVVRKNALKLKELAQ 449 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll-~~~~~~~~a~~l~~~~~ 449 (471)
-+.+++.+++.+++ .++.+++......+.+.
T Consensus 311 -~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~ 342 (360)
T cd04951 311 -SDPEALANKIDEILKMSGEERDIIGARRERIV 342 (360)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 37789999999999 45566655554433333
No 84
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.80 E-value=2.6e-05 Score=75.63 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=55.9
Q ss_pred CCCcEEEeccch-hhhhccCcceeeeeccC----cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQ-EKVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq-~~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+++.+.+...+ ..+++.+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++.
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~---- 316 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP---- 316 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC----
Confidence 456666665544 368877776 776544 4799999999999998543 334444433 4555532
Q ss_pred CcCHhHHHHHHHHHhCcHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVR 438 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~ 438 (471)
-+.+++.++|.++++|++.+
T Consensus 317 -~~~~~l~~~i~~l~~~~~~~ 336 (365)
T cd03807 317 -GDPEALAEAIEALLADPALR 336 (365)
T ss_pred -CCHHHHHHHHHHHHhChHHH
Confidence 36789999999999987433
No 85
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.78 E-value=9.5e-06 Score=80.16 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=80.6
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCCchhHHh---h---CCCcEEE-eccchh---
Q 012083 288 VIYAAFGSISKLSQQQFNELALGLELA--GQPFLCGVRPGFINGSSTNNPDGLVAK---V---ADFGKMV-KWAPQE--- 355 (471)
Q Consensus 288 vv~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~---~---~~nv~~~-~~vpq~--- 355 (471)
.+++..|.... ...+..+++++..+ +.++++..++. ....+-+.+.+. . .+++.+. +++++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAP----DTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCC----CcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 55666677532 22345555566544 44555544432 111111111111 1 1335544 678754
Q ss_pred hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCC-CCcCHhHHHHHHHH
Q 012083 356 KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDN-GIIGRHEIKRKVDE 430 (471)
Q Consensus 356 ~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~-~~~~~~~l~~~i~~ 430 (471)
.+++.+++ +|.- |...++.||+++|+|+|+... ......+.. -+.|..++.++. ..-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCCCCCcccchHHHHHHHHHH
Confidence 57877777 6643 334577999999999998754 345555666 367888864110 01112799999999
Q ss_pred HhCcHHHHHHHHH
Q 012083 431 LLSNDVVRKNALK 443 (471)
Q Consensus 431 ll~~~~~~~~a~~ 443 (471)
+++|++.+++..+
T Consensus 349 l~~~~~~~~~~~~ 361 (388)
T TIGR02149 349 LLADPELAKKMGI 361 (388)
T ss_pred HHhCHHHHHHHHH
Confidence 9999865544433
No 86
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.77 E-value=2.7e-05 Score=74.26 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=181.2
Q ss_pred CCcccHHHHHHHHHHHHhC--CCeEEEEe-CCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHH
Q 012083 26 PAQGHVASLMKLAHRLADC--RIKVTFVT-TEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTR 102 (471)
Q Consensus 26 ~~~GH~~p~~~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
-+.|-++-..+|.++|.++ ++.|++-+ ++...+.+.+.. .+.+....+|-+.
T Consensus 57 aSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~-----------~~~v~h~YlP~D~-------------- 111 (419)
T COG1519 57 ASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF-----------GDSVIHQYLPLDL-------------- 111 (419)
T ss_pred cchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc-----------CCCeEEEecCcCc--------------
Confidence 5789999999999999998 88988887 555666665442 1234555554321
Q ss_pred HHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH--HHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCC
Q 012083 103 SISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA--LQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSD 180 (471)
Q Consensus 103 ~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~--~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 180 (471)
...++.+++. ++||++|.-....|. ..-++..|+|.+.+..= ++
T Consensus 112 ------~~~v~rFl~~-------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------------LS-- 157 (419)
T COG1519 112 ------PIAVRRFLRK-------WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------------LS-- 157 (419)
T ss_pred ------hHHHHHHHHh-------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee-------------------ec--
Confidence 1124556777 899998866655544 55677899999996320 00
Q ss_pred cccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHh-hhccCcEEEEcchhhhchhhhhh-CCCcceecc
Q 012083 181 GIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQ-NIEASDRILCTWFHELAPSANKI-LPSIIPVGP 258 (471)
Q Consensus 181 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~l~~~~~~~-~~~~~~vGp 258 (471)
+.. .+. +..+....+ .+.+.+.++..+..+-+-- ..+ .+++...|-
T Consensus 158 ---------------------~rS---------~~~-y~k~~~~~~~~~~~i~li~aQse~D~~Rf-~~LGa~~v~v~GN 205 (419)
T COG1519 158 ---------------------DRS---------FAR-YAKLKFLARLLFKNIDLILAQSEEDAQRF-RSLGAKPVVVTGN 205 (419)
T ss_pred ---------------------hhh---------hHH-HHHHHHHHHHHHHhcceeeecCHHHHHHH-HhcCCcceEEecc
Confidence 000 000 111111122 2356788888876655432 122 345777887
Q ss_pred ccCCCCCCCCCCcCcc----hhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCC---
Q 012083 259 LIANGQPTGNFWSEDL----TCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAG-QPFLCGVRPGFINGS--- 330 (471)
Q Consensus 259 ~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~--- 330 (471)
+-.+... .+... .+...++.. ..+.|..+|. ....+.+.....++.+.. ...++.++...+..+
T Consensus 206 lKfd~~~----~~~~~~~~~~~r~~l~~~---r~v~iaaSTH-~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~ 277 (419)
T COG1519 206 LKFDIEP----PPQLAAELAALRRQLGGH---RPVWVAASTH-EGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVE 277 (419)
T ss_pred eeecCCC----ChhhHHHHHHHHHhcCCC---CceEEEecCC-CchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHH
Confidence 7555431 11111 222333332 2666666663 223333445555554333 233444443311100
Q ss_pred ----CCCCCchhHH-----hhCCCcEEEeccchh-hhhccCcc----eeeeeccCcchhhHhhhcCCceeecccccchhh
Q 012083 331 ----STNNPDGLVA-----KVADFGKMVKWAPQE-KVLAHPSV----ACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLY 396 (471)
Q Consensus 331 ----~~~lp~~~~~-----~~~~nv~~~~~vpq~-~lL~~~~~----~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 396 (471)
...+.-.... -...+|.+++-+--+ .++.-+++ +-++-+||+| ..|.+++|+|++.=|+..-|.+
T Consensus 278 ~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~e 356 (419)
T COG1519 278 NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSD 356 (419)
T ss_pred HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHH
Confidence 0000000000 002356666665533 34443443 1145589988 5799999999999999999999
Q ss_pred hHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 397 IKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 397 na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
-++++.++ |.|+.++ +.+.+.+++..++.|++.+++..+-+..+
T Consensus 357 i~~~l~~~-ga~~~v~-------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 357 IAERLLQA-GAGLQVE-------DADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred HHHHHHhc-CCeEEEC-------CHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999995 9999995 36888999999998876665554444444
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.73 E-value=4.5e-05 Score=79.91 Aligned_cols=92 Identities=10% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCcEEEecc-chh---hhhcc-Cc-ceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeec
Q 012083 343 ADFGKMVKWA-PQE---KVLAH-PS-VACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLE 412 (471)
Q Consensus 343 ~~nv~~~~~v-pq~---~lL~~-~~-~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 412 (471)
.++|.+.++. +.. .++.+ ++ .++||.- +--.++.||++||+|+|+.-. ...+..+... .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeC
Confidence 4677777764 322 34432 21 2336643 224589999999999998643 3455556662 5688886
Q ss_pred CCCCCCcCHhHHHHHHHHHh----CcHHHHHHHHHH
Q 012083 413 PDDNGIIGRHEIKRKVDELL----SNDVVRKNALKL 444 (471)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~ll----~~~~~~~~a~~l 444 (471)
+ -+.++++++|.+++ .|++.+++..+-
T Consensus 693 p-----~D~eaLA~aL~~ll~kll~dp~~~~~ms~~ 723 (784)
T TIGR02470 693 P-----YHGEEAAEKIVDFFEKCDEDPSYWQKISQG 723 (784)
T ss_pred C-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4 36788999988775 677655554433
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.68 E-value=1.3e-05 Score=78.01 Aligned_cols=93 Identities=12% Similarity=0.246 Sum_probs=64.3
Q ss_pred hCCCcEEEeccchh---hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCC
Q 012083 342 VADFGKMVKWAPQE---KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD 414 (471)
Q Consensus 342 ~~~nv~~~~~vpq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~ 414 (471)
..+++.+.+++|+. .+++.+++ +|.. |..+++.||+++|+|+|+..... ....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-
Confidence 46788888999875 56766776 5433 34568999999999999865421 2222222 3445532
Q ss_pred CCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 012083 415 DNGIIGRHEIKRKVDELLSNDVVRKNALKLKELA 448 (471)
Q Consensus 415 ~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~ 448 (471)
-+.+++.+++.+++.|++.+.+..+-+...
T Consensus 321 ----~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 321 ----LDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred ----CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 378999999999999998777766655543
No 89
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.68 E-value=4.1e-06 Score=79.06 Aligned_cols=350 Identities=13% Similarity=0.086 Sum_probs=184.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCCcchh-hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCR-IKVTFVTTEFICE-RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR 94 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rG-h~Vt~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (471)
++||+++. |++-.+.=+.+|.+++.+.+ .+..++.+....+ ..-......+ ++....+ .+.-....
T Consensus 3 ~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~---------~i~~pdy--~L~i~~~~ 70 (383)
T COG0381 3 MLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELF---------GIRKPDY--DLNIMKPG 70 (383)
T ss_pred ceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHh---------CCCCCCc--chhccccC
Confidence 36777665 99999999999999999987 7777776666552 2222211000 2222000 11111234
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEE--CCCcc-hHHHHHHHcCCceEEEeCchHHHHHHHhchhhh
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIA--DVTFG-WALQVAAKLELKKASIYTSAPGILAMIMNIPKF 171 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~ 171 (471)
.++.+.... +-..+.+++.+ .+||+|++ |.... +++.+|.+.+||+.-+-.+.-+....
T Consensus 71 ~tl~~~t~~----~i~~~~~vl~~-------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~------- 132 (383)
T COG0381 71 QTLGEITGN----IIEGLSKVLEE-------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY------- 132 (383)
T ss_pred CCHHHHHHH----HHHHHHHHHHh-------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCC-------
Confidence 444443333 33346677776 89999885 44433 66889999999998865433221000
Q ss_pred hhhCCCCCCcccccccccccCCCCCCCCccccC-CCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhC
Q 012083 172 IEAGIISSDGIVIKNEKIELSPYLPAASPAEFL-WNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKIL 250 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~ 250 (471)
+|.+.+ ..-...+. +.|.- .....+.+. +.-.....+++.....+|-- ....
T Consensus 133 ----------~PEE~N---------R~l~~~~S~~hfap----te~ar~nLl---~EG~~~~~IfvtGnt~iDal-~~~~ 185 (383)
T COG0381 133 ----------FPEEIN---------RRLTSHLSDLHFAP----TEIARKNLL---REGVPEKRIFVTGNTVIDAL-LNTR 185 (383)
T ss_pred ----------CcHHHH---------HHHHHHhhhhhcCC----hHHHHHHHH---HcCCCccceEEeCChHHHHH-HHHH
Confidence 000000 00000000 00000 000011110 11112223444443333321 0000
Q ss_pred CCcceeccccCCCCCCCCCCcCcchhccc-ccCCCCCcEEEEecCccccCCHHHHHHHHHHH----HhC-CCCEEEEEcC
Q 012083 251 PSIIPVGPLIANGQPTGNFWSEDLTCLSW-LDKQPPGSVIYAAFGSISKLSQQQFNELALGL----ELA-GQPFLCGVRP 324 (471)
Q Consensus 251 ~~~~~vGp~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al----~~~-~~~~i~~~~~ 324 (471)
.....+.....- +.. +++..|++++=...... +.+..+..++ +.. +..+|.-+..
T Consensus 186 -----------------~~~~~~~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~ 246 (383)
T COG0381 186 -----------------DRVLEDSKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHP 246 (383)
T ss_pred -----------------hhhccchhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 000111111110 122 22448888875544444 3445555544 444 4455555443
Q ss_pred CCCCCCCCCCCchhHHhhC--CCcEEE---eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHH
Q 012083 325 GFINGSSTNNPDGLVAKVA--DFGKMV---KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKS 399 (471)
Q Consensus 325 ~~~~~~~~~lp~~~~~~~~--~nv~~~---~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~ 399 (471)
. ....+-..++.. +|+++. +|.+...++.++.+ ++|-.|. -.-||-..|+|++++=...+++.
T Consensus 247 ~------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE--- 314 (383)
T COG0381 247 R------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE--- 314 (383)
T ss_pred C------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---
Confidence 2 111111112233 457765 78888999988877 9998875 45799999999999999999995
Q ss_pred HHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012083 400 CICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFI 466 (471)
Q Consensus 400 ~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 466 (471)
+ .++ |.-+.+. .+.+.|.+++..++++++..+|.+....-..+ |.+|.+.++.+.
T Consensus 315 ~-v~a-gt~~lvg------~~~~~i~~~~~~ll~~~~~~~~m~~~~npYgd----g~as~rIv~~l~ 369 (383)
T COG0381 315 G-VEA-GTNILVG------TDEENILDAATELLEDEEFYERMSNAKNPYGD----GNASERIVEILL 369 (383)
T ss_pred c-eec-CceEEeC------ccHHHHHHHHHHHhhChHHHHHHhcccCCCcC----cchHHHHHHHHH
Confidence 2 332 5555554 47799999999999999888877766665543 444544444433
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.67 E-value=3.5e-05 Score=76.50 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=50.8
Q ss_pred EEeccchhhhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhH
Q 012083 348 MVKWAPQEKVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHE 423 (471)
Q Consensus 348 ~~~~vpq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~ 423 (471)
+.++.....+++..++ ||.- +=.+++.||+++|+|+|+.-... + ..+.+ -+-|...+ +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~~-------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTYD-------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEecC-------CHHH
Confidence 3466666678866665 8877 34678999999999999985432 2 33333 24454442 5789
Q ss_pred HHHHHHHHhCcH
Q 012083 424 IKRKVDELLSND 435 (471)
Q Consensus 424 l~~~i~~ll~~~ 435 (471)
+.+++.++|.++
T Consensus 353 ~a~ai~~~l~~~ 364 (462)
T PLN02846 353 FVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHccC
Confidence 999999999864
No 91
>PLN02275 transferase, transferring glycosyl groups
Probab=98.65 E-value=5.3e-05 Score=74.40 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=52.4
Q ss_pred CCcEEE-eccchhh---hhccCcceeeee-c-----cC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeec
Q 012083 344 DFGKMV-KWAPQEK---VLAHPSVACYLT-H-----CG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLE 412 (471)
Q Consensus 344 ~nv~~~-~~vpq~~---lL~~~~~~~~It-H-----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~ 412 (471)
+|+.+. .|+|+.+ +|+.+++ +|. + -| -+++.||+++|+|+|+... ..+...+.+. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 556665 4788764 4877777 663 1 12 3579999999999998743 3355666663 6788873
Q ss_pred CCCCCCcCHhHHHHHHHHHh
Q 012083 413 PDDNGIIGRHEIKRKVDELL 432 (471)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~ll 432 (471)
+.+++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4789999998875
No 92
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.61 E-value=3.5e-05 Score=76.45 Aligned_cols=90 Identities=17% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCCcEEEeccchh-hhhccCcceeee--ec--cCc-chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCC
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYL--TH--CGW-NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDN 416 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~I--tH--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 416 (471)
.+++.+.+++++. .+++.+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. ... -|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 4678888999864 67877777 55 32 354 46999999999999987543321 123 26676663
Q ss_pred CCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 417 GIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 417 ~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
-+.+++.++|.++++|++.+++..+-++
T Consensus 347 --~~~~~la~ai~~ll~~~~~~~~~~~~ar 374 (397)
T TIGR03087 347 --ADPADFAAAILALLANPAEREELGQAAR 374 (397)
T ss_pred --CCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 3789999999999999865555444333
No 93
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.61 E-value=1.3e-07 Score=91.22 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=127.7
Q ss_pred ccHHHHHHHHHHhcccCCCCeeEEEE--CCCcc-hHHHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcccc
Q 012083 108 MPGYLEELIQKINQQEEDEKITCVIA--DVTFG-WALQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVI 184 (471)
Q Consensus 108 ~~~~~~~ll~~l~~~~~~~~pD~vV~--D~~~~-~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 184 (471)
+...+.+++.. .+||+||+ |-... +++.+|..++||++-+..+.-+.
T Consensus 55 ~~~~~~~~~~~-------~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~----------------------- 104 (346)
T PF02350_consen 55 AIIELADVLER-------EKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSG----------------------- 104 (346)
T ss_dssp HHHHHHHHHHH-------HT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-----------------------
T ss_pred HHHHHHHHHHh-------cCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcc-----------------------
Confidence 33446667776 79999875 44433 77899999999988865432110
Q ss_pred cccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhh--CCCcceeccccCC
Q 012083 185 KNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKI--LPSIIPVGPLIAN 262 (471)
Q Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~--~~~~~~vGp~~~~ 262 (471)
+ ...+++ +...+.... ..+++.++.+...-+.-.... +.+++.+|....+
T Consensus 105 --d---~~~g~~-----------------de~~R~~i~------~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D 156 (346)
T PF02350_consen 105 --D---RTEGMP-----------------DEINRHAID------KLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGID 156 (346)
T ss_dssp ------TTSSTT-----------------HHHHHHHHH------HH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHH
T ss_pred --c---cCCCCc-----------------hhhhhhhhh------hhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHH
Confidence 0 000001 222222222 246666666655443321111 3467777765443
Q ss_pred CCCCCCCCcCcchh--cccccCCCCCcEEEEecCccccCC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCC
Q 012083 263 GQPTGNFWSEDLTC--LSWLDKQPPGSVIYAAFGSISKLS-Q---QQFNELALGLELA-GQPFLCGVRPGFINGSSTNNP 335 (471)
Q Consensus 263 ~~~~~~~~~~~~~l--~~~l~~~~~~~vv~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp 335 (471)
.-..... .....+ ..++.. .+++.+++++=...... + ..+..+++++.+. +..+||.+... +...
T Consensus 157 ~l~~~~~-~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~------p~~~ 228 (346)
T PF02350_consen 157 ALLQNKE-EIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN------PRGS 228 (346)
T ss_dssp HHHHHHH-TTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-------HHHH
T ss_pred HHHHhHH-HHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC------chHH
Confidence 2100000 000000 012122 44679999985544444 3 3455566677655 77889888733 0001
Q ss_pred chhHHhhC--CCcEEEeccc---hhhhhccCcceeeeeccCcchhh-HhhhcCCceeecccccchhhhHHHHHhhhccee
Q 012083 336 DGLVAKVA--DFGKMVKWAP---QEKVLAHPSVACYLTHCGWNSTM-EGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL 409 (471)
Q Consensus 336 ~~~~~~~~--~nv~~~~~vp---q~~lL~~~~~~~~ItHgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 409 (471)
..+.+... +|++++.-++ ...+|+++++ +|+..| ++. ||.++|+|+|.+= |+..+-.-+.. |-.+
T Consensus 229 ~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR---~~geRqe~r~~--~~nv 299 (346)
T PF02350_consen 229 DIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIR---DSGERQEGRER--GSNV 299 (346)
T ss_dssp HHHHHHHTT-TTEEEE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECS---SS-S-HHHHHT--TSEE
T ss_pred HHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEec---CCCCCHHHHhh--cceE
Confidence 12222221 4888886665 4578988887 999999 566 9999999999992 22222222222 5555
Q ss_pred eecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 410 WLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
.+. .+.++|.+++++++++.+...+.+.
T Consensus 300 lv~------~~~~~I~~ai~~~l~~~~~~~~~~~ 327 (346)
T PF02350_consen 300 LVG------TDPEAIIQAIEKALSDKDFYRKLKN 327 (346)
T ss_dssp EET------SSHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred EeC------CCHHHHHHHHHHHHhChHHHHhhcc
Confidence 553 4889999999999988554444443
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.59 E-value=2.3e-05 Score=76.97 Aligned_cols=91 Identities=18% Similarity=0.142 Sum_probs=59.7
Q ss_pred CCCcEEEecc--chh---hhhccCcceeeeecc---C-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecC
Q 012083 343 ADFGKMVKWA--PQE---KVLAHPSVACYLTHC---G-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~v--pq~---~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 413 (471)
.+++.+.++. ++. .+++.+++ |+... | -.++.||+++|+|+|+.... .....+.. -..|...+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC-
Confidence 4667777776 432 56766666 77543 2 45999999999999987543 23334444 25566553
Q ss_pred CCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
+.+++..+|.+++.|++.+++..+-+..
T Consensus 323 ------~~~~~a~~i~~ll~~~~~~~~~~~~a~~ 350 (372)
T cd03792 323 ------TVEEAAVRILYLLRDPELRRKMGANARE 350 (372)
T ss_pred ------CcHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3467888999999998766555444433
No 95
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.59 E-value=5.5e-06 Score=80.70 Aligned_cols=137 Identities=13% Similarity=0.162 Sum_probs=89.0
Q ss_pred EEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchh---hhhccCccee
Q 012083 289 IYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQE---KVLAHPSVAC 365 (471)
Q Consensus 289 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~~ 365 (471)
.++..|++. ....+..++++++..+.++++.-.+. ..+.+.+...+||.+.+++|+. .+++.+++-+
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 345566643 22346667888887777766554332 1123333457899999999984 5787777733
Q ss_pred eeeccCc-chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH-HHHHHHHH
Q 012083 366 YLTHCGW-NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND-VVRKNALK 443 (471)
Q Consensus 366 ~ItHgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~-~~~~~a~~ 443 (471)
+-+.-|. .++.||+++|+|+|+....+ ....+.+ -+.|..+++ -+.+++.++|..+++|+ ..++++++
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~-----~~~~~la~~i~~l~~~~~~~~~~~~~ 336 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEE-----QTVESLAAAVERFEKNEDFDPQAIRA 336 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCC-----CCHHHHHHHHHHHHhCcccCHHHHHH
Confidence 3233343 46789999999999986433 3344555 367888853 36788999999999998 44444444
Q ss_pred HH
Q 012083 444 LK 445 (471)
Q Consensus 444 l~ 445 (471)
-+
T Consensus 337 ~~ 338 (351)
T cd03804 337 HA 338 (351)
T ss_pred HH
Confidence 33
No 96
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.57 E-value=0.00058 Score=67.07 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=59.2
Q ss_pred CCCcEEEeccch-hhhhccCcceeee--ec--cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQ-EKVLAHPSVACYL--TH--CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq-~~lL~~~~~~~~I--tH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+++.+.++..+ ..+++.+++ +| ++ |--+++.||+++|+|+|+... ..+...+.+ -..|..++.
T Consensus 254 ~~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~-~~~g~~~~~---- 322 (374)
T TIGR03088 254 AHLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQH-GVTGALVPP---- 322 (374)
T ss_pred cceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcC-CCceEEeCC----
Confidence 345666665543 367877777 65 33 446799999999999999754 334555555 256777743
Q ss_pred CcCHhHHHHHHHHHhCcHHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVRK 439 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~~ 439 (471)
-+.+++.+++.++++|++.++
T Consensus 323 -~d~~~la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 323 -GDAVALARALQPYVSDPAARR 343 (374)
T ss_pred -CCHHHHHHHHHHHHhCHHHHH
Confidence 467899999999999875443
No 97
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.52 E-value=0.00016 Score=71.73 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec---------cCc-chhhHhhhcCCceeecccccchhhhHHHHHhhhccee
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH---------CGW-NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL 409 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~ 409 (471)
.+++.+.+|+|+. .+++.+++ +|.- -|. ++++||+++|+|+|+.... .....+.. -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcC-CCceE
Confidence 4778889999976 47767776 6642 244 5789999999999987543 23344555 25677
Q ss_pred eecCCCCCCcCHhHHHHHHHHHhC-cHHHHHHH
Q 012083 410 WLEPDDNGIIGRHEIKRKVDELLS-NDVVRKNA 441 (471)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~i~~ll~-~~~~~~~a 441 (471)
.++. -+.+++.++|.++++ |++.+++.
T Consensus 351 lv~~-----~d~~~la~ai~~l~~~d~~~~~~~ 378 (406)
T PRK15427 351 LVPE-----NDAQALAQRLAAFSQLDTDELAPV 378 (406)
T ss_pred EeCC-----CCHHHHHHHHHHHHhCCHHHHHHH
Confidence 7753 368999999999999 87644433
No 98
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.43 E-value=0.00017 Score=71.94 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHH---hhhcceeeec
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCIC---DDWKIGLWLE 412 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~---~~~G~G~~~~ 412 (471)
.++|.+.+++|+. .+|+.+++ +|+- +=..++.||+++|+|+|+.-..+. ....+. .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 5789999999875 57877776 5532 223488999999999997643221 111222 31 466654
Q ss_pred CCCCCCcCHhHHHHHHHHHhCcH
Q 012083 413 PDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
. +.++++++|.++++++
T Consensus 377 ----~--d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ----S--TAEEYAEAIEKILSLS 393 (419)
T ss_pred ----C--CHHHHHHHHHHHHhCC
Confidence 1 7899999999999875
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.40 E-value=0.00017 Score=72.92 Aligned_cols=215 Identities=12% Similarity=0.074 Sum_probs=114.4
Q ss_pred cCcEEEEcchhhhchhhhhhCCCcceec-cccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHH
Q 012083 230 ASDRILCTWFHELAPSANKILPSIIPVG-PLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELA 308 (471)
Q Consensus 230 ~~~~~l~~s~~~l~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~ 308 (471)
..|.+++--++|-+.. ....-++.||| |+....+ ..+...+..+-+.-.+++++|-+--||-.+--...+..++
T Consensus 361 ~vD~ll~IfPFE~~~y-~~~gv~v~yVGHPL~d~i~----~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l 435 (608)
T PRK01021 361 YLDLLLLILPFEQNLF-KDSPLRTVYLGHPLVETIS----SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQV 435 (608)
T ss_pred HhhhheecCccCHHHH-HhcCCCeEEECCcHHhhcc----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 4566676666666665 44566899999 4443321 1122222233333344567999999994333333345566
Q ss_pred HHHH--hC--CCCEEEEEcCCCCCCCCCCCCchhHHhhC-C---CcEEEeccchhhhhccCcceeeeeccCcchhhHhhh
Q 012083 309 LGLE--LA--GQPFLCGVRPGFINGSSTNNPDGLVAKVA-D---FGKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGIS 380 (471)
Q Consensus 309 ~al~--~~--~~~~i~~~~~~~~~~~~~~lp~~~~~~~~-~---nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~ 380 (471)
++.+ .. +.+|++...+. ...+.+.+... . ++.++.---..++++.+++ .+.-+|. .++|+..
T Consensus 436 ~aa~~~~l~~~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL 505 (608)
T PRK01021 436 QAFLASSLASTHQLLVSSANP-------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETAL 505 (608)
T ss_pred HHHHHHHhccCeEEEEecCch-------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHH
Confidence 6665 33 34565543322 11111222121 1 1233210012478866666 7776665 4679999
Q ss_pred cCCceeeccc-ccchhhhHHHHHhhh----------cceeeecCCCC---CCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 381 MGVPFLCWPW-GHDHLYIKSCICDDW----------KIGLWLEPDDN---GIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 381 ~GvP~l~~P~-~~DQ~~na~~v~~~~----------G~G~~~~~~~~---~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
+|+||+++=- ..=-...|+++.+ . =+|..+-++-- +..|++.|.+++ ++|.|++++++.++==+
T Consensus 506 ~g~PmVV~YK~s~Lty~Iak~Lvk-i~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~ 583 (608)
T PRK01021 506 NQTPTIVTCQLRPFDTFLAKYIFK-IILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACR 583 (608)
T ss_pred hCCCEEEEEecCHHHHHHHHHHHh-ccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 9999988521 1111223344333 1 12333333212 578999999997 88888866666666555
Q ss_pred HHHHHhhcCCChHHH
Q 012083 447 LAQKSVTKEGSSSKN 461 (471)
Q Consensus 447 ~~~~~~~~gg~~~~~ 461 (471)
++++.+.+|.+.-+.
T Consensus 584 ~lr~~Lg~~~~~~~~ 598 (608)
T PRK01021 584 DLYQAMNESASTMKE 598 (608)
T ss_pred HHHHHhcCCCCCHHH
Confidence 666655445544443
No 100
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.36 E-value=0.00015 Score=70.08 Aligned_cols=216 Identities=19% Similarity=0.149 Sum_probs=120.5
Q ss_pred cCcEEEEcchhhhchhhhhhCCCcceec-cccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHH
Q 012083 230 ASDRILCTWFHELAPSANKILPSIIPVG-PLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELA 308 (471)
Q Consensus 230 ~~~~~l~~s~~~l~~~~~~~~~~~~~vG-p~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~ 308 (471)
..|.+++-.++|-++. ....-++.||| |+..... .........+.+ -.+++++|.+--||-.+--...+..++
T Consensus 133 ~~D~ll~ifPFE~~~y-~~~g~~~~~VGHPl~d~~~----~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l 206 (373)
T PF02684_consen 133 YVDHLLVIFPFEPEFY-KKHGVPVTYVGHPLLDEVK----PEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFL 206 (373)
T ss_pred HHhheeECCcccHHHH-hccCCCeEEECCcchhhhc----cCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4566777766666655 44445799999 5443322 112222222333 234466999999994332222334445
Q ss_pred HHHHh-----CCCCEEEEEcCCCCCCCCCCCCc---hhHHhhCCCcEEEec-cchhhhhccCcceeeeeccCcchhhHhh
Q 012083 309 LGLEL-----AGQPFLCGVRPGFINGSSTNNPD---GLVAKVADFGKMVKW-APQEKVLAHPSVACYLTHCGWNSTMEGI 379 (471)
Q Consensus 309 ~al~~-----~~~~~i~~~~~~~~~~~~~~lp~---~~~~~~~~nv~~~~~-vpq~~lL~~~~~~~~ItHgG~~s~~eal 379 (471)
++.+. .+.+|++.+... .... ........++.+.-. -.-.++|+.+++ .+.-.|. .|+|+.
T Consensus 207 ~aa~~l~~~~p~l~fvvp~a~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~A 276 (373)
T PF02684_consen 207 EAAKLLKKQRPDLQFVVPVAPE-------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAA 276 (373)
T ss_pred HHHHHHHHhCCCeEEEEecCCH-------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHH
Confidence 55432 234566554332 1111 111112333333322 233467766666 5555554 578999
Q ss_pred hcCCceeeccc-ccchhhhHHHHHhhhc--------ceeeecCCC-CCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHHHH
Q 012083 380 SMGVPFLCWPW-GHDHLYIKSCICDDWK--------IGLWLEPDD-NGIIGRHEIKRKVDELLSNDVVRKNALKLKELAQ 449 (471)
Q Consensus 380 ~~GvP~l~~P~-~~DQ~~na~~v~~~~G--------~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~~~ 449 (471)
.+|+|||++=- ..=....|+++.+ .. +|..+-++- .+..|++.|.+++..+|.|++.++..+...+.++
T Consensus 277 l~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 277 LLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRKKQKELFREIR 355 (373)
T ss_pred HhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999988621 1122334444433 22 111221111 3678999999999999999988888888888888
Q ss_pred HHhhcCCChHHHH
Q 012083 450 KSVTKEGSSSKNL 462 (471)
Q Consensus 450 ~~~~~gg~~~~~~ 462 (471)
+..+.|.++....
T Consensus 356 ~~~~~~~~~~~~~ 368 (373)
T PF02684_consen 356 QLLGPGASSRAAQ 368 (373)
T ss_pred HhhhhccCCHHHH
Confidence 8877777766544
No 101
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.32 E-value=0.0012 Score=69.28 Aligned_cols=93 Identities=14% Similarity=0.133 Sum_probs=62.1
Q ss_pred CCCcEEEeccchh-hhhccCcceeeee---ccC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYLT---HCG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.++|.+.+|.+.. .+++..++ ||. +.| -+++.||+.+|+|+|+.... .....+.+. ..|..+++ +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---~ 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---D 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC---C
Confidence 4778888988754 67866666 554 344 56899999999999997542 344455552 46888865 4
Q ss_pred CcCHhHHHHHHHHHh----CcHHHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELL----SNDVVRKNALKLK 445 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll----~~~~~~~~a~~l~ 445 (471)
..+.+++.+++.+++ .++.+++++++..
T Consensus 643 d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 643 TVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 445556666665554 4567777665554
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.32 E-value=3.4e-06 Score=67.80 Aligned_cols=116 Identities=13% Similarity=0.199 Sum_probs=77.8
Q ss_pred cEEEEecCccccCCHHHH-----HHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCCchhHHhhC-CCcE--EEeccch-hh
Q 012083 287 SVIYAAFGSISKLSQQQF-----NELALGLELAGQ-PFLCGVRPGFINGSSTNNPDGLVAKVA-DFGK--MVKWAPQ-EK 356 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~-----~~~~~al~~~~~-~~i~~~~~~~~~~~~~~lp~~~~~~~~-~nv~--~~~~vpq-~~ 356 (471)
..+||+-||.. ++ +.+ ....+.+.+.|. +.++..+++ ....++.+..... +... ..+|-|- .+
T Consensus 4 ~~vFVTVGtT~-Fd-~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg-----~~~~~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTTS-FD-DLISCVLSEEFLQELQKRGFTKLIIQIGRG-----QPFFGDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEecccc-HH-HHHHHHcCHHHHHHHHHcCccEEEEEecCC-----ccCCCCHHHhhcccCCeEEEEEecCccHHH
Confidence 38999999954 22 221 235566677776 667777765 1233333322221 1122 2378886 45
Q ss_pred hhccCcceeeeeccCcchhhHhhhcCCceeeccc----ccchhhhHHHHHhhhcceeeec
Q 012083 357 VLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPW----GHDHLYIKSCICDDWKIGLWLE 412 (471)
Q Consensus 357 lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~~v~~~~G~G~~~~ 412 (471)
..+.+++ +|+|+|.||++|.|..|+|.++++. -..|-.-|..+++ .|.=..-.
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ 133 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCT 133 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEee
Confidence 6655665 9999999999999999999999996 4579999999999 58665553
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.31 E-value=0.00033 Score=70.97 Aligned_cols=131 Identities=11% Similarity=0.130 Sum_probs=70.7
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHH---hCCCCEEEEEcCCCCCCCCCCCCch---hHHhhCCCcEE-Eeccchh--hh
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLE---LAGQPFLCGVRPGFINGSSTNNPDG---LVAKVADFGKM-VKWAPQE--KV 357 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~~~~lp~~---~~~~~~~nv~~-~~~vpq~--~l 357 (471)
..+++..|.+.. ...+..++++++ +.+.++++.-.+. ....+. +.++.+.++.+ .+|-... .+
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD------PELEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 356666677532 222334444443 2356666553221 011111 22233566654 3663222 56
Q ss_pred hccCcceeeeec---cCcc-hhhHhhhcCCceeeccccc--chhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHH
Q 012083 358 LAHPSVACYLTH---CGWN-STMEGISMGVPFLCWPWGH--DHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDEL 431 (471)
Q Consensus 358 L~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 431 (471)
++.+++ +|.- -|+| +.+||+++|+|.|+....+ |...+...-.+ -+-|..+++ -+.+++.++|.++
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv~~-----~d~~~la~~i~~~ 425 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVFDD-----FNAEDLLRALRRA 425 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEeCC-----CCHHHHHHHHHHH
Confidence 766776 6643 3444 8899999999999875422 22111101022 167888854 4778999999998
Q ss_pred hC
Q 012083 432 LS 433 (471)
Q Consensus 432 l~ 433 (471)
++
T Consensus 426 l~ 427 (466)
T PRK00654 426 LE 427 (466)
T ss_pred HH
Confidence 86
No 104
>PLN00142 sucrose synthase
Probab=98.27 E-value=0.0013 Score=69.38 Aligned_cols=71 Identities=13% Similarity=0.185 Sum_probs=47.1
Q ss_pred eeeec---cCcc-hhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHH----HhCcHH
Q 012083 365 CYLTH---CGWN-STMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDE----LLSNDV 436 (471)
Q Consensus 365 ~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~----ll~~~~ 436 (471)
+||.- -|.| ++.||+++|+|+|+... ......+... .-|..+++ -+.++++++|.+ ++.|++
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-----~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-----YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-----CCHHHHHHHHHHHHHHhcCCHH
Confidence 36653 4444 89999999999988644 3345555552 46888864 366777777765 457887
Q ss_pred HHHHHHHHH
Q 012083 437 VRKNALKLK 445 (471)
Q Consensus 437 ~~~~a~~l~ 445 (471)
.+++..+-+
T Consensus 739 lr~~mg~~A 747 (815)
T PLN00142 739 YWNKISDAG 747 (815)
T ss_pred HHHHHHHHH
Confidence 666555443
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.25 E-value=0.0017 Score=63.86 Aligned_cols=180 Identities=16% Similarity=0.087 Sum_probs=90.8
Q ss_pred hccCcEEEEcchhhhchhhhhhCCCcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCcccc-CCHHHHHH
Q 012083 228 IEASDRILCTWFHELAPSANKILPSIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISK-LSQQQFNE 306 (471)
Q Consensus 228 ~~~~~~~l~~s~~~l~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~-~~~~~~~~ 306 (471)
+..+|.++..|....+.- ....++++.++.-.............. .. +.+...+ ..+++..|++.. ...+.+..
T Consensus 151 ~~~ad~vi~~S~~l~~~~-~~~~~~i~~i~ngvd~~~f~~~~~~~~-~~-~~~~~~~--~~~i~y~G~l~~~~d~~ll~~ 225 (373)
T cd04950 151 LKRADLVFTTSPSLYEAK-RRLNPNVVLVPNGVDYEHFAAARDPPP-PP-ADLAALP--RPVIGYYGAIAEWLDLELLEA 225 (373)
T ss_pred HHhCCEEEECCHHHHHHH-hhCCCCEEEcccccCHHHhhcccccCC-Ch-hHHhcCC--CCEEEEEeccccccCHHHHHH
Confidence 468999988877655432 333355655543222110000000000 00 1111122 245556788753 23333333
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchh---hhhccCcceeee------eccCc-chhh
Q 012083 307 LALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQE---KVLAHPSVACYL------THCGW-NSTM 376 (471)
Q Consensus 307 ~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~---~lL~~~~~~~~I------tHgG~-~s~~ 376 (471)
++. ...+.++++.-.+. ..... ..+ ...+||.+.+++|+. ..+++.++.++- +.++. +.+.
T Consensus 226 la~--~~p~~~~vliG~~~----~~~~~-~~~--~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~ 296 (373)
T cd04950 226 LAK--ARPDWSFVLIGPVD----VSIDP-SAL--LRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLF 296 (373)
T ss_pred HHH--HCCCCEEEEECCCc----CccCh-hHh--ccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHH
Confidence 332 12345555433321 00000 010 114789999999965 467777773332 22332 4589
Q ss_pred HhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 377 EGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 377 eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
|++++|+|+|+.++ ...+.. .+ |..+.. -+.+++.++|.+++.++
T Consensus 297 EylA~G~PVVat~~-------~~~~~~-~~-~~~~~~-----~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 297 EYLAAGKPVVATPL-------PEVRRY-ED-EVVLIA-----DDPEEFVAAIEKALLED 341 (373)
T ss_pred HHhccCCCEEecCc-------HHHHhh-cC-cEEEeC-----CCHHHHHHHHHHHHhcC
Confidence 99999999998763 222233 23 333321 27899999999977554
No 106
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.25 E-value=0.00046 Score=70.57 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=52.2
Q ss_pred CcEEEeccchh-hhhccCcceeeeecc----CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCc
Q 012083 345 FGKMVKWAPQE-KVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGII 419 (471)
Q Consensus 345 nv~~~~~vpq~-~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 419 (471)
++.+.++.++. .+++..++ ||.-+ =.++++||+++|+|+|+.-..+... +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 35555666654 47866666 77532 2568999999999999986654221 222 3333332 2
Q ss_pred CHhHHHHHHHHHhCcHHH
Q 012083 420 GRHEIKRKVDELLSNDVV 437 (471)
Q Consensus 420 ~~~~l~~~i~~ll~~~~~ 437 (471)
+.+++.++|.++|.|+..
T Consensus 667 D~EafAeAI~~LLsd~~~ 684 (794)
T PLN02501 667 TSEDFVAKVKEALANEPQ 684 (794)
T ss_pred CHHHHHHHHHHHHhCchh
Confidence 679999999999998753
No 107
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.25 E-value=0.00022 Score=72.47 Aligned_cols=84 Identities=10% Similarity=0.045 Sum_probs=53.0
Q ss_pred hCCCcEEEeccchh---hhhccCcceeeeecc---Ccc-hhhHhhhcCCceeeccccc--chhhhHHHHHhhhcceeeec
Q 012083 342 VADFGKMVKWAPQE---KVLAHPSVACYLTHC---GWN-STMEGISMGVPFLCWPWGH--DHLYIKSCICDDWKIGLWLE 412 (471)
Q Consensus 342 ~~~nv~~~~~vpq~---~lL~~~~~~~~ItHg---G~~-s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~ 412 (471)
.+.++.+....+.. .+++.+++ +|.-. |.| +.+||+++|+|+|+....+ |...+...-.. -+.|..++
T Consensus 344 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~-~~~G~l~~ 420 (473)
T TIGR02095 344 YPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAE-SGTGFLFE 420 (473)
T ss_pred CCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCC-CCceEEeC
Confidence 45667666555543 47766666 66432 443 7889999999999875432 22211100012 16788885
Q ss_pred CCCCCCcCHhHHHHHHHHHhC
Q 012083 413 PDDNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 413 ~~~~~~~~~~~l~~~i~~ll~ 433 (471)
. -+.+++.++|.+++.
T Consensus 421 ~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 421 E-----YDPGALLAALSRALR 436 (473)
T ss_pred C-----CCHHHHHHHHHHHHH
Confidence 3 478899999999987
No 108
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.23 E-value=0.00063 Score=69.27 Aligned_cols=84 Identities=11% Similarity=0.005 Sum_probs=51.9
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeec---cCc-chhhHhhhcCCceeeccccc--chhhhHHHHHhhhcceeeecC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTH---CGW-NSTMEGISMGVPFLCWPWGH--DHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItH---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~~~ 413 (471)
++|+.+..-.++. .+++.+++ ++.. -|. .+.+||+++|+|+|+....+ |...+...-.+ -|.|..+++
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCC
Confidence 5677765333333 46766666 6643 122 47899999999999765432 22211111113 257888854
Q ss_pred CCCCCcCHhHHHHHHHHHhCc
Q 012083 414 DDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~ 434 (471)
-+.+++.+++.+++++
T Consensus 427 -----~~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 -----YNADALLAALRRALAL 442 (476)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 4689999999998863
No 109
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=0.00066 Score=64.29 Aligned_cols=347 Identities=15% Similarity=0.106 Sum_probs=175.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-Cccc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED-DRKD 96 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~ 96 (471)
+||.++..-..|++.- -.|.++|.++=-+|.|++-.. +..++. |++- + ++..+ ....
T Consensus 2 ~ki~i~AGE~SGDllG-a~LikaLk~~~~~~efvGvgG--~~m~ae--------------G~~s--l---~~~~elsvmG 59 (381)
T COG0763 2 LKIALSAGEASGDLLG-AGLIKALKARYPDVEFVGVGG--EKMEAE--------------GLES--L---FDMEELSVMG 59 (381)
T ss_pred ceEEEEecccchhhHH-HHHHHHHHhhCCCeEEEEecc--HHHHhc--------------cCcc--c---cCHHHHHHhh
Confidence 7899999888888764 467788887633777776632 334444 3111 1 00000 1112
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEE-ECCCcc--hHHHHHHHcC--CceEEEeCchHHHHHHHhchhhh
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVI-ADVTFG--WALQVAAKLE--LKKASIYTSAPGILAMIMNIPKF 171 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV-~D~~~~--~~~~~A~~lg--iP~v~~~~~~~~~~~~~~~~p~~ 171 (471)
+.+-+..+. ......+++++.+.. .+||++| +|...+ -...-.++.| +|.|-+..
T Consensus 60 f~EVL~~lp-~llk~~~~~~~~i~~----~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~--------------- 119 (381)
T COG0763 60 FVEVLGRLP-RLLKIRRELVRYILA----NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS--------------- 119 (381)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHh----cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC---------------
Confidence 222222211 122234555555555 8999987 565433 2233345666 88877532
Q ss_pred hhhCCCCCCcccccccccccCCCCCCCCccccCCCCCCCCCchhHHHHHHHHHHhhhccCcEEEEcchhhhchhhhhhCC
Q 012083 172 IEAGIISSDGIVIKNEKIELSPYLPAASPAEFLWNCPGNPSLQTLMFQYINVIRQNIEASDRILCTWFHELAPSANKILP 251 (471)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~ 251 (471)
|..+ .|- .+... ......|.++.--++|-++. ....-
T Consensus 120 ---------------------PsVW---------AWr--~~Ra~----------~i~~~~D~lLailPFE~~~y-~k~g~ 156 (381)
T COG0763 120 ---------------------PSVW---------AWR--PKRAV----------KIAKYVDHLLAILPFEPAFY-DKFGL 156 (381)
T ss_pred ---------------------ccee---------eec--hhhHH----------HHHHHhhHeeeecCCCHHHH-HhcCC
Confidence 1111 110 00011 11235666666666665554 23333
Q ss_pred Ccceec-cccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhC-----CCCEEEEEcCC
Q 012083 252 SIIPVG-PLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELA-----GQPFLCGVRPG 325 (471)
Q Consensus 252 ~~~~vG-p~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~ 325 (471)
+.+||| |+....+ ..+....+.+-+....+++++.+--||-.+--...+..+.++..++ +.+|++-+...
T Consensus 157 ~~~yVGHpl~d~i~----~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~ 232 (381)
T COG0763 157 PCTYVGHPLADEIP----LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA 232 (381)
T ss_pred CeEEeCChhhhhcc----ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH
Confidence 489999 4433321 2233333445555555667999999995432233333344444332 35777665433
Q ss_pred CCCCCCCCCCchhHHhhCCCc-EEEeccc-h--hhhhccCcceeeeeccCcchhhHhhhcCCceeecccccc--hhhhHH
Q 012083 326 FINGSSTNNPDGLVAKVADFG-KMVKWAP-Q--EKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHD--HLYIKS 399 (471)
Q Consensus 326 ~~~~~~~~lp~~~~~~~~~nv-~~~~~vp-q--~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D--Q~~na~ 399 (471)
....+-..+. ..+. ...-++. + ...+..+++ .+.-+|.. ++|+..+|+|||+.= -.+ -...|.
T Consensus 233 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Y-k~~~it~~iak 301 (381)
T COG0763 233 ----KYRRIIEEAL---KWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAY-KVKPITYFIAK 301 (381)
T ss_pred ----HHHHHHHHHh---hccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEE-eccHHHHHHHH
Confidence 0001111111 1111 1222222 2 235644555 66666654 579999999998762 111 111233
Q ss_pred HHHhhhc--------ceeeecCCC-CCCcCHhHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 012083 400 CICDDWK--------IGLWLEPDD-NGIIGRHEIKRKVDELLSND----VVRKNALKLKELAQKSVTKEGSSSKNLEYFI 466 (471)
Q Consensus 400 ~v~~~~G--------~G~~~~~~~-~~~~~~~~l~~~i~~ll~~~----~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~ 466 (471)
+... .. +|..+-++- ....+++.|.+++..++.|+ .+++..++|.+.++ .++++..+.+.++
T Consensus 302 ~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl 376 (381)
T COG0763 302 RLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVL 376 (381)
T ss_pred Hhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHH
Confidence 3222 12 121222110 35688999999999999998 45555555555554 3556666666555
Q ss_pred HHH
Q 012083 467 KQI 469 (471)
Q Consensus 467 ~~~ 469 (471)
+.+
T Consensus 377 ~~~ 379 (381)
T COG0763 377 ELL 379 (381)
T ss_pred HHh
Confidence 544
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.06 E-value=0.0017 Score=66.10 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred CCCcEEEeccchhhhhccCcceeeee---ccC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC--C
Q 012083 343 ADFGKMVKWAPQEKVLAHPSVACYLT---HCG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD--N 416 (471)
Q Consensus 343 ~~nv~~~~~vpq~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~--~ 416 (471)
.++|.+.++.+...+++.+++ +|. .-| ..+++||+++|+|+|+.-... .+...+.. -.-|..++.+. .
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCcccc
Confidence 466788888887788977777 664 233 468999999999999974321 23334444 24577665210 0
Q ss_pred CCcC-HhHHHHHHHHHhCcH
Q 012083 417 GIIG-RHEIKRKVDELLSND 435 (471)
Q Consensus 417 ~~~~-~~~l~~~i~~ll~~~ 435 (471)
..-+ .++++++|.++++++
T Consensus 449 d~~~~~~~la~~I~~ll~~~ 468 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSN 468 (500)
T ss_pred chhHHHHHHHHHHHHHhChH
Confidence 0112 688999999999654
No 111
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.06 E-value=0.0001 Score=72.53 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=83.9
Q ss_pred CCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhh------CCCcEEEeccchhhhh
Q 012083 285 PGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKV------ADFGKMVKWAPQEKVL 358 (471)
Q Consensus 285 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~------~~nv~~~~~vpq~~lL 358 (471)
+..++|.||.+....+++.+..-.+.|++.+...+|...... .-...+.+.. ++++.+.++.|+.+-|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA------SGEARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST------THHHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH------HHHHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 345999999999999999999999999999998898876431 0011222211 5777778888865433
Q ss_pred c-cCcceeee---eccCcchhhHhhhcCCceeecccc-cchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhC
Q 012083 359 A-HPSVACYL---THCGWNSTMEGISMGVPFLCWPWG-HDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 359 ~-~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 433 (471)
. +..+++++ ..+|.+|++|||++|||+|.+|-. .=...-|..+.. +|+.-.+-. +.++-.+..-++-+
T Consensus 357 ~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~La~ 429 (468)
T PF13844_consen 357 RRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRLAT 429 (468)
T ss_dssp HHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHHHH
T ss_pred HHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHHhC
Confidence 2 22233344 568999999999999999999953 233445556666 788887753 55666666667777
Q ss_pred cHHHHHHH
Q 012083 434 NDVVRKNA 441 (471)
Q Consensus 434 ~~~~~~~a 441 (471)
|++++++.
T Consensus 430 D~~~l~~l 437 (468)
T PF13844_consen 430 DPERLRAL 437 (468)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 87655443
No 112
>PLN02949 transferase, transferring glycosyl groups
Probab=97.98 E-value=0.026 Score=56.89 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=52.8
Q ss_pred CCCcEEEeccchh---hhhccCcceeeee---ccCcc-hhhHhhhcCCceeecccccchhhhHHHHHh-hhc-ceeeecC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLT---HCGWN-STMEGISMGVPFLCWPWGHDHLYIKSCICD-DWK-IGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~It---HgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~-~~G-~G~~~~~ 413 (471)
.++|.+.+++|+. .+|+.+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.+ .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 5789999999865 46766766 663 23333 799999999999998643200 000111 001 23222
Q ss_pred CCCCCcCHhHHHHHHHHHhCc-HHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSN-DVV 437 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~-~~~ 437 (471)
-+.++++++|.+++++ ++.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~ 426 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETE 426 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHH
Confidence 1779999999999984 443
No 113
>PLN02316 synthase/transferase
Probab=97.90 E-value=0.043 Score=59.73 Aligned_cols=84 Identities=10% Similarity=0.032 Sum_probs=51.6
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeecc---C-cchhhHhhhcCCceeeccccc--chhhh-------HHHHHhhhc
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTHC---G-WNSTMEGISMGVPFLCWPWGH--DHLYI-------KSCICDDWK 406 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~~v~~~~G 406 (471)
++++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+....+ |.... ++.... -+
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~-~~ 975 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGL-EP 975 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhcccccccccccccccc-CC
Confidence 4567666444443 57755655 77532 2 458999999999888765432 22211 110001 14
Q ss_pred ceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 407 IGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 407 ~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
-|..++ ..+++.|..+|.++|.+
T Consensus 976 tGflf~-----~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 976 NGFSFD-----GADAAGVDYALNRAISA 998 (1036)
T ss_pred ceEEeC-----CCCHHHHHHHHHHHHhh
Confidence 677774 35788999999999975
No 114
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.88 E-value=0.011 Score=60.06 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCCcEEEeccchhhhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhh----hc-ceeeecC
Q 012083 343 ADFGKMVKWAPQEKVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDD----WK-IGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~vpq~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~----~G-~G~~~~~ 413 (471)
.+||.+.+...-..+++..++ +|.. |--+++.||+++|+|+|+.. .......+.+. +| .|..+++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 478888885445578866666 5543 34568999999999999853 33333333331 12 6777743
Q ss_pred CCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSNDVVRKNALKLKE 446 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~ 446 (471)
-+.+++.++|.++++|++.++++.+-+.
T Consensus 427 -----~d~~~la~ai~~ll~~~~~~~~~~~~a~ 454 (475)
T cd03813 427 -----ADPEALARAILRLLKDPELRRAMGEAGR 454 (475)
T ss_pred -----CCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4789999999999999876555444333
No 115
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.75 E-value=0.056 Score=53.67 Aligned_cols=177 Identities=11% Similarity=0.141 Sum_probs=101.5
Q ss_pred ccccCCCCCcEEEEecCccccC------CHH----HHHHHHHHHHhCCCCEEEEEcCC-CCC-CCCC-CCCchhHHhhC-
Q 012083 278 SWLDKQPPGSVIYAAFGSISKL------SQQ----QFNELALGLELAGQPFLCGVRPG-FIN-GSST-NNPDGLVAKVA- 343 (471)
Q Consensus 278 ~~l~~~~~~~vv~vs~GS~~~~------~~~----~~~~~~~al~~~~~~~i~~~~~~-~~~-~~~~-~lp~~~~~~~~- 343 (471)
.|+...+++++|-|+....... ..+ .+..+++.+.+.++++++...-. ... ...+ .....+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4554434456888886543211 222 24445555555688876554211 000 0000 01122333332
Q ss_pred -CCcEEE--eccchh--hhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceee-ecCCCCC
Q 012083 344 -DFGKMV--KWAPQE--KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLW-LEPDDNG 417 (471)
Q Consensus 344 -~nv~~~--~~vpq~--~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~-~~~~~~~ 417 (471)
.++.++ ++-|.+ .+++++++ +|..= +=++.-|+..|||.+.+++ |.- ....+.+ +|.... .+. .
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K-~~~~~~~-lg~~~~~~~~---~ 375 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EHK-SAGIMQQ-LGLPEMAIDI---R 375 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hHH-HHHHHHH-cCCccEEech---h
Confidence 334443 333443 67755554 77532 3356678899999999987 433 3444467 788866 554 7
Q ss_pred CcCHhHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 418 IIGRHEIKRKVDELLSND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.++.++|.+.+.++++|. +++++.++..+++++ .......++++.+-
T Consensus 376 ~l~~~~Li~~v~~~~~~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 376 HLLDGSLQAMVADTLGQLPALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred hCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 788899999999999985 677777666666665 34456667776654
No 116
>PRK14098 glycogen synthase; Provisional
Probab=97.75 E-value=0.034 Score=56.65 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=53.8
Q ss_pred hhCCCcEEEeccchh---hhhccCcceeeeecc---Cc-chhhHhhhcCCceeeccccc--chhhhHHHHHhhhcceeee
Q 012083 341 KVADFGKMVKWAPQE---KVLAHPSVACYLTHC---GW-NSTMEGISMGVPFLCWPWGH--DHLYIKSCICDDWKIGLWL 411 (471)
Q Consensus 341 ~~~~nv~~~~~vpq~---~lL~~~~~~~~ItHg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~~v~~~~G~G~~~ 411 (471)
+.++++.+..+++.. .+++.+++ |+... |. .+.+||+++|+|.|+....+ |...+ ...+. +-|..+
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEe
Confidence 346788888888864 57866666 76543 22 37789999999888775432 22111 11122 677777
Q ss_pred cCCCCCCcCHhHHHHHHHHHh
Q 012083 412 EPDDNGIIGRHEIKRKVDELL 432 (471)
Q Consensus 412 ~~~~~~~~~~~~l~~~i~~ll 432 (471)
+. -+.+++.++|.+++
T Consensus 434 ~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 434 HD-----YTPEALVAKLGEAL 449 (489)
T ss_pred CC-----CCHHHHHHHHHHHH
Confidence 43 47899999999866
No 117
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00032 Score=55.59 Aligned_cols=109 Identities=13% Similarity=0.166 Sum_probs=69.7
Q ss_pred EEEecCccccCCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEE--eccch-hhhhccCcc
Q 012083 289 IYAAFGSISKLSQQQFNE--LALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMV--KWAPQ-EKVLAHPSV 363 (471)
Q Consensus 289 v~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~--~~vpq-~~lL~~~~~ 363 (471)
|||+.||....=...+.. +..-.+....++|+..+.. +..|- .+ .++. ++-+- ..+...++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~------d~kpv------ag-l~v~~F~~~~kiQsli~dar- 67 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG------DIKPV------AG-LRVYGFDKEEKIQSLIHDAR- 67 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC------Ccccc------cc-cEEEeechHHHHHHHhhcce-
Confidence 789999962211222222 2222333455889888764 22221 11 2344 44453 34554444
Q ss_pred eeeeeccCcchhhHhhhcCCceeeccccc--------chhhhHHHHHhhhcceeeecC
Q 012083 364 ACYLTHCGWNSTMEGISMGVPFLCWPWGH--------DHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 364 ~~~ItHgG~~s~~eal~~GvP~l~~P~~~--------DQ~~na~~v~~~~G~G~~~~~ 413 (471)
.+|+|+|.||++.++..++|.+++|-.. .|-.-|..+++ .+.=....+
T Consensus 68 -IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~sp 123 (161)
T COG5017 68 -IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSP 123 (161)
T ss_pred -EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcC
Confidence 5999999999999999999999999643 57788888888 687777753
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.73 E-value=0.01 Score=58.13 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCcEEEeccchh-hhhccCcceeeeec--cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCc
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYLTH--CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGII 419 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~ 419 (471)
++++.+.++.++. .+++.+++-++.++ |...++.||+++|+|+|+..... .....+.. -..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCC-----C
Confidence 5677777877664 68877777445554 34568999999999999864321 13344455 367777743 4
Q ss_pred CHhHHHHHHHHHhCcHHHHHH
Q 012083 420 GRHEIKRKVDELLSNDVVRKN 440 (471)
Q Consensus 420 ~~~~l~~~i~~ll~~~~~~~~ 440 (471)
+.+++.++|..+++|++..++
T Consensus 331 d~~~la~~i~~ll~~~~~~~~ 351 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQK 351 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHH
Confidence 789999999999999744333
No 119
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.71 E-value=0.0012 Score=65.77 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=63.8
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeeccC----cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+|+++. .+++..++++||...- -++++||+++|+|+|+.. -......+.+ -+.|..+.
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~-~~~G~l~~--- 359 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDN-GGNGLLLS--- 359 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcC-CCcEEEeC---
Confidence 3568888999976 4555445555775543 568999999999999864 3335556666 24888775
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVRKNA 441 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~~~a 441 (471)
..-+.+++.++|.++++|++.+++.
T Consensus 360 -~~~~~~~la~~I~~ll~~~~~~~~m 384 (407)
T cd04946 360 -KDPTPNELVSSLSKFIDNEEEYQTM 384 (407)
T ss_pred -CCCCHHHHHHHHHHHHhCHHHHHHH
Confidence 3347899999999999988654443
No 120
>PRK14099 glycogen synthase; Provisional
Probab=97.66 E-value=0.043 Score=55.79 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCcEEEEEcCC------CcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 16 TNVHVLLVSFP------AQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 16 ~~~~Il~~~~~------~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
++|||+|++.- +.|=-..+-+|.++|+++||+|.++.+..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 67899999843 45666678899999999999999998854
No 121
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.63 E-value=0.001 Score=57.28 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCCcEEEeccch---hhhhccCcceeeeec----cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 343 ADFGKMVKWAPQ---EKVLAHPSVACYLTH----CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 343 ~~nv~~~~~vpq---~~lL~~~~~~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
.+++.+.+++++ ..++..+++ +|+. |..+++.||+++|+|+|+. |...+...+.. .+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCC--
Confidence 578889999983 368877776 7766 6677999999999999975 45666666677 467899863
Q ss_pred CCCcCHhHHHHHHHHHhCcHHHHHHHHHHH
Q 012083 416 NGIIGRHEIKRKVDELLSNDVVRKNALKLK 445 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~ 445 (471)
.+.+++.++|.+++.|++.++++.+-+
T Consensus 143 ---~~~~~l~~~i~~~l~~~~~~~~l~~~~ 169 (172)
T PF00534_consen 143 ---NDIEELADAIEKLLNDPELRQKLGKNA 169 (172)
T ss_dssp ---TSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 388999999999999986555555443
No 122
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.62 E-value=0.032 Score=55.35 Aligned_cols=100 Identities=12% Similarity=-0.015 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccch----hhhhccCcceeeeec----cCcc
Q 012083 303 QFNELALGLELAGQPF-LCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQ----EKVLAHPSVACYLTH----CGWN 373 (471)
Q Consensus 303 ~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq----~~lL~~~~~~~~ItH----gG~~ 373 (471)
.+..+++|+...+..+ ++.++.. . . . ...++...++... ..+++.+++ ||.- |--+
T Consensus 257 g~~~li~A~~~l~~~~~L~ivG~g----~-~---~-----~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~ 321 (405)
T PRK10125 257 TDQQLVREMMALGDKIELHTFGKF----S-P---F-----TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPL 321 (405)
T ss_pred cHHHHHHHHHhCCCCeEEEEEcCC----C-c---c-----cccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcC
Confidence 3566888887765443 3444432 0 0 0 1244555566532 245544555 6653 3356
Q ss_pred hhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHH
Q 012083 374 STMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKV 428 (471)
Q Consensus 374 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i 428 (471)
+++||+++|+|+|+....+ ....+.. +-|..+++ -+.++|++.+
T Consensus 322 vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 322 ILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred HHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECC-----CCHHHHHhcc
Confidence 8999999999999997654 2222222 56888864 3567777643
No 123
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.55 E-value=0.0045 Score=60.96 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=61.4
Q ss_pred hCCCcEEEeccchh---hhhccCcceeeeec----cCc-chhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecC
Q 012083 342 VADFGKMVKWAPQE---KVLAHPSVACYLTH----CGW-NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 342 ~~~nv~~~~~vpq~---~lL~~~~~~~~ItH----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 413 (471)
...++.+.+++|+. .+++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+.+ -..|..+.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~- 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLA- 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEe-
Confidence 45778888999865 56877777 6643 332 5788999999999997543 34445555 25676553
Q ss_pred CCCCCcCHhHHHHHHHHHhCcHHHH
Q 012083 414 DDNGIIGRHEIKRKVDELLSNDVVR 438 (471)
Q Consensus 414 ~~~~~~~~~~l~~~i~~ll~~~~~~ 438 (471)
...+.+++.++|.++++|++.+
T Consensus 327 ---~~~d~~~la~~I~~ll~d~~~~ 348 (380)
T PRK15484 327 ---EPMTSDSIISDINRTLADPELT 348 (380)
T ss_pred ---CCCCHHHHHHHHHHHHcCHHHH
Confidence 2347899999999999998653
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.48 E-value=0.014 Score=52.29 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=35.6
Q ss_pred CCCcEEEeccch-h---hhhccCcceeeeeccC----cchhhHhhhcCCceeeccccc
Q 012083 343 ADFGKMVKWAPQ-E---KVLAHPSVACYLTHCG----WNSTMEGISMGVPFLCWPWGH 392 (471)
Q Consensus 343 ~~nv~~~~~vpq-~---~lL~~~~~~~~ItHgG----~~s~~eal~~GvP~l~~P~~~ 392 (471)
.+|+.+.+++++ . .+++.+++ +|+... .+++.||+++|+|+|+.+...
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 578888888732 2 34433555 887776 789999999999999987654
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.32 E-value=0.047 Score=52.34 Aligned_cols=134 Identities=10% Similarity=0.031 Sum_probs=75.9
Q ss_pred CcEEEEecCcc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEe--ccchh-hhhc
Q 012083 286 GSVIYAAFGSI---SKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVK--WAPQE-KVLA 359 (471)
Q Consensus 286 ~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~--~vpq~-~lL~ 359 (471)
++.|.+..|+. ..++.+.+.++++.+.+.++++++..++. .+........+..+. ..+.+ -+++. .+++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~----~e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGND----AEKQRAERIAEALPG-AVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCH----HHHHHHHHHHhhCCC-CeecCCCCHHHHHHHHH
Confidence 45666666643 45678889999998876677776654432 111111122222222 22333 24443 7886
Q ss_pred cCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhccee-eecCCCCCCcCHhHHHHHHHHHh
Q 012083 360 HPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGL-WLEPDDNGIIGRHEIKRKVDELL 432 (471)
Q Consensus 360 ~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~-~~~~~~~~~~~~~~l~~~i~~ll 432 (471)
++++ +|+. -.|.++=|...|+|++++ ++ +.+..+-.= +|-.. .+..+....++++++.++++++|
T Consensus 254 ~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 254 GADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred cCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 6666 9987 467788888999999986 22 111222111 12211 11111147899999999998875
No 126
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.27 E-value=0.0056 Score=60.98 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhh------CCCcEEEeccchh--
Q 012083 284 PPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKV------ADFGKMVKWAPQE-- 355 (471)
Q Consensus 284 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~------~~nv~~~~~vpq~-- 355 (471)
++..+||.+|--....++..++.-++.|...+..++|.+..+..- ...|.... |+++.+.+-++-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g------e~rf~ty~~~~Gl~p~riifs~va~k~eH 829 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG------EQRFRTYAEQLGLEPDRIIFSPVAAKEEH 829 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc------hHHHHHHHHHhCCCccceeeccccchHHH
Confidence 345699999999999999999999999999999999999754100 02222221 5666666555532
Q ss_pred ---hhhccCcceeeeeccCcchhhHhhhcCCceeecccccc-hhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHH
Q 012083 356 ---KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHD-HLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDEL 431 (471)
Q Consensus 356 ---~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~D-Q~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 431 (471)
-.|+.-.++-+.+. |..|.++.|++|||||.+|...- ...-+..+.. +|+|-.+.+ +.++-.+.--++
T Consensus 830 vrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------~~eEY~~iaV~L 901 (966)
T KOG4626|consen 830 VRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------NREEYVQIAVRL 901 (966)
T ss_pred HHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------hHHHHHHHHHHh
Confidence 34444444546665 67899999999999999998543 3334445555 799987753 444444433344
Q ss_pred hCcHH
Q 012083 432 LSNDV 436 (471)
Q Consensus 432 l~~~~ 436 (471)
-.|.+
T Consensus 902 atd~~ 906 (966)
T KOG4626|consen 902 ATDKE 906 (966)
T ss_pred hcCHH
Confidence 44543
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.22 E-value=0.17 Score=46.68 Aligned_cols=113 Identities=13% Similarity=-0.009 Sum_probs=74.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI--CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
||+|-- +-.-|+.-+..+-.+|.++||+|.+.+-... .+.+... |+.+..+... ....
T Consensus 2 kVwiDI-~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y--------------gf~~~~Igk~-----g~~t 61 (346)
T COG1817 2 KVWIDI-GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY--------------GFPYKSIGKH-----GGVT 61 (346)
T ss_pred eEEEEc-CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh--------------CCCeEeeccc-----CCcc
Confidence 555543 4556888999999999999999988766432 2333333 7777776421 1223
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchHH
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
+.+.+.....+ .-.+.+++.+ .+||+.+. -.+..+..+|--+|+|.|++....-.
T Consensus 62 l~~Kl~~~~eR-~~~L~ki~~~-------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 62 LKEKLLESAER-VYKLSKIIAE-------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHHHHHHHH-HHHHHHHHhh-------cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 33222222211 1224555555 99999998 66778999999999999998765443
No 128
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.12 E-value=0.003 Score=61.03 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=78.1
Q ss_pred hCCCcEEEeccchhhh---hccCcceeeeecc-------Cc------chhhHhhhcCCceeecccccchhhhHHHHHhhh
Q 012083 342 VADFGKMVKWAPQEKV---LAHPSVACYLTHC-------GW------NSTMEGISMGVPFLCWPWGHDHLYIKSCICDDW 405 (471)
Q Consensus 342 ~~~nv~~~~~vpq~~l---L~~~~~~~~ItHg-------G~------~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~ 405 (471)
..+||.+.+|+|+.++ |+. +.+++...- .+ +-+.+.|++|+|+|+. ++...+..+++ .
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~ 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-N 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-C
Confidence 3578999999998755 443 333222211 11 1267789999999985 55678888888 5
Q ss_pred cceeeecCCCCCCcCHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 012083 406 KIGLWLEPDDNGIIGRHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQ 468 (471)
Q Consensus 406 G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~ 468 (471)
++|..++ +.+++.+++..+..+. ++++|++++++++++ |---.+++++.+..
T Consensus 279 ~~G~~v~-------~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 279 GLGFVVD-------SLEELPEIIDNITEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred CceEEeC-------CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 9999994 5578999998865332 688999999999986 66666666666543
No 129
>PLN02939 transferase, transferring glycosyl groups
Probab=97.06 E-value=0.65 Score=50.22 Aligned_cols=91 Identities=10% Similarity=0.139 Sum_probs=56.9
Q ss_pred CCCcEEEeccchh---hhhccCcceeeeecc----CcchhhHhhhcCCceeeccccc--chhhh--HHHH-Hhhhcceee
Q 012083 343 ADFGKMVKWAPQE---KVLAHPSVACYLTHC----GWNSTMEGISMGVPFLCWPWGH--DHLYI--KSCI-CDDWKIGLW 410 (471)
Q Consensus 343 ~~nv~~~~~vpq~---~lL~~~~~~~~ItHg----G~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~~v-~~~~G~G~~ 410 (471)
.++|.+..+.+.. .+++.+++ ||.-. --.+.+||+++|+|.|+....+ |...+ ...+ .+ -+-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 4578888887764 47866666 77542 2347899999999998876533 22211 1111 12 246777
Q ss_pred ecCCCCCCcCHhHHHHHHHHHhC----cHHHHHHH
Q 012083 411 LEPDDNGIIGRHEIKRKVDELLS----NDVVRKNA 441 (471)
Q Consensus 411 ~~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~a 441 (471)
+.. .+.+++.++|.+++. |++.+++.
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dpe~~~~L 942 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKPEVWKQL 942 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 743 477889988888774 55544443
No 130
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.05 E-value=0.011 Score=48.86 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=66.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEA 98 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (471)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. .....
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~-------------~~~i~~~~~~~~------~k~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI-------------IEGIKVIRLPSP------RKSPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH-------------hCCeEEEEecCC------CCccH
Confidence 577887666555 56889999999999999999655433322 238888887432 11122
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcC-CceEEEeC
Q 012083 99 KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLE-LKKASIYT 156 (471)
Q Consensus 99 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lg-iP~v~~~~ 156 (471)
.++. .. .+..++.+ .+||+|.+-.... .+..++...+ +|++....
T Consensus 59 ~~~~-----~~-~l~k~ik~-------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYIK-----YF-RLRKIIKK-------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-----HH-HHHHHhcc-------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 2221 11 34555555 8999998776543 3445667888 89887543
No 131
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.03 E-value=0.0027 Score=52.22 Aligned_cols=80 Identities=15% Similarity=0.200 Sum_probs=49.5
Q ss_pred CCCcEEEeccchh-hhhccCcceeeeec---cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCC
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYLTH---CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGI 418 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~ItH---gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 418 (471)
.+|+.+.+|++.. .+++.+++.+..+. |-.+++.|++++|+|+|+.+.. ....++. .+.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~-~~~~~~~~------ 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEE-DGCGVLVA------ 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-T------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheee-cCCeEEEC------
Confidence 5699999999743 67888887555442 2348999999999999998762 1222333 37777773
Q ss_pred cCHhHHHHHHHHHhCc
Q 012083 419 IGRHEIKRKVDELLSN 434 (471)
Q Consensus 419 ~~~~~l~~~i~~ll~~ 434 (471)
-+.+++.++|+++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 2889999999999875
No 132
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.96 E-value=0.12 Score=50.25 Aligned_cols=110 Identities=9% Similarity=0.118 Sum_probs=73.3
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeE-EEeCCCCCC
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVR-IVPLPDGLE 89 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~ 89 (471)
|+...+|||++-....|++.-..++.++|+++ +.+|++++.+.+.+.++.. +.+. ++.++..
T Consensus 1 ~~~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------------P~id~vi~~~~~-- 65 (352)
T PRK10422 1 MDKPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN-------------PEINALYGIKNK-- 65 (352)
T ss_pred CCCCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC-------------CCceEEEEeccc--
Confidence 34445899999999999999999999999997 8999999999988877644 2332 2222211
Q ss_pred CCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 90 PEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
.......+. ....++.+++. .++|++|.-........++...|.|..+
T Consensus 66 ----~~~~~~~~~--------~~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 66 ----KAGASEKIK--------NFFSLIKVLRA----NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ----cccHHHHHH--------HHHHHHHHHhh----CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 001111111 12234455555 8999999654444556677777888755
No 133
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.80 E-value=0.12 Score=48.54 Aligned_cols=102 Identities=12% Similarity=0.127 Sum_probs=67.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeE-EEeCCCCCCCCCCcc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVR-IVPLPDGLEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 95 (471)
|||++-....|++.-+.++.++|+++ +-+|++++.+...+.++.. +.+. +..++.. ....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~-------------p~id~v~~~~~~----~~~~ 63 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM-------------PEVDRVIVLPKK----HGKL 63 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC-------------CccCEEEEcCCc----cccc
Confidence 68999999999999999999999997 4899999999888877754 1332 2222211 0000
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
.. ....+++..++. .++|+++.-........++...+++...
T Consensus 64 ~~------------~~~~~~~~~l~~----~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 64 GL------------GARRRLARALRR----RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ch------------HHHHHHHHHHhh----cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 11 112344555555 7999999766555444556666666544
No 134
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.7 Score=46.42 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=73.1
Q ss_pred CCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHH---hh---CCCcEEEeccchh--
Q 012083 284 PPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVA---KV---ADFGKMVKWAPQE-- 355 (471)
Q Consensus 284 ~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~---~~---~~nv~~~~~vpq~-- 355 (471)
++.-+||+||+......++.+..=++.+...+..++|..+++ ..+...+.+.+ +. .++.++.+-.|..
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~----~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG----DDAEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC----CcHHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 345699999999999999999998899998999999999874 11111111111 11 3555665655543
Q ss_pred -hhhccCcceeee---eccCcchhhHhhhcCCceeecccccchh
Q 012083 356 -KVLAHPSVACYL---THCGWNSTMEGISMGVPFLCWPWGHDHL 395 (471)
Q Consensus 356 -~lL~~~~~~~~I---tHgG~~s~~eal~~GvP~l~~P~~~DQ~ 395 (471)
+=+.-+++ |+ --||..|+.|+|++|||||..+ ++|+
T Consensus 503 ~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 503 RARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 33333443 55 4699999999999999999985 6775
No 135
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.72 E-value=0.25 Score=48.01 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=71.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEe-CCCCCCCCCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVP-LPDGLEPEDDR 94 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~ 94 (471)
||||++-..+.|++.-..++.++|+++ +.+|++++.+.+.+.++.. +.++-+. ++. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------------P~vd~vi~~~~----~~-- 61 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM-------------PEVNEAIPMPL----GH-- 61 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC-------------CccCEEEeccc----cc--
Confidence 589999999999999999999999995 8999999998888877754 2333221 211 00
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
.... + ....+++..++. .++|++|.-....-...++...|+|.-.
T Consensus 62 -~~~~-~--------~~~~~l~~~lr~----~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 62 -GALE-I--------GERRRLGHSLRE----KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -chhh-h--------HHHHHHHHHHHh----cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0000 0 112344455555 8999999665555566777888888655
No 136
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.57 E-value=0.061 Score=51.01 Aligned_cols=168 Identities=12% Similarity=0.036 Sum_probs=86.3
Q ss_pred cCcEEEEcchhhhchhhhhhCCCc-ceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecC-cc--ccCCHHHHH
Q 012083 230 ASDRILCTWFHELAPSANKILPSI-IPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFG-SI--SKLSQQQFN 305 (471)
Q Consensus 230 ~~~~~l~~s~~~l~~~~~~~~~~~-~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~G-S~--~~~~~~~~~ 305 (471)
..|++++..+..+. ..+|+ ...|+++.-.+. ........+..-+...+ ++.+-|-.| .. ...+.+...
T Consensus 97 ~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~~~--~l~~a~~~~~~~~~~l~-~p~~avLIGG~s~~~~~~~~~~~ 168 (311)
T PF06258_consen 97 PFDLVIVPEHDRLP-----RGPNVLPTLGAPNRITPE--RLAEAAAAWAPRLAALP-RPRVAVLIGGDSKHYRWDEEDAE 168 (311)
T ss_pred ccCEEEECcccCcC-----CCCceEecccCCCcCCHH--HHHHHHHhhhhhhccCC-CCeEEEEECcCCCCcccCHHHHH
Confidence 45677777665441 12344 556666654431 00001111111122222 344544444 32 445666333
Q ss_pred H----HHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhC--CCcEEE---eccchhhhhccCcceeeeeccCcchhh
Q 012083 306 E----LALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVA--DFGKMV---KWAPQEKVLAHPSVACYLTHCGWNSTM 376 (471)
Q Consensus 306 ~----~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~--~nv~~~---~~vpq~~lL~~~~~~~~ItHgG~~s~~ 376 (471)
. +...++..+.++++++.... ....-..+.+... ..+.+. +.=|+...|+.++. .|||=-..+.+.
T Consensus 169 ~l~~~l~~~~~~~~~~~~vttSRRT----p~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~-i~VT~DSvSMvs 243 (311)
T PF06258_consen 169 RLLDQLAALAAAYGGSLLVTTSRRT----PPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADA-IVVTEDSVSMVS 243 (311)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC----cHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCE-EEEcCccHHHHH
Confidence 3 33344555556666665541 1111122222221 223232 22367788887875 688888899999
Q ss_pred HhhhcCCceeecccccchhh----hHHHHHhhhcceeeec
Q 012083 377 EGISMGVPFLCWPWGHDHLY----IKSCICDDWKIGLWLE 412 (471)
Q Consensus 377 eal~~GvP~l~~P~~~DQ~~----na~~v~~~~G~G~~~~ 412 (471)
||+..|+|+.++|... +.. -...+.+ .|+-..+.
T Consensus 244 EA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 244 EAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred HHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 9999999999999876 322 2233445 36655554
No 137
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.54 E-value=0.0038 Score=47.73 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=44.2
Q ss_pred cCcchhcccccCCCCCcEEEEecCccccC---CH--HHHHHHHHHHHhCCCCEEEEEcCC
Q 012083 271 SEDLTCLSWLDKQPPGSVIYAAFGSISKL---SQ--QQFNELALGLELAGQPFLCGVRPG 325 (471)
Q Consensus 271 ~~~~~l~~~l~~~~~~~vv~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 325 (471)
+....+..|+...++++.|++|+||.... .. ..+..++++++.++..+|.+++..
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 34455568999999999999999997443 22 368889999999999999999865
No 138
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.30 E-value=0.2 Score=48.61 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=71.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeE-EEeCCCCCCCCCCcc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVR-IVPLPDGLEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 95 (471)
|||++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.+. ++.++..... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------------p~vd~vi~~~~~~~~----~ 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN-------------PDINALYGLDRKKAK----A 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC-------------CCccEEEEeChhhhc----c
Confidence 68999999999999999999999986 8999999999988877754 2343 2333211000 0
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEE
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASI 154 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~ 154 (471)
.. ..+. ...+++..++. .++|++|.-........++...|.|.-+-
T Consensus 64 ~~----~~~~-----~~~~l~~~lr~----~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 64 GE----RKLA-----NQFHLIKVLRA----NRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred hH----HHHH-----HHHHHHHHHHh----CCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 00 0110 11233444554 89999996554556677888889996553
No 139
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.29 E-value=1.6 Score=44.63 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCCcEEEeccchh-hhhccCcceeeeec---cC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecC
Q 012083 343 ADFGKMVKWAPQE-KVLAHPSVACYLTH---CG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEP 413 (471)
Q Consensus 343 ~~nv~~~~~vpq~-~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~ 413 (471)
.++|.+.+|..+. .+|+.+++ ||.. -| -+++.||+++|+|+|+... ..+...+.+ -..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECC
Confidence 4788888886543 57866766 7753 34 5699999999999998754 345566666 367888864
No 140
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.02 E-value=0.011 Score=49.67 Aligned_cols=98 Identities=20% Similarity=0.125 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccHH
Q 012083 32 ASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGY 111 (471)
Q Consensus 32 ~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (471)
.-+..|+++|.++||+|++++........+ ....++.+..++-..... ......++ ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~ 62 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDE------------EEEDGVRVHRLPLPRRPW--PLRLLRFL--------RR 62 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-S------------EEETTEEEEEE--S-SSS--GGGHCCHH--------HH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccc------------cccCCceEEeccCCccch--hhhhHHHH--------HH
Confidence 346789999999999999999765554221 112377777765221111 00111111 12
Q ss_pred HHHHHHHHhcccCCCCeeEEEECCCcc-hHHHHHH-HcCCceEEEeC
Q 012083 112 LEELIQKINQQEEDEKITCVIADVTFG-WALQVAA-KLELKKASIYT 156 (471)
Q Consensus 112 ~~~ll~~l~~~~~~~~pD~vV~D~~~~-~~~~~A~-~lgiP~v~~~~ 156 (471)
+..++ .... .+||+|.+..... ....+++ ..++|+|....
T Consensus 63 ~~~~l-~~~~----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 63 LRRLL-AARR----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHC-HHCT-------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHH-hhhc----cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 23333 1122 8999999887432 2333444 88999998653
No 141
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.01 E-value=0.76 Score=44.27 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=68.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEE-EeCCCCCCCCCCcc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRI-VPLPDGLEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~ 95 (471)
|||++-..+.|++.-..++.++|++. +.+|++++.+.+.+.++.. +.+.- +.++.. .
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~-------------p~id~v~~~~~~----~--- 60 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM-------------PEIRQAIDMPLG----H--- 60 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC-------------chhceeeecCCc----c---
Confidence 68999999999999999999999986 8999999998887777644 13322 222111 0
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
....+ ....+++.+++. .++|++|.-....-...++...|+|.-.
T Consensus 61 ~~~~~---------~~~~~~~~~lr~----~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 61 GALEL---------TERRRLGRSLRE----ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred cchhh---------hHHHHHHHHHhh----cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 00000 011234445554 7999999766555666677777888644
No 142
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.91 E-value=0.29 Score=47.20 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=73.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
|||+++-...-|++.-..++-+.|+++ +.++++++.+.+.+.+... +.+.-+..-+. ...
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~-------------p~I~~vi~~~~-----~~~ 63 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN-------------PEIDKVIIIDK-----KKK 63 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC-------------hHhhhhccccc-----ccc
Confidence 899999999999999999999999998 5999999999998877654 12222211000 011
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
. ........+.+.++. .++|+||.=....-...++...++|.-.-+.
T Consensus 64 ~----------~~~~~~~~l~~~lr~----~~yD~vidl~~~~ksa~l~~~~~~~~r~g~~ 110 (334)
T COG0859 64 G----------LGLKERLALLRTLRK----ERYDAVIDLQGLLKSALLALLLGIPFRIGFD 110 (334)
T ss_pred c----------cchHHHHHHHHHhhc----cCCCEEEECcccHHHHHHHHHhCCCcccccc
Confidence 1 111223344555554 7899999766666667777788888777443
No 143
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.83 E-value=1.4 Score=39.89 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=55.2
Q ss_pred EEEEecCccc--cCCHHHHH---H-HHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCC-cEE-----Eeccchh
Q 012083 288 VIYAAFGSIS--KLSQQQFN---E-LALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADF-GKM-----VKWAPQE 355 (471)
Q Consensus 288 vv~vs~GS~~--~~~~~~~~---~-~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n-v~~-----~~~vpq~ 355 (471)
|-++-.|+.. .+.++... . +.+.+++.+.+|+++..... .+....-+.+++... +.+ .++=|+-
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRT----p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~ 239 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRT----PDTVKSILKNNLNSSPGIVWNNEDTGYNPYI 239 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCC----cHHHHHHHHhccccCceeEeCCCCCCCCchH
Confidence 4444455553 33344433 2 55667889999999987652 111111111111111 111 1445888
Q ss_pred hhhccCcceeeeeccCcchhhHhhhcCCceeec
Q 012083 356 KVLAHPSVACYLTHCGWNSTMEGISMGVPFLCW 388 (471)
Q Consensus 356 ~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 388 (471)
+.|+.++. .++|--..|..+||.+.|+|+-++
T Consensus 240 ~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 240 DMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred HHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 99966554 355666788889999999999665
No 144
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.68 E-value=0.079 Score=45.16 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=58.6
Q ss_pred hCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcc
Q 012083 43 DCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQ 122 (471)
Q Consensus 43 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 122 (471)
++||+|+|+|........ +|++...+...-............++.-....+. +...+.+|++.
T Consensus 1 q~gh~v~fl~~~~~~~~~----------------~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~a-v~~a~~~L~~~ 63 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP----------------PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQA-VARAARQLRAQ 63 (171)
T ss_pred CCCCEEEEEecCCCCCCC----------------CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHH-HHHHHHHHHHc
Confidence 479999999965544322 2777777654222222222222333433333333 44455666666
Q ss_pred cCCCCeeEEEECCCcchHHHHHHHc-CCceEEEeC
Q 012083 123 EEDEKITCVIADVTFGWALQVAAKL-ELKKASIYT 156 (471)
Q Consensus 123 ~~~~~pD~vV~D~~~~~~~~~A~~l-giP~v~~~~ 156 (471)
+ ..||+||.-...-.+.-+-+.+ ++|++.+.-
T Consensus 64 G--f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 64 G--FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred C--CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 6 9999999987655677788888 899998753
No 145
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.60 E-value=2.3 Score=40.76 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=41.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~ 63 (471)
||||++-....|++.-..++.+.|++. +.+||+++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 599999999999999999999999996 9999999998887766543
No 146
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.26 E-value=0.18 Score=38.09 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=44.3
Q ss_pred ccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhc-ceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 369 HCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWK-IGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 369 HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
+|-..-+.|++++|+|+|+-.. ......+.. | -++.. . +.+++.+++..+++|++.+++.++-+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~-----~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY-----N--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE-----C--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5556689999999999998854 222222222 4 23333 2 8899999999999998655555444433
No 147
>PHA01630 putative group 1 glycosyl transferase
Probab=95.21 E-value=0.42 Score=45.96 Aligned_cols=93 Identities=16% Similarity=0.226 Sum_probs=54.7
Q ss_pred eccchh---hhhccCcceeee--ec-cC-cchhhHhhhcCCceeeccccc--chhh---hHHHHHhh----------hcc
Q 012083 350 KWAPQE---KVLAHPSVACYL--TH-CG-WNSTMEGISMGVPFLCWPWGH--DHLY---IKSCICDD----------WKI 407 (471)
Q Consensus 350 ~~vpq~---~lL~~~~~~~~I--tH-gG-~~s~~eal~~GvP~l~~P~~~--DQ~~---na~~v~~~----------~G~ 407 (471)
.++|+. .+++.+++ ++ ++ .| -.++.||+++|+|+|+.-..+ |... |+..+... .++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 346654 46766776 55 23 22 568999999999999976432 3221 21111100 134
Q ss_pred eeeecCCCCCCcCHhHHHHHHHHHhCc---HHHHHHHHHHHHHHHH
Q 012083 408 GLWLEPDDNGIIGRHEIKRKVDELLSN---DVVRKNALKLKELAQK 450 (471)
Q Consensus 408 G~~~~~~~~~~~~~~~l~~~i~~ll~~---~~~~~~a~~l~~~~~~ 450 (471)
|..+.+ +.+++.+++.++|.| ++++++.+.-+...++
T Consensus 274 G~~v~~------~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~ 313 (331)
T PHA01630 274 GYFLDP------DIEDAYQKLLEALANWTPEKKKENLEGRAILYRE 313 (331)
T ss_pred ccccCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 555542 567888888888887 4566655555554444
No 148
>PHA01633 putative glycosyl transferase group 1
Probab=95.15 E-value=0.56 Score=44.99 Aligned_cols=85 Identities=9% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hCCCcEEE---eccchh---hhhccCcceeeeec---cC-cchhhHhhhcCCceeeccc------ccch------hhhHH
Q 012083 342 VADFGKMV---KWAPQE---KVLAHPSVACYLTH---CG-WNSTMEGISMGVPFLCWPW------GHDH------LYIKS 399 (471)
Q Consensus 342 ~~~nv~~~---~~vpq~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~ 399 (471)
.++++.+. +++++. .+++.+++ ||.- -| -++++||+++|+|+|+--. .+|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 36778887 455543 56766766 7764 23 4578999999999998633 2232 22222
Q ss_pred HHH--hhhcceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 400 CIC--DDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 400 ~v~--~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
... + .|.|..+ ...++++++++|.+++..
T Consensus 277 ~~~~~~-~g~g~~~-----~~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKE-HGQKWKI-----HKFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCcc-cCceeee-----cCCCHHHHHHHHHHHHhc
Confidence 222 2 2566666 447999999999999543
No 149
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.07 E-value=0.064 Score=47.02 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=62.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-----
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED----- 92 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----- 92 (471)
||||+.-=-+. +---+.+|+++|.+.||+|+++.+...+.-.-.+. .....++...........+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si---------t~~~pl~~~~~~~~~~~~~~~~~~ 70 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSI---------TLHKPLRVTEVEPGHDPGGVEAYA 70 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS-----------SSSEEEEEEEE-TTCCSTTEEEE
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceee---------cCCCCeEEEEEEecccCCCCCEEE
Confidence 47777654444 44557899999988899999999988766543321 2223555544321111111
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC----------Ccc---hHHHHHHHcCCceEEEeCc
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV----------TFG---WALQVAAKLELKKASIYTS 157 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~----------~~~---~~~~~A~~lgiP~v~~~~~ 157 (471)
-...+.+ +-.+. +..++.. .+||+||+.. +++ +|+.-|...|||.|.++..
T Consensus 71 v~GTPaD-cv~~a------l~~~~~~-------~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 71 VSGTPAD-CVKLA------LDGLLPD-------KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp ESS-HHH-HHHHH------HHCTSTT-------SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred EcCcHHH-HHHHH------HHhhhcc-------CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 1122221 11111 2222222 4699999642 222 4566778899999998753
No 150
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.43 E-value=1.1 Score=40.96 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCcc-cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC--CCCCCC
Q 012083 16 TNVHVLLVSFPAQG-HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD--GLEPED 92 (471)
Q Consensus 16 ~~~~Il~~~~~~~G-H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~ 92 (471)
++||||+.- --| |.--+.+|+++|.+.| +|+++.+...+.-.-.+. +....+++..+.. ......
T Consensus 4 ~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai---------t~~~pl~~~~~~~~~~~~~y~ 71 (257)
T PRK13932 4 KKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAM---------TLGVPLRIKEYQKNNRFFGYT 71 (257)
T ss_pred CCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccc---------cCCCCeEEEEEccCCCceEEE
Confidence 457988764 333 3345778899998888 799998877665443321 2233566665531 110000
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV----------TFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~----------~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
-...+.+ | +.--+..+.. .+||+||+.. +++ +|+.-|..+|||.|.+|.
T Consensus 72 v~GTPaD-C----------V~lal~~~~~----~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 72 VSGTPVD-C----------IKVALSHILP----EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred EcCcHHH-H----------HHHHHHhhcC----CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1112221 1 1111222222 5899999643 222 466777889999999885
No 151
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.33 E-value=1.2 Score=36.55 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 15 KTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 15 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+++.||++.+.++-+|-.-..-++..|..+|++|++++.....+.+.+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 3678999999999999999999999999999999999987665555444
No 152
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=93.28 E-value=0.85 Score=38.66 Aligned_cols=32 Identities=25% Similarity=0.201 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 26 PAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 26 ~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
...|=-.-+..|+++|+++||+|++++.....
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred CCChHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 35577788999999999999999999876444
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=93.17 E-value=0.72 Score=36.85 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
||++.+.++-.|.....-++..|.++|++|.+.......+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~ 43 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIV 43 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 5889999999999999999999999999999887654444443
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.65 Score=38.79 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD 86 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 86 (471)
..|||++...|+.|-..-++.++..|.++|+.|-=+-++.-++--... |++.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~--------------GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRI--------------GFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEe--------------eeEEEEccC
Confidence 359999999999999999999999999999999855444444322222 888888863
No 155
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.48 E-value=1.2 Score=38.24 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=59.8
Q ss_pred EcCCCcccHHHHHHHHHHH-HhC-CCeEEEEeCCcchhh--hHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHH
Q 012083 23 VSFPAQGHVASLMKLAHRL-ADC-RIKVTFVTTEFICER--IKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEA 98 (471)
Q Consensus 23 ~~~~~~GH~~p~~~La~~L-~~r-Gh~Vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (471)
+..++.||+.-|+.|.+.+ .++ .++..+++..+.... +.+.... ......+..+|....-. +...
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~--------~~~~~~~~~~~r~r~v~---q~~~ 71 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKS--------SSKRHKILEIPRAREVG---QSYL 71 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHh--------ccccceeeccceEEEec---hhhH
Confidence 3347899999999999999 333 566666666554332 2221100 00011333333211111 1111
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHc------CCceEEEeC
Q 012083 99 KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKL------ELKKASIYT 156 (471)
Q Consensus 99 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~l------giP~v~~~~ 156 (471)
.....+.......+.-+ .. .+||+||+..... ....+|..+ |.+.|.+-+
T Consensus 72 ~~~~~~l~~~~~~~~il----~r----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 72 TSIFTTLRAFLQSLRIL----RR----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhHHHHHHHHHHHHHHH----HH----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 11111111122222222 22 6999999998765 556678888 899888754
No 156
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=92.23 E-value=0.72 Score=42.38 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=55.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh-HHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERI-KESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
|||+++...+. -..|++.|.++||+|+..+........ .+.+ +..... +.
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-------------~~~v~~--g~--------- 51 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-------------ALTVHT--GA--------- 51 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccccC-------------CceEEE--CC---------
Confidence 47777653332 568999999999999987776654322 2210 112211 00
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH-------HHHHHHcCCceEEEe
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA-------LQVAAKLELKKASIY 155 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~-------~~~A~~lgiP~v~~~ 155 (471)
+ -...+++++++ .++|+|| |..-++| ..+|+.+|||++.+-
T Consensus 52 l----------~~~~l~~~l~~-------~~i~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 52 L----------DPQELREFLKR-------HSIDILV-DATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred C----------CHHHHHHHHHh-------cCCCEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0 01124455666 8999887 5444433 578899999999963
No 157
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=91.48 E-value=4 Score=40.85 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=101.9
Q ss_pred ccCcEEEEcchhhhchhhhhhCC-----CcceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHH
Q 012083 229 EASDRILCTWFHELAPSANKILP-----SIIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQ 303 (471)
Q Consensus 229 ~~~~~~l~~s~~~l~~~~~~~~~-----~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~ 303 (471)
.+-+.+++.|..+-+.- ....+ .+.++|-+...+ ...+..+.++.++ ..+.
T Consensus 238 ~~~~~iIv~T~~q~~di-~~r~~~~~~~~~ip~g~i~~~~----------------~~~r~~~~~l~~t-------~s~~ 293 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKI-KELLDNEYQEQISQLGYLYPFK----------------KDNKYRKQALILT-------NSDQ 293 (438)
T ss_pred cccCeEEeCCHHHHHHH-HHHhCcccCceEEEEEEEEeec----------------cccCCcccEEEEC-------CHHH
Confidence 56778888885543321 11111 456666663210 1222334577776 2556
Q ss_pred HHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEE-eccch--hhhhccCcceeeeeccC--cchhhH
Q 012083 304 FNELALGLELA-GQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMV-KWAPQ--EKVLAHPSVACYLTHCG--WNSTME 377 (471)
Q Consensus 304 ~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~-~~vpq--~~lL~~~~~~~~ItHgG--~~s~~e 377 (471)
+..+....+++ +..|-+..+... ...|- .+ ++. +|+.+. ++.++ ..++..+++-+-|+||. .+++.|
T Consensus 294 I~~i~~Lv~~lPd~~f~Iga~te~----s~kL~-~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~e 366 (438)
T TIGR02919 294 IEHLEEIVQALPDYHFHIAALTEM----SSKLM-SL-DKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRR 366 (438)
T ss_pred HHHHHHHHHhCCCcEEEEEecCcc----cHHHH-HH-Hhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHH
Confidence 66666666554 445555443221 01111 12 233 666655 77883 37999999999999977 679999
Q ss_pred hhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHHHHHH
Q 012083 378 GISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALKLKEL 447 (471)
Q Consensus 378 al~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~l~~~ 447 (471)
|+.+|+|++..=...... .... . |-.+. .-+.+++.++|.++|+|++.-+.+-..+++
T Consensus 367 A~~~G~pI~afd~t~~~~----~~i~--~-g~l~~-----~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~ 424 (438)
T TIGR02919 367 AFEYNLLILGFEETAHNR----DFIA--S-ENIFE-----HNEVDQLISKLKDLLNDPNQFRELLEQQRE 424 (438)
T ss_pred HHHcCCcEEEEecccCCc----cccc--C-Cceec-----CCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999874332111 1111 1 33442 236799999999999998543333333333
No 158
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=91.26 E-value=2 Score=39.10 Aligned_cols=112 Identities=19% Similarity=0.124 Sum_probs=62.1
Q ss_pred cEEEEEcCCCcc-cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC--CCCCCCCc
Q 012083 18 VHVLLVSFPAQG-HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD--GLEPEDDR 94 (471)
Q Consensus 18 ~~Il~~~~~~~G-H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 94 (471)
||||+.= --| |---+.+|+++|.+.| +|+++.+...+.-.-.+. +....+++..++. +.....-.
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ai---------t~~~pl~~~~~~~~~~~~~~~v~ 68 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGTGHSL---------TLFEPLRVGQVKVKNGAHIYAVD 68 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCc---------CCCCCeEEEEeccCCCccEEEEc
Confidence 3666432 333 3334778999999988 899999987766554331 2234566665531 11000001
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV----------TFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~----------~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
..+.+ |-. --+..+.. .+||+||+.. +++ +|+.-|..+|||.|.+|.
T Consensus 69 GTPaD-cv~----------~gl~~l~~----~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 69 GTPTD-CVI----------LGINELMP----EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred CcHHH-HHH----------HHHHHhcc----CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 11211 111 11222222 5799998643 222 456777889999999875
No 159
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=90.49 E-value=0.42 Score=38.04 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=29.2
Q ss_pred cEEEEEcCCCcc---cHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQG---HVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~G---H~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
|||+|+.-|-.+ .-.-.++|+.+.++|||+|.+++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 599999987655 4467889999999999999999887653
No 160
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.11 E-value=5 Score=36.72 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=59.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC-CCCCC-C-CCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP-DGLEP-E-DDR 94 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~-~~~ 94 (471)
||||+.-=-+. |---+.+|+++|++ +|+|+++.+...+.-.-.+. +....++...+. ++... . .-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~si---------t~~~pl~~~~~~~~~~~~~~~~v~ 69 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSI---------TIYEPIIIKEVKLEGINSKAYSIS 69 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccc---------cCCCCeEEEeeccCCCCccEEEEC
Confidence 46666532211 22237788999975 68999999887766443321 222345555443 10000 0 001
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEEC----------CCcc---hHHHHHHHcCCceEEEeC
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIAD----------VTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D----------~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
..+.+ |- .--+..+.. .+||+||+. .+++ +|+.-|...|||.|.+|.
T Consensus 70 GTPaD-cV----------~lal~~l~~----~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 70 GTPAD-CV----------RVALDKLVP----DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred CcHHH-HH----------HHHHHHhcC----CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 11211 11 111222222 589999964 2333 566777899999999875
No 161
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=90.07 E-value=1.3 Score=40.24 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=64.4
Q ss_pred cEEEEEcCCCcc-cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 18 VHVLLVSFPAQG-HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 18 ~~Il~~~~~~~G-H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
||||+.- --| |.--+.+|+++|. .+++|+++.+...+.-+-.+. +....++...+.... ..-...
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~sl---------Tl~~Plr~~~~~~~~--~av~GT 66 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGASHSL---------TLHEPLRVRQVDNGA--YAVNGT 66 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccccccc---------ccccCceeeEeccce--EEecCC
Confidence 3665543 233 4445778888888 999999999988876554332 222345544443300 000112
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC----------Cc---chHHHHHHHcCCceEEEeCch
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV----------TF---GWALQVAAKLELKKASIYTSA 158 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~----------~~---~~~~~~A~~lgiP~v~~~~~~ 158 (471)
+.+ |-.+ .+..++++ .+||+||+.. .+ .+|+.=|..+|||.|.+|...
T Consensus 67 PaD-CV~l------al~~l~~~-------~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 67 PAD-CVIL------GLNELLKE-------PRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred hHH-HHHH------HHHHhccC-------CCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 221 1111 13344433 6799998643 22 256677889999999987643
No 162
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=22 Score=33.92 Aligned_cols=127 Identities=11% Similarity=-0.062 Sum_probs=75.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
++.+++++..|--||--.|.-=|..|++.|.+|.+++-.......+- ...++|+++.++..-.......
T Consensus 11 ~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l-----------~~hprI~ih~m~~l~~~~~~p~ 79 (444)
T KOG2941|consen 11 KKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL-----------LNHPRIRIHGMPNLPFLQGGPR 79 (444)
T ss_pred ccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH-----------hcCCceEEEeCCCCcccCCCch
Confidence 46789999999999999999999999999999999876554332211 2246899999875432221111
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCC-cchHHHHH----HHcCCceEEEeCchHHH
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVT-FGWALQVA----AKLELKKASIYTSAPGI 161 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~-~~~~~~~A----~~lgiP~v~~~~~~~~~ 161 (471)
-..-.++.+. .....+-.+... .++|.+++-.- +.....+| ...|-.+++=|....+.
T Consensus 80 ~~~l~lKvf~-Qfl~Ll~aL~~~-------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 80 VLFLPLKVFW-QFLSLLWALFVL-------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhHHHHHH-HHHHHHHHHHhc-------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1111122221 111122233332 68888876543 33444444 44466777777665554
No 163
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=88.93 E-value=4.9 Score=36.71 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=60.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC--CCCCCCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD--GLEPEDDRK 95 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~ 95 (471)
||||+.-=-+. |---+.+|+++|++ +|+|+++.+...+.-.-.+. +....++...+.. +...-.-..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ai---------t~~~pl~~~~~~~~~~~~~y~v~G 69 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAI---------TIRVPLWAKKVFISERFVAYATTG 69 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccc---------cCCCCceEEEeecCCCccEEEECC
Confidence 36665542222 33447788889975 68999999987766544331 1222455544421 110000111
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEEC----------CCcc---hHHHHHHHcCCceEEEeC
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIAD----------VTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D----------~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
.+.+ |- .--+..+.. .+||+||+. .+++ +|+.-|..+|||.|.+|.
T Consensus 70 TPaD-cV----------~lal~~~~~----~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 70 TPAD-CV----------KLGYDVIMD----KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred cHHH-HH----------HHHHHhhcc----CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 2211 11 111222222 589999964 3333 456677889999999985
No 164
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=88.92 E-value=3.6 Score=36.20 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
+.||++.+.++-.|-....-++..|..+|++|++++..-..+.+.+.-. ..+..++.+.-.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~----------~~~pd~v~lS~~~~------- 146 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK----------KEKPLMLTGSALMT------- 146 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH----------HcCCCEEEEccccc-------
Confidence 4699999999999999999999999999999999988776665554421 12444544422111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceE
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKA 152 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v 152 (471)
...+.++++++.+++.+...++-++|..... ....|+++|.=.+
T Consensus 147 ----------~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~ 190 (197)
T TIGR02370 147 ----------TTMYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVY 190 (197)
T ss_pred ----------cCHHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEE
Confidence 1122345566666664311346677776554 3457777776443
No 165
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=88.80 E-value=5.7 Score=36.54 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=60.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC-CCCCCCCccc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD-GLEPEDDRKD 96 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~ 96 (471)
||||+.-=-+. |---+.+|+++|.+.| +|+++.+...+.-.-.+. +....++...+.. +...-.-...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~ai---------T~~~pl~~~~~~~~~~~~y~v~GT 69 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGI---------TLHKPLRMYEVDLCGFKVYATSGT 69 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccc---------cCCCCcEEEEeccCCcceEEeCCC
Confidence 36555432222 4455788999998887 799998877665443321 2223555555431 1100001112
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEE----------C-CCcc---hHHHHHHHcCCceEEEeC
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIA----------D-VTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~----------D-~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
+.+ |-.+ -+..+ . .+||+||+ | ..++ +|+.-|..+|||.|.+|.
T Consensus 70 PaD-CV~l----------al~~l-~----~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 70 PSD-TIYL----------ATYGL-G----RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HHH-HHHH----------HHHhc-c----CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 221 1111 11222 2 68999995 3 2223 456677889999999985
No 166
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=88.55 E-value=0.73 Score=39.49 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHhcccCCCCeeEEEECCCcchHH-H--H-H-HHc-CCceEEEeC
Q 012083 108 MPGYLEELIQKINQQEEDEKITCVIADVTFGWAL-Q--V-A-AKL-ELKKASIYT 156 (471)
Q Consensus 108 ~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~-~--~-A-~~l-giP~v~~~~ 156 (471)
..+.+.+++++ .+||+||+...+.... . + . ..+ ++|++.+.+
T Consensus 77 ~~~~l~~~l~~-------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 77 FARRLIRLLRE-------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHHHhh-------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 33445555555 9999999998764333 1 1 1 224 588877655
No 167
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=88.36 E-value=2.2 Score=37.69 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
+.||++.+.++-.|-....-++..|..+|++|++++..-..+.+.+.-. ..+..++.+...+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~----------~~~~d~v~lS~~~-------- 143 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVK----------EHKPDILGLSALM-------- 143 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH----------HcCCCEEEEeccc--------
Confidence 4699999999999999999999999999999998876655444443311 1144444432211
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
....+.++++++.+++.+...++.++|..... ....++++|.=.+.
T Consensus 144 ---------~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 144 ---------TTTMGGMKEVIEALKEAGLRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred ---------cccHHHHHHHHHHHHHCCCCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 11223355566666653310145566666543 34578888765544
No 168
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=87.88 E-value=6.8 Score=35.80 Aligned_cols=111 Identities=15% Similarity=0.166 Sum_probs=61.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
||||+.-=-+. |.--+.+|+++|.+. |+|+++.+...+.-.-.+. +....+++..+.... ..-...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ai---------t~~~pl~~~~~~~~~--~~v~GTP 67 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSL---------TLTRPLRVEKVDNGF--YAVDGTP 67 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccc---------cCCCCeEEEEecCCe--EEECCcH
Confidence 36655432211 334477899999988 7999999987765544331 223356666552110 0001111
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECC----------Ccc---hHHHHHHHcCCceEEEeC
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADV----------TFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~----------~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
.+ ++.--+..+.. .+||+||+.. +++ +|+.-|...|||.|.+|.
T Consensus 68 aD-----------cV~~gl~~l~~----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 68 TD-----------CVHLALNGLLD----PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred HH-----------HHHHHHHhhcc----CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 11 11111222322 5899998643 222 456777889999999875
No 169
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=87.78 E-value=1.9 Score=43.46 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=68.0
Q ss_pred eccchh---hhhccCcceeeee---ccCc-chhhHhhhcCCc----eeecccccchhhhHHHHHhhhcceeeecCCCCCC
Q 012083 350 KWAPQE---KVLAHPSVACYLT---HCGW-NSTMEGISMGVP----FLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGI 418 (471)
Q Consensus 350 ~~vpq~---~lL~~~~~~~~It---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~ 418 (471)
+.+++. .+++.+++ ++. +-|. .++.||+++|+| +|+--+.+- + +. ++-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~---~~-l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----A---QE-LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----h---HH-hCCcEEECC-----
Confidence 556665 45766666 665 3464 478899999999 655543321 1 12 344677754
Q ss_pred cCHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 419 IGRHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 419 ~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.+.++++++|.++|+++ +-+++.+++.+.+.+ -+...-.+.|++++.
T Consensus 407 ~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALTMPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 57899999999999864 566677777777654 366677778887764
No 170
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=87.30 E-value=3.3 Score=36.28 Aligned_cols=117 Identities=17% Similarity=0.049 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC--CcccHHHHHHHHHhh
Q 012083 30 HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED--DRKDEAKMTRSISKV 107 (471)
Q Consensus 30 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 107 (471)
++.-.+.+...+.++|-+|.|+++......+.+.-+... +-.++ ...+-.+- ........+..+...
T Consensus 41 ~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~---------~~~~i--~~rw~~G~LTN~~~~~~~~~~~~~~ 109 (193)
T cd01425 41 KLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT---------GSFYV--NGRWLGGTLTNWKTIRKSIKRLKKL 109 (193)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc---------CCeee--cCeecCCcCCCHHHHHHHHHHHHHH
Confidence 344445555666778999999999865444433322111 22221 11111110 111111111111111
Q ss_pred ccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchH
Q 012083 108 MPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAP 159 (471)
Q Consensus 108 ~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 159 (471)
-...++..+..++..- ..||+||+-...- .+..=|.++|||.|.+..+..
T Consensus 110 ~~~~~~k~~~g~~~~~--~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 110 EKEKLEKNLGGIKDMF--RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred HHHHHHHhcccccccc--cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 1122333333333322 7899988655332 778899999999999986654
No 171
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.37 E-value=1.2 Score=36.14 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=37.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
|||++...|+.+=+. ...+.++|.++|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 589888888877766 999999999999999999998888777765
No 172
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.01 E-value=30 Score=32.34 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=58.2
Q ss_pred CCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhh--HHHHHhhhcceeeecCCCCCCcC
Q 012083 344 DFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYI--KSCICDDWKIGLWLEPDDNGIIG 420 (471)
Q Consensus 344 ~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n--a~~v~~~~G~G~~~~~~~~~~~~ 420 (471)
+|..+. .|-...++|.++++ .|--.|. .+-+++=.|||+|.+|-.+-|+.- |.|=.+-+|..+.+-. -.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PE 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----Cc
Confidence 344433 55555566655554 3333332 223457789999999999888654 4444443577777743 22
Q ss_pred HhHHHHHHHHHhCcHHHHHHHH-HHHHHHHH
Q 012083 421 RHEIKRKVDELLSNDVVRKNAL-KLKELAQK 450 (471)
Q Consensus 421 ~~~l~~~i~~ll~~~~~~~~a~-~l~~~~~~ 450 (471)
...-..+.+++|.|+++..+++ .=.+++.+
T Consensus 366 aq~a~~~~q~ll~dp~r~~air~nGqrRiGq 396 (412)
T COG4370 366 AQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred hhhHHHHHHHHhcChHHHHHHHhcchhhccC
Confidence 3333444455999999888887 33445544
No 173
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.00 E-value=15 Score=30.97 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=57.3
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE---eCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFV---TTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
-|.+.+.++.|-....+++|-+.+.+|++|.|+ -........... ...+++.+.....+..... .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l----------~~l~~v~~~~~g~~~~~~~--~ 71 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKAL----------ERLPNIEIHRMGRGFFWTT--E 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHH----------HhCCCcEEEECCCCCccCC--C
Confidence 367778889999999999999999999999984 332111111111 1123778877655432221 1
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG 138 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~ 138 (471)
+..+.... ........++.+.. .++|+||.|-...
T Consensus 72 ~~~~~~~~-a~~~~~~a~~~~~~-------~~~dLlVLDEi~~ 106 (159)
T cd00561 72 NDEEDIAA-AAEGWAFAKEAIAS-------GEYDLVILDEINY 106 (159)
T ss_pred ChHHHHHH-HHHHHHHHHHHHhc-------CCCCEEEEechHh
Confidence 11111111 11222223333333 7999999998764
No 174
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=85.11 E-value=4 Score=41.89 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=55.3
Q ss_pred CCcEEEeccc--hh-hhhccCcceeeeecc---CcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 344 DFGKMVKWAP--QE-KVLAHPSVACYLTHC---GWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 344 ~nv~~~~~vp--q~-~lL~~~~~~~~ItHg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.++.+.++.. +. .++.+.++ +|.=+ |.++..||+.+|+|+| .......|.. ..=|..++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC-----
Confidence 5677778888 32 67755554 87665 6779999999999999 2222333444 34555553
Q ss_pred CcCHhHHHHHHHHHhCcHHHHHH
Q 012083 418 IIGRHEIKRKVDELLSNDVVRKN 440 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~~~~~~ 440 (471)
+.++|.+++..+|.+++--++
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~ 494 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNY 494 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHH
Confidence 668999999999999843333
No 175
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=85.11 E-value=4 Score=35.38 Aligned_cols=106 Identities=8% Similarity=-0.027 Sum_probs=53.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCe--EEE-EeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIK--VTF-VTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR 94 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~--Vt~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (471)
|||+|+..++. ..+..+.++|.+++|+ +.. ++.++.......... .++....+...
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~-----------~~~~~~~~~~~------- 59 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK-----------NGIPAQVADEK------- 59 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH-----------TTHHEEEHHGG-------
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc-----------CCCCEEecccc-------
Confidence 69999976655 4566778899999997 444 444433332221110 12222221100
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc-hHHHHHHHcCCceEEEeCc
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG-WALQVAAKLELKKASIYTS 157 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~-~~~~~A~~lgiP~v~~~~~ 157 (471)
. +.. .....+.+.+.+++ .+||++|+-.+.. -...+-+.....++-++++
T Consensus 60 -~----~~~-~~~~~~~~~~~l~~-------~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 60 -N----FQP-RSENDEELLELLES-------LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -G----SSS-HHHHHHHHHHHHHH-------TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -C----CCc-hHhhhhHHHHHHHh-------hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 0 000 01112223344444 8999998876543 4455557777777777664
No 176
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=84.44 E-value=2.5 Score=32.14 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC-CcccHHHHHHHHHhhccHHH
Q 012083 34 LMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED-DRKDEAKMTRSISKVMPGYL 112 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 112 (471)
++.+|+.|.+.|+++ ++++.-...+.+. |+....+.......+ ..++.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~--------------Gi~~~~v~~~~~~~~~~~g~~--------------- 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH--------------GIEVTEVVNKIGEGESPDGRV--------------- 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT--------------T--EEECCEEHSTG-GGTHCH---------------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc--------------CCCceeeeeecccCccCCchh---------------
Confidence 578999999999664 5566677777777 777554432211110 01111
Q ss_pred HHHHHHHhcccCCCCeeEEEECCCcchH---------HHHHHHcCCceE
Q 012083 113 EELIQKINQQEEDEKITCVIADVTFGWA---------LQVAAKLELKKA 152 (471)
Q Consensus 113 ~~ll~~l~~~~~~~~pD~vV~D~~~~~~---------~~~A~~lgiP~v 152 (471)
++++.++. .+.|+||........ ..+|...+||++
T Consensus 51 -~i~~~i~~----~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 -QIMDLIKN----GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp -HHHHHHHT----TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred -HHHHHHHc----CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 33344444 899999977644311 467889999986
No 177
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.43 E-value=16 Score=31.81 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch---hhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC---ERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDD 93 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (471)
+-.|.+++..+.|=....+++|-+.+.+|++|.++-.-... ...... ...+++.+.....+.....
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l----------~~l~~v~~~~~g~~~~~~~- 90 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL----------EFGGGVEFHVMGTGFTWET- 90 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH----------hcCCCcEEEECCCCCcccC-
Confidence 45789999999999999999999999999999987432211 111111 1123788887765432221
Q ss_pred cccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc
Q 012083 94 RKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG 138 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~ 138 (471)
.+..+-.. .........++.+.. .++|+||.|-...
T Consensus 91 -~~~~e~~~-~~~~~~~~a~~~l~~-------~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 -QDRERDIA-AAREGWEEAKRMLAD-------ESYDLVVLDELTY 126 (191)
T ss_pred -CCcHHHHH-HHHHHHHHHHHHHhC-------CCCCEEEEehhhH
Confidence 11111111 112222233333333 8999999998764
No 178
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=84.35 E-value=3.4 Score=38.40 Aligned_cols=120 Identities=11% Similarity=0.086 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC---CC-CCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD---GL-EPE 91 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-~~~ 91 (471)
+.-.|.+...|+-|--.-.-+|.+.|.++||+|-++..++....--.+ ...+.++...+.. .+ .+.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs----------iLGDRiRM~~~~~~~~vFiRs~ 119 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS----------ILGDRIRMQRLAVDPGVFIRSS 119 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc----------ccccHhhHHhhccCCCeEEeec
Confidence 345789999999999999999999999999999998776654432211 1112233322210 00 001
Q ss_pred CCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCc
Q 012083 92 DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTS 157 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~ 157 (471)
.....+.. .....++.+..+.. ..+|+||++.... .=..+++...+-.+.+.+.
T Consensus 120 ~srG~lGG--------lS~at~~~i~~ldA----aG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 120 PSRGTLGG--------LSRATREAIKLLDA----AGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred CCCccchh--------hhHHHHHHHHHHHh----cCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 11111111 11122233333333 8999999997765 2356777777666665443
No 179
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.82 E-value=12 Score=35.63 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=34.2
Q ss_pred cEEEEEcC-CCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 012083 18 VHVLLVSF-PAQGHVASLMKLAHRLADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 18 ~~Il~~~~-~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~ 60 (471)
+||+|++. |+-|=..-..++|-.|++.|.+|.+++++.....-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~ 45 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLG 45 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchH
Confidence 57777764 56799889999999999999998888887665543
No 180
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=83.79 E-value=6.9 Score=36.02 Aligned_cols=100 Identities=14% Similarity=0.049 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhC---CCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhc
Q 012083 32 ASLMKLAHRLADC---RIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVM 108 (471)
Q Consensus 32 ~p~~~La~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (471)
--+.+|+++|.+. |++|+++.+...+.-.-.+. +....++...+.++. -.-...+.+ |-.+.
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai---------T~~~pl~~~~~~~~~--yav~GTPaD-CV~la--- 78 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI---------SYTHPMMIAELGPRR--FAAEGSPAD-CVLAA--- 78 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc---------cCCCCeEEEEeCCCe--EEEcCchHH-HHHHH---
Confidence 3466777777663 47999999887765544332 223466776654211 000112221 11111
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEEC----------CCcc---hHHHHHHHcCCceEEEeC
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIAD----------VTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D----------~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
+..++.. .+||+||+. .+++ +|+.-|..+|||.|.+|.
T Consensus 79 ---l~~~~~~-------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 79 ---LYDVMKD-------APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred ---HHHhcCC-------CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 2222221 479999963 3333 456777899999999985
No 181
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=83.73 E-value=11 Score=30.12 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=37.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
||++.+.++-.|..-..-++.-|...|++|.+.......+.+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~ 43 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIV 43 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 6889999999999999999999999999999998865544443
No 182
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=83.65 E-value=38 Score=31.57 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=56.4
Q ss_pred CCcEEEeccch---hhhhccCcceeeeec---cCcc-hhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCC
Q 012083 344 DFGKMVKWAPQ---EKVLAHPSVACYLTH---CGWN-STMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDN 416 (471)
Q Consensus 344 ~nv~~~~~vpq---~~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~ 416 (471)
+++.+.+++|+ ..+++.+++ ++.. .|.| ++.||+++|+|++.... ......+.. .+.|....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~~-~~~g~~~~---- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVED-GETGLLVP---- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhcC-CCceEecC----
Confidence 67777899882 245655555 5555 3554 45999999999976643 323333333 23466332
Q ss_pred CCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 417 GIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 417 ~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
. ...+++.+++..++++.+.+++..+
T Consensus 326 ~-~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 326 P-GDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred C-CCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 2679999999999999854555444
No 183
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=83.49 E-value=7.8 Score=34.87 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=25.9
Q ss_pred CCeeEEEE-CCCcc-hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIA-DVTFG-WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
.-||++++ |...- -|..=|.++|||+|.+.-+...
T Consensus 155 ~~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 155 GLPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 34998764 54433 7788899999999998766544
No 184
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=83.16 E-value=7.4 Score=35.65 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=56.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|||+++...+-|+ .|++.|.++|+ |.+-+.-++........ ..+..... +...
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~~~~~-----------~~~~~v~~--------G~lg-- 53 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGELLKPE-----------LPGLEVRV--------GRLG-- 53 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhhhccc-----------cCCceEEE--------CCCC--
Confidence 5888887666554 68999999999 66554444544443210 01112211 0000
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH-------HHHHHHcCCceEEEe
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA-------LQVAAKLELKKASIY 155 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~-------~~~A~~lgiP~v~~~ 155 (471)
..+.+.+++++ .++|+|| |..-++| ..+|+.+|||++.+-
T Consensus 54 ----------~~~~l~~~l~~-------~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 54 ----------DEEGLAEFLRE-------NGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred ----------CHHHHHHHHHh-------CCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 12234555666 8999988 6554443 578899999999974
No 185
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=83.14 E-value=5.9 Score=43.05 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=62.1
Q ss_pred hhhccCcceeeeec---cCcc-hhhHhhhcCCc---eeecccccchhhhHHHHHhhhc-ceeeecCCCCCCcCHhHHHHH
Q 012083 356 KVLAHPSVACYLTH---CGWN-STMEGISMGVP---FLCWPWGHDHLYIKSCICDDWK-IGLWLEPDDNGIIGRHEIKRK 427 (471)
Q Consensus 356 ~lL~~~~~~~~ItH---gG~~-s~~eal~~GvP---~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~~~~~~l~~~ 427 (471)
.+++.+++ |+.- -|+| +..|++++|+| +++++-+. ..+. . +| -|+.+++ .+.++++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~---~-l~~~allVnP-----~D~~~lA~A 436 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ---S-LGAGALLVNP-----WNITEVSSA 436 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh---h-hcCCeEEECC-----CCHHHHHHH
Confidence 67766777 6644 4766 66799999999 44554221 1222 2 33 4777754 588999999
Q ss_pred HHHHhC-cH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 428 VDELLS-ND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 428 i~~ll~-~~-~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
|.++|+ ++ +-+++.+++.+.+++. +...-.+.|++++.
T Consensus 437 I~~aL~m~~~er~~r~~~~~~~v~~~-----~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 437 IKEALNMSDEERETRHRHNFQYVKTH-----SAQKWADDFMSELN 476 (797)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhC-----CHHHHHHHHHHHHH
Confidence 999998 44 4555566666666543 45555667766653
No 186
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=83.05 E-value=2.3 Score=37.16 Aligned_cols=45 Identities=11% Similarity=-0.010 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~ 60 (471)
+.+||++-..|+.|=+.-...+++.|.++||+|.++.++.....+
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 457888888776666655789999999999999999987765443
No 187
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=82.98 E-value=5.9 Score=36.24 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=56.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
++|+++...+-|+ .||+.|.++|+.|++-+...+.. .... +..... +...
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~-~~~~--------------~~~v~~--------G~l~-- 52 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG-PADL--------------PGPVRV--------GGFG-- 52 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC-cccC--------------CceEEE--------CCCC--
Confidence 7888887666654 68899999999888765544443 1111 222211 0000
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH-------HHHHHHcCCceEEEe
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA-------LQVAAKLELKKASIY 155 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~-------~~~A~~lgiP~v~~~ 155 (471)
..+.+.+++++ .+.++|| |..-++| ..+|+.+|||++.+.
T Consensus 53 ----------~~~~l~~~l~~-------~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 53 ----------GAEGLAAYLRE-------EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred ----------CHHHHHHHHHH-------CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 12234555666 8999987 6554433 478899999999974
No 188
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=82.68 E-value=23 Score=33.56 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=34.4
Q ss_pred cEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
||++|+. -|+-|=..-..++|-.++++|++|.+++++.....-.
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHSLSD 45 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCccHHH
Confidence 3665555 5677999999999999999999999999988765433
No 189
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=82.20 E-value=6.2 Score=39.92 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=60.2
Q ss_pred Eeccchh---hhhccCcceeeee---ccCc-chhhHhhhcCCc----eeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 349 VKWAPQE---KVLAHPSVACYLT---HCGW-NSTMEGISMGVP----FLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 349 ~~~vpq~---~lL~~~~~~~~It---HgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
.+++++. .+++.+++ ||. +-|. .++.||+++|+| +|+--..+ - .+. ..-|..+++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~------~~~-~~~g~lv~p---- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A------AEE-LSGALLVNP---- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c------hhh-cCCCEEECC----
Confidence 3677765 46766776 663 3454 477999999999 44332221 0 011 133666644
Q ss_pred CcCHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 012083 418 IIGRHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQI 469 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~ 469 (471)
-+.++++++|.++|+++ +.+++.++..+.+.+ -+...-.+.+++++
T Consensus 412 -~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 412 -YDIDEVADAIHRALTMPLEERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred -CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 47799999999999875 333333333444332 35556666777665
No 190
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=82.10 E-value=5.7 Score=32.57 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 15 KTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 15 ~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+++.||++.+.+.-||-.-.--++++|+..|.+|...+.-...+.+..
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~ 57 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVR 57 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHH
Confidence 367999999999999999999999999999999998766555444433
No 191
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=81.84 E-value=16 Score=27.32 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=46.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccHHHH
Q 012083 34 LMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLE 113 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (471)
++.+++.|.+.|++| ++|. .....+++. |+....+.... .+.. +
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~-gTa~~L~~~--------------Gi~~~~~~~ki--~~~~---------------~--- 45 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG-GTAKFLREA--------------GLPVKTLHPKV--HGGI---------------L--- 45 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc-HHHHHHHHC--------------CCcceeccCCC--CCCC---------------H---
Confidence 468899999999998 3444 455666665 65542111000 0000 1
Q ss_pred HHHHHHhcccCCCCeeEEEECCCc---------chHHHHHHHcCCceE
Q 012083 114 ELIQKINQQEEDEKITCVIADVTF---------GWALQVAAKLELKKA 152 (471)
Q Consensus 114 ~ll~~l~~~~~~~~pD~vV~D~~~---------~~~~~~A~~lgiP~v 152 (471)
.+++.++. .++|+||..... ..-...|...+||++
T Consensus 46 ~i~~~i~~----g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKN----GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcC----CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 13344444 899999985431 123467889999986
No 192
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=81.77 E-value=3.4 Score=41.53 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCcccHHHH------------HHHHHHHHhCCCeEEEEeCCcc
Q 012083 16 TNVHVLLVSFPAQGHVASL------------MKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~------------~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
+.+||++...|+.-.+.|. .+||+++..+|++||+++.+..
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 5679999999998888775 4899999999999999997653
No 193
>PRK05973 replicative DNA helicase; Provisional
Probab=80.98 E-value=13 Score=33.79 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=37.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
-=+++...|+.|=..-++.++...+++|+.|.|++.+...+.+.+
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 346778888999999999999999889999999998877655544
No 194
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=80.31 E-value=57 Score=31.37 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=51.2
Q ss_pred cCCHHHHHHHH-HHHHh-CCCCEEEEEcCCCCCCCCCCCCchhHHh--hCCCcEEEeccchh---hhhccCcceeeeecc
Q 012083 298 KLSQQQFNELA-LGLEL-AGQPFLCGVRPGFINGSSTNNPDGLVAK--VADFGKMVKWAPQE---KVLAHPSVACYLTHC 370 (471)
Q Consensus 298 ~~~~~~~~~~~-~al~~-~~~~~i~~~~~~~~~~~~~~lp~~~~~~--~~~nv~~~~~vpq~---~lL~~~~~~~~ItHg 370 (471)
....+.+..++ +.+.+ ...+|++.-.++ +...+. ...|+ +.++|.+.+-+|++ ++|...++ |++-.
T Consensus 207 rKGiDll~~iIp~vc~~~p~vrfii~GDGP----k~i~le-e~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntS 279 (426)
T KOG1111|consen 207 RKGIDLLLEIIPSVCDKHPEVRFIIIGDGP----KRIDLE-EMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTS 279 (426)
T ss_pred ccchHHHHHHHHHHHhcCCCeeEEEecCCc----ccchHH-HHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccH
Confidence 34455666644 44553 345777655443 111121 22222 47888999999986 56766666 66543
Q ss_pred C----cchhhHhhhcCCceeec
Q 012083 371 G----WNSTMEGISMGVPFLCW 388 (471)
Q Consensus 371 G----~~s~~eal~~GvP~l~~ 388 (471)
= .-++.||..||.|++..
T Consensus 280 lTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 280 LTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHHHhCCCEEEEe
Confidence 2 34678999999999875
No 195
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=80.08 E-value=6.1 Score=37.56 Aligned_cols=35 Identities=20% Similarity=0.049 Sum_probs=26.5
Q ss_pred CCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIADVTFG--WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+-...- .+..=|.++|||+|.+.-+...
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 4799877544322 7888999999999999766543
No 196
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=79.98 E-value=30 Score=29.66 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=57.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE---eCC-cchh--hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFV---TTE-FICE--RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~---~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
-|.+++..+.|-..-.+.+|-+.+.+|++|.++ =.. ...+ .+++. ++.+.....++....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--------------~~~~~~~g~g~~~~~ 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--------------GVEFQVMGTGFTWET 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--------------CcEEEECCCCCeecC
Confidence 477777899999999999999999999999655 332 1111 12211 677777765543221
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG 138 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~ 138 (471)
.+..+.... ........++.+.. .++|+||.|-...
T Consensus 73 --~~~~~~~~~-~~~~~~~a~~~l~~-------~~~DlvVLDEi~~ 108 (173)
T TIGR00708 73 --QNREADTAI-AKAAWQHAKEMLAD-------PELDLVLLDELTY 108 (173)
T ss_pred --CCcHHHHHH-HHHHHHHHHHHHhc-------CCCCEEEehhhHH
Confidence 111111111 22222233344433 8999999998764
No 197
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=79.80 E-value=4.3 Score=38.72 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=33.3
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
|.+.+|||+++..|+.|= .+|..|++.||+|+++.... .+.+...
T Consensus 1 ~~~~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CCCcCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHHHhC
Confidence 444568999998887774 46788999999999998865 3444433
No 198
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=79.55 E-value=0.98 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCcccHHH------------HHHHHHHHHhCCCeEEEEeCCc
Q 012083 17 NVHVLLVSFPAQGHVAS------------LMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p------------~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
.+||++...|+.-++.| -..||+++..+||+||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 46777777776666555 4589999999999999999984
No 199
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=79.45 E-value=11 Score=33.54 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=61.3
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCC---cchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC-
Q 012083 18 VHVLLVSFP--AQGHVASLMKLAHRLADCRIKVTFVTTE---FICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE- 91 (471)
Q Consensus 18 ~~Il~~~~~--~~GH~~p~~~La~~L~~rGh~Vt~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 91 (471)
.+|++++.+ +-|-..-..+|+-+|+.+|+.|.++-.. .+.+.+... ...+.| .+-+.+...
T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGl------------E~RiVY-d~vdVi~g~~ 68 (272)
T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGL------------ENRIVY-DLVDVIEGEA 68 (272)
T ss_pred ceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcc------------cceeee-eehhhhcCcc
Confidence 577777776 6689999999999999999999988554 345555422 012222 221111111
Q ss_pred ---------CCcccHH----HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCC
Q 012083 92 ---------DDRKDEA----KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVT 136 (471)
Q Consensus 92 ---------~~~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~ 136 (471)
....++. .-.+.--....+.++.+++++++ ..+|.||+|.-
T Consensus 69 ~l~QALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~----~~fDyIi~DsP 122 (272)
T COG2894 69 TLNQALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA----MDFDYIIIDSP 122 (272)
T ss_pred chhhHhhccccCCceEecccccccCcccCCHHHHHHHHHHHHh----cCCCEEEecCc
Confidence 1111111 00111122346678888888887 78999999954
No 200
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=79.16 E-value=17 Score=36.50 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.1
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||++|.... ...+|.++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 79999998853 6789999999998865
No 201
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=78.86 E-value=16 Score=33.17 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=28.3
Q ss_pred EEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 19 HVLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 19 ~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
.|++.+ -|+-|-..-..+||..|++.|++|..+=-.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 343333 457799999999999999999999987443
No 202
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=78.70 E-value=12 Score=33.39 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+.||++.+.++-.|-....=++..|..+|++|++++..-..+.+.+.
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 47999999999999999999999999999999999877655544443
No 203
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=78.62 E-value=7 Score=42.16 Aligned_cols=107 Identities=13% Similarity=0.054 Sum_probs=64.2
Q ss_pred EEeccchh---hhhccCcceeeeec---cC-cchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcC
Q 012083 348 MVKWAPQE---KVLAHPSVACYLTH---CG-WNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIG 420 (471)
Q Consensus 348 ~~~~vpq~---~lL~~~~~~~~ItH---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~ 420 (471)
+.+++++. .+++.+++ |+.- -| ...+.|++++|+|-...|...+- +-...+ +.-|+.+++ .+
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~---~G~~~~-l~~~llv~P-----~d 414 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEM---AGAAAE-LAEALLVNP-----ND 414 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecc---cchhHH-hCcCeEECC-----CC
Confidence 44778866 56766666 6653 35 44788999997752222221111 111122 333777754 47
Q ss_pred HhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 421 RHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 421 ~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.++++++|.++|.++ +.+++.+++.+.+++ -+...-.+.|++.+.
T Consensus 415 ~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 415 IEGIAAAIKRALEMPEEEQRERMQAMQERLRR-----YDVHKWASDFLDELR 461 (726)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 899999999999854 555556555555543 356666667776654
No 204
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.57 E-value=8.5 Score=37.79 Aligned_cols=47 Identities=23% Similarity=0.241 Sum_probs=41.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+..|+++..-+.|-..-+-.||+.|.++|+.|.+++.+-+++..-+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ 146 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ 146 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH
Confidence 56788888889999999999999999999999999999888765443
No 205
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.55 E-value=6.5 Score=37.20 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
++--|+|+...+.|-..-.-.||+.|.+.|+.|.++..+.|+.-..+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiE 184 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIE 184 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHH
Confidence 35678999999999999999999999999999999999999876544
No 206
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=78.40 E-value=16 Score=28.01 Aligned_cols=28 Identities=11% Similarity=-0.039 Sum_probs=21.5
Q ss_pred CCeeEEEECCCcc---hHHHHHHHcCCceEE
Q 012083 126 EKITCVIADVTFG---WALQVAAKLELKKAS 153 (471)
Q Consensus 126 ~~pD~vV~D~~~~---~~~~~A~~lgiP~v~ 153 (471)
.++|+||+.+-.+ ...+..+..|||++.
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 8999999987655 446777888999875
No 207
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=77.26 E-value=25 Score=31.00 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=23.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC--CeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCR--IKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rG--h~Vt~~~~~ 54 (471)
|||+++..+..+-+. ++.+++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 899999977754444 5666677654 778765444
No 208
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.15 E-value=9.4 Score=33.22 Aligned_cols=99 Identities=17% Similarity=0.176 Sum_probs=49.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcc-hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFI-CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDR 94 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 94 (471)
.-|.|.+ .+-|-++-+.+|+++|.++ |+.|.+-++... .+.+.+... +.+....+|-+
T Consensus 22 ~~iWiHa-~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-----------~~v~~~~~P~D------- 82 (186)
T PF04413_consen 22 PLIWIHA-ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-----------DRVDVQYLPLD------- 82 (186)
T ss_dssp T-EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-----------GG-SEEE---S-------
T ss_pred CcEEEEE-CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-----------CCeEEEEeCcc-------
Confidence 3455554 6789999999999999987 898888776443 333333210 12222223211
Q ss_pred ccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH--HHHHHHcCCceEEEe
Q 012083 95 KDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA--LQVAAKLELKKASIY 155 (471)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~--~~~A~~lgiP~v~~~ 155 (471)
....++.+++. ++||++|.-....|. ...|++.|||++.+.
T Consensus 83 -------------~~~~~~rfl~~-------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 83 -------------FPWAVRRFLDH-------WRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp -------------SHHHHHHHHHH-------H--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred -------------CHHHHHHHHHH-------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 12224566777 899998876666654 456778899999975
No 209
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.02 E-value=39 Score=29.87 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=65.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
+=|++...|+.|-....-.||++|.+++|+|..++..... ++..-+ .+ .-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~--------------------~i~~DE---sl------pi~ 52 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR--------------------GILWDE---SL------PIL 52 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh--------------------heeccc---cc------chH
Confidence 5577888999999999999999999999999876553221 222111 00 001
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcch------HHHHHHHcCCceEEEeCchHHHHHH
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGW------ALQVAAKLELKKASIYTSAPGILAM 164 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~------~~~~A~~lgiP~v~~~~~~~~~~~~ 164 (471)
. +.+.....+....++.+. .+--+||+|..-.. ....|..+..++.++..-.+..+..
T Consensus 53 k---e~yres~~ks~~rlldSa------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~ 116 (261)
T COG4088 53 K---EVYRESFLKSVERLLDSA------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL 116 (261)
T ss_pred H---HHHHHHHHHHHHHHHHHH------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH
Confidence 1 111111222222233321 34458889987552 2457889999998887765554433
No 210
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=76.95 E-value=4.8 Score=39.31 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=64.4
Q ss_pred CCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCC--CCCCc
Q 012083 343 ADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPD--DNGII 419 (471)
Q Consensus 343 ~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~--~~~~~ 419 (471)
.+++..+ +...-.++|..+++ +||--.. .+.|.+..++|++....-.|..... .|.-...... ....-
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDySS-i~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDYSS-IIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS-T-HHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEechh-HHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeC
Confidence 4566665 44456789977777 9999854 8889999999999887655554221 1222221100 01123
Q ss_pred CHhHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 012083 420 GRHEIKRKVDELLSND-VVRKNALKLKELAQKSVTKEGSSSKNLEYF 465 (471)
Q Consensus 420 ~~~~l~~~i~~ll~~~-~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~ 465 (471)
+.++|.++|..+++++ .++++-++..+++-. ..+|.++.+.++.+
T Consensus 322 ~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 322 NFEELIEAIENIIENPDEYKEKREKFRDKFFK-YNDGNSSERIVNYI 367 (369)
T ss_dssp SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHST-T--S-HHHHHHHHH
T ss_pred CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHH
Confidence 6799999999999876 456667777777754 24455555444444
No 211
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=76.89 E-value=61 Score=30.59 Aligned_cols=81 Identities=10% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCcEEE-eccc---hhhhhccCcceeeeec--cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 344 DFGKMV-KWAP---QEKVLAHPSVACYLTH--CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 344 ~nv~~~-~~vp---q~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
+++.+. +++| +..+|+.++++.|+|+ =|.||++-.++.|+|+++-- +-+.|.. +.+ .|+-+-.+. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~---d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTG---D 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecC---C
Confidence 677765 7787 4589999999878776 48999999999999998763 3334433 344 377776554 6
Q ss_pred CcCHhHHHHHHHHHh
Q 012083 418 IIGRHEIKRKVDELL 432 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll 432 (471)
.++...+.++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 677777766644433
No 212
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=76.09 E-value=23 Score=33.72 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=24.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|||+|+..+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 599999766543 67778888899998866553
No 213
>PRK06849 hypothetical protein; Provisional
Probab=76.09 E-value=24 Score=34.78 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
++|+||+..... ...+.+++.|.++||+|+++.....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCch
Confidence 358888885333 3689999999999999999877643
No 214
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.95 E-value=21 Score=31.30 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICER 59 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 59 (471)
..|+|+...+-|=..-...||..++.+|.+|.+++.+.++.-
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 457888888999999999999999999999999999887543
No 215
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=75.86 E-value=5.5 Score=36.67 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+..++|...++.|=..=..+||.+|.++|+.|+|++.+++...+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 45899999999988888899999999889999999999998888754
No 216
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=75.72 E-value=59 Score=33.11 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=70.1
Q ss_pred cEEEeccchhh---hhccCcceeeee--ccCcchh-hHhhhcCC----ceeecccccchhhhHHHHHhhhcceeeecCCC
Q 012083 346 GKMVKWAPQEK---VLAHPSVACYLT--HCGWNST-MEGISMGV----PFLCWPWGHDHLYIKSCICDDWKIGLWLEPDD 415 (471)
Q Consensus 346 v~~~~~vpq~~---lL~~~~~~~~It--HgG~~s~-~eal~~Gv----P~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~ 415 (471)
+.+.+.+|+.+ +++-++| ++|| .-|+|-+ .|.++++. |+|.--+.+ |. ++ +.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC--
Confidence 34558888664 6666776 2333 4588855 49999987 444332221 11 44 555788865
Q ss_pred CCCcCHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 012083 416 NGIIGRHEIKRKVDELLSND--VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471 (471)
Q Consensus 416 ~~~~~~~~l~~~i~~ll~~~--~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 471 (471)
.+.++++++|.++|+.+ +-++|.+++.+.++.. ....=.+.|++++.+
T Consensus 433 ---~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~-----d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPKAEQQARMREMFDAVNYY-----DVQRWADEFLAAVSP 482 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhhh
Confidence 68899999999999986 5566777777776653 555557778877653
No 217
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=75.64 E-value=18 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCcccHHHHHHHHHHHHhCCCeEEEE
Q 012083 25 FPAQGHVASLMKLAHRLADCRIKVTFV 51 (471)
Q Consensus 25 ~~~~GH~~p~~~La~~L~~rGh~Vt~~ 51 (471)
.++.|-..-.+.|++.|+++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456788899999999999999999886
No 218
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=75.56 E-value=26 Score=27.64 Aligned_cols=87 Identities=21% Similarity=0.167 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhcc
Q 012083 30 HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMP 109 (471)
Q Consensus 30 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (471)
+-.-++.+++.|.+.|++|. +++...+.+.+. |+....+....... .. + .
T Consensus 11 dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L~~~--------------gi~~~~v~~~~~~~-~~-~------------~ 60 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKLY--ATEGTADFLLEN--------------GIPVTPVAWPSEEP-QN-D------------K 60 (116)
T ss_pred cchhHHHHHHHHHHCCCEEE--EccHHHHHHHHc--------------CCCceEeeeccCCC-CC-C------------c
Confidence 44567899999999999883 455666666665 55444432110000 00 0 1
Q ss_pred HHHHHHHHHHhcccCCCCeeEEEECCC---------cchHHHHHHHcCCceEE
Q 012083 110 GYLEELIQKINQQEEDEKITCVIADVT---------FGWALQVAAKLELKKAS 153 (471)
Q Consensus 110 ~~~~~ll~~l~~~~~~~~pD~vV~D~~---------~~~~~~~A~~lgiP~v~ 153 (471)
+.+.+++++ .++|+||.-.. ...-...|-.+|||++.
T Consensus 61 ~~i~~~i~~-------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAE-------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHc-------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 334455555 89999998432 12345678999999974
No 219
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=75.56 E-value=23 Score=35.35 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=26.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
.|+.+...+.. ..++++.|.+.|-+|..+++.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 37777776665 889999999999999988766
No 220
>PRK08506 replicative DNA helicase; Provisional
Probab=75.37 E-value=19 Score=36.59 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=35.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
|++...|+.|=..-++.+|...++.|+.|.|++.....+.+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 567778899999999999999888899999999887665554
No 221
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=75.22 E-value=4.1 Score=37.60 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=72.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHh-hhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIKES-RQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
+++...|+.|-..-++.+|..++.+ |+.|.+++.+...+.+..- ..... ++....+..+.-..+.....
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s---------~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLS---------GVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHH---------TSTHHHHHCCGCHHHHHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhh---------cchhhhhhccccCHHHHHHH
Confidence 5667788999999999999999987 6999999998766654332 11111 33211111110000000011
Q ss_pred HHHHHHHHh----------hccHHHHHHHHHHhcccCCCCeeEEEECCCcc--h-----------------HHHHHHHcC
Q 012083 98 AKMTRSISK----------VMPGYLEELIQKINQQEEDEKITCVIADVTFG--W-----------------ALQVAAKLE 148 (471)
Q Consensus 98 ~~~~~~~~~----------~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~-----------------~~~~A~~lg 148 (471)
......+.. .....+++.++.+.... .+.|+||+|.+.. . -..+|..++
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 170 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELN 170 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 111111110 01234556666665543 5889999998755 1 126889999
Q ss_pred CceEEEeCc
Q 012083 149 LKKASIYTS 157 (471)
Q Consensus 149 iP~v~~~~~ 157 (471)
||++.++..
T Consensus 171 i~vi~~sQl 179 (259)
T PF03796_consen 171 IPVIALSQL 179 (259)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEcccc
Confidence 999998753
No 222
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=74.91 E-value=4 Score=35.01 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=25.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
|||.++.- .|++- -.|+++...|||+||-++....+
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeChHh
Confidence 58877753 33332 35789999999999998875543
No 223
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=74.89 E-value=34 Score=26.64 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=54.7
Q ss_pred ccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhc
Q 012083 29 GHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVM 108 (471)
Q Consensus 29 GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (471)
++-.-++.+++.|.+.|+++. +++...+.+.+. |+....+.... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~--------------gi~~~~v~~~~------------------~~ 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA--------------GIPVEVVNKVS------------------EG 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc--------------CCeEEEEeecC------------------CC
Confidence 355678899999999999983 455566667665 66654431110 02
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCc-------chHHHHHHHcCCceEE
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTF-------GWALQVAAKLELKKAS 153 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~-------~~~~~~A~~lgiP~v~ 153 (471)
.+.+.+++++ .++|+||..... ..-...|-.+|||++.
T Consensus 56 ~~~i~~~i~~-------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKN-------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHc-------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2334455554 899999984321 2455688999999996
No 224
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=74.57 E-value=8.6 Score=32.59 Aligned_cols=109 Identities=22% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEcCCCcccHHH----HHHHHHHHHhC-CCeEEEEeCCc---chhhhHHhhhcCCCCccCCCCCCe-EEEeCCCCCCC
Q 012083 20 VLLVSFPAQGHVAS----LMKLAHRLADC-RIKVTFVTTEF---ICERIKESRQLGSFSEMGDAQQLV-RIVPLPDGLEP 90 (471)
Q Consensus 20 Il~~~~~~~GH~~p----~~~La~~L~~r-Gh~Vt~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~ 90 (471)
|+++.--..|.+++ ++..|++|++. |.+|+.++... ..+.+.+.... .|. +.+.+.+...
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~----------~G~d~v~~~~~~~~- 70 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK----------YGADKVYHIDDPAL- 70 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS----------TTESEEEEEE-GGG-
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh----------cCCcEEEEecCccc-
Confidence 44444444555555 67889999874 78888766543 23332221110 143 2232221100
Q ss_pred CCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeC
Q 012083 91 EDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
...+... ....+.+++++ .+||+|+...... .+..+|.+||.|++.-..
T Consensus 71 --~~~~~~~--------~a~~l~~~~~~-------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 71 --AEYDPEA--------YADALAELIKE-------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp --TTC-HHH--------HHHHHHHHHHH-------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred --cccCHHH--------HHHHHHHHHHh-------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 0011111 22234455555 6999999887655 467899999999998543
No 225
>PRK10867 signal recognition particle protein; Provisional
Probab=74.43 E-value=29 Score=34.65 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERI 60 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~ 60 (471)
+.-|+|+..++.|=..-+..||..|+++ |+.|.+++.+.++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 4567888888999999999999999999 9999999998877654
No 226
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=74.17 E-value=18 Score=33.47 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=46.3
Q ss_pred HHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCCchhHHhh--CCC-cEEEeccchhhhhccCcceeeeeccCcchhhHhhh
Q 012083 305 NELALGLELA-GQPFLCGVRPGFINGSSTNNPDGLVAKV--ADF-GKMVKWAPQEKVLAHPSVACYLTHCGWNSTMEGIS 380 (471)
Q Consensus 305 ~~~~~al~~~-~~~~i~~~~~~~~~~~~~~lp~~~~~~~--~~n-v~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~ 380 (471)
..+....+.. +..++++..+... ......+.+.. ..+ +.+.+-++-..++.+++. +||-.+. .-.||+.
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll 216 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDER----GGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALL 216 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhh----CCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHH
Confidence 3344444444 5677777655210 01111222222 233 334466777789977766 8887654 6789999
Q ss_pred cCCceeecc
Q 012083 381 MGVPFLCWP 389 (471)
Q Consensus 381 ~GvP~l~~P 389 (471)
+|+|++++.
T Consensus 217 ~gkpVi~~G 225 (269)
T PF05159_consen 217 HGKPVIVFG 225 (269)
T ss_pred cCCceEEec
Confidence 999999986
No 227
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=74.13 E-value=43 Score=27.31 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=39.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
.+|++-+..+-+|-.----++..|...|++|.........+.+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 5899999999999999999999999999999999887665555443
No 228
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=74.06 E-value=21 Score=32.78 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=33.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
++|..-|+.|-.....++|..+++.|++|.++..+... .+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~ 44 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSD 44 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHH
Confidence 45556778899999999999999999999999887643 4433
No 229
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=73.81 E-value=23 Score=35.38 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=34.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~ 61 (471)
+++...|+.|=..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 56777889999999999998887 6799999999886655543
No 230
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=73.73 E-value=31 Score=34.39 Aligned_cols=28 Identities=11% Similarity=-0.075 Sum_probs=23.6
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
.+||++|.. ..+..+|+++|||++.+..
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 799999987 3467799999999999653
No 231
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=73.24 E-value=12 Score=33.66 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=34.9
Q ss_pred EEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 20 VLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
|.|.+ =|+.|=..-++.||.+|+++|-.|+++=.++++....-
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHH
Confidence 34443 35779999999999999999999999988888776544
No 232
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=73.17 E-value=3.6 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.7
Q ss_pred cEEEEEcCCCcccHHHH------------HHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASL------------MKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~------------~~La~~L~~rGh~Vt~~~~~ 54 (471)
|||++...|+.-.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 47777777666555553 47889999999999998753
No 233
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=73.10 E-value=62 Score=28.09 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=56.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe---CC-cchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVT---TE-FICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
|.+++..+.|-....+.+|-+-.-+|.+|-++- .. .+-+..... ....++.|+..++++......
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~----------~~~~~v~~~~~~~g~tw~~~~- 99 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALE----------KFGLGVEFHGMGEGFTWETQD- 99 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHH----------hhccceeEEecCCceeCCCcC-
Confidence 677777888888877777776677787776653 22 222222111 112378888888766554211
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG 138 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~ 138 (471)
... .. ......++...+.+.+ .++|+||.|.+..
T Consensus 100 -~~~---d~-~aa~~~w~~a~~~l~~----~~ydlviLDEl~~ 133 (198)
T COG2109 100 -REA---DI-AAAKAGWEHAKEALAD----GKYDLVILDELNY 133 (198)
T ss_pred -cHH---HH-HHHHHHHHHHHHHHhC----CCCCEEEEehhhH
Confidence 111 11 2233334444444444 8999999998875
No 234
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=72.99 E-value=27 Score=34.76 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICER 59 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 59 (471)
+..|+|+..++.|=..-+..||..|+++|++|.+++.+.++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~a 142 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAG 142 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchh
Confidence 3467888888999999999999999999999999999887643
No 235
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=72.97 E-value=23 Score=35.37 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERI 60 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~ 60 (471)
+.-|+|+..++.|=..-+..||..|. ++|+.|.+++.+.++...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 34567888889999999999999997 589999999998877643
No 236
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.86 E-value=27 Score=35.10 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=27.1
Q ss_pred cCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 13 LNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 13 m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
|+.+.++++++.. |. .- +++|+.|+++|++|++.....
T Consensus 1 ~~~~~k~v~iiG~---g~-~G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGA---GV-SG-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECC---CH-HH-HHHHHHHHHCCCEEEEEeCCc
Confidence 3345678877743 33 22 499999999999999886643
No 237
>PRK05595 replicative DNA helicase; Provisional
Probab=72.72 E-value=14 Score=37.30 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.8
Q ss_pred EEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~ 61 (471)
+++...|+.|=..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 46677889999999999998876 5699999999886655443
No 238
>PRK08760 replicative DNA helicase; Provisional
Probab=72.61 E-value=16 Score=37.20 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=33.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhh
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERI 60 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~ 60 (471)
|++...|+.|=..-++.+|...+. .|+.|.|++.+...+.+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 567778899999999999998874 59999999888765544
No 239
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=72.47 E-value=5.6 Score=34.47 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=36.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
+||++...++.|=+. ...+.+.|+++|++|.++.++.....+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 688888888777665 7999999999999999999987766654
No 240
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=72.21 E-value=9.2 Score=27.92 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=31.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFV 51 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~ 51 (471)
.-++++..+...|...+..+|+.|++.|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6788999999999999999999999999999864
No 241
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.13 E-value=12 Score=29.57 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=35.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
|+++.+.+..-|-.-+.-++..|.++||+|.++......+.+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 7899999999999999999999999999999986655434443
No 242
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=71.02 E-value=52 Score=29.69 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=37.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCR-IKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rG-h~Vt~~~~~~~~~~~~~~ 63 (471)
|||++..=++.|-..-..-|+.+|.++| ++|..+=.+.+...-.+.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhc
Confidence 5999999999999888888788888886 999999777665554444
No 243
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=70.88 E-value=50 Score=30.50 Aligned_cols=37 Identities=5% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
.+|||+++.+++...-. .+.++|.++|++|.++....
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~ 38 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHIND 38 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeecc
Confidence 45799999998886443 55788989999999887643
No 244
>PRK08006 replicative DNA helicase; Provisional
Probab=70.82 E-value=26 Score=35.53 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~ 61 (471)
|++..-|+.|=....+.+|...+. .|+.|.|++.+...+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 566778899999999999988874 599999998886655443
No 245
>PHA02542 41 41 helicase; Provisional
Probab=70.05 E-value=19 Score=36.53 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=35.5
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
|++...|+.|=..-.+.+|...++.|+.|.|++-+...+.+.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~ 234 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA 234 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence 567778899999999999999988899999998877666443
No 246
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=69.77 E-value=28 Score=34.80 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||+||.+.. ...+|.++|+|++.++
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 79999999964 4678899999998764
No 247
>CHL00067 rps2 ribosomal protein S2
Probab=69.61 E-value=20 Score=32.38 Aligned_cols=36 Identities=22% Similarity=0.040 Sum_probs=27.4
Q ss_pred CCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHH
Q 012083 126 EKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGI 161 (471)
Q Consensus 126 ~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~ 161 (471)
..||+||+-...- .+..=|.++|||.|.+..+...+
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~p 197 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCDP 197 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 5788877655443 68889999999999998765543
No 248
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=69.61 E-value=54 Score=29.21 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=25.8
Q ss_pred EEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 012083 20 VLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVT 52 (471)
Q Consensus 20 Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~ 52 (471)
|.+.+ ....|-..-.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34443 3356899999999999999999997753
No 249
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.42 E-value=12 Score=31.00 Aligned_cols=75 Identities=15% Similarity=0.317 Sum_probs=54.5
Q ss_pred cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHhhcCCChH
Q 012083 381 MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN-DVVRKNALKLKELAQKSVTKEGSSS 459 (471)
Q Consensus 381 ~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~-~~~~~~a~~l~~~~~~~~~~gg~~~ 459 (471)
+|+| .|+...+..+|+.+.+. --++.- -..+.+.+.+.+|+.| |+-+-.+.+++..+.++ |....
T Consensus 74 CGkp---yPWt~~~L~aa~el~ee-~eeLs~-------deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~---g~~v~ 139 (158)
T PF10083_consen 74 CGKP---YPWTENALEAANELIEE-DEELSP-------DEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA---GSIVG 139 (158)
T ss_pred CCCC---CchHHHHHHHHHHHHHH-hhcCCH-------HHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH---hHHHH
Confidence 4555 48888899999988883 333333 2557899999999976 68888889999998887 66666
Q ss_pred HHHHHHHHHH
Q 012083 460 KNLEYFIKQI 469 (471)
Q Consensus 460 ~~~~~~~~~~ 469 (471)
..+..++-++
T Consensus 140 ~~~~dIlVdv 149 (158)
T PF10083_consen 140 DAIRDILVDV 149 (158)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 250
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=69.23 E-value=35 Score=30.86 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=35.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIKE 62 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~~ 62 (471)
=+++...|+.|=..-++.++..++.. |+.|.|++.+.....+..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 35667777889999999999888877 999999998876665544
No 251
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=69.20 E-value=29 Score=34.80 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
.+|+++...+ .....+++.|.+.|-+|..+......+..... ..+. .. ..+
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~------------~~~~-~~-----------~~D 361 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL------------PVET-VV-----------IGD 361 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC------------CcCc-EE-----------eCC
Confidence 4677776533 46688899999999999877665544322211 0010 00 012
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.. .+++++++ .++|+++... ....+|.++|||++.+.
T Consensus 362 ~~------------~l~~~i~~-------~~~dliig~s---~~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 362 LE------------DLEDLACA-------AGADLLITNS---HGRALAQRLALPLVRAG 398 (432)
T ss_pred HH------------HHHHHHhh-------cCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 21 23445555 7999999885 45779999999999864
No 252
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=68.21 E-value=57 Score=30.34 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
..|+|+..++-|=..-+..||..|++.|++|.++..+.++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45677777788999999999999999999999999886543
No 253
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.11 E-value=38 Score=32.54 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCcc-----cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC
Q 012083 17 NVHVLLVSFPAQG-----HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE 91 (471)
Q Consensus 17 ~~~Il~~~~~~~G-----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (471)
+..|+|.|..+.| -..-+..|++.|.++|..|.+..++.-.+..++... .+.....
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~------------~~~~~~~------- 235 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK------------GLPNAVI------- 235 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH------------hcCCccc-------
Confidence 3678888873442 344688999999999999999888854444443311 1110000
Q ss_pred CCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCch
Q 012083 92 DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSA 158 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~ 158 (471)
-.....+.++..-+ ...|++|+... +..++|..+|.|+|.++...
T Consensus 236 --------------l~~k~sL~e~~~li------~~a~l~I~~DS--g~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 236 --------------LAGKTSLEELAALI------AGADLVIGNDS--GPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred --------------cCCCCCHHHHHHHH------hcCCEEEccCC--hHHHHHHHcCCCEEEEECCC
Confidence 00111233333332 36788886543 67899999999999987544
No 254
>PRK09620 hypothetical protein; Provisional
Probab=67.86 E-value=6.2 Score=35.67 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCcccHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012083 16 TNVHVLLVSFPAQGHVAS------------LMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p------------~~~La~~L~~rGh~Vt~~~~~ 54 (471)
+.+||++...|+.-.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 346888887776555444 358999999999999999764
No 255
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=67.59 E-value=5.5 Score=40.00 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=43.2
Q ss_pred hhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHHHHHH
Q 012083 374 STMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRKNALK 443 (471)
Q Consensus 374 s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a~~ 443 (471)
++.||+++|+|++..= +..=+..+.. .--|...++ +.-....+++++.++..|++++.++.+
T Consensus 381 v~IEAMa~glPvvAt~----~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~~p~l~~~~~~ 442 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATN----NGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRRDPELWARMGK 442 (495)
T ss_pred eeHHHHhcCCCEEEec----CCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7899999999999883 3333444444 356777764 222223799999999999988666544
No 256
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=67.27 E-value=1.2e+02 Score=29.13 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCcEEE-eccch---hhhhccCcceeeeec--cCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCC
Q 012083 344 DFGKMV-KWAPQ---EKVLAHPSVACYLTH--CGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNG 417 (471)
Q Consensus 344 ~nv~~~-~~vpq---~~lL~~~~~~~~ItH--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~ 417 (471)
+|+.+. +++|. ..+|+.+++..|.|. =|.|+++-.|+.|+|+++-- +-+.+- -+.+ .|+-+.... +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~-~l~~-~~ipVlf~~---d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQ-DLKE-QGIPVLFYG---D 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHH-HHHh-CCCeEEecc---c
Confidence 577654 78884 579988888766664 58999999999999998762 333333 3455 377776653 7
Q ss_pred CcCHhHHHHHHHHHhC
Q 012083 418 IIGRHEIKRKVDELLS 433 (471)
Q Consensus 418 ~~~~~~l~~~i~~ll~ 433 (471)
.++...|.++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7899888888887764
No 257
>PRK09165 replicative DNA helicase; Provisional
Probab=67.12 E-value=28 Score=35.57 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=34.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhC---------------CCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADC---------------RIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~r---------------Gh~Vt~~~~~~~~~~~~~ 62 (471)
+++...|+.|=..-++.+|...+.+ |..|.|++.....+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5677788999999999998888653 789999998877665543
No 258
>PRK06988 putative formyltransferase; Provisional
Probab=66.96 E-value=58 Score=30.99 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=23.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|||+|+..+. ..+...++|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 8999996554 3456677788889998877664
No 259
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=66.53 E-value=23 Score=35.48 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
.||||++..+++-| +|+++|++.++...+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 48999999999888 689999998866566655544
No 260
>PRK06321 replicative DNA helicase; Provisional
Probab=66.15 E-value=44 Score=33.90 Aligned_cols=42 Identities=21% Similarity=0.420 Sum_probs=34.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~ 61 (471)
|++...|+.|=...++.+|...+ +.|+.|.|++.+...+.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 56777889999999999999987 4599999998887655543
No 261
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=66.00 E-value=90 Score=27.12 Aligned_cols=56 Identities=21% Similarity=0.177 Sum_probs=36.7
Q ss_pred cEEEEEcCCC----cccH-HHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCC
Q 012083 18 VHVLLVSFPA----QGHV-ASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLP 85 (471)
Q Consensus 18 ~~Il~~~~~~----~GH~-~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 85 (471)
.||.++..-+ +|=+ .-.-.|+..|+++||+||+.|.....+... ....|++...+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~------------~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKE------------FEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCC------------cccCCeEEEEeC
Confidence 6777776432 3333 345577888888999999999876653322 223478887775
No 262
>PRK11519 tyrosine kinase; Provisional
Probab=65.39 E-value=1.8e+02 Score=31.53 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=69.4
Q ss_pred CcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhh-hc---CCCC-----------ccCCCCCCe
Q 012083 17 NVHVLLVSF--PAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESR-QL---GSFS-----------EMGDAQQLV 79 (471)
Q Consensus 17 ~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~-~~---~~~~-----------~~~~~~~~i 79 (471)
+.|+++++. |+-|=..-...||..|+..|++|.++-.+.....+.... .. .+.. ......+++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 456655554 577888889999999999999999996554333332211 00 0000 001112344
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc----hHHHHHHHcCCceEEEe
Q 012083 80 RIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG----WALQVAAKLELKKASIY 155 (471)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~----~~~~~A~~lgiP~v~~~ 155 (471)
.+.+-.. ...+..+++ ....++++++.++ .++|+||.|.--. -+..+|...+..++.+-
T Consensus 605 ~~lp~g~------~~~~~~ell------~s~~~~~ll~~l~-----~~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr 667 (719)
T PRK11519 605 DLIPRGQ------VPPNPSELL------MSERFAELVNWAS-----KNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVAR 667 (719)
T ss_pred EEEeCCC------CCCCHHHHh------hHHHHHHHHHHHH-----hcCCEEEEeCCCcccchHHHHHHHHCCeEEEEEe
Confidence 4433211 122333322 2334677777765 5899999997643 24567788787765543
No 263
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=64.78 E-value=9.4 Score=33.18 Aligned_cols=41 Identities=15% Similarity=0.108 Sum_probs=34.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
+||++--.|+.|-+.-.+.+.++|.+.|++|+++.++....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 37888888888888777899999999999999998876543
No 264
>PRK05920 aromatic acid decarboxylase; Validated
Probab=64.74 E-value=12 Score=33.08 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=35.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+||++--.|+.+= .=...+.+.|.+.||+|+++.+......+..
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 6888777665554 5788999999999999999999887776653
No 265
>PRK14974 cell division protein FtsY; Provisional
Probab=64.44 E-value=72 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
+..|+|+..++.|=..-+..||..|.++|++|.+++...++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 456788889999999999999999999999999988876543
No 266
>PRK06904 replicative DNA helicase; Validated
Probab=64.36 E-value=35 Score=34.63 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=34.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~ 61 (471)
|++...|+.|=..-++.+|...+. .|+.|.|++.+...+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 566778899999999999998875 599999999887665554
No 267
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=64.29 E-value=79 Score=26.67 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=62.7
Q ss_pred EEcCCCcccHHHHH-HHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC--CCcccHH
Q 012083 22 LVSFPAQGHVASLM-KLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE--DDRKDEA 98 (471)
Q Consensus 22 ~~~~~~~GH~~p~~-~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 98 (471)
.+.+...+....++ .+|.+|+.+|++|.=+........- .....+....++++..-. .+...-.
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~-------------~~~~~m~l~dl~~G~~~~IsQ~LG~gs 69 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGD-------------GGRCDMDLRDLPSGRRIRISQDLGPGS 69 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCC-------------CCccceEEEECCCCCEEEEeeccCCCC
Confidence 34445556666644 7899999999999855543311111 122356666666543211 1111101
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---------hHHHHHHHcCCceEEEeCchHH
Q 012083 99 KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG---------WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 99 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---------~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
.-|+.=-.........+.+.+. .++|++|.+-|.- .....|-..|||+++..+....
T Consensus 70 ~gCrLD~~~La~A~~~l~~al~-----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 70 RGCRLDPGALAEASAALRRALA-----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred cccccCHHHHHHHHHHHHHHHh-----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 1111111112222223333333 5899999987643 1234567789999998765443
No 268
>PRK08840 replicative DNA helicase; Provisional
Probab=64.24 E-value=37 Score=34.35 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=34.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~ 61 (471)
|++..-|+.|=..-.+.+|...+. .|+.|.|++.+...+.+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 566778899999999999999874 599999999887665553
No 269
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=64.12 E-value=63 Score=27.40 Aligned_cols=31 Identities=39% Similarity=0.260 Sum_probs=25.5
Q ss_pred CCeeEEEECCCcc---hHHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFG---WALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~ 156 (471)
.+||+|+...... .+..+|.+||.|++.-..
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 6899999887655 577899999999998544
No 270
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=64.10 E-value=38 Score=30.16 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=25.6
Q ss_pred CCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIADVTFG--WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+-.... .+..=|..+|||.|.+..+...
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~~ 178 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNCN 178 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS-
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCCC
Confidence 5699988665433 7788899999999999876544
No 271
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=63.60 E-value=38 Score=30.28 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=36.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
.-+++...|+.|=..-++.++....++|+.|.+++.....+.+.+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~ 62 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGY 62 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHH
Confidence 4567777788898888888888887889999999998877666544
No 272
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=63.46 E-value=37 Score=31.26 Aligned_cols=35 Identities=14% Similarity=0.012 Sum_probs=26.2
Q ss_pred CCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIADVTFG--WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+-...- .+..=|.++|||+|.+.-+...
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~d 192 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNCD 192 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCCC
Confidence 4789877544332 6788999999999999766543
No 273
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=63.45 E-value=35 Score=30.74 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=26.4
Q ss_pred CCeeEEEECCCc--chHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIADVTF--GWALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~D~~~--~~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+-... ..+..=|.++|||.|.+.-+...
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~ 190 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCD 190 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCC
Confidence 478987754433 26888999999999999766544
No 274
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=63.43 E-value=70 Score=32.65 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
..-+++...|+.|=..-.+.++.+.+++|..|.+++.....+.+...
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~ 309 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRN 309 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHH
Confidence 45688888999999999999999999999999999998877666543
No 275
>PRK05636 replicative DNA helicase; Provisional
Probab=63.30 E-value=22 Score=36.40 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=32.3
Q ss_pred EEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhh
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERI 60 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~ 60 (471)
|++...|+.|=..-.+.+|...+ +.|..|.|++.+...+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 56677889999998999998876 468899999887765544
No 276
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=63.21 E-value=57 Score=28.06 Aligned_cols=30 Identities=33% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCeeEEEECCCcc---hHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFG---WALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~ 155 (471)
.+||+|+...... .+..+|.+||.|++.=.
T Consensus 90 ~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv 122 (181)
T cd01985 90 EKPDLILAGATSIGKQLAPRVAALLGVPQISDV 122 (181)
T ss_pred hCCCEEEECCcccccCHHHHHHHHhCCCcceeE
Confidence 6899999887665 56789999999999843
No 277
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=63.02 E-value=13 Score=32.34 Aligned_cols=44 Identities=16% Similarity=0.174 Sum_probs=36.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~~ 62 (471)
+||++.-.|+.+ ..=...+++.|.+ .||+|.++.++.....+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 688888878777 5558899999999 5999999999888776654
No 278
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=62.86 E-value=53 Score=28.15 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=60.4
Q ss_pred ccHHHHHHHHHHH-HhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCC----------CCCC------
Q 012083 29 GHVASLMKLAHRL-ADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDG----------LEPE------ 91 (471)
Q Consensus 29 GH~~p~~~La~~L-~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~------ 91 (471)
+.+.-.+..|+.| ...|.+|.+.-. .....+++.. ++..+.++.. ....
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~-------------~iPVV~I~~s~~Dil~al~~a~~~~~~Iav 82 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV-------------SIPVVEIPISGFDILRALAKAKKYGPKIAV 82 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC--------------SS-EEEE---HHHHHHHHHHCCCCTSEEEE
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC-------------CCCEEEECCCHhHHHHHHHHHHhcCCcEEE
Confidence 5677788999999 788999977655 3455555431 4444444410 0000
Q ss_pred ----CCcccHHHHHHHHHhh--------ccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCchH
Q 012083 92 ----DDRKDEAKMTRSISKV--------MPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSAP 159 (471)
Q Consensus 92 ----~~~~~~~~~~~~~~~~--------~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~ 159 (471)
....+...+.+.+ .. ....++..+.++.. .+.|+||.+.. ...+|+++|+|++.+.++.-
T Consensus 83 v~~~~~~~~~~~~~~ll-~~~i~~~~~~~~~e~~~~i~~~~~----~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 83 VGYPNIIPGLESIEELL-GVDIKIYPYDSEEEIEAAIKQAKA----EGVDVIVGGGV---VCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp EEESS-SCCHHHHHHHH-T-EEEEEEESSHHHHHHHHHHHHH----TT--EEEESHH---HHHHHHHTTSEEEESS--HH
T ss_pred EecccccHHHHHHHHHh-CCceEEEEECCHHHHHHHHHHHHH----cCCcEEECCHH---HHHHHHHcCCcEEEEEecHH
Confidence 0112222222222 11 13356677777766 79999999954 57899999999999877554
Q ss_pred H
Q 012083 160 G 160 (471)
Q Consensus 160 ~ 160 (471)
+
T Consensus 155 s 155 (176)
T PF06506_consen 155 S 155 (176)
T ss_dssp H
T ss_pred H
Confidence 4
No 279
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=62.75 E-value=54 Score=33.32 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.9
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEE
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASI 154 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~ 154 (471)
.+||++|.. .....+|+++|||++-.
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 799999997 45668999999999843
No 280
>PRK07004 replicative DNA helicase; Provisional
Probab=62.47 E-value=40 Score=34.13 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=34.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~ 61 (471)
|++...|+.|=..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~ 258 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLA 258 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 56777889999999999998886 4699999999887765543
No 281
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=62.31 E-value=60 Score=32.49 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=23.2
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 89999999964 5789999999999864
No 282
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=61.76 E-value=49 Score=30.50 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
..-+++...|+.|=..-++.++...+++|..|.|++.....
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 34567788889999999999999988899999999987533
No 283
>PRK12342 hypothetical protein; Provisional
Probab=61.57 E-value=15 Score=33.77 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=26.1
Q ss_pred CCeeEEEECCCcc-h-----HHHHHHHcCCceEEEeCc
Q 012083 126 EKITCVIADVTFG-W-----ALQVAAKLELKKASIYTS 157 (471)
Q Consensus 126 ~~pD~vV~D~~~~-~-----~~~~A~~lgiP~v~~~~~ 157 (471)
.+||+|++...+. . +..+|+.||+|++.....
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 6799999876655 3 789999999999997643
No 284
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=61.29 E-value=12 Score=34.22 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.3
Q ss_pred CcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 27 AQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 27 ~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
..|=-..+-+|+++|+++||+|+++++..
T Consensus 15 ~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 15 VGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34555667899999999999999998865
No 285
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=61.25 E-value=43 Score=32.79 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=34.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~ 60 (471)
=+++...|+.|=..-++.+|..++..|..|.+++.....+.+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 457777789999999999999999999999999887655444
No 286
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=61.23 E-value=15 Score=34.67 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=29.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
|||+|+..|..| ..+|..|++.||+|+++..+...+.+.+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 589999877776 4578889999999999987444444443
No 287
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=61.08 E-value=70 Score=27.42 Aligned_cols=100 Identities=19% Similarity=0.110 Sum_probs=48.8
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc-h--hhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI-C--ERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRK 95 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 95 (471)
.|.+++..+.|=....+.+|-+-+-+|.+|.++-.-.. . ...... ...+++.+.....++......
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l----------~~l~~~~~~~~g~~f~~~~~~- 73 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL----------KKLPNVEIERFGKGFVWRMNE- 73 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH----------GGGT--EEEE--TT----GGG-
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH----------HhCCeEEEEEcCCcccccCCC-
Confidence 47788889999999888887777778888888854332 1 111111 112357777766543332111
Q ss_pred cHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc
Q 012083 96 DEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG 138 (471)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~ 138 (471)
...+ .......++...+.+.. .++|+||.|-...
T Consensus 74 ~~~~-----~~~~~~~~~~a~~~i~~----~~~dlvILDEi~~ 107 (172)
T PF02572_consen 74 EEED-----RAAAREGLEEAKEAISS----GEYDLVILDEINY 107 (172)
T ss_dssp HHHH-----HHHHHHHHHHHHHHTT-----TT-SEEEEETHHH
T ss_pred cHHH-----HHHHHHHHHHHHHHHhC----CCCCEEEEcchHH
Confidence 1111 22233334444444433 7999999997754
No 288
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=60.82 E-value=90 Score=25.37 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~ 60 (471)
++.||++...+.-+|-.---=++..|...|++|.-.......+.+
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 367999999999999999988999999999999988765444433
No 289
>PRK04328 hypothetical protein; Provisional
Probab=60.51 E-value=1.1e+02 Score=28.08 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
..-+++...|+.|-..-.+.++.+-+++|+.+.+++.....+.+.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 4567888888999988888888777788999999998776655443
No 290
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=60.41 E-value=1.2e+02 Score=30.05 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=30.3
Q ss_pred CcEEEEEcC--CCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 17 NVHVLLVSF--PAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 17 ~~~Il~~~~--~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
+|+|+.+.. |+-|=..-.+.||..|+.+|++|.++=.+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 356655553 67899999999999999999999988443
No 291
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=60.17 E-value=99 Score=26.96 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=21.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCC--eEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRI--KVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh--~Vt~~~~~ 54 (471)
|||+++..+..+-+. ++.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEEC
Confidence 488888876655544 56666776655 66665443
No 292
>PLN02712 arogenate dehydrogenase
Probab=59.53 E-value=57 Score=34.79 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
++|||+|+..|..|. .+|+.|++.||+|+++....
T Consensus 368 ~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 368 SKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred CCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEECCh
Confidence 458999997655443 67889999999999876654
No 293
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.52 E-value=8.2 Score=32.51 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=29.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc-chhhhHH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF-ICERIKE 62 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~-~~~~~~~ 62 (471)
||.++..|..|+ ++|..|+.+||+|++.+... ..+.+.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~~~~~~i~~ 40 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDEEQIEEINE 40 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCHHHHHHHHH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence 567777666665 78999999999999999975 3334443
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=59.43 E-value=73 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEE
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASI 154 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~ 154 (471)
.+||+++.... ...+|+++|||++.+
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 79999999844 457889999999864
No 295
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=59.14 E-value=58 Score=27.59 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=34.7
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICER 59 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 59 (471)
+++...++.|=......++..|.+.|.+|.++..+.++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 5777888999999999999999999999999988766543
No 296
>PRK07773 replicative DNA helicase; Validated
Probab=59.11 E-value=49 Score=36.65 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=35.1
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~~ 62 (471)
|++...|+.|=..-++.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 6777888999999999999988754 889999998876665543
No 297
>PRK11823 DNA repair protein RadA; Provisional
Probab=59.04 E-value=43 Score=33.72 Aligned_cols=44 Identities=34% Similarity=0.378 Sum_probs=36.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
.-+++...|+.|=..-++.++..++++|+.|.+++.....+.+.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 34677788899999999999999998999999999887665543
No 298
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.89 E-value=76 Score=28.27 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=35.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc-hhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI-CERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~-~~~~~~~ 63 (471)
.=+++-.-.+.|--.-++.++.-+...||.|++++++.. ++.+.++
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHH
Confidence 345666666889999999999999999999999999864 4444443
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=58.76 E-value=27 Score=30.02 Aligned_cols=43 Identities=21% Similarity=0.097 Sum_probs=35.9
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+++...|+.|=..-.+.++...++.|..|.+++.....+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHH
Confidence 5677788999999999999999999999999999877665543
No 300
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.39 E-value=16 Score=33.76 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=34.9
Q ss_pred eeeeeccCcchhhHhhh------cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 364 ACYLTHCGWNSTMEGIS------MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 364 ~~~ItHgG~~s~~eal~------~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
+++|+-||-||++.+++ .++|++.+-. - .+|-.- .++.+++.+.+++++++
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFYT------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceecc------cCCHHHHHHHHHHHHcC
Confidence 44999999999999986 4889888732 1 122221 23556777777777765
No 301
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.20 E-value=1.1e+02 Score=25.54 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=70.4
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeee
Q 012083 288 VIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYL 367 (471)
Q Consensus 288 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~I 367 (471)
.|-|-+|| ..+....+++...|++.+..+-+.+.+- ...|+.+.+ ++. -+.+..++.||
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~sa------HR~p~~l~~----------~~~---~~~~~~~~viI 60 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASA------HRTPERLLE----------FVK---EYEARGADVII 60 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--T------TTSHHHHHH----------HHH---HTTTTTESEEE
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEec------cCCHHHHHH----------HHH---HhccCCCEEEE
Confidence 45555666 4567778889999998887665544332 223333221 111 11112334488
Q ss_pred eccCcc----hhhHhhhcCCceeecccccchhhhHH----HHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcHHHHH
Q 012083 368 THCGWN----STMEGISMGVPFLCWPWGHDHLYIKS----CICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSNDVVRK 439 (471)
Q Consensus 368 tHgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~----~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 439 (471)
.=.|.. ++.-++. -.|+|.+|....+..... .++---|+++..-.- ++..+...+.-.| --+.|+++++
T Consensus 61 a~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~I-La~~d~~l~~ 137 (150)
T PF00731_consen 61 AVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARI-LALKDPELRE 137 (150)
T ss_dssp EEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHH-HHTT-HHHHH
T ss_pred EECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHH-HhcCCHHHHH
Confidence 877754 3444433 799999998766442211 111101555443210 1222333333333 2346789999
Q ss_pred HHHHHHHHHHHH
Q 012083 440 NALKLKELAQKS 451 (471)
Q Consensus 440 ~a~~l~~~~~~~ 451 (471)
+.+..+++.++.
T Consensus 138 kl~~~~~~~~~~ 149 (150)
T PF00731_consen 138 KLRAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 999999888763
No 302
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=57.96 E-value=64 Score=32.59 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=26.8
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 19 HVLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 19 ~Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
+|++.... ..|=..-...|++.|+++|++|..+-.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45555433 457888899999999999999987744
No 303
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=57.90 E-value=41 Score=32.67 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=52.2
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCc-hhHHh-hCC-Cc-EEEec-----------
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPD-GLVAK-VAD-FG-KMVKW----------- 351 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~-~~~~~-~~~-nv-~~~~~----------- 351 (471)
.+++.+.||-+-..+ -..+++.|++.+++++|......-. ...+|. ++.-. .+. .. +...|
T Consensus 3 ~i~~~~GGTGGHi~P--ala~a~~l~~~g~~v~~vg~~~~~e--~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTP--NLAIIPYLKEDNWDISYIGSHQGIE--KTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHH--HHHHHHHHHhCCCEEEEEECCCccc--cccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 477777777433222 2346677777788998887544110 111221 11000 000 00 00000
Q ss_pred --cchhhhhccCcceeeeeccCcch---hhHhhhcCCceeec
Q 012083 352 --APQEKVLAHPSVACYLTHCGWNS---TMEGISMGVPFLCW 388 (471)
Q Consensus 352 --vpq~~lL~~~~~~~~ItHgG~~s---~~eal~~GvP~l~~ 388 (471)
+--..+++.-+-+++|++||+-| +..|...|+|+++.
T Consensus 79 ~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 79 GVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 01113454444445999999997 89999999999875
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.74 E-value=1.2e+02 Score=29.01 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
+..|+|+..++.|=..-+..||..|+.+|++|.+++.+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 45678888889999999999999999999999999887664
No 305
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=57.67 E-value=86 Score=29.04 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=58.9
Q ss_pred cEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCC
Q 012083 18 VHVLLVSFPAQG----HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDD 93 (471)
Q Consensus 18 ~~Il~~~~~~~G----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (471)
..|+|.|..+.. ...-+..|++.|.++|++|.+++.+...+..++.... ..+-....
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~---------~~~~~~~~---------- 182 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAA---------LGGPRVVN---------- 182 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHh---------cCCCcccc----------
Confidence 346666654322 2345889999999999999998887655554432100 00000000
Q ss_pred cccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCc
Q 012083 94 RKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTS 157 (471)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~ 157 (471)
+. ....+.+++.-+ .+.|++|+.. .+...+|..+|+|++.++..
T Consensus 183 ----------~~--~~~~l~e~~~li------~~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 183 ----------LA--GKTSLRELAALL------ARADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred ----------Cc--CCCCHHHHHHHH------HhCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 00 011123333333 3678888754 36788999999999998753
No 306
>PRK00784 cobyric acid synthase; Provisional
Probab=57.41 E-value=80 Score=32.24 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=25.9
Q ss_pred EEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEe
Q 012083 20 VLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVT 52 (471)
Q Consensus 20 Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~ 52 (471)
|++.... .-|=..-...|++.|+++|++|..+=
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 5555443 46899999999999999999988653
No 307
>PRK07206 hypothetical protein; Provisional
Probab=57.26 E-value=46 Score=33.03 Aligned_cols=33 Identities=21% Similarity=0.066 Sum_probs=23.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
++|+++-.... ...++++++++|++|.+++...
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 46777765433 3468999999999998887654
No 308
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=57.02 E-value=33 Score=31.09 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCcc--cH--HHHHHHHHHHHhCCCeEEEEeCCcch--hhhHHhhhcCCCCccCCCCCCeE--EEeCCCCC
Q 012083 17 NVHVLLVSFPAQG--HV--ASLMKLAHRLADCRIKVTFVTTEFIC--ERIKESRQLGSFSEMGDAQQLVR--IVPLPDGL 88 (471)
Q Consensus 17 ~~~Il~~~~~~~G--H~--~p~~~La~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~ 88 (471)
+..|+|.+..+.. .+ .-+..|++.|.++|..|.+++++... +...... + +.. ...+.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-~-----------~~~~~~~~~~--- 169 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-A-----------GLQNPVINLA--- 169 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-T-----------THTTTTEEET---
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-H-----------hcccceEeec---
Confidence 4567777766442 22 23689999999999888888887762 2222221 0 110 11110
Q ss_pred CCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCch
Q 012083 89 EPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTSA 158 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~~ 158 (471)
....+.+++.-+ ...|++|+... +...+|..+|+|++.++...
T Consensus 170 -------------------~~~~l~e~~ali------~~a~~~I~~Dt--g~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 170 -------------------GKTSLRELAALI------SRADLVIGNDT--GPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp -------------------TTS-HHHHHHHH------HTSSEEEEESS--HHHHHHHHTT--EEEEESSS
T ss_pred -------------------CCCCHHHHHHHH------hcCCEEEecCC--hHHHHHHHHhCCEEEEecCC
Confidence 001123333333 46788886543 67899999999999997643
No 309
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.30 E-value=41 Score=32.66 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=39.1
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhh
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICER 59 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~ 59 (471)
++.-|+|+..-+.|-..-|-.+|..++++|+.+-++|.+.|+.-
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG 143 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc
Confidence 34668888888999999999999999999999999999988654
No 310
>PRK05748 replicative DNA helicase; Provisional
Probab=56.00 E-value=57 Score=32.89 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=35.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHH-hCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLA-DCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~-~rGh~Vt~~~~~~~~~~~~ 61 (471)
=|++...|+.|=..-.+.+|...+ +.|+.|.|++.....+.+.
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 367777889999999999999886 4699999999887666543
No 311
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=55.95 E-value=16 Score=34.36 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=28.8
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC-CcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTT-EFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~-~~~~~~~~ 61 (471)
|||+++..|..| ..+|..|++.||+|+++.. +...+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALN 40 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHH
Confidence 488888877666 4678889999999999987 33333343
No 312
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=55.90 E-value=65 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=35.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~ 61 (471)
=+++...|+.|=..-++.+|..++. .|+.|.|++.+...+.+.
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 3567778899999999999998875 699999999987766554
No 313
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=55.17 E-value=43 Score=28.37 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=27.5
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 24 SFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 24 ~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
+-|+-|=..-.+.||..|++.|++|.++=.+..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q 39 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIY 39 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 346778889999999999999999999865443
No 314
>PRK08116 hypothetical protein; Validated
Probab=55.05 E-value=1.7e+02 Score=27.08 Aligned_cols=42 Identities=26% Similarity=0.284 Sum_probs=31.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
++|...++.|=..=+.+++++|.++|+.|.+++.+.....+.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK 158 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 777777788866667789999998899988887655544443
No 315
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=55.00 E-value=18 Score=34.89 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=30.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
|||+|+..|..|. .+|..|+++||+|+++......+.+.
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~~ 41 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDELR 41 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHHH
Confidence 7999998887774 57888999999999998654333333
No 316
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=54.99 E-value=1.1e+02 Score=30.99 Aligned_cols=27 Identities=30% Similarity=0.197 Sum_probs=21.8
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||++|.. .....+|.++|||++.+.
T Consensus 394 ~~pDl~ig~---~~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 394 YKADLLIAG---GKERYTALKLGIPFCDIN 420 (456)
T ss_pred cCCCEEEEc---cchHHHHHhcCCCEEEcc
Confidence 899999986 335668889999998853
No 317
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=54.79 E-value=1.1e+02 Score=24.67 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=36.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+|++-+..+-+|-.----++..|...|++|.-.......+.+.+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 578888899999999888899999999999988776655554443
No 318
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=54.71 E-value=21 Score=34.05 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcchH----------HHHHHHcCCceEEEe
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFGWA----------LQVAAKLELKKASIY 155 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~----------~~~A~~lgiP~v~~~ 155 (471)
..+++++.++. .+||++|+.+.+.++ ..+.++++||.+.-.
T Consensus 68 a~~~i~~mv~~----~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 68 ALKKILEMVKK----LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred HHHHHHHHHHh----cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 44455555555 999999999877632 135578999998743
No 319
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=54.60 E-value=1.2e+02 Score=28.96 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=59.6
Q ss_pred cEEEEEcCCCcc-----cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 18 VHVLLVSFPAQG-----HVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 18 ~~Il~~~~~~~G-----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
.-|+|.|..+.| ...-+..|++.|.+.|+.|.+++++...+...+..... +-....
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~----------~~~~~~--------- 235 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALL----------PGELRN--------- 235 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhC----------Cccccc---------
Confidence 456676655333 23368899999998899999988876655444321000 000000
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
+ .....+.++..-+ .+.|++|+... +..++|..+|+|.|.++.
T Consensus 236 -----------l--~g~~sL~el~ali------~~a~l~I~~DS--Gp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 236 -----------L--AGETSLDEAVDLI------ALAKAVVTNDS--GLMHVAAALNRPLVALYG 278 (334)
T ss_pred -----------C--CCCCCHHHHHHHH------HhCCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 0 0111233443333 46789997644 678999999999998865
No 320
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=54.55 E-value=1.4e+02 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=22.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
|||+|+..+. ..+...+.|.++||+|..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLESGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCcEEEEEC
Confidence 5899986543 446777888888999886654
No 321
>PLN02470 acetolactate synthase
Probab=54.41 E-value=45 Score=34.98 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=53.6
Q ss_pred ecCccccCCHH--HHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEe--------ccchhhhhccC
Q 012083 292 AFGSISKLSQQ--QFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVK--------WAPQEKVLAHP 361 (471)
Q Consensus 292 s~GS~~~~~~~--~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~--------~vpq~~lL~~~ 361 (471)
+|||....+.. .-+.+++.|++.+.+.++.+.+. ....+-+.+. ..++++++. ++-.-.-....
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~----~~~~l~dal~--~~~~i~~i~~rhE~~A~~~Adgyar~tg 75 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG----ASMEIHQALT--RSNCIRNVLCRHEQGEVFAAEGYAKASG 75 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc----ccHHHHHHHh--ccCCceEEEeccHHHHHHHHHHHHHHhC
Confidence 46665333322 25678999999999999988765 1111112221 012343331 11111111223
Q ss_pred cceeeeeccCcc------hhhHhhhcCCceeecc
Q 012083 362 SVACYLTHCGWN------STMEGISMGVPFLCWP 389 (471)
Q Consensus 362 ~~~~~ItHgG~~------s~~eal~~GvP~l~~P 389 (471)
++.++++|.|-| .+.+|...++|||++.
T Consensus 76 ~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 76 KVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 455689998854 7899999999999995
No 322
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=54.36 E-value=26 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=34.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
++|+++..|..|.. +|+.|+++||.|.++.-+...+.....
T Consensus 4 ~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 4 MKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred cEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 79999998888864 799999999999999988887766554
No 323
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=54.04 E-value=1.5e+02 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=27.1
Q ss_pred cEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 18 VHVLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 18 ~~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
++|+++. .|..|. .+|+.|.++||+|+++....
T Consensus 99 ~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCc
Confidence 7899997 777775 57899999999999987643
No 324
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=53.37 E-value=1.1e+02 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=33.0
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
||++..-++.|=......+++.|+++|.+|.++-...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 5788888999999999999999999999999887765
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=53.29 E-value=53 Score=29.57 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+.-+++...++.|-..-+..++...+++|..|.|++.....+.+.+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 4557788888999999999998888889999999999876554433
No 326
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=53.20 E-value=51 Score=31.62 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.1
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 23 VSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 23 ~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
++.|+.|=.--...|++.|.++|++|.+++-..-.
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 45678899999999999999999999999886543
No 327
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=53.02 E-value=24 Score=33.21 Aligned_cols=47 Identities=23% Similarity=0.144 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCcccHH--------HHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVA--------SLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~--------p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
..+|++++..-..|.. -.+.||++|...|-+|+++|.+...+.+++.
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~ 94 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAA 94 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHH
Confidence 3566666533322322 2678999999999999999999988887765
No 328
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=53.00 E-value=71 Score=33.13 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=46.1
Q ss_pred hhhhhccCcceeeee---ccC-cchhhHhhhcCCceeeccccc-chhhhHHHHHhhh-cceeeecCCC--CCCcCHhHHH
Q 012083 354 QEKVLAHPSVACYLT---HCG-WNSTMEGISMGVPFLCWPWGH-DHLYIKSCICDDW-KIGLWLEPDD--NGIIGRHEIK 425 (471)
Q Consensus 354 q~~lL~~~~~~~~It---HgG-~~s~~eal~~GvP~l~~P~~~-DQ~~na~~v~~~~-G~G~~~~~~~--~~~~~~~~l~ 425 (471)
..++++.+++ +|. +=| ..++.||+++|+|+|+....+ .... ..+...- ..|+.+.... ...-+.++|.
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 4566755555 665 345 458999999999999986532 2221 1122110 2577775321 1123457888
Q ss_pred HHHHHHhCcH
Q 012083 426 RKVDELLSND 435 (471)
Q Consensus 426 ~~i~~ll~~~ 435 (471)
+++.++++.+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 8888888543
No 329
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=52.60 E-value=15 Score=33.38 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=51.7
Q ss_pred CCcEEEEecCcc---ccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCC-CCCCchhHHhhCCCcE-EEec--cch-hh
Q 012083 285 PGSVIYAAFGSI---SKLSQQQFNELALGLELAGQPFLCGVRPGFINGSS-TNNPDGLVAKVADFGK-MVKW--APQ-EK 356 (471)
Q Consensus 285 ~~~vv~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~-~~lp~~~~~~~~~nv~-~~~~--vpq-~~ 356 (471)
+++.|.+..|+. ..++.+.+.++++.+.+.++.+++..++. +. ...-+.+.+....++. +.+- +.+ ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----EQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----HHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----HHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 355788888875 45678889999999988776655444332 00 0000011111122232 2222 233 37
Q ss_pred hhccCcceeeeeccCcchhhHhhhcCCceeec
Q 012083 357 VLAHPSVACYLTHCGWNSTMEGISMGVPFLCW 388 (471)
Q Consensus 357 lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~ 388 (471)
+++++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 180 li~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 180 LISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 8877776 8887 457889999999999998
No 330
>PRK13768 GTPase; Provisional
Probab=52.48 E-value=39 Score=31.00 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=32.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
+.|++...++.|=..-+..++..|...|++|.++....
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 45677777788999999999999999999999987654
No 331
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=52.46 E-value=1.5e+02 Score=25.69 Aligned_cols=137 Identities=9% Similarity=0.029 Sum_probs=69.3
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCC-cEEEeccc-------hhhhhc
Q 012083 288 VIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADF-GKMVKWAP-------QEKVLA 359 (471)
Q Consensus 288 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~n-v~~~~~vp-------q~~lL~ 359 (471)
+++.-.||.... ....+++.|.+.+..+-+.+.+. ....+.....+...++ +..-.|.+ +-.+..
T Consensus 4 Ill~vtGsiaa~---~~~~li~~L~~~g~~V~vv~T~~----A~~fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~l~~ 76 (182)
T PRK07313 4 ILLAVSGSIAAY---KAADLTSQLTKRGYQVTVLMTKA----ATKFITPLTLQVLSKNPVHLDVMDEHDPKLMNHIELAK 76 (182)
T ss_pred EEEEEeChHHHH---HHHHHHHHHHHCCCEEEEEEChh----HHHHcCHHHHHHHhCCceEeccccccccCCcccccccc
Confidence 556556664332 23456666666677665444332 1122332222333332 33322322 112222
Q ss_pred cCcceeeeeccCcchhhHh-------------hhc--CCceeecccc----cch---hhhHHHHHhhhcceeeecCC---
Q 012083 360 HPSVACYLTHCGWNSTMEG-------------ISM--GVPFLCWPWG----HDH---LYIKSCICDDWKIGLWLEPD--- 414 (471)
Q Consensus 360 ~~~~~~~ItHgG~~s~~ea-------------l~~--GvP~l~~P~~----~DQ---~~na~~v~~~~G~G~~~~~~--- 414 (471)
.++ ..+|.-+-.||+.-. +.. ++|+++.|-. .+. ..|..++.+ +|+=+.-...
T Consensus 77 ~aD-~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~l 154 (182)
T PRK07313 77 RAD-LFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLL 154 (182)
T ss_pred ccC-EEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCcc
Confidence 222 246777776654322 444 8999999952 222 457788888 5755444321
Q ss_pred ------CCCCcCHhHHHHHHHHHhC
Q 012083 415 ------DNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 415 ------~~~~~~~~~l~~~i~~ll~ 433 (471)
.....+.++|.+.+.+.+.
T Consensus 155 a~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 155 ACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred ccCCccCCCCCCHHHHHHHHHHHhc
Confidence 1234456778777777653
No 332
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=52.45 E-value=30 Score=29.13 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=28.6
Q ss_pred EEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEc
Q 012083 288 VIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVR 323 (471)
Q Consensus 288 vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 323 (471)
.+|+++||........++..+.++.+.+..-++.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 799999998887788899999999888764444443
No 333
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=52.41 E-value=2.3e+02 Score=28.43 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=62.9
Q ss_pred HHHHHHHHHh-CCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCC-CCCC--------------CCcccH
Q 012083 34 LMKLAHRLAD-CRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDG-LEPE--------------DDRKDE 97 (471)
Q Consensus 34 ~~~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~--------------~~~~~~ 97 (471)
+-.+++.+.+ .|..+++-++.+..+.++.+ .+.+..+-.+ .... .++..+
T Consensus 45 v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gA--------------DfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~ 110 (437)
T cd05298 45 VAEAVKILFKENYPEIKFVYTTDPEEAFTDA--------------DFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGP 110 (437)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCHHHHhCCC--------------CEEEEEeeeCCchHHHHHHhHHHHcCcceecCccH
Confidence 4455666654 36667766666666555533 3434333211 1110 123344
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHH---HHHHHc-CCceEEEeCchHHHH
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWAL---QVAAKL-ELKKASIYTSAPGIL 162 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~---~~A~~l-giP~v~~~~~~~~~~ 162 (471)
..++..++ .-+.+.++++.+++ ..||.++....-+... .+.+.+ ++.++.++.++....
T Consensus 111 GG~~~alR--tip~~~~i~~~i~~----~~pda~lin~tNP~~~vt~~~~~~~~~~kviGlC~~~~~~~ 173 (437)
T cd05298 111 GGFAYGLR--SIGPMIELIDDIEK----YSPDAWILNYSNPAAIVAEALRRLFPNARILNICDMPIAIM 173 (437)
T ss_pred HHHHHHHh--hHHHHHHHHHHHHH----HCCCeEEEEecCcHHHHHHHHHHHCCCCCEEEECCcHHHHH
Confidence 55555544 45567788888887 7799988877666443 233344 578999998877643
No 334
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=52.31 E-value=26 Score=32.93 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=34.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
|||.|.-=|+-|=..-.+.||.+|+++|++|.++=.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 589999999999999999999999999999998855444
No 335
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=52.19 E-value=37 Score=29.63 Aligned_cols=49 Identities=18% Similarity=0.005 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCC--cchHHHHHHHcCC-ceEEEeCchH
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVT--FGWALQVAAKLEL-KKASIYTSAP 159 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~--~~~~~~~A~~lgi-P~v~~~~~~~ 159 (471)
...++++.+++.+++ ++||+||+=.. ...|..++..||+ |..++-...+
T Consensus 13 ~~~~~~lA~kI~~s~--~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 13 HRLCRALAEKIRASG--FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHHHcC--CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 345667777777666 99999998764 3378899999999 7776655443
No 336
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=52.10 E-value=19 Score=31.18 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=32.1
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
||++-..|+.|-+.- ..+.+.|.++|++|.++.++.....+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 355555565555554 789999999999999999988877665
No 337
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=51.81 E-value=1.1e+02 Score=31.54 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=23.0
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||++|.+. .+..+|+.+|||++.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 7999999884 46778999999999864
No 338
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=51.56 E-value=22 Score=30.67 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=31.9
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
||++...|+.|=+ -...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtGs~~a~-~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTGSIAAY-KAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcCHHHHH-HHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 6766666655544 55699999999999999999887665554
No 339
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=51.56 E-value=21 Score=33.62 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
|||+|+.+|..+ ...-++|.++||+|.-+.+...+
T Consensus 2 mkivF~GTp~fa-----~~~L~~L~~~~~eivaV~Tqpdk 36 (307)
T COG0223 2 MRIVFFGTPEFA-----VPSLEALIEAGHEIVAVVTQPDK 36 (307)
T ss_pred cEEEEEcCchhh-----HHHHHHHHhCCCceEEEEeCCCC
Confidence 899999888654 55677888899999876665544
No 340
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=50.98 E-value=26 Score=32.33 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=32.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|+|.+..=|+-|-..-...||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5888888889999999999999999999999887433
No 341
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=50.70 E-value=2.1e+02 Score=30.78 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 19 HVLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 19 ~Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
.|.+.+.. ..|=..-.+.|++.|.++|.+|-++=+-.. + ++ .....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~---------------------~----p~--------~~~~~ 50 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ---------------------P----PL--------TMSEV 50 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc---------------------C----CC--------CHHHH
Confidence 45555444 468889999999999999999998643111 1 00 00000
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc---------hHHHHHHHcCCceEEEeCch
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG---------WALQVAAKLELKKASIYTSA 158 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~---------~~~~~A~~lgiP~v~~~~~~ 158 (471)
...+.. ......++.+++.+.... .+.|+||+|.... ....+|+.++.|++.+....
T Consensus 51 ~~~~~~--~~~~~~~~~I~~~~~~l~--~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 51 EALLAS--GQLDELLEEIVARYHALA--KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHHHhc--cCChHHHHHHHHHHHHhc--cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 000000 001122233333332212 5899999887643 24678999999999998765
No 342
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=50.29 E-value=29 Score=31.87 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=25.8
Q ss_pred CCeeEEEECCCcc------hHHHHHHHcCCceEEEeCc
Q 012083 126 EKITCVIADVTFG------WALQVAAKLELKKASIYTS 157 (471)
Q Consensus 126 ~~pD~vV~D~~~~------~~~~~A~~lgiP~v~~~~~ 157 (471)
..||+|++...+. -+..+|+.||+|++.....
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 6799999876554 4678999999999997654
No 343
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=50.29 E-value=1.5e+02 Score=24.60 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=31.4
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
|++...++.|=...+..++..|.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 677888899999999999999999999998887553
No 344
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=48 Score=32.60 Aligned_cols=43 Identities=33% Similarity=0.400 Sum_probs=37.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
.=||+-.-|+-|--.=++.++..|+++| .|.+++.+.....++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 3477888889999999999999999999 999999988776554
No 345
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=50.08 E-value=29 Score=30.65 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=26.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
|+++++-.+-.| .+||+.|+..||+|++.+.....
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCChh
Confidence 777777665444 57899999999999999765443
No 346
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=50.04 E-value=57 Score=31.47 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=59.2
Q ss_pred cEEEEEcCCCcc---c--HHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCC
Q 012083 18 VHVLLVSFPAQG---H--VASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPED 92 (471)
Q Consensus 18 ~~Il~~~~~~~G---H--~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (471)
.-|+|.|..+.| + ..-+..|++.|.+.|+.|.+.+.+.-.+..++... . .+.....
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~------------~-----~~~~~~~-- 241 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILA------------A-----LNTEQQA-- 241 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHH------------h-----ccccccc--
Confidence 346777744322 2 23478999999988999999888766555543210 0 0000000
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
. ...+. ..-.+.++..-+ .+.|++|+... +..++|..+|+|+|.++.
T Consensus 242 ---~----~~~l~--g~~sL~el~ali------~~a~l~I~nDT--Gp~HlAaA~g~P~valfG 288 (348)
T PRK10916 242 ---W----CRNLA--GETQLEQAVILI------AACKAIVTNDS--GLMHVAAALNRPLVALYG 288 (348)
T ss_pred ---c----eeecc--CCCCHHHHHHHH------HhCCEEEecCC--hHHHHHHHhCCCEEEEEC
Confidence 0 00000 011133333333 46788987644 678999999999999865
No 347
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.95 E-value=1.4e+02 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCcch---HHHHHHHcCCceEE
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTFGW---ALQVAAKLELKKAS 153 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~---~~~~A~~lgiP~v~ 153 (471)
.+..+.+++.| .+-++.+.|..+.+ +..+|...|||++.
T Consensus 137 ~~aM~~~m~~L------k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEAL------KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH------HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 44566777766 46789999988773 46789999999998
No 348
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=49.92 E-value=25 Score=33.08 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.3
Q ss_pred ceeeeeccCcchhhHhhhc----CCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGISM----GVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+-||-||++++++. ++|++.+- .- .+|-. ..++.+++.+.+.++++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn--------~G------~lGFL------~~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGIN--------HG------RLGFI------TDIPLDDMQETLPPMLAGN 120 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEc--------CC------Ccccc------ccCCHHHHHHHHHHHHcCC
Confidence 4459999999999999774 67887773 11 12222 2246678888888887653
No 349
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=49.91 E-value=1.3e+02 Score=26.05 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=74.5
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHh-CCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC-----------
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLAD-CRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD----------- 86 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~-rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------- 86 (471)
+|.++=. -.-.+.-+..+++.+.+ .|.++.+-++.+.++.++.+ .+-+..+-.
T Consensus 30 ei~L~Di-d~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gA--------------DfVi~~irvGg~~~r~~De~ 94 (183)
T PF02056_consen 30 EIVLMDI-DEERLEIVERLARRMVEEAGADLKVEATTDRREALEGA--------------DFVINQIRVGGLEAREIDEE 94 (183)
T ss_dssp EEEEE-S-CHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTE--------------SEEEE---TTHHHHHHHHHH
T ss_pred EEEEEcC-CHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCC--------------CEEEEEeeecchHHHHHHHH
Confidence 4444432 23566677788888875 58999988888888877744 444444431
Q ss_pred -----CCCC-CCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchH---HHHHHHcC-CceEEEeC
Q 012083 87 -----GLEP-EDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWA---LQVAAKLE-LKKASIYT 156 (471)
Q Consensus 87 -----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~---~~~A~~lg-iP~v~~~~ 156 (471)
++.. ..+.-....++..++ .-+.+.++.+.+++ .-||.-+....-+.+ ..+.+..+ ++.|.++.
T Consensus 95 Ip~k~Gi~~~~~eT~G~GG~~~alR--tipv~~~ia~~i~~----~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh 168 (183)
T PF02056_consen 95 IPLKYGIVGTIQETVGPGGFFRALR--TIPVMLDIARDIEE----LCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCH 168 (183)
T ss_dssp TGGCCTTT-BTTSSSTHHHHHHHHH--HHHHHHHHHHHHHH----HTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-S
T ss_pred HHHHhCCccccccccCccHHHHHHh--hHHHHHHHHHHHHH----hCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECC
Confidence 1111 023334555555554 45567777777777 678888888776644 34555676 99999998
Q ss_pred chHHH
Q 012083 157 SAPGI 161 (471)
Q Consensus 157 ~~~~~ 161 (471)
++...
T Consensus 169 ~~~~~ 173 (183)
T PF02056_consen 169 GPQGT 173 (183)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 76553
No 350
>PLN02712 arogenate dehydrogenase
Probab=49.58 E-value=1.1e+02 Score=32.76 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
++|+|+|+..|..| ..+|+.|.++||+|+.+......
T Consensus 51 ~~~kIgIIG~G~mG-----~slA~~L~~~G~~V~~~dr~~~~ 87 (667)
T PLN02712 51 TQLKIAIIGFGNYG-----QFLAKTLISQGHTVLAHSRSDHS 87 (667)
T ss_pred CCCEEEEEccCHHH-----HHHHHHHHHCCCEEEEEeCCHHH
Confidence 46899999755444 36788999999999887765443
No 351
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.53 E-value=2.1e+02 Score=26.32 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeCchHHH
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYTSAPGI 161 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~ 161 (471)
.+.++.+.+++ .+..+|+++.... .+-.+|+..|+|.+.+.+....+
T Consensus 205 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y 253 (266)
T cd01018 205 DLKRLIDLAKE----KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADW 253 (266)
T ss_pred HHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHH
Confidence 34455555555 8999999998766 55679999999999887665443
No 352
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=49.20 E-value=1.6e+02 Score=26.23 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=54.8
Q ss_pred CcccHHHHH---HHHHHHHhCCCeEEEEeCCcch-hhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHH
Q 012083 27 AQGHVASLM---KLAHRLADCRIKVTFVTTEFIC-ERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTR 102 (471)
Q Consensus 27 ~~GH~~p~~---~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
-.||+.+.+ -+++-|+.+|++|.+++.-... +.+...-. . ...+..++.+
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~----------~----------------~g~~p~e~~~ 88 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR----------E----------------EGLSWKEVAD 88 (213)
T ss_pred ccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH----------H----------------cCCCHHHHHH
Confidence 458988765 4577777789999998765443 33333210 0 1122333333
Q ss_pred HHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEE
Q 012083 103 SISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKAS 153 (471)
Q Consensus 103 ~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~ 153 (471)
. ..+.+++.++.+.- ..||..+---+.-|++.+.+.+|-|+=+
T Consensus 89 ~----~~~~f~~~~~~l~i----~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 89 Y----YTKEFFEDMKALNV----LPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred H----HHHHHHHHHHHcCC----CCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 3 34445566666542 3447777665555888888888876644
No 353
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=48.82 E-value=42 Score=28.31 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchh-HHhhCCCcEEE-ec-
Q 012083 275 TCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGL-VAKVADFGKMV-KW- 351 (471)
Q Consensus 275 ~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~-~~~~~~nv~~~-~~- 351 (471)
++-++|.+.. ...++ |. .........++..+.+.+++ ..+|... ..+......+. ++
T Consensus 22 ~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~vi------------GVlp~~l~~~~~~~~~~i~~~~~ 81 (159)
T TIGR00725 22 RLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVV------------GILPDEDFAGNPYLTIKVKTGMN 81 (159)
T ss_pred HHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEE------------EECChhhccCCCCceEEEECCCc
Q ss_pred cchhhhhccCcceeeeeccCcchhhHh---hhcCCceeecc
Q 012083 352 APQEKVLAHPSVACYLTHCGWNSTMEG---ISMGVPFLCWP 389 (471)
Q Consensus 352 vpq~~lL~~~~~~~~ItHgG~~s~~ea---l~~GvP~l~~P 389 (471)
.+...++...+-..++--||.||..|. +.+++|+++++
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~ 122 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLR 122 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEE
No 354
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=48.82 E-value=1.9e+02 Score=28.39 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
..|+++.. +-.....|++.|.+.|-+|..+......+...+...... ... ...+.. ..+
T Consensus 271 g~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~-----~~~-~~~v~~----------~~~ 329 (398)
T PF00148_consen 271 GKRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLL-----EES-DPEVII----------DPD 329 (398)
T ss_dssp T-EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHH-----HTT-CSEEEE----------SCB
T ss_pred CceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHh-----hCC-CcEEEe----------CCC
Confidence 35777743 336667899999999999888766655433221100000 000 001110 001
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
...++++++. .+||+++.+.. ...+|+++++|++.+.
T Consensus 330 ------------~~~~~~~l~~-------~~pdl~ig~~~---~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 330 ------------PEEIEELLEE-------LKPDLLIGSSH---ERYLAKKLGIPLIRIG 366 (398)
T ss_dssp ------------HHHHHHHHHH-------HT-SEEEESHH---HHHHHHHTT--EEE-S
T ss_pred ------------HHHHHHHHHh-------cCCCEEEechh---hHHHHHHhCCCeEEEe
Confidence 1224455555 79999999844 6778899999998864
No 355
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.74 E-value=45 Score=27.86 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=34.7
Q ss_pred HHHHHHHHhc--ccCCCCeeEEEECCCcc----------hHHHHHHHcCCceEEEeCchHH
Q 012083 112 LEELIQKINQ--QEEDEKITCVIADVTFG----------WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 112 ~~~ll~~l~~--~~~~~~pD~vV~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
++.++.+++. -| ..||+|++..-+- -+..+|+++|+|++-++.....
T Consensus 109 vrnWlSQL~~hAYc--E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYC--ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHHHHHhhcc--CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 4666776654 45 7999999876432 3567999999999998776544
No 356
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=48.72 E-value=1.1e+02 Score=30.44 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=27.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
|||+++-.+..+| .|++++++.|+.+++++.+.+..
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~~ 36 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNAG 36 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCHH
Confidence 5899998877754 67888888888888876665543
No 357
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=48.57 E-value=1.8e+02 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTT 53 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~ 53 (471)
++|||+++..+..+. +.+|.++.... +++|.++.+
T Consensus 88 ~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~vis 124 (286)
T PRK13011 88 ARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVS 124 (286)
T ss_pred cCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEE
Confidence 468999999886443 34555555433 688887644
No 358
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.47 E-value=1.7e+02 Score=24.90 Aligned_cols=90 Identities=16% Similarity=0.118 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcc-hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccHHH
Q 012083 34 LMKLAHRLADCRIKVTFVTTEFI-CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYL 112 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (471)
+..|.+...++|..|.+++...- .+.+.+... ...++++++....+.- .....
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~--------~~yP~l~ivg~~~g~f------------------~~~~~ 90 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLR--------RRYPGLRIVGYHHGYF------------------DEEEE 90 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH--------HHCCCeEEEEecCCCC------------------ChhhH
Confidence 45666666778999999987653 232222211 3346888876533321 12224
Q ss_pred HHHHHHHhcccCCCCeeEEEECCCcc----hHHHHHHHcCCceEE
Q 012083 113 EELIQKINQQEEDEKITCVIADVTFG----WALQVAAKLELKKAS 153 (471)
Q Consensus 113 ~~ll~~l~~~~~~~~pD~vV~D~~~~----~~~~~A~~lgiP~v~ 153 (471)
+++++.+.. .+||+|++-.-++ |.....+.++.+++.
T Consensus 91 ~~i~~~I~~----~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 91 EAIINRINA----SGPDIVFVGLGAPKQERWIARHRQRLPAGVII 131 (172)
T ss_pred HHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 455555655 8999999988766 677778888888333
No 359
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=48.40 E-value=28 Score=28.29 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 30 HVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 30 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
.+--.+=++..|.++||+|++++++.....++-+
T Consensus 12 q~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 12 QTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 3444677899999999999999999988877755
No 360
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.30 E-value=1.7e+02 Score=24.73 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred ceeeeeccCcc------hhhHhhhcCCceeecc
Q 012083 363 VACYLTHCGWN------STMEGISMGVPFLCWP 389 (471)
Q Consensus 363 ~~~~ItHgG~~------s~~eal~~GvP~l~~P 389 (471)
..++++|+|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488988854 7889999999999996
No 361
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=48.20 E-value=20 Score=35.34 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=63.6
Q ss_pred EEEEEc-CCCcccHHHHHHHHHHHHhCCCeEE-EEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCccc
Q 012083 19 HVLLVS-FPAQGHVASLMKLAHRLADCRIKVT-FVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKD 96 (471)
Q Consensus 19 ~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 96 (471)
+|++.. ..+.|-..-.+.|.++|++||++|. |=+.|++.+--- +..-.+.+..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~--------------------H~~atG~~sr----- 56 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGY--------------------HTAATGRPSR----- 56 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchh--------------------hhHhhCCccC-----
Confidence 344443 4466899999999999999999998 446666654221 1111111111
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCC------------cchHHHHHHHcCCceEEEeCchHHHH
Q 012083 97 EAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVT------------FGWALQVAAKLELKKASIYTSAPGIL 162 (471)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~------------~~~~~~~A~~lgiP~v~~~~~~~~~~ 162 (471)
.++.++ ...+.+++++.+-. ...|+.|++.. ....+++|+.+|+|+|.+........
T Consensus 57 ---NLD~~m-m~~~~v~~~f~~~~-----~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~ 125 (451)
T COG1797 57 ---NLDSWM-MGEEGVRALFARAA-----ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSR 125 (451)
T ss_pred ---CCchhh-cCHHHHHHHHHHhc-----CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhH
Confidence 112221 12233444444322 35555554322 23578999999999999987665543
No 362
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.16 E-value=38 Score=32.17 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
+|||.|+..|..| .++|+.|.++||+|++.....
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 4799999777666 478999999999999887653
No 363
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=48.00 E-value=65 Score=32.53 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=35.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
.-+++...|+.|=..-++.++..+.++|+.|.+++.....+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 34677778899999999999999999999999999876655443
No 364
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=47.89 E-value=1.2e+02 Score=28.77 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCcc--cH--HHHHHHHHHHHhCCCeEEEE-eCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC
Q 012083 17 NVHVLLVSFPAQG--HV--ASLMKLAHRLADCRIKVTFV-TTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE 91 (471)
Q Consensus 17 ~~~Il~~~~~~~G--H~--~p~~~La~~L~~rGh~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (471)
+..|++.|..+.. .+ .-+..|++.|.++|..+.+. +++...+...+... .++..
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~-----------------~~~~~---- 237 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAE-----------------ALPGA---- 237 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHh-----------------hCCCC----
Confidence 3467777765332 22 34778999999889988876 44333333332210 00000
Q ss_pred CCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 92 DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
+ +. ....+.++..-+ .+.|++|+... +..++|..+|+|++.++.
T Consensus 238 ----~-------l~--g~~sL~el~ali------~~a~l~I~~DS--gp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 238 ----V-------VL--PKMSLAEVAALL------AGADAVVGVDT--GLTHLAAALDKPTVTLYG 281 (319)
T ss_pred ----e-------ec--CCCCHHHHHHHH------HcCCEEEeCCC--hHHHHHHHcCCCEEEEEC
Confidence 0 00 011233333333 47889997644 678999999999999874
No 365
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=47.83 E-value=2.1e+02 Score=25.71 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.9
Q ss_pred cEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEE
Q 012083 18 VHVLLVSFP--AQGHVASLMKLAHRLADCRIKVTFV 51 (471)
Q Consensus 18 ~~Il~~~~~--~~GH~~p~~~La~~L~~rGh~Vt~~ 51 (471)
||.+|++.- .-|=.....+|+++|+.+|++|...
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 677777754 4488889999999999999999865
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=47.71 E-value=27 Score=32.05 Aligned_cols=118 Identities=11% Similarity=0.109 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC--CC--CCCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD--GL--EPED 92 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~--~~~~ 92 (471)
...|.|...|+-|--.-.-.|++.|.++||+|-+++.++....---+ ...+.++...+.. +. .+..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA----------lLGDRiRM~~~~~d~~vfIRS~a 98 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA----------LLGDRIRMQELSRDPGVFIRSMA 98 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC-------------SS--GGGCHHHHTSTTEEEEEE-
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc----------ccccHHHhcCcCCCCCEEEeecC
Confidence 46889999999999999999999999999999998776654432211 1112222222110 00 0001
Q ss_pred CcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeC
Q 012083 93 DRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYT 156 (471)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~ 156 (471)
....+....... .+ .-.+++. ..+|+||++..-. .-..++.....-++.+.|
T Consensus 99 tRG~lGGls~~t----~~-~v~ll~a-------aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 99 TRGSLGGLSRAT----RD-AVRLLDA-------AGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp --SSHHHHHHHH----HH-HHHHHHH-------TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred cCCCCCCccHhH----HH-HHHHHHH-------cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 222222222221 11 2233444 8999999997765 345677777766666554
No 367
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.60 E-value=4e+02 Score=28.88 Aligned_cols=122 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCcEEEEEcCC--CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCC---------------ccCCCCCC
Q 012083 16 TNVHVLLVSFP--AQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFS---------------EMGDAQQL 78 (471)
Q Consensus 16 ~~~~Il~~~~~--~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 78 (471)
++.|++.++.. +-|=..-...||..|+..|++|.++-.+.....+.......... ......++
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 608 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGG 608 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCC
Confidence 34566655544 66778889999999999999999986654433332221000000 00001123
Q ss_pred eEEEeCCCCCCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcch----HHHHHHHcCCceEEE
Q 012083 79 VRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGW----ALQVAAKLELKKASI 154 (471)
Q Consensus 79 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~----~~~~A~~lgiP~v~~ 154 (471)
+.+.+... ...+..+.+ ....++++++.++ .++|+||+|.-... +..+|...+.-++.+
T Consensus 609 l~vl~~g~------~~~~p~ell------~~~~~~~ll~~l~-----~~yD~IIIDtPP~~~~~Da~~la~~ad~~llVv 671 (726)
T PRK09841 609 FDVITRGQ------VPPNPSELL------MRDRMRQLLEWAN-----DHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVA 671 (726)
T ss_pred EEEEeCCC------CCCCHHHHh------CcHHHHHHHHHHH-----hcCCEEEEeCCCccccchHHHHHHhCCeEEEEE
Confidence 33332211 112222222 2345677777765 48999999975442 456666666554443
No 368
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=47.50 E-value=31 Score=29.72 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
+..++|...++.|=..-..++|+++.++|+.|.|+..+...+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 457899999999987789999999999999999999877766665
No 369
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.46 E-value=84 Score=31.27 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHH-HhCCCeEEEEeCCcchhhh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRL-ADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L-~~rGh~Vt~~~~~~~~~~~ 60 (471)
+..|+|+..++.|=..-+..||..+ ..+|+.|.+++.+.++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 3457788788999999999999876 6789999999998876543
No 370
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=47.38 E-value=69 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCC
Q 012083 33 SLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 33 p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
.+-.+...+.++|++|++++-.
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t 34 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLT 34 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE
T ss_pred hhHHHHHHHHhcCCeEEEEEec
Confidence 4455667788899999877543
No 371
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=47.26 E-value=81 Score=29.70 Aligned_cols=104 Identities=12% Similarity=-0.042 Sum_probs=56.7
Q ss_pred cceeccccCCCCCCCCCCcCcchhcccccCCCCCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCC
Q 012083 253 IIPVGPLIANGQPTGNFWSEDLTCLSWLDKQPPGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSST 332 (471)
Q Consensus 253 ~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 332 (471)
-+++|....++.. ......++.++..+..-+.+-+-........+...+..+.+++++++..+++-++.......
T Consensus 98 drf~~~~~v~p~~---~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~-- 172 (293)
T COG2159 98 DRFVGFARVDPRD---PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAG-- 172 (293)
T ss_pred cceeeeeeeCCCc---hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcc--
Confidence 3666666666542 11233455566655332222222223323445556788999999999999987665411000
Q ss_pred CCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccC
Q 012083 333 NNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCG 371 (471)
Q Consensus 333 ~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG 371 (471)
+... ....+.=......+|+++.++.|+|
T Consensus 173 -~~~~---------~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 173 -LEKG---------HSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred -cccC---------CCCchHHHHHHHHCCCCcEEEEecC
Confidence 0000 0001111334667799999999999
No 372
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=47.10 E-value=1.3e+02 Score=28.30 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=33.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
..|+|...++.|=..-+..|+..|.++|+.|.++......
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 5667777789999999999999999999999988776543
No 373
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=46.85 E-value=1.9e+02 Score=24.93 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=28.3
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEe
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVT 52 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~ 52 (471)
--|.+++..+.|=....+.+|-+-+-+|.+|.++-
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQ 56 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ 56 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEE
Confidence 45778888999999888888877777888888773
No 374
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=46.83 E-value=29 Score=34.14 Aligned_cols=46 Identities=20% Similarity=0.112 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
++||++...|+.+= .-...+.+.|.+.|++|.++.++.....+...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 46888887776655 44899999999999999999998877766543
No 375
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=46.83 E-value=1.4e+02 Score=23.32 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 30 HVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 30 H~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+=.-++.+|+.|.+.|+++. +++.....+.+.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i~--AT~gTa~~L~~~ 41 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPLF--ATGGTSRVLADA 41 (112)
T ss_pred cHHHHHHHHHHHHHCCCEEE--ECcHHHHHHHHc
Confidence 34557899999999999983 455666667665
No 376
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=46.78 E-value=22 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
+||.|+-.+..| .++|+.|.++||+|++.-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 899999988666 5789999999999998753
No 377
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=46.49 E-value=29 Score=32.99 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=32.0
Q ss_pred cEEEEEcCCCc---ccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVSFPAQ---GHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~~~~~---GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
|||+|+.-|.. -+..-..+|..+.++|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 58988886532 35567889999999999999999987654
No 378
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.43 E-value=32 Score=32.31 Aligned_cols=53 Identities=8% Similarity=-0.015 Sum_probs=35.9
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+-||-||++.+.+ .++|++.+- .-+ +| -. ..++.+++.+++.++++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN--------~G~----lG--FL------t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIH--------AGH----LG--FL------TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEe--------CCC----cc--cC------CcCCHHHHHHHHHHHHcCC
Confidence 445999999999998866 377887772 111 22 21 2346678888888888653
No 379
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=46.28 E-value=2.5e+02 Score=26.88 Aligned_cols=100 Identities=14% Similarity=0.043 Sum_probs=56.7
Q ss_pred cEEEEEcCCCcc----cHHHHHHHHHHHHhCCCeEEEEeCCcchh--hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC
Q 012083 18 VHVLLVSFPAQG----HVASLMKLAHRLADCRIKVTFVTTEFICE--RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE 91 (471)
Q Consensus 18 ~~Il~~~~~~~G----H~~p~~~La~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 91 (471)
..|++.|..+.. ...-+..|++.|.++|.+|.+++.+...+ .+.+... .. +. .
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~------------~~-----~~----~ 240 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQ------------GC-----QT----P 240 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHh------------hC-----CC----C
Confidence 356676654322 23457789999988899998887754322 2222100 00 00 0
Q ss_pred CCcccHHHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 92 DDRKDEAKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
. ...+ .....+.++..-+ .+.|++|+.. .+..++|..+|+|+|.++.
T Consensus 241 ----~----~~~l--~g~~sL~el~ali------~~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 241 ----R----VTSL--AGKLTLPQLAALI------DHARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred ----c----cccc--CCCCCHHHHHHHH------HhCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 0 0000 0111233444433 4678999764 4688999999999999865
No 380
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=45.97 E-value=64 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=22.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 012083 434 NDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQITE 471 (471)
Q Consensus 434 ~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~~ 471 (471)
.++-.+.+.++.+++.+ |=||-.++....++|.|
T Consensus 10 HeeQQ~AvE~Iq~LMaq----GmSsgEAI~~VA~~iRe 43 (51)
T PF03701_consen 10 HEEQQQAVERIQELMAQ----GMSSGEAIAIVAQEIRE 43 (51)
T ss_pred HHHHHHHHHHHHHHHHh----cccHHHHHHHHHHHHHH
Confidence 34455566666666655 77887887777776653
No 381
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=45.94 E-value=1.1e+02 Score=31.37 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=23.0
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||+|+.+. ....+|+++|||++.++
T Consensus 373 ~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 373 VEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred cCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 7999999986 45667899999998876
No 382
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=45.86 E-value=2.2e+02 Score=28.71 Aligned_cols=106 Identities=10% Similarity=0.090 Sum_probs=59.5
Q ss_pred EEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCC-cchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 20 VLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVTTE-FICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 20 Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|++.... ..|=..-..+|++.|+++|++|..+=+. ++.+...-... .+.. .. ++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D~~~~~~~-----------~g~~---------~~----~l 57 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYIDPMFHTQA-----------TGRP---------SR----NL 57 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCCHHHHHHH-----------hCCc---------hh----hC
Confidence 4444333 4577889999999999999999987432 11111000000 0100 00 00
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCc------------chHHHHHHHcCCceEEEeCchH
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTF------------GWALQVAAKLELKKASIYTSAP 159 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~------------~~~~~~A~~lgiP~v~~~~~~~ 159 (471)
..+. ...+.+++.+..+. .+.|++|++... ....++|+.++.|++.+.....
T Consensus 58 ----d~~~-~~~~~i~~~~~~~~-----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 58 ----DSFF-MSEAQIQECFHRHS-----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred ----Cccc-CCHHHHHHHHHHhc-----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 0000 11233444444432 478999977651 1367899999999999987653
No 383
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=45.45 E-value=33 Score=33.89 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+++||++...|+.+ ..=...+.+.|.+.|++|.++.++.....+..
T Consensus 5 ~~k~IllgvTGsia-a~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 5 AGKRIVLGVSGGIA-AYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 45788888777664 44678899999999999999999887766654
No 384
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.93 E-value=32 Score=32.59 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=38.0
Q ss_pred cceeeeeccCcchhhHhhhc----CCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 362 SVACYLTHCGWNSTMEGISM----GVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 362 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
.++++|+=||-||++.+.+. ++|++.+- .- .+|-. ..++.+++.+++.+++++.
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN--------~G------~lGFL------t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTIN--------TG------HLGFL------TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEe--------CC------CCccc------ccCCHHHHHHHHHHHHcCC
Confidence 45669999999999999774 78988872 11 12211 2245688888888888764
No 385
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=44.93 E-value=45 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=22.1
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~ 155 (471)
.+||+||.... ...+|+++|||++.+.
T Consensus 357 ~~pdliig~s~---~~~~a~~lgip~~~~~ 383 (415)
T cd01977 357 LKPDIILTGPR---VGELVKKLHVPYVNIH 383 (415)
T ss_pred cCCCEEEecCc---cchhhhhcCCCEEecc
Confidence 79999998854 3468999999999863
No 386
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=44.86 E-value=38 Score=31.25 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=31.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
|+|.+..=|+-|=..-++.||..|+++|++|.++=.
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~ 36 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGC 36 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEec
Confidence 478888778889999999999999999999998833
No 387
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=44.85 E-value=37 Score=29.17 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=28.2
Q ss_pred cccHHH-HHHHHHHHHh-CCCeEEEEeCCcchhhhHH
Q 012083 28 QGHVAS-LMKLAHRLAD-CRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 28 ~GH~~p-~~~La~~L~~-rGh~Vt~~~~~~~~~~~~~ 62 (471)
.||... .+.+.++|++ +||+|.++.++.....+..
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 378766 8899999984 6999999999887765553
No 388
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=44.55 E-value=97 Score=28.00 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
..-+++...|+.|-..-.+.++.+-+++|..|.+++.....+.+.+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 4567888889999999999888776688999999998877665544
No 389
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=44.52 E-value=1.8e+02 Score=31.54 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=96.8
Q ss_pred cEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCC------------C------------CCCCCchhHHhh
Q 012083 287 SVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFING------------S------------STNNPDGLVAKV 342 (471)
Q Consensus 287 ~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~------------~------------~~~lp~~~~~~~ 342 (471)
..+|+++=-+--.+..++...++.|.+.|.|+++.+++..+.. . .+.+++.-....
T Consensus 572 ~LtFvGlVGi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~ 651 (972)
T KOG0202|consen 572 DLTFVGLVGILDPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDA 651 (972)
T ss_pred ceEEEEEeeccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHH
Confidence 4899988777667777888899999999999999998762111 0 112333322233
Q ss_pred CCCcEEE-eccchhhhhccCcceeeeeccCcchhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCH
Q 012083 343 ADFGKMV-KWAPQEKVLAHPSVACYLTHCGWNSTMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGR 421 (471)
Q Consensus 343 ~~nv~~~-~~vpq~~lL~~~~~~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 421 (471)
..++.+. +--||..+ -+.|+|+.-.-++.+ .+|--.-|=.+..+ .+|+.... -..
T Consensus 652 ~~~~~vFaR~~P~HK~----------------kIVeaLq~~geivAM--TGDGVNDApALK~A-dIGIAMG~-----~GT 707 (972)
T KOG0202|consen 652 VRRVLVFARAEPQHKL----------------KIVEALQSRGEVVAM--TGDGVNDAPALKKA-DIGIAMGI-----SGT 707 (972)
T ss_pred hhcceEEEecCchhHH----------------HHHHHHHhcCCEEEe--cCCCccchhhhhhc-ccceeecC-----Ccc
Confidence 3444433 33455432 255666665555544 67777777777774 88888853 233
Q ss_pred hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 422 HEIKRKVDELLSNDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 422 ~~l~~~i~~ll~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
+.-.+|-+=+|.|+.+.. +-.|++||-+-+.++..||+.+.
T Consensus 708 dVaKeAsDMVL~DDnFst--------IvaAVEEGr~IynNik~Fir~~l 748 (972)
T KOG0202|consen 708 DVAKEASDMVLADDNFST--------IVAAVEEGRAIYNNIKNFIRYLL 748 (972)
T ss_pred HhhHhhhhcEEecCcHHH--------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 444556666777776543 23367778888888988888763
No 390
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.19 E-value=36 Score=30.83 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=32.0
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~~~~~~~~~ 62 (471)
|++--.|+.+=+.-.+.|.+.|.+. ||+|.++.++.....+..
T Consensus 2 i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 4444444444446889999999999 999999999877766653
No 391
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.03 E-value=46 Score=33.31 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=41.2
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
++--|.|+...+-|--.-+..||-.|.+.+|+|.++....|+.-..+
T Consensus 377 rPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvE 423 (587)
T KOG0781|consen 377 RPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE 423 (587)
T ss_pred CCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHH
Confidence 35678999999999999999999999999999999999888775443
No 392
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=43.84 E-value=3.1e+02 Score=26.51 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=124.6
Q ss_pred CCeeEEEECCCcchH-HHHHHHcCCceEEEeCchHHHHHHHhchhhhhhhCCCCCCcccccccccccCCCCCCCCccccC
Q 012083 126 EKITCVIADVTFGWA-LQVAAKLELKKASIYTSAPGILAMIMNIPKFIEAGIISSDGIVIKNEKIELSPYLPAASPAEFL 204 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~-~~~A~~lgiP~v~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 204 (471)
..||+.|-.+-++.. ...++..++|++.+...+..++.+...+-.... .+ -+.
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~-------------------s~-------~l~ 202 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQK-------------------SG-------ILV 202 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhhh-------------------cc-------hhh
Confidence 799999966655544 345668899999988776665554322110000 00 000
Q ss_pred CCCCCCCCchhHHHHHHHHHHhhh-ccCcEEEEcchhhhchhhhhhCC-CcceeccccCCCCCCCCCCcCcchhcccccC
Q 012083 205 WNCPGNPSLQTLMFQYINVIRQNI-EASDRILCTWFHELAPSANKILP-SIIPVGPLIANGQPTGNFWSEDLTCLSWLDK 282 (471)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~l~~~~~~~~~-~~~~vGp~~~~~~~~~~~~~~~~~l~~~l~~ 282 (471)
| ..-.+++.+....... .+++.+++|+.+.=..-..-|.. ...-|=|-... +++.+-...
T Consensus 203 ~-------~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~-----------e~lks~~~t 264 (465)
T KOG1387|consen 203 W-------GKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCST-----------EDLKSKFGT 264 (465)
T ss_pred h-------HHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEcCCCCH-----------HHHHHHhcc
Confidence 0 0122345555555555 67889999998864433222221 12222111111 111121112
Q ss_pred CCCCcEEEEecCccc--cCCHHHHHH--HHHHHH---hCCCCE-EEEEcCCCCCCCCCC----CCchhHH-hhCCCcEEE
Q 012083 283 QPPGSVIYAAFGSIS--KLSQQQFNE--LALGLE---LAGQPF-LCGVRPGFINGSSTN----NPDGLVA-KVADFGKMV 349 (471)
Q Consensus 283 ~~~~~vv~vs~GS~~--~~~~~~~~~--~~~al~---~~~~~~-i~~~~~~~~~~~~~~----lp~~~~~-~~~~nv~~~ 349 (471)
...+-+..+++|-.- ...+ .++- +....+ ....++ +..+++ .+.++... |.+.-.+ ++++++.+.
T Consensus 265 e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGS-cRneeD~ervk~Lkd~a~~L~i~~~v~F~ 342 (465)
T KOG1387|consen 265 EGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGS-CRNEEDEERVKSLKDLAEELKIPKHVQFE 342 (465)
T ss_pred cCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEec-cCChhhHHHHHHHHHHHHhcCCccceEEE
Confidence 223447777777541 1112 1222 222211 111222 333333 22222111 1111111 247888888
Q ss_pred eccchhhh---hccCcceeeeeccCcc-----hhhHhhhcCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCH
Q 012083 350 KWAPQEKV---LAHPSVACYLTHCGWN-----STMEGISMGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGR 421 (471)
Q Consensus 350 ~~vpq~~l---L~~~~~~~~ItHgG~~-----s~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~ 421 (471)
.-+|+.++ |..+.. =-|+=|| ++-|++++|.=+++---.+--.+. |.. + .|.... --..|.
T Consensus 343 ~N~Py~~lv~lL~~a~i---Gvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDI---V~~-~-~G~~tG---Fla~t~ 411 (465)
T KOG1387|consen 343 KNVPYEKLVELLGKATI---GVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDI---VTP-W-DGETTG---FLAPTD 411 (465)
T ss_pred ecCCHHHHHHHhcccee---ehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceee---eec-c-CCccce---eecCCh
Confidence 88998754 433322 2233343 788999999644432111100000 000 0 111111 012456
Q ss_pred hHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHH
Q 012083 422 HEIKRKVDELLSND-----VVRKNALKLKELAQKS 451 (471)
Q Consensus 422 ~~l~~~i~~ll~~~-----~~~~~a~~l~~~~~~~ 451 (471)
++-++++-+++... .+|++|+.-..++.+.
T Consensus 412 ~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 412 EEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 67777777777542 4677777766666553
No 393
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=43.74 E-value=74 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=21.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEE
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFV 51 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~ 51 (471)
||||++..++..| +|+++|.+. |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE
Confidence 5999999997777 599999886 4433333
No 394
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=43.72 E-value=1.1e+02 Score=29.67 Aligned_cols=29 Identities=10% Similarity=0.120 Sum_probs=23.9
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
.+.|++|+... +..++|..+|+|+|.++.
T Consensus 261 ~~a~l~v~nDS--Gp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 261 DHAQLFIGVDS--APAHIAAAVNTPLICLFG 289 (352)
T ss_pred HhCCEEEecCC--HHHHHHHHcCCCEEEEEC
Confidence 46789997644 678999999999999874
No 395
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=43.60 E-value=2.9e+02 Score=26.15 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred cEEEEEcCCCc--ccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVSFPAQ--GHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~--GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
|+||+....++ || .+.+|.++||+|+++=.
T Consensus 1 ~~iLVtGGAGYIGSH------tv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 1 MKVLVTGGAGYIGSH------TVRQLLKTGHEVVVLDN 32 (329)
T ss_pred CeEEEecCcchhHHH------HHHHHHHCCCeEEEEec
Confidence 46766654443 44 46788999999999843
No 396
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=43.29 E-value=2.2e+02 Score=28.04 Aligned_cols=40 Identities=30% Similarity=0.442 Sum_probs=30.6
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCC-CeEEEEeCC-cchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCR-IKVTFVTTE-FICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rG-h~Vt~~~~~-~~~~~~~~ 62 (471)
|+|+++..|.-|+ .+|..|+++| ++|++++-. ...+.+..
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~ 43 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAE 43 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHh
Confidence 7999998766664 5789999999 999999886 44444443
No 397
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=43.28 E-value=40 Score=31.57 Aligned_cols=74 Identities=9% Similarity=0.188 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhH
Q 012083 298 KLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTME 377 (471)
Q Consensus 298 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~e 377 (471)
..+.+..+.+.+|+.....+.||.+.+.- +-.++.+++....+-++|+. ||=..-..+++-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-----------------ga~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY-----------------GANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC-----------------CHHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 44666788899999999999999998761 11223455555555566665 666666666666
Q ss_pred hhhc--CCceeeccc
Q 012083 378 GISM--GVPFLCWPW 390 (471)
Q Consensus 378 al~~--GvP~l~~P~ 390 (471)
+++. |++.+--|.
T Consensus 106 ~l~~~~g~~t~hGp~ 120 (282)
T cd07025 106 ALYAKTGLVTFHGPM 120 (282)
T ss_pred HHHHhcCceEEECcc
Confidence 6543 566655554
No 398
>PRK10586 putative oxidoreductase; Provisional
Probab=43.18 E-value=2e+02 Score=27.98 Aligned_cols=99 Identities=14% Similarity=0.012 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCC-CeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccH
Q 012083 32 ASLMKLAHRLADCR-IKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPG 110 (471)
Q Consensus 32 ~p~~~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (471)
.-+-.|++.+.+.| .++.+++.+...+......... -...++.+..+..... .+
T Consensus 20 ga~~~l~~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~------l~~~~~~~~~~~g~~~-------------------~~ 74 (362)
T PRK10586 20 GSIDHLHDFFTDEQLSRAVWIYGERAIAAAQPYLPPA------FELPGAKHILFRGHCS-------------------ES 74 (362)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEChHHHHHHHHHHHHH------HHHcCCeEEEeCCCCC-------------------HH
Confidence 35567888888877 7888888865544332111000 0011555544432211 11
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHH
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
.++++.+.. . .+.|+||.=.-.. .+-.+|..+++|++.+.+...+
T Consensus 75 ~v~~l~~~~-~----~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~a~t 122 (362)
T PRK10586 75 DVAQLAAAS-G----DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTIAAT 122 (362)
T ss_pred HHHHHHHHh-c----cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCCccc
Confidence 122222221 1 4679998543322 4556777789999999876654
No 399
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=42.88 E-value=64 Score=30.79 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=30.3
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 23 VSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 23 ~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
++.|+.|-.--.+.||++|++||..|-+++-..-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 45678899999999999999999999999876544
No 400
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.62 E-value=38 Score=31.84 Aligned_cols=53 Identities=21% Similarity=0.369 Sum_probs=37.5
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+=||-||++.+.+ .++|++.+-. -+ +|-. ..++.+++.+++++++++.
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G~------lGFL------t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINT--------GR------LGFL------ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEec--------CC------CCcc------cccCHHHHHHHHHHHHcCC
Confidence 455999999999999977 3789888721 11 2222 2346688888888888764
No 401
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.43 E-value=1.2e+02 Score=28.56 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=37.3
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++.+|+=||-||++++++ .++|++.+... + +|-. ..++.+++.+++.++++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGFl------~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGFL------TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---cccc------ccCCHHHHHHHHHHHHcCC
Confidence 445999999999999975 36788877431 1 2211 2356788889999988753
No 402
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.41 E-value=41 Score=27.74 Aligned_cols=28 Identities=39% Similarity=0.339 Sum_probs=22.5
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 36 KLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 36 ~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
-+|..|++.||+|++++.....+.+.+.
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 4688999999999999998844556655
No 403
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=42.38 E-value=1.9e+02 Score=30.86 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=22.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEE-EEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVT-FVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt-~~~~~ 54 (471)
|||+|+..+..+ +...++|.+.||+|. ++|.+
T Consensus 1 mkivf~g~~~~a-----~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDIG-----CVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCcEEEEEeCC
Confidence 589998655433 445588888999998 55544
No 404
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=42.12 E-value=1.7e+02 Score=27.23 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=57.2
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHH
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEA 98 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 98 (471)
=|++...|+.|=......|.+.|.+.|.+|.++...... +... . +. +. .-.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~---------------~-y~----------~~-~~E 53 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN---------------D-YA----------DS-KKE 53 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS---------------S-S------------G-GGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh---------------h-hh----------ch-hhh
Confidence 467888999999999999999999999999998854333 1111 0 10 01 111
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcc-h-----HHHHHHHcCCceEEEeCchHHHHHHHh
Q 012083 99 KMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFG-W-----ALQVAAKLELKKASIYTSAPGILAMIM 166 (471)
Q Consensus 99 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~-~-----~~~~A~~lgiP~v~~~~~~~~~~~~~~ 166 (471)
+.........++..+ .+-++||+|...+ - -..+|+..+.++..++...+.......
T Consensus 54 ---k~~R~~l~s~v~r~l---------s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 54 ---KEARGSLKSAVERAL---------SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp ---HHHHHHHHHHHHHHH---------TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred ---HHHHHHHHHHHHHhh---------ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 111222222233322 2338999998765 2 357999999999988776665544433
No 405
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.08 E-value=3.6e+02 Score=26.83 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
++.+|+|+..++.|=..-+..||..|..+|+.|.+++.+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 346789999999999999999999999999999999998775
No 406
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.90 E-value=40 Score=33.13 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCcchH----------HHHHHHcCCceEEEe
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTFGWA----------LQVAAKLELKKASIY 155 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~----------~~~A~~lgiP~v~~~ 155 (471)
.+..+++++.++. .+||++|+.+.+.++ ..+.++++||.+.-.
T Consensus 62 eea~~~i~~mv~k----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 62 EEAVARVLEMLKD----KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3334555555555 999999999877632 134567999998865
No 407
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.88 E-value=40 Score=33.14 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCcchH----------HHHHHHcCCceEEEe
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTFGWA----------LQVAAKLELKKASIY 155 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~----------~~~A~~lgiP~v~~~ 155 (471)
.+..+++++.++. .+||++|+.+.+.++ ..+.++++||.+.-.
T Consensus 62 eea~~~i~~mv~k----~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 62 EEAKAKVLEMIKG----ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3344556666655 999999999877632 134567999998865
No 408
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=41.70 E-value=2.9e+02 Score=26.96 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCC-CeEEEEeCCcch
Q 012083 34 LMKLAHRLADCR-IKVTFVTTEFIC 57 (471)
Q Consensus 34 ~~~La~~L~~rG-h~Vt~~~~~~~~ 57 (471)
.-.|+..|.+.| .+|.+++.....
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~ 35 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLV 35 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchh
Confidence 456777777766 678888776443
No 409
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=41.63 E-value=2.7e+02 Score=25.13 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=30.4
Q ss_pred EEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 19 HVLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 19 ~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
.|.|.. =|+.|=..-.+.||..|+++|++|.++=.+....
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 344433 3477889999999999999999999986655443
No 410
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=41.58 E-value=94 Score=28.37 Aligned_cols=105 Identities=15% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCC--CCccc-HHHHHHHHHhhccH
Q 012083 34 LMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPE--DDRKD-EAKMTRSISKVMPG 110 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~ 110 (471)
+-.+++.+.+.|-+|.+.+...+...+.... ....+-+-.+|...... .+..- ..+.+-.----..+
T Consensus 117 ~~ea~~~~~~~~~rVflt~G~~~l~~f~~~~----------~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~ 186 (257)
T COG2099 117 IEEAAEAAKQLGRRVFLTTGRQNLAHFVAAD----------AHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEE 186 (257)
T ss_pred HHHHHHHHhccCCcEEEecCccchHHHhcCc----------ccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChH
Confidence 3456666666777777777777777776542 11134333443211100 00000 00000000000223
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcch-----HHHHHHHcCCceEEEe
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFGW-----ALQVAAKLELKKASIY 155 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~~-----~~~~A~~lgiP~v~~~ 155 (471)
.=+.++++ ++.|+||+=...-. =..+|+.+|||+|.+-
T Consensus 187 ~n~all~q-------~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 187 DNKALLEQ-------YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHHH-------hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEe
Confidence 33566777 89999997654332 2579999999999974
No 411
>PRK10490 sensor protein KdpD; Provisional
Probab=41.42 E-value=1.3e+02 Score=33.54 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
+.||.|=..|+-|-...|+.-|++|+++|++|.+---..
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 689999999999999999999999999999998664443
No 412
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=41.20 E-value=63 Score=29.16 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=38.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
.+|.|..=++-|--.-...++.+|++.||+|..++-++-.+...
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr 45 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTR 45 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHH
Confidence 68999999999999999999999999999999998877666544
No 413
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=41.17 E-value=1.4e+02 Score=27.89 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCcchhh
Q 012083 35 MKLAHRLADCRIKVTFVTTEFICER 59 (471)
Q Consensus 35 ~~La~~L~~rGh~Vt~~~~~~~~~~ 59 (471)
.++|..|+++|++|.++........
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~l 27 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHSL 27 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCCH
Confidence 5788899999999999998776543
No 414
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=41.14 E-value=2.6e+02 Score=26.23 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeCC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTTE 54 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~~ 54 (471)
+++||+++..+..+.+. +|.++.... +++|..+.+.
T Consensus 88 ~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn 125 (286)
T PRK06027 88 ERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISN 125 (286)
T ss_pred cCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEc
Confidence 46899999988855554 444444442 6888766553
No 415
>PRK05114 hypothetical protein; Provisional
Probab=41.07 E-value=74 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 434 NDVVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 434 ~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.++-.+.+.++.+++++ |=||-.++....++|.
T Consensus 10 HeeQQ~AVErIq~LMaq----GmSsgEAI~~VA~eiR 42 (59)
T PRK05114 10 HEQQQKAVERIQELMAQ----GMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHHHHHHc----cccHHHHHHHHHHHHH
Confidence 34455556666666554 6677777766666654
No 416
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.94 E-value=66 Score=25.33 Aligned_cols=43 Identities=23% Similarity=0.098 Sum_probs=34.6
Q ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 20 VLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 20 Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
++..+.++..|-....-++..|.++|++|.+.......+.+.+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~ 44 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVE 44 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHH
Confidence 5667778889999999999999999999999976655444443
No 417
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=40.92 E-value=94 Score=29.58 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=29.3
Q ss_pred cCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 24 SFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 24 ~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
+.|+.|=.--.+.|++.|+++|++|.+++-..-.
T Consensus 37 tvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 37 SVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred ccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 3678899988999999999999999999886544
No 418
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=40 Score=29.99 Aligned_cols=115 Identities=9% Similarity=-0.052 Sum_probs=63.0
Q ss_pred CCcccHHHHHHHHHHHHhCCCeEEEEeCCcc-hhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHH
Q 012083 26 PAQGHVASLMKLAHRLADCRIKVTFVTTEFI-CERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSI 104 (471)
Q Consensus 26 ~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (471)
-+..|+...+.+...++.+|=.+.|+++... .+.++..-.+ ..++.+.. .+..+ ...+.......+
T Consensus 89 qT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r---------~~gy~~~~---~w~~G-~lTN~~~l~g~~ 155 (251)
T KOG0832|consen 89 QTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARR---------AGGYSHNR---KWLGG-LLTNARELFGAL 155 (251)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHH---------hcCceeee---eeccc-eeecchhhcccc
Confidence 3667888899999999999999999988754 4455544211 12333321 11111 111111111111
Q ss_pred Hhh--ccHHHHHHHHHHhcccCCCCeeEEEEC-CCcc-hHHHHHHHcCCceEEEeCchHH
Q 012083 105 SKV--MPGYLEELIQKINQQEEDEKITCVIAD-VTFG-WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 105 ~~~--~~~~~~~ll~~l~~~~~~~~pD~vV~D-~~~~-~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
... ..+-..-++.. ..+|+||+- .... .+..=|.+++||.|.+.-+...
T Consensus 156 ~~~~~~~pd~~~f~~t-------~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 156 VRKFLSLPDALCFLPT-------LTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCN 208 (251)
T ss_pred cccccCCCcceeeccc-------CCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCC
Confidence 110 01111112222 567887764 4433 7888999999999998766554
No 419
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=40.41 E-value=47 Score=31.51 Aligned_cols=48 Identities=27% Similarity=0.319 Sum_probs=39.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPL 84 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 84 (471)
|||+++..|+.|-+ +|-.|++.||+|+++.-+...+.+.+. |+.....
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l~~~--------------GL~i~~~ 48 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEALKKK--------------GLRIEDE 48 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHHHhC--------------CeEEecC
Confidence 59999999988854 688899999999999998887778766 7877754
No 420
>PLN00016 RNA-binding protein; Provisional
Probab=40.29 E-value=34 Score=33.53 Aligned_cols=39 Identities=28% Similarity=0.272 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
++||+++..-+.|+-.--..|++.|.++||+|+.++...
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 468888733333333334567899999999999988654
No 421
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=40.23 E-value=44 Score=28.74 Aligned_cols=31 Identities=19% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCeeEEEECCCcch--HHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFGW--ALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~~--~~~~A~~lgiP~v~~~~ 156 (471)
.+||+||....... ....-+..|||++.+..
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 69999998654432 34455789999988753
No 422
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=40.19 E-value=56 Score=28.65 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=29.6
Q ss_pred cEEEEEc--CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 18 VHVLLVS--FPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~--~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
+|++.++ -++-|=..-...||..|+++|++|.++=.....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4554444 346678888999999999999999988554433
No 423
>PRK08309 short chain dehydrogenase; Provisional
Probab=40.16 E-value=2.4e+02 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.447 Sum_probs=22.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|+++++. ++ | + ..++++.|.++|++|++++..
T Consensus 1 m~vlVtG-Gt-G-~--gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIG-GT-G-M--LKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEEC-cC-H-H--HHHHHHHHHHCcCEEEEEECC
Confidence 3655554 33 5 2 246999999999999988654
No 424
>PHA02754 hypothetical protein; Provisional
Probab=39.81 E-value=45 Score=22.31 Aligned_cols=26 Identities=8% Similarity=0.257 Sum_probs=21.4
Q ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHH
Q 012083 426 RKVDELLSNDVVRKNALKLKELAQKS 451 (471)
Q Consensus 426 ~~i~~ll~~~~~~~~a~~l~~~~~~~ 451 (471)
+.|.+++.+.++++.++++++++.++
T Consensus 5 eEi~k~i~eK~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 5 EEIPKAIMEKDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhC
Confidence 35667777889999999999998765
No 425
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=39.56 E-value=63 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.061 Sum_probs=23.8
Q ss_pred CCeeEEEECCC--cchHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVT--FGWALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~--~~~~~~~A~~lgiP~v~~~ 155 (471)
.++|+|++-.. .+.|..+|..+|+|++.+-
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vR 80 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAK 80 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 68999996543 2377889999999999963
No 426
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=39.48 E-value=2.6e+02 Score=27.03 Aligned_cols=35 Identities=17% Similarity=-0.054 Sum_probs=25.6
Q ss_pred CCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIADVTFG---WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
.++|+||.=.-.. .+-.+|..+++|+|.+.++..+
T Consensus 77 ~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~gt 114 (345)
T cd08171 77 QEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIASN 114 (345)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcccc
Confidence 7999999544322 5556777789999999876543
No 427
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.40 E-value=62 Score=27.94 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=23.6
Q ss_pred CCeeEEEECCC--cchHHHHHHHcCCceEEE
Q 012083 126 EKITCVIADVT--FGWALQVAAKLELKKASI 154 (471)
Q Consensus 126 ~~pD~vV~D~~--~~~~~~~A~~lgiP~v~~ 154 (471)
.++|.||+-.. ...|..+|.++|+|+|.+
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 67999996543 337888999999999995
No 428
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=39.39 E-value=2.8e+02 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcc--hHHHHHHHcCCceEEEeC
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFG--WALQVAAKLELKKASIYT 156 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~--~~~~~A~~lgiP~v~~~~ 156 (471)
.+.++++.+++ .+..+|+++.... .+-.+|+..|++.+.+.+
T Consensus 208 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKK----SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 34455555555 8999999998776 456799999999987654
No 429
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=39.06 E-value=3.8e+02 Score=26.93 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=28.2
Q ss_pred EEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEE-eCCcch
Q 012083 19 HVLLVSFP-AQGHVASLMKLAHRLADCRIKVTFV-TTEFIC 57 (471)
Q Consensus 19 ~Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~-~~~~~~ 57 (471)
+|++.... ..|=..-.+.|++.|.++|.+|.-+ +.+++.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i 43 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI 43 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC
Confidence 45555544 5588899999999999999998754 444443
No 430
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=38.86 E-value=2.9e+02 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=30.2
Q ss_pred EEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 20 VLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 20 Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
|.|.. -|+-|=..-.+.||..|+++|++|.++=....
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 44444 56889999999999999999999999866554
No 431
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=38.85 E-value=81 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.9
Q ss_pred ceeeeeccCc------chhhHhhhcCCceeeccc
Q 012083 363 VACYLTHCGW------NSTMEGISMGVPFLCWPW 390 (471)
Q Consensus 363 ~~~~ItHgG~------~s~~eal~~GvP~l~~P~ 390 (471)
..++++|+|. +.+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3348888774 478889999999999963
No 432
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.74 E-value=38 Score=31.50 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=34.2
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhC
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLS 433 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~ 433 (471)
++++|+=||-||++.+.+ .++|++.+-. - .+|-.. .++.+++.+.+.+++.
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~--------G------~lGFL~------~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINR--------G------NLGFLT------DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------CCcccc------cCCHHHHHHHHHHHHh
Confidence 345999999999998755 3688887721 1 133222 2456777777877776
No 433
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=38.55 E-value=42 Score=34.22 Aligned_cols=31 Identities=35% Similarity=0.391 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC--CCeEEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC--RIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r--Gh~Vt~~~~ 53 (471)
||||++..+++.| +|+++|++. |++|.++-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 5999999888888 578888876 999888754
No 434
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.53 E-value=51 Score=30.65 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred ceeeeeccCcchhhHhhh-cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS-MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+=||-||++.+.+ +..|++.+ |.-+ +|-. ..++.+++.+++++++++.
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGI--------N~G~------lGFL------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGI--------NMGG------LGFL------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEE--------ECCC------CccC------cccCHHHHHHHHHHHHcCC
Confidence 345999999999999988 45677666 2111 2222 2246688888999888764
No 435
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=38.28 E-value=2e+02 Score=26.45 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=34.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhh
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERI 60 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~ 60 (471)
.-+++...++.|=...+..++..++.. |+.|.|++.+...+.+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~ 74 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRT 74 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHH
Confidence 345677778999999999999998777 9999999987655444
No 436
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=38.25 E-value=95 Score=34.41 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=60.6
Q ss_pred eccchh---hhhccCcceeeee---ccCcchh-hHhhhcCC---ceeecccccchhhhHHHHHhhhc-ceeeecCCCCCC
Q 012083 350 KWAPQE---KVLAHPSVACYLT---HCGWNST-MEGISMGV---PFLCWPWGHDHLYIKSCICDDWK-IGLWLEPDDNGI 418 (471)
Q Consensus 350 ~~vpq~---~lL~~~~~~~~It---HgG~~s~-~eal~~Gv---P~l~~P~~~DQ~~na~~v~~~~G-~G~~~~~~~~~~ 418 (471)
..+|+. ++++-++| ++. .-|+|-+ .|+++++. -+++++-+. .-| .. +| -|+.+++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa---~~-L~~~AllVNP----- 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAA---QS-LGAGAILVNP----- 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chH---HH-hCCceEEECC-----
Confidence 345654 56666776 544 3487755 59999955 233333222 112 23 44 4677754
Q ss_pred cCHhHHHHHHHHHhC-cH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Q 012083 419 IGRHEIKRKVDELLS-ND-VVRKNALKLKELAQKSVTKEGSSSKNLEYFIKQIT 470 (471)
Q Consensus 419 ~~~~~l~~~i~~ll~-~~-~~~~~a~~l~~~~~~~~~~gg~~~~~~~~~~~~~~ 470 (471)
.+.++++++|.++|+ ++ +-+++.+++.+.++. -+...=.+.|++++.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~ 560 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVTT-----HTAQEWAETFVSELN 560 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-----CCHHHHHHHHHHHHH
Confidence 688999999999997 44 445555555555543 255555667776664
No 437
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=38.13 E-value=1.4e+02 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=21.6
Q ss_pred ceeeeeccCcc------hhhHhhhcCCceeeccc
Q 012083 363 VACYLTHCGWN------STMEGISMGVPFLCWPW 390 (471)
Q Consensus 363 ~~~~ItHgG~~------s~~eal~~GvP~l~~P~ 390 (471)
..++++|+|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 34477877744 67889999999999963
No 438
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=38.02 E-value=2.7e+02 Score=24.15 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=20.6
Q ss_pred EEEEEcCCCcccHHHHHHHHHHHHhC
Q 012083 19 HVLLVSFPAQGHVASLMKLAHRLADC 44 (471)
Q Consensus 19 ~Il~~~~~~~GH~~p~~~La~~L~~r 44 (471)
++++ -.|+.||..=|+.|.++|.++
T Consensus 40 ~~lV-vlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLV-VLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEE-EEcCCCcHHHHHHHHHHHHhh
Confidence 4544 458999999999999999776
No 439
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=37.85 E-value=2.8e+02 Score=24.40 Aligned_cols=144 Identities=10% Similarity=0.044 Sum_probs=70.4
Q ss_pred CCcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhC-CCcEEEeccchhhhhccCcc
Q 012083 285 PGSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVA-DFGKMVKWAPQEKVLAHPSV 363 (471)
Q Consensus 285 ~~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~-~nv~~~~~vpq~~lL~~~~~ 363 (471)
+++++.|..|.++ ...++.|.+.+..+.+..+ . ..+.+.+..+ .++.......+...+...++
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~--------~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl 73 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E--------LTENLVKLVEEGKIRWKQKEFEPSDIVDAFL 73 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C--------CCHHHHHHHhCCCEEEEecCCChhhcCCceE
Confidence 3568888877632 2344455556766554432 2 1222222222 23444444444555655554
Q ss_pred eeeeeccCcchhhHhhh----cCCceeecccccchhhhH-----HHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 364 ACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIK-----SCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 364 ~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na-----~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
+|.--+.-.+.+.++ .++++-+ .|.+..+ ..+.+. ++-+.+.+......-...|++.|++++..
T Consensus 74 --ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~~~ 146 (202)
T PRK06718 74 --VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALYDE 146 (202)
T ss_pred --EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHcch
Confidence 888777666665554 3444433 2433222 222332 34444433111222335677777776633
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 012083 435 --DVVRKNALKLKELAQKS 451 (471)
Q Consensus 435 --~~~~~~a~~l~~~~~~~ 451 (471)
..+-+.+.++.+.+++.
T Consensus 147 ~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 147 SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 25666666666666654
No 440
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.79 E-value=44 Score=31.24 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=27.9
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
+||.|+-.+..| .++|+.|.++||+|++..-..-
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~ 34 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPE 34 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChh
Confidence 488888888776 5789999999999999866543
No 441
>PRK08939 primosomal protein DnaI; Reviewed
Probab=37.73 E-value=64 Score=30.61 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=38.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
.-+++...++.|=..=+.++|.+|.++|+.|+|+..+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 468888888888888889999999999999999998877666653
No 442
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=37.63 E-value=1.1e+02 Score=25.44 Aligned_cols=92 Identities=12% Similarity=0.080 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCcchh---hhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccH
Q 012083 34 LMKLAHRLADCRIKVTFVTTEFICE---RIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPG 110 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (471)
+..+.+.|.++|+.+.++|...... .+...+.. .-+...-..+..... +. ...
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~----------~~f~~i~~~~~~~~~---Kp-----------~~~ 137 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD----------DYFDEIISSDDVGSR---KP-----------DPD 137 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG----------GGCSEEEEGGGSSSS---TT-----------SHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccccccccc----------cccccccccchhhhh---hh-----------HHH
Confidence 4567888888999999999876432 22222110 011111111111111 00 112
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEE
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASI 154 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~ 154 (471)
.++.+++++.- .+-+++++|... .....|...|++.|.+
T Consensus 138 ~~~~~~~~~~~----~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 138 AYRRALEKLGI----PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHHHHHTS----SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCC----CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 23344444432 345677777666 7889999999998864
No 443
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.62 E-value=44 Score=31.49 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=37.3
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+=||-||++.+.+ .++|++.+ |.-+ +|-.- .++.+++.+++++++++.
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGI--------N~G~------lGFL~------~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGI--------NQGH------LGFLT------QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEE--------ecCC------CeEee------ccCHHHHHHHHHHHHcCC
Confidence 455999999999999965 47898887 3211 23222 246688888888888764
No 444
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.19 E-value=46 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.1
Q ss_pred ceeeeeccCcchhhHhhh---cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCc
Q 012083 363 VACYLTHCGWNSTMEGIS---MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSN 434 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~ 434 (471)
++++|+-||-||++++++ .++|++.++... +|.- ..+..+++.+++.+++++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------lGFl--------~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT------------LGFL--------TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------CCcc--------ccCCHHHHHHHHHHHHcC
Confidence 455999999999999984 356888776321 1111 123456677777777755
No 445
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=37.05 E-value=29 Score=31.29 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=16.7
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012083 34 LMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 34 ~~~La~~L~~rGh~Vt~~~~ 53 (471)
-.++|++|+++|++|+++..
T Consensus 28 G~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHCCCEEEEEcC
Confidence 35889999999999998753
No 446
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=37.02 E-value=3.8e+02 Score=29.15 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=30.6
Q ss_pred CcEEEEEc--CCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 17 NVHVLLVS--FPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 17 ~~~Il~~~--~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
+.|++.++ -|+-|-..-...||..|++.|++|.++-.+..
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34555444 44678999999999999999999999855544
No 447
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=36.85 E-value=39 Score=31.52 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 36 KLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 36 ~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
-+|..|++.||+|++++.....+.+.+.
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~ 32 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQE 32 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHC
Confidence 4688899999999999986444555544
No 448
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=36.57 E-value=55 Score=31.11 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=44.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCcceeeeeccCcchhhH
Q 012083 298 KLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVACYLTHCGWNSTME 377 (471)
Q Consensus 298 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~~ItHgG~~s~~e 377 (471)
..+.+....+.+++.....+.||.+.+.- +-.++.+++....+-+||+. ||-..-..+.+-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-----------------g~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGD-----------------DSNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCccc-----------------CHhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 44666788899999999999999998761 11123444444445555554 555555555555
Q ss_pred hhh--cCCceeeccc
Q 012083 378 GIS--MGVPFLCWPW 390 (471)
Q Consensus 378 al~--~GvP~l~~P~ 390 (471)
+++ +|++.+--|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 552 2454444443
No 449
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=36.44 E-value=93 Score=29.59 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
.+.|++|+... +..++|..+|+|.|.++.
T Consensus 252 ~~a~l~I~nDS--Gp~HlA~A~g~p~valfG 280 (322)
T PRK10964 252 AGAKAVVSVDT--GLSHLTAALDRPNITLYG 280 (322)
T ss_pred HhCCEEEecCC--cHHHHHHHhCCCEEEEEC
Confidence 47899997654 578999999999999875
No 450
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=36.42 E-value=66 Score=28.21 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=29.7
Q ss_pred cEEEEEcCCCcccHHHHHH-HHHHHHh-CCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMK-LAHRLAD-CRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~-La~~L~~-rGh~Vt~~~~~ 54 (471)
|||+++-....||..-+.. +++.+.+ .|++|.++..+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 6899888888999999776 5666666 89999887654
No 451
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=36.40 E-value=3e+02 Score=26.59 Aligned_cols=44 Identities=20% Similarity=0.074 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchH
Q 012083 112 LEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAP 159 (471)
Q Consensus 112 ~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~ 159 (471)
++++++.+.+ .++|+||.=.-.. .+..+|...|+|+|.+.|+..
T Consensus 76 v~~~~~~~~~----~~~d~IIaiGGGsv~D~ak~vA~~rgip~I~IPTT~~ 122 (350)
T PRK00843 76 VEKVEEKAKD----VNAGFLIGVGGGKVIDVAKLAAYRLGIPFISVPTAAS 122 (350)
T ss_pred HHHHHHHhhc----cCCCEEEEeCCchHHHHHHHHHHhcCCCEEEeCCCcc
Confidence 4455555544 6789999543322 445567788999999987754
No 452
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.39 E-value=50 Score=31.29 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=37.8
Q ss_pred cceeeeeccCcchhhHhhhc----CCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 362 SVACYLTHCGWNSTMEGISM----GVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 362 ~~~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
.++++|+=||-||++.+.+. ++|++.+.. - .+|-.- .+..+++.+++.+++++.
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL~------~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFLA------EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCceec------cCCHHHHHHHHHHHHcCC
Confidence 34559999999999998764 889888842 1 123333 235678888888888764
No 453
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=36.24 E-value=2.6e+02 Score=23.49 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=13.5
Q ss_pred hCcHHHHHHHHHHHHHHHHHh
Q 012083 432 LSNDVVRKNALKLKELAQKSV 452 (471)
Q Consensus 432 l~~~~~~~~a~~l~~~~~~~~ 452 (471)
+.|++++++.+.+++..++.+
T Consensus 128 ~~d~~l~~kl~~~r~~~~~~v 148 (156)
T TIGR01162 128 IKDPELAEKLKEYRENQKEEV 148 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 446677777777766666543
No 454
>PRK06756 flavodoxin; Provisional
Probab=36.20 E-value=67 Score=26.46 Aligned_cols=36 Identities=6% Similarity=0.235 Sum_probs=28.9
Q ss_pred cEEEEEcCCCcccHHHHH-HHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVSFPAQGHVASLM-KLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~-~La~~L~~rGh~Vt~~~~ 53 (471)
|||+++=...+||..-+. .|++.|.++|++|.+.-.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 788888777899988865 568889889999987644
No 455
>PRK06835 DNA replication protein DnaC; Validated
Probab=36.17 E-value=59 Score=31.22 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=37.0
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
..++|+..++.|=..=+.++|++|.++|+.|.+++.+...+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 56888888888877778899999999999999999877766554
No 456
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.10 E-value=56 Score=33.08 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=36.5
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
.+||++...++.+=+ =...|.+.|.++||+|.++.++.....+...
T Consensus 70 ~k~IllgVtGsIAay-ka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIAAY-KALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHHHH-HHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 478888776655544 6889999999999999999998877766643
No 457
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=36.08 E-value=52 Score=29.57 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 30 HVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 30 H~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
|...|...|++|.++||+|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788999999999999999998873
No 458
>PTZ00445 p36-lilke protein; Provisional
Probab=36.02 E-value=2.7e+02 Score=24.86 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=24.5
Q ss_pred ccHHH-HHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 29 GHVAS-LMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 29 GH~~p-~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
+|+.| +..++++|.+.|..|+++|..+...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 34555 7789999999999999999887644
No 459
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=35.98 E-value=68 Score=25.91 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=25.0
Q ss_pred cEEEEEc-CCCcc--cHHHHHHHHHHHHhCCCeE-EEEeCCcch
Q 012083 18 VHVLLVS-FPAQG--HVASLMKLAHRLADCRIKV-TFVTTEFIC 57 (471)
Q Consensus 18 ~~Il~~~-~~~~G--H~~p~~~La~~L~~rGh~V-t~~~~~~~~ 57 (471)
||++|+- .+-+| ...-.+.+|+++.+.||+| +++-..+-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV 44 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGV 44 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHH
Confidence 3664433 33334 4455778899999999984 665554443
No 460
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=35.98 E-value=66 Score=27.04 Aligned_cols=40 Identities=28% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhH
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIK 61 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~ 61 (471)
+..+|+++..|.-| ...++.|.+.||+|+++.+ ...+.+.
T Consensus 12 ~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp-~~~~~l~ 51 (157)
T PRK06719 12 HNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSP-EICKEMK 51 (157)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcC-ccCHHHH
Confidence 45788888766443 6789999999999999954 4433343
No 461
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=35.80 E-value=4.1e+02 Score=25.58 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
+...|.+...++.|=..-+-.|+..|.++|++|.+++.+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3467899999999999999999999999999999998876543
No 462
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.72 E-value=62 Score=30.45 Aligned_cols=53 Identities=4% Similarity=0.034 Sum_probs=36.7
Q ss_pred ceeeeeccCcchhhHhhh----cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 363 VACYLTHCGWNSTMEGIS----MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 363 ~~~~ItHgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
++++|+=||-||++.+.+ +++|++.+-. - . +|.-. .++.+++.+++++++++.
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G---~-lGFl~--------~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINR--------G---N-LGFLT--------DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C---C-CCccc--------ccCHHHHHHHHHHHHcCC
Confidence 455999999999999975 3678877732 1 1 23322 235688888998888763
No 463
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.66 E-value=54 Score=36.44 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=22.7
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
.+||++|.... ...+|+++|||++-...
T Consensus 388 ~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 388 KMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred cCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 89999998643 45688999999997653
No 464
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=35.59 E-value=57 Score=27.57 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc--hhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI--CERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~--~~~~~~~ 63 (471)
..+|.++-++++||. -|.-|++.|++|++...+.. .+..++.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~ 47 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKAD 47 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHT
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHC
Confidence 479999999999985 47789999999999877654 3344444
No 465
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=35.49 E-value=2.9e+02 Score=28.60 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeCc
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYTS 157 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~~ 157 (471)
.+..+..+.++++ .++++||+|.. +..+|+++|++.|.+.+.
T Consensus 131 ~~e~~~~~~~l~~----~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRA----RGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHH----CCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3456677777777 89999999963 568999999999998774
No 466
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=35.02 E-value=77 Score=29.85 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCcc-c---HHHHHHHHHHHHhCCCeEEEEeC
Q 012083 16 TNVHVLLVSFPAQG-H---VASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 16 ~~~~Il~~~~~~~G-H---~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
+++||+++..|..+ | +.-..+++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 46899998876554 2 34466889999999999988743
No 467
>PRK13604 luxD acyl transferase; Provisional
Probab=34.91 E-value=80 Score=29.91 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFV 51 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~ 51 (471)
+.+.+++.++..++-..+..+|+.|.++|+.|.-+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 45677788888888777999999999999988764
No 468
>PLN02285 methionyl-tRNA formyltransferase
Probab=34.89 E-value=2.8e+02 Score=26.67 Aligned_cols=33 Identities=12% Similarity=-0.057 Sum_probs=19.1
Q ss_pred CCeeEEEECCCcc-hHHHHHHHcCCceEEEeCch
Q 012083 126 EKITCVIADVTFG-WALQVAAKLELKKASIYTSA 158 (471)
Q Consensus 126 ~~pD~vV~D~~~~-~~~~~A~~lgiP~v~~~~~~ 158 (471)
.+||++|+-.+.. -...+-.....-++-++++.
T Consensus 92 ~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpSL 125 (334)
T PLN02285 92 LQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSL 125 (334)
T ss_pred hCCCEEEhhHhhhhcCHHHHhhccCCEEEEeccc
Confidence 8999999765432 23334444444566666543
No 469
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.81 E-value=1.1e+02 Score=23.18 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
..||++++..+.|--.-...+=+.+.++|.++.+-..+
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 47999999887774455566667777889988776554
No 470
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=34.76 E-value=3.5e+02 Score=25.44 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcccCCCCeeEEEECCCcchHHHHHHHcCCceEEEeC
Q 012083 111 YLEELIQKINQQEEDEKITCVIADVTFGWALQVAAKLELKKASIYT 156 (471)
Q Consensus 111 ~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~~~A~~lgiP~v~~~~ 156 (471)
.++++++..+...-..+.-+||+|.-. +...|+.+|||++.+..
T Consensus 106 nl~al~~~~~~~~l~~~i~~visn~~~--~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 106 CLNDLLYRWRMGELDMDIVGIISNHPD--LQPLAVQHDIPFHHLPV 149 (289)
T ss_pred cHHHHHHHHHCCCCCcEEEEEEECChh--HHHHHHHcCCCEEEeCC
Confidence 467888776653211355667777543 35889999999998653
No 471
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=34.71 E-value=1.9e+02 Score=26.29 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhCC-CeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCC-CCCCCCCcccHHHHHHHHHhhc
Q 012083 31 VASLMKLAHRLADCR-IKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPD-GLEPEDDRKDEAKMTRSISKVM 108 (471)
Q Consensus 31 ~~p~~~La~~L~~rG-h~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 108 (471)
+.|..++.++|+..| .+|.++++ |.+.+.+..... -...|++...+.. +..... .+.+..
T Consensus 105 tt~~~A~~~AL~alg~~RIalvTP--Y~~~v~~~~~~~------l~~~G~eV~~~~~~~~~~~~----------~ia~i~ 166 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLTP--YTPETSRPMAQY------FAVRGFEIVNFTCLGLTDDR----------EMARIS 166 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEECC--CcHHHHHHHHHH------HHhCCcEEeeeeccCCCCCc----------eeeecC
Confidence 456778888888888 55666665 333222221110 0112666655422 111110 011223
Q ss_pred cHHHHHHHHHHhcccCCCCeeEEEECCCcchHH----HHHHHcCCceEE
Q 012083 109 PGYLEELIQKINQQEEDEKITCVIADVTFGWAL----QVAAKLELKKAS 153 (471)
Q Consensus 109 ~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~~~----~~A~~lgiP~v~ 153 (471)
.+.+.+.+.++.. .++|.|+..-....+. .+=+.+|+|++.
T Consensus 167 p~~i~~~~~~~~~----~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 167 PDCIVEAALAAFD----PDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred HHHHHHHHHHhcC----CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 3334455555433 6888888664333333 344678999976
No 472
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=34.64 E-value=41 Score=33.93 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=26.5
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFI 56 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~ 56 (471)
|||+++..|.-| ++-|.+|+++||+||++-....
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 477777766544 7789999999999999866544
No 473
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.64 E-value=85 Score=26.71 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEE
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFV 51 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~ 51 (471)
+..+|++++.++ -.--=-+.+|+.|.++|++|+++
T Consensus 24 ~~~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 24 KGPRVLILCGPG-NNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp TT-EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEE
Confidence 457898888664 23334678899999999999984
No 474
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.62 E-value=1.4e+02 Score=26.58 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhC-CCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADC-RIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~ 63 (471)
..-+++...++.|=..-.+.++.+-+++ |..|.+++.....+.+.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHH
Confidence 4568888899999999999988877777 9999999998776665554
No 475
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=34.51 E-value=49 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.2
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|||+|+-.|..| ..+|..|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 799999877666 45788899999999988764
No 476
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.45 E-value=72 Score=29.33 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCc
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEF 55 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~ 55 (471)
..|.|+.=|+-|=..-+..||..|+++|++|.++=.+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 45777777788999999999999999999999984443
No 477
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.44 E-value=65 Score=29.68 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=36.2
Q ss_pred cceeeeeccCcchhhHhhh-cCCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 362 SVACYLTHCGWNSTMEGIS-MGVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 362 ~~~~~ItHgG~~s~~eal~-~GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
+++++|+=||-||++.+++ +++|++.+- .- .+|-.. .++.+++.+++.+++++.
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin--------~G------~lGfl~------~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFK--------AG------RLGFLS------SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEe--------CC------CCcccc------ccCHHHHHHHHHHHHcCC
Confidence 3455999999999999977 578877762 11 122222 245677888888877653
No 478
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=34.33 E-value=2.4e+02 Score=29.10 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=21.7
Q ss_pred CCeeEEEECCCcchHHHHHHHcCCceEEE
Q 012083 126 EKITCVIADVTFGWALQVAAKLELKKASI 154 (471)
Q Consensus 126 ~~pD~vV~D~~~~~~~~~A~~lgiP~v~~ 154 (471)
.+||++|.... ...+|.++|||++-.
T Consensus 397 ~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 397 LKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred cCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 79999998865 346899999999874
No 479
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=34.28 E-value=3.2e+02 Score=24.74 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=20.0
Q ss_pred CCeeEEEECCCcc----hHHHHHHHcCCceEEEe
Q 012083 126 EKITCVIADVTFG----WALQVAAKLELKKASIY 155 (471)
Q Consensus 126 ~~pD~vV~D~~~~----~~~~~A~~lgiP~v~~~ 155 (471)
.++|.||...... .....+...|||+|.+.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 56 KGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred hCCCEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 5889887765422 22345567899999864
No 480
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=34.25 E-value=26 Score=30.90 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=26.2
Q ss_pred CCeeEEEE-CCCcc-hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIA-DVTFG-WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+ |...- -|..=|.++|||.|.+..+...
T Consensus 113 ~~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~d 149 (204)
T PRK04020 113 IEPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNL 149 (204)
T ss_pred CCCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCC
Confidence 57888775 44333 7788999999999999866543
No 481
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=34.16 E-value=26 Score=30.66 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCeeEEEE-CCCcc-hHHHHHHHcCCceEEEeCchHH
Q 012083 126 EKITCVIA-DVTFG-WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 126 ~~pD~vV~-D~~~~-~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
..||+||+ |...- -|..-|.++|||.|.+..+...
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~d 143 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNP 143 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCC
Confidence 57887765 54433 7888999999999999776543
No 482
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=34.12 E-value=55 Score=30.03 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.7
Q ss_pred cEEEEEcCC---CcccHHHHHHHHHHHHhCCCeEEEEeCCcchh
Q 012083 18 VHVLLVSFP---AQGHVASLMKLAHRLADCRIKVTFVTTEFICE 58 (471)
Q Consensus 18 ~~Il~~~~~---~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~ 58 (471)
+|.+|++.+ +-|-=.-...|++-|..||++|+..=.+++..
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlN 44 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLN 44 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccc
Confidence 478888876 55667778899999999999999997776654
No 483
>PLN02929 NADH kinase
Probab=33.88 E-value=49 Score=31.17 Aligned_cols=66 Identities=11% Similarity=0.078 Sum_probs=42.4
Q ss_pred cceeeeeccCcchhhHhhh---cCCceeeccccc------chhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHh
Q 012083 362 SVACYLTHCGWNSTMEGIS---MGVPFLCWPWGH------DHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELL 432 (471)
Q Consensus 362 ~~~~~ItHgG~~s~~eal~---~GvP~l~~P~~~------DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll 432 (471)
.++++|+-||-||++.+.+ .++|++.+=... .+..|... +. .-+|-.-. ++.+++.+++.+++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHHHHH
Confidence 3455999999999999855 478988874421 12223221 11 12454443 46789999999999
Q ss_pred CcH
Q 012083 433 SND 435 (471)
Q Consensus 433 ~~~ 435 (471)
++.
T Consensus 136 ~g~ 138 (301)
T PLN02929 136 FGR 138 (301)
T ss_pred cCC
Confidence 764
No 484
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=33.86 E-value=3.2e+02 Score=25.13 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=37.4
Q ss_pred cEEEEEcC-CCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhh
Q 012083 18 VHVLLVSF-PAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESR 64 (471)
Q Consensus 18 ~~Il~~~~-~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~ 64 (471)
.|-.|+.. |+-|-..-...||-.|+.-+|.|.++++++.+..-.+.+
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~ 66 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFS 66 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHH
Confidence 56666654 467999999999999999999999999988766544443
No 485
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=33.84 E-value=1e+02 Score=24.37 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=38.9
Q ss_pred cccccccccccCC------CCcEEEEEcCC-CcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhh
Q 012083 3 FRYFASESESLNK------TNVHVLLVSFP-AQGHVASLMKLAHRLADCRIKVTFVTTEFICERI 60 (471)
Q Consensus 3 ~~~~~~~~~~m~~------~~~~Il~~~~~-~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~ 60 (471)
|++.+++++.|-- .+.+|++++.. ......-...+++.|++.|..|.+-........+
T Consensus 6 ~~~~~~~~~~~~~~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~~sl~kql 70 (121)
T cd00858 6 FRVREGDEGRIVLRLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDSGSIGRRY 70 (121)
T ss_pred eecccCCCccEEEEcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHH
Confidence 5778888888642 24567777754 1345566789999999999999885433333333
No 486
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=33.80 E-value=80 Score=28.78 Aligned_cols=91 Identities=19% Similarity=0.216 Sum_probs=56.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccH
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDE 97 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 97 (471)
|+|+++...+- ...|++.|...++.+++.+...+-....... . ..++-.
T Consensus 3 ~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~-----------~-~~~~~G-------------- 51 (257)
T COG2099 3 MRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQI-----------G-PVRVGG-------------- 51 (257)
T ss_pred ceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhcc-----------C-CeeecC--------------
Confidence 67777654333 4689999999998887777665544333210 0 111100
Q ss_pred HHHHHHHHhhccHHHHHHHHHHhcccCCCCeeEEEECCCcch-------HHHHHHHcCCceEEEe
Q 012083 98 AKMTRSISKVMPGYLEELIQKINQQEEDEKITCVIADVTFGW-------ALQVAAKLELKKASIY 155 (471)
Q Consensus 98 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~pD~vV~D~~~~~-------~~~~A~~lgiP~v~~~ 155 (471)
....+.+.+++++ .+.|+|| |..-++ +..+|+..|||++.+-
T Consensus 52 --------~l~~e~l~~~l~e-------~~i~llI-DATHPyAa~iS~Na~~aake~gipy~r~e 100 (257)
T COG2099 52 --------FLGAEGLAAFLRE-------EGIDLLI-DATHPYAARISQNAARAAKETGIPYLRLE 100 (257)
T ss_pred --------cCCHHHHHHHHHH-------cCCCEEE-ECCChHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 0123346677777 8999988 554343 3478999999999964
No 487
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=33.77 E-value=4.4e+02 Score=27.64 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=71.7
Q ss_pred CcEEEEecCccccCCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCCchhHHhhCCCcEEEeccchhhhhccCccee
Q 012083 286 GSVIYAAFGSISKLSQQQFNELALGLELAGQPFLCGVRPGFINGSSTNNPDGLVAKVADFGKMVKWAPQEKVLAHPSVAC 365 (471)
Q Consensus 286 ~~vv~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~lp~~~~~~~~~nv~~~~~vpq~~lL~~~~~~~ 365 (471)
.+.|-|-+|| ..+......+...|+..+..+-+.+.+- ...|+.+.+. +-+..- ..+++
T Consensus 410 ~~~v~i~~gs--~sd~~~~~~~~~~l~~~g~~~~~~v~sa------hr~~~~~~~~----------~~~~~~---~~~~v 468 (577)
T PLN02948 410 TPLVGIIMGS--DSDLPTMKDAAEILDSFGVPYEVTIVSA------HRTPERMFSY----------ARSAHS---RGLQV 468 (577)
T ss_pred CCeEEEEECc--hhhHHHHHHHHHHHHHcCCCeEEEEECC------ccCHHHHHHH----------HHHHHH---CCCCE
Confidence 4567777777 4456667888899999998876655443 3345543321 111110 11223
Q ss_pred eeeccCcchhhHh---hhcCCceeecccccc---hhhhHHHHHhhh--ccee-eecCCCCCCcCHhHHHHHHHHHhCcHH
Q 012083 366 YLTHCGWNSTMEG---ISMGVPFLCWPWGHD---HLYIKSCICDDW--KIGL-WLEPDDNGIIGRHEIKRKVDELLSNDV 436 (471)
Q Consensus 366 ~ItHgG~~s~~ea---l~~GvP~l~~P~~~D---Q~~na~~v~~~~--G~G~-~~~~~~~~~~~~~~l~~~i~~ll~~~~ 436 (471)
+|.=.|.-.-+-. -..-+|++.+|.... -.+--.-+.+ - |+.+ ++.. .+..+..-++..| --+.|++
T Consensus 469 ~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i--~~~~~aa~~a~~i-~~~~~~~ 544 (577)
T PLN02948 469 IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI--GNATNAGLLAVRM-LGASDPD 544 (577)
T ss_pred EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec--CChHHHHHHHHHH-HhcCCHH
Confidence 5555553322222 122467777777421 1111111222 2 3211 1111 1333444444333 3345677
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 012083 437 VRKNALKLKELAQKSVTKE 455 (471)
Q Consensus 437 ~~~~a~~l~~~~~~~~~~g 455 (471)
++++.+..++.+++.+.+.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~ 563 (577)
T PLN02948 545 LLDKMEAYQEDMRDMVLEK 563 (577)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888888777765443
No 488
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.73 E-value=66 Score=29.78 Aligned_cols=53 Identities=4% Similarity=0.154 Sum_probs=34.8
Q ss_pred eeeeeccCcchhhHhhhc-----CCceeecccccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHHhCcH
Q 012083 364 ACYLTHCGWNSTMEGISM-----GVPFLCWPWGHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDELLSND 435 (471)
Q Consensus 364 ~~~ItHgG~~s~~eal~~-----GvP~l~~P~~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~ll~~~ 435 (471)
+++|+=||-||++.+++. .+|++.+-.. - .+|-. ..++.+++.+++.++++++
T Consensus 41 D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~-------G------~lGFL------~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 41 NIIVSIGGDGTFLQAVRKTGFREDCLYAGISTK-------D------QLGFY------CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred cEEEEECCcHHHHHHHHHhcccCCCeEEeEecC-------C------CCeEc------ccCCHHHHHHHHHHHHcCC
Confidence 449999999999999874 5676665320 0 12221 2246678888888888664
No 489
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.72 E-value=3.4e+02 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHh----CCCeEEEEeCCcchhhhH
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLAD----CRIKVTFVTTEFICERIK 61 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~----rGh~Vt~~~~~~~~~~~~ 61 (471)
+..|+|+...+.|=..-+..||..|.. +|+.|.+++...++....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~ 222 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK 222 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH
Confidence 456788888899999999999998873 589999999998765443
No 490
>PLN02240 UDP-glucose 4-epimerase
Probab=33.68 E-value=67 Score=30.85 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 16 TNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 16 ~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
+.++|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 44576654 555655 34568999999999998864
No 491
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.52 E-value=1.5e+02 Score=24.97 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=57.7
Q ss_pred hhhccCcceeeeeccC---cchhhHhhhcCCceeeccc-ccchhhhHHHHHhhhcceeeecCCCCCCcCHhHHHHHHHHH
Q 012083 356 KVLAHPSVACYLTHCG---WNSTMEGISMGVPFLCWPW-GHDHLYIKSCICDDWKIGLWLEPDDNGIIGRHEIKRKVDEL 431 (471)
Q Consensus 356 ~lL~~~~~~~~ItHgG---~~s~~eal~~GvP~l~~P~-~~DQ~~na~~v~~~~G~G~~~~~~~~~~~~~~~l~~~i~~l 431 (471)
.|-+||++.+-+--.| .-|+.|--.+|.=.+.=-- .-=+..|+++.++ +|.=-.+.. +..+.++|.++.++=
T Consensus 68 liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aV---kg~~k~~Il~a~~~R 143 (176)
T COG3195 68 LIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAV---KGNTKDTILAAFERR 143 (176)
T ss_pred HHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEee---cCCCHHHHHHHHHHH
Confidence 3556777732222222 3466777777765532110 1125789999999 898877776 667899999999999
Q ss_pred hCcH---HHHHHHHHHHHHH
Q 012083 432 LSND---VVRKNALKLKELA 448 (471)
Q Consensus 432 l~~~---~~~~~a~~l~~~~ 448 (471)
|.|+ +++..+.++.+..
T Consensus 144 l~n~~e~E~~tAl~eI~rIA 163 (176)
T COG3195 144 LDNDREQEFATALAEIERIA 163 (176)
T ss_pred hcccHHHHHHHHHHHHHHHH
Confidence 9886 5666666655543
No 492
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=33.40 E-value=84 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=24.7
Q ss_pred cEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCC
Q 012083 18 VHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTE 54 (471)
Q Consensus 18 ~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~ 54 (471)
|||.|+-.+..| .++|+.|.++||+|++....
T Consensus 1 m~Ig~IGlG~MG-----~~ma~~L~~~G~~v~v~~~~ 32 (292)
T PRK15059 1 MKLGFIGLGIMG-----TPMAINLARAGHQLHVTTIG 32 (292)
T ss_pred CeEEEEccCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 478888666555 67899999999999877543
No 493
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=33.28 E-value=3.7e+02 Score=25.91 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHhcccCCCCeeEEEECCCcc---hHHHHHHHcCCceEEEeCchHH
Q 012083 112 LEELIQKINQQEEDEKITCVIADVTFG---WALQVAAKLELKKASIYTSAPG 160 (471)
Q Consensus 112 ~~~ll~~l~~~~~~~~pD~vV~D~~~~---~~~~~A~~lgiP~v~~~~~~~~ 160 (471)
+++.++.+++ .++|+||.=.-.. .+-.+|..+++|++.+.|+..+
T Consensus 65 v~~~~~~~~~----~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~gt 112 (347)
T cd08172 65 IERLAAQAKE----NGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLAAT 112 (347)
T ss_pred HHHHHHHHHh----cCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCcccc
Confidence 3444444444 7899999544322 4556777779999998877543
No 494
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=32.99 E-value=2.7e+02 Score=22.75 Aligned_cols=40 Identities=13% Similarity=0.039 Sum_probs=31.0
Q ss_pred EcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHH
Q 012083 23 VSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKE 62 (471)
Q Consensus 23 ~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~ 62 (471)
+..+..--+.|..-++...+..|++|++..+---...+.+
T Consensus 9 l~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 9 LASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 3346777888999999999999999999888555544543
No 495
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=32.73 E-value=1.1e+02 Score=26.53 Aligned_cols=77 Identities=10% Similarity=0.054 Sum_probs=43.9
Q ss_pred hCCCeEEEEeCCcchhhhHHhhhcCCCCccCCCCCCeEEEeCCCCCCCCCCcccHHHHHHHHHhhccHHHHHHHHHHhcc
Q 012083 43 DCRIKVTFVTTEFICERIKESRQLGSFSEMGDAQQLVRIVPLPDGLEPEDDRKDEAKMTRSISKVMPGYLEELIQKINQQ 122 (471)
Q Consensus 43 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 122 (471)
..|.++++++.+.-+..+.+.- |+++...+..++..-...++....+...........++++.+.+.
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~~-------------G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~ 73 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAEM-------------GLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDG 73 (209)
T ss_pred hcCcEEEEecCCchHHHHHHHc-------------CCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4688999998877666555431 778887777766652222222223333333455566777777643
Q ss_pred cCCCCeeEEEE
Q 012083 123 EEDEKITCVIA 133 (471)
Q Consensus 123 ~~~~~pD~vV~ 133 (471)
.+ ..||++++
T Consensus 74 Ed-~~~~~vi~ 83 (209)
T KOG1509|consen 74 ED-SFPDVVIS 83 (209)
T ss_pred cc-CCcccccc
Confidence 32 33665553
No 496
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=32.72 E-value=2.8e+02 Score=24.09 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 32 ASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 32 ~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
.-++.+|+.|.+.|+++. ++......+.+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L~e~ 40 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFLKEA 40 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHHHHc
Confidence 447899999999999984 555677777777
No 497
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=32.69 E-value=53 Score=29.32 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=23.2
Q ss_pred cEEEEEc-CCCcccHHHHHHHHHHHHhCCCeEEEEeC
Q 012083 18 VHVLLVS-FPAQGHVASLMKLAHRLADCRIKVTFVTT 53 (471)
Q Consensus 18 ~~Il~~~-~~~~GH~~p~~~La~~L~~rGh~Vt~~~~ 53 (471)
|||.|+- .+..| ..+|+.|.++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 4888874 44433 4788999999999998755
No 498
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=32.59 E-value=1e+02 Score=29.63 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=36.4
Q ss_pred ccCCCCcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcch
Q 012083 12 SLNKTNVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFIC 57 (471)
Q Consensus 12 ~m~~~~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~ 57 (471)
.+..+...|++..-++.|-..-...||..|+++|++|.++-.....
T Consensus 26 ~~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 26 PPTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 3444456667788888899999999999999999999999665444
No 499
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=32.59 E-value=42 Score=29.80 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccCCCCeeEEEECCCcch-------HHHHHHHcCCceEEEe
Q 012083 112 LEELIQKINQQEEDEKITCVIADVTFGW-------ALQVAAKLELKKASIY 155 (471)
Q Consensus 112 ~~~ll~~l~~~~~~~~pD~vV~D~~~~~-------~~~~A~~lgiP~v~~~ 155 (471)
+.+.++++. ..||+|++|..... |..+...+++|+|.+.
T Consensus 83 l~~~~~~l~-----~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 83 LLEALEKLK-----TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred HHHHHHhCC-----CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 445555543 47999999987653 3345556778999864
No 500
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=32.44 E-value=1.2e+02 Score=27.72 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=41.9
Q ss_pred CcEEEEEcCCCcccHHHHHHHHHHHHhCCCeEEEEeCCcchhhhHHh
Q 012083 17 NVHVLLVSFPAQGHVASLMKLAHRLADCRIKVTFVTTEFICERIKES 63 (471)
Q Consensus 17 ~~~Il~~~~~~~GH~~p~~~La~~L~~rGh~Vt~~~~~~~~~~~~~~ 63 (471)
+.-+++...|+.|.....++.+...+++|..|.+++.....+.+.+.
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 45678889999999999999999999999999999999887777665
Done!