Query 012084
Match_columns 471
No_of_seqs 359 out of 2711
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 2.6E-61 8.8E-66 497.6 43.8 349 99-454 3-365 (388)
2 1k32_A Tricorn protease; prote 100.0 3.8E-48 1.3E-52 444.5 29.4 334 99-458 658-1014(1045)
3 3k50_A Putative S41 protease; 100.0 1.7E-46 5.7E-51 386.5 29.8 294 151-455 49-374 (403)
4 3dor_A Protein CT_858, CPAF; m 100.0 9E-34 3.1E-38 297.2 33.9 343 100-459 6-544 (583)
5 1j7x_A IRBP, interphotorecepto 100.0 9.3E-32 3.2E-36 267.9 21.0 178 286-463 105-296 (302)
6 2kom_A Partitioning defective 99.3 3.7E-12 1.3E-16 109.2 7.5 101 156-256 14-120 (121)
7 2koj_A Partitioning defective 99.3 9.2E-12 3.1E-16 104.7 7.9 96 162-257 1-102 (111)
8 2r4h_A Membrane-associated gua 99.2 9.7E-12 3.3E-16 105.0 7.2 98 156-256 10-109 (112)
9 2byg_A Channel associated prot 99.2 8E-12 2.7E-16 106.4 6.3 97 158-256 12-114 (117)
10 2edz_A PDZ domain-containing p 99.2 1.6E-12 5.4E-17 110.1 0.5 93 151-256 5-97 (114)
11 2v90_A PDZ domain-containing p 99.2 8E-11 2.7E-15 96.3 10.0 79 179-258 13-91 (96)
12 2jxo_A Ezrin-radixin-moesin-bi 99.1 4.1E-11 1.4E-15 98.4 5.7 91 160-256 3-93 (98)
13 1qau_A Neuronal nitric oxide s 99.1 2.3E-10 7.8E-15 96.3 9.9 81 176-259 9-90 (112)
14 3l4f_D SH3 and multiple ankyri 99.1 8.6E-11 3E-15 102.2 7.4 99 157-256 16-124 (132)
15 2he4_A Na(+)/H(+) exchange reg 99.1 3.1E-10 1.1E-14 91.6 10.0 74 179-256 14-87 (90)
16 2iwq_A Multiple PDZ domain pro 99.1 8.3E-11 2.8E-15 101.0 6.9 98 157-256 14-119 (123)
17 2dm8_A INAD-like protein; PDZ 99.1 3.5E-11 1.2E-15 101.9 4.2 96 160-257 7-104 (116)
18 2pkt_A PDZ and LIM domain prot 99.1 3E-10 1E-14 91.8 9.0 75 180-257 13-87 (91)
19 1wg6_A Hypothetical protein (r 99.1 7.1E-11 2.4E-15 102.0 5.3 98 159-256 10-122 (127)
20 1v6b_A Harmonin isoform A1; st 99.1 5.9E-11 2E-15 101.1 4.6 96 159-256 3-107 (118)
21 1g9o_A NHE-RF; PDZ domain, com 99.1 4.5E-10 1.5E-14 90.7 9.2 74 180-256 14-87 (91)
22 1r6j_A Syntenin 1; PDZ, membra 99.1 1.7E-10 5.8E-15 91.7 6.3 67 178-254 14-80 (82)
23 2uzc_A Human pdlim5, PDZ and L 99.1 5.8E-10 2E-14 89.5 9.4 74 180-256 13-86 (88)
24 4amh_A Disks large homolog 1; 99.1 1.2E-09 4E-14 91.2 11.2 87 179-266 12-103 (106)
25 1n7e_A AMPA receptor interacti 99.0 5.3E-10 1.8E-14 91.5 8.8 75 180-257 16-91 (97)
26 2pa1_A PDZ and LIM domain prot 99.0 6E-10 2E-14 89.3 8.8 74 180-256 12-85 (87)
27 2vz5_A TAX1-binding protein 3; 99.0 7.4E-10 2.5E-14 97.1 9.9 79 179-257 37-125 (139)
28 3b76_A E3 ubiquitin-protein li 99.0 2.8E-10 9.5E-15 97.0 6.9 96 159-255 13-112 (118)
29 3cbz_A Dishevelled-2; PDZ doma 99.0 4.3E-10 1.5E-14 94.2 7.8 78 180-257 17-97 (108)
30 1wfv_A Membrane associated gua 99.0 7.5E-11 2.6E-15 97.6 3.1 92 163-257 2-97 (103)
31 2vsp_A PDZ domain-containing p 99.0 1.3E-10 4.6E-15 94.0 4.4 72 181-256 15-86 (91)
32 2dls_A PDZ-rhogef, RHO guanine 99.0 1.2E-09 4E-14 88.9 9.7 72 179-258 18-89 (93)
33 2q3g_A PDZ and LIM domain prot 99.0 7.8E-10 2.7E-14 89.0 8.4 74 180-256 13-86 (89)
34 2w4f_A Protein LAP4; structura 99.0 1E-09 3.4E-14 89.7 9.1 80 177-257 11-94 (97)
35 1wi4_A Synip, syntaxin binding 99.0 3.7E-10 1.3E-14 94.8 6.5 77 180-256 25-105 (109)
36 2fcf_A Multiple PDZ domain pro 99.0 9.6E-10 3.3E-14 90.9 8.9 88 160-256 4-99 (103)
37 2djt_A Unnamed protein product 99.0 4.6E-10 1.6E-14 93.1 6.9 79 178-257 20-99 (104)
38 1kwa_A Hcask/LIN-2 protein; PD 99.0 7.2E-10 2.5E-14 89.3 7.8 73 179-256 12-85 (88)
39 2iwo_A Multiple PDZ domain pro 99.0 4.7E-10 1.6E-14 95.8 7.1 81 177-258 33-115 (120)
40 2db5_A INAD-like protein; PDZ 99.0 7.6E-10 2.6E-14 95.4 8.4 77 179-256 36-115 (128)
41 1ihj_A INAD; intermolecular di 99.0 1.2E-09 4.1E-14 89.5 9.2 77 179-256 16-97 (98)
42 3khf_A Microtubule-associated 99.0 1.4E-09 4.6E-14 89.4 9.5 77 180-257 13-94 (99)
43 1x5q_A LAP4 protein; PDZ domai 99.0 1.1E-09 3.9E-14 91.7 9.1 80 177-257 23-106 (110)
44 3sfj_A TAX1-binding protein 3; 99.0 1.7E-09 5.6E-14 89.6 9.8 77 178-254 17-103 (104)
45 2i04_A Membrane-associated gua 99.0 1.4E-09 4.7E-14 86.7 8.9 74 179-254 10-85 (85)
46 2jil_A GRIP1 protein, glutamat 99.0 1.3E-09 4.6E-14 89.0 9.1 78 179-257 13-93 (97)
47 3suz_A Amyloid beta A4 precurs 99.0 1.2E-10 4.2E-15 119.3 3.0 143 98-256 148-294 (388)
48 2eaq_A LIM domain only protein 99.0 6.4E-10 2.2E-14 89.6 6.3 72 180-256 17-89 (90)
49 3bpu_A Membrane-associated gua 99.0 1.3E-09 4.5E-14 87.4 7.9 73 179-256 13-86 (88)
50 2vwr_A Ligand of NUMB protein 99.0 1.6E-09 5.6E-14 88.2 8.4 75 179-257 15-90 (95)
51 1b8q_A Protein (neuronal nitri 98.9 4E-10 1.4E-14 97.1 4.5 79 176-257 16-95 (127)
52 2opg_A Multiple PDZ domain pro 98.9 3.1E-09 1.1E-13 86.9 9.7 77 179-257 14-91 (98)
53 1m5z_A GRIP, AMPA receptor int 98.9 2.5E-09 8.6E-14 86.3 9.0 72 180-255 19-90 (91)
54 2eeh_A PDZ domain-containing p 98.9 1.9E-09 6.6E-14 88.7 8.5 74 180-257 22-95 (100)
55 2dmz_A INAD-like protein; PDZ 98.9 8.7E-10 3E-14 95.2 6.6 79 178-257 25-107 (129)
56 1q3o_A Shank1; PDZ, GKAP, pept 98.9 1E-09 3.4E-14 91.9 6.7 77 178-255 17-103 (109)
57 2d90_A PDZ domain containing p 98.9 9.6E-10 3.3E-14 90.8 6.4 75 179-257 16-90 (102)
58 1wh1_A KIAA1095 protein; PDZ d 98.9 1E-09 3.4E-14 94.2 6.6 79 177-257 29-108 (124)
59 3r0h_A INAD, inactivation-NO-a 98.9 2.8E-09 9.6E-14 99.1 10.2 107 158-264 6-116 (206)
60 3kzd_A TIAM-1, T-lymphoma inva 98.9 3E-09 1E-13 86.6 9.0 71 180-254 20-90 (94)
61 2qg1_A Multiple PDZ domain pro 98.9 1.7E-09 5.9E-14 87.4 7.5 74 179-256 15-89 (92)
62 3o46_A Maguk P55 subfamily mem 98.9 2.5E-09 8.5E-14 86.8 8.3 73 180-256 15-88 (93)
63 1uep_A Membrane associated gua 98.9 7.8E-10 2.7E-14 91.6 5.3 77 178-256 18-96 (103)
64 2d92_A INAD-like protein; PDZ 98.9 2.8E-09 9.5E-14 89.1 8.7 77 180-256 26-105 (108)
65 2jre_A C60-1 PDZ domain peptid 98.9 1.6E-09 5.4E-14 90.4 7.0 80 176-256 21-104 (108)
66 2jik_A Synaptojanin-2 binding 98.9 3.7E-09 1.3E-13 87.1 9.2 76 180-256 18-97 (101)
67 2f5y_A Regulator of G-protein 98.9 2.8E-09 9.7E-14 86.1 8.2 71 179-256 13-83 (91)
68 2iwn_A Multiple PDZ domain pro 98.9 2E-09 6.9E-14 87.7 7.4 79 177-256 12-93 (97)
69 1rgw_A ZAsp protein; PDZ, cyph 98.9 2E-09 7E-14 85.6 7.3 74 180-256 11-84 (85)
70 1ujd_A KIAA0559 protein; PDZ d 98.9 5.8E-09 2E-13 88.5 10.3 76 180-256 30-109 (117)
71 3r68_A Na(+)/H(+) exchange reg 98.9 1.8E-09 6.2E-14 87.8 6.9 74 179-256 15-88 (95)
72 1vb7_A PDZ and LIM domain 2; P 98.9 1.2E-09 4.1E-14 88.9 5.8 75 180-257 16-90 (94)
73 1wi2_A Riken cDNA 2700099C19; 98.9 2.4E-09 8.3E-14 88.8 7.6 74 179-256 26-99 (104)
74 2awx_A Synapse associated prot 98.9 5E-09 1.7E-13 87.0 9.5 77 180-257 14-94 (105)
75 2ego_A General receptor for ph 98.9 4.7E-09 1.6E-13 85.7 9.2 76 179-255 15-95 (96)
76 1ueq_A Membrane associated gua 98.9 3.3E-09 1.1E-13 90.9 8.6 76 179-256 29-106 (123)
77 2fe5_A Presynaptic protein SAP 98.9 5.1E-09 1.8E-13 84.9 9.3 76 180-256 14-93 (94)
78 2i1n_A Discs, large homolog 3; 98.9 3.1E-09 1E-13 87.7 8.0 78 179-257 14-95 (102)
79 2vsv_A Rhophilin-2; scaffold p 98.9 3.4E-09 1.2E-13 88.9 8.4 71 180-256 34-104 (109)
80 1wif_A RSGI RUH-020, riken cDN 98.9 1.6E-09 5.3E-14 93.4 6.4 74 177-255 35-110 (126)
81 1i16_A Interleukin 16, LCF; cy 98.9 9.5E-10 3.3E-14 95.2 5.1 78 179-256 39-118 (130)
82 4fgm_A Aminopeptidase N family 98.9 1.9E-09 6.5E-14 116.1 8.6 149 101-266 397-562 (597)
83 2o2t_A Multiple PDZ domain pro 98.9 2.6E-09 9E-14 90.4 7.7 78 179-257 31-111 (117)
84 3ngh_A PDZ domain-containing p 98.9 1.1E-09 3.6E-14 91.2 5.1 59 197-256 27-85 (106)
85 2ejy_A 55 kDa erythrocyte memb 98.9 2.6E-09 8.9E-14 87.7 7.3 72 179-255 23-95 (97)
86 2qkv_A Inactivation-NO-after-p 98.9 4.3E-09 1.5E-13 86.0 8.6 73 178-256 18-91 (96)
87 3axa_A Afadin, nectin-3, prote 98.9 7.4E-09 2.5E-13 86.1 10.2 78 179-257 20-99 (106)
88 3cyy_A Tight junction protein 98.9 6E-09 2E-13 84.1 9.4 60 197-257 24-84 (92)
89 3id1_A Regulator of sigma E pr 98.9 3.3E-09 1.1E-13 86.7 7.8 66 198-265 4-70 (95)
90 2kjd_A Sodium/hydrogen exchang 98.9 2.4E-09 8.1E-14 92.2 7.3 77 178-257 18-94 (128)
91 1wha_A KIAA0147 protein, scrib 98.9 2.7E-09 9.1E-14 88.7 7.2 79 179-258 17-100 (105)
92 1wf7_A Enigma homologue protei 98.9 1.3E-09 4.3E-14 90.3 5.1 75 180-257 15-89 (103)
93 2yt7_A Amyloid beta A4 precurs 98.9 3.7E-09 1.3E-13 87.3 7.9 76 180-255 21-98 (101)
94 1d5g_A Human phosphatase HPTP1 98.9 4.7E-09 1.6E-13 85.5 8.5 76 180-256 16-93 (96)
95 1wfg_A Regulating synaptic mem 98.9 4.5E-09 1.5E-13 91.1 8.8 78 179-256 47-127 (131)
96 2fne_A Multiple PDZ domain pro 98.9 4.7E-09 1.6E-13 89.1 8.7 76 180-256 36-113 (117)
97 1uez_A KIAA1526 protein; PDZ d 98.9 3.1E-09 1E-13 87.6 7.3 76 178-257 19-94 (101)
98 1qav_A Alpha-1 syntrophin (res 98.9 5.2E-09 1.8E-13 84.3 8.5 73 179-254 15-88 (90)
99 1v5l_A PDZ and LIM domain 3; a 98.9 1.5E-09 5.1E-14 89.9 5.3 75 180-257 15-89 (103)
100 2eeg_A PDZ and LIM domain prot 98.9 1.7E-09 5.9E-14 88.0 5.6 74 180-256 18-91 (94)
101 2q9v_A Membrane-associated gua 98.9 2.6E-09 8.9E-14 86.0 6.5 75 179-255 12-88 (90)
102 3i4w_A Disks large homolog 4; 98.9 5.1E-09 1.8E-13 86.6 8.4 73 180-256 22-95 (104)
103 2yuy_A RHO GTPase activating p 98.9 2.7E-10 9.2E-15 98.1 0.6 92 160-257 26-121 (126)
104 2kpk_A Membrane-associated gua 98.9 5.7E-09 1.9E-13 90.1 8.8 75 180-256 29-105 (129)
105 2rcz_A Tight junction protein 98.9 8.7E-09 3E-13 80.8 9.0 58 197-255 22-80 (81)
106 1v62_A KIAA1719 protein; struc 98.9 4.3E-09 1.5E-13 89.3 7.7 76 180-257 27-103 (117)
107 3qe1_A Sorting nexin-27, G pro 98.9 6.3E-09 2.2E-13 86.6 8.5 76 180-256 17-102 (107)
108 1w9e_A Syntenin 1; cell adhesi 98.9 9E-09 3.1E-13 92.6 10.2 83 177-266 13-95 (166)
109 1va8_A Maguk P55 subfamily mem 98.9 6.5E-09 2.2E-13 87.6 8.6 72 180-257 37-109 (113)
110 1wf8_A Neurabin-I; PDZ domain, 98.9 7E-09 2.4E-13 86.4 8.6 77 179-256 19-100 (107)
111 1v5q_A GRIP1 homolog, glutamat 98.9 2.6E-09 9E-14 91.3 6.1 80 177-256 24-107 (122)
112 3tsv_A Tight junction protein 98.8 6.5E-09 2.2E-13 89.2 8.3 73 180-256 39-112 (124)
113 2g5m_B Neurabin-2; spinophilin 98.8 2.8E-09 9.7E-14 89.7 5.9 79 179-258 14-97 (113)
114 2z17_A Pleckstrin homology SEC 98.8 2.2E-09 7.6E-14 89.0 5.0 90 160-252 9-103 (104)
115 1y7n_A Amyloid beta A4 precurs 98.8 3.2E-09 1.1E-13 85.9 5.6 66 179-254 23-88 (90)
116 2h2b_A Tight junction protein 98.8 8E-09 2.7E-13 85.9 8.2 77 179-257 18-98 (107)
117 1ujv_A Membrane associated gua 98.8 1.3E-08 4.4E-13 83.2 9.2 74 177-257 18-92 (96)
118 3qik_A Phosphatidylinositol 3, 98.8 4.5E-09 1.5E-13 86.3 6.3 70 179-253 27-98 (101)
119 2dkr_A LIN-7 homolog B; LIN-7B 98.8 5.9E-09 2E-13 84.4 7.0 75 179-256 15-90 (93)
120 2la8_A Inactivation-NO-after-p 98.8 7.4E-09 2.5E-13 86.4 7.6 72 179-256 13-85 (106)
121 4e34_A Golgi-associated PDZ an 98.8 9.8E-09 3.4E-13 82.0 7.9 73 179-254 13-86 (87)
122 1um1_A KIAA1849 protein, RSGI 98.8 9.3E-09 3.2E-13 86.0 8.1 77 179-256 18-96 (110)
123 3e17_A Tight junction protein 98.8 1.1E-08 3.6E-13 82.3 8.1 66 181-255 14-80 (88)
124 2kv8_A RGS12, regulator of G-p 98.8 2.6E-09 9E-14 84.7 4.4 69 180-255 13-81 (83)
125 2e7k_A Maguk P55 subfamily mem 98.8 1E-08 3.5E-13 83.0 7.9 70 179-255 17-87 (91)
126 1x6d_A Interleukin-16; PDZ dom 98.8 3.6E-09 1.2E-13 89.9 5.5 80 177-257 24-104 (119)
127 3nfk_A Tyrosine-protein phosph 98.8 1.2E-08 4.1E-13 84.9 8.3 74 179-254 28-106 (107)
128 3i18_A LMO2051 protein; alpha- 98.8 9.8E-09 3.3E-13 84.6 7.6 58 197-257 8-66 (100)
129 2d8i_A T-cell lymphoma invasio 98.8 8.9E-09 3E-13 87.1 7.4 72 181-256 30-101 (114)
130 2dlu_A INAD-like protein; PDZ 98.8 5.9E-09 2E-13 87.4 6.3 74 179-257 25-99 (111)
131 2kjp_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 87.9 2.6 57 198-257 3-60 (91)
132 1uf1_A KIAA1526 protein; PDZ d 98.8 1.2E-08 4.2E-13 87.8 8.2 81 180-264 32-112 (128)
133 1uew_A Membrane associated gua 98.8 8.2E-09 2.8E-13 87.1 6.8 78 179-257 21-104 (114)
134 1uit_A Human discs large 5 pro 98.8 1.8E-08 6.3E-13 85.3 9.0 73 180-257 30-102 (117)
135 3hpk_A Protein interacting wit 98.8 1.2E-08 4.2E-13 87.4 8.0 75 178-255 29-104 (125)
136 3egg_C Spinophilin; PP1, serin 98.8 1.4E-08 4.7E-13 92.1 8.7 75 180-255 91-170 (170)
137 2i6v_A General secretion pathw 98.8 1.2E-08 4E-13 81.8 6.9 58 197-256 20-78 (87)
138 2dc2_A GOPC, golgi associated 98.8 1.7E-08 5.9E-13 83.5 8.1 75 179-256 20-95 (103)
139 1nf3_C PAR-6B; semi-CRIB motif 98.8 1.7E-08 5.9E-13 87.0 8.3 77 179-256 41-125 (128)
140 1tp5_A Presynaptic density pro 98.8 1.7E-08 5.9E-13 85.6 8.1 74 179-256 24-98 (119)
141 3k1r_A Harmonin; protein-prote 98.8 2.1E-08 7.1E-13 92.6 9.2 74 179-256 95-168 (192)
142 1whd_A RGS3, regulator of G-pr 98.7 2.8E-09 9.4E-14 87.9 2.8 72 178-256 24-95 (100)
143 3gge_A PDZ domain-containing p 98.7 2.1E-08 7.3E-13 81.5 7.9 73 180-256 16-90 (95)
144 2gzv_A PRKCA-binding protein; 98.7 2.3E-08 8E-13 84.4 8.5 74 179-255 35-109 (114)
145 1q7x_A PDZ2B domain of PTP-BAS 98.7 8.3E-09 2.8E-13 86.1 5.6 77 180-257 20-103 (108)
146 2cs5_A Tyrosine-protein phosph 98.7 8.6E-09 2.9E-13 87.6 5.8 77 178-256 25-106 (119)
147 2eei_A PDZ domain-containing p 98.7 4E-09 1.4E-13 87.7 3.5 75 179-257 18-92 (106)
148 1mfg_A ERB-B2 interacting prot 98.7 2.6E-08 8.8E-13 81.0 8.3 73 181-255 14-92 (95)
149 2l97_A HTRA, putative serine p 98.7 1.2E-08 4.2E-13 88.7 6.7 65 197-266 58-123 (134)
150 2daz_A INAD-like protein; PDZ 98.7 1.8E-08 6.2E-13 86.3 7.2 77 179-257 35-112 (124)
151 1uhp_A Hypothetical protein KI 98.7 2.5E-08 8.7E-13 83.0 7.8 77 179-256 18-101 (107)
152 2edp_A Fragment, shroom family 98.7 1.1E-08 3.7E-13 84.2 5.3 74 180-257 21-95 (100)
153 2lob_A Golgi-associated PDZ an 98.2 1.6E-09 5.4E-14 91.4 0.0 92 159-253 13-110 (112)
154 1uju_A Scribble; PDZ domain, c 98.7 9.3E-09 3.2E-13 86.2 4.8 78 178-256 19-104 (111)
155 2zpm_A Regulator of sigma E pr 98.7 7.3E-09 2.5E-13 83.5 3.9 65 198-266 6-70 (91)
156 2i4s_A General secretion pathw 98.7 4.3E-08 1.5E-12 81.5 8.7 58 197-256 38-96 (105)
157 2eno_A Synaptojanin-2-binding 98.7 2.3E-08 7.7E-13 85.1 7.1 76 180-256 28-107 (120)
158 2yub_A LIMK-2, LIM domain kina 98.7 1.3E-08 4.3E-13 86.7 5.3 75 181-257 30-106 (118)
159 2kl1_A YLBL protein; structure 98.7 6.8E-09 2.3E-13 84.6 3.2 65 197-266 6-71 (94)
160 3soe_A Membrane-associated gua 98.7 8.6E-08 2.9E-12 80.6 10.0 72 179-257 22-94 (113)
161 1x5n_A Harmonin; PDZ domain, u 98.7 3.4E-08 1.2E-12 83.1 7.5 73 179-255 26-98 (114)
162 1y8t_A Hypothetical protein RV 98.7 5E-08 1.7E-12 97.4 9.8 74 179-257 228-303 (324)
163 2ehr_A INAD-like protein; PDZ 98.7 3.3E-08 1.1E-12 83.6 7.3 77 179-256 26-110 (117)
164 3gsl_A Disks large homolog 4; 98.7 7.5E-08 2.6E-12 88.3 10.1 78 179-257 15-96 (196)
165 3rle_A Golgi reassembly-stacki 98.7 3.8E-08 1.3E-12 92.1 8.1 71 195-266 15-86 (209)
166 2csj_A TJP2 protein; PDZ domai 98.7 1.6E-08 5.5E-13 85.6 4.9 77 178-256 24-104 (117)
167 1n7t_A 99-MER peptide of densi 98.7 2.9E-08 9.8E-13 82.0 6.3 74 180-255 21-100 (103)
168 2pzd_A Serine protease HTRA2; 98.7 2.8E-08 9.5E-13 83.5 6.2 65 197-267 36-100 (113)
169 1te0_A Protease DEGS; two doma 98.6 9.2E-08 3.1E-12 95.2 10.6 83 179-265 220-310 (318)
170 2qbw_A PDZ-fibronectin fusion 98.6 9.1E-08 3.1E-12 88.1 9.8 69 196-266 24-95 (195)
171 1ufx_A KIAA1526 protein; PDZ d 98.6 2.1E-08 7E-13 83.2 4.9 77 179-256 16-97 (103)
172 1p1d_A PDZ45, glutamate recept 98.6 6.9E-08 2.4E-12 89.2 8.8 81 177-257 15-99 (196)
173 2qt5_A Glutamate receptor-inte 98.6 1.1E-07 3.7E-12 88.0 9.3 76 178-256 17-93 (200)
174 2p3w_A Probable serine proteas 98.6 6.2E-08 2.1E-12 81.3 6.9 64 197-266 36-99 (112)
175 1vae_A Rhophilin 2, rhophilin, 98.6 1.8E-08 6.3E-13 84.7 3.6 70 180-255 26-95 (111)
176 3tsz_A Tight junction protein 98.6 5.8E-08 2E-12 99.4 6.9 73 180-256 19-92 (391)
177 1z87_A Alpha-1-syntrophin; pro 98.5 6E-08 2.1E-12 93.7 6.0 76 178-256 87-163 (263)
178 1um7_A Synapse-associated prot 98.5 2.8E-08 9.6E-13 83.3 3.2 74 179-256 25-99 (113)
179 2edv_A FERM and PDZ domain-con 98.5 3.5E-08 1.2E-12 80.6 3.2 69 180-256 21-89 (96)
180 3stj_A Protease DEGQ; serine p 98.5 1.1E-07 3.9E-12 95.7 7.0 60 197-258 264-324 (345)
181 3r0h_A INAD, inactivation-NO-a 98.5 2.9E-07 9.9E-12 85.4 8.6 71 180-256 125-196 (206)
182 2krg_A Na(+)/H(+) exchange reg 98.5 2.7E-08 9.1E-13 93.6 1.4 75 178-256 18-93 (216)
183 2hga_A Conserved protein MTH13 98.5 3.6E-07 1.2E-11 78.4 7.9 56 197-256 26-82 (125)
184 3rle_A Golgi reassembly-stacki 98.4 3.8E-07 1.3E-11 85.3 7.2 85 180-267 95-181 (209)
185 1p1d_A PDZ45, glutamate recept 98.4 3.1E-07 1.1E-11 84.7 6.4 76 180-256 119-195 (196)
186 3gsl_A Disks large homolog 4; 98.4 5.1E-07 1.7E-11 82.6 7.7 77 180-257 111-191 (196)
187 3qo6_A Protease DO-like 1, chl 98.4 4E-07 1.4E-11 91.7 7.6 61 196-258 251-323 (348)
188 3shw_A Tight junction protein 98.4 4.4E-07 1.5E-11 94.5 8.0 73 180-256 11-84 (468)
189 3pv2_A DEGQ; trypsin fold, PDZ 98.4 7.6E-07 2.6E-11 92.8 9.3 76 179-256 257-341 (451)
190 2qt5_A Glutamate receptor-inte 98.3 8.3E-07 2.8E-11 82.0 7.4 76 180-256 117-195 (200)
191 2xkx_A Disks large homolog 4; 98.3 1.1E-06 3.7E-11 96.9 9.1 88 179-267 69-162 (721)
192 1lcy_A HTRA2 serine protease; 98.3 7.8E-07 2.7E-11 88.8 7.0 63 197-265 257-319 (325)
193 4a8c_A Periplasmic PH-dependen 98.2 1.8E-06 6E-11 89.7 8.1 60 196-257 263-323 (436)
194 3pv2_A DEGQ; trypsin fold, PDZ 98.1 7.1E-06 2.4E-10 85.5 8.7 58 196-256 386-443 (451)
195 3num_A Serine protease HTRA1; 98.1 5.1E-07 1.7E-11 90.3 0.0 58 197-258 255-312 (332)
196 4a8c_A Periplasmic PH-dependen 98.0 9.2E-06 3.2E-10 84.3 8.7 57 197-256 364-420 (436)
197 1ky9_A Protease DO, DEGP, HTRA 98.0 2.1E-06 7E-11 89.5 2.1 59 197-257 287-346 (448)
198 2xkx_A Disks large homolog 4; 97.9 2.1E-05 7.2E-10 86.7 8.7 73 180-256 318-391 (721)
199 4fln_A Protease DO-like 2, chl 97.7 6.8E-05 2.3E-09 79.4 8.6 86 179-265 252-354 (539)
200 1ky9_A Protease DO, DEGP, HTRA 97.6 1.1E-05 3.8E-10 84.0 0.0 58 197-257 384-441 (448)
201 1w9e_A Syntenin 1; cell adhesi 97.4 0.00018 6E-09 64.2 6.4 63 180-252 100-162 (166)
202 3suz_A Amyloid beta A4 precurs 97.3 4.1E-05 1.4E-09 78.2 0.0 55 199-254 318-372 (388)
203 4fln_A Protease DO-like 2, chl 96.3 0.0046 1.6E-07 65.4 6.3 66 196-268 415-480 (539)
204 3viv_A 441AA long hypothetical 90.4 0.93 3.2E-05 42.3 8.7 83 286-395 7-93 (230)
205 1y7o_A ATP-dependent CLP prote 84.6 1.2 4.1E-05 41.1 5.6 82 287-396 45-127 (218)
206 1yg6_A ATP-dependent CLP prote 79.4 2.2 7.5E-05 38.5 5.2 82 287-396 26-108 (193)
207 2cby_A ATP-dependent CLP prote 79.4 2.2 7.5E-05 39.0 5.2 71 299-396 38-109 (208)
208 2f6i_A ATP-dependent CLP prote 75.3 3 0.0001 38.4 4.9 71 299-396 50-120 (215)
209 3qwd_A ATP-dependent CLP prote 70.3 5.2 0.00018 36.4 5.2 81 287-395 27-108 (203)
210 3p2l_A ATP-dependent CLP prote 67.3 6.5 0.00022 35.7 5.2 81 287-395 30-111 (201)
211 1tg6_A Putative ATP-dependent 60.6 9.2 0.00032 36.5 5.0 81 287-395 82-163 (277)
212 1j7x_A IRBP, interphotorecepto 55.2 14 0.00048 35.5 5.4 57 102-165 5-65 (302)
213 3bl4_A Uncharacterized protein 48.2 39 0.0013 28.0 6.3 49 286-335 18-69 (124)
214 3rst_A Signal peptide peptidas 36.5 22 0.00074 32.9 3.3 69 302-393 31-100 (240)
215 2j3t_D Trafficking protein par 30.7 52 0.0018 30.2 4.7 51 197-253 46-99 (219)
216 3bf0_A Protease 4; bacterial, 27.0 18 0.00063 38.3 1.1 85 286-394 300-393 (593)
217 2kln_A Probable sulphate-trans 25.7 88 0.003 25.3 5.0 65 287-351 14-85 (130)
218 1th8_B Anti-sigma F factor ant 23.8 90 0.0031 24.2 4.6 46 287-332 11-58 (116)
219 4gm2_A ATP-dependent CLP prote 20.6 89 0.0031 28.2 4.2 81 286-394 27-118 (205)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=2.6e-61 Score=497.55 Aligned_cols=349 Identities=34% Similarity=0.603 Sum_probs=302.9
Q ss_pred cchHHHHHHHHHHHHhhcccCCCCCCChhhHHHHHHHHhh-ccccChHHHHHHHHHHHHhcCCCceeecChHHhhhhh--
Q 012084 99 KTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILS-SSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA-- 175 (471)
Q Consensus 99 ~~~~~~f~~vw~~v~~~y~d~~~~~~~~~dW~~~~e~~~~-~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~-- 175 (471)
++++++|+++|+.++++|+++. |++.||++++++|++ ...+++.+++.+|+.|+++|+|+|+.|+++++++.+.
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~---~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~ 79 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKS---FNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRG 79 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTT---GGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHhccc---ccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHh
Confidence 4688999999999999999875 889999999999987 5678899999999999999999999999999876543
Q ss_pred -cccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 176 -RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 176 -~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
.+.+.|+|+.+......+ .+++|..|.++|||++|||++||+|++|||+++.++...++..++++..|++|+|+|.|
T Consensus 80 ~~g~~~giG~~~~~~~~~~--~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r 157 (388)
T 1fc6_A 80 TAGSVTGVGLEITYDGGSG--KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHA 157 (388)
T ss_dssp SSSSCBBCSEEEEECTTCS--SCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEE
T ss_pred hcCceEEEEEEEEEeecCC--CcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEe
Confidence 467889999997630012 26899999999999999999999999999999999877888889999999999999999
Q ss_pred CCCC-CeeEEEEeeeeeeeccceeeeee--------ccCCCCeEEEEEeCchhhhHHHHHHHHHHHHHhcCCcEEEEecc
Q 012084 255 GNCG-PIESIQVQRQLVARTPVFYRLEH--------LDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGASYFILDLR 325 (471)
Q Consensus 255 ~~~~-~~~~v~l~r~~~~~~~v~~~~~~--------~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIIDLR 325 (471)
++.. ..++++++|..+...++.+.... .+..+++||||+|++|...+.++|.+++.+|+++++++||||||
T Consensus 158 ~g~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDLR 237 (388)
T 1fc6_A 158 PGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIR 237 (388)
T ss_dssp TTEEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEECT
T ss_pred CCCCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 7632 25778888887776677655421 23446799999999999888899999999999889999999999
Q ss_pred CCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEecCCCC-CCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEc
Q 012084 326 DNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSP-LVTAPVIVLVNNRTASASEIVASALHDNCRAVLVG 404 (471)
Q Consensus 326 ~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~pi~VLvd~~TaSaaE~fa~~lk~~~~a~vVG 404 (471)
+|+||++..+..++++|++++ .+.++..|.+... .+...... .+++|++||||++|+||||+|+++||+++++++||
T Consensus 238 ~N~GG~~~~~~~~~~~f~~~~-~i~~~~~r~~~~~-~~~~~~~~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~vG 315 (388)
T 1fc6_A 238 NNGGGLFPAGVNVARMLVDRG-DLVLIADSQGIRD-IYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAG 315 (388)
T ss_dssp TCCCBCHHHHHHHHHHHCSSS-EEEEEEETTEEEE-EEECCSCCSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHHcCCC-cEEEEecCCCcee-EEecCCccccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEEe
Confidence 999999999999999999987 4666666765432 23333334 37899999999999999999999999999999999
Q ss_pred cCCCCCceeceEEECCCCCEEEEEEEEEEcCCCCcccCCcccCcEEcCCC
Q 012084 405 EKTFGKGLIQSVYELHDGSGVVVTIGKYVTPNHMDINGNGIEPDYRNLPA 454 (471)
Q Consensus 405 e~T~G~g~~~~~~~L~~g~~l~~t~~~~~~~~g~~~e~~GV~PDi~v~~t 454 (471)
++|+|++..+..+.|+||+.+++|++++++|+|+.+++.||.|||+|.++
T Consensus 316 ~~T~Gkg~~~~~~~L~~g~~l~~t~~~~~~p~G~~~~~~Gi~PDi~v~~~ 365 (388)
T 1fc6_A 316 ERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPE 365 (388)
T ss_dssp SCCCCCCEEEEEEECTTSCEEEEEEEEEECTTSCBCTTTCCCCSEECCTT
T ss_pred ecCCCCCeeeeEEEcCCCCEEEEEEEEEEcCCCCCccCCCcCCCEEeCCc
Confidence 99999999999999999999999999999999999999999999999876
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.8e-48 Score=444.49 Aligned_cols=334 Identities=17% Similarity=0.248 Sum_probs=270.8
Q ss_pred cchHHHHHHHHHHHHhhcccCCCCCCChhhH-HHHHHHHhh--ccccChHHHHHHHHHHHHhcCCCceeecChHHhhhhh
Q 012084 99 KTNEGIVEEAWQIVNDSFLDTGRHRWTPQNW-QRKREDILS--SSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA 175 (471)
Q Consensus 99 ~~~~~~f~~vw~~v~~~y~d~~~~~~~~~dW-~~~~e~~~~--~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~ 175 (471)
.++.++|+++|+.++++|+++. ++.|| ++++++|++ ....++.+++.++++|+++|+|+|+++. +.++....
T Consensus 658 ~~~~~~~~~~~~~~~~~y~~~~----~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~~~ 732 (1045)
T 1k32_A 658 EEFLQMYDEAWKLARDNYWNEA----VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTDKD 732 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHCSCHH----HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhcCCC----CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcccc
Confidence 4578999999999999999864 67899 999999985 3568999999999999999999999665 45555555
Q ss_pred cccceeeeEEEEEeeCCCCceEEEEEEEcCC--------CchhhcC--CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCC
Q 012084 176 RYDMSGIGINLREVPDANGVVTLKVLGLILD--------GPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSE 245 (471)
Q Consensus 176 ~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~--------spA~~aG--l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g 245 (471)
.+.+.|+|+.+... ++ +++|..|+++ |||+++| |+ ||+|++|||+++.++. ++..+++|+.|
T Consensus 733 ~~~~~g~G~~~~~~---~~--~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g 804 (1045)
T 1k32_A 733 PFRSGRIACDFKLD---GD--HYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAG 804 (1045)
T ss_dssp CCCCCBCSEEEEEE---TT--EEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTT
T ss_pred ccccceecEEEEEe---CC--EEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCC
Confidence 66778999999762 23 7899999998 9999999 99 9999999999999874 67788999999
Q ss_pred cEEEEEEEcCCCCCeeEEEEeeeeeeeccceee-------eeeccCCCCeEEEEEeCchhhhHHHHHHHHHHHHHhcCCc
Q 012084 246 TFVTIEVKHGNCGPIESIQVQRQLVARTPVFYR-------LEHLDNGTTSVGYMRLKEFNALARKDLVTAMKRLQDMGAS 318 (471)
Q Consensus 246 ~~v~l~v~r~~~~~~~~v~l~r~~~~~~~v~~~-------~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~ 318 (471)
++|+|+|.|++ +..+++++.+.. ...++.++ ....+..+++||||+|++|.....++|.+++.++ ++++
T Consensus 805 ~~v~l~v~r~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~igyi~~~~f~~~~~~~~~~~~~~~--~~~~ 880 (1045)
T 1k32_A 805 TSARIRLSGKG-GDKRDLMIDILD-DDRFIRYRSWVEANRRYVHERSKGTIGYIHIPDMGMMGLNEFYRLFINE--SSYQ 880 (1045)
T ss_dssp SEEEEEEECSS-SCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHHHTTTSEEEEECCCBSHHHHHHHHHHHHHH--TTSS
T ss_pred CEEEEEEECCC-CceEEEEEEEcc-cccchhhhhhhhhcceeEEEecCCCEEEEEECccCchHHHHHHHHHHHh--CCCC
Confidence 99999999976 345567766421 11222211 0011224678999999999988888898888765 4799
Q ss_pred EEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEecCCCCCCCCCEEEEECCCCCChHHHHHHHHhcCC
Q 012084 319 YFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVLVNNRTASASEIVASALHDNC 398 (471)
Q Consensus 319 ~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk~~~ 398 (471)
+||||||+|+||++..+ ++.+| .++ .+.+...|.+... .+.. ..+.+|++||||++||||||+|+++||+++
T Consensus 881 ~liiDlR~N~GG~~~~~--~~~~~-~~~-~~~~~~~~~~~~~-~~~~---~~~~~~~~vL~~~~taSa~e~~~~~l~~~~ 952 (1045)
T 1k32_A 881 GLIVDVRFNGGGFVSQL--IIEKL-MNK-RIGYDNPRRGTLS-PYPT---NSVRGKIIAITNEYAGSDGDIFSFSFKKLG 952 (1045)
T ss_dssp EEEEECTTCCCBSCHHH--HHHHH-TCB-CCEEEEESSSCCE-EEST---TCBCSEEEEEECTTCCTHHHHHHHHHHHTT
T ss_pred EEEEEcCcCCCCCHHHH--HHhhc-cCC-cEEEEecCCCcee-eccc---cCCCCCEEEEECCCCccHHHHHHHHHhhcC
Confidence 99999999999999865 46766 333 5667777765543 2322 247899999999999999999999999999
Q ss_pred CeEEEccCCCCCceec--eEEECCCCCEEEEE-EEEEEcCCCCcccCCcccCcEEcCCChHHH
Q 012084 399 RAVLVGEKTFGKGLIQ--SVYELHDGSGVVVT-IGKYVTPNHMDINGNGIEPDYRNLPAWNDV 458 (471)
Q Consensus 399 ~a~vVGe~T~G~g~~~--~~~~L~~g~~l~~t-~~~~~~~~g~~~e~~GV~PDi~v~~t~~d~ 458 (471)
+++|||++|+| |..+ ..+.|+||+.+.+| +++|++|+|..+|+.||+|||+|.++.+++
T Consensus 953 ~~~~vG~~t~G-g~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~Gi~Pdi~v~~~~~~~ 1014 (1045)
T 1k32_A 953 LGKLIGTRTWG-GVVGITPKRRLIDGTVLTQPEFAFWFRDAGFGVENYGVDPDVEIEYAPHDY 1014 (1045)
T ss_dssp SEEEEESCCCC-CCEECCCCCBCTTSCEECCCCEEEEETTTBTTTTTTCCCCSEECCCCHHHH
T ss_pred CEEEEccCCCC-CccccCceEEcCCCCeEEEeeEEEEECCCCCccCCCCccCCEEeCCChHHh
Confidence 99999999999 5443 56899999999998 789999999999999999999999876653
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=1.7e-46 Score=386.52 Aligned_cols=294 Identities=23% Similarity=0.314 Sum_probs=222.8
Q ss_pred HHHHHHhcCCCc-eeecChHHhhhhhcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcC
Q 012084 151 IKRMLASLGDPY-TRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVR 229 (471)
Q Consensus 151 i~~ml~~L~D~H-t~~l~~~~~~~~~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~ 229 (471)
+..++... |+| +++.+..+ . .....|||+.+....+.+....++|..|.++|||++|||++||+|++|||+++.
T Consensus 49 f~~l~~~~-D~~fS~i~~~~~-~---~~~~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~ 123 (403)
T 3k50_A 49 LKKAVASM-DNGFSKIDSLLD-E---PIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYIT 123 (403)
T ss_dssp HHHHSCTT-CSSCSEEEECCS-S---CCCBCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBC
T ss_pred HHHhCccc-CCCceeEccccc-c---CccccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEcc
Confidence 34444444 884 44443333 1 223667888776532211212478999999999999999999999999999999
Q ss_pred CCCHHHHHHhhCCCCCcEEEEEEEcCCCCCe----------eEEEEee-eeeeeccce-eeeeeccCCCCeEEEEEeCch
Q 012084 230 GKSAFEVSSLLQGPSETFVTIEVKHGNCGPI----------ESIQVQR-QLVARTPVF-YRLEHLDNGTTSVGYMRLKEF 297 (471)
Q Consensus 230 ~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~----------~~v~l~r-~~~~~~~v~-~~~~~~~~~~~~igYi~i~sF 297 (471)
.+. +..++++ +|++|+|++.|++.... .++++.. ..+...|+. .++. +..+++||||+|++|
T Consensus 124 ~~~---~~~~l~~-~g~~v~l~v~R~g~~~~~~~~~~~i~~~~~~l~~~r~~~~~pv~~~~v~--~~~~~~iGYI~i~~F 197 (403)
T 3k50_A 124 KKV---ESELLQG-STRQLQIGVYKEVVGEDGEVTGGVVPIGETTMPASRSLVDKPVHRFEII--PWNGKKVGYLMYNEF 197 (403)
T ss_dssp TTT---GGGGTSC-SCEEEEEEEEEEEC-----CEEEEEEEEEEEECCCBCCCCCSEEEEEEE--EETTEEEEEEEECCB
T ss_pred chh---HHHHhhC-CCCEEEEEEEeCCcccccccccccccccceEEEeeeeeeeccceeeeee--eeCCCcEEEEEEccc
Confidence 874 5677888 89999999988764320 1233321 112223332 2322 334679999999999
Q ss_pred hh-------hHHHHHHHHHHHHHhcCCcEEEEeccCCCCccHHHHHHHHhhcccCCce---EEEEe--ccCcccceeEec
Q 012084 298 NA-------LARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGET---ITYTV--GRDPQYQKTIVA 365 (471)
Q Consensus 298 ~~-------~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~---~~~~~--~r~~~~~~~~~~ 365 (471)
.. .+.++|+++|++|+++++++||||||+|+||.+..|..++++|++++.. +.+.+ .|.+.....+..
T Consensus 198 ~~~t~~~~~~~~~~l~~al~~l~~~~~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 277 (403)
T 3k50_A 198 KAGPTTDSQAYNDDLRRAFRDFQTGGVNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTF 277 (403)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHHHTTCCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEEC
T ss_pred cCcccccchhhHHHHHHHHHHHHHCCCcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEec
Confidence 76 4568999999999999999999999999999999999999999998753 66655 444333233332
Q ss_pred CC------CCCCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEccCCCCCceeceEEE-CCCCCEEEEEEEEEEcCCCC
Q 012084 366 DN------SPLVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYE-LHDGSGVVVTIGKYVTPNHM 438 (471)
Q Consensus 366 ~~------~~~~~~pi~VLvd~~TaSaaE~fa~~lk~~~~a~vVGe~T~G~g~~~~~~~-L~~g~~l~~t~~~~~~~~g~ 438 (471)
.. .....+|++||||+.|+||||+|+++||+++++++||++|+|++.++..+. +++|+.+++++.++++|+|.
T Consensus 278 ~~~~~~~g~~~~~~~~~vL~~~~taSa~E~~~~~l~~~~~~~~iG~~T~G~~~~~~~~~~~~~g~~l~~t~~~~~~~~G~ 357 (403)
T 3k50_A 278 NPELIQSGANLNLSTVYVLTTNATRGAAEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILNLVVCNVYNAEEK 357 (403)
T ss_dssp CGGGTTTSCCCCCSEEEEEECTTCCTHHHHHHHHHTTTSEEEEEESCCCCCCEEEEEEECSSSCEEEEEEEEEEECTTSC
T ss_pred cccccccccccCCCCEEEEECCCCccHHHHHHHHHhhCCCEEEEeecCCCCCeeeeEEEeCCCCcEEEEEEEEEECCCCC
Confidence 21 233457999999999999999999999999999999999999998888886 78899999999999999999
Q ss_pred cccCCcccCcEEcCCCh
Q 012084 439 DINGNGIEPDYRNLPAW 455 (471)
Q Consensus 439 ~~e~~GV~PDi~v~~t~ 455 (471)
.+++.||+|||+|..+.
T Consensus 358 ~~~~~Gi~PDi~v~~~~ 374 (403)
T 3k50_A 358 SDYATGFKPTYEYNEDS 374 (403)
T ss_dssp CCCTTCCCCSEECCGGG
T ss_pred CccCCCcCceEEeCCCc
Confidence 99999999999997753
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=100.00 E-value=9e-34 Score=297.22 Aligned_cols=343 Identities=17% Similarity=0.231 Sum_probs=232.6
Q ss_pred chHHHHHHHHHHHHhhcccCC----CCCCCh-hhHHHHHHHHhhccccChHHHHHHHHHHHHhcCCCceeecChHHhhhh
Q 012084 100 TNEGIVEEAWQIVNDSFLDTG----RHRWTP-QNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKM 174 (471)
Q Consensus 100 ~~~~~f~~vw~~v~~~y~d~~----~~~~~~-~dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~ 174 (471)
..-+.|+.+-.+++.+|.-.. ..+|+- ......+.++......++.+|+..+..+++.++|+|+.+..+..
T Consensus 6 ~~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~---- 81 (583)
T 3dor_A 6 NALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLRTQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI---- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC----
T ss_pred HHHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc----
Confidence 456788889999998886321 123331 11222344444445678999999999999999999999865421
Q ss_pred hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCH--------------HHHHHhh
Q 012084 175 ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA--------------FEVSSLL 240 (471)
Q Consensus 175 ~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~--------------~~~~~ll 240 (471)
.+..+|+.+... .+| +++|.++... . ++++.||+|++|||+++.++.. ..+.+.|
T Consensus 82 ---~~a~~Pf~vki~--iDG--~i~V~dv~~~-~---s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~Al~~L 150 (583)
T 3dor_A 82 ---ESAYLPYTVQKS--SDG--RFYFVDIMTF-S---SEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESAALRTL 150 (583)
T ss_dssp ---CEEECSEEEEEC--TTS--CEEEEEECSS-C---CSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHHHHHHH
T ss_pred ---ccccCCeEEEEE--ECC--cEEEEecccc-c---cCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 233455655521 233 5777665322 2 2799999999999999975411 0111111
Q ss_pred ------CCC--CCcEEEEEEEcCCCCCeeEEEEeeee---------------------------e---e----eccc---
Q 012084 241 ------QGP--SETFVTIEVKHGNCGPIESIQVQRQL---------------------------V---A----RTPV--- 275 (471)
Q Consensus 241 ------~g~--~g~~v~l~v~r~~~~~~~~v~l~r~~---------------------------~---~----~~~v--- 275 (471)
.+. +...++|+++++. +..+++.+.-.. . . .+|.
T Consensus 151 t~R~~~l~~~~p~~~~tlk~~~~~-G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (583)
T 3dor_A 151 FSRMASLGHKVPSGRTTLKIRRPF-GTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSSSLFY 229 (583)
T ss_dssp TEEEGGGTCCCCCSEEEEEEECTT-SCEEEEEEECEEECCCSCCHHHHGGGCCCCCC-----------------------
T ss_pred hhhHHhhccCCCCCceEEEEECCC-CcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCccccc
Confidence 121 3347888886643 455665543100 0 0 0000
Q ss_pred ----ee-----------ee------------------------------eec---cCCCC--eEEEEEeCchhhh-----
Q 012084 276 ----FY-----------RL------------------------------EHL---DNGTT--SVGYMRLKEFNAL----- 300 (471)
Q Consensus 276 ----~~-----------~~------------------------------~~~---~~~~~--~igYi~i~sF~~~----- 300 (471)
.+ +. .++ +..+. +||||||++|...
T Consensus 230 ~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~~~~~ 309 (583)
T 3dor_A 230 SPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQDMEDF 309 (583)
T ss_dssp ----------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGGSTTC
T ss_pred cccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCcccccc
Confidence 00 00 011 12233 7999999999643
Q ss_pred ------HHHHHHHHHHHHHhcCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEE----e-----------------
Q 012084 301 ------ARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYT----V----------------- 353 (471)
Q Consensus 301 ------~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~----~----------------- 353 (471)
...+|.+.+..+.. ++++||||+|+|+||+......++++|.+++-..... .
T Consensus 310 ~~~~~~~~~~f~~~~~~~~~-~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 388 (583)
T 3dor_A 310 DPSGPPPWEEFAKIIQVFSS-NTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTLLENV 388 (583)
T ss_dssp CTTSCCHHHHHHHHHHHHHH-HCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCcHHHHHHHHHHHhhc-CCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHHHHhh
Confidence 23567777776654 7999999999999999999999999998865211110 0
Q ss_pred --c---c--------------------------------Ccc--cc--------eeEecCCCCCCCCCEEEEECCCCCCh
Q 012084 354 --G---R--------------------------------DPQ--YQ--------KTIVADNSPLVTAPVIVLVNNRTASA 386 (471)
Q Consensus 354 --~---r--------------------------------~~~--~~--------~~~~~~~~~~~~~pi~VLvd~~TaSa 386 (471)
. | .+. .. ..+.+.+...+++|++||||++|+||
T Consensus 389 ~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~SASA 468 (583)
T 3dor_A 389 DTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQDFSC 468 (583)
T ss_dssp CSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTTBCTH
T ss_pred hhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCCCccH
Confidence 0 0 000 00 12223344568999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEccCCCCCceeceEEECCCCCEE---EEEEEEEEcCCCCcccCCcccCcEEcCCChHHHH
Q 012084 387 SEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDGSGV---VVTIGKYVTPNHMDINGNGIEPDYRNLPAWNDVT 459 (471)
Q Consensus 387 aE~fa~~lk~~~~a~vVGe~T~G~g~~~~~~~L~~g~~l---~~t~~~~~~~~g~~~e~~GV~PDi~v~~t~~d~~ 459 (471)
||+|+++||++++|++||++|+|+++.+..+.||||+.+ ++|+.++++|+|..+|+.||.|||+|.++.+|+.
T Consensus 469 SEifA~aLKd~~ra~lVGe~T~Gkg~vq~~~~Lpdg~~l~~lklT~a~~~tp~G~~ie~~GV~PDI~V~~t~~dl~ 544 (583)
T 3dor_A 469 ADFFPVVLKDNDRALIVGTRTAGAGGFVFNVQFPNRTGIKTCSLTGSLAVREHGAFIENIGVEPHIDLPFTANDIR 544 (583)
T ss_dssp HHHHHHHHHHTTCEEEEESCCCCCCSCEEEECCCCSSCEEEEEEECEEEECTTSCBCTTTCCCCSEECCCCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeCCCCCCceeeEEEcCCCCeEEEEEeeeEEEECCCCCCcCCCCcCCcEEeCCCHHHHH
Confidence 999999999999999999999999999999999999866 5999999999999999999999999999988765
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.98 E-value=9.3e-32 Score=267.90 Aligned_cols=178 Identities=24% Similarity=0.323 Sum_probs=142.0
Q ss_pred CCeEEEEEeCchhhh-HHHHHHHHHHHHH---hcCCcEEEEeccCCCCccHHHHHHHHhhcccCCc--eEEEEeccCccc
Q 012084 286 TTSVGYMRLKEFNAL-ARKDLVTAMKRLQ---DMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGE--TITYTVGRDPQY 359 (471)
Q Consensus 286 ~~~igYi~i~sF~~~-~~~~l~~~l~~l~---~~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~--~~~~~~~r~~~~ 359 (471)
+++||||+|++|... ..+++.+++.++. -+++++||||||+|+||++..+..++++|++++. .+.+...|.+..
T Consensus 105 ~~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~ 184 (302)
T 1j7x_A 105 PGNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNS 184 (302)
T ss_dssp TTTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTC
T ss_pred CCCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCC
Confidence 478999999999865 4566777764321 1579999999999999999999999999998864 355666666553
Q ss_pred ceeEecCCC----C-CCCCCEEEEECCCCCChHHHHHHHHhcCCCeEEEccCCCCCceeceEEECCCC-CEEEEEEEEEE
Q 012084 360 QKTIVADNS----P-LVTAPVIVLVNNRTASASEIVASALHDNCRAVLVGEKTFGKGLIQSVYELHDG-SGVVVTIGKYV 433 (471)
Q Consensus 360 ~~~~~~~~~----~-~~~~pi~VLvd~~TaSaaE~fa~~lk~~~~a~vVGe~T~G~g~~~~~~~L~~g-~~l~~t~~~~~ 433 (471)
...+...+. . .+++|++||||++|+||||+|+++||+++++++||++|+|++..+..+.|+|| ..+.+++.+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG~~T~Gk~~~~~~~~L~~g~~~lt~p~~~~~ 264 (302)
T 1j7x_A 185 TDEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIGEITSGNLMHSKVFPFGDTQLSVTVPIINFI 264 (302)
T ss_dssp CEEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEESCCCCCCSCEEEEECTTSSEEEEEECEEEE
T ss_pred ceeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEcccCCCCCCCceEEEeCCCcEEEEEEEEEEE
Confidence 333332211 1 25799999999999999999999999999999999999999999999999997 34444558999
Q ss_pred cCCCCcccCCcccCcEEcCC--ChHHHHHHHh
Q 012084 434 TPNHMDINGNGIEPDYRNLP--AWNDVTKHLS 463 (471)
Q Consensus 434 ~~~g~~~e~~GV~PDi~v~~--t~~d~~~~l~ 463 (471)
+|+|+.+++.||.|||+|.+ .++...+||.
T Consensus 265 ~p~G~~~~~~Gi~PDi~v~~d~~L~~A~~~l~ 296 (302)
T 1j7x_A 265 DSNGDYWLGGGVVPDAIVLADEALDKAKEIIA 296 (302)
T ss_dssp ETTSCBCCCSCCCCSEECCGGGHHHHHHHHHH
T ss_pred CCCCCccCCcCcCCCeeeCHHHHHHHHHHHHH
Confidence 99999999999999999864 3445555554
No 6
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=109.17 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=74.7
Q ss_pred HhcCCCceeecChHHhhhh---hcccceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCC
Q 012084 156 ASLGDPYTRFLSPAEFSKM---ARYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG 230 (471)
Q Consensus 156 ~~L~D~Ht~~l~~~~~~~~---~~~~~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~ 230 (471)
..+.|+|+.|+++.+++.+ ..+...++|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 4567999999998876543 235567899998753211 112368999999999999999 99999999999999999
Q ss_pred CCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 231 KSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 231 ~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
++..++..+++. +.|+.+.|+|.|++
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 877788888876 35889999998864
No 7
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.26 E-value=9.2e-12 Score=104.74 Aligned_cols=96 Identities=26% Similarity=0.373 Sum_probs=76.1
Q ss_pred ceeecChHHhhhh---hcccceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHH
Q 012084 162 YTRFLSPAEFSKM---ARYDMSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEV 236 (471)
Q Consensus 162 Ht~~l~~~~~~~~---~~~~~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~ 236 (471)
||.|+++.+++.+ ......|+|+.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 8899998876543 234567899999763211 111368999999999999999 99999999999999999877888
Q ss_pred HHhhCC-CCCcEEEEEEEcCCC
Q 012084 237 SSLLQG-PSETFVTIEVKHGNC 257 (471)
Q Consensus 237 ~~ll~g-~~g~~v~l~v~r~~~ 257 (471)
..++++ +.|+.+.|+|.|++.
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 888876 358999999988763
No 8
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.24 E-value=9.7e-12 Score=104.98 Aligned_cols=98 Identities=26% Similarity=0.384 Sum_probs=65.6
Q ss_pred HhcCCCceeecChHHhhhhh-cccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCH
Q 012084 156 ASLGDPYTRFLSPAEFSKMA-RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSA 233 (471)
Q Consensus 156 ~~L~D~Ht~~l~~~~~~~~~-~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~ 233 (471)
..+.|+|+.|+++.+..... .....|+|+.+..-.+ ...+++|..|.++|||+++| |++||+|++|||+++.+++.
T Consensus 10 ~~~~d~~t~~~~~~~~~~v~l~~~~~glG~~l~~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~ 87 (112)
T 2r4h_A 10 GVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGRE--YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH 87 (112)
T ss_dssp -------------CCEEEEEEECBTTBTSEEEEECGG--GTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred cCCCCCcccccCCCceEEEEEEcCCCccCEEEecccc--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence 45679999999887754321 2234689999865211 11368999999999999999 99999999999999999877
Q ss_pred HHHHHhhCCCCCcEEEEEEEcCC
Q 012084 234 FEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 234 ~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++..+++. .|..++|+|.|++
T Consensus 88 ~~~~~~l~~-~g~~v~l~v~R~~ 109 (112)
T 2r4h_A 88 SRAIELIKN-GGRRVRLFLKRGE 109 (112)
T ss_dssp HHHHHHHHT-TTTEEEEEEECCE
T ss_pred HHHHHHHHc-CCCeEEEEEEeCC
Confidence 777777765 5788999998864
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.23 E-value=8e-12 Score=106.43 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=69.5
Q ss_pred cCCCceeecChHHhhhh--hcccceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCC
Q 012084 158 LGDPYTRFLSPAEFSKM--ARYDMSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (471)
Q Consensus 158 L~D~Ht~~l~~~~~~~~--~~~~~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~ 231 (471)
+.|+|+.|+++++.... .+. ..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~k~-~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~ 90 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLFKG-PKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEV 90 (117)
T ss_dssp --------CEEEEEEEEEEECB-TTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CCCCcccccCCCceEEEEEEeC-CCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 45999999998876542 233 37899998742110 112368999999999999999 999999999999999988
Q ss_pred CHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 232 SAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 232 ~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
+..++..+++.. |+.|+|+|.|++
T Consensus 91 ~~~~~~~~l~~~-g~~v~l~v~R~~ 114 (117)
T 2byg_A 91 THEEAVAILKNT-SEVVYLKVGKPT 114 (117)
T ss_dssp CHHHHHHHHHTC-CSEEEEEEEEEE
T ss_pred CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 888888888754 789999998754
No 10
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.20 E-value=1.6e-12 Score=110.13 Aligned_cols=93 Identities=28% Similarity=0.307 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCceeecChHHhhhhhcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCC
Q 012084 151 IKRMLASLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRG 230 (471)
Q Consensus 151 i~~ml~~L~D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~ 230 (471)
++.|+..| |+|+.++.++..+ ++|+.+.. ..+..+++|..|.++|||+++||++||+|++|||+++.+
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~--------~~G~~l~~---~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~ 72 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQ--------NYGFFLRI---EKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 72 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTC--------CCSCEEEC---CTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCC--------cccEEEEE---ecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC
Confidence 45678888 9999998876432 33444432 111236889999999999999999999999999999999
Q ss_pred CCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 231 KSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 231 ~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
+...++..+++.. |+.++|+|.|++
T Consensus 73 ~~~~~~~~~l~~~-g~~v~l~v~R~~ 97 (114)
T 2edz_A 73 EEHAQVVELVRKS-GNSVTLLVLDGD 97 (114)
T ss_dssp SCHHHHHHHHHHT-CSEEEEEEECHH
T ss_pred CCHHHHHHHHHcC-CCEEEEEEEECC
Confidence 8777887777654 899999998865
No 11
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.19 E-value=8e-11 Score=96.25 Aligned_cols=79 Identities=29% Similarity=0.364 Sum_probs=65.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~ 258 (471)
..|+|+.+....+.++..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.+.|+|.|++..
T Consensus 13 ~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 13 PQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CCcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 35889988764322333478999999999999999999999999999999998778888888765 89999999997643
No 12
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=98.41 Aligned_cols=91 Identities=26% Similarity=0.360 Sum_probs=70.5
Q ss_pred CCceeecChHHhhhhhcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHh
Q 012084 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSL 239 (471)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~l 239 (471)
|||+.+.+... .+ .....|+|+.+... .+..+++|..|.++|||+++||++||+|++|||+++..++..++..+
T Consensus 3 Dp~~~~~~~~~--~l-~~~~~g~G~~~~~~---~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~ 76 (98)
T 2jxo_A 3 DPFTMLRPRLC--TM-KKGPSGYGFNLHSD---KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSA 76 (98)
T ss_dssp CSSCSSCCEEE--EE-ECTTTCCCEEEECC---CSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred CCCccCCcEEE--EE-EeCCCcccEEEEec---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence 78887765321 11 22346899998752 22236899999999999999999999999999999999777888888
Q ss_pred hCCCCCcEEEEEEEcCC
Q 012084 240 LQGPSETFVTIEVKHGN 256 (471)
Q Consensus 240 l~g~~g~~v~l~v~r~~ 256 (471)
++...++.+.|+|.|++
T Consensus 77 l~~~~~~~~~l~v~R~g 93 (98)
T 2jxo_A 77 IRAGGDETKLLVVDRET 93 (98)
T ss_dssp HHTTTTEEEEEECCHHH
T ss_pred HHhCCCcEEEEEEECCc
Confidence 87777788888887754
No 13
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.12 E-value=2.3e-10 Score=96.25 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=67.2
Q ss_pred cccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCC-CCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 176 ~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl-~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
++.+.|+|+.+... ++..+++|..|.++|||+++|| ++||+|++|||+++.+++..++..+++...|+.+.|++.|
T Consensus 9 ~~~~~glG~~~~~~---~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 85 (112)
T 1qau_A 9 KRKVGGLGFLVKER---VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 85 (112)
T ss_dssp CBTTTBTSEEEEEC---SSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred cCCCCceeEEEEec---CCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEe
Confidence 34467899998762 2223689999999999999998 9999999999999999777888888877778999999999
Q ss_pred CCCCC
Q 012084 255 GNCGP 259 (471)
Q Consensus 255 ~~~~~ 259 (471)
++...
T Consensus 86 ~g~~~ 90 (112)
T 1qau_A 86 GPEGF 90 (112)
T ss_dssp CCTTS
T ss_pred CCccc
Confidence 87543
No 14
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.12 E-value=8.6e-11 Score=102.18 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=75.2
Q ss_pred hcCCCceeecChHHhhhhhcccceeeeEEEEEeeCCCC----------ceEEEEEEEcCCCchhhcCCCCCCEEEEECCE
Q 012084 157 SLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGV 226 (471)
Q Consensus 157 ~L~D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d~~g----------~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~ 226 (471)
.+.|+|+.|..+...-.+.+....|+||.+..-.+..+ ..+++|..|.++|||+++||++||+|++|||+
T Consensus 16 ~~~~~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~ 95 (132)
T 3l4f_D 16 VPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQ 95 (132)
T ss_dssp ---CCSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSS
T ss_pred ccCCCCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCE
Confidence 45599999988765444444445689999876322110 01489999999999999999999999999999
Q ss_pred EcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 227 DVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 227 ~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
++..++..++..+++. .|..+.|+|.+..
T Consensus 96 ~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~ 124 (132)
T 3l4f_D 96 NVVKVGHRQVVNMIRQ-GGNTLMVKVVMVT 124 (132)
T ss_dssp BCTTSCHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred ECCCCCHHHHHHHHHc-CCCEEEEEEEECC
Confidence 9999888888888876 6788999998754
No 15
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.11 E-value=3.1e-10 Score=91.58 Aligned_cols=74 Identities=24% Similarity=0.295 Sum_probs=62.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+....+ ..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.|+|.|++
T Consensus 14 ~~g~G~~~~~~~~---~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 87 (90)
T 2he4_A 14 PQGYGFNLHSDKS---RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPS 87 (90)
T ss_dssp TTBCCEEEEECSS---SSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred CCCccEEEEccCC---CCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccC
Confidence 3588999875221 2368999999999999999999999999999999998778888888865 889999998865
No 16
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.11 E-value=8.3e-11 Score=101.02 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=66.5
Q ss_pred hcCCCceeecChHHhhhhhcccceeeeEEEEEeeCC-------CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEc
Q 012084 157 SLGDPYTRFLSPAEFSKMARYDMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDV 228 (471)
Q Consensus 157 ~L~D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d~-------~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v 228 (471)
++.|+|+.|+.|...... +....++|+.+....+. +...+++|..|.++|||++|| |++||+|++|||+++
T Consensus 14 ~~~d~~s~~~~p~~v~l~-k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v 92 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELW-REPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDL 92 (123)
T ss_dssp ---------CCCEEEEEC-CCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC
T ss_pred ccccCCcccCCCEEEEEE-ecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEC
Confidence 456899999988765433 23345778877542110 011358999999999999999 999999999999999
Q ss_pred CCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 229 RGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 229 ~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.+++..++..++++. +..++|+|.|..
T Consensus 93 ~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 93 RDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp TTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred CCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 998778888888765 348999998754
No 17
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=101.94 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=74.3
Q ss_pred CCceeecChHHhhhh-hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHH
Q 012084 160 DPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVS 237 (471)
Q Consensus 160 D~Ht~~l~~~~~~~~-~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~ 237 (471)
|+|+.|+.+.+.... ......|+|+.+....+.. ..+++|..|.++|||+++| |++||+|++|||+++.++...++.
T Consensus 7 Dp~s~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~ 85 (116)
T 2dm8_A 7 GPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTP-LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAI 85 (116)
T ss_dssp CSSSCCCCTTSCEEEEEECCSSCCCCCCBCCTTSS-CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHH
T ss_pred CcccCccCCCCEEEEEEEECCCcccEEEeCCCCCC-cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 999999988764322 2344578898875421111 0268999999999999999 999999999999999998777887
Q ss_pred HhhCCCCCcEEEEEEEcCCC
Q 012084 238 SLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 238 ~ll~g~~g~~v~l~v~r~~~ 257 (471)
.+++... +.++|+|.|++.
T Consensus 86 ~~l~~~~-~~v~l~v~R~~~ 104 (116)
T 2dm8_A 86 TALRQTP-QKVRLVVYRDEA 104 (116)
T ss_dssp HHHHTCC-SEEEEEEECCSS
T ss_pred HHHHhCC-CeEEEEEEeCCc
Confidence 7776543 889999988763
No 18
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.09 E-value=3e-10 Score=91.82 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=62.2
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++.++...++..+++. .|+.+.|+|.|++.
T Consensus 13 ~~~G~~l~~~~~--~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 13 GPWGFRLVGGKD--FEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEH 87 (91)
T ss_dssp SCCSEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECC
T ss_pred CCCCEEEEccCC--CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 467888764221 1136899999999999999999999999999999999876778778877 78999999998763
No 19
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.09 E-value=7.1e-11 Score=102.01 Aligned_cols=98 Identities=22% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCceeecChHHhhhh------hcccceeeeEEEEEeeCC--CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcC
Q 012084 159 GDPYTRFLSPAEFSKM------ARYDMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR 229 (471)
Q Consensus 159 ~D~Ht~~l~~~~~~~~------~~~~~~giG~~~~~~~d~--~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~ 229 (471)
.|+|+.|+++.+.+.. .+....|+|+.+....+. .+...++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 4799999998764321 124567899998753321 012368999999999999999 9999999999999999
Q ss_pred CCCHHHHHHhhCC------CCCcEEEEEEEcCC
Q 012084 230 GKSAFEVSSLLQG------PSETFVTIEVKHGN 256 (471)
Q Consensus 230 ~~~~~~~~~ll~g------~~g~~v~l~v~r~~ 256 (471)
+++..++..+|+. +.++.|+|+|.|.+
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~ 122 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence 9887888888874 35889999998865
No 20
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.08 E-value=5.9e-11 Score=101.14 Aligned_cols=96 Identities=23% Similarity=0.287 Sum_probs=69.6
Q ss_pred CCCceeecChHHhh-----hhhcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCC
Q 012084 159 GDPYTRFLSPAEFS-----KMARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKS 232 (471)
Q Consensus 159 ~D~Ht~~l~~~~~~-----~~~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~ 232 (471)
.|||+.|. +.+.. ........|+|+.+..-.+.. ...++|..|.++|||+++ ||++||+|++|||+++..++
T Consensus 3 ~dP~s~~~-~~~~~~~~~~~~~~~~~~glG~~i~gg~~~~-~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~ 80 (118)
T 1v6b_A 3 EGAATMFS-PEQIAGKDVRLLRIKKEGSLDLALEGGVDSP-VGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80 (118)
T ss_dssp CCCCSSSC-HHHHSSCCEEEEEEESCSCCCCEEEEBTTSS-SCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCB
T ss_pred CCCcceec-ccccCCceEEEEEECCCCccCEEEEcccCCC-CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCC
Confidence 49999984 44322 111122358889875321111 124899999999999999 89999999999999999988
Q ss_pred HHHHHHhhCCC---CCcEEEEEEEcCC
Q 012084 233 AFEVSSLLQGP---SETFVTIEVKHGN 256 (471)
Q Consensus 233 ~~~~~~ll~g~---~g~~v~l~v~r~~ 256 (471)
..++..+++.. .|+.++|+|.|..
T Consensus 81 ~~~~~~~l~~~~~~~g~~v~l~v~r~~ 107 (118)
T 1v6b_A 81 LAEAEAALQKAWNQGGDWIDLVVAVCP 107 (118)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence 77777777542 4789999998853
No 21
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=99.07 E-value=4.5e-10 Score=90.72 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=60.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.|+|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.+.++|++
T Consensus 14 ~g~G~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 14 NGYGFHLHGE---KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87 (91)
T ss_dssp TBCCEEEEEC---TTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred CcccEEEEec---CCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence 4789988652 2223689999999999999999999999999999999988788888888776666666666654
No 22
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=99.07 E-value=1.7e-10 Score=91.73 Aligned_cols=67 Identities=24% Similarity=0.437 Sum_probs=58.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
...++||.++. | .|..++++|||+++||++||+|++|||+++.+++.+++.++|+ ..|++|+|+|..
T Consensus 14 ~~g~~Gf~i~~-----g----~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 14 STGHVGFIFKN-----G----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp TTSCCCEEEET-----T----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCCCeEEEEEC-----C----EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 34578998752 2 3789999999999999999999999999999999999999998 789999999864
No 23
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=99.06 E-value=5.8e-10 Score=89.51 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=60.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.++...++..+++.. ++.+.|+|.|++
T Consensus 13 ~~~G~~l~~g~~--~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g 86 (88)
T 2uzc_A 13 APWGFRLQGGKD--FNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRES 86 (88)
T ss_dssp SCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CcccEEEECcCC--CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCC
Confidence 468888764221 12368999999999999999999999999999999998777777777655 889999998865
No 24
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=99.05 E-value=1.2e-09 Score=91.15 Aligned_cols=87 Identities=26% Similarity=0.392 Sum_probs=65.3
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..++|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..++|+|.|
T Consensus 12 ~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R 90 (106)
T 4amh_A 12 SKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNT-SDFVYLKVAK 90 (106)
T ss_dssp CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSC-CSEEEEEEEC
T ss_pred CCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEe
Confidence 45788887631110 012368999999999999999 999999999999999988777777777654 6699999999
Q ss_pred CCC-CCeeEEEEe
Q 012084 255 GNC-GPIESIQVQ 266 (471)
Q Consensus 255 ~~~-~~~~~v~l~ 266 (471)
++. ....++++.
T Consensus 91 ~~~~~~~~~v~l~ 103 (106)
T 4amh_A 91 PGSGEKIMEIKLI 103 (106)
T ss_dssp CSSSCSEEEEEEE
T ss_pred CCCCCeEEEEEEe
Confidence 764 234455554
No 25
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=99.05 E-value=5.3e-10 Score=91.52 Aligned_cols=75 Identities=27% Similarity=0.408 Sum_probs=62.2
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+....+ ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++ ..|+.+.|+|.|++.
T Consensus 16 ~~lG~~i~~~~~--~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 16 GPLGITISGTEE--PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp SCCCEEEECCSS--TTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCcCEEEEcccC--CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 468999865321 11368899999999999999 9999999999999999887778888887 578899999998764
No 26
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.05 E-value=6e-10 Score=89.27 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++... +.+.|+|.|++
T Consensus 12 ~~lG~~l~~~~~--~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~ 85 (87)
T 2pa1_A 12 APWGFRITGGRD--FHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRIT 85 (87)
T ss_dssp SCCSEEEEEEGG--GTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred CccCEEEecccC--CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecC
Confidence 578888864221 123789999999999999999999999999999999977788888887665 88999998875
No 27
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.04 E-value=7.4e-10 Score=97.14 Aligned_cols=79 Identities=24% Similarity=0.256 Sum_probs=64.7
Q ss_pred ceeeeEEEEEeeCC----------CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEE
Q 012084 179 MSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV 248 (471)
Q Consensus 179 ~~giG~~~~~~~d~----------~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v 248 (471)
..++|+.+....+. +...+++|..|.++|||++|||++||+|++|||+++.+++..++..+++...|+.+
T Consensus 37 ~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v 116 (139)
T 2vz5_A 37 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116 (139)
T ss_dssp EEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEE
T ss_pred cccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEE
Confidence 45789987541110 11247899999999999999999999999999999998777888888988788999
Q ss_pred EEEEEcCCC
Q 012084 249 TIEVKHGNC 257 (471)
Q Consensus 249 ~l~v~r~~~ 257 (471)
+|+|.|++.
T Consensus 117 ~l~v~R~g~ 125 (139)
T 2vz5_A 117 RLLVTRQSL 125 (139)
T ss_dssp EEEEEECC-
T ss_pred EEEEEECCE
Confidence 999999764
No 28
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=97.02 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=69.8
Q ss_pred CCCceeecChHHhhhh--hcccceeeeEEEEEeeC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHH
Q 012084 159 GDPYTRFLSPAEFSKM--ARYDMSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAF 234 (471)
Q Consensus 159 ~D~Ht~~l~~~~~~~~--~~~~~~giG~~~~~~~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~ 234 (471)
+|+|+.|+.+...+.. .+....++|+.+..-.+ ..+...++|..|.++|||+++| |++||+|++|||+++.+++..
T Consensus 13 ~~~~~~~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~ 92 (118)
T 3b76_A 13 LGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS 92 (118)
T ss_dssp -----CCCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred CCccccccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence 5788888877654432 23345789999875211 0122358999999999999999 999999999999999988888
Q ss_pred HHHHhhCCCCCcEEEEEEEcC
Q 012084 235 EVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 235 ~~~~ll~g~~g~~v~l~v~r~ 255 (471)
++..+++.. +.+++|+|.|.
T Consensus 93 ~~~~~l~~~-~~~v~L~v~R~ 112 (118)
T 3b76_A 93 EAVALLKRT-SSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHSC-CSEEEEEEEEE
T ss_pred HHHHHHHcC-CCeEEEEEEEC
Confidence 888888754 67799998764
No 29
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=99.03 E-value=4.3e-10 Score=94.16 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=62.6
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC--CCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP--SETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~--~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+..+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .+..|+|+|.|..
T Consensus 17 ~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~ 96 (108)
T 3cbz_A 17 NFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSG 96 (108)
T ss_dssp CCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred CccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence 5788888653222223479999999999999999 999999999999999998888888888654 3456999998865
Q ss_pred C
Q 012084 257 C 257 (471)
Q Consensus 257 ~ 257 (471)
.
T Consensus 97 ~ 97 (108)
T 3cbz_A 97 G 97 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 30
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.03 E-value=7.5e-11 Score=97.61 Aligned_cols=92 Identities=26% Similarity=0.385 Sum_probs=69.9
Q ss_pred eeecChHHhhhh---hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHH
Q 012084 163 TRFLSPAEFSKM---ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSS 238 (471)
Q Consensus 163 t~~l~~~~~~~~---~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ 238 (471)
+.|+++.+++.+ ......|+|+.+.... +...+++|..|.++|||+++| |++||+|++|||+++.+++..++..
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~--~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~ 79 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGR--EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIE 79 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEET--TTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEeccc--cCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence 456666654432 1234567899886532 222478999999999999999 9999999999999999987777777
Q ss_pred hhCCCCCcEEEEEEEcCCC
Q 012084 239 LLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 239 ll~g~~g~~v~l~v~r~~~ 257 (471)
+++ ..|..+.|+|.|++.
T Consensus 80 ~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 80 LIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHH-HHCSEECEEEECTTC
T ss_pred HHH-cCCCeEEEEEEECCC
Confidence 776 567899999998763
No 31
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=99.03 E-value=1.3e-10 Score=93.99 Aligned_cols=72 Identities=28% Similarity=0.376 Sum_probs=58.6
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 181 giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
++|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.++|+|.|++
T Consensus 15 ~~G~~l~~~---~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~ 86 (91)
T 2vsp_A 15 GYGFHLNAI---RGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKK 86 (91)
T ss_dssp BTSCCCBCC---TTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC--
T ss_pred cccEEEEec---cCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence 677777542 222367899999999999999999999999999999977778888888876 899999999875
No 32
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=99.02 E-value=1.2e-09 Score=88.86 Aligned_cols=72 Identities=29% Similarity=0.492 Sum_probs=60.4
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~ 258 (471)
..++|+.+.. + .+++|..|.++|||+++||++||+|++|||+++..+...++...++ .|+.++|+|.|++..
T Consensus 18 ~~~~G~~l~~---~---~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~~~ 89 (93)
T 2dls_A 18 QHGFGFTVSG---D---RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSSSG 89 (93)
T ss_dssp SSSCCEEEEC---S---SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCCCC
T ss_pred CCceeEEEeC---C---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECCCC
Confidence 4578988753 2 2588999999999999999999999999999999987667777775 589999999987643
No 33
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=99.02 E-value=7.8e-10 Score=89.00 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=59.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+ ....++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. |+.+.|+|.|++
T Consensus 13 ~~~G~~l~gg~~--~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~~ 86 (89)
T 2q3g_A 13 APWGFRLQGGKD--FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRAC-GERLSLGLSRAI 86 (89)
T ss_dssp SCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred CcccEEEECcCC--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 578888854211 12368899999999999999999999999999999988777777777654 788999998865
No 34
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=89.71 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=62.1
Q ss_pred ccceeeeEEEEEeeCC----CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEE
Q 012084 177 YDMSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~----~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v 252 (471)
....|+|+.+..-.+. +...+++|..|.++|||+++||++||+|++|||+++.++...+....++. .|+.++|+|
T Consensus 11 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 89 (97)
T 2w4f_A 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 89 (97)
T ss_dssp CBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEE
T ss_pred eCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEE
Confidence 3467899998642110 01236899999999999999999999999999999999876555555544 689999999
Q ss_pred EcCCC
Q 012084 253 KHGNC 257 (471)
Q Consensus 253 ~r~~~ 257 (471)
.|++.
T Consensus 90 ~R~g~ 94 (97)
T 2w4f_A 90 WRERE 94 (97)
T ss_dssp ECCSS
T ss_pred EeCCc
Confidence 99763
No 35
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.01 E-value=3.7e-10 Score=94.79 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=63.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC---CcEEEEEEEcC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~---g~~v~l~v~r~ 255 (471)
.|+||.+..-.+......++|..|.++|||+++| |++||+|++|||+++.+++..++.++|++.. ++.++|++.|+
T Consensus 25 ~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~ 104 (109)
T 1wi4_A 25 TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRS 104 (109)
T ss_dssp SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECC
T ss_pred CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeC
Confidence 6899998742211111258999999999999999 9999999999999999988888888887766 88999999886
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 105 ~ 105 (109)
T 1wi4_A 105 G 105 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=99.01 E-value=9.6e-10 Score=90.91 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCceeecChHHhhhhhcccceeeeEEEEEeeCCC-------CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCC
Q 012084 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPDAN-------GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGK 231 (471)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d~~-------g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~ 231 (471)
|+|+-++.+.. ..++|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++.++
T Consensus 4 dp~~v~l~~~~--------~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~ 75 (103)
T 2fcf_A 4 QPRRVELWREP--------SKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDA 75 (103)
T ss_dssp SCEEEEECCCC---------CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTC
T ss_pred CCEEEEEEeCC--------CCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCC
Confidence 77877776432 245677665421100 01368999999999999999 999999999999999998
Q ss_pred CHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 232 SAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 232 ~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
+..++..+++...+ .++|+|.|..
T Consensus 76 ~~~~~~~~l~~~~~-~v~l~v~r~~ 99 (103)
T 2fcf_A 76 SHEQAVEAIRKAGN-PVVFMVQSII 99 (103)
T ss_dssp CHHHHHHHHHTCCS-SEEEEEECCC
T ss_pred CHHHHHHHHHhCCC-cEEEEEEECC
Confidence 77888888876644 8999998865
No 37
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=4.6e-10 Score=93.08 Aligned_cols=79 Identities=27% Similarity=0.455 Sum_probs=63.2
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
...|+|+.+....+..+...++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .|+.+.|+|.|++
T Consensus 20 ~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 98 (104)
T 2djt_A 20 GYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPL 98 (104)
T ss_dssp CSSSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred CCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 456899998653221112368999999999999999 99999999999999999877777777765 5789999998876
Q ss_pred C
Q 012084 257 C 257 (471)
Q Consensus 257 ~ 257 (471)
.
T Consensus 99 ~ 99 (104)
T 2djt_A 99 S 99 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=99.00 E-value=7.2e-10 Score=89.25 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=61.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+.. . +...++|..|.++|||++ +||++||+|++|||+++.+++.+++.+++++..+ .++|+|.|++
T Consensus 12 ~~~lG~~i~~---~-~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~ 85 (88)
T 1kwa_A 12 DEPMGITLKM---N-ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSY 85 (88)
T ss_dssp SSCCCEEEEC---S-CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCC
T ss_pred CCceeEEEEe---C-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCc
Confidence 4578998864 1 123689999999999999 8899999999999999998888899899987776 8999998865
No 39
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=99.00 E-value=4.7e-10 Score=95.83 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=61.5
Q ss_pred ccceeeeEEEEEeeC-CCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 177 YDMSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 177 ~~~~giG~~~~~~~d-~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
....++|+.+..-.+ ..+...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +.+++|+|.|
T Consensus 33 ~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~-~~~v~l~v~r 111 (120)
T 2iwo_A 33 GPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVA 111 (120)
T ss_dssp ----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHC-CSEEEEEEEC
T ss_pred CCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 334588988864211 011236899999999999999 9999999999999999998888888888765 5569999998
Q ss_pred CCCC
Q 012084 255 GNCG 258 (471)
Q Consensus 255 ~~~~ 258 (471)
++..
T Consensus 112 ~g~~ 115 (120)
T 2iwo_A 112 GGDV 115 (120)
T ss_dssp CTTS
T ss_pred CCcc
Confidence 7643
No 40
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=99.00 E-value=7.6e-10 Score=95.45 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=62.9
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcC-CCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR-GKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~-~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++||.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++. .++..++..+++. .+..++|+|.|+
T Consensus 36 ~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~ 114 (128)
T 2db5_A 36 TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVARE 114 (128)
T ss_dssp SSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred CCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 46889888543221 122478999999999999999 9999999999999997 8888888888876 578999999886
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
.
T Consensus 115 ~ 115 (128)
T 2db5_A 115 P 115 (128)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=99.00 E-value=1.2e-09 Score=89.47 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=61.7
Q ss_pred ceeeeEEEEEeeCCC----CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 179 MSGIGINLREVPDAN----GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~d~~----g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..|+|+.+..-.+.. ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|+.++|+|.
T Consensus 16 ~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 94 (98)
T 1ihj_A 16 KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQ 94 (98)
T ss_dssp SSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEE
T ss_pred CCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEE
Confidence 458888885432211 12368999999999999999 99999999999999999877777777765 6889999998
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|++
T Consensus 95 R~g 97 (98)
T 1ihj_A 95 TFD 97 (98)
T ss_dssp EC-
T ss_pred eCC
Confidence 865
No 42
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=99.00 E-value=1.4e-09 Score=89.37 Aligned_cols=77 Identities=27% Similarity=0.337 Sum_probs=61.0
Q ss_pred eeeeEEEEEeeCCCCc-----eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 180 SGIGINLREVPDANGV-----VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~-----~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
.++|+.+.......+. .+++|..|.++|||+++||++||+|++|||+++.+++..++..+++ ..|+.+.|++.|
T Consensus 13 ~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r 91 (99)
T 3khf_A 13 KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTA 91 (99)
T ss_dssp CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEC
T ss_pred CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEE
Confidence 4677777643211110 2568999999999999999999999999999999887788877776 578999999998
Q ss_pred CCC
Q 012084 255 GNC 257 (471)
Q Consensus 255 ~~~ 257 (471)
+++
T Consensus 92 ~~~ 94 (99)
T 3khf_A 92 LEN 94 (99)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 43
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.00 E-value=1.1e-09 Score=91.69 Aligned_cols=80 Identities=30% Similarity=0.440 Sum_probs=63.0
Q ss_pred ccceeeeEEEEEeeC----CCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEE
Q 012084 177 YDMSGIGINLREVPD----ANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 177 ~~~~giG~~~~~~~d----~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v 252 (471)
....|+|+.+..-.+ .+...+++|..|.++|||+++||++||+|++|||+++..+...++...++. .|+.++|+|
T Consensus 23 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 101 (110)
T 1x5q_A 23 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101 (110)
T ss_dssp CSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEE
T ss_pred cCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEE
Confidence 446799999863111 011236899999999999999999999999999999999876666555654 789999999
Q ss_pred EcCCC
Q 012084 253 KHGNC 257 (471)
Q Consensus 253 ~r~~~ 257 (471)
.|++.
T Consensus 102 ~R~g~ 106 (110)
T 1x5q_A 102 WRESG 106 (110)
T ss_dssp EECSS
T ss_pred EECCc
Confidence 98763
No 44
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.99 E-value=1.7e-09 Score=89.63 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=62.3
Q ss_pred cceeeeEEEEEeeCC----------CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcE
Q 012084 178 DMSGIGINLREVPDA----------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (471)
Q Consensus 178 ~~~giG~~~~~~~d~----------~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~ 247 (471)
...++|+.+..-.+. ....+++|..|.++|||+++||++||+|++|||+++.+.+..++...++...|+.
T Consensus 17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 96 (104)
T 3sfj_A 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 96 (104)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 345788888721110 1224689999999999999999999999999999999887778888888788899
Q ss_pred EEEEEEc
Q 012084 248 VTIEVKH 254 (471)
Q Consensus 248 v~l~v~r 254 (471)
+.|+|.|
T Consensus 97 v~l~v~R 103 (104)
T 3sfj_A 97 VRLLVTR 103 (104)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9999876
No 45
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.99 E-value=1.4e-09 Score=86.70 Aligned_cols=74 Identities=27% Similarity=0.391 Sum_probs=59.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r 254 (471)
..|+|+.+..-. ++...++|..|.++|||+++| |++||+|++|||+++.+++..++.++++.. .|+.++|+|.|
T Consensus 10 ~~g~G~~i~~~~--~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 10 SRGFGFTVVGGD--EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TTBSSEEEEECC--STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCCEEEEccc--CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 357888886421 222358999999999999999 999999999999999988777887888663 48888888864
No 46
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.99 E-value=1.3e-09 Score=88.99 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=63.3
Q ss_pred ceeeeEEEEEeeCC--CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~--~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++|+.+..-.+. +...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|+.+.|+|.|+
T Consensus 13 ~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 91 (97)
T 2jil_A 13 GNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYD 91 (97)
T ss_dssp TTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 35788888653211 112478999999999999999 99999999999999999877888888876 789999999886
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 92 ~~ 93 (97)
T 2jil_A 92 VS 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 47
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.98 E-value=1.2e-10 Score=119.28 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=102.1
Q ss_pred ccchHHHHHHHHHHHHhhcccCCCCCCChhhHHHHHHHHhhccccChHHHHHHHHHHHHhcCCCceeecChHHhhhhh--
Q 012084 98 AKTNEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGDPYTRFLSPAEFSKMA-- 175 (471)
Q Consensus 98 ~~~~~~~f~~vw~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D~Ht~~l~~~~~~~~~-- 175 (471)
|..=.+.+.++|+...+.|++.. +++..+|. ...|..+..++..++|+++.|..+++.+...
T Consensus 148 a~~i~~ti~qaf~~~y~~~l~~~--gi~~~~~~--------------~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~ 211 (388)
T 3suz_A 148 AQLIAQSIGQAFSVAYQEFLRAN--GINPEDLS--------------QKEYSDIINTQEMYNDDLIHFSNSENCKELQLE 211 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCCTTTSC--------------HHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhhcccc--CcCccccc--------------hhhhcccccccccccchhhhhcccccceEEEEE
Confidence 44555688999999998888643 46666662 2334556677777778888888777654432
Q ss_pred cccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEE
Q 012084 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVK 253 (471)
Q Consensus 176 ~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~ 253 (471)
+..-.++|+.+....+.....+++|..|.++|||+++| |++||+|++|||+++.+++..++..++++. .+..++|++.
T Consensus 212 k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~ 291 (388)
T 3suz_A 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIV 291 (388)
T ss_dssp CCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEE
T ss_pred CCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccc
Confidence 22234677766431111111247899999999999999 999999999999999999777777888765 6778999998
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|.+
T Consensus 292 r~~ 294 (388)
T 3suz_A 292 SCP 294 (388)
T ss_dssp ECC
T ss_pred ccc
Confidence 865
No 48
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=98.97 E-value=6.4e-10 Score=89.65 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=57.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
.++|+.+... . .+++|..|.++|||+++||++||+|++|||+++...+..++..++.. ..|+.+.|+|.|++
T Consensus 17 ~~lG~~~~~~---~--~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 17 LDFGFTIKWD---I--PGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SCCSEEEEEE---T--TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEEec---C--CCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 4678877541 1 26899999999999999999999999999999955455677777754 35789999998864
No 49
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=87.44 Aligned_cols=73 Identities=26% Similarity=0.469 Sum_probs=56.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+....+ + ..++|..+ ++|||+ +||++||+|++|||+++.++...++..+++ ...|+++.|+|.|++
T Consensus 13 ~~g~G~~~~~~~~--~-~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 86 (88)
T 3bpu_A 13 PMGFGFTIADSPG--G-GGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86 (88)
T ss_dssp TTBSSCEEEECTT--S-SSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred CCceeEEEEecCC--C-CcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 3588999875321 1 25667665 999999 999999999999999999987778877776 567899999998865
No 50
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.96 E-value=1.6e-09 Score=88.18 Aligned_cols=75 Identities=25% Similarity=0.332 Sum_probs=60.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..++|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++ ..|+.+.|++.|++.
T Consensus 15 ~~~lG~~~~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 15 GEQLGIKLVRRTD---EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp TCCCCEEEEECSS---SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CCcccEEEEeccC---CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 3578888865322 2368999999999999999 9999999999999999887666666665 348899999988653
No 51
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.95 E-value=4e-10 Score=97.07 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=66.7
Q ss_pred cccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCC-CCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 176 RYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 176 ~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl-~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
++.+.|+|+.+... ++...++|..|.++|||+++|| ++||+|++|||+++.+++..++..++++..|+.+.|++.|
T Consensus 16 ~~~~~glG~~~~~~---~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 16 KRKVGGLGFLVKER---VSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp CTTTSCCSCCEEEC---TTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred eCCCCcEeEEEEec---CCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 34567899988762 2223689999999999999998 9999999999999999777888888887788999999999
Q ss_pred CCC
Q 012084 255 GNC 257 (471)
Q Consensus 255 ~~~ 257 (471)
++.
T Consensus 93 ~g~ 95 (127)
T 1b8q_A 93 GPE 95 (127)
T ss_dssp CCC
T ss_pred CCc
Confidence 764
No 52
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.95 E-value=3.1e-09 Score=86.94 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=61.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..|+|+.+..-.+.. ..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. ++.+.|+|.|++.
T Consensus 14 ~~~lG~~l~~~~~~~-~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 91 (98)
T 2opg_A 14 RTGLGLSIVGGSDTL-LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQT-PQRVRLTLYRDEA 91 (98)
T ss_dssp TTBTCEEEEECTTST-TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEECSS
T ss_pred CCcccEEEecCCCCC-CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcCCC
Confidence 457899887522111 1268999999999999999 999999999999999998767777777654 4789999988764
No 53
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.95 E-value=2.5e-09 Score=86.28 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=57.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.++|+.+..- ....+++|..|.++|||+++||++||+|++|||+++.++...++..+++ ..|+.+.|+|.|+
T Consensus 19 ~~~G~~~~~~---~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADG---LLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEEC---TTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCccEEEEec---cCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 4678887642 1123689999999999999999999999999999999987666655555 3478899998774
No 54
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-09 Score=88.71 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=60.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..+|+.+....+ ...+++|..|.++|||+++||++||+|++|||+++..+...++...++. +..+.|+|.|++.
T Consensus 22 ~~lG~~~~~~~~--~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 22 GRLGFSVRGGSE--HGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp SSCSEEEECCTT--TTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CCccEEEEcccc--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 458888865321 1136899999999999999999999999999999999876777777754 7889999998764
No 55
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.95 E-value=8.7e-10 Score=95.19 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=65.1
Q ss_pred cceeeeEEEEEeeCCC---CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 178 DMSGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~---g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
...++|+.+....+.. ...+++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .+..+.|+|.
T Consensus 25 ~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 103 (129)
T 2dmz_A 25 DGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLV 103 (129)
T ss_dssp TTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEE
T ss_pred CCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 4568899987532210 12478999999999999999 99999999999999999877888888877 7889999998
Q ss_pred cCCC
Q 012084 254 HGNC 257 (471)
Q Consensus 254 r~~~ 257 (471)
|++.
T Consensus 104 R~~~ 107 (129)
T 2dmz_A 104 RRKT 107 (129)
T ss_dssp EESS
T ss_pred eCCc
Confidence 8664
No 56
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.94 E-value=1e-09 Score=91.91 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=60.3
Q ss_pred cceeeeEEEEEeeCCC----------CceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcE
Q 012084 178 DMSGIGINLREVPDAN----------GVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETF 247 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~----------g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~ 247 (471)
...|+|+.+....+.. ...+++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +..
T Consensus 17 ~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~ 95 (109)
T 1q3o_A 17 DSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQG-GNT 95 (109)
T ss_dssp TTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTE
T ss_pred CCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCE
Confidence 3568999987522100 00148999999999999999999999999999999999777887777654 678
Q ss_pred EEEEEEcC
Q 012084 248 VTIEVKHG 255 (471)
Q Consensus 248 v~l~v~r~ 255 (471)
+.|+|.|.
T Consensus 96 v~l~v~~~ 103 (109)
T 1q3o_A 96 LMVKVVMV 103 (109)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEC
Confidence 88888764
No 57
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.94 E-value=9.6e-10 Score=90.84 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=61.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..|+|+.+....+ ..+++|..|.++|||+++||++||+|++|||+++.++...++..+++. .|+.+.|+|.|.+.
T Consensus 16 ~~g~G~~l~~~~~---~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 16 SNGYGFYLRAGPE---QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSSCEEEECSS---SSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCCccEEEEeecC---CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 4578998875221 136899999999999999999999999999999999876777777765 47899999977653
No 58
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=1e-09 Score=94.24 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=64.3
Q ss_pred ccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..+.++|+.+....+.....+++|..|.++|||+++| |++||+|++|||+++..+ .++..+++...|..+.|+|.|+
T Consensus 29 ~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~ 106 (124)
T 1wh1_A 29 NSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIARP 106 (124)
T ss_dssp STTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH--HHHHHHHTCSSCCSCCEEEEEC
T ss_pred CCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCEEEEEEEEC
Confidence 4456899998764321112368999999999999999 999999999999999864 6788888877789999999987
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 107 g~ 108 (124)
T 1wh1_A 107 EL 108 (124)
T ss_dssp SS
T ss_pred CE
Confidence 63
No 59
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.94 E-value=2.8e-09 Score=99.13 Aligned_cols=107 Identities=14% Similarity=0.194 Sum_probs=76.6
Q ss_pred cCCCceeecChHHhhhh-hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCC--CCH
Q 012084 158 LGDPYTRFLSPAEFSKM-ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRG--KSA 233 (471)
Q Consensus 158 L~D~Ht~~l~~~~~~~~-~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~--~~~ 233 (471)
..|||+.++.+.+.... ......++|+.+..-.+.....+++|..|.++|||+++| |++||+|++|||+++.+ ++.
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~ 85 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTT 85 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCH
T ss_pred CCCCCcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCH
Confidence 45999999888753321 123457899988642111111258999999999999998 99999999999999999 666
Q ss_pred HHHHHhhCCCCCcEEEEEEEcCCCCCeeEEE
Q 012084 234 FEVSSLLQGPSETFVTIEVKHGNCGPIESIQ 264 (471)
Q Consensus 234 ~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~ 264 (471)
.++..+++...+..++|+|.|.+.....+++
T Consensus 86 ~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~ 116 (206)
T 3r0h_A 86 LKVHQLFHTTYEKAVTLTVFRADPPELEKFN 116 (206)
T ss_dssp HHHHHHHHSCCSSEEEEEEECCSSCCEEEEE
T ss_pred HHHHHHHHhcCCCceEEEEEecccCCCcEEE
Confidence 7777777766566699999987654433333
No 60
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.93 E-value=3e-09 Score=86.64 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=57.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
.++|+.+.... .++..+++|..|.++|||++|||++||+|++|||+++.+++..++..++. +..++|+|+.
T Consensus 20 ~~~Gf~v~~~~-~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~~ 90 (94)
T 3kzd_A 20 DTYGFSLSSVE-EDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVRT 90 (94)
T ss_dssp -CCSEEEEEEC-SSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEEE
T ss_pred CCcCEEEEecC-CCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEEe
Confidence 47888887653 23334799999999999999999999999999999999988788888775 3467777753
No 61
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=87.43 Aligned_cols=74 Identities=32% Similarity=0.421 Sum_probs=59.8
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+.... +..+++|..|.++|||+++| |++||+|++|||+++.+....++..+++. .+..++|+|.|.+
T Consensus 15 ~~~lG~~~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 15 GKGLGLSIVGKR---NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp TSCCSEEEECCS---SSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CCcccEEEEecc---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 457899886522 12368999999999999999 99999999999999998776777666654 4678999998864
No 62
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.93 E-value=2.5e-09 Score=86.78 Aligned_cols=73 Identities=23% Similarity=0.427 Sum_probs=60.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+.. .+....++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++...+ .++|+|.+..
T Consensus 15 ~~lG~~i~~---~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 15 EPLGATIKK---DEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp SCCCEEEEE---CTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CCccEEEEe---cCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 488998875 2112368999999999999999 99999999999999988888888888876655 8899887653
No 63
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.93 E-value=7.8e-10 Score=91.64 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=62.4
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC-CcEEEEEEEcC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~-g~~v~l~v~r~ 255 (471)
...|+|+.+..-.+. ...++|..|.++|||+++| |++||+|++|||+++..++..++..+++... |+.|+|+|.|+
T Consensus 18 ~~~g~G~~i~~g~~~--~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 95 (103)
T 1uep_A 18 MESGFGFRILGGDEP--GQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95 (103)
T ss_dssp SSSSCCEEECCCCST--TSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCccCEEEeeecCC--CCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeC
Confidence 456899988541111 1358899999999999999 9999999999999999887788888886543 78999999886
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 96 ~ 96 (103)
T 1uep_A 96 V 96 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.92 E-value=2.8e-09 Score=89.11 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=63.3
Q ss_pred eeeeEEEEEeeC--CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPD--ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d--~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.|+||.+..-.+ ..+...++|..|.++|||+++| |++||+|++|||+++..++..++..+++...+..++|+|.|+.
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~ 105 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 589998865322 1123578999999999999999 9999999999999999888888888888766678999998853
No 65
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=98.92 E-value=1.6e-09 Score=90.43 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=64.3
Q ss_pred cccceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEE
Q 012084 176 RYDMSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (471)
Q Consensus 176 ~~~~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~ 251 (471)
+....++|+.+....+. +...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|..+.|+
T Consensus 21 ~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~ 99 (108)
T 2jre_A 21 EKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRN-AGNPVRLL 99 (108)
T ss_dssp CSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHH-HCSEEEEE
T ss_pred cCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence 35567899998642111 012368999999999999999 99999999999999999877788777765 67899999
Q ss_pred EEcCC
Q 012084 252 VKHGN 256 (471)
Q Consensus 252 v~r~~ 256 (471)
|.|++
T Consensus 100 v~R~~ 104 (108)
T 2jre_A 100 LIRRL 104 (108)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98865
No 66
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.92 E-value=3.7e-09 Score=87.07 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=61.1
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~---g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.|+|+.+..-.+.. +..+++|..|.++|||+++| |++||+|++|||+++.++...++..+++. .|+.+.|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 68999987521110 12368999999999999999 99999999999999999877777777765 378899999876
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 97 ~ 97 (101)
T 2jik_A 97 L 97 (101)
T ss_dssp S
T ss_pred C
Confidence 5
No 67
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.92 E-value=2.8e-09 Score=86.12 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=58.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+.. .. .++|..|.++|||+++||++||+|++|||+++.+++..++..+++. .+..+.|+|.|++
T Consensus 13 ~~g~G~~l~~---~~---~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 83 (91)
T 2f5y_A 13 KDGFGFTICC---DS---PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMV 83 (91)
T ss_dssp TTBTSEEEEC---SS---SCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC
T ss_pred CCCccEEEec---CC---CEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 3578887753 22 4789999999999999999999999999999999877787777765 3567999998865
No 68
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.92 E-value=2e-09 Score=87.67 Aligned_cols=79 Identities=16% Similarity=0.320 Sum_probs=62.5
Q ss_pred ccceeeeEEEEEeeCC--CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 177 YDMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~--~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
....++|+.+....+. ....+++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .+..+.|+|.
T Consensus 12 ~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 90 (97)
T 2iwn_A 12 KNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLM 90 (97)
T ss_dssp CBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEE
T ss_pred cCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 3456899998753110 012368899999999999999 99999999999999999877777777766 7889999998
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|++
T Consensus 91 r~g 93 (97)
T 2iwn_A 91 RRG 93 (97)
T ss_dssp EEE
T ss_pred eCC
Confidence 754
No 69
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.92 E-value=2e-09 Score=85.60 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=58.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+. ...++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..+.|+|.|++
T Consensus 11 ~~~G~~l~gg~~~--~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKDF--NMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGGG--TSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred CccCEEEEeccCC--CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 4678887531111 1257899999999999999999999999999999998777777777654 456999998864
No 70
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.91 E-value=5.8e-09 Score=88.48 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=62.7
Q ss_pred eeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.++||.+..-.+. ++...++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .+..++|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 5788888643221 122368999999999999999 99999999999999999887888888876 678899999987
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 109 ~ 109 (117)
T 1ujd_A 109 L 109 (117)
T ss_dssp C
T ss_pred C
Confidence 5
No 71
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.91 E-value=1.8e-09 Score=87.78 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=58.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+.... +..+++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +..+.+.+.|.+
T Consensus 15 ~~~~G~~l~~~~---~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~~~~~~~r~~ 88 (95)
T 3r68_A 15 SNGYGFYLRAGP---EQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKG-GDQTTLLVLDKE 88 (95)
T ss_dssp TTBCSCEEEEC-----CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEECC
T ss_pred CCcccEEEEecC---CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEECCc
Confidence 357888886522 11268899999999999999999999999999999999878888888774 556666665543
No 72
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.91 E-value=1.2e-09 Score=88.88 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=61.0
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++..++..++..+++... +.+.|+|.|++.
T Consensus 16 ~~lG~~l~~g~~--~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~ 90 (94)
T 1vb7_A 16 APWGFRISGGRD--FHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSG 90 (94)
T ss_dssp SCCSBCCEEETT--TTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCC
T ss_pred CCccEEEecccC--CCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCc
Confidence 467887754221 224689999999999999999999999999999999987778888887654 789999998763
No 73
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.91 E-value=2.4e-09 Score=88.82 Aligned_cols=74 Identities=27% Similarity=0.405 Sum_probs=60.7
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+....+ ...+++|..|.++|||+++||++||+|++|||+++..++..++..+++. ++.+.|+|+|+.
T Consensus 26 ~~~lG~~~~~~~~--~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~ 99 (104)
T 1wi2_A 26 GAQLGFNIRGGKA--SQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFS 99 (104)
T ss_dssp TCCCSEEEECCSS--SCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred CCCccEEEEcccC--CCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence 3578888865221 1136899999999999999999999999999999999777888888865 678999998864
No 74
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.91 E-value=5e-09 Score=87.02 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=61.8
Q ss_pred eeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++.. +..+.|+|.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT-SDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC-CSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 5889988742211 112368999999999999999 999999999999999988777777777654 78999999987
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 93 ~~ 94 (105)
T 2awx_A 93 TS 94 (105)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 75
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.91 E-value=4.7e-09 Score=85.67 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=59.2
Q ss_pred ceeeeEEEEEee-----CCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 179 MSGIGINLREVP-----DANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~-----d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..++||.+.... ..+....++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +..++|+|.
T Consensus 15 ~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~ 93 (96)
T 2ego_A 15 NQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETL 93 (96)
T ss_dssp TCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEE
T ss_pred CCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEE
Confidence 357888876421 11112468999999999999999999999999999999998778888888665 458898887
Q ss_pred cC
Q 012084 254 HG 255 (471)
Q Consensus 254 r~ 255 (471)
++
T Consensus 94 ~~ 95 (96)
T 2ego_A 94 YG 95 (96)
T ss_dssp CC
T ss_pred EC
Confidence 64
No 76
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.90 E-value=3.3e-09 Score=90.86 Aligned_cols=76 Identities=28% Similarity=0.359 Sum_probs=63.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~~ 256 (471)
..|+|+.+..-. +...+++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. .|+.++|+|.|++
T Consensus 29 ~~glG~~~~~g~--~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 106 (123)
T 1ueq_A 29 NMGFGFTIIGGD--EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGY 106 (123)
T ss_dssp TTSCSEEEECCS--SSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred CCceeEEEeccc--CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 458999886421 112358999999999999999 999999999999999988778888888765 4899999998865
No 77
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.90 E-value=5.1e-09 Score=84.90 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=59.7
Q ss_pred eeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..++|+|.|+
T Consensus 14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~ 92 (94)
T 2fe5_A 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKP 92 (94)
T ss_dssp TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECC
T ss_pred CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEcC
Confidence 5788888641110 112368999999999999999 999999999999999998777777777654 45899999886
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 93 g 93 (94)
T 2fe5_A 93 G 93 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.90 E-value=3.1e-09 Score=87.73 Aligned_cols=78 Identities=24% Similarity=0.255 Sum_probs=62.0
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .|..+.|+|.|
T Consensus 14 ~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 92 (102)
T 2i1n_A 14 NSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRR 92 (102)
T ss_dssp TTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 45789988642110 012378999999999999999 99999999999999998877777777765 57899999988
Q ss_pred CCC
Q 012084 255 GNC 257 (471)
Q Consensus 255 ~~~ 257 (471)
++.
T Consensus 93 ~~~ 95 (102)
T 2i1n_A 93 RQP 95 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 79
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.90 E-value=3.4e-09 Score=88.90 Aligned_cols=71 Identities=27% Similarity=0.273 Sum_probs=59.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+.. . ..++|..|.++|||++|||++||+|++|||+++..++..++.++++...++.++|+|.|..
T Consensus 34 ~~~G~~l~~---~---~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRG---N---APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEES---S---SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeC---C---CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 578887743 1 2468999999999999999999999999999999887788888887776777999998754
No 80
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.90 E-value=1.6e-09 Score=93.36 Aligned_cols=74 Identities=28% Similarity=0.394 Sum_probs=62.7
Q ss_pred ccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEc
Q 012084 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKH 254 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r 254 (471)
..+.|+|+.+.. .+ ..++|..|.++|||++|| |++||+|++|||+++.+.+..++..+++. +.|+.|+|+|.|
T Consensus 35 k~~~glG~~i~~---~~--~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R 109 (126)
T 1wif_A 35 VGNLGLGLVVIQ---NG--PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109 (126)
T ss_dssp CCTTCCCCCEEE---ET--TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEES
T ss_pred cCCceEeEEEEc---CC--CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEE
Confidence 345688887754 12 268899999999999999 99999999999999987777888889987 679999999988
Q ss_pred C
Q 012084 255 G 255 (471)
Q Consensus 255 ~ 255 (471)
+
T Consensus 110 ~ 110 (126)
T 1wif_A 110 G 110 (126)
T ss_dssp S
T ss_pred C
Confidence 6
No 81
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.90 E-value=9.5e-10 Score=95.22 Aligned_cols=78 Identities=22% Similarity=0.423 Sum_probs=64.7
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+||.+..-.+. .+...++|..|.++|||+++ ||++||+|++|||+++..++.+++..++++..+..+.|+|+|..
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 56899998642210 01235899999999999999 89999999999999999998889999998888888999998754
No 82
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=98.90 E-value=1.9e-09 Score=116.13 Aligned_cols=149 Identities=14% Similarity=0.148 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCChhhHHHHHHHHhhccccChHHHHHHHHHHHHhcCC-CceeecChHHhhhh-----
Q 012084 101 NEGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSSSIQTRSKAHGIIKRMLASLGD-PYTRFLSPAEFSKM----- 174 (471)
Q Consensus 101 ~~~~f~~vw~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~~~~~~~~~~~~i~~ml~~L~D-~Ht~~l~~~~~~~~----- 174 (471)
+.+.|+++++.+.+.|... ..+++..||.+..+++.... +...++.++..-+. ++..++....++..
T Consensus 397 g~~sldd~mr~l~~~~~~~-~~~~t~~d~~~~~e~~sG~d------l~~ff~~~l~~t~~~p~~~~l~~~G~~l~~~~~~ 469 (597)
T 4fgm_A 397 HKLTLARVMKELWHEFGKT-SIGTADDTVINWLNQYPGID------ISDFLKDALYNKESLSLVELLQNFGVMVQKQVPV 469 (597)
T ss_dssp TSCCHHHHHHHHHHHHTTT-TCCBCTTHHHHHHHTSTTCC------CHHHHHHHHHSCSCCCCHHHHHTTTEEEEEECCS
T ss_pred CchHHHHHHHHHHHHhCcC-CCCCCHHHHHHHHHHhcCcC------HHHHHHHHHhCCCCcchhHHHhhcceEEEeccCC
Confidence 3457899999888887642 34688889988888876532 33445566655433 23222222211110
Q ss_pred ----------hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-C
Q 012084 175 ----------ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-P 243 (471)
Q Consensus 175 ----------~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~ 243 (471)
......++|+.+.. +++ +++|..|.++|||++|||++||+|++|||++|. . .++...+.. +
T Consensus 470 ~~~~~~~~~~~~~~~~~lG~~~~~---~~~--gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~-~--~~l~~~l~~~~ 541 (597)
T 4fgm_A 470 DDNSVGGKASEQPARVNFGAKYKA---SPQ--GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQAT-E--QSVKRILERYI 541 (597)
T ss_dssp STTCCCSCCCSCCCSCCCSEEEEE---ETT--EEEEEEECTTSHHHHHTCCTTCEEEEETTEECC-T--TTHHHHHTTCC
T ss_pred ccccccccccccCCccccceEEec---cCC--eEEEEEeCCCChHHHCCCCCCCEEEEECCEECC-H--HHHHHHHHhcC
Confidence 01123578888765 222 689999999999999999999999999999995 2 345556654 6
Q ss_pred CCcEEEEEEEcCCCCCeeEEEEe
Q 012084 244 SETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 244 ~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
+|++|+|+|.|++. ..+++++
T Consensus 542 ~g~~v~l~v~R~g~--~~~~~v~ 562 (597)
T 4fgm_A 542 PGDTVTIHAFRRDE--LMTLELT 562 (597)
T ss_dssp TTCEEEEEEEETTE--EEEEEEE
T ss_pred CCCEEEEEEEECCE--EEEEEEE
Confidence 79999999999764 3444443
No 83
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.90 E-value=2.6e-09 Score=90.44 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=61.7
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcC-CCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVR-GKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~-~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++|+.+....+. .+..+++|..|.++|||+++| |++||+|++|||+++. +++..++..+++. .|..+.|+|.|+
T Consensus 31 ~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~ 109 (117)
T 2o2t_A 31 SGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARG 109 (117)
T ss_dssp SSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESS
T ss_pred CCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence 35677777543221 122478999999999999999 9999999999999998 7777788777765 578999999987
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 110 ~~ 111 (117)
T 2o2t_A 110 SL 111 (117)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 84
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.90 E-value=1.1e-09 Score=91.19 Aligned_cols=59 Identities=32% Similarity=0.385 Sum_probs=52.5
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
+++|..|.++|||+++||++||+|++|||+++.++...++..+++ ..|+.++|+|.|++
T Consensus 27 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 85 (106)
T 3ngh_A 27 GHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGD 85 (106)
T ss_dssp SCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHH
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECC
Confidence 578999999999999999999999999999999987777777776 56889999998864
No 85
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.90 E-value=2.6e-09 Score=87.71 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=58.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
-.++|+.+... .+ .+++|..|.++|||+++| |++||+|++|||+++.+++.+++.+++++. +..++|+|.+.
T Consensus 23 ~~~lG~~l~~~--~~--~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 23 EEPMGICLKLN--EK--QSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SSCCSEEEEEC--TT--CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCCeeEEEEeC--CC--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 35788888641 12 268999999999999999 999999999999999986668888888764 56888888754
No 86
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.90 E-value=4.3e-09 Score=86.03 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=59.0
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
...|+|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.++...++..++++. +..+.|+|.|..
T Consensus 18 ~~~glG~~~~~--~~---~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 91 (96)
T 2qkv_A 18 AGKELGLSLSP--NE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA-NGKVSMEVTRPK 91 (96)
T ss_dssp TTBCCCEEEEE--CS---SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECCC
T ss_pred CCCCccEEEEe--CC---CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCcEEEEEEeCC
Confidence 45688988764 11 258999999999999999 999999999999999987767776667654 457999998853
No 87
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.90 E-value=7.4e-09 Score=86.06 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=62.5
Q ss_pred ceeeeEEEEEeeC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+..-.+ .....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .++.+.|+|.|++
T Consensus 20 ~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 98 (106)
T 3axa_A 20 QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQG 98 (106)
T ss_dssp SSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred CCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 3578888854211 1122479999999999999999 99999999999999998877777777765 6889999999876
Q ss_pred C
Q 012084 257 C 257 (471)
Q Consensus 257 ~ 257 (471)
.
T Consensus 99 ~ 99 (106)
T 3axa_A 99 A 99 (106)
T ss_dssp S
T ss_pred c
Confidence 3
No 88
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.89 E-value=6e-09 Score=84.10 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=50.7
Q ss_pred EEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... ..+.|+|.|++.
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~ 84 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDER 84 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTT-TEEEEEEEC---
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEeCCc
Confidence 68999999999999999 9999999999999999777778888887644 489999998763
No 89
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.89 E-value=3.3e-09 Score=86.69 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=52.3
Q ss_pred EEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcCCCCCeeEEEE
Q 012084 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNCGPIESIQV 265 (471)
Q Consensus 198 ~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~~~~~~~~v~l 265 (471)
.+|..|.++|||++|||++||+|++|||+++..+ .++...+... .++.+.|+|.|++.+..+++++
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l 70 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKL 70 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEE
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEE
Confidence 3688999999999999999999999999999986 5666655433 3478999999987544444444
No 90
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.89 E-value=2.4e-09 Score=92.18 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=64.7
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
...|+|+.+.... +..+++|..|.++|||+++||++||+|++|||+++.+++..++..+++...++.+.|+|.|++.
T Consensus 18 ~~~g~G~~l~~~~---~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 18 GPSGYGFNLHSDK---SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp CSSSCCEEEEECS---SSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCCcccEEEEecC---CCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 3468999987622 2236899999999999999999999999999999999777888888887788889999988653
No 91
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=2.7e-09 Score=88.67 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=62.8
Q ss_pred ceeeeEEEEEeeCC----CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 179 MSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~d~----~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..|+||.+..-.+. .+...++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..+.|+|.
T Consensus 17 ~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~ 95 (105)
T 1wha_A 17 ERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLE 95 (105)
T ss_dssp TTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEE
T ss_pred CCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEE
Confidence 34788888642110 112368999999999999999 999999999999999998778888888765 788999998
Q ss_pred cCCCC
Q 012084 254 HGNCG 258 (471)
Q Consensus 254 r~~~~ 258 (471)
|++++
T Consensus 96 R~~~~ 100 (105)
T 1wha_A 96 REAGS 100 (105)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 87543
No 92
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.89 E-value=1.3e-09 Score=90.34 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=59.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+..-. +....++|..|.++|||++|||++||+|++|||+++.++...++..+++.. +..+.|+|.|++.
T Consensus 15 ~~~G~~l~gg~--~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 89 (103)
T 1wf7_A 15 APWGFRLQGGK--DFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC-TGSLNMTLQRASA 89 (103)
T ss_dssp SCCSCCEEEET--TTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHC-SSEEEEEECCCSC
T ss_pred CccCEEEeccc--cCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 46787775421 112358899999999999999999999999999999998766666666543 7789999988764
No 93
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.88 E-value=3.7e-09 Score=87.26 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=60.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~ 255 (471)
.++|+.+......+....++|..|.++|||++ +||++||+|++|||+++.+.+..++.+++++. .|+.++|+|.|.
T Consensus 21 ~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 58999986411111112489999999999999 56999999999999999877778888888764 788999999774
No 94
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.88 E-value=4.7e-09 Score=85.52 Aligned_cols=76 Identities=28% Similarity=0.443 Sum_probs=60.7
Q ss_pred eeeeEEEEEeeC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-.+ .....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|..+.|+|.|++
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 93 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQ 93 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 578888863111 0011368999999999999999 99999999999999998877788777765 5789999998865
No 95
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.88 E-value=4.5e-09 Score=91.10 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=62.6
Q ss_pred ceeeeEEEEE-eeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012084 179 MSGIGINLRE-VPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~-~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~ 255 (471)
..++||.+.. .....+...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. .+..|+|+|.|+
T Consensus 47 ~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 126 (131)
T 1wfg_A 47 GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126 (131)
T ss_dssp CTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEE
T ss_pred CCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcC
Confidence 3467888743 1112233478999999999999999 999999999999999988778888888654 678999999886
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 127 g 127 (131)
T 1wfg_A 127 G 127 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=4.7e-09 Score=89.15 Aligned_cols=76 Identities=25% Similarity=0.442 Sum_probs=60.8
Q ss_pred eeeeEEEEEeeC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.|+|+.+..-.+ ..+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...+ +++|+|.|++
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~g 113 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG-TVTLMVLSSD 113 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-SEEEEEEECS
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEeCC
Confidence 588998864221 1122468999999999999999 99999999999999998877888877765444 5999998875
No 97
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.88 E-value=3.1e-09 Score=87.61 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=60.1
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
...++|+.+....+ ...+++|..|.++|||+++||++||+|++|||+++..+...++...++ .+..+.|+|.|++.
T Consensus 19 ~~~~lG~~~~~~~~--~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g~ 94 (101)
T 1uez_A 19 AHEGLGFSIRGGSE--HGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSAGR 94 (101)
T ss_dssp TTTCSSEEEEECTT--TTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCCCC
T ss_pred CCCcccEEEeCCCC--CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEECCc
Confidence 45689999876322 123689999999999999999999999999999999987666655554 34578899988653
No 98
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.88 E-value=5.2e-09 Score=84.26 Aligned_cols=73 Identities=23% Similarity=0.337 Sum_probs=58.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..++|+.+..-.+ ....++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++.. +..++|+|.|
T Consensus 15 ~~~lG~~i~~~~~--~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~r 88 (90)
T 1qav_A 15 AGGLGISIKGGRE--NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY 88 (90)
T ss_dssp TTCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred CCCcCEEEEcccC--CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 4578888864211 1246899999999999999 9999999999999999988777777777654 6778888875
No 99
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.88 E-value=1.5e-09 Score=89.95 Aligned_cols=75 Identities=13% Similarity=0.203 Sum_probs=61.8
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+..-. +....++|..|.++|||+++||++||+|++|||+++..++..++..+++.. ++.++|+|.|++.
T Consensus 15 ~~lG~~l~~g~--~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 15 APWGFRLSGGI--DFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET 89 (103)
T ss_dssp SCCSBCCEEET--TTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred CCcCEEEeccc--cCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence 46777765421 112368899999999999999999999999999999997778888888876 8999999998764
No 100
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.7e-09 Score=87.96 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=58.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..-. +....++|..|.++|||+++||++||+|++|||+++..+...++..+++. .++.+.|+|.|++
T Consensus 18 ~~~G~~l~gg~--~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 91 (94)
T 2eeg_A 18 SPWGFRLVGGR--DFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGP 91 (94)
T ss_dssp SCCSCCEECCT--TTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred CccCEEEECcc--CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 46788775311 11135789999999999999999999999999999999876677666765 5778999998865
No 101
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=86.00 Aligned_cols=75 Identities=28% Similarity=0.467 Sum_probs=59.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC-CcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~-g~~v~l~v~r~ 255 (471)
..|+|+.+..-.+. + ..++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++... +..++|+|.|.
T Consensus 12 ~~g~G~~~~~g~~~-~-~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 12 ETGFGFRILGGNEP-G-EPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TTBCCEEEEECSST-T-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CCccCEEEEccccC-C-CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 35789988642111 1 258999999999999999 9999999999999998877778777776432 45889998774
No 102
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.87 E-value=5.1e-09 Score=86.57 Aligned_cols=73 Identities=30% Similarity=0.446 Sum_probs=59.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.|+|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .+..+.|+|.|+.
T Consensus 22 ~glG~~~~~~~---~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 22 TGLGFNIVGGE---XGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TBTSEEEEECC----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CccCEEEECCC---CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 47898886522 11368999999999999999 99999999999999998877777666654 5678999998753
No 103
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=2.7e-10 Score=98.11 Aligned_cols=92 Identities=24% Similarity=0.338 Sum_probs=69.4
Q ss_pred CCceeecChHHhh-hh---hcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHH
Q 012084 160 DPYTRFLSPAEFS-KM---ARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFE 235 (471)
Q Consensus 160 D~Ht~~l~~~~~~-~~---~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~ 235 (471)
|+|+.|+++++++ .+ ..+.+.|.... .++ ....++|..|.++|||+++||++||+|++|||+++..++..+
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~--~~~---~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~ 100 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQRN--RLE---PMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQ 100 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC--CCC---CCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceeee--ccc---CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 8999999988764 22 22344441110 010 112578999999999999999999999999999999887888
Q ss_pred HHHhhCCCCCcEEEEEEEcCCC
Q 012084 236 VSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 236 ~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
+..+++.. |+.++|+|.|.+.
T Consensus 101 ~~~~l~~~-g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 101 VIALIQNS-DTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHTC-TTEEEEECCCCCC
T ss_pred HHHHHHcC-CCEEEEEEEECCC
Confidence 88888764 8999999988654
No 104
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.86 E-value=5.7e-09 Score=90.14 Aligned_cols=75 Identities=28% Similarity=0.433 Sum_probs=62.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC-CcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~-g~~v~l~v~r~~ 256 (471)
.|+|+.+..-.+ ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++... |+.++|+|.|+.
T Consensus 29 ~g~G~~i~g~~~--~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDE--PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEE--TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 478888865221 12368999999999999999 9999999999999999887788888887644 889999998865
No 105
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.86 E-value=8.7e-09 Score=80.84 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 197 TLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++...+ .+.|+|.|+
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~R~ 80 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKG-KLKMVVQRD 80 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT-EEEEEEEC-
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-eEEEEEEeC
Confidence 68999999999999999 99999999999999997777788888876544 888988875
No 106
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.86 E-value=4.3e-09 Score=89.32 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=62.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+....+. +...++|..|.++|||+++| |++||+|++|||+++.+++.+++..+++ ..++.++|+|.|.+.
T Consensus 27 ~~lG~~i~~~~~~-~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 27 SALGISLTTTSLR-NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp CCCCCEEEEECCS-SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CcccEEEEccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 5788888653221 11248999999999999999 9999999999999998888888888887 478999999988653
No 107
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.86 E-value=6.3e-09 Score=86.58 Aligned_cols=76 Identities=34% Similarity=0.524 Sum_probs=59.6
Q ss_pred eeeeEEEEEeeCCCC----------ceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEE
Q 012084 180 SGIGINLREVPDANG----------VVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (471)
Q Consensus 180 ~giG~~~~~~~d~~g----------~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~ 249 (471)
.|+|+.+....+.++ ...++|..|.++|||+++||++||+|++|||+++..++..++..+++ ..|..+.
T Consensus 17 ~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~ 95 (107)
T 3qe1_A 17 SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR-AGEKELI 95 (107)
T ss_dssp TBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HCSSEEE
T ss_pred CCCCEEEEcccccCCcceeccccccCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEE
Confidence 378988865211111 11246999999999999999999999999999999887788877776 3588999
Q ss_pred EEEEcCC
Q 012084 250 IEVKHGN 256 (471)
Q Consensus 250 l~v~r~~ 256 (471)
|+|.|.+
T Consensus 96 l~v~r~~ 102 (107)
T 3qe1_A 96 LTVLSVE 102 (107)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 9998865
No 108
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.86 E-value=9e-09 Score=92.64 Aligned_cols=83 Identities=23% Similarity=0.339 Sum_probs=64.5
Q ss_pred ccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
....++|+.+... + .+++|..|.++|||++|||++||+|++|||+++.++.......+++...|++++|++++++
T Consensus 13 ~~~~~lG~~~~~~---~--~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~ 87 (166)
T 1w9e_A 13 DQDGKIGLRLKSI---D--NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRP 87 (166)
T ss_dssp CTTSCCSEEEEEE---T--TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCT
T ss_pred CCCCcEeEEEEeC---C--CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 3456889888763 2 2789999999999999999999999999999999986534555666667889999996653
Q ss_pred CCCeeEEEEe
Q 012084 257 CGPIESIQVQ 266 (471)
Q Consensus 257 ~~~~~~v~l~ 266 (471)
+..++++.
T Consensus 88 --~~~~v~l~ 95 (166)
T 1w9e_A 88 --FERTITMH 95 (166)
T ss_dssp --TCEEEEEE
T ss_pred --CcEEEEEe
Confidence 33455554
No 109
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.85 E-value=6.5e-09 Score=87.60 Aligned_cols=72 Identities=28% Similarity=0.454 Sum_probs=60.1
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCC-CCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGV-RQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl-~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+... + .+++|..|.++|||+++|| ++||+|++|||+++.+++..++..+++... .++.|+|.|.++
T Consensus 37 ~~lG~~i~~~---~--~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~ 109 (113)
T 1va8_A 37 IPLGATVRNE---M--DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMH-GTLTFVLIPSSG 109 (113)
T ss_dssp CCCCEEEEEC---S--SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred CceeEEEEeC---C--CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence 3889988652 2 2689999999999999999 999999999999999887788888886544 579999988653
No 110
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=7e-09 Score=86.42 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=61.2
Q ss_pred ceeeeEEEEEe---eC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 179 MSGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~---~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..++|+.+..- .+ ..+..+++|..|.++|||+++| |++||+|++|||+++..++..++..+++. .++.++|+|.
T Consensus 19 ~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~ 97 (107)
T 1wf8_A 19 EDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIG 97 (107)
T ss_dssp TTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEE
T ss_pred CCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEE
Confidence 35788888651 11 0123579999999999999999 99999999999999998877777777764 4789999998
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|.+
T Consensus 98 R~~ 100 (107)
T 1wf8_A 98 REK 100 (107)
T ss_dssp EEC
T ss_pred eCC
Confidence 764
No 111
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.85 E-value=2.6e-09 Score=91.31 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=63.8
Q ss_pred ccceeeeEEEEEee--CCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC-CcEEEEEE
Q 012084 177 YDMSGIGINLREVP--DANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEV 252 (471)
Q Consensus 177 ~~~~giG~~~~~~~--d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~-g~~v~l~v 252 (471)
....++||.+..-. +++....++|..|.++|||+++| |++||+|++|||+++..++..++.++++... ++.++|+|
T Consensus 24 ~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v 103 (122)
T 1v5q_A 24 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp CSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 44678999987421 01112357899999999999999 9999999999999999877788888887644 88999999
Q ss_pred EcCC
Q 012084 253 KHGN 256 (471)
Q Consensus 253 ~r~~ 256 (471)
.|++
T Consensus 104 ~R~~ 107 (122)
T 1v5q_A 104 EFDV 107 (122)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8865
No 112
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.84 E-value=6.5e-09 Score=89.23 Aligned_cols=73 Identities=30% Similarity=0.420 Sum_probs=59.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~l~v~r~~ 256 (471)
.++|+.+..- .+ .+++|..|.++|||++|||++||+|++|||+++..++..++...+. ...|+.++|+|.|++
T Consensus 39 ~~lG~~l~~~--~~--~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 112 (124)
T 3tsv_A 39 DSVGLRLAGG--ND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112 (124)
T ss_dssp SCCCEEEEEC--TT--SCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred CceeEEEecC--CC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4688887541 11 3689999999999999999999999999999999987677766554 467899999998864
No 113
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.84 E-value=2.8e-09 Score=89.69 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=62.0
Q ss_pred ceeeeEEEEEee---C-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 179 MSGIGINLREVP---D-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~---d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..|+|+.+.... + ..+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. |+.++|+|.
T Consensus 14 ~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~-g~~v~l~v~ 92 (113)
T 2g5m_B 14 SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIG 92 (113)
T ss_dssp SSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHS-CSSCEEEEE
T ss_pred CCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CCeEEEEEE
Confidence 357888876520 1 0123479999999999999999 999999999999999988777776667654 788999998
Q ss_pred cCCCC
Q 012084 254 HGNCG 258 (471)
Q Consensus 254 r~~~~ 258 (471)
|++..
T Consensus 93 R~~~~ 97 (113)
T 2g5m_B 93 RERPG 97 (113)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 87643
No 114
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.84 E-value=2.2e-09 Score=88.99 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=64.0
Q ss_pred CCceeecChHHhhhhhcccceeeeEEEEEeeC-----CCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHH
Q 012084 160 DPYTRFLSPAEFSKMARYDMSGIGINLREVPD-----ANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAF 234 (471)
Q Consensus 160 D~Ht~~l~~~~~~~~~~~~~~giG~~~~~~~d-----~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~ 234 (471)
|+|+.+.+.... +.+....++|+.+..... .+....++|..|.++|||+++||++||+|++|||+++..++..
T Consensus 9 ~p~s~~~~~~v~--l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~ 86 (104)
T 2z17_A 9 SDFSWSQRKLVT--VEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYK 86 (104)
T ss_dssp --CCCSCCCEEE--EECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHH
T ss_pred ccCCCCcceEEE--EEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHH
Confidence 788877654422 222233467888875311 0112368999999999999999999999999999999987778
Q ss_pred HHHHhhCCCCCcEEEEEE
Q 012084 235 EVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 235 ~~~~ll~g~~g~~v~l~v 252 (471)
++..+++...+ .++|+|
T Consensus 87 ~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 87 QVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp HHHHHHHHTTT-EEEEEC
T ss_pred HHHHHHHhCCC-cEEEEE
Confidence 88888876644 777764
No 115
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=3.2e-09 Score=85.87 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=54.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..++|+.+. .| +|..|.++|||+++||++||+|++|||+++.+.+..++.++++. .|+.+.|+|.+
T Consensus 23 ~~~lG~~~~-----~G----~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~p 88 (90)
T 1y7n_A 23 RYQLGFSVQ-----NG----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSN-AVGEIHMKTMP 88 (90)
T ss_dssp TSCCCEEEE-----TT----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHH-CCEEEEEEEEC
T ss_pred ccccCeEec-----CC----EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 456787663 12 78999999999999999999999999999987777888888863 47888888875
No 116
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.83 E-value=8e-09 Score=85.94 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=58.9
Q ss_pred ceeeeEEEEEeeCC----CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~----~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..|+|+.+..-.+. .+..+++|..|.++|||+ +||++||+|++|||+++.++........+. ..|+.++|+|.|
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 95 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRR 95 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEE
Confidence 46899998642211 012378999999999999 999999999999999999986554443343 567899999988
Q ss_pred CCC
Q 012084 255 GNC 257 (471)
Q Consensus 255 ~~~ 257 (471)
++.
T Consensus 96 ~~~ 98 (107)
T 2h2b_A 96 KKG 98 (107)
T ss_dssp ESC
T ss_pred CCC
Confidence 664
No 117
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=1.3e-08 Score=83.24 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=60.7
Q ss_pred ccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcC
Q 012084 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHG 255 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~ 255 (471)
....|+|+.+... . .+++|..|.+ +|+++||++||+|++|||+++.+++..++.+++++. .|+.+.|+|.|+
T Consensus 18 ~~~~g~G~~i~~~---~--~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 90 (96)
T 1ujv_A 18 KGAQGFGFTIADS---P--TGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG 90 (96)
T ss_dssp CCSSSSSEEEEEE---T--TEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred eCCCceeEEEEcC---C--CCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence 3457899998642 1 2588999988 478899999999999999999998778888888875 489999999987
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 91 g~ 92 (96)
T 1ujv_A 91 SG 92 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 118
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.82 E-value=4.5e-09 Score=86.32 Aligned_cols=70 Identities=23% Similarity=0.231 Sum_probs=56.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC--CCCcEEEEEEE
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG--PSETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g--~~g~~v~l~v~ 253 (471)
..|+|+.+.. .++ ..+|..|.++|||++|||++||+|++|||+++...+.+++...++. +.|..+.|.|.
T Consensus 27 ~~g~G~~l~~---~~~--~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 27 EEDYGFDIEE---KNK--AVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp SSSSSEEEEE---ETT--EEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCcccEEEEc---cCC--CeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 4578888865 222 6789999999999999999999999999999975555778777765 46788888775
No 119
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=5.9e-09 Score=84.37 Aligned_cols=75 Identities=28% Similarity=0.475 Sum_probs=59.4
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+..-.+. ...++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..++|+|.|+.
T Consensus 15 ~~glG~~l~~~~~~--~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~ 90 (93)
T 2dkr_A 15 DEGLGFNIMGGKEQ--NSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRSGP 90 (93)
T ss_dssp TTCCCEEEECSSSS--SCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred CCCccEEEecccCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence 46889988642111 1368999999999999996 999999999999999988777777777644 457999998754
No 120
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.82 E-value=7.4e-09 Score=86.36 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=57.8
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.+....++..++++. +.++.|+|.|..
T Consensus 13 ~~glG~~i~~--~~---~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 85 (106)
T 2la8_A 13 GKELGLSLSP--NE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA-NGKVSMEVTRPK 85 (106)
T ss_dssp SSTTCCEEEE--CS---SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSC-BSCEEEEEEECC
T ss_pred CCccCEEEEe--CC---CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence 4577887754 11 258999999999999999 999999999999999987777776677654 456999998753
No 121
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.81 E-value=9.8e-09 Score=82.01 Aligned_cols=73 Identities=29% Similarity=0.467 Sum_probs=57.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..++|+.+..-.+. + ..++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .+..++|+|++
T Consensus 13 ~~~lG~~i~~~~~~-~-~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~ 86 (87)
T 4e34_A 13 HEGLGISITGGKEH-G-VPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY 86 (87)
T ss_dssp TBCCCEEEEEEGGG-T-EEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CCcccEEEEccCCC-C-CCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 35788887642211 1 3689999999999999 7999999999999999998887787777763 45678887753
No 122
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=9.3e-09 Score=86.04 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=61.4
Q ss_pred ceeeeEEEEEeeCC-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDA-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++..++..++..+++.. +..+.|+|.|++
T Consensus 18 ~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~ 96 (110)
T 1um1_A 18 PSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD 96 (110)
T ss_dssp TTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred CCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence 35889988642111 112368999999999999999 999999999999999987777777777654 889999999875
No 123
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.81 E-value=1.1e-08 Score=82.33 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=55.4
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 181 giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
++|+.+.. +++|..|.++|||+++| |++||+|++|||+++.+++..++.+++++.. .+++|++.+.
T Consensus 14 ~~G~~~~~--------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~-~~v~L~v~~~ 80 (88)
T 3e17_A 14 EYGLRLGS--------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRD 80 (88)
T ss_dssp CCCEEEEE--------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTT-TEEEEEECCC
T ss_pred CCCEEEeC--------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEeCC
Confidence 45666543 68999999999999999 9999999999999998888888888887654 4788888654
No 124
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=84.66 Aligned_cols=69 Identities=26% Similarity=0.435 Sum_probs=56.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.|+|+.+.. . .+++|..|.++|||+++||++||+|++|||+++.+++..++..+++.. +..++|+|.|+
T Consensus 13 ~g~G~~~~~---~---~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG---Q---APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKC-SGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC---S---SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred CcccEEEEc---C---CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence 577876642 1 257899999999999999999999999999999998877888888654 46699999875
No 125
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=1e-08 Score=82.99 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=58.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++|+.+.. .+ ..++|..|.++|||+++| |++||+|++|||+++ ..+..++.++++.. +.++.|+|.|.
T Consensus 17 ~~~lG~~i~~---~~--~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~-~~~v~l~v~~~ 87 (91)
T 2e7k_A 17 GEHLGVTFRV---EG--GELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNA-SGSVILKILSG 87 (91)
T ss_dssp TCCCCEEEEE---SS--SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred CCcEeEEEEe---cC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 4678998875 22 268999999999999987 999999999999999 66678888888764 66788888764
No 126
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.81 E-value=3.6e-09 Score=89.91 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=63.6
Q ss_pred ccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 177 YDMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
....++|+.+..-.+. ...+++|..|.++|||+++| |++||+|++|||+++..++..++..+++...+..+.+++.|+
T Consensus 24 ~~~~~lG~~i~g~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~ 102 (119)
T 1x6d_A 24 EEGAGLGFSLAGGADL-ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRK 102 (119)
T ss_dssp CTTSCCSEEEECCSSS-SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEEC
T ss_pred CCCCccCEEEeCCCCC-CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 3457899998642211 11358999999999999999 999999999999999988778888888776677777888876
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 103 ~~ 104 (119)
T 1x6d_A 103 LT 104 (119)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 127
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.80 E-value=1.2e-08 Score=84.90 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=58.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC--CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC---CcEEEEEEE
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG--VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG--l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~---g~~v~l~v~ 253 (471)
..++|+.+..-.+ ....++|..|.++|||+++| |++||+|++|||+++..+...++..+++... +..+.|+|+
T Consensus 28 ~~~~G~~~~gg~~--~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~ 105 (107)
T 3nfk_A 28 NGRFGFNVKGGYD--QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105 (107)
T ss_dssp TSCCCEEEEEEGG--GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEE
T ss_pred CCCCCEEEEccCC--CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEE
Confidence 3578888754221 11368999999999999999 9999999999999999988778777776543 358888887
Q ss_pred c
Q 012084 254 H 254 (471)
Q Consensus 254 r 254 (471)
|
T Consensus 106 r 106 (107)
T 3nfk_A 106 P 106 (107)
T ss_dssp C
T ss_pred c
Confidence 6
No 128
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.80 E-value=9.8e-09 Score=84.59 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=49.7
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~ 257 (471)
+++|..|.++|||++ ||++||+|++|||+++..+ .++...+.. ..|+.+.|+|.|++.
T Consensus 8 Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~ 66 (100)
T 3i18_A 8 GVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDK 66 (100)
T ss_dssp CEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred CEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 688999999999995 9999999999999999986 566666654 578999999999763
No 129
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=8.9e-09 Score=87.08 Aligned_cols=72 Identities=22% Similarity=0.333 Sum_probs=58.0
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 181 GIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 181 giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
++|+.+....+ ++..+++|..|.++|||++|||++||+|++|||+++..+...++..++++ ..+.|+|+|..
T Consensus 30 ~~G~~v~~~~~-~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 30 TYGFSLSSVEE-DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp CCCCEEEEEEE-TTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred ccCEEEEecCc-CCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 57777765432 23247899999999999999999999999999999998866778888875 37888888754
No 130
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.79 E-value=5.9e-09 Score=87.43 Aligned_cols=74 Identities=23% Similarity=0.398 Sum_probs=60.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..++|+.+... .+ .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|..+.|+|.|++.
T Consensus 25 ~~~lG~~l~~~--~~--~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 25 GSGLGFGIVGG--KT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SSCCCEEEECC--SS--SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CCccCEEEecc--CC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 35788888641 11 268999999999999999 99999999999999998877777777764 47889999988654
No 131
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.79 E-value=1.6e-09 Score=87.92 Aligned_cols=57 Identities=12% Similarity=0.299 Sum_probs=49.8
Q ss_pred EEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCC-CCcEEEEEEEcCCC
Q 012084 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGP-SETFVTIEVKHGNC 257 (471)
Q Consensus 198 ~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~-~g~~v~l~v~r~~~ 257 (471)
++|..|.++|||++ ||++||+|++|||+++.++ .++..++... +|++++|+|.|++.
T Consensus 3 v~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 60 (91)
T 2kjp_A 3 IYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEK 60 (91)
T ss_dssp SSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSC
T ss_pred eEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCE
Confidence 56788999999999 9999999999999999875 5777778765 79999999999764
No 132
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=1.2e-08 Score=87.79 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=61.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGP 259 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~ 259 (471)
.++|+.+.... +...+++|..|.++|||+++||++||+|++|||+++..+...++...++. +..+.|+|.|++...
T Consensus 32 ~~lG~~~~~~~--~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~~~ 107 (128)
T 1uf1_A 32 RSLGLTIRGGA--EYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS--SRHLILTVKDVGRLP 107 (128)
T ss_dssp CCCCEEEECCT--TTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT--CSEEEEEEECCSCCS
T ss_pred CccCEEEECcc--cCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEECCccc
Confidence 45787775421 11126889999999999999999999999999999999876677777754 468999999987544
Q ss_pred eeEEE
Q 012084 260 IESIQ 264 (471)
Q Consensus 260 ~~~v~ 264 (471)
..+++
T Consensus 108 ~~~v~ 112 (128)
T 1uf1_A 108 HARTT 112 (128)
T ss_dssp SCSCC
T ss_pred ccccc
Confidence 43333
No 133
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=8.2e-09 Score=87.06 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=62.3
Q ss_pred ceeeeEEEEEeeCC--CCce---EEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEE
Q 012084 179 MSGIGINLREVPDA--NGVV---TLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 179 ~~giG~~~~~~~d~--~g~~---~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v 252 (471)
..++||.+....+. .+.. .++|..|.++|||++ +||++||+|++|||+++.+++..++..+++. .+..+.|+|
T Consensus 21 ~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v 99 (114)
T 1uew_A 21 NEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRI 99 (114)
T ss_dssp TSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEE
T ss_pred CCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 45899998642211 1211 358999999999999 9999999999999999999877888888875 789999999
Q ss_pred EcCCC
Q 012084 253 KHGNC 257 (471)
Q Consensus 253 ~r~~~ 257 (471)
.|++.
T Consensus 100 ~r~~~ 104 (114)
T 1uew_A 100 IPQEE 104 (114)
T ss_dssp CCCSC
T ss_pred EeCCc
Confidence 88753
No 134
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=1.8e-08 Score=85.25 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=58.3
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+.... + .+++|..|.++|||+++||++||+|++|||+++.++...+...++. ..++.++|+|.|++.
T Consensus 30 ~~lG~~~~~~~--~--~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~~~ 102 (117)
T 1uit_A 30 EPLGISIVSGE--K--GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIG-QQCDTITILAQYNPH 102 (117)
T ss_dssp CCCCEEEEECT--T--SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTT-SCCSEEEEEECCCSC
T ss_pred CCccEEEEccC--C--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCc
Confidence 47788876421 1 2689999999999999999999999999999999987555544343 568899999988753
No 135
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.78 E-value=1.2e-08 Score=87.43 Aligned_cols=75 Identities=29% Similarity=0.387 Sum_probs=60.0
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
...++|+.+..-.+ ....++|..|.++|||+++| |++||+|++|||+++.+++..++..++++..+ .++|+|.|.
T Consensus 29 ~~~~lG~~i~gg~~--~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~ 104 (125)
T 3hpk_A 29 AQNLIGISIGGGAQ--YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYNKL 104 (125)
T ss_dssp TTSCCCEEEEECSS--CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS-EEEEEEEEE
T ss_pred CCCCcCEEEeccCC--CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEEC
Confidence 34678998865221 11358899999999999999 99999999999999998877888888876544 599998773
No 136
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.78 E-value=1.4e-08 Score=92.06 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=61.8
Q ss_pred eeeeEEEEEe---eC-CCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 180 SGIGINLREV---PD-ANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 180 ~giG~~~~~~---~d-~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
.|+|+.+... .+ ..+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..++++ .|..|+|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 5899998752 11 0122478999999999999999 99999999999999999888888888877 57899999987
Q ss_pred C
Q 012084 255 G 255 (471)
Q Consensus 255 ~ 255 (471)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.77 E-value=1.2e-08 Score=81.82 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=46.6
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
++.|..+.++|||+++||++||+|++|||+++.++ .++..++.. ..|+.++|+|.|++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g 78 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG 78 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETT
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 45677777777889999999999999999999986 455555543 45789999999876
No 138
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-08 Score=83.54 Aligned_cols=75 Identities=27% Similarity=0.390 Sum_probs=60.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+..-.+. ...++|..|.++|||+++ ||++||+|++|||+++.+++..++..+++... ..++|++.+..
T Consensus 20 ~~~lG~~l~~g~~~--~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~ 95 (103)
T 2dc2_A 20 HEGLGISITGGKEH--GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVA 95 (103)
T ss_dssp SSCCCEEEEEEGGG--TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEEEEEEECC
T ss_pred CCccCEEEEeccCC--CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecC
Confidence 46889988652211 136899999999999995 99999999999999999988888888887543 48899887754
No 139
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.76 E-value=1.7e-08 Score=86.98 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=60.9
Q ss_pred ceeeeEEEEEeeCC----C---CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEE
Q 012084 179 MSGIGINLREVPDA----N---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250 (471)
Q Consensus 179 ~~giG~~~~~~~d~----~---g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l 250 (471)
..++|+.+....+. . ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++..+++. .+..++|
T Consensus 41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l 119 (128)
T 1nf3_C 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA-NSRNLII 119 (128)
T ss_dssp TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHH-TTTSEEE
T ss_pred CCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 46788888643210 0 11368999999999999999 99999999999999988888888888864 3556999
Q ss_pred EEEcCC
Q 012084 251 EVKHGN 256 (471)
Q Consensus 251 ~v~r~~ 256 (471)
+|.|.+
T Consensus 120 ~v~r~~ 125 (128)
T 1nf3_C 120 TVRPAN 125 (128)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 998875
No 140
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.76 E-value=1.7e-08 Score=85.63 Aligned_cols=74 Identities=31% Similarity=0.458 Sum_probs=59.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.++...+...+++. .+..+.|+|.|.+
T Consensus 24 ~~glG~~l~~~~~---~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 24 STGLGFNIVGGED---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp TSCCCEEEEECGG---GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCCccEEEecCCC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 3579999876321 1368999999999999999 99999999999999999876555555544 5778999998754
No 141
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.75 E-value=2.1e-08 Score=92.59 Aligned_cols=74 Identities=31% Similarity=0.448 Sum_probs=62.5
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..|+|+.+..-.+ ...+++|..|.++|||+++||++||+|++|||+++.+++..++..+++. |..+.|+|.|++
T Consensus 95 ~~~lG~~i~~~~~--~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g 168 (192)
T 3k1r_A 95 PEGLGLSVRGGLE--FGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIG 168 (192)
T ss_dssp TTCCCEEEEEEGG--GTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECC
T ss_pred CCceeEEEEcccc--cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECC
Confidence 3588998864211 1247899999999999999999999999999999999877888888876 889999999876
No 142
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.75 E-value=2.8e-09 Score=87.86 Aligned_cols=72 Identities=22% Similarity=0.269 Sum_probs=58.2
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
...++|+.+.. . ..++|..|.++|||+++||++||+|++|||+++..++..++..+++.. +.+++|+|.|+.
T Consensus 24 ~~~g~G~~~~~---~---~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 95 (100)
T 1whd_A 24 GKDGFGFTICC---D---SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRVS 95 (100)
T ss_dssp CSSSSSCBCCC---S---SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred CCCeeeEEEeC---C---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 44677877643 1 257899999999999999999999999999999988777887777654 345999998864
No 143
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.75 E-value=2.1e-08 Score=81.47 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=61.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
.++|+.+.. ++....+|.++.++|||++.| |++||+|++|||+++.+++.+++.++|+. +.|.+++|++.++.
T Consensus 16 ~~LG~tI~~----~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~ 90 (95)
T 3gge_A 16 DSLGLTITD----NGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPK 90 (95)
T ss_dssp SCCCEEEEC----SSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred CCceEEEEc----CCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECcc
Confidence 578888853 222357899999999999998 99999999999999999999999999875 67888999887653
No 144
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.75 E-value=2.3e-08 Score=84.41 Aligned_cols=74 Identities=30% Similarity=0.393 Sum_probs=57.3
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++|+.+.... +....++|..|.++|||+++| |++||+|++|||+++.+.+..++..++++..+ .++|+|++.
T Consensus 35 ~~~lG~~l~~~~--~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~ 109 (114)
T 2gzv_A 35 QNLIGISIGGGA--QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKG-EVTIHYNKL 109 (114)
T ss_dssp TSCCSEEEEECC--C--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS-EEEEEEECC
T ss_pred CCcEeEEEEeCC--CCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC-eEEEEEEec
Confidence 456899886521 111258999999999999999 99999999999999977666788888865444 588888653
No 145
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.75 E-value=8.3e-09 Score=86.06 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=60.2
Q ss_pred eeeeEEEEEeeC-----C-CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEE
Q 012084 180 SGIGINLREVPD-----A-NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 180 ~giG~~~~~~~d-----~-~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v 252 (471)
.++|+.+....+ . .+..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .|+.+.|+|
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 578888862210 0 012368899999999999999 99999999999999997766677677765 478999999
Q ss_pred EcCCC
Q 012084 253 KHGNC 257 (471)
Q Consensus 253 ~r~~~ 257 (471)
.|++.
T Consensus 99 ~R~~~ 103 (108)
T 1q7x_A 99 EKGQS 103 (108)
T ss_dssp ECCCC
T ss_pred EeCCc
Confidence 98753
No 146
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.74 E-value=8.6e-09 Score=87.57 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=60.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc--CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCC---CcEEEEEE
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA--GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS---ETFVTIEV 252 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a--Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~---g~~v~l~v 252 (471)
...++|+.+..-.+. ...++|..|.++|||++| ||++||+|++|||+++.+++..++..+++... +..+.|+|
T Consensus 25 ~~~~~G~~l~gg~~~--~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v 102 (119)
T 2cs5_A 25 ENGRFGFNVKGGYDQ--KMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 102 (119)
T ss_dssp SSSCCSEEEEEEGGG--TEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCcCEEEecccCC--CCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEE
Confidence 345688888642211 135899999999999999 99999999999999999987778777776433 35899999
Q ss_pred EcCC
Q 012084 253 KHGN 256 (471)
Q Consensus 253 ~r~~ 256 (471)
.|+.
T Consensus 103 ~R~~ 106 (119)
T 2cs5_A 103 RPNA 106 (119)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 8865
No 147
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=4e-09 Score=87.65 Aligned_cols=75 Identities=25% Similarity=0.292 Sum_probs=59.4
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..++|+.+.... +..+++|..|.++|||+++||++||+|++|||+++..++..++..+++. .+..+.|++.|.+.
T Consensus 18 ~~~~G~~l~~~~---~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 18 GGSYGFSLKTVQ---GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSSCSCCEECCS---SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCCEEEEecc---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 457888876422 2235789999999999999999999999999999998877777666653 36789999987653
No 148
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.74 E-value=2.6e-08 Score=80.97 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=57.0
Q ss_pred eeeEEEEEeeC------CCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 181 GIGINLREVPD------ANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 181 giG~~~~~~~d------~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
++||.+..-.+ .....+++|..|.++|||++ ||++||+|++|||+++..+...++..+++ ..++.++|+|.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 78888864111 01123689999999999999 99999999999999999887666666665 457889999987
Q ss_pred C
Q 012084 255 G 255 (471)
Q Consensus 255 ~ 255 (471)
+
T Consensus 92 ~ 92 (95)
T 1mfg_A 92 E 92 (95)
T ss_dssp E
T ss_pred C
Confidence 5
No 149
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.74 E-value=1.2e-08 Score=88.66 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=52.9
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCCCCeeEEEEe
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
+++|..|.++|||+ |||++||+|++|||+++.++ .++...+.. ++|++++|+|.|++ +..+++++
T Consensus 58 g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 123 (134)
T 2l97_A 58 GVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNG--KEETTSIK 123 (134)
T ss_dssp CEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETT--EEEEEEEE
T ss_pred CEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECC--EEEEEEEE
Confidence 68899999999999 99999999999999999986 456555554 37899999999976 34445443
No 150
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.72 E-value=1.8e-08 Score=86.26 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=61.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..++|+.+....+. ....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|++.
T Consensus 35 ~~glG~~l~~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~ 112 (124)
T 2daz_A 35 KNGLGLSLAGNKDR-SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA-PSKVKLVFIRNED 112 (124)
T ss_dssp SSCCCEEEECBSST-TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHS-CSEEEEEEEECTT
T ss_pred CCccCEEEeccCCC-CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCCC
Confidence 45889988643221 12368999999999999999 999999999999999988777777667544 4589999988653
No 151
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=2.5e-08 Score=82.98 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=59.9
Q ss_pred ceeeeEEEEEeeCC------CCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEE
Q 012084 179 MSGIGINLREVPDA------NGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIE 251 (471)
Q Consensus 179 ~~giG~~~~~~~d~------~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~ 251 (471)
..++|+.+..-.+. .....++|..|.++|||+++ ||++||+|++|||+++..++..++..+++. .+..+.|+
T Consensus 18 ~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~ 96 (107)
T 1uhp_A 18 SGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQ 96 (107)
T ss_dssp SSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEE
T ss_pred CCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEE
Confidence 46789988642110 01236899999999999999 999999999999999998877777777764 46788998
Q ss_pred EEcCC
Q 012084 252 VKHGN 256 (471)
Q Consensus 252 v~r~~ 256 (471)
|.|.+
T Consensus 97 v~R~~ 101 (107)
T 1uhp_A 97 VLRRT 101 (107)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 87754
No 152
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=84.24 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=57.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
.++|+.+..-.+ ....++|..|.++|||+++ ||++||+|++|||+++..+ ..++..+++.. ++.++|+|.|++.
T Consensus 21 ~~~G~~~~gg~~--~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLE--HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGS-FRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGG--GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTC-CSSCEEEEEECCC
T ss_pred CCcCEEEeccCC--CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 467777754211 1135889999999999999 9999999999999999986 46666667653 6789999988763
No 153
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=98.17 E-value=1.6e-09 Score=91.41 Aligned_cols=92 Identities=26% Similarity=0.397 Sum_probs=62.2
Q ss_pred CCCceeecChHHhhh-----hhcccceeeeEEEEEeeCCCCceEEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCC
Q 012084 159 GDPYTRFLSPAEFSK-----MARYDMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKS 232 (471)
Q Consensus 159 ~D~Ht~~l~~~~~~~-----~~~~~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~ 232 (471)
.|+|..++....+.. +.+....++|+.+..-.+ ...+++|..|.++|||++ +||++||+|++|||+++.+.+
T Consensus 13 ~~~~~~~me~~~~~~~~~v~l~k~~~~glG~~l~~g~~--~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~ 90 (112)
T 2lob_A 13 GHIEGRHMENLYFQGIRKVLLLKEDHEGLGISITGGKE--HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTK 90 (112)
Confidence 466666654432221 112334578888754211 113588999999999999 999999999999999998766
Q ss_pred HHHHHHhhCCCCCcEEEEEEE
Q 012084 233 AFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 233 ~~~~~~ll~g~~g~~v~l~v~ 253 (471)
..++..+++.. +..++|+|.
T Consensus 91 ~~~~~~~l~~~-~~~v~l~V~ 110 (112)
T 2lob_A 91 HKEAVTILSQQ-RGEIEFEVV 110 (112)
Confidence 67777777643 334666653
No 154
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.71 E-value=9.3e-09 Score=86.23 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=62.6
Q ss_pred cceeeeEEEEEeeCC-------CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEE
Q 012084 178 DMSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVT 249 (471)
Q Consensus 178 ~~~giG~~~~~~~d~-------~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~ 249 (471)
...++||.+....+. +....++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..++
T Consensus 19 ~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~ 97 (111)
T 1uju_A 19 PGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLT 97 (111)
T ss_dssp TTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEE
T ss_pred CCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEE
Confidence 346889988642210 112358999999999999999 99999999999999998877888888876 578999
Q ss_pred EEEEcCC
Q 012084 250 IEVKHGN 256 (471)
Q Consensus 250 l~v~r~~ 256 (471)
|+|.|+.
T Consensus 98 l~v~r~~ 104 (111)
T 1uju_A 98 VLVCDGF 104 (111)
T ss_dssp ECCCCCC
T ss_pred EEEEECC
Confidence 9998764
No 155
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.70 E-value=7.3e-09 Score=83.51 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=52.5
Q ss_pred EEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEEe
Q 012084 198 LKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 198 ~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
++|..|.++|||+++||++||+|++|||+++.++ .++...+....|+.+.|++.|++ ...++.+.
T Consensus 6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g--~~~~~~v~ 70 (91)
T 2zpm_A 6 PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQG--SPLSLTLI 70 (91)
T ss_dssp CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETT--EEEEEEEC
T ss_pred eEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECC--eEEEEEEE
Confidence 4678899999999999999999999999999976 56666666557889999999876 33444443
No 156
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.70 E-value=4.3e-08 Score=81.45 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=44.8
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
++.|..+.+.|||+++||++||+|++|||+++.++. ++..++.. ..|+.++|+|.|++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~--d~~~~~~~~~~g~~v~l~v~R~g 96 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDG 96 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTT--HHHHHHHHHTTCSEEEEEEEETT
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhcCCCCeEEEEEEECC
Confidence 345666666667799999999999999999999884 44444432 46789999999876
No 157
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.3e-08 Score=85.12 Aligned_cols=76 Identities=26% Similarity=0.420 Sum_probs=60.0
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~---g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.++||.+..-.+.. +...++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .++.++|+|.|+
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 68999986421110 12368999999999999999 99999999999999999877777777754 367899999775
Q ss_pred C
Q 012084 256 N 256 (471)
Q Consensus 256 ~ 256 (471)
+
T Consensus 107 ~ 107 (120)
T 2eno_A 107 L 107 (120)
T ss_dssp E
T ss_pred C
Confidence 3
No 158
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.69 E-value=1.3e-08 Score=86.67 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=59.7
Q ss_pred eeeEEEEEeeCCCCceEEEEEEEcC--CCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 181 GIGINLREVPDANGVVTLKVLGLIL--DGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 181 giG~~~~~~~d~~g~~~~~V~~v~~--~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
||++.+..-. .+...+++|..|.+ +|||++|||++||+|++|||+++..+...++..+++.. |+.+.|+|.|++.
T Consensus 30 G~~v~l~~~~-~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 30 GFSVTVESAS-SNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp SSEEEEECTT-SSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred eEEEEecccc-ccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 6666643210 01124789999999 99999999999999999999999998767888888776 8899999998764
No 159
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.69 E-value=6.8e-09 Score=84.60 Aligned_cols=65 Identities=14% Similarity=0.263 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCCCCeeEEEEe
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
+++|..|.++|||++ ||++||+|++|||+++.++ .++..++.. ..|+.++|+|.|++ ...++++.
T Consensus 6 Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g--~~~~~~v~ 71 (94)
T 2kl1_A 6 GVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDR--KQHEAELV 71 (94)
T ss_dssp CEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETT--EEEEEEEC
T ss_pred cEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC--EEEEEEEE
Confidence 588999999999999 9999999999999999875 566666655 37899999999976 33444443
No 160
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.68 E-value=8.6e-08 Score=80.65 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=59.6
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~ 257 (471)
..|+||.+..- .. +.+|..+++ |++.+||++||+|++|||+++.+++..++.++|+. +.|+.|+|+|.|++.
T Consensus 22 ~~G~GFsI~~~--~~---g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 22 PKGFGFAIADS--PT---GQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TTBSSEEEEEE--TT---EEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CCcccEEEeCC--CC---CcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 45899998531 11 345888887 68899999999999999999999988899999975 669999999999764
No 161
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.68 E-value=3.4e-08 Score=83.12 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=58.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
..++|+.+....+.. .+++|..|.++|||+++||++||+|++|||+++..+...++..+++. +..+.|+|.|+
T Consensus 26 ~~~lG~~l~~~~~~~--~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~ 98 (114)
T 1x5n_A 26 SRGLGCSISSGPIQK--PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAA 98 (114)
T ss_dssp SCCCCEEEEECCSSS--CSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSS
T ss_pred CCceeEEEeecCCCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcC
Confidence 467899987532211 36899999999999999999999999999999999876566666643 25789999886
No 162
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.67 E-value=5e-08 Score=97.36 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=60.2
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEc-CC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKH-GN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r-~~ 256 (471)
+..+|+.+..... ..+++|..|.++|||++|||++||+|++|||+++..+ .++..++.. .+|++++|+|.| ++
T Consensus 228 ~~~lGi~~~~~~~---~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~g 302 (324)
T 1y8t_A 228 HASLGVQVTNDKD---TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPSG 302 (324)
T ss_dssp CEECCEEEESCSS---SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSSC
T ss_pred ccccceEeeeccC---CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCC
Confidence 5788888865321 2368899999999999999999999999999999986 566666643 679999999999 76
Q ss_pred C
Q 012084 257 C 257 (471)
Q Consensus 257 ~ 257 (471)
+
T Consensus 303 ~ 303 (324)
T 1y8t_A 303 G 303 (324)
T ss_dssp C
T ss_pred C
Confidence 4
No 163
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.67 E-value=3.3e-08 Score=83.61 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=60.1
Q ss_pred ceeeeEEEEEeeCC-------CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEE
Q 012084 179 MSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTI 250 (471)
Q Consensus 179 ~~giG~~~~~~~d~-------~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l 250 (471)
..++|+.+..-.+. ....+++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .+..+.|
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l 104 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVF 104 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEE
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 45788887431110 011368999999999999999 99999999999999998877777777764 5788999
Q ss_pred EEEcCC
Q 012084 251 EVKHGN 256 (471)
Q Consensus 251 ~v~r~~ 256 (471)
+|.|..
T Consensus 105 ~v~r~~ 110 (117)
T 2ehr_A 105 IVQSLS 110 (117)
T ss_dssp EECCBS
T ss_pred EEEECC
Confidence 997754
No 164
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.67 E-value=7.5e-08 Score=88.26 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=60.6
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..|+|+.+..-.+. .+..+++|..|.++|||+++| |++||+|++|||+++.+++..+...+++. .|..++|++.|
T Consensus 15 ~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~r 93 (196)
T 3gsl_A 15 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 93 (196)
T ss_dssp TTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEE
T ss_pred CCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEe
Confidence 35788888642211 012368999999999999999 99999999999999999876666656654 47899999987
Q ss_pred CCC
Q 012084 255 GNC 257 (471)
Q Consensus 255 ~~~ 257 (471)
.+.
T Consensus 94 ~~~ 96 (196)
T 3gsl_A 94 RKP 96 (196)
T ss_dssp ECC
T ss_pred cCC
Confidence 653
No 165
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.66 E-value=3.8e-08 Score=92.08 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=56.1
Q ss_pred ceEEEEEEEcCCCchhhcCCCCC-CEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEEe
Q 012084 195 VVTLKVLGLILDGPAHSAGVRQG-DEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 195 ~~~~~V~~v~~~spA~~aGl~~G-D~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
..+++|..|.++|||++|||++| |+|++|||+++..+... ...++....|++++|+|.|.+.....++++.
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~-~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~ 86 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDT-LKDLLKANVEKPVKMLIYSSKTLELRETSVT 86 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSH-HHHHHHHTTTSCEEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHH-HHHHHhcCCCCEEEEEEEecCCceEEEEEEc
Confidence 35789999999999999999999 99999999999987522 2233444668899999988765566666653
No 166
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.66 E-value=1.6e-08 Score=85.64 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=60.2
Q ss_pred cceeeeEEEEEeeCC----CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 178 DMSGIGINLREVPDA----NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 178 ~~~giG~~~~~~~d~----~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
...++||.+..-.+. .+...++|..|.++|||+ +||++||+|++|||+++..+...++..+++. .++.+.|+|.
T Consensus 24 ~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~ 101 (117)
T 2csj_A 24 SKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVK 101 (117)
T ss_dssp SSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEE
T ss_pred CCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEE
Confidence 346899998642211 022368999999999997 8999999999999999999877777777765 5789999998
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|.+
T Consensus 102 R~~ 104 (117)
T 2csj_A 102 RPR 104 (117)
T ss_dssp EEE
T ss_pred ECC
Confidence 754
No 167
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.66 E-value=2.9e-08 Score=82.01 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=57.7
Q ss_pred eeeeEEEEEeeCC------CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEE
Q 012084 180 SGIGINLREVPDA------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 180 ~giG~~~~~~~d~------~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~ 253 (471)
.++|+.+..-.+. ....+++|..|.++|||++ ||++||+|++|||+++..+...++..+++ ..++.++|+|.
T Consensus 21 ~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~ 98 (103)
T 1n7t_A 21 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIV 98 (103)
T ss_dssp SCCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEE
T ss_pred CCccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEE
Confidence 3788888641100 0123689999999999999 99999999999999999887677766665 45789999998
Q ss_pred cC
Q 012084 254 HG 255 (471)
Q Consensus 254 r~ 255 (471)
|+
T Consensus 99 R~ 100 (103)
T 1n7t_A 99 RE 100 (103)
T ss_dssp CC
T ss_pred ec
Confidence 75
No 168
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.65 E-value=2.8e-08 Score=83.52 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=52.9
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEEee
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQR 267 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l~r 267 (471)
+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. ++.+.|++.|++ ...++++..
T Consensus 36 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g--~~~~~~v~~ 100 (113)
T 2pzd_A 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGR--ETLTLYVTP 100 (113)
T ss_dssp CEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETT--EEEEEEECC
T ss_pred CeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECC--EEEEEEEEE
Confidence 68899999999999999999999999999999874 566666654 678999999876 344555543
No 169
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.64 E-value=9.2e-08 Score=95.22 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=63.9
Q ss_pred ceeeeEEEEEeeCC-------CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEE
Q 012084 179 MSGIGINLREVPDA-------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTI 250 (471)
Q Consensus 179 ~~giG~~~~~~~d~-------~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l 250 (471)
...+|+.+..+... +...+++|..|.++|||++|||++||+|++|||+++..+ .++..+++. .+|++++|
T Consensus 220 ~~~lGi~~~~~~~~~~~~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l 297 (318)
T 1te0_A 220 RGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPV 297 (318)
T ss_dssp CEECCEEEEECSCCCSSSSCSSSCCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEE
T ss_pred cccceeEeeecchhHHHhccCCCCCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEE
Confidence 45678777654311 011368999999999999999999999999999999985 567777765 68999999
Q ss_pred EEEcCCCCCeeEEEE
Q 012084 251 EVKHGNCGPIESIQV 265 (471)
Q Consensus 251 ~v~r~~~~~~~~v~l 265 (471)
+|.|+++ ..++++
T Consensus 298 ~v~R~g~--~~~~~v 310 (318)
T 1te0_A 298 VVMRDDK--QLTLQV 310 (318)
T ss_dssp EEESSSC--EEEEEE
T ss_pred EEEECCE--EEEEEE
Confidence 9999764 344444
No 170
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.64 E-value=9.1e-08 Score=88.07 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=54.7
Q ss_pred eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc---CCCCCeeEEEEe
Q 012084 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH---GNCGPIESIQVQ 266 (471)
Q Consensus 196 ~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r---~~~~~~~~v~l~ 266 (471)
.+++|..|.++|||++ ||++||+|++|||+++.++...++..+++.. +..|.|+|.| ++.....++++.
T Consensus 24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~~ 95 (195)
T 2qbw_A 24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRVE 95 (195)
T ss_dssp CSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEee
Confidence 4689999999999999 9999999999999999998777777777654 4589999988 543333344443
No 171
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.64 E-value=2.1e-08 Score=83.17 Aligned_cols=77 Identities=22% Similarity=0.425 Sum_probs=59.9
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCC----CCcEEEEEEE
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGP----SETFVTIEVK 253 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~----~g~~v~l~v~ 253 (471)
..|+||.+..-.+ .+...++|..|.+++||+++| |++||+|++|||+++..++.+++.++|+.. .++.+++++.
T Consensus 16 ~~glG~~i~gg~~-~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 16 AATLGIAIEGGAN-TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSSCCEEEECBTT-SSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CCcCCeEEECCCC-CCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 4689999864211 111224899999999999999 999999999999999998888888877642 5678888887
Q ss_pred cCC
Q 012084 254 HGN 256 (471)
Q Consensus 254 r~~ 256 (471)
|.+
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 754
No 172
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.63 E-value=6.9e-08 Score=89.19 Aligned_cols=81 Identities=27% Similarity=0.371 Sum_probs=64.1
Q ss_pred ccceeeeEEEEEeeCC--CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCC-CcEEEEEE
Q 012084 177 YDMSGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPS-ETFVTIEV 252 (471)
Q Consensus 177 ~~~~giG~~~~~~~d~--~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~-g~~v~l~v 252 (471)
....|+|+.+..-.+. .+..+++|..|.++|||++|| |++||+|++|||+++.+++..++..+++... |+.++|++
T Consensus 15 ~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v 94 (196)
T 1p1d_A 15 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 94 (196)
T ss_dssp BTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEE
T ss_pred CCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 3457899998752110 112358899999999999999 9999999999999999766678878886654 88999999
Q ss_pred EcCCC
Q 012084 253 KHGNC 257 (471)
Q Consensus 253 ~r~~~ 257 (471)
.|++.
T Consensus 95 ~R~~~ 99 (196)
T 1p1d_A 95 EFDVA 99 (196)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 88764
No 173
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.61 E-value=1.1e-07 Score=88.03 Aligned_cols=76 Identities=25% Similarity=0.246 Sum_probs=60.7
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhc-CCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSA-GVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~a-Gl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
...++|+.+..-.+. ..+++|..|.++|||++| ||++||+|++|||+++.+++..++..+++. .|+++.|+|.|++
T Consensus 17 ~~~~lG~~i~~~~~~--~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 17 EGTTLGLTVSGGIDK--DGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKN-VGERVVLEVEYEL 93 (200)
T ss_dssp TTCCCCEEEECCTTS--SSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CCCCCCEEEecccCC--CCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence 346789888642111 135789999999999999 999999999999999999987777777754 4779999998754
No 174
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.60 E-value=6.2e-08 Score=81.28 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=51.9
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEEe
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQ 266 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l~ 266 (471)
+++|..|.++|||+++||++||+|++|||+++.++ .++...+ ..|+.+.|+|.|++ ...++++.
T Consensus 36 gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l--~~g~~v~l~v~R~g--~~~~~~v~ 99 (112)
T 2p3w_A 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAV--LTESPLLLEVRRGN--DDLLFSIA 99 (112)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHH--HHCSSEEEEEEETT--EEEEEEEC
T ss_pred CeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHH--hCCCeEEEEEEECC--EEEEEEEE
Confidence 58899999999999999999999999999999875 5666666 34778999999876 33444443
No 175
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.60 E-value=1.8e-08 Score=84.70 Aligned_cols=70 Identities=27% Similarity=0.330 Sum_probs=56.9
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.++|+.+.. . ..++|..|.++|||++|||++||+|++|||+++..++..++..+++...++.+.|+|.+.
T Consensus 26 ~~~G~~l~~---~---~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~~ 95 (111)
T 1vae_A 26 GDLGFTLRG---N---TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSL 95 (111)
T ss_dssp SCCSCCEES---S---SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred CcccEEEeC---C---CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEec
Confidence 567776642 1 246789999999999999999999999999999976668888888766677788888764
No 176
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.57 E-value=5.8e-08 Score=99.38 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=62.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
.++|+.+..- .+ .+++|..|.+||||++|||++||+|++|||+++.+++..++..++++ ..|+.++|+|.|++
T Consensus 19 ~~lG~~i~gg--~~--~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 19 DSVGLRLAGG--ND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SSCCEEEEEE--TT--TEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CceeEEEEec--CC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 3688888642 12 37899999999999999999999999999999999888888888876 78999999998764
No 177
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.55 E-value=6e-08 Score=93.72 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=62.8
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhh-cCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHS-AGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~-aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
...|+||.+..-. +....++|..|.++|||++ +||++||+|++|||+++.+++..++..++++. |..|+|+|.|.+
T Consensus 87 ~~~glGf~I~gg~--d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~-g~~V~L~V~R~~ 163 (263)
T 1z87_A 87 DAGGLGISIKGGR--ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKYMK 163 (263)
T ss_dssp TTCCCCCEEEEET--TTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred CCCCEeEEEeecc--CCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcC-CCeEEEEEEeCc
Confidence 3468999986522 1224799999999999999 79999999999999999999888888888765 677999998864
No 178
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.55 E-value=2.8e-08 Score=83.34 Aligned_cols=74 Identities=30% Similarity=0.447 Sum_probs=59.0
Q ss_pred ceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 179 MSGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 179 ~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
..++|+.+....+ ...++|..|.++|||+++| |++||+|++|||+++..+...++..+++. .+..+.|+|.|++
T Consensus 25 ~~glG~~l~~~~~---~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 99 (113)
T 1um7_A 25 STGLGFNIVGGED---GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKR-AGQSVTIVAQYRP 99 (113)
T ss_dssp SSCSSBCCBCCST---TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHS-CCSEEEEEEECCH
T ss_pred CCcccEEEEeccC---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEECc
Confidence 4578888754221 1368899999999999999 99999999999999999876777666653 5778999988754
No 179
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.5e-08 Score=80.58 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=56.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+.. ...++|..|.++|||+ +||++||+|++|||+++..+...++..+++. .|+.++|+|.|++
T Consensus 21 ~~~G~~l~~------~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 21 QDYGFHISE------SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp CSCSBCCCS------SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred CcccEEEec------CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 367776632 1257899999999996 9999999999999999998877777777765 5889999998875
No 180
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.51 E-value=1.1e-07 Score=95.71 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=52.6
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNCG 258 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~~ 258 (471)
+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|+|.|+++.
T Consensus 264 G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~ 324 (345)
T 3stj_A 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP 324 (345)
T ss_dssp SEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred eEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 68999999999999999999999999999999975 567666654 6899999999998743
No 181
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.48 E-value=2.9e-07 Score=85.36 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=58.5
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+.. .. .+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+.|+|.|..
T Consensus 125 ~~lG~~~~~---~~--~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~ 196 (206)
T 3r0h_A 125 KELGLSLSP---NE--IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRPK 196 (206)
T ss_dssp CCCCEEEEE---CS--SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred CccCeEEEc---CC--ceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 467888764 11 258999999999999999 99999999999999999877777777765 4568999998754
No 182
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.48 E-value=2.7e-08 Score=93.61 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=60.6
Q ss_pred cceeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEE-EEEEEcCC
Q 012084 178 DMSGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFV-TIEVKHGN 256 (471)
Q Consensus 178 ~~~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v-~l~v~r~~ 256 (471)
...|+|+.+... .+..+++|..|.++|||+++||++||+|++|||+++.+++..++..++++. |..+ .|+|.|++
T Consensus 18 ~~~glG~~l~~~---~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g 93 (216)
T 2krg_A 18 GPSGYGFNLHSD---KSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRET 93 (216)
T ss_dssp CSSSSCEEECCC---SSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHH
T ss_pred CCCCceEEEEec---CCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECC
Confidence 346899988652 222258899999999999999999999999999999976667887777655 7788 88888765
No 183
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.46 E-value=3.6e-07 Score=78.40 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=49.0
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEEEEEEcCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGN 256 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~l~v~r~~ 256 (471)
+++|..|.++|||+++ |++||+|++|||+++..+ .++...+. ...|+.++|+| |++
T Consensus 26 gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g 82 (125)
T 2hga_A 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQG 82 (125)
T ss_dssp CEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTE
T ss_pred ceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECC
Confidence 6889999999999999 999999999999999986 56666676 46789999999 865
No 184
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.40 E-value=3.8e-07 Score=85.27 Aligned_cols=85 Identities=16% Similarity=0.231 Sum_probs=61.9
Q ss_pred eeeeEEEEEeeCCCC-ceEEEEEEEcCCCchhhcCCCC-CCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 180 SGIGINLREVPDANG-VVTLKVLGLILDGPAHSAGVRQ-GDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 180 ~giG~~~~~~~d~~g-~~~~~V~~v~~~spA~~aGl~~-GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
..+|+.+..+..+.. ..+++|..|.++|||++|||++ ||+|++|||+ +.++ .++...++...|+.+.|+|.|++.
T Consensus 95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~ 171 (209)
T 3rle_A 95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDT 171 (209)
T ss_dssp SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTT
T ss_pred CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCc
Confidence 356777765432211 1368899999999999999999 9999999998 8776 455555655578899999988654
Q ss_pred CCeeEEEEee
Q 012084 258 GPIESIQVQR 267 (471)
Q Consensus 258 ~~~~~v~l~r 267 (471)
...++++++.
T Consensus 172 ~~~~~v~l~p 181 (209)
T 3rle_A 172 DNCREVIITP 181 (209)
T ss_dssp TEEEEEEECC
T ss_pred eEEEEEEEEe
Confidence 4445666543
No 185
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.39 E-value=3.1e-07 Score=84.71 Aligned_cols=76 Identities=20% Similarity=0.339 Sum_probs=60.0
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+....+.....+++|..|.++|||+++| |++||+|++|||+++.+++..++.++++.. +..+.|+|.|++
T Consensus 119 ~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 119 VELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 4577777542211111368899999999999999 999999999999999987667888888655 889999998865
No 186
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.39 E-value=5.1e-07 Score=82.65 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=60.5
Q ss_pred eeeeEEEEEeeCCC---CceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcC
Q 012084 180 SGIGINLREVPDAN---GVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHG 255 (471)
Q Consensus 180 ~giG~~~~~~~d~~---g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~ 255 (471)
.++|+.+....... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+.|+|.|+
T Consensus 111 ~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 189 (196)
T 3gsl_A 111 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKP 189 (196)
T ss_dssp TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEE
T ss_pred CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCC
Confidence 36788776422110 11358999999999999999 99999999999999999777788888864 478899999887
Q ss_pred CC
Q 012084 256 NC 257 (471)
Q Consensus 256 ~~ 257 (471)
+.
T Consensus 190 ~~ 191 (196)
T 3gsl_A 190 SN 191 (196)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 187
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.39 E-value=4e-07 Score=91.73 Aligned_cols=61 Identities=31% Similarity=0.414 Sum_probs=53.2
Q ss_pred eEEEEEEEcCCCchhhcCCCC-----------CCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEEEEEEcCCCC
Q 012084 196 VTLKVLGLILDGPAHSAGVRQ-----------GDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGNCG 258 (471)
Q Consensus 196 ~~~~V~~v~~~spA~~aGl~~-----------GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~l~v~r~~~~ 258 (471)
.+++|..|.++|||++|||++ ||+|++|||+++.++ .++...+. ..+|++++|+|.|+++.
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~ 323 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK 323 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence 368999999999999999999 999999999999987 56777774 46799999999998743
No 188
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.39 E-value=4.4e-07 Score=94.54 Aligned_cols=73 Identities=30% Similarity=0.441 Sum_probs=61.7
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~ 256 (471)
.++|+.+..- .+ .+++|..|.+||||+++||++||+|++|||+++.+++..++..+|++ +.|+.|+|+|.|++
T Consensus 11 ~~lG~~i~gg--~~--~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGG--ND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEE--TT--TEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEcc--Cc--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 4678877542 12 37999999999999999999999999999999999888888888876 57899999998854
No 189
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.37 E-value=7.6e-07 Score=92.81 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=59.2
Q ss_pred ceeeeEEEEEeeCC-------CCc-eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEE
Q 012084 179 MSGIGINLREVPDA-------NGV-VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVT 249 (471)
Q Consensus 179 ~~giG~~~~~~~d~-------~g~-~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~ 249 (471)
...+|+.+..+..+ ... .+++|..|.++|||++|||++||+|++|||+++.++ .++...+. ...|++++
T Consensus 257 r~~lGv~~~~~~~~~a~~~gl~~~~~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~ 334 (451)
T 3pv2_A 257 RGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVK 334 (451)
T ss_dssp CCBCCEEEEECCHHHHHHTTSCTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEE
T ss_pred cccccceEEeccHHHHHhcCCCcCCceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEE
Confidence 45678877654310 011 368999999999999999999999999999999986 45555554 36789999
Q ss_pred EEEEcCC
Q 012084 250 IEVKHGN 256 (471)
Q Consensus 250 l~v~r~~ 256 (471)
|+|.|++
T Consensus 335 l~V~R~g 341 (451)
T 3pv2_A 335 IIVERDN 341 (451)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999976
No 190
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.32 E-value=8.3e-07 Score=82.01 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=61.0
Q ss_pred eeeeEEEEEeeCC--CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDA--NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~--~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+....+. ....+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++. .+..+.|+|.|++
T Consensus 117 ~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 195 (200)
T 2qt5_A 117 NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDV 195 (200)
T ss_dssp TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 4567776542111 112478999999999999999 99999999999999997777888888877 7889999998864
No 191
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.30 E-value=1.1e-06 Score=96.92 Aligned_cols=88 Identities=24% Similarity=0.328 Sum_probs=67.3
Q ss_pred ceeeeEEEEEeeCC---CCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 179 MSGIGINLREVPDA---NGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 179 ~~giG~~~~~~~d~---~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
..|+||.+..-.+. .+..+++|..|.++|||+++| |+.||+|++|||+++.+++..++..++++ .|+.|+|+|.|
T Consensus 69 ~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 147 (721)
T 2xkx_A 69 NSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMR 147 (721)
T ss_pred CCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEe
Confidence 36899988631110 012468999999999999999 99999999999999999987788777765 47899999988
Q ss_pred CCCC--CeeEEEEee
Q 012084 255 GNCG--PIESIQVQR 267 (471)
Q Consensus 255 ~~~~--~~~~v~l~r 267 (471)
.+.. ...++++.+
T Consensus 148 ~~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 148 RKPPAEKVMEIKLIK 162 (721)
T ss_pred cccccccceeeeeee
Confidence 6532 234566654
No 192
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.29 E-value=7.8e-07 Score=88.76 Aligned_cols=63 Identities=25% Similarity=0.460 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEE
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQV 265 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l 265 (471)
+++|..|.++|||++|||++||+|++|||+++.++ .++.+.++. ++++.|+|.|++ +..++++
T Consensus 257 gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~--~~~v~l~v~R~g--~~~~~~v 319 (325)
T 1lcy_A 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGR--ETLTLYV 319 (325)
T ss_dssp CEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETT--EEEEEEE
T ss_pred CeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC--CCeEEEEEEECC--EEEEEEE
Confidence 68999999999999999999999999999999975 677777764 578999999976 3344444
No 193
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.23 E-value=1.8e-06 Score=89.69 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=51.2
Q ss_pred eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhC-CCCCcEEEEEEEcCCC
Q 012084 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQ-GPSETFVTIEVKHGNC 257 (471)
Q Consensus 196 ~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~-g~~g~~v~l~v~r~~~ 257 (471)
.+++|..|.++|||++|||++||+|++|||+++.++ .++...+. ...|++++|+|.|+++
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 323 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK 323 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 368999999999999999999999999999999986 45555554 3578999999999764
No 194
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.06 E-value=7.1e-06 Score=85.48 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=51.5
Q ss_pred eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 196 ~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.+++|..|.++|||+++||++||+|++|||+++.++ .++.+.++. .+..+.|+|.|++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g 443 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGP 443 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETT
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECC
Confidence 368999999999999999999999999999999976 677777876 6788999999876
No 195
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.06 E-value=5.1e-07 Score=90.34 Aligned_cols=58 Identities=26% Similarity=0.504 Sum_probs=0.0
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCG 258 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~ 258 (471)
+++|..|.++|||++|||++||+|++|||+++..+ .++...++. |++++|+|.|+++.
T Consensus 255 g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~ 312 (332)
T 3num_A 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIKR--ESTLNMVVRRGNED 312 (332)
T ss_dssp --------------------------------------------------------------
T ss_pred ceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEE
Confidence 68899999999999999999999999999999876 456566643 78899999997643
No 196
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.03 E-value=9.2e-06 Score=84.26 Aligned_cols=57 Identities=23% Similarity=0.439 Sum_probs=50.1
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
+++|..|.++|||+++||++||+|++|||+++.++ .++.++++... ..+.|+|.|++
T Consensus 364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g 420 (436)
T 4a8c_A 364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGN 420 (436)
T ss_pred CEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECC
Confidence 68899999999999999999999999999999976 67777777644 48999999976
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.95 E-value=2.1e-06 Score=89.48 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=51.7
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCC-CCCcEEEEEEEcCCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQG-PSETFVTIEVKHGNC 257 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g-~~g~~v~l~v~r~~~ 257 (471)
+++|..|.++|||++|||++||+|++|||+++..+ .++..++.. ..|++++|+|.|++.
T Consensus 287 G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~ 346 (448)
T 1ky9_A 287 GAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK 346 (448)
T ss_dssp SEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred ceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 67899999999999999999999999999999987 566666654 578999999999763
No 198
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.88 E-value=2.1e-05 Score=86.66 Aligned_cols=73 Identities=32% Similarity=0.467 Sum_probs=59.4
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcC-CCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCC
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAG-VRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGN 256 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aG-l~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~ 256 (471)
.++|+.+....+ ..+++|..|.++|||+++| |++||+|++|||+++.+++..++..+++.. +..+.|+|.|+.
T Consensus 318 ~~lG~~i~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~-~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGED---GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccCC---CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence 467887754211 1368999999999999999 999999999999999998778888888754 677999997754
No 199
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=97.70 E-value=6.8e-05 Score=79.37 Aligned_cols=86 Identities=12% Similarity=0.172 Sum_probs=59.6
Q ss_pred ceeeeEEEEEeeCC--------CCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCH--------HHHHHhh-C
Q 012084 179 MSGIGINLREVPDA--------NGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA--------FEVSSLL-Q 241 (471)
Q Consensus 179 ~~giG~~~~~~~d~--------~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~--------~~~~~ll-~ 241 (471)
++.+|+.+..+.+. ....+++|..|.++|||+++ |++||+|++|||++|..... ..+..++ .
T Consensus 252 r~~LGv~~~~~~~~~~~~~~~l~~~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~ 330 (539)
T 4fln_A 252 YPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQ 330 (539)
T ss_dssp CCBCCEEEEECCCHHHHHHHTCSSSBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHT
T ss_pred eeecceEEEecCCHHHHHhcCCCCcCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHc
Confidence 45577777654210 11247899999999999876 99999999999999975321 1122233 3
Q ss_pred CCCCcEEEEEEEcCCCCCeeEEEE
Q 012084 242 GPSETFVTIEVKHGNCGPIESIQV 265 (471)
Q Consensus 242 g~~g~~v~l~v~r~~~~~~~~v~l 265 (471)
-.+|++|+|+|.|+++....++++
T Consensus 331 ~~~Gd~v~l~v~R~Gk~~~v~Vtl 354 (539)
T 4fln_A 331 KFAGDIAEIGIIRAGEHKKVQVVL 354 (539)
T ss_dssp SCTTCEEEEEEEETTEEEEEEEEC
T ss_pred CCCCCEEEEEEEECCEEEEEEEEE
Confidence 478999999999987544444444
No 200
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.55 E-value=1.1e-05 Score=83.95 Aligned_cols=58 Identities=19% Similarity=0.404 Sum_probs=0.0
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCC
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNC 257 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~ 257 (471)
+++|..|.++|||+++||++||+|++|||+++.++ .++.++++...+ .+.|+|.|++.
T Consensus 384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g~ 441 (448)
T 1ky9_A 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGDS 441 (448)
T ss_dssp -------------------------------------------------------------
T ss_pred eEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECCE
Confidence 57899999999999999999999999999999875 566677766555 88899988763
No 201
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.44 E-value=0.00018 Score=64.24 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=45.2
Q ss_pred eeeeEEEEEeeCCCCceEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEE
Q 012084 180 SGIGINLREVPDANGVVTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEV 252 (471)
Q Consensus 180 ~giG~~~~~~~d~~g~~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v 252 (471)
..+|+.+.. . +|..+.++|||+++||++||+|++|||+++.++....+...+. ..|..+.+++
T Consensus 100 ~~lG~~~~~--------g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~-r~g~~~~l~v 162 (166)
T 1w9e_A 100 GHVGFIFKN--------G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 162 (166)
T ss_dssp SCCSEEEET--------T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred CcEeEEEeC--------C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHh-hCCCEEEEEE
Confidence 356776641 2 6889999999999999999999999999999986555433332 1234444444
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.26 E-value=4.1e-05 Score=78.16 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=0.0
Q ss_pred EEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEc
Q 012084 199 KVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKH 254 (471)
Q Consensus 199 ~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r 254 (471)
+|..|.++|||+++||++||+|++|||+++.+++..++..+++. .+..+.|+|..
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p 372 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMP 372 (388)
T ss_dssp --------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEe
Confidence 68899999999999999999999999999987766777777764 45667777754
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=96.27 E-value=0.0046 Score=65.38 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=54.2
Q ss_pred eEEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCHHHHHHhhCCCCCcEEEEEEEcCCCCCeeEEEEeee
Q 012084 196 VTLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSAFEVSSLLQGPSETFVTIEVKHGNCGPIESIQVQRQ 268 (471)
Q Consensus 196 ~~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~~~~~~ll~g~~g~~v~l~v~r~~~~~~~~v~l~r~ 268 (471)
..++|..|.++++|..+|+++||+|++|||++|.++ .++.+++....+..+.|++..+ +.+.|.++
T Consensus 415 ~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~~~-----~~ivL~~~ 480 (539)
T 4fln_A 415 QIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFEDN-----YVAVLERE 480 (539)
T ss_dssp CCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEETTS-----CEEEEEHH
T ss_pred eEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEECCC-----EEEEEEHH
Confidence 368999999999999999999999999999999985 7888888777778888777532 23566654
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=90.36 E-value=0.93 Score=42.33 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=63.9
Q ss_pred CCeEEEEEeCc-hhhhHHHHHHHHHHHHHhcCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEe
Q 012084 286 TTSVGYMRLKE-FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIV 364 (471)
Q Consensus 286 ~~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~ 364 (471)
.++|+.|.+.. ++....+.+.++|+++.+.+++.+||.+ +-+||.+..+..+.+.+..
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~i-nspGG~v~~~~~i~~~i~~-------------------- 65 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIEL-DTPGGRADAMMNIVQRIQQ-------------------- 65 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEE-EBSCEEHHHHHHHHHHHHT--------------------
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEE-eCCCcCHHHHHHHHHHHHh--------------------
Confidence 35677777764 4555667888888888777899999977 4789998887777665431
Q ss_pred cCCCCCCCCCEEEEE---CCCCCChHHHHHHHHh
Q 012084 365 ADNSPLVTAPVIVLV---NNRTASASEIVASALH 395 (471)
Q Consensus 365 ~~~~~~~~~pi~VLv---d~~TaSaaE~fa~~lk 395 (471)
.++|++..+ ++..+|++-.++.+-.
T Consensus 66 ------~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 66 ------SKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp ------CSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred ------CCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 247899999 9999999999988765
No 205
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=84.61 E-value=1.2 Score=41.15 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=60.9
Q ss_pred CeEEEEEeCchhhhHHHHHHHHHHHHHhc-CCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEec
Q 012084 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (471)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (471)
++|.+|. ...+....+.+.+.|..+.+. +.+.++|.+ +-|||.+..+..+.+.+..
T Consensus 45 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~~--------------------- 101 (218)
T 1y7o_A 45 DRIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMNF--------------------- 101 (218)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 4565654 334445667888888877654 588999998 7789999988887765521
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHhc
Q 012084 366 DNSPLVTAPVIVLVNNRTASASEIVASALHD 396 (471)
Q Consensus 366 ~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk~ 396 (471)
.++|+++.+++.++|++-+++.+-..
T Consensus 102 -----~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 102 -----IKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred -----cCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 23689999999999999998877653
No 206
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=79.44 E-value=2.2 Score=38.50 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=59.9
Q ss_pred CeEEEEEeCchhhhHHHHHHHHHHHHHhc-CCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEec
Q 012084 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (471)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (471)
.+|.||.=. .+....+.+.+.|..+... +.+.++|.+ +-|||++..+..|.+.+..
T Consensus 26 ~rii~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------- 82 (193)
T 1yg6_A 26 ERVIFLTGQ-VEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQF--------------------- 82 (193)
T ss_dssp TTEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-EcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 456555322 3344567788888777543 578899888 7789999998888876632
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHhc
Q 012084 366 DNSPLVTAPVIVLVNNRTASASEIVASALHD 396 (471)
Q Consensus 366 ~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk~ 396 (471)
.+.|+++.+++.++|++-+++.+-..
T Consensus 83 -----~~~pV~~~v~g~AaS~g~~Ia~ag~~ 108 (193)
T 1yg6_A 83 -----IKPDVSTICMGQAASMGAFLLTAGAK 108 (193)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSCT
T ss_pred -----cCCCEEEEEeeeHHHHHHHHHHCCCc
Confidence 12589999999999999999887543
No 207
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=79.43 E-value=2.2 Score=39.03 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHh-cCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEecCCCCCCCCCEEE
Q 012084 299 ALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIV 377 (471)
Q Consensus 299 ~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pi~V 377 (471)
....+.+.+.|..+.+ .+.++++|.+ +-|||++..+..+.+.+.. .++|+++
T Consensus 38 ~~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------------~~~pV~~ 90 (208)
T 2cby_A 38 DEIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVL--------------------------APCDIAT 90 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------CSSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEE
Confidence 3456778888877764 3588999888 7789999888888876532 1358999
Q ss_pred EECCCCCChHHHHHHHHhc
Q 012084 378 LVNNRTASASEIVASALHD 396 (471)
Q Consensus 378 Lvd~~TaSaaE~fa~~lk~ 396 (471)
.+++.++|++-+++++-..
T Consensus 91 ~v~g~AaS~g~~Ia~agd~ 109 (208)
T 2cby_A 91 YAMGMAASMGEFLLAAGTK 109 (208)
T ss_dssp EEEEEEETHHHHHHHTSCT
T ss_pred EECcEeHHHHHHHHhCCCc
Confidence 9999999999999987653
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=75.33 E-value=3 Score=38.35 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHHHHhcCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEecCCCCCCCCCEEEE
Q 012084 299 ALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVL 378 (471)
Q Consensus 299 ~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pi~VL 378 (471)
....+.+...|..+...+.+.++|.+ +-|||++..+..|.+.+.. .+.|+++.
T Consensus 50 ~~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~--------------------------~~~pV~t~ 102 (215)
T 2f6i_A 50 KKTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNY--------------------------IKSDIQTI 102 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------SSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEE
Confidence 34567788888877655558888888 7789999998888876632 12478889
Q ss_pred ECCCCCChHHHHHHHHhc
Q 012084 379 VNNRTASASEIVASALHD 396 (471)
Q Consensus 379 vd~~TaSaaE~fa~~lk~ 396 (471)
+.+.++|++-+++++-..
T Consensus 103 v~g~AAS~g~~Ia~agd~ 120 (215)
T 2f6i_A 103 SFGLVASMASVILASGKK 120 (215)
T ss_dssp EEEEECHHHHHHHHTSCT
T ss_pred EeeEhHhHHHHHHHcCCc
Confidence 999999999999887643
No 209
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=70.26 E-value=5.2 Score=36.43 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=57.3
Q ss_pred CeEEEEEeCchhhhHHHHHHHHHHHHHhc-CCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEec
Q 012084 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (471)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (471)
++|-||.= ..+....+.+...|..+... ..+.++|.+ +-|||++..+..+.+.+..
T Consensus 27 ~riI~l~g-~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~--------------------- 83 (203)
T 3qwd_A 27 DRIIMLGS-QIDDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQH--------------------- 83 (203)
T ss_dssp TTEEEECS-CBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcC-EECHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHH---------------------
Confidence 45555532 23344567788888877654 478888887 5789999988888876531
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHh
Q 012084 366 DNSPLVTAPVIVLVNNRTASASEIVASALH 395 (471)
Q Consensus 366 ~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk 395 (471)
.+.|+++.+.+.++|++-+++++-.
T Consensus 84 -----~~~~V~t~~~G~AaSag~~i~~ag~ 108 (203)
T 3qwd_A 84 -----IKPDVQTICIGMAASMGSFLLAAGA 108 (203)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSC
T ss_pred -----hcCCcEEEEeeeehhHHHHHHHcCC
Confidence 1358999999999999998886543
No 210
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=67.32 E-value=6.5 Score=35.69 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=58.2
Q ss_pred CeEEEEEeCchhhhHHHHHHHHHHHHHhc-CCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEec
Q 012084 287 TSVGYMRLKEFNALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (471)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (471)
++|-||.=. .+....+.+...|..+... ..+.++|-+ +-|||++..+..+.+.+..
T Consensus 30 ~riI~l~g~-I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~--------------------- 86 (201)
T 3p2l_A 30 ERIVFLNGE-VNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQF--------------------- 86 (201)
T ss_dssp TTEEEEESC-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHH---------------------
Confidence 456565432 2344567777877777654 478888888 7789999988888876531
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHh
Q 012084 366 DNSPLVTAPVIVLVNNRTASASEIVASALH 395 (471)
Q Consensus 366 ~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk 395 (471)
.+.|+++.+.+.++|++-+++.+-.
T Consensus 87 -----~~~~v~t~~~G~AaS~g~~i~~ag~ 111 (201)
T 3p2l_A 87 -----IKPDVSTICIGLAASMGSLLLAGGA 111 (201)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSS
T ss_pred -----hCCCeEEEEcCEehhHHHHHHHcCc
Confidence 1357899999999999998887644
No 211
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=60.56 E-value=9.2 Score=36.54 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=56.9
Q ss_pred CeEEEEEeCchhhhHHHHHHHHHHHHHh-cCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEec
Q 012084 287 TSVGYMRLKEFNALARKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVA 365 (471)
Q Consensus 287 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~ 365 (471)
++|-+|.=. .+....+.+...|..+.. .+.+.++|.+ +-|||++..+..|.+.+..
T Consensus 82 erII~l~G~-I~d~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~--------------------- 138 (277)
T 1tg6_A 82 ERIVCVMGP-IDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQY--------------------- 138 (277)
T ss_dssp TTEEEEESS-BCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CcEEEEcCE-ECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh---------------------
Confidence 444444422 233355667777776654 3578888888 7789999988888876531
Q ss_pred CCCCCCCCCEEEEECCCCCChHHHHHHHHh
Q 012084 366 DNSPLVTAPVIVLVNNRTASASEIVASALH 395 (471)
Q Consensus 366 ~~~~~~~~pi~VLvd~~TaSaaE~fa~~lk 395 (471)
.+.||++.+.+..+|++-+++++-.
T Consensus 139 -----~k~pV~t~v~G~AASaG~~Ia~Agd 163 (277)
T 1tg6_A 139 -----ILNPICTWCVGQAASMGSLLLAAGT 163 (277)
T ss_dssp -----SCSCEEEEEEEEEETHHHHHHHTSC
T ss_pred -----cCCCEEEEEccEeHHHHHHHHHCCC
Confidence 1258999999999999998887754
No 212
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=55.16 E-value=14 Score=35.49 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCChhhHHHHHHHHhhc---cccChHHHHHHHHHHHHhc-CCCceee
Q 012084 102 EGIVEEAWQIVNDSFLDTGRHRWTPQNWQRKREDILSS---SIQTRSKAHGIIKRMLASL-GDPYTRF 165 (471)
Q Consensus 102 ~~~f~~vw~~v~~~y~d~~~~~~~~~dW~~~~e~~~~~---~~~~~~~~~~~i~~ml~~L-~D~Ht~~ 165 (471)
..+++.+|..++++|.++. + -.++.+.+... .+.+.+++...+.+++..+ +|+|..+
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~-~------~~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v 65 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSE-R------IPTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVL 65 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGG-G------HHHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HHHHHHHHHHHHHhCCCHH-H------HHHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEE
Confidence 4579999999999999874 1 12444443222 3578889999999999995 9999865
No 213
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=48.16 E-value=39 Score=28.03 Aligned_cols=49 Identities=6% Similarity=0.107 Sum_probs=38.3
Q ss_pred CCeEEEEEeCc---hhhhHHHHHHHHHHHHHhcCCcEEEEeccCCCCccHHHH
Q 012084 286 TTSVGYMRLKE---FNALARKDLVTAMKRLQDMGASYFILDLRDNLGGLVQAG 335 (471)
Q Consensus 286 ~~~igYi~i~s---F~~~~~~~l~~~l~~l~~~~~~~LIIDLR~N~GG~~~~~ 335 (471)
+++|.|+++.. ++....+.+...+.++...+.-.+++|+|.. +.....+
T Consensus 18 ~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~-~~~s~~A 69 (124)
T 3bl4_A 18 GDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT-ADVSRGA 69 (124)
T ss_dssp TTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS-THHHHHH
T ss_pred CCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc-cCCCHHH
Confidence 58899999987 6666777788888888877788999999998 4444443
No 214
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=36.55 E-value=22 Score=32.92 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccCcccceeEecCCCCCCCCCEEEEEC
Q 012084 302 RKDLVTAMKRLQD-MGASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRDPQYQKTIVADNSPLVTAPVIVLVN 380 (471)
Q Consensus 302 ~~~l~~~l~~l~~-~~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pi~VLvd 380 (471)
.+++..+++++.+ ..++++||..-. +||.+..+..+...+.. +.. ...+|++..++
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~~------------------~~~----~~~kPVia~v~ 87 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNS-PGGGVYESAEIHKKLEE------------------IKK----ETKKPIYVSMG 87 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE-CCBCHHHHHHHHHHHHH------------------HHH----HHCCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecC-CCCCHHHHHHHHHHHHH------------------HHH----hCCCeEEEEEC
Confidence 4678888887764 468999998864 78887766555443321 000 02479999999
Q ss_pred CCCCChHHHHHHH
Q 012084 381 NRTASASEIVASA 393 (471)
Q Consensus 381 ~~TaSaaE~fa~~ 393 (471)
+.++|++=.++.+
T Consensus 88 g~a~~gG~~lA~a 100 (240)
T 3rst_A 88 SMAASGGYYISTA 100 (240)
T ss_dssp EEEETHHHHHHTT
T ss_pred CeehHhHHHHHHh
Confidence 9999998766654
No 215
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=30.70 E-value=52 Score=30.15 Aligned_cols=51 Identities=35% Similarity=0.500 Sum_probs=35.7
Q ss_pred EEEEEEEcCCCchhhcCCCCCCEEEEECCEEcCCCCH---HHHHHhhCCCCCcEEEEEEE
Q 012084 197 TLKVLGLILDGPAHSAGVRQGDEVLAVNGVDVRGKSA---FEVSSLLQGPSETFVTIEVK 253 (471)
Q Consensus 197 ~~~V~~v~~~spA~~aGl~~GD~Il~InG~~v~~~~~---~~~~~ll~g~~g~~v~l~v~ 253 (471)
++.|.. +++.|++.|..++++||.++.+-.. .++...+.|+.+..+.+..-
T Consensus 46 ~~~v~~------~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f 99 (219)
T 2j3t_D 46 RVLVAF------GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFG 99 (219)
T ss_dssp SEEEEE------CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEE
T ss_pred eeEEee------cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEec
Confidence 566653 3467999999999999999987422 24666677776666555443
No 216
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=26.96 E-value=18 Score=38.28 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=56.0
Q ss_pred CCeEEEEEeCch--------hhhHHHHHHHHHHHHHhc-CCcEEEEeccCCCCccHHHHHHHHhhcccCCceEEEEeccC
Q 012084 286 TTSVGYMRLKEF--------NALARKDLVTAMKRLQDM-GASYFILDLRDNLGGLVQAGIEIAKLFLNEGETITYTVGRD 356 (471)
Q Consensus 286 ~~~igYi~i~sF--------~~~~~~~l~~~l~~l~~~-~~~~LIIDLR~N~GG~~~~~~~la~~f~~~~~~~~~~~~r~ 356 (471)
.++|+.|.+..- +....+++.++|+++.+. +++++||..-. +||++.....+...+..
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~------------ 366 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAA------------ 366 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-EEECHHHHHHHHHHHHH------------
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-CCCCHHHHHHHHHHHHH------------
Confidence 456888877542 122357788888887654 68888887654 68887765444332210
Q ss_pred cccceeEecCCCCCCCCCEEEEECCCCCChHHHHHHHH
Q 012084 357 PQYQKTIVADNSPLVTAPVIVLVNNRTASASEIVASAL 394 (471)
Q Consensus 357 ~~~~~~~~~~~~~~~~~pi~VLvd~~TaSaaE~fa~~l 394 (471)
+. ...+|+++.+++.++|++=.++.+.
T Consensus 367 ------l~-----~~~kPVia~v~g~AasgG~~iA~aa 393 (593)
T 3bf0_A 367 ------AR-----AAGKPVVVSMGGMAASGGYWISTPA 393 (593)
T ss_dssp ------HH-----HTTCCEEEEEEEEEETHHHHTTTTC
T ss_pred ------HH-----hCCCCEEEEECCChHHHHHHHHHhC
Confidence 00 1247999999999999997777654
No 217
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=25.72 E-value=88 Score=25.28 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=37.8
Q ss_pred CeEEEEEeCc-hhhhHHHHHHHHHHHHHhc---CCcEEEEeccCCCCccH---HHHHHHHhhcccCCceEEE
Q 012084 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDM---GASYFILDLRDNLGGLV---QAGIEIAKLFLNEGETITY 351 (471)
Q Consensus 287 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~---~~~~LIIDLR~N~GG~~---~~~~~la~~f~~~~~~~~~ 351 (471)
+++..+++.. +.-.+.+.|.+.+.++... +.+.+|||+++=.-=+. .....+...+-..+..+..
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 85 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAM 85 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4667777753 2334567788888776544 57899999987543222 1223344445455544433
No 218
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=23.82 E-value=90 Score=24.22 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=27.9
Q ss_pred CeEEEEEeCc-hhhhHHHHHHHHHHHHHhcC-CcEEEEeccCCCCccH
Q 012084 287 TSVGYMRLKE-FNALARKDLVTAMKRLQDMG-ASYFILDLRDNLGGLV 332 (471)
Q Consensus 287 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIIDLR~N~GG~~ 332 (471)
+++..+++.. +.......+.+.+.++...+ .+.+|||+++=.-=+.
T Consensus 11 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDs 58 (116)
T 1th8_B 11 QDVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDS 58 (116)
T ss_dssp TTEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECH
T ss_pred CCEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEcc
Confidence 3445555542 33334567777777665544 7889999987654443
No 219
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=20.59 E-value=89 Score=28.20 Aligned_cols=81 Identities=11% Similarity=0.137 Sum_probs=55.4
Q ss_pred CCeEEEEEeCchhhhHHHHHHHHHHHHHhcC-CcEEEEeccCCCC----------ccHHHHHHHHhhcccCCceEEEEec
Q 012084 286 TTSVGYMRLKEFNALARKDLVTAMKRLQDMG-ASYFILDLRDNLG----------GLVQAGIEIAKLFLNEGETITYTVG 354 (471)
Q Consensus 286 ~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~-~~~LIIDLR~N~G----------G~~~~~~~la~~f~~~~~~~~~~~~ 354 (471)
.++|-||.-+ .+....+.+...|..|...+ .+.+.|=+ +-|| |++..+..|.+.+-.
T Consensus 27 ~~Riifl~~~-I~d~~a~~iiaqLl~L~~ed~~k~I~lyI-NSpG~~~~~~~~~~G~v~aglaIyd~m~~---------- 94 (205)
T 4gm2_A 27 SKRIIFLSSP-IYPHISEQIISQLLYLEYESKRKPIHLYI-NSTGDIDNNKIINLNGITDVISIVDVINY---------- 94 (205)
T ss_dssp TTTEEEECSC-CCHHHHHHHHHHHHHHHHHCTTCCEEEEE-EECTTEETTEESCTTHHHHHHHHHHHHHH----------
T ss_pred cCCEEEECCE-EcHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCCcCCCCCCCCHHHHHHHHHHHHh----------
Confidence 3566665422 23345677777777776543 56666655 5678 999988888875521
Q ss_pred cCcccceeEecCCCCCCCCCEEEEECCCCCChHHHHHHHH
Q 012084 355 RDPQYQKTIVADNSPLVTAPVIVLVNNRTASASEIVASAL 394 (471)
Q Consensus 355 r~~~~~~~~~~~~~~~~~~pi~VLvd~~TaSaaE~fa~~l 394 (471)
.+.||..++.+..+|+|-+++++=
T Consensus 95 ----------------~~~~V~t~~~G~AaS~as~il~aG 118 (205)
T 4gm2_A 95 ----------------ISSDVYTYCLGKAYGIACILASSG 118 (205)
T ss_dssp ----------------SSSCEEEEEEEEEETHHHHHHTTS
T ss_pred ----------------cCCCEEEEEEeeehhHHHHHHhcC
Confidence 235899999999999999887653
Done!