Query 012085
Match_columns 471
No_of_seqs 350 out of 2100
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:28:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0458 Elongation factor 1 al 100.0 1.6E-35 3.5E-40 310.9 22.5 211 260-471 171-382 (603)
2 COG5256 TEF1 Translation elong 100.0 6.9E-34 1.5E-38 289.9 18.2 205 263-471 4-208 (428)
3 PTZ00141 elongation factor 1- 100.0 5.4E-28 1.2E-32 256.3 19.0 200 263-463 4-205 (446)
4 PLN00043 elongation factor 1-a 100.0 8.1E-28 1.8E-32 254.9 18.6 201 263-464 4-206 (447)
5 PRK12317 elongation factor 1-a 100.0 3E-27 6.6E-32 249.2 19.3 194 263-464 3-198 (425)
6 cd01883 EF1_alpha Eukaryotic e 99.9 9.3E-27 2E-31 224.5 17.0 197 268-465 1-199 (219)
7 TIGR02034 CysN sulfate adenyly 99.9 1.4E-26 3E-31 243.0 17.1 187 267-463 1-189 (406)
8 cd04166 CysN_ATPS CysN_ATPS su 99.9 2.8E-26 6E-31 219.4 17.7 187 268-464 1-187 (208)
9 TIGR00483 EF-1_alpha translati 99.9 2.5E-26 5.5E-31 242.3 19.1 198 263-465 4-201 (426)
10 PRK05124 cysN sulfate adenylyl 99.9 1.5E-26 3.3E-31 246.9 16.9 204 248-463 12-217 (474)
11 COG2895 CysN GTPases - Sulfate 99.9 4.3E-26 9.4E-31 228.1 15.6 193 263-465 3-197 (431)
12 cd01884 EF_Tu EF-Tu subfamily. 99.9 9.1E-25 2E-29 207.7 18.3 172 266-461 2-173 (195)
13 PRK05506 bifunctional sulfate 99.9 6.1E-25 1.3E-29 242.4 17.2 191 264-464 22-214 (632)
14 PF00009 GTP_EFTU: Elongation 99.9 9.1E-25 2E-29 205.2 13.1 174 265-463 2-179 (188)
15 CHL00071 tufA elongation facto 99.9 2.6E-23 5.7E-28 218.5 17.8 179 261-463 7-185 (409)
16 PRK12736 elongation factor Tu; 99.9 6E-23 1.3E-27 214.8 17.1 173 261-457 7-179 (394)
17 PLN03126 Elongation factor Tu; 99.9 7.4E-23 1.6E-27 218.4 17.0 174 263-460 78-251 (478)
18 PRK12735 elongation factor Tu; 99.9 1.2E-22 2.6E-27 212.6 18.0 176 261-460 7-182 (396)
19 TIGR00485 EF-Tu translation el 99.9 1.6E-22 3.5E-27 211.5 17.0 171 263-457 9-179 (394)
20 PRK00049 elongation factor Tu; 99.9 4.1E-22 8.8E-27 208.6 18.5 174 261-458 7-180 (396)
21 cd04171 SelB SelB subfamily. 99.9 6.8E-22 1.5E-26 178.3 15.3 157 268-464 2-159 (164)
22 PLN03127 Elongation factor Tu; 99.9 3.5E-21 7.6E-26 204.3 18.3 172 262-458 57-232 (447)
23 KOG0459 Polypeptide release fa 99.9 7.7E-22 1.7E-26 200.2 11.0 206 263-471 76-284 (501)
24 cd01891 TypA_BipA TypA (tyrosi 99.9 8.2E-21 1.8E-25 178.9 16.2 170 266-462 2-173 (194)
25 TIGR00475 selB selenocysteine- 99.9 7.3E-21 1.6E-25 207.9 16.8 158 267-463 1-158 (581)
26 cd01890 LepA LepA subfamily. 99.9 8.6E-21 1.9E-25 174.7 14.3 165 267-464 1-170 (179)
27 cd01888 eIF2_gamma eIF2-gamma 99.8 6.1E-21 1.3E-25 181.9 13.3 159 267-464 1-192 (203)
28 cd01889 SelB_euk SelB subfamil 99.8 7.6E-21 1.6E-25 178.9 13.7 162 267-463 1-178 (192)
29 cd00881 GTP_translation_factor 99.8 1.3E-20 2.8E-25 173.8 14.1 171 268-464 1-180 (189)
30 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-20 3.4E-25 206.1 16.1 157 268-464 2-159 (614)
31 TIGR03680 eif2g_arch translati 99.8 2E-20 4.4E-25 196.5 13.1 161 264-463 2-188 (406)
32 TIGR01394 TypA_BipA GTP-bindin 99.8 4.5E-20 9.8E-25 201.7 15.6 166 267-459 2-169 (594)
33 PTZ00327 eukaryotic translatio 99.8 2.5E-20 5.4E-25 198.0 12.9 163 262-463 30-225 (460)
34 cd01885 EF2 EF2 (for archaea a 99.8 4.4E-20 9.6E-25 179.0 13.3 169 267-459 1-200 (222)
35 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.5E-20 1.2E-24 178.6 13.0 168 268-463 1-215 (224)
36 KOG0462 Elongation factor-type 99.8 3.5E-20 7.6E-25 194.1 12.3 169 264-465 58-229 (650)
37 COG1160 Predicted GTPases [Gen 99.8 8.4E-20 1.8E-24 189.5 14.7 159 264-465 176-345 (444)
38 cd04160 Arfrp1 Arfrp1 subfamil 99.8 5.9E-20 1.3E-24 167.1 11.0 159 268-464 1-162 (167)
39 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.7E-19 3.6E-24 163.8 13.6 153 268-464 2-159 (168)
40 PRK05306 infB translation init 99.8 1.9E-19 4E-24 201.3 15.9 157 263-465 287-446 (787)
41 cd01886 EF-G Elongation factor 99.8 1.9E-19 4.1E-24 179.5 14.1 167 268-463 1-168 (270)
42 PRK04000 translation initiatio 99.8 1.2E-19 2.6E-24 191.0 13.2 164 262-464 5-194 (411)
43 cd04167 Snu114p Snu114p subfam 99.8 3.2E-19 6.9E-24 171.0 14.8 172 267-459 1-191 (213)
44 COG0050 TufB GTPases - transla 99.8 1.9E-19 4.2E-24 176.8 13.3 171 262-456 8-178 (394)
45 TIGR00487 IF-2 translation ini 99.8 3.2E-19 6.9E-24 194.7 16.3 156 264-465 85-244 (587)
46 PRK10218 GTP-binding protein; 99.8 6.2E-19 1.3E-23 192.9 18.4 170 265-461 4-175 (607)
47 TIGR01393 lepA GTP-binding pro 99.8 2.1E-19 4.6E-24 196.7 14.0 167 265-464 2-173 (595)
48 PF02421 FeoB_N: Ferrous iron 99.8 4.9E-20 1.1E-24 169.2 7.4 145 267-463 1-153 (156)
49 cd04145 M_R_Ras_like M-Ras/R-R 99.8 4.6E-19 1E-23 160.2 13.6 154 266-465 2-158 (164)
50 PRK05433 GTP-binding protein L 99.8 2E-19 4.4E-24 197.0 13.3 168 264-464 5-177 (600)
51 cd04154 Arl2 Arl2 subfamily. 99.8 2.7E-19 5.8E-24 164.9 11.8 154 264-464 12-168 (173)
52 cd01864 Rab19 Rab19 subfamily. 99.8 8.3E-19 1.8E-23 159.8 14.8 156 265-465 2-160 (165)
53 COG0532 InfB Translation initi 99.8 3.3E-19 7.3E-24 187.8 13.3 158 265-465 4-164 (509)
54 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 6E-19 1.3E-23 167.1 13.5 155 267-465 1-162 (201)
55 cd04121 Rab40 Rab40 subfamily. 99.8 1.2E-18 2.6E-23 164.8 15.3 157 265-465 5-161 (189)
56 cd04149 Arf6 Arf6 subfamily. 99.8 4E-19 8.7E-24 164.0 11.4 153 265-464 8-163 (168)
57 cd04122 Rab14 Rab14 subfamily. 99.8 1.6E-18 3.6E-23 158.2 15.2 154 267-465 3-158 (166)
58 cd04119 RJL RJL (RabJ-Like) su 99.8 9E-19 2E-23 158.2 13.3 155 267-465 1-161 (168)
59 cd04138 H_N_K_Ras_like H-Ras/N 99.8 8.1E-19 1.7E-23 157.6 12.9 152 267-465 2-156 (162)
60 COG1159 Era GTPase [General fu 99.8 6.8E-19 1.5E-23 174.4 13.4 152 264-462 4-163 (298)
61 KOG0084 GTPase Rab1/YPT1, smal 99.8 5.1E-19 1.1E-23 165.2 11.6 158 263-465 6-166 (205)
62 TIGR03594 GTPase_EngA ribosome 99.8 9.4E-19 2E-23 184.2 15.2 158 264-465 170-338 (429)
63 cd01895 EngA2 EngA2 subfamily. 99.8 1.4E-18 3E-23 157.0 14.1 157 266-465 2-169 (174)
64 smart00173 RAS Ras subfamily o 99.8 1E-18 2.2E-23 158.5 12.9 153 267-465 1-156 (164)
65 cd04136 Rap_like Rap-like subf 99.8 1.1E-18 2.4E-23 157.6 12.7 155 267-464 2-156 (163)
66 cd04124 RabL2 RabL2 subfamily. 99.8 3.2E-18 7E-23 156.1 15.8 150 267-465 1-152 (161)
67 COG1160 Predicted GTPases [Gen 99.8 3.7E-19 8E-24 184.8 10.8 146 267-464 4-158 (444)
68 cd04175 Rap1 Rap1 subgroup. T 99.8 1.4E-18 3.1E-23 157.9 13.2 153 267-465 2-157 (164)
69 cd01861 Rab6 Rab6 subfamily. 99.8 2.5E-18 5.5E-23 155.2 14.6 152 267-465 1-156 (161)
70 cd04116 Rab9 Rab9 subfamily. 99.8 1.2E-18 2.7E-23 159.2 12.6 159 265-465 4-165 (170)
71 KOG0078 GTP-binding protein SE 99.8 9.7E-19 2.1E-23 165.1 12.1 155 264-464 10-167 (207)
72 TIGR03598 GTPase_YsxC ribosome 99.8 3.3E-18 7.2E-23 159.1 15.7 151 264-460 16-179 (179)
73 cd04150 Arf1_5_like Arf1-Arf5- 99.8 9.1E-19 2E-23 159.9 11.6 152 267-464 1-154 (159)
74 cd04157 Arl6 Arl6 subfamily. 99.8 9E-19 2E-23 158.0 11.5 152 268-464 1-157 (162)
75 cd04120 Rab12 Rab12 subfamily. 99.8 2.7E-18 5.9E-23 164.1 15.2 152 268-464 2-156 (202)
76 cd04106 Rab23_lke Rab23-like s 99.8 3.1E-18 6.8E-23 154.7 14.8 153 267-464 1-156 (162)
77 KOG0092 GTPase Rab5/YPT51 and 99.8 1.5E-18 3.4E-23 161.4 12.9 157 264-465 3-161 (200)
78 cd01865 Rab3 Rab3 subfamily. 99.8 3.2E-18 6.9E-23 156.4 14.9 154 267-465 2-157 (165)
79 cd04127 Rab27A Rab27a subfamil 99.8 1.7E-18 3.6E-23 159.8 12.9 156 265-465 3-171 (180)
80 cd01867 Rab8_Rab10_Rab13_like 99.8 3.9E-18 8.4E-23 156.1 15.1 155 265-465 2-159 (167)
81 PLN00223 ADP-ribosylation fact 99.8 1.8E-18 3.9E-23 161.9 13.0 155 264-464 15-171 (181)
82 KOG0460 Mitochondrial translat 99.8 2E-18 4.4E-23 172.4 13.9 169 262-454 50-218 (449)
83 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 4.5E-18 9.7E-23 155.0 15.0 154 266-465 2-158 (166)
84 PTZ00369 Ras-like protein; Pro 99.8 2.7E-18 5.9E-23 161.1 13.9 155 264-464 3-160 (189)
85 cd01866 Rab2 Rab2 subfamily. 99.8 4.9E-18 1.1E-22 155.8 15.1 154 266-465 4-160 (168)
86 CHL00189 infB translation init 99.8 1.1E-18 2.3E-23 193.7 12.7 157 263-465 241-404 (742)
87 PRK15494 era GTPase Era; Provi 99.8 2.5E-18 5.3E-23 176.7 14.5 152 264-464 50-209 (339)
88 cd04176 Rap2 Rap2 subgroup. T 99.8 2.4E-18 5.2E-23 156.1 12.8 152 267-464 2-156 (163)
89 cd04151 Arl1 Arl1 subfamily. 99.8 1.8E-18 3.9E-23 156.7 11.9 151 268-465 1-154 (158)
90 cd01862 Rab7 Rab7 subfamily. 99.8 5.7E-18 1.2E-22 154.3 15.2 155 267-465 1-161 (172)
91 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 3.4E-18 7.4E-23 159.4 13.7 156 264-463 20-177 (221)
92 PRK00093 GTP-binding protein D 99.8 3.3E-18 7.2E-23 180.6 15.4 156 265-465 172-338 (435)
93 KOG1145 Mitochondrial translat 99.8 1.8E-18 4E-23 181.2 13.1 156 264-462 151-307 (683)
94 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.9E-18 6.4E-23 158.8 13.2 153 266-465 2-158 (172)
95 COG0481 LepA Membrane GTPase L 99.8 1.2E-18 2.6E-23 180.2 11.5 168 263-463 6-178 (603)
96 cd04110 Rab35 Rab35 subfamily. 99.8 7.7E-18 1.7E-22 159.6 16.0 157 265-465 5-161 (199)
97 cd01868 Rab11_like Rab11-like. 99.8 7.3E-18 1.6E-22 153.2 15.2 154 266-464 3-158 (165)
98 KOG0394 Ras-related GTPase [Ge 99.8 1.4E-18 3.1E-23 160.5 10.5 161 264-465 7-172 (210)
99 TIGR00436 era GTP-binding prot 99.8 3.7E-18 8.1E-23 169.8 14.2 147 268-463 2-156 (270)
100 smart00177 ARF ARF-like small 99.8 2.4E-18 5.2E-23 159.7 12.0 154 265-464 12-167 (175)
101 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 5.3E-18 1.1E-22 156.8 14.2 156 268-465 2-159 (170)
102 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.3E-18 7E-23 158.4 12.6 152 266-464 15-169 (174)
103 cd04113 Rab4 Rab4 subfamily. 99.8 6.8E-18 1.5E-22 152.8 14.3 153 267-465 1-156 (161)
104 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.5E-18 1.4E-22 157.1 14.5 158 267-465 2-169 (175)
105 PLN03118 Rab family protein; P 99.8 7.9E-18 1.7E-22 160.8 15.1 156 264-465 12-171 (211)
106 PRK00007 elongation factor G; 99.8 2.5E-18 5.5E-23 191.7 13.5 171 264-463 8-179 (693)
107 cd04112 Rab26 Rab26 subfamily. 99.8 7.3E-18 1.6E-22 158.5 14.5 154 267-465 1-157 (191)
108 cd04169 RF3 RF3 subfamily. Pe 99.8 8.5E-18 1.8E-22 167.4 15.8 150 266-436 2-151 (267)
109 cd00877 Ran Ran (Ras-related n 99.8 8.3E-18 1.8E-22 154.6 14.5 152 267-465 1-153 (166)
110 cd01863 Rab18 Rab18 subfamily. 99.8 4.2E-18 9.1E-23 154.0 12.3 152 267-465 1-156 (161)
111 cd04168 TetM_like Tet(M)-like 99.8 5.2E-18 1.1E-22 166.1 13.7 131 268-420 1-131 (237)
112 cd01860 Rab5_related Rab5-rela 99.8 1.2E-17 2.6E-22 151.0 14.9 153 267-464 2-156 (163)
113 PRK04004 translation initiatio 99.8 6.4E-18 1.4E-22 184.8 15.2 178 264-463 4-210 (586)
114 cd04109 Rab28 Rab28 subfamily. 99.8 8.1E-18 1.8E-22 161.4 14.2 154 267-465 1-160 (215)
115 cd04140 ARHI_like ARHI subfami 99.8 1.3E-17 2.8E-22 152.3 14.9 152 267-465 2-159 (165)
116 cd04158 ARD1 ARD1 subfamily. 99.8 3.4E-18 7.3E-23 157.4 11.1 151 268-464 1-154 (169)
117 cd04118 Rab24 Rab24 subfamily. 99.8 1.1E-17 2.3E-22 156.8 14.6 158 267-465 1-160 (193)
118 smart00175 RAB Rab subfamily o 99.8 1.4E-17 3E-22 150.3 14.6 154 267-464 1-155 (164)
119 cd04115 Rab33B_Rab33A Rab33B/R 99.8 8.2E-18 1.8E-22 154.6 13.2 154 266-465 2-163 (170)
120 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 7.1E-18 1.5E-22 157.6 13.0 160 265-464 2-163 (183)
121 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.9E-17 4E-22 155.3 15.8 157 267-465 1-160 (182)
122 TIGR00491 aIF-2 translation in 99.8 6.7E-18 1.4E-22 184.3 14.6 159 265-463 3-208 (590)
123 cd04156 ARLTS1 ARLTS1 subfamil 99.8 4.9E-18 1.1E-22 153.4 11.3 153 268-465 1-156 (160)
124 PLN03071 GTP-binding nuclear p 99.8 1.4E-17 3.1E-22 160.7 15.3 154 264-464 11-165 (219)
125 PTZ00133 ADP-ribosylation fact 99.8 8E-18 1.7E-22 157.5 12.7 154 265-464 16-171 (182)
126 cd01894 EngA1 EngA1 subfamily. 99.7 6.7E-18 1.5E-22 150.8 11.4 144 270-465 1-152 (157)
127 cd04177 RSR1 RSR1 subgroup. R 99.7 1.3E-17 2.8E-22 152.8 13.5 157 267-465 2-158 (168)
128 cd01875 RhoG RhoG subfamily. 99.7 2.5E-17 5.5E-22 155.2 15.8 159 265-465 2-171 (191)
129 cd04142 RRP22 RRP22 subfamily. 99.7 1.1E-17 2.4E-22 159.1 13.4 155 267-465 1-168 (198)
130 cd04144 Ras2 Ras2 subfamily. 99.7 8.4E-18 1.8E-22 157.9 12.2 155 268-465 1-157 (190)
131 cd00878 Arf_Arl Arf (ADP-ribos 99.7 6.5E-18 1.4E-22 152.5 11.0 150 268-464 1-153 (158)
132 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-17 2.7E-22 150.4 12.9 153 267-465 1-156 (164)
133 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2E-17 4.4E-22 155.4 14.6 162 264-465 3-174 (182)
134 COG5257 GCD11 Translation init 99.7 3.5E-18 7.6E-23 169.7 9.7 161 264-463 8-194 (415)
135 cd00154 Rab Rab family. Rab G 99.7 2.8E-17 6.1E-22 145.8 14.7 153 267-464 1-155 (159)
136 cd01898 Obg Obg subfamily. Th 99.7 9.3E-18 2E-22 152.8 11.7 150 268-464 2-164 (170)
137 cd04126 Rab20 Rab20 subfamily. 99.7 1.9E-17 4.2E-22 160.4 14.6 158 267-465 1-184 (220)
138 cd01897 NOG NOG1 is a nucleola 99.7 2.3E-17 4.9E-22 150.2 14.1 150 267-464 1-161 (168)
139 TIGR00484 EF-G translation elo 99.7 1.3E-17 2.9E-22 185.9 15.1 165 264-457 8-172 (689)
140 cd04132 Rho4_like Rho4-like su 99.7 1.8E-17 3.9E-22 154.2 13.5 158 267-465 1-161 (187)
141 cd04133 Rop_like Rop subfamily 99.7 2.7E-17 5.9E-22 153.8 14.6 159 267-465 2-167 (176)
142 cd01893 Miro1 Miro1 subfamily. 99.7 3.1E-17 6.7E-22 150.2 14.4 155 267-464 1-157 (166)
143 cd00879 Sar1 Sar1 subfamily. 99.7 8.7E-18 1.9E-22 156.8 10.8 153 265-464 18-184 (190)
144 KOG0095 GTPase Rab30, small G 99.7 6.2E-18 1.4E-22 151.4 9.1 157 266-465 7-163 (213)
145 cd04101 RabL4 RabL4 (Rab-like4 99.7 4.4E-17 9.6E-22 147.7 14.9 154 267-464 1-157 (164)
146 PRK03003 GTP-binding protein D 99.7 1.2E-17 2.7E-22 178.6 13.1 156 265-465 210-376 (472)
147 cd00157 Rho Rho (Ras homology) 99.7 3.9E-17 8.5E-22 148.6 14.4 159 267-465 1-167 (171)
148 cd04117 Rab15 Rab15 subfamily. 99.7 5.5E-17 1.2E-21 148.1 15.3 155 267-465 1-156 (161)
149 PRK12739 elongation factor G; 99.7 1.7E-17 3.6E-22 185.1 14.2 165 264-457 6-170 (691)
150 cd04111 Rab39 Rab39 subfamily. 99.7 3.2E-17 6.9E-22 157.3 14.2 156 266-465 2-160 (211)
151 cd01871 Rac1_like Rac1-like su 99.7 4E-17 8.8E-22 151.6 14.4 157 267-465 2-169 (174)
152 KOG0098 GTPase Rab2, small G p 99.7 1.4E-17 3E-22 154.2 11.0 155 266-465 6-162 (216)
153 cd04135 Tc10 TC10 subfamily. 99.7 3.9E-17 8.4E-22 149.7 13.8 158 267-465 1-168 (174)
154 smart00178 SAR Sar1p-like memb 99.7 1.6E-17 3.5E-22 155.4 11.5 157 264-463 15-177 (184)
155 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.7E-17 3.7E-22 152.4 11.3 149 269-464 2-159 (164)
156 cd04131 Rnd Rnd subfamily. Th 99.7 4.9E-17 1.1E-21 152.0 14.5 159 267-465 2-170 (178)
157 PRK03003 GTP-binding protein D 99.7 2E-17 4.4E-22 177.0 13.5 147 266-464 38-192 (472)
158 cd04125 RabA_like RabA-like su 99.7 6.5E-17 1.4E-21 151.2 15.3 154 267-465 1-156 (188)
159 cd04163 Era Era subfamily. Er 99.7 6.7E-17 1.4E-21 144.4 14.7 153 265-464 2-162 (168)
160 cd04130 Wrch_1 Wrch-1 subfamil 99.7 2.5E-17 5.4E-22 151.8 12.2 159 267-466 1-169 (173)
161 cd04123 Rab21 Rab21 subfamily. 99.7 3.5E-17 7.5E-22 146.9 12.8 153 267-464 1-155 (162)
162 cd01879 FeoB Ferrous iron tran 99.7 2.1E-17 4.5E-22 148.2 11.3 142 271-464 1-150 (158)
163 smart00174 RHO Rho (Ras homolo 99.7 4.5E-17 9.8E-22 149.3 13.7 156 269-465 1-166 (174)
164 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.8E-17 3.9E-22 152.5 11.0 150 268-463 1-161 (167)
165 cd04134 Rho3 Rho3 subfamily. 99.7 6.8E-17 1.5E-21 151.8 15.0 159 267-465 1-168 (189)
166 PLN03110 Rab GTPase; Provision 99.7 8.3E-17 1.8E-21 154.9 15.7 155 265-465 11-168 (216)
167 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 8.5E-17 1.8E-21 157.1 15.7 161 265-465 12-182 (232)
168 cd04155 Arl3 Arl3 subfamily. 99.7 3E-17 6.5E-22 150.3 11.6 153 265-464 13-168 (173)
169 PRK00089 era GTPase Era; Revie 99.7 6.8E-17 1.5E-21 162.0 15.1 152 265-463 4-163 (292)
170 cd04114 Rab30 Rab30 subfamily. 99.7 5.7E-17 1.2E-21 147.7 13.2 155 265-465 6-163 (169)
171 PLN03108 Rab family protein; P 99.7 1E-16 2.2E-21 153.5 15.5 157 265-465 5-162 (210)
172 cd04147 Ras_dva Ras-dva subfam 99.7 4.4E-17 9.6E-22 154.1 12.4 157 268-465 1-157 (198)
173 cd04143 Rhes_like Rhes_like su 99.7 7.3E-17 1.6E-21 158.9 14.3 157 267-465 1-165 (247)
174 TIGR03594 GTPase_EngA ribosome 99.7 2.8E-17 6E-22 173.1 11.5 145 268-464 1-153 (429)
175 COG1217 TypA Predicted membran 99.7 1.1E-16 2.3E-21 165.5 15.1 169 264-459 3-173 (603)
176 KOG0080 GTPase Rab18, small G 99.7 2.1E-17 4.5E-22 149.7 8.6 159 265-465 10-168 (209)
177 cd04159 Arl10_like Arl10-like 99.7 4.8E-17 1E-21 144.6 10.8 150 269-464 2-154 (159)
178 PRK04213 GTP-binding protein; 99.7 7.6E-17 1.6E-21 152.1 12.6 156 265-464 8-185 (201)
179 cd04146 RERG_RasL11_like RERG/ 99.7 4.9E-17 1.1E-21 148.2 10.9 151 268-465 1-158 (165)
180 TIGR00231 small_GTP small GTP- 99.7 8.3E-17 1.8E-21 141.6 11.9 154 267-465 2-158 (161)
181 cd01892 Miro2 Miro2 subfamily. 99.7 1.1E-16 2.3E-21 147.8 13.2 156 265-464 3-159 (169)
182 PF00025 Arf: ADP-ribosylation 99.7 1.1E-16 2.4E-21 149.1 13.2 155 264-463 12-168 (175)
183 PRK12299 obgE GTPase CgtA; Rev 99.7 1.1E-16 2.4E-21 164.2 14.1 156 266-464 158-321 (335)
184 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.1E-16 2.4E-21 142.7 12.3 140 267-464 2-150 (157)
185 TIGR00503 prfC peptide chain r 99.7 1.1E-16 2.5E-21 173.0 14.7 154 263-437 8-161 (527)
186 PRK00093 GTP-binding protein D 99.7 8.5E-17 1.9E-21 169.9 13.3 146 267-464 2-155 (435)
187 cd04137 RheB Rheb (Ras Homolog 99.7 9.7E-17 2.1E-21 148.3 11.9 153 267-465 2-157 (180)
188 PLN00116 translation elongatio 99.7 4.6E-17 9.9E-22 185.0 11.7 171 263-457 16-218 (843)
189 cd04170 EF-G_bact Elongation f 99.7 1.1E-16 2.4E-21 158.9 13.0 163 268-461 1-163 (268)
190 cd01870 RhoA_like RhoA-like su 99.7 3E-16 6.5E-21 144.0 14.7 157 267-465 2-169 (175)
191 TIGR02729 Obg_CgtA Obg family 99.7 1.4E-16 2.9E-21 163.2 13.6 159 265-464 156-322 (329)
192 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 2.1E-16 4.6E-21 153.3 13.9 157 267-465 2-170 (222)
193 PRK00454 engB GTP-binding prot 99.7 2.8E-16 6E-21 147.0 13.8 152 265-464 23-187 (196)
194 cd00876 Ras Ras family. The R 99.7 2.8E-16 6.2E-21 140.7 13.3 153 268-465 1-155 (160)
195 smart00176 RAN Ran (Ras-relate 99.7 2.3E-16 5E-21 150.6 12.9 146 272-465 1-148 (200)
196 PRK00741 prfC peptide chain re 99.7 3.4E-16 7.3E-21 169.3 15.7 153 263-436 7-159 (526)
197 PF00071 Ras: Ras family; Int 99.7 4.3E-16 9.4E-21 140.9 13.7 154 268-465 1-155 (162)
198 COG3276 SelB Selenocysteine-sp 99.7 1.5E-16 3.2E-21 164.4 11.9 153 268-463 2-154 (447)
199 TIGR02528 EutP ethanolamine ut 99.7 5.8E-17 1.3E-21 144.1 7.6 133 268-464 2-138 (142)
200 PTZ00416 elongation factor 2; 99.7 2.1E-16 4.5E-21 179.4 13.9 171 264-458 17-213 (836)
201 PRK09518 bifunctional cytidyla 99.7 2.2E-16 4.7E-21 176.8 13.8 155 266-465 450-615 (712)
202 cd04148 RGK RGK subfamily. Th 99.7 3E-16 6.4E-21 151.7 12.9 152 267-465 1-157 (221)
203 PRK12296 obgE GTPase CgtA; Rev 99.7 2.8E-16 6.1E-21 167.8 13.9 158 264-463 157-332 (500)
204 PRK09518 bifunctional cytidyla 99.7 3.1E-16 6.7E-21 175.6 14.9 148 265-464 274-429 (712)
205 COG0218 Predicted GTPase [Gene 99.7 6.1E-16 1.3E-20 146.1 13.6 150 267-462 25-188 (200)
206 PRK12298 obgE GTPase CgtA; Rev 99.7 3.9E-16 8.5E-21 163.1 13.4 159 267-464 160-326 (390)
207 cd04103 Centaurin_gamma Centau 99.7 5.2E-16 1.1E-20 142.1 12.4 151 267-465 1-153 (158)
208 PRK07560 elongation factor EF- 99.7 2.4E-16 5.1E-21 176.9 12.2 174 263-460 17-211 (731)
209 PRK12297 obgE GTPase CgtA; Rev 99.7 5.5E-16 1.2E-20 163.3 14.0 154 266-464 158-320 (424)
210 cd01878 HflX HflX subfamily. 99.7 3E-16 6.6E-21 148.5 10.2 146 266-464 41-198 (204)
211 KOG0087 GTPase Rab11/YPT3, sma 99.7 4.9E-16 1.1E-20 146.7 11.2 155 264-464 12-169 (222)
212 COG0480 FusA Translation elong 99.7 6.7E-16 1.5E-20 170.6 13.4 149 263-436 7-156 (697)
213 PRK09554 feoB ferrous iron tra 99.7 9.7E-16 2.1E-20 172.1 14.8 147 265-463 2-160 (772)
214 cd01873 RhoBTB RhoBTB subfamil 99.6 2.3E-15 5E-20 143.0 14.9 113 339-465 61-190 (195)
215 cd01881 Obg_like The Obg-like 99.6 7.4E-16 1.6E-20 140.6 10.8 153 271-464 1-170 (176)
216 KOG0463 GTP-binding protein GP 99.6 3.7E-16 8.1E-21 157.7 9.3 225 208-461 75-348 (641)
217 PRK15467 ethanolamine utilizat 99.6 2.6E-16 5.5E-21 144.4 7.4 134 268-464 3-140 (158)
218 COG0486 ThdF Predicted GTPase 99.6 6.8E-16 1.5E-20 161.0 11.0 143 266-462 217-367 (454)
219 TIGR03156 GTP_HflX GTP-binding 99.6 1.3E-15 2.7E-20 157.4 12.5 145 266-464 189-345 (351)
220 KOG0461 Selenocysteine-specifi 99.6 1.3E-15 2.8E-20 152.6 11.9 162 266-461 7-183 (522)
221 cd04129 Rho2 Rho2 subfamily. 99.6 4E-15 8.6E-20 139.4 14.3 158 267-465 2-167 (187)
222 PRK05291 trmE tRNA modificatio 99.6 1E-15 2.2E-20 163.0 11.5 141 266-464 215-363 (449)
223 PTZ00132 GTP-binding nuclear p 99.6 5.3E-15 1.2E-19 141.5 15.3 155 263-463 6-160 (215)
224 cd00880 Era_like Era (E. coli 99.6 3.3E-15 7.2E-20 131.3 12.2 149 271-464 1-157 (163)
225 KOG0086 GTPase Rab4, small G p 99.6 1.2E-15 2.5E-20 137.3 8.9 153 266-463 9-163 (214)
226 TIGR00450 mnmE_trmE_thdF tRNA 99.6 4E-15 8.6E-20 158.0 13.9 143 265-463 202-352 (442)
227 COG4108 PrfC Peptide chain rel 99.6 1.3E-15 2.8E-20 156.8 9.6 151 264-432 10-161 (528)
228 KOG0073 GTP-binding ADP-ribosy 99.6 5.4E-15 1.2E-19 134.6 12.4 155 264-463 14-170 (185)
229 cd01876 YihA_EngB The YihA (En 99.6 1.6E-14 3.4E-19 129.5 15.4 150 269-464 2-164 (170)
230 PRK13351 elongation factor G; 99.6 4.5E-15 9.7E-20 165.7 13.9 148 264-436 6-153 (687)
231 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.1E-14 4.6E-19 137.4 16.6 156 267-463 1-182 (202)
232 KOG0079 GTP-binding protein H- 99.6 2E-15 4.2E-20 135.3 8.2 152 267-464 9-162 (198)
233 PRK11058 GTPase HflX; Provisio 99.6 2.2E-15 4.9E-20 159.1 9.3 149 267-464 198-355 (426)
234 KOG0093 GTPase Rab3, small G p 99.6 3.1E-15 6.8E-20 133.8 8.4 153 266-464 21-176 (193)
235 cd00882 Ras_like_GTPase Ras-li 99.6 1.4E-14 3.1E-19 125.3 11.6 150 271-464 1-153 (157)
236 KOG1143 Predicted translation 99.6 6E-15 1.3E-19 149.0 10.3 220 213-460 109-377 (591)
237 COG5258 GTPBP1 GTPase [General 99.6 8.4E-15 1.8E-19 148.6 11.2 214 218-460 70-328 (527)
238 TIGR00490 aEF-2 translation el 99.6 1.1E-14 2.4E-19 163.2 12.3 132 264-419 17-152 (720)
239 KOG1532 GTPase XAB1, interacts 99.6 3.3E-15 7.1E-20 146.1 6.7 197 263-465 16-258 (366)
240 KOG0070 GTP-binding ADP-ribosy 99.6 1.4E-14 3E-19 134.5 10.4 155 263-463 14-170 (181)
241 COG0370 FeoB Fe2+ transport sy 99.6 1.7E-14 3.6E-19 156.3 12.1 147 265-463 2-156 (653)
242 COG2229 Predicted GTPase [Gene 99.6 4.8E-14 1E-18 130.9 13.5 164 263-464 7-171 (187)
243 cd01896 DRG The developmentall 99.5 4.6E-14 1E-18 137.8 13.4 82 268-380 2-90 (233)
244 PRK12740 elongation factor G; 99.5 1.7E-14 3.7E-19 160.6 11.7 127 272-420 1-127 (668)
245 cd04104 p47_IIGP_like p47 (47- 99.5 6.8E-14 1.5E-18 132.8 14.1 156 266-461 1-174 (197)
246 TIGR00437 feoB ferrous iron tr 99.5 1.9E-14 4E-19 157.9 11.5 141 273-465 1-149 (591)
247 KOG0091 GTPase Rab39, small G 99.5 7.1E-15 1.5E-19 133.7 6.7 156 265-464 7-166 (213)
248 PLN00023 GTP-binding protein; 99.5 1.2E-13 2.5E-18 140.4 15.0 145 263-443 18-191 (334)
249 PF01926 MMR_HSR1: 50S ribosom 99.5 5.3E-14 1.2E-18 121.6 10.4 107 268-414 1-116 (116)
250 KOG1489 Predicted GTP-binding 99.5 3.2E-14 6.9E-19 141.7 10.1 159 264-464 194-360 (366)
251 KOG1144 Translation initiation 99.5 4.4E-14 9.6E-19 152.1 11.2 162 261-462 470-678 (1064)
252 PF10662 PduV-EutP: Ethanolami 99.5 4.9E-14 1.1E-18 127.4 9.2 133 267-463 2-138 (143)
253 KOG0083 GTPase Rab26/Rab37, sm 99.5 1.1E-14 2.4E-19 128.4 4.7 152 271-464 2-153 (192)
254 KOG0097 GTPase Rab14, small G 99.5 9.1E-14 2E-18 123.7 10.1 155 265-464 10-166 (215)
255 PRK09866 hypothetical protein; 99.5 2.1E-13 4.6E-18 147.5 14.7 111 343-463 229-345 (741)
256 cd01882 BMS1 Bms1. Bms1 is an 99.5 5.3E-13 1.1E-17 129.7 15.9 149 263-459 36-184 (225)
257 KOG0395 Ras-related GTPase [Ge 99.5 1.6E-13 3.4E-18 130.9 12.0 158 265-465 2-159 (196)
258 cd04105 SR_beta Signal recogni 99.5 2.9E-13 6.2E-18 129.3 13.6 115 268-420 2-124 (203)
259 COG1100 GTPase SAR1 and relate 99.5 2.6E-13 5.6E-18 129.2 12.9 159 266-464 5-178 (219)
260 PRK14845 translation initiatio 99.5 1.8E-13 3.9E-18 156.8 13.6 110 345-463 527-665 (1049)
261 KOG0088 GTPase Rab21, small G 99.5 6E-14 1.3E-18 127.0 7.6 158 264-465 11-169 (218)
262 KOG0075 GTP-binding ADP-ribosy 99.5 1.5E-13 3.3E-18 123.1 10.0 150 266-461 20-172 (186)
263 PF08477 Miro: Miro-like prote 99.5 1.8E-13 4E-18 117.9 9.5 119 268-416 1-119 (119)
264 KOG0052 Translation elongation 99.5 7.7E-14 1.7E-18 142.8 7.8 177 264-444 5-183 (391)
265 KOG1423 Ras-like GTPase ERA [C 99.5 1.4E-13 3.1E-18 136.5 9.3 120 261-419 67-199 (379)
266 COG1084 Predicted GTPase [Gene 99.5 4.4E-13 9.6E-18 134.5 12.8 151 265-461 167-326 (346)
267 KOG0081 GTPase Rab27, small G 99.4 8.5E-14 1.8E-18 126.1 5.5 104 344-463 67-173 (219)
268 KOG0467 Translation elongation 99.4 8.9E-13 1.9E-17 143.0 13.5 173 264-460 7-206 (887)
269 KOG0071 GTP-binding ADP-ribosy 99.4 8.6E-13 1.9E-17 117.5 10.7 153 265-463 16-170 (180)
270 KOG0076 GTP-binding ADP-ribosy 99.4 2.7E-13 5.9E-18 124.6 6.8 166 262-462 13-178 (197)
271 COG2262 HflX GTPases [General 99.4 1.5E-12 3.2E-17 134.1 12.3 147 264-462 190-347 (411)
272 PTZ00099 rab6; Provisional 99.4 3.1E-12 6.8E-17 119.7 12.2 123 328-465 13-136 (176)
273 cd01850 CDC_Septin CDC/Septin. 99.4 8.9E-12 1.9E-16 124.8 15.3 144 266-441 4-177 (276)
274 COG0536 Obg Predicted GTPase [ 99.4 2.9E-12 6.4E-17 129.2 11.5 159 267-463 160-325 (369)
275 KOG0464 Elongation factor G [T 99.4 2.2E-13 4.9E-18 139.1 3.3 136 264-421 35-170 (753)
276 KOG1191 Mitochondrial GTPase [ 99.4 3.5E-13 7.6E-18 140.8 4.5 159 263-464 265-443 (531)
277 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 4.3E-12 9.3E-17 120.1 11.2 136 267-440 1-153 (196)
278 KOG0465 Mitochondrial elongati 99.3 1.3E-12 2.8E-17 139.0 7.2 137 264-422 37-173 (721)
279 KOG4252 GTP-binding protein [S 99.3 3.3E-13 7.1E-18 124.6 1.2 158 262-463 16-173 (246)
280 PF09439 SRPRB: Signal recogni 99.3 9.1E-12 2E-16 117.1 10.9 118 266-420 3-127 (181)
281 KOG0393 Ras-related small GTPa 99.3 9.9E-12 2.1E-16 117.9 11.2 158 265-465 3-173 (198)
282 KOG0074 GTP-binding ADP-ribosy 99.3 7E-12 1.5E-16 111.9 8.7 154 264-464 15-172 (185)
283 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 4.2E-11 9.2E-16 117.0 15.0 153 268-456 1-162 (232)
284 COG3596 Predicted GTPase [Gene 99.3 8.9E-12 1.9E-16 122.7 9.6 155 263-462 36-213 (296)
285 KOG0466 Translation initiation 99.3 2.6E-12 5.6E-17 127.3 5.3 184 262-461 34-231 (466)
286 KOG0468 U5 snRNP-specific prot 99.3 1.8E-11 3.8E-16 131.2 11.9 134 262-418 124-262 (971)
287 KOG0072 GTP-binding ADP-ribosy 99.3 9.6E-12 2.1E-16 111.3 7.4 153 265-463 17-171 (182)
288 cd01899 Ygr210 Ygr210 subfamil 99.2 6.2E-11 1.3E-15 121.0 12.1 37 343-379 68-111 (318)
289 PF03029 ATP_bind_1: Conserved 99.2 1.4E-12 3.1E-17 127.9 -0.5 112 345-463 92-229 (238)
290 PRK09435 membrane ATPase/prote 99.2 3.9E-11 8.5E-16 122.9 8.7 106 341-464 146-253 (332)
291 cd01853 Toc34_like Toc34-like 99.2 5.5E-10 1.2E-14 110.4 16.4 121 262-419 27-163 (249)
292 COG1163 DRG Predicted GTPase [ 99.2 1.9E-10 4.1E-15 115.5 12.2 84 266-380 63-153 (365)
293 KOG0090 Signal recognition par 99.2 1.5E-10 3.3E-15 110.0 10.0 116 267-421 39-161 (238)
294 PF05049 IIGP: Interferon-indu 99.1 1.2E-10 2.6E-15 120.6 8.8 151 264-455 33-200 (376)
295 PRK09602 translation-associate 99.1 5.9E-10 1.3E-14 117.1 13.9 36 344-379 72-114 (396)
296 PF00350 Dynamin_N: Dynamin fa 99.1 1.1E-10 2.3E-15 106.8 7.3 66 342-415 99-168 (168)
297 TIGR00991 3a0901s02IAP34 GTP-b 99.1 7.7E-10 1.7E-14 112.0 13.2 122 261-419 33-167 (313)
298 PRK13768 GTPase; Provisional 99.1 2.1E-10 4.5E-15 113.5 8.8 112 343-463 96-239 (253)
299 KOG0096 GTPase Ran/TC4/GSP1 (n 99.1 4.9E-10 1.1E-14 104.6 9.9 154 264-463 8-161 (216)
300 PTZ00258 GTP-binding protein; 99.1 2.1E-09 4.6E-14 112.3 14.1 84 264-378 19-126 (390)
301 KOG1707 Predicted Ras related/ 99.1 3.9E-10 8.4E-15 120.2 8.5 158 263-463 6-167 (625)
302 TIGR00073 hypB hydrogenase acc 99.0 5.2E-10 1.1E-14 107.0 7.5 99 343-464 102-200 (207)
303 TIGR00101 ureG urease accessor 99.0 1.2E-09 2.6E-14 104.4 9.1 99 343-464 91-189 (199)
304 PF04548 AIG1: AIG1 family; I 99.0 1.4E-09 3.1E-14 104.6 9.6 135 267-441 1-155 (212)
305 KOG1490 GTP-binding protein CR 99.0 7.6E-10 1.7E-14 116.1 8.1 159 263-462 165-332 (620)
306 KOG1673 Ras GTPases [General f 99.0 2.8E-09 6.1E-14 96.7 10.6 161 264-465 18-180 (205)
307 TIGR00750 lao LAO/AO transport 99.0 2E-09 4.4E-14 109.0 11.0 102 341-463 124-230 (300)
308 KOG0077 Vesicle coat complex C 99.0 1.9E-09 4E-14 98.9 9.3 158 265-463 19-185 (193)
309 smart00053 DYNc Dynamin, GTPas 99.0 4.5E-09 9.9E-14 103.3 12.0 69 343-420 124-207 (240)
310 KOG0469 Elongation factor 2 [T 99.0 3.2E-09 7E-14 111.2 11.4 132 263-418 16-163 (842)
311 PRK09601 GTP-binding protein Y 99.0 5.3E-09 1.2E-13 108.3 12.8 81 267-378 3-107 (364)
312 KOG3886 GTP-binding protein [S 98.9 1.3E-09 2.8E-14 104.9 6.7 153 266-456 4-164 (295)
313 KOG2486 Predicted GTPase [Gene 98.9 1.8E-09 3.9E-14 106.5 7.1 159 263-463 133-308 (320)
314 TIGR02836 spore_IV_A stage IV 98.9 1.7E-08 3.6E-13 105.2 14.4 136 264-417 15-192 (492)
315 KOG3883 Ras family small GTPas 98.9 9.9E-09 2.1E-13 93.0 11.1 155 265-463 8-167 (198)
316 PF03308 ArgK: ArgK protein; 98.9 3.3E-09 7.2E-14 104.4 7.3 177 265-464 28-223 (266)
317 KOG4423 GTP-binding protein-li 98.9 1.1E-10 2.4E-15 108.7 -3.7 152 267-462 26-185 (229)
318 PF00735 Septin: Septin; Inte 98.9 1.8E-08 3.8E-13 101.4 11.6 145 266-442 4-177 (281)
319 COG4917 EutP Ethanolamine util 98.9 2.5E-09 5.4E-14 94.0 4.7 133 267-463 2-138 (148)
320 COG5192 BMS1 GTP-binding prote 98.8 3.4E-08 7.3E-13 104.8 13.5 144 264-455 67-210 (1077)
321 KOG0448 Mitofusin 1 GTPase, in 98.8 2.1E-08 4.6E-13 108.7 11.3 180 265-455 108-310 (749)
322 PRK10463 hydrogenase nickel in 98.8 3.5E-09 7.6E-14 106.4 5.0 98 342-462 183-280 (290)
323 COG1703 ArgK Putative periplas 98.8 2E-08 4.4E-13 100.3 9.4 183 260-464 45-247 (323)
324 COG0378 HypB Ni2+-binding GTPa 98.8 3.9E-09 8.4E-14 99.6 3.1 165 267-462 14-192 (202)
325 COG0012 Predicted GTPase, prob 98.7 9.6E-08 2.1E-12 98.2 11.6 89 267-378 3-108 (372)
326 TIGR00993 3a0901s04IAP86 chlor 98.7 1.1E-07 2.4E-12 104.0 12.4 118 265-419 117-250 (763)
327 KOG0410 Predicted GTP binding 98.7 3.1E-08 6.7E-13 99.6 7.0 141 266-463 178-333 (410)
328 cd01900 YchF YchF subfamily. 98.6 4.5E-08 9.8E-13 98.0 5.3 79 269-378 1-103 (274)
329 COG5019 CDC3 Septin family pro 98.5 1.5E-06 3.2E-11 89.1 13.2 145 264-441 21-196 (373)
330 KOG1547 Septin CDC10 and relat 98.5 1.6E-06 3.4E-11 84.4 11.4 143 265-441 45-218 (336)
331 cd01858 NGP_1 NGP-1. Autoanti 98.4 4.2E-07 9.1E-12 82.9 6.5 56 266-354 102-157 (157)
332 KOG2655 Septin family protein 98.4 2.8E-06 6.1E-11 87.6 12.3 144 265-441 20-192 (366)
333 PRK10416 signal recognition pa 98.4 3.5E-06 7.5E-11 86.3 12.2 95 342-462 195-301 (318)
334 cd04178 Nucleostemin_like Nucl 98.3 7.1E-07 1.5E-11 83.5 5.8 57 265-354 116-172 (172)
335 PRK14974 cell division protein 98.3 2.1E-06 4.6E-11 88.5 9.7 95 342-462 221-321 (336)
336 KOG3905 Dynein light intermedi 98.3 9.4E-06 2E-10 82.0 13.2 51 404-460 222-279 (473)
337 PF00448 SRP54: SRP54-type pro 98.3 3.4E-06 7.3E-11 80.6 9.1 130 267-419 2-154 (196)
338 KOG1486 GTP-binding protein DR 98.3 3.4E-06 7.3E-11 82.6 8.9 84 266-380 62-152 (364)
339 KOG1954 Endocytosis/signaling 98.3 6E-06 1.3E-10 84.6 10.9 135 266-419 58-225 (532)
340 TIGR00064 ftsY signal recognit 98.2 1E-05 2.2E-10 81.1 11.5 95 342-462 153-259 (272)
341 TIGR00157 ribosome small subun 98.2 5.1E-06 1.1E-10 82.0 9.1 94 355-465 24-117 (245)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 6.5E-06 1.4E-10 73.9 8.0 80 359-458 3-84 (141)
343 cd01859 MJ1464 MJ1464. This f 98.2 4.7E-06 1E-10 75.7 7.1 84 360-463 5-88 (156)
344 cd01851 GBP Guanylate-binding 98.2 2.8E-05 6.2E-10 75.6 13.0 90 265-379 6-103 (224)
345 cd01855 YqeH YqeH. YqeH is an 98.1 3E-06 6.5E-11 79.6 5.6 63 267-354 128-190 (190)
346 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 3.3E-06 7.2E-11 75.8 5.3 22 268-289 85-106 (141)
347 COG1161 Predicted GTPases [Gen 98.1 3.3E-06 7.1E-11 86.6 5.8 56 265-353 131-186 (322)
348 cd01858 NGP_1 NGP-1. Autoanti 98.1 6.2E-06 1.3E-10 75.2 6.9 82 362-462 3-86 (157)
349 cd01849 YlqF_related_GTPase Yl 98.1 4.1E-06 8.9E-11 76.3 5.4 57 265-354 99-155 (155)
350 TIGR01425 SRP54_euk signal rec 98.1 1.2E-05 2.6E-10 85.3 9.3 66 342-418 181-252 (429)
351 PRK09563 rbgA GTPase YlqF; Rev 98.1 6.1E-06 1.3E-10 83.2 6.7 57 265-354 120-176 (287)
352 COG1419 FlhF Flagellar GTP-bin 98.0 1.6E-05 3.4E-10 83.1 9.1 131 266-419 203-352 (407)
353 PF00641 zf-RanBP: Zn-finger i 98.0 1.6E-06 3.5E-11 57.8 1.2 29 48-76 2-30 (30)
354 TIGR03596 GTPase_YlqF ribosome 98.0 6.8E-06 1.5E-10 82.3 6.1 57 265-354 117-173 (276)
355 PRK11889 flhF flagellar biosyn 98.0 1.2E-05 2.6E-10 84.2 8.1 66 343-419 320-391 (436)
356 cd01855 YqeH YqeH. YqeH is an 98.0 1.1E-05 2.4E-10 75.8 7.0 94 357-464 24-118 (190)
357 cd01856 YlqF YlqF. Proteins o 98.0 1E-05 2.2E-10 75.0 6.1 56 266-354 115-170 (171)
358 PRK12288 GTPase RsgA; Reviewed 98.0 8.4E-06 1.8E-10 84.5 6.1 25 268-292 207-231 (347)
359 PF05783 DLIC: Dynein light in 98.0 0.0001 2.2E-09 79.2 14.4 49 407-460 198-253 (472)
360 cd01849 YlqF_related_GTPase Yl 98.0 2.1E-05 4.6E-10 71.6 7.8 77 369-464 1-78 (155)
361 PF03193 DUF258: Protein of un 98.0 3.8E-06 8.3E-11 77.8 2.8 24 267-290 36-59 (161)
362 PRK00098 GTPase RsgA; Reviewed 98.0 3.5E-05 7.5E-10 78.2 9.6 83 365-464 78-160 (298)
363 COG3640 CooC CO dehydrogenase 98.0 2.4E-05 5.3E-10 76.1 7.9 65 343-418 133-198 (255)
364 KOG0447 Dynamin-like GTP bindi 97.9 3.8E-05 8.1E-10 82.0 8.8 150 264-420 306-494 (980)
365 PRK12289 GTPase RsgA; Reviewed 97.9 1.3E-05 2.7E-10 83.3 5.2 24 268-291 174-197 (352)
366 TIGR00092 GTP-binding protein 97.9 2.1E-05 4.5E-10 81.9 6.6 89 267-378 3-108 (368)
367 PF09547 Spore_IV_A: Stage IV 97.9 0.00035 7.6E-09 73.4 15.3 162 266-454 17-218 (492)
368 TIGR00157 ribosome small subun 97.9 1.9E-05 4E-10 78.0 5.6 24 268-291 122-145 (245)
369 cd03114 ArgK-like The function 97.9 3.6E-05 7.7E-10 70.2 7.0 59 342-416 90-148 (148)
370 KOG1534 Putative transcription 97.9 2.2E-05 4.8E-10 75.2 5.8 73 343-419 97-178 (273)
371 cd03115 SRP The signal recogni 97.9 0.00011 2.5E-09 67.8 10.3 68 342-420 81-154 (173)
372 cd03110 Fer4_NifH_child This p 97.8 0.00016 3.6E-09 67.0 11.3 82 342-441 91-172 (179)
373 COG0523 Putative GTPases (G3E 97.8 0.00022 4.7E-09 73.3 13.1 93 343-453 84-184 (323)
374 cd03112 CobW_like The function 97.8 1.7E-05 3.6E-10 73.0 4.4 21 269-289 3-23 (158)
375 cd01856 YlqF YlqF. Proteins o 97.8 2.2E-05 4.7E-10 72.8 4.8 89 352-462 3-92 (171)
376 TIGR03597 GTPase_YqeH ribosome 97.8 3.5E-05 7.6E-10 80.2 6.9 116 267-419 155-280 (360)
377 cd01859 MJ1464 MJ1464. This f 97.8 3.3E-05 7.3E-10 70.1 5.9 23 266-288 101-123 (156)
378 PF02492 cobW: CobW/HypB/UreG, 97.8 2.4E-05 5.2E-10 73.2 5.0 81 343-435 84-170 (178)
379 PRK12726 flagellar biosynthesi 97.8 4.3E-05 9.3E-10 79.8 7.2 25 266-290 206-230 (407)
380 TIGR03597 GTPase_YqeH ribosome 97.8 4.5E-05 9.7E-10 79.5 7.2 98 354-465 50-147 (360)
381 PRK12289 GTPase RsgA; Reviewed 97.8 7.6E-05 1.6E-09 77.5 8.8 84 363-464 85-168 (352)
382 PRK14722 flhF flagellar biosyn 97.8 0.0001 2.3E-09 77.0 9.9 25 266-290 137-161 (374)
383 PRK12724 flagellar biosynthesi 97.8 7.6E-05 1.6E-09 78.9 8.5 67 342-419 298-373 (432)
384 KOG1491 Predicted GTP-binding 97.8 2.9E-05 6.3E-10 79.0 5.1 97 265-378 19-125 (391)
385 PRK00771 signal recognition pa 97.7 0.00017 3.6E-09 77.0 10.8 26 265-290 94-119 (437)
386 KOG0082 G-protein alpha subuni 97.7 0.00012 2.6E-09 75.6 9.3 134 331-464 182-337 (354)
387 COG1162 Predicted GTPases [Gen 97.7 3.9E-05 8.5E-10 77.4 5.5 22 268-289 166-187 (301)
388 PRK13796 GTPase YqeH; Provisio 97.7 4.4E-05 9.5E-10 79.7 5.8 60 267-354 161-220 (365)
389 TIGR03596 GTPase_YlqF ribosome 97.7 5.3E-05 1.1E-09 76.0 5.6 89 352-462 5-94 (276)
390 smart00547 ZnF_RBZ Zinc finger 97.7 1.5E-05 3.3E-10 51.2 1.0 25 49-73 1-25 (26)
391 PRK14721 flhF flagellar biosyn 97.7 0.00013 2.8E-09 77.4 8.1 68 341-419 267-340 (420)
392 PRK06731 flhF flagellar biosyn 97.6 0.00018 4E-09 72.1 8.7 66 343-419 154-225 (270)
393 PRK10867 signal recognition pa 97.6 0.00035 7.6E-09 74.5 10.8 25 265-289 99-123 (433)
394 smart00010 small_GTPase Small 97.6 9.4E-05 2E-09 63.3 5.4 21 267-287 1-21 (124)
395 PRK12727 flagellar biosynthesi 97.6 0.00034 7.5E-09 75.9 10.6 24 266-289 350-373 (559)
396 PRK05703 flhF flagellar biosyn 97.6 0.00022 4.8E-09 75.9 8.7 67 342-419 298-371 (424)
397 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00011 2.4E-09 74.1 6.1 24 267-290 162-185 (287)
398 cd00066 G-alpha G protein alph 97.5 0.0003 6.4E-09 72.1 8.5 131 332-463 149-303 (317)
399 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00011 2.3E-09 74.2 5.2 90 351-462 7-97 (287)
400 KOG3887 Predicted small GTPase 97.5 0.00059 1.3E-08 66.8 9.3 152 267-455 28-187 (347)
401 KOG1487 GTP-binding protein DR 97.5 0.00026 5.7E-09 69.9 6.7 83 267-380 60-149 (358)
402 PRK11537 putative GTP-binding 97.5 0.00091 2E-08 68.6 11.1 24 266-289 4-27 (318)
403 PRK12723 flagellar biosynthesi 97.5 0.00047 1E-08 72.6 9.1 132 265-419 173-326 (388)
404 PRK00098 GTPase RsgA; Reviewed 97.4 0.00018 3.8E-09 73.1 5.7 25 267-291 165-189 (298)
405 smart00275 G_alpha G protein a 97.4 0.00079 1.7E-08 69.8 10.3 132 331-463 171-326 (342)
406 TIGR02475 CobW cobalamin biosy 97.4 0.0021 4.5E-08 66.6 13.0 23 267-289 5-27 (341)
407 KOG1424 Predicted GTP-binding 97.4 0.00014 3E-09 77.6 4.2 55 266-353 314-368 (562)
408 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00047 1E-08 69.6 7.6 82 364-463 75-156 (287)
409 PRK06995 flhF flagellar biosyn 97.4 0.00012 2.6E-09 78.9 3.3 24 267-290 257-280 (484)
410 TIGR00959 ffh signal recogniti 97.3 0.00045 9.7E-09 73.6 7.1 25 265-289 98-122 (428)
411 cd02038 FleN-like FleN is a me 97.3 0.0017 3.7E-08 58.3 9.8 81 344-438 45-126 (139)
412 PRK01889 GTPase RsgA; Reviewed 97.3 0.001 2.2E-08 69.3 9.6 79 365-462 110-188 (356)
413 cd02036 MinD Bacterial cell di 97.3 0.0023 5E-08 58.6 10.9 64 345-418 64-127 (179)
414 KOG2485 Conserved ATP/GTP bind 97.3 0.00032 6.9E-09 70.9 5.1 65 264-353 141-205 (335)
415 PRK13796 GTPase YqeH; Provisio 97.3 0.00091 2E-08 69.9 8.4 90 361-464 62-152 (365)
416 cd03111 CpaE_like This protein 97.2 0.0021 4.5E-08 55.1 9.0 60 345-414 44-106 (106)
417 PRK12288 GTPase RsgA; Reviewed 97.2 0.0014 3.1E-08 68.0 9.2 84 365-464 118-201 (347)
418 COG0552 FtsY Signal recognitio 97.2 0.0014 3.1E-08 67.0 8.8 30 263-292 136-165 (340)
419 COG0541 Ffh Signal recognition 97.2 0.00095 2.1E-08 70.3 7.7 143 264-418 98-252 (451)
420 KOG1707 Predicted Ras related/ 97.2 0.0035 7.6E-08 68.0 12.1 145 263-454 422-567 (625)
421 PRK14723 flhF flagellar biosyn 97.2 0.00091 2E-08 75.5 7.9 24 267-290 186-209 (767)
422 TIGR03348 VI_IcmF type VI secr 97.1 0.00092 2E-08 79.6 7.3 75 344-418 161-256 (1169)
423 KOG3859 Septins (P-loop GTPase 97.0 0.0018 3.8E-08 64.7 7.6 141 263-441 39-210 (406)
424 KOG0780 Signal recognition par 97.0 0.0019 4.1E-08 67.1 8.0 131 264-418 99-253 (483)
425 KOG2484 GTPase [General functi 97.0 0.00048 1E-08 71.5 3.0 58 264-354 250-307 (435)
426 KOG0781 Signal recognition par 96.9 0.0011 2.4E-08 70.2 5.4 152 262-419 374-544 (587)
427 KOG1533 Predicted GTPase [Gene 96.9 0.0012 2.6E-08 64.4 4.6 74 342-419 95-177 (290)
428 KOG2743 Cobalamin synthesis pr 96.8 0.0073 1.6E-07 61.0 9.3 28 262-289 53-80 (391)
429 PRK13695 putative NTPase; Prov 96.7 0.0051 1.1E-07 57.0 7.7 23 267-289 1-23 (174)
430 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.01 2.2E-07 47.9 8.0 69 269-380 2-71 (99)
431 cd02037 MRP-like MRP (Multiple 96.6 0.0094 2E-07 54.9 8.7 67 342-418 66-134 (169)
432 PRK08099 bifunctional DNA-bind 96.6 0.0079 1.7E-07 63.7 8.5 34 259-292 212-245 (399)
433 COG3523 IcmF Type VI protein s 96.5 0.0036 7.9E-08 73.5 6.1 77 343-419 173-270 (1188)
434 cd04178 Nucleostemin_like Nucl 96.4 0.0059 1.3E-07 57.1 5.6 53 369-432 1-55 (172)
435 cd02042 ParA ParA and ParB of 96.3 0.016 3.4E-07 48.8 7.6 35 344-380 40-74 (104)
436 KOG4181 Uncharacterized conser 96.3 0.019 4.1E-07 59.1 9.0 23 267-289 189-211 (491)
437 CHL00175 minD septum-site dete 96.3 0.039 8.3E-07 55.1 11.2 65 343-417 126-190 (281)
438 PHA02518 ParA-like protein; Pr 96.2 0.012 2.6E-07 55.5 7.0 70 342-418 75-146 (211)
439 PRK01889 GTPase RsgA; Reviewed 96.2 0.0048 1E-07 64.3 4.3 25 267-291 196-220 (356)
440 KOG4477 RING1 interactor RYBP 96.0 0.0036 7.7E-08 58.4 2.2 30 46-75 20-49 (228)
441 KOG2484 GTPase [General functi 96.0 0.014 3E-07 60.9 6.6 72 355-436 134-206 (435)
442 PF00503 G-alpha: G-protein al 95.9 0.016 3.5E-07 60.9 6.9 130 331-462 222-381 (389)
443 PF06858 NOG1: Nucleolar GTP-b 95.9 0.034 7.3E-07 42.8 6.7 46 367-416 13-58 (58)
444 cd02117 NifH_like This family 95.9 0.064 1.4E-06 51.3 10.2 68 342-418 115-188 (212)
445 cd02032 Bchl_like This family 95.9 0.053 1.1E-06 53.7 9.9 69 343-417 115-184 (267)
446 KOG2423 Nucleolar GTPase [Gene 95.8 0.003 6.6E-08 65.7 0.8 26 263-288 304-329 (572)
447 COG1162 Predicted GTPases [Gen 95.8 0.042 9E-07 55.9 8.9 80 368-463 80-159 (301)
448 TIGR01281 DPOR_bchL light-inde 95.5 0.053 1.1E-06 53.6 8.3 67 342-417 114-184 (268)
449 COG1618 Predicted nucleotide k 95.5 0.043 9.3E-07 51.1 6.8 24 265-288 4-27 (179)
450 PF13207 AAA_17: AAA domain; P 95.4 0.011 2.4E-07 50.8 2.6 23 268-290 1-23 (121)
451 cd02040 NifH NifH gene encodes 95.2 0.076 1.6E-06 52.2 8.4 38 342-379 115-153 (270)
452 KOG0705 GTPase-activating prot 95.1 0.014 3.1E-07 63.0 2.9 153 264-465 28-183 (749)
453 KOG0066 eIF2-interacting prote 95.0 0.064 1.4E-06 56.9 7.3 27 265-291 612-638 (807)
454 PRK13849 putative crown gall t 94.9 0.092 2E-06 51.4 7.9 68 342-416 82-151 (231)
455 CHL00072 chlL photochlorophyll 94.9 0.13 2.9E-06 52.0 9.1 69 343-417 115-184 (290)
456 PF00005 ABC_tran: ABC transpo 94.9 0.018 3.8E-07 50.7 2.4 23 268-290 13-35 (137)
457 KOG0099 G protein subunit Galp 94.8 0.063 1.4E-06 53.5 6.3 86 333-418 191-282 (379)
458 PRK07261 topology modulation p 94.7 0.022 4.7E-07 53.1 2.8 22 268-289 2-23 (171)
459 KOG1424 Predicted GTP-binding 94.7 0.062 1.3E-06 57.9 6.5 80 357-455 164-244 (562)
460 PF13671 AAA_33: AAA domain; P 94.7 0.022 4.7E-07 50.3 2.5 23 269-291 2-24 (143)
461 PF13521 AAA_28: AAA domain; P 94.6 0.016 3.4E-07 53.0 1.5 22 268-289 1-22 (163)
462 PRK14738 gmk guanylate kinase; 94.6 0.032 6.8E-07 53.5 3.6 27 262-288 9-35 (206)
463 COG0563 Adk Adenylate kinase a 94.6 0.025 5.4E-07 53.3 2.8 25 267-291 1-25 (178)
464 PRK08233 hypothetical protein; 94.5 0.028 6.1E-07 51.7 3.0 26 266-291 3-28 (182)
465 PRK13230 nitrogenase reductase 94.5 0.17 3.6E-06 50.5 8.6 24 267-290 2-25 (279)
466 PRK13185 chlL protochlorophyll 94.4 0.16 3.4E-06 50.3 8.3 36 342-378 116-151 (270)
467 PRK08118 topology modulation p 94.4 0.03 6.4E-07 52.0 2.8 25 267-291 2-26 (167)
468 TIGR00235 udk uridine kinase. 94.4 0.033 7.2E-07 53.1 3.2 27 265-291 5-31 (207)
469 PF13555 AAA_29: P-loop contai 94.3 0.034 7.3E-07 43.5 2.5 21 268-288 25-45 (62)
470 COG1116 TauB ABC-type nitrate/ 94.3 0.025 5.5E-07 55.8 2.2 23 269-291 32-54 (248)
471 cd01120 RecA-like_NTPases RecA 94.2 0.19 4.1E-06 44.4 7.6 22 269-290 2-23 (165)
472 PRK14530 adenylate kinase; Pro 94.2 0.035 7.7E-07 53.3 2.9 26 267-292 4-29 (215)
473 smart00382 AAA ATPases associa 94.1 0.037 8.1E-07 46.8 2.7 23 267-289 3-25 (148)
474 COG3840 ThiQ ABC-type thiamine 94.1 0.033 7.2E-07 53.0 2.5 23 268-290 27-49 (231)
475 cd02019 NK Nucleoside/nucleoti 94.1 0.037 7.9E-07 43.6 2.3 20 269-288 2-21 (69)
476 PRK05480 uridine/cytidine kina 94.0 0.039 8.4E-07 52.6 2.9 26 265-290 5-30 (209)
477 TIGR01287 nifH nitrogenase iro 94.0 0.37 8E-06 47.8 10.0 23 268-290 2-24 (275)
478 COG1136 SalX ABC-type antimicr 93.9 0.033 7E-07 54.5 2.2 22 268-289 33-54 (226)
479 PF13238 AAA_18: AAA domain; P 93.9 0.035 7.6E-07 47.6 2.2 21 269-289 1-21 (129)
480 cd03238 ABC_UvrA The excision 93.9 0.04 8.7E-07 51.8 2.7 21 268-288 23-43 (176)
481 PRK10751 molybdopterin-guanine 93.7 0.05 1.1E-06 51.2 2.9 26 265-290 5-30 (173)
482 PF03205 MobB: Molybdopterin g 93.7 0.045 9.8E-07 49.5 2.6 22 268-289 2-23 (140)
483 COG1161 Predicted GTPases [Gen 93.7 0.12 2.6E-06 53.1 6.1 94 348-462 14-108 (322)
484 PRK10078 ribose 1,5-bisphospho 93.7 0.045 9.7E-07 51.3 2.6 23 268-290 4-26 (186)
485 TIGR01360 aden_kin_iso1 adenyl 93.7 0.052 1.1E-06 50.2 2.9 25 267-291 4-28 (188)
486 KOG0446 Vacuolar sorting prote 93.7 0.015 3.3E-07 65.1 -0.7 69 342-419 130-213 (657)
487 PRK14493 putative bifunctional 93.6 0.21 4.6E-06 50.3 7.5 35 343-377 87-121 (274)
488 cd03225 ABC_cobalt_CbiO_domain 93.6 0.044 9.6E-07 52.1 2.5 23 268-290 29-51 (211)
489 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.6 0.045 9.8E-07 52.3 2.5 23 268-290 32-54 (218)
490 PF03266 NTPase_1: NTPase; In 93.6 0.047 1E-06 50.9 2.5 23 268-290 1-23 (168)
491 cd03261 ABC_Org_Solvent_Resist 93.5 0.047 1E-06 52.9 2.5 23 268-290 28-50 (235)
492 cd01130 VirB11-like_ATPase Typ 93.5 0.05 1.1E-06 51.1 2.6 23 267-289 26-48 (186)
493 PRK06217 hypothetical protein; 93.5 0.056 1.2E-06 50.5 2.9 25 267-291 2-26 (183)
494 TIGR00960 3a0501s02 Type II (G 93.5 0.048 1E-06 52.1 2.5 23 268-290 31-53 (216)
495 PLN02200 adenylate kinase fami 93.5 0.087 1.9E-06 51.7 4.3 30 263-292 40-69 (234)
496 TIGR01166 cbiO cobalt transpor 93.4 0.05 1.1E-06 50.9 2.5 23 268-290 20-42 (190)
497 TIGR02322 phosphon_PhnN phosph 93.4 0.048 1E-06 50.4 2.3 23 268-290 3-25 (179)
498 TIGR02673 FtsE cell division A 93.4 0.051 1.1E-06 51.7 2.5 23 268-290 30-52 (214)
499 cd03222 ABC_RNaseL_inhibitor T 93.4 0.049 1.1E-06 51.3 2.3 22 268-289 27-48 (177)
500 cd03226 ABC_cobalt_CbiO_domain 93.4 0.051 1.1E-06 51.5 2.5 23 268-290 28-50 (205)
No 1
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-35 Score=310.93 Aligned_cols=211 Identities=56% Similarity=0.967 Sum_probs=204.2
Q ss_pred cCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe
Q 012085 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (471)
Q Consensus 260 ~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~ 339 (471)
....+..++++|+|++++|||||+++|++.++.+.++.+++++.++...|+++|.|+|.++.+.+|+++|+|+++....|
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 340 ~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
+.....++|+|+|||.+|...++.++.+||++|||||++.+.++.+|+ ..+|++||+.+++.+|+.++||++||||++.
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 999999999999999999999999999999999999999999999999 7899999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHH-HhcCCCCCCccEEEEecccCCCccccCCcCccCCC
Q 012085 420 YSKDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSW 471 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l-~~~g~~~~~i~IIpvSAktG~gI~e~~~~~~~~~W 471 (471)
|++++|++|+..|..+| +.+||...++.|||||++.|+||....+...+..|
T Consensus 330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~W 382 (603)
T KOG0458|consen 330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQW 382 (603)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhh
Confidence 99999999999999999 88999999999999999999999999999999999
No 2
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.9e-34 Score=289.94 Aligned_cols=205 Identities=48% Similarity=0.860 Sum_probs=196.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++++++|++++|||||+++|+++.+.+..+++.+++.++...++.+|.|+|.+|.+.+|+++|+|++..+..|+.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.|+|+|+|||++|...|+.++.+||++|||||+..+++|+++ ...+|++||+-+++.+|+.++||++||||++.|++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~-~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGF-GVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcccccc-ccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 99999999999999999999999999999999999999999999 47899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCcCccCCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDGRLLSW 471 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~~~~~~W 471 (471)
++++++...+..+++.+||.+.+++||||||..|+||.+.. ..+-|
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s---~~~pW 208 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS---ENMPW 208 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC---cCCcC
Confidence 99999999999999999999888999999999999999987 35555
No 3
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=5.4e-28 Score=256.27 Aligned_cols=200 Identities=45% Similarity=0.854 Sum_probs=183.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+++|++++|||||+.+|+...+.+....+..+.+.+...+++++.|++.+|...+|+.+|+|++.....+++.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35678999999999999999999999999998888888888888999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC--CCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD--AVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD--l~~~ 420 (471)
+..++|+|||||++|...+..++..+|++|||||+..|.++.++.. ..++++++.++..+++|++|||+|||| ++.+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999876666652 579999999999999998999999999 5556
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
++++++++.+++..++...++...+++|||+||++|+||.+..
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~ 205 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKS 205 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCC
Confidence 7788999999999999999997777999999999999998754
No 4
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.95 E-value=8.1e-28 Score=254.88 Aligned_cols=201 Identities=43% Similarity=0.822 Sum_probs=180.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+++|+.++|||||+.+|+...+.+....+.++..+....++..+.|++.+|...+|+.+|+|++.....+++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 35678999999999999999999999999988887777777777777788999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC--CC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV--QY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~--~~ 420 (471)
++.++|+|||||++|...+..++..+|++|+|||+..+.++..+. ...++++++.++..+++|++|||+||||+. .+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~-~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGIS-KDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccC-CCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 999999999999999999999999999999999999886655544 247899999999999998899999999987 34
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++++.+++..+++..|+...+++|||+||++|+||.+...
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~ 206 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERST 206 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccccccc
Confidence 56789999999999999999987778999999999999987643
No 5
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.95 E-value=3e-27 Score=249.17 Aligned_cols=194 Identities=46% Similarity=0.818 Sum_probs=175.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|++++|||||+++|++..+.+....+.++..++...++.++.|++.+|...+|+.+|+|++.....++..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 35678999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCC--CccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASV--GSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~--g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
+..+.|||||||++|...+..++..+|++|||+|+.. + +..++++++.++..++++++|||+||+|+..+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~--------~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGG--------VMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCC--------CCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 9999999999999999999899999999999999986 4 45677888888888888779999999999865
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++++.+.+++..+++..++....++|+|+||++|+||.+++.
T Consensus 155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 56677788888999988888866567899999999999998764
No 6
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.95 E-value=9.3e-27 Score=224.54 Aligned_cols=197 Identities=53% Similarity=0.952 Sum_probs=166.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++++|||||+.+|+...+.+....+..+.......+..++.|++.++....++.+|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999999998888776655666666667777888999999999999999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--CChhhH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YSKDRF 425 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~--~~~e~~ 425 (471)
|||||||.+|...+..++..+|++|+|||+..+.++..+. ...++.+++.++...+.+|+|||+||+|+.. +....+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFE-KGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccc-cccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 9999999999999999999999999999999763322221 2346667777777778777999999999984 335567
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.+.+.+..+++..++....++|+|+||++|.||.++...
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~ 199 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSEN 199 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCC
Confidence 8888888888888888766789999999999999987644
No 7
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=1.4e-26 Score=243.03 Aligned_cols=187 Identities=39% Similarity=0.647 Sum_probs=169.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCC--ccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~--s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
++|+|+|++++|||||+++|++..+.+..+.+.++.+++...++. +|.|+|.+|...+|+.+|+|++.....+.+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999999999999888888888888777764 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+.|||||||++|...+..++..+|++|+|||+..+ +..++++++.++..++++++|||+||||+..+..+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~ 152 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEV 152 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccchHHH
Confidence 999999999999999999999999999999999987 567889999999999988899999999998766677
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
++++.+.+..+++.+++. +++|+|+||++|+||.++.
T Consensus 153 ~~~i~~~~~~~~~~~~~~--~~~iipiSA~~g~ni~~~~ 189 (406)
T TIGR02034 153 FENIKKDYLAFAEQLGFR--DVTFIPLSALKGDNVVSRS 189 (406)
T ss_pred HHHHHHHHHHHHHHcCCC--CccEEEeecccCCCCcccc
Confidence 888888888888887773 5789999999999999765
No 8
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.94 E-value=2.8e-26 Score=219.42 Aligned_cols=187 Identities=37% Similarity=0.624 Sum_probs=158.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|++|+|||||+++|++..+.+....+..+.......++..+.+.+.++....++.+|+|++.....+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999888766555566566666777778889999999999999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
||||||+++|...+..++..+|++|+|+|+..+ ...+...+..++...+.|++|+|+||+|+.....+.++.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~ 152 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHH
Confidence 999999999988888899999999999999977 345566667777777777788899999998655556677
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+...+..+++.+++. .+++|++||++|.||.+...
T Consensus 153 i~~~~~~~~~~~~~~--~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 153 IVADYLAFAAKLGIE--DITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHHHHHHHHHHcCCC--CceEEEEeCCCCCCCccCCC
Confidence 788888888888763 35789999999999998764
No 9
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.94 E-value=2.5e-26 Score=242.29 Aligned_cols=198 Identities=44% Similarity=0.826 Sum_probs=175.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+|+|++++|||||+++|+...+.+....+.++.+++...+++++.|++.++...+++.+|+|++.....+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 45678999999999999999999999999988888888888888899999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||++|...+..++..+|++|||+|++.+.++ ...++.+++.++..++.+++|||+||+|+..+..
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 99999999999999999999999999999999999987432 2346677777777778777999999999987666
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.++.+.+++..+++..++....++|+|+||++|+||.+++..
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~ 201 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSEN 201 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccC
Confidence 7788888999999998888766789999999999999987653
No 10
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=1.5e-26 Score=246.93 Aligned_cols=204 Identities=36% Similarity=0.568 Sum_probs=175.9
Q ss_pred CCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCC--ccchhccccccccc
Q 012085 248 QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKG--SFAYAWALDESAEE 325 (471)
Q Consensus 248 ~~~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~--s~~~~~~~d~~~~e 325 (471)
+-.+|.|+... +.+..++|+|+|++++|||||+++|++..+.+..+.+.++.+++...++. ++.+++.+|...+|
T Consensus 12 ~~~~~~~~~~~---~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eE 88 (474)
T PRK05124 12 EGGVEAYLHAQ---QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAE 88 (474)
T ss_pred hhhHHHHHhhc---cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHH
Confidence 33455554332 34667999999999999999999999999999888888888888777764 78899999999999
Q ss_pred cccceEEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC
Q 012085 326 RERGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV 405 (471)
Q Consensus 326 ~~~GiTi~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v 405 (471)
+.+|+|++.....+...+..++|||||||++|...+..++..+|++|||||+..+ +..++++++.++..+++
T Consensus 89 r~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~ 160 (474)
T PRK05124 89 REQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGI 160 (474)
T ss_pred hhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987 45678888888888888
Q ss_pred CeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 406 p~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+++|||+||||+..+..+.++++.+.+..+++.+++. ..++|||+||++|+||.++.
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCccccc
Confidence 7799999999998766667888888888888777642 35789999999999999865
No 11
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.3e-26 Score=228.08 Aligned_cols=193 Identities=37% Similarity=0.612 Sum_probs=176.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhc--CCCccchhccccccccccccceEEEEEEEEec
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQ--GKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~--~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
.+..++++-+|.++-||||||+||++....+....+.......... ....+.|+...|....|++.|+|+++.+.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999999998888777777766655422 33467789999999999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
...++|.|.|||||++|..+|..+..-||++|++||+..| +..|++.|.-++..+|++++||++|||||+++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHHHHHHHhCCcEEEEEEeeeccccc
Confidence 9999999999999999999999999999999999999988 78999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
++++|++|...+..+...+++.. +.+||+||+.|+||...+.-
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~--~~~IPiSAl~GDNV~~~s~~ 197 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKD--VRFIPISALLGDNVVSKSEN 197 (431)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc--ceEEechhccCCcccccccC
Confidence 99999999999999999999865 58999999999999987644
No 12
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.93 E-value=9.1e-25 Score=207.70 Aligned_cols=172 Identities=34% Similarity=0.549 Sum_probs=146.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|++++|||||+++|++... ..++........++....|+.+|+|++.....++..+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~ 66 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRH 66 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCeE
Confidence 47899999999999999999996421 111111111246788899999999999999999989999
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhH
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
+.|+|||||.+|...+...+..+|++|+|+|+..+ ...++++++.++...++|++|+|+||||+.. ..+.+
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~ 137 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELL 137 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHH
Confidence 99999999999999999999999999999999977 5678899999999999987889999999973 45566
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
+.+.+++..++..+++...+++|+|+||++|.|+.+
T Consensus 138 ~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~ 173 (195)
T cd01884 138 ELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGDD 173 (195)
T ss_pred HHHHHHHHHHHHHhcccccCCeEEEeeCccccCCCC
Confidence 778889999999999877789999999999999864
No 13
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.92 E-value=6.1e-25 Score=242.43 Aligned_cols=191 Identities=38% Similarity=0.621 Sum_probs=170.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCC--CccchhccccccccccccceEEEEEEEEecC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~--~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
...++|+|+|++++|||||+++|++..+.+....+.++..+....++ ..+.+++.++...+|+.+|+|++.....++.
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34578999999999999999999999999988878888888888877 7889999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||||+..+ +..++++++.++..++++++|||+||+|++.+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 999999999999999999999999999999999999977 456788888888888888799999999998666
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.++++++...+..+++.+++ ..++|+|+||++|.||.+...
T Consensus 174 ~~~~~~i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~ 214 (632)
T PRK05506 174 QEVFDEIVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSA 214 (632)
T ss_pred hHHHHHHHHHHHHHHHHcCC--CCccEEEEecccCCCcccccc
Confidence 67788888888888888887 346899999999999997653
No 14
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=9.1e-25 Score=205.20 Aligned_cols=174 Identities=38% Similarity=0.629 Sum_probs=144.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--CC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SK 342 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~ 342 (471)
+.++|+|+|+.++|||||+++|++..+......... ......+....++..++|+......+. ..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~ 68 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEE-------------TKNAFLDKHPEERERGITIDLSFISFEKNEN 68 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHH-------------HHHCHHHSSHHHHHCTSSSSSEEEEEEBTES
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccc-------------cccccccccchhhhccccccccccccccccc
Confidence 568999999999999999999998776654432211 001235667788888999988888887 88
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
...++|+|||||.+|...+..++..+|++|+|||+..+ +..++.+++.++..+++| +|||+||||+. .
T Consensus 69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---~ 136 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLI---E 136 (188)
T ss_dssp SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSS---H
T ss_pred ccceeecccccccceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccch---h
Confidence 99999999999999999999999999999999999988 678999999999999999 99999999998 4
Q ss_pred hhHHHHHHHHH-HHHHhcCCCC-CCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLG-TFLRSCGFKD-ASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~-~~l~~~g~~~-~~i~IIpvSAktG~gI~e~~ 463 (471)
.+++++.+++. .+++..++.. ..++|+|+||++|.|+.++.
T Consensus 137 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 137 KELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELL 179 (188)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHH
T ss_pred hhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHH
Confidence 56667777777 5667777765 36899999999999998754
No 15
>CHL00071 tufA elongation factor Tu
Probab=99.90 E-value=2.6e-23 Score=218.46 Aligned_cols=179 Identities=31% Similarity=0.496 Sum_probs=151.1
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
...+..++|+++|++++|||||+++|++..+.+..... .. ...++....++.+|+|++.....+.
T Consensus 7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~--------------~~-~~~~d~~~~e~~rg~T~~~~~~~~~ 71 (409)
T CHL00071 7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKA--------------KK-YDEIDSAPEEKARGITINTAHVEYE 71 (409)
T ss_pred cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccc--------------cc-cccccCChhhhcCCEeEEccEEEEc
Confidence 34567799999999999999999999986655432211 11 1257888899999999999888888
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..+.|+|||||.+|...+..++..+|++|+|+|+..+ +..++++++.++..+++|++|+|+||+|++..
T Consensus 72 ~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD 143 (409)
T ss_pred cCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH
Confidence 8889999999999999999999999999999999999977 56899999999999999878899999999853
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.+.++.+.+++..+|+..++....++|+|+||++|.|+.+..
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~ 185 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTEN 185 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccC
Confidence 445677888999999998887666899999999999887543
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.90 E-value=6e-23 Score=214.78 Aligned_cols=173 Identities=35% Similarity=0.537 Sum_probs=145.0
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
...++.++|+++|++++|||||+++|++... ..+++.+...+.++...+|+.+|+|++.....+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~ 71 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE 71 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEec
Confidence 3456679999999999999999999984321 1233333333468999999999999999988888
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..+.|||||||++|...+..++..+|++|+|+|+..+ +..++++++.++..+++|++|||+||+|++.
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~- 142 (394)
T PRK12736 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVD- 142 (394)
T ss_pred CCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcc-
Confidence 8888999999999999999999999999999999999977 5678999999999999987889999999974
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~ 457 (471)
..+.++.+.+++..+++..++....++|+|+||++|.
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccc
Confidence 2345566777899999888887667899999999984
No 17
>PLN03126 Elongation factor Tu; Provisional
Probab=99.89 E-value=7.4e-23 Score=218.41 Aligned_cols=174 Identities=34% Similarity=0.546 Sum_probs=149.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+++|++++|||||+++|++..+.+....... ...+|...+++.+|+|++.....++..
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~~ 142 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYETE 142 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEecC
Confidence 45678999999999999999999998766543322111 125788889999999999998889889
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..+.|||||||++|...+..++..+|++|+|||+..+ ...++++++.++..+++|++||++||||++. ..
T Consensus 143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~~ 213 (478)
T PLN03126 143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DE 213 (478)
T ss_pred CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccC-HH
Confidence 99999999999999999999999999999999999987 5689999999999999988899999999985 34
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
+.++.+.+++..+++.++|...+++|+|+||++|.++.
T Consensus 214 ~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~ 251 (478)
T PLN03126 214 ELLELVELEVRELLSSYEFPGDDIPIISGSALLALEAL 251 (478)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccccc
Confidence 55777888999999999887667999999999998774
No 18
>PRK12735 elongation factor Tu; Reviewed
Probab=99.89 E-value=1.2e-22 Score=212.59 Aligned_cols=176 Identities=34% Similarity=0.509 Sum_probs=146.0
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
.+.++.++|+++|++++|||||+++|++... ..+...+...+.++...+++.+|+|++.....+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~ 71 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE 71 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEc
Confidence 4456779999999999999999999996321 1223333333578899999999999999888888
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..++|||||||++|...+..++..+|++|||+|+..+ ...++++++.++...++|.+|+|+||+|+..
T Consensus 72 ~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~- 142 (396)
T PRK12735 72 TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcc-
Confidence 8888999999999999999999999999999999999976 4578889999999999986667899999974
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
..+.++.+..++..+++.+++...+++|+|+||++|.|..
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~ 182 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGD 182 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCC
Confidence 3445667777888999888876556899999999998753
No 19
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.89 E-value=1.6e-22 Score=211.52 Aligned_cols=171 Identities=35% Similarity=0.532 Sum_probs=143.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+++|++++|||||+++|++... ..++..+...+.++...+|+++|+|++.....++..
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~ 73 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE 73 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcCC
Confidence 45679999999999999999999985311 122333333457899999999999999998888888
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..+.|||||||++|...+..++..+|++|+|+|+..+ ...++++++.++..+++|++|+|+||||+... .
T Consensus 74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~-~ 144 (394)
T TIGR00485 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDD-E 144 (394)
T ss_pred CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCH-H
Confidence 88999999999999999999999999999999999987 46788999999999999977789999999842 3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~ 457 (471)
+.++.+.++++.+++..++...+++|+++||++|.
T Consensus 145 ~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 145 ELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 45666777888999888876556899999999985
No 20
>PRK00049 elongation factor Tu; Reviewed
Probab=99.89 E-value=4.1e-22 Score=208.65 Aligned_cols=174 Identities=33% Similarity=0.517 Sum_probs=144.0
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
...+..++|+++|++++|||||+++|++... ..+.........++...+|+.+|+|++.....+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~ 71 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE 71 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEc
Confidence 3456779999999999999999999996321 1111121122368888999999999999988888
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..+.|+|||||.+|...+..++..+|++|+|+|+..+ ...++++++.++..+++|.+||++||+|+..
T Consensus 72 ~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~- 142 (396)
T PRK00049 72 TEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVD- 142 (396)
T ss_pred CCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcc-
Confidence 8888999999999999999999999999999999999977 5678999999999999985567899999974
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g 458 (471)
..+.++.+..++..++..+++...+++|+|+||++|.+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccC
Confidence 34556677788999999888866678999999999865
No 21
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=6.8e-22 Score=178.27 Aligned_cols=157 Identities=30% Similarity=0.507 Sum_probs=111.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-CeEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 346 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~l 346 (471)
.|+|+|.+|||||||+++|++... +....+..+++|+......+... +..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~----------------------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET----------------------------DRLPEEKKRGITIDLGFAYLDLPSGKRL 53 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc----------------------------ccchhhhccCceEEeeeEEEEecCCcEE
Confidence 699999999999999999985210 11122233455555544444444 6789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
.||||||+++|...+..+++.+|++|+|+|+..+ ...+..+.+.++...+.+|+|+|+||+|+.. .....
T Consensus 54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~--~~~~~ 123 (164)
T cd04171 54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVD--EDWLE 123 (164)
T ss_pred EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccC--HHHHH
Confidence 9999999999988888889999999999999864 2234445555555566645999999999974 22333
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.+...++..+. ...+++++||++|+|+.+++.
T Consensus 124 ~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 124 LVEEEIRELLAGTFL--ADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred HHHHHHHHHHHhcCc--CCCcEEEEeCCCCcCHHHHHH
Confidence 444555555554332 246899999999999998754
No 22
>PLN03127 Elongation factor Tu; Provisional
Probab=99.87 E-value=3.5e-21 Score=204.28 Aligned_cols=172 Identities=36% Similarity=0.585 Sum_probs=140.4
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhc-cccccccccccceEEEEEEEEec
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAW-ALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~-~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
..+..++|+++|++++|||||+++|++... ..++.. .+.+ .+|...+|+.+|+|++.....++
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~ 120 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAK-AVAFDEIDKAPEEKARGITIATAHVEYE 120 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHH---------------Hhhccc-ceeeccccCChhHhhcCceeeeeEEEEc
Confidence 456779999999999999999999974210 111111 1111 57888999999999999999999
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+.+++|+|||||.+|...+..++..+|++|||+|+..+ ...++++++.++..+++|.+|+|+||||++.
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~- 191 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVD- 191 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCC-
Confidence 9999999999999999999999999999999999999977 5678999999999999986788999999985
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecc---cCCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL---ENQN 458 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk---tG~g 458 (471)
..+.++.+..++..++..+++....++|+|+||+ +|.|
T Consensus 192 ~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 192 DEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCC
Confidence 2345566666888888887876567899999886 4555
No 23
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.7e-22 Score=200.22 Aligned_cols=206 Identities=45% Similarity=0.806 Sum_probs=191.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++++++|++.+||||+-+.|+...+.+..+++.+|+..+...++.+-...|.++...+++..|.|+.....+|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC--CCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA--VQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl--~~~ 420 (471)
..+++|+|+|||..|...++.++.+||+.+||+.+..++++.+|+. ..|+++|..+++..++.++|+++||||- ++|
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer-GgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc-ccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999999999999985 4799999999999999999999999996 467
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCC-CCccEEEEecccCCCccccCCcCccCCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLVTAPDDGRLLSW 471 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~-~~i~IIpvSAktG~gI~e~~~~~~~~~W 471 (471)
+.++++++.+.+..+|..+|+.. +.+.|+|+|.++|.++.+... ..+-|
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~--s~cpw 284 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD--SVCPW 284 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc--ccCCc
Confidence 88999999999999999888865 357899999999999998765 34545
No 24
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=8.2e-21 Score=178.92 Aligned_cols=170 Identities=27% Similarity=0.346 Sum_probs=123.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|++++|||||+++|++..+....... .. .+.++....+...|+++......+......
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~--------------~~-~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE--------------VE-ERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc--------------cc-ccccccchhHHhcccccccceeEEEECCEE
Confidence 468999999999999999999964333322110 00 123444555667788877777777778899
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhH
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
+.||||||+++|...+..+++.+|++|+|+|+..+. ..+..+++..+...++| +++|+||+|+... ..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~--------~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~---~~ 134 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP--------MPQTRFVLKKALELGLK-PIVVINKIDRPDA---RP 134 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEEECCCCCCC---CH
Confidence 999999999999999999999999999999998752 23445555556666777 8999999999742 23
Q ss_pred HHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCcccc
Q 012085 426 DSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~ 462 (471)
..+.+.+..++..++.. ...++++++||++|.|+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 135 EEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 34455555555444332 22568999999999999763
No 25
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=7.3e-21 Score=207.88 Aligned_cols=158 Identities=32% Similarity=0.501 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+++|++++|||||+++|++.. .+...++..+|+|++.....+...+..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~----------------------------~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA----------------------------ADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc----------------------------CcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 369999999999999999998521 2334556678999988888888888999
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
.|||||||+.|...+..++..+|++|||||+..+ ...++.+++.++...++|++|||+||+|++ ..+.++
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~~~~~~ 122 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRV--NEEEIK 122 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCC--CHHHHH
Confidence 9999999999999999999999999999999987 457888999999989998899999999998 345566
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.+.+.+..+++..++.. .++|||+||++|+||.+++
T Consensus 123 ~~~~ei~~~l~~~~~~~-~~~ii~vSA~tG~GI~eL~ 158 (581)
T TIGR00475 123 RTEMFMKQILNSYIFLK-NAKIFKTSAKTGQGIGELK 158 (581)
T ss_pred HHHHHHHHHHHHhCCCC-CCcEEEEeCCCCCCchhHH
Confidence 67777888887766532 4789999999999998865
No 26
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=8.6e-21 Score=174.75 Aligned_cols=165 Identities=30% Similarity=0.443 Sum_probs=113.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe-----cC
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-----DS 341 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-----~~ 341 (471)
++|+++|++++|||||+++|++..+.+..... ..++.+....++..|++.......+ ..
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~----------------~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREM----------------KEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCC----------------ceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 47999999999999999999976544322110 0133444555666777765444333 44
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
....++||||||+++|...+..+++.+|++|+|+|++.+.. .+....+..+...++| +|+|+||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~--------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~ 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE--------AQTLANFYLALENNLE-IIPVINKIDLPSAD 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc--------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC
Confidence 67789999999999999999999999999999999987622 2223333334455666 99999999986422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+.+.+. +++. ...++++||++|+||.+++.
T Consensus 136 ---~~~~~~~~~~~---~~~~--~~~~~~~Sa~~g~gi~~l~~ 170 (179)
T cd01890 136 ---PERVKQQIEDV---LGLD--PSEAILVSAKTGLGVEDLLE 170 (179)
T ss_pred ---HHHHHHHHHHH---hCCC--cccEEEeeccCCCCHHHHHH
Confidence 22223333332 3431 23589999999999998764
No 27
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.85 E-value=6.1e-21 Score=181.88 Aligned_cols=159 Identities=30% Similarity=0.392 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-----
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 341 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----- 341 (471)
++|+|+|+.|+|||||+.+|.+.. .+....+...+.++......+.+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~----------------------------~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVW----------------------------TVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC----------------------------CCCCCeeEEcCCceeecccccccccccC
Confidence 479999999999999999997421 12222333333333333222221
Q ss_pred ----------------------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHH
Q 012085 342 ----------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT 393 (471)
Q Consensus 342 ----------------------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~ 393 (471)
....++|||||||++|...+..++..+|++|+|+|+..+. ...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~-------~~~~t 125 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC-------PQPQT 125 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC-------CCcch
Confidence 1268999999999999999999999999999999999641 12345
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 394 ~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++..+...+.+|+|||+||+|+.. ...+....+.++.++..... ..+++|++||++|+||.+++.
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~--~~~~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g~gi~~L~~ 192 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVK--EEQALENYEQIKKFVKGTIA--ENAPIIPISAQLKYNIDVLLE 192 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccC--HHHHHHHHHHHHHHHhcccc--CCCcEEEEeCCCCCCHHHHHH
Confidence 56666666677767999999999974 23344444555555543321 246899999999999988754
No 28
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=7.6e-21 Score=178.87 Aligned_cols=162 Identities=30% Similarity=0.469 Sum_probs=114.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC----
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---- 342 (471)
+||+|+|++|+|||||+++|++..+ ...++....+..+|+|+......+...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4799999999999999999984210 112344445566777776655444333
Q ss_pred ----------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 343 ----------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
+..++||||||+..+...+...+..+|++|+|+|+..+. ..+..+.+.++...+.| +++|+
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~--------~~~~~~~~~~~~~~~~~-~iiv~ 127 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGI--------QTQTAECLVIGEILCKK-LIVVL 127 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc--------cHHHHHHHHHHHHcCCC-EEEEE
Confidence 678999999999888888888888899999999999762 23334444455556665 99999
Q ss_pred eCCCCCCCCh--hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 413 NKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 413 NKiDl~~~~~--e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
||+|+..... ...+++.+.+...+.+.++ ..++|+++||++|+|+.++.
T Consensus 128 NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~vi~iSa~~g~gi~~L~ 178 (192)
T cd01889 128 NKIDLIPEEERERKIEKMKKKLQKTLEKTRF--KNSPIIPVSAKPGGGEAELG 178 (192)
T ss_pred ECcccCCHHHHHHHHHHHHHHHHHHHHhcCc--CCCCEEEEeccCCCCHHHHH
Confidence 9999974221 2234444444444444444 35789999999999998864
No 29
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=1.3e-20 Score=173.79 Aligned_cols=171 Identities=39% Similarity=0.591 Sum_probs=125.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|+|||||+|+|++........... ....++....+...+++.......+......+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTV---------------EETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCce---------------ecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 48999999999999999999765543322111 002233344455667777666666777788999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
||||||+.++...+..+++.+|++|+|+|+..+ ......+++..+...+.| +++|+||+|+.. .+.+..
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~--~~~~~~ 134 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVG--EEDLEE 134 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcc--hhcHHH
Confidence 999999999988899999999999999999876 233455566666666666 999999999984 344455
Q ss_pred HHHHHHHHHHhcCC---------CCCCccEEEEecccCCCccccCC
Q 012085 428 IKVQLGTFLRSCGF---------KDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 428 i~~~L~~~l~~~g~---------~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+.+.+.++..+. .....+|+++||++|.|+.+++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~ 180 (189)
T cd00881 135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLE 180 (189)
T ss_pred HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHH
Confidence 56666666665543 23467899999999999988653
No 30
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.84 E-value=1.6e-20 Score=206.14 Aligned_cols=157 Identities=31% Similarity=0.500 Sum_probs=132.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-CCeEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYHV 346 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~l 346 (471)
.|+++|++++|||||+++|++. .++...+++.+|+|++..+..+.. .+..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~----------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i 53 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV----------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC----------------------------CCccchhcccCCceEEeeeEEEecCCCcEE
Confidence 5899999999999999999852 134556777899999888776655 35678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
.|||||||++|...+..++..+|++|+|||+..+ +..++++++.++..++++++|||+||+|++ ..++++
T Consensus 54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv--~~~~~~ 123 (614)
T PRK10512 54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRV--DEARIA 123 (614)
T ss_pred EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccC--CHHHHH
Confidence 9999999999999999999999999999999987 568999999999999998778999999997 456677
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+.+.+..++...++. .++|||+||++|+||.++..
T Consensus 124 ~v~~ei~~~l~~~~~~--~~~ii~VSA~tG~gI~~L~~ 159 (614)
T PRK10512 124 EVRRQVKAVLREYGFA--EAKLFVTAATEGRGIDALRE 159 (614)
T ss_pred HHHHHHHHHHHhcCCC--CCcEEEEeCCCCCCCHHHHH
Confidence 7788888888777663 46899999999999987643
No 31
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=2e-20 Score=196.45 Aligned_cols=161 Identities=30% Similarity=0.461 Sum_probs=120.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec---
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--- 340 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--- 340 (471)
+..++|+++|++++|||||+++|++. .++...+++++|+|+......+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~----------------------------~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV----------------------------WTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe----------------------------ecccCHhHHHcCceeEeccccccccc
Confidence 56789999999999999999999731 13444556666777665533221
Q ss_pred -----------C------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHH
Q 012085 341 -----------S------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (471)
Q Consensus 341 -----------~------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l 397 (471)
. ....++|||||||++|...+..++..+|++|||||+..+. ...++.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l 126 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHL 126 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHH
Confidence 0 1467999999999999999999999999999999999762 146778888
Q ss_pred HHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 398 ~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.++..++++++|||+||+|+... +...+..+.+..++.... ...++|+|+||++|+|+.+++
T Consensus 127 ~~l~~~gi~~iIVvvNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gi~~L~ 188 (406)
T TIGR03680 127 MALEIIGIKNIVIVQNKIDLVSK--EKALENYEEIKEFVKGTV--AENAPIIPVSALHNANIDALL 188 (406)
T ss_pred HHHHHcCCCeEEEEEEccccCCH--HHHHHHHHHHHhhhhhcc--cCCCeEEEEECCCCCChHHHH
Confidence 88888888889999999999842 233333445555554332 134689999999999997654
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=4.5e-20 Score=201.73 Aligned_cols=166 Identities=28% Similarity=0.345 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|++++|||||+++|+...+.+...... -.+.+|....++++|+|+......+.+.+..+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v---------------~~~~~D~~~~ErerGiTI~~~~~~v~~~~~ki 66 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAV---------------AERVMDSNDLERERGITILAKNTAIRYNGTKI 66 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccc---------------eeecccCchHHHhCCccEEeeeEEEEECCEEE
Confidence 589999999999999999999776655432100 02478889999999999999988999999999
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
+|||||||.+|...+..+++.+|++|||||+..+ ...+++.++..+...++| +|||+||+|+... +++
T Consensus 67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a---~~~ 134 (594)
T TIGR01394 67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPSA---RPD 134 (594)
T ss_pred EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc---CHH
Confidence 9999999999999999999999999999999977 467889999999999998 7999999999643 344
Q ss_pred HHHHHHHHHHHhcCCCC--CCccEEEEecccCCCc
Q 012085 427 SIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNL 459 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~--~~i~IIpvSAktG~gI 459 (471)
++...+..++..++... ..++++++||++|.+.
T Consensus 135 ~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~ 169 (594)
T TIGR01394 135 EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS 169 (594)
T ss_pred HHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence 55666666665555432 2468999999999753
No 33
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.83 E-value=2.5e-20 Score=197.99 Aligned_cols=163 Identities=27% Similarity=0.371 Sum_probs=126.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD- 340 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~- 340 (471)
.++..++|+++||.++|||||+.+|++.. .+.+.+|..+|+|+++.+..+.
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~----------------------------~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGVK----------------------------TVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCCC----------------------------cccchhhHHhCCchhcccccccc
Confidence 45677999999999999999999999521 2334556666666655544321
Q ss_pred --------------C------------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccch
Q 012085 341 --------------S------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNT 388 (471)
Q Consensus 341 --------------~------------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~ 388 (471)
. ....+.|+|||||++|...+..++..+|++|||||+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------- 154 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------- 154 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------
Confidence 0 0247899999999999999999999999999999999641
Q ss_pred hhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 389 AKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 389 l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.+.++++++.++..++++++|||+||||++. .+.+++..+.+..+++.... ..++|||+||++|+||.++.
T Consensus 155 ~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~--~~~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G~nI~~Ll 225 (460)
T PTZ00327 155 PQPQTSEHLAAVEIMKLKHIIILQNKIDLVK--EAQAQDQYEEIRNFVKGTIA--DNAPIIPISAQLKYNIDVVL 225 (460)
T ss_pred cchhhHHHHHHHHHcCCCcEEEEEecccccC--HHHHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCCCCHHHHH
Confidence 3578899999999999988999999999983 44556666677776655322 45789999999999997643
No 34
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.83 E-value=4.4e-20 Score=179.01 Aligned_cols=169 Identities=30% Similarity=0.377 Sum_probs=129.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC----
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---- 342 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---- 342 (471)
++|+|+|++++|||||+++|+...+.+.... .+. ..+++....|+.+|+|+......+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~------------~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL------------AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc------------CCc---eeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 4799999999999999999998766544321 111 346888889999999987664433332
Q ss_pred ------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 343 ------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
...++|||||||.+|...+..+++.+|++|+|+|+..+ ...++++++..+...++| +|+|+||+|
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 78899999999999999999999999999999999987 445777888888777887 999999999
Q ss_pred CCC--------CChhhHHHHHHHHHHHHHhcCC-------------CCCCccEEEEecccCCCc
Q 012085 417 AVQ--------YSKDRFDSIKVQLGTFLRSCGF-------------KDASLTWIPLSALENQNL 459 (471)
Q Consensus 417 l~~--------~~~e~~eei~~~L~~~l~~~g~-------------~~~~i~IIpvSAktG~gI 459 (471)
+.. +...++.++.+++..++..+.- .+..=.++..||+.|..+
T Consensus 137 ~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 137 RLILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred cchhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 861 1134567777777777766521 111123788999999876
No 35
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.82 E-value=5.5e-20 Score=178.57 Aligned_cols=168 Identities=27% Similarity=0.349 Sum_probs=120.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEE-----------
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV----------- 336 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~----------- 336 (471)
+|+|+|+.++|||||+++|+...-.. +.......++.+..|.+.|.|..+..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~-----------------~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~ 63 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN-----------------GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEV 63 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC-----------------CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCce
Confidence 48999999999999999998421110 00011112233333333333321111
Q ss_pred -------------EEecCCCeEEEEEeCCCCCCchhhhhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH
Q 012085 337 -------------AYFDSKNYHVVVLDSPGHKDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 401 (471)
Q Consensus 337 -------------~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~ 401 (471)
..++..+..++|+|||||++|...+..++. .+|++++|+|+..+ ...++++++.++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~ 135 (224)
T cd04165 64 VNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLAL 135 (224)
T ss_pred ecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHH
Confidence 223445678999999999999999988886 79999999999977 4678899999999
Q ss_pred hcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC---------------------CCCccEEEEecccCCCcc
Q 012085 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK---------------------DASLTWIPLSALENQNLV 460 (471)
Q Consensus 402 ~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~---------------------~~~i~IIpvSAktG~gI~ 460 (471)
..++| +|+|+||+|+. ...++......+...++..++. ...++||++||.+|+|+.
T Consensus 136 ~~~ip-~ivvvNK~D~~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~ 212 (224)
T cd04165 136 ALNIP-VFVVVTKIDLA--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLD 212 (224)
T ss_pred HcCCC-EEEEEECcccc--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHH
Confidence 99998 89999999997 4556777777777777643332 123589999999999998
Q ss_pred ccC
Q 012085 461 TAP 463 (471)
Q Consensus 461 e~~ 463 (471)
++.
T Consensus 213 ~L~ 215 (224)
T cd04165 213 LLH 215 (224)
T ss_pred HHH
Confidence 753
No 36
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.5e-20 Score=194.10 Aligned_cols=169 Identities=33% Similarity=0.412 Sum_probs=142.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.+|++||.|.++|||||..+|+..++.+.....+ ..++|..+.|+++|+|+......+.+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q----------------~q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQ----------------EQVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCch----------------hhhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 456889999999999999999999888766554322 5688999999999999987777776666
Q ss_pred ---eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 344 ---YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ---~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
+.++|||||||.+|..+..+.+..|+++|||||+.+| .++|+...+-++-+.+.. +|.|+||||+..+
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qG--------vqAQT~anf~lAfe~~L~-iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQG--------VQAQTVANFYLAFEAGLA-IIPVLNKIDLPSA 192 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcC--------chHHHHHHHHHHHHcCCe-EEEeeeccCCCCC
Confidence 9999999999999999999999999999999999999 789999999999999988 9999999999876
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.+ ++..++..++.. +...++.+||++|.|+.++++.
T Consensus 193 dpe---~V~~q~~~lF~~-----~~~~~i~vSAK~G~~v~~lL~A 229 (650)
T KOG0462|consen 193 DPE---RVENQLFELFDI-----PPAEVIYVSAKTGLNVEELLEA 229 (650)
T ss_pred CHH---HHHHHHHHHhcC-----CccceEEEEeccCccHHHHHHH
Confidence 544 455666666532 2347799999999999876543
No 37
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=8.4e-20 Score=189.54 Aligned_cols=159 Identities=26% Similarity=0.337 Sum_probs=134.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.||+|||||+|+|+++...+... ..|.|++.....+++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~------------------------------~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSD------------------------------IAGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecC------------------------------CCCccccceeeeEEECC
Confidence 357899999999999999999999876665543 48899999999999999
Q ss_pred eEEEEEeCCCCCC----------c-hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 344 YHVVVLDSPGHKD----------F-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e~----------f-~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
..+.||||+|..+ | .......+..+|++++|+|++.+ +..|...++.++.+.+.+ +|||+
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~-~vIvv 296 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRG-IVIVV 296 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCC-eEEEE
Confidence 9999999999543 2 23346677889999999999998 678999999999999988 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
||+|++..+...+++.+..+...+..++| .+++++||++|.|+.+++..
T Consensus 297 NKWDl~~~~~~~~~~~k~~i~~~l~~l~~----a~i~~iSA~~~~~i~~l~~~ 345 (444)
T COG1160 297 NKWDLVEEDEATMEEFKKKLRRKLPFLDF----APIVFISALTGQGLDKLFEA 345 (444)
T ss_pred EccccCCchhhHHHHHHHHHHHHhccccC----CeEEEEEecCCCChHHHHHH
Confidence 99999976556778888888888877766 57899999999999887654
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=5.9e-20 Score=167.05 Aligned_cols=159 Identities=20% Similarity=0.220 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++|+|||||+++|++....... .. .. ....|+......+...+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~-----------------------~~--~~--~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG-----------------------LP--PS--KITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC-----------------------Cc--cc--ccCCccccceEEEEECCEEEE
Confidence 5899999999999999999853221000 00 00 011122222233444678999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||||++.+...+...+..+|++|+|+|+.... .+.....++..+++ ..++| +|||+||+|+... ..
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~--~~ 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRE------RFEESKSALEKVLRNEALEGVP-LLILANKQDLPDA--LS 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccC--CC
Confidence 9999999999988888999999999999998541 12222223333333 23555 9999999998642 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++...+.......+. ..++++++||++|+|+.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~g~gv~e~~~ 162 (167)
T cd04160 125 VEEIKEVFQDKAEEIGR--RDCLVLPVSALEGTGVREGIE 162 (167)
T ss_pred HHHHHHHhccccccccC--CceEEEEeeCCCCcCHHHHHH
Confidence 33344444433322332 346899999999999998753
No 39
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=1.7e-19 Score=163.79 Aligned_cols=153 Identities=27% Similarity=0.370 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC---CCe
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---KNY 344 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---~~~ 344 (471)
.|+|+|.+|+|||||+++|+...... ....+.|.......+.. .+.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~ 50 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-------------------------------GEAGGITQHIGAFEVPAEVLKIP 50 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-------------------------------ccCCCeEEeeccEEEecccCCcc
Confidence 59999999999999999998421110 01123444433333433 367
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+.||||||+..+...+..++..+|++|+|+|++.+ ...+..+.+..+...++| +++|+||+|+.....+.
T Consensus 51 ~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~ 121 (168)
T cd01887 51 GITFIDTPGHEAFTNMRARGASLTDIAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPER 121 (168)
T ss_pred eEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHHH
Confidence 899999999999888888889999999999999975 234455566667777877 99999999997433222
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSC--GFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~--g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+...+..+.... .+ ...++++++||++|+|+.+++.
T Consensus 122 ---~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 122 ---VKNELSELGLQGEDEW-GGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred ---HHHHHHHhhccccccc-cCcCcEEEeecccCCCHHHHHH
Confidence 222332221110 11 1346899999999999998754
No 40
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.81 E-value=1.9e-19 Score=201.29 Aligned_cols=157 Identities=26% Similarity=0.371 Sum_probs=121.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..++++|+|+|++++|||||+++|.+.... .....|+|.......+.+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-------------------------------~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-------------------------------AGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-------------------------------ccccCceeeeccEEEEEEC
Confidence 567899999999999999999999732110 0112566766666667777
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||+.|..++.+++..+|++|||||+..+ ...++.+++..+...++| +|||+||||+.....
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~ 406 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANP 406 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCH
Confidence 88999999999999999999999999999999999987 567888889888888988 999999999975432
Q ss_pred hhHHHHHHHHHH---HHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~---~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.+...+.. +...++ ..++|||+||++|+||.+++..
T Consensus 407 ---e~V~~eL~~~~~~~e~~g---~~vp~vpvSAktG~GI~eLle~ 446 (787)
T PRK05306 407 ---DRVKQELSEYGLVPEEWG---GDTIFVPVSAKTGEGIDELLEA 446 (787)
T ss_pred ---HHHHHHHHHhcccHHHhC---CCceEEEEeCCCCCCchHHHHh
Confidence 223333322 122222 2468999999999999987654
No 41
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.81 E-value=1.9e-19 Score=179.49 Aligned_cols=167 Identities=29% Similarity=0.403 Sum_probs=131.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|++|+|||||+++|++..+.+..... ..+ -.+.++....++.+|+|++.....+.+.+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~--------v~~-----~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGE--------VHG-----GGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccccc--------ccC-----CccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 5899999999999999999987665433110 011 145678889999999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
||||||+.+|...+..+++.+|++|+|+|+..+ ...++..++.++...++| +|+++||+|+.+.. ++.
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~---~~~ 135 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVP-RIAFVNKMDRTGAD---FFR 135 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC---HHH
Confidence 999999999999999999999999999999987 456788888888888888 88999999997543 344
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccC-CCccccC
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAP 463 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG-~gI~e~~ 463 (471)
+...++..+... ....++|+||..+ .|+.++.
T Consensus 136 ~~~~l~~~l~~~----~~~~~~Pisa~~~f~g~vd~~ 168 (270)
T cd01886 136 VVEQIREKLGAN----PVPLQLPIGEEDDFRGVVDLI 168 (270)
T ss_pred HHHHHHHHhCCC----ceEEEeccccCCCceEEEEcc
Confidence 555666655332 2235799999855 3555544
No 42
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=1.2e-19 Score=190.96 Aligned_cols=164 Identities=32% Similarity=0.449 Sum_probs=121.9
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+..++|+++|+.++|||||+.+|.+. .++....|+.+|+|+......+..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~----------------------------~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGV----------------------------WTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCe----------------------------ecccCHhHHhcCcEEEeccccccc
Confidence 4456799999999999999999999631 245566777788888765432221
Q ss_pred C--------------------------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHH
Q 012085 342 K--------------------------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 342 ~--------------------------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (471)
. ...++|||||||++|...+..++..+|++|+|+|+..+. ...++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~-------~~~~t~~ 129 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPC-------PQPQTKE 129 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------CChhHHH
Confidence 0 257999999999999999999999999999999999762 1356677
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
++.++...+.+++|+|+||+|+... +......+.+..+++... ...++++++||++|+||.+++.
T Consensus 130 ~l~~l~~~~i~~iiVVlNK~Dl~~~--~~~~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g~gI~~L~~ 194 (411)
T PRK04000 130 HLMALDIIGIKNIVIVQNKIDLVSK--ERALENYEQIKEFVKGTV--AENAPIIPVSALHKVNIDALIE 194 (411)
T ss_pred HHHHHHHcCCCcEEEEEEeeccccc--hhHHHHHHHHHHHhcccc--CCCCeEEEEECCCCcCHHHHHH
Confidence 7778888887779999999999843 222333344555543321 2346899999999999977653
No 43
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.81 E-value=3.2e-19 Score=171.04 Aligned_cols=172 Identities=23% Similarity=0.297 Sum_probs=126.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-----C
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-----S 341 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-----~ 341 (471)
++|+|+|++|+|||||+++|++..+.+... ++......+.++....++..|+++......+. .
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 369999999999999999999766554321 12223334566777788888888765555442 3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ-- 419 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~-- 419 (471)
....++|||||||.+|...+..++..+|++|+|+|+..+. ..+..+++..+...+.| +++|+||+|++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~--------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~ 139 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV--------TSNTERLIRHAILEGLP-IVLVINKIDRLILE 139 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECcccCccc
Confidence 4578999999999999999999999999999999998762 23445555666556666 999999999862
Q ss_pred ------CChhhHHHHHHHHHHHHHhcCCCC------CCccEEEEecccCCCc
Q 012085 420 ------YSKDRFDSIKVQLGTFLRSCGFKD------ASLTWIPLSALENQNL 459 (471)
Q Consensus 420 ------~~~e~~eei~~~L~~~l~~~g~~~------~~i~IIpvSAktG~gI 459 (471)
...+.+.++.+.+..++..+++.+ .+..+++.||+.|.++
T Consensus 140 ~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~ 191 (213)
T cd04167 140 LKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCF 191 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEE
Confidence 112456777788888887776532 2334677888888776
No 44
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.9e-19 Score=176.79 Aligned_cols=171 Identities=35% Similarity=0.538 Sum_probs=147.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+...||+.+|+.++|||||..+|+....... ...+..-...+..++++.+|+|+...+..++.
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~---------------~~~~~~y~~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKG---------------GAEAKAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhc---------------cccccchhhhccCchHhhcCceeccceeEEec
Confidence 445678999999999999999999985332111 11111122356688999999999999999999
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.++-.+|+|||.+|.++|+.+..+.|++|||+.+..+ -.+|+++|+-+.++.++|.+++++||+|++. +
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d 143 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVD-D 143 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccC-c
Confidence 999999999999999999999999999999999999988 4689999999999999999999999999995 4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG 456 (471)
.+.++.+...++.+|..++|....++|+--||+..
T Consensus 144 ~ellelVemEvreLLs~y~f~gd~~Pii~gSal~a 178 (394)
T COG0050 144 EELLELVEMEVRELLSEYGFPGDDTPIIRGSALKA 178 (394)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhh
Confidence 67888899999999999999888899999888753
No 45
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.81 E-value=3.2e-19 Score=194.75 Aligned_cols=156 Identities=27% Similarity=0.385 Sum_probs=116.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++++|||||+++|.+.... ....+|+|.+.....+.+.+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-------------------------------~~e~~GIT~~ig~~~v~~~~ 133 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-------------------------------QGEAGGITQHIGAYHVENED 133 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-------------------------------cccCCceeecceEEEEEECC
Confidence 46678999999999999999999842110 11124566666555555544
Q ss_pred e-EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 344 Y-HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~-~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
. .++|||||||+.|...+.+++..+|++|||+|+..+ ...++.+++..+...++| +||++||+|+.+...
T Consensus 134 ~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~ 204 (587)
T TIGR00487 134 GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEANP 204 (587)
T ss_pred CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCCH
Confidence 4 899999999999999999999999999999999977 467888888888888888 999999999975433
Q ss_pred hhHHHHHHHHHH---HHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGT---FLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~---~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+ .+...+.. ....++ ..++++|+||++|+||.+++..
T Consensus 205 e---~v~~~L~~~g~~~~~~~---~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 205 D---RVKQELSEYGLVPEDWG---GDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred H---HHHHHHHHhhhhHHhcC---CCceEEEEECCCCCChHHHHHh
Confidence 2 22333322 111121 2357999999999999987643
No 46
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=6.2e-19 Score=192.91 Aligned_cols=170 Identities=28% Similarity=0.364 Sum_probs=136.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++++|||||+++|++..+.+...... -.+.+|....+++.|+|+......+.+.+.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~---------------~~~v~D~~~~E~erGiTi~~~~~~i~~~~~ 68 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAET---------------QERVMDSNDLEKERGITILAKNTAIKWNDY 68 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccccc---------------ceeeeccccccccCceEEEEEEEEEecCCE
Confidence 46789999999999999999999765554332100 025788899999999999999999999999
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.++|||||||.+|...+..+++.+|++|||+|+..+ ...+++.++..+...++| +|||+||+|+... +
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip-~IVviNKiD~~~a---~ 136 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLK-PIVVINKVDRPGA---R 136 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCC-EEEEEECcCCCCC---c
Confidence 999999999999999999999999999999999977 456888888888889998 7899999999753 3
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCccEEEEecccCCCccc
Q 012085 425 FDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVT 461 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~--~~i~IIpvSAktG~gI~e 461 (471)
++.+.+.+..++..++... ..++|+++||++|.|..+
T Consensus 137 ~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~ 175 (607)
T PRK10218 137 PDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLD 175 (607)
T ss_pred hhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCC
Confidence 3445555555554443322 347899999999986443
No 47
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=2.1e-19 Score=196.73 Aligned_cols=167 Identities=28% Similarity=0.427 Sum_probs=125.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC---
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 341 (471)
..+||+|+|++++|||||+++|++..+.+..+.. -.+.++....|+++|+|+......+.+
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREM----------------REQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccc----------------cccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 4679999999999999999999987665543211 135677778899999999876665543
Q ss_pred --CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 342 --~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
..+.++|||||||.+|...+..+++.+|++|||+|++.+ ...++.+++..+...++| +|+|+||+|+..
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~ 136 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPS 136 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCc
Confidence 347899999999999999999999999999999999987 334555555555566777 999999999974
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .+.+.+.+... +++. ...++++||++|.||.+++.
T Consensus 137 ~~---~~~~~~el~~~---lg~~--~~~vi~vSAktG~GI~~Lle 173 (595)
T TIGR01393 137 AD---PERVKKEIEEV---IGLD--ASEAILASAKTGIGIEEILE 173 (595)
T ss_pred cC---HHHHHHHHHHH---hCCC--cceEEEeeccCCCCHHHHHH
Confidence 32 22333344433 2332 12579999999999987654
No 48
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=4.9e-20 Score=169.20 Aligned_cols=145 Identities=23% Similarity=0.262 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+++|.||+|||||+|+|+|....+.. .+|+|++.....+...+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n-------------------------------~pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGN-------------------------------WPGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEE-------------------------------STTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecC-------------------------------CCCCCeeeeeEEEEecCceE
Confidence 47999999999999999999986543322 37888888888888888999
Q ss_pred EEEeCCCCCCchh------hhhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 347 VVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 347 ~LIDTPG~e~f~~------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.|+|+||.-.+.. ....++ ..+|++|+|+|+++. .....+...+.++++| +|+|+||+|+.
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l----------~r~l~l~~ql~e~g~P-~vvvlN~~D~a 118 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL----------ERNLYLTLQLLELGIP-VVVVLNKMDEA 118 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH----------HHHHHHHHHHHHTTSS-EEEEEETHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH----------HHHHHHHHHHHHcCCC-EEEEEeCHHHH
Confidence 9999999433211 112232 579999999999943 3445666777888988 99999999987
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
...... .-.+.|.+.+ | ++++|+||++|+|+.++.
T Consensus 119 ~~~g~~--id~~~Ls~~L---g-----~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 119 ERKGIE--IDAEKLSERL---G-----VPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HHTTEE--E-HHHHHHHH---T-----S-EEEEBTTTTBTHHHHH
T ss_pred HHcCCE--ECHHHHHHHh---C-----CCEEEEEeCCCcCHHHHH
Confidence 422111 1133444443 3 589999999999998864
No 49
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=4.6e-19 Score=160.23 Aligned_cols=154 Identities=19% Similarity=0.174 Sum_probs=100.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+||+|+|.+|+|||||+++|++..... ...+..+... .....+......
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~ 51 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVT-----------------------------DYDPTIEDSY-TKQCEIDGQWAI 51 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------------ccCCCccceE-EEEEEECCEEEE
Confidence 4689999999999999999998532100 0000011111 111223334467
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~ 422 (471)
+.||||||++++...+..+++.+|++|+|+|++...+ +.....+...+.+. .+.| +|||+||+|+.....
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~ 124 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS------FEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRK 124 (164)
T ss_pred EEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccce
Confidence 8999999999999998899999999999999996522 22233333333322 3445 999999999964321
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. .+....+++..+ ++++++||++|.||.+++..
T Consensus 125 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~ 158 (164)
T cd04145 125 VS----REEGQELARKLK-----IPYIETSAKDRLNVDKAFHD 158 (164)
T ss_pred ec----HHHHHHHHHHcC-----CcEEEeeCCCCCCHHHHHHH
Confidence 11 122333444333 47899999999999998754
No 50
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.80 E-value=2e-19 Score=197.03 Aligned_cols=168 Identities=29% Similarity=0.438 Sum_probs=128.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC--
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (471)
.+.+||+|+|+.++|||||+.+|+...+.+..... -.++++....|+++|+|+......+.+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 45679999999999999999999987666544311 136778888999999999766655543
Q ss_pred ---CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ---~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
..+.++|||||||.+|...+..++..+|++|||||++.+ .+.++.+++.++...++| +|+|+||+|+.
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~ 139 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLP 139 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence 367899999999999999999999999999999999987 345666666666667887 99999999996
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... .+.+.+.+... +++. ...++++||++|.||.+++.
T Consensus 140 ~a~---~~~v~~ei~~~---lg~~--~~~vi~iSAktG~GI~~Ll~ 177 (600)
T PRK05433 140 AAD---PERVKQEIEDV---IGID--ASDAVLVSAKTGIGIEEVLE 177 (600)
T ss_pred ccc---HHHHHHHHHHH---hCCC--cceEEEEecCCCCCHHHHHH
Confidence 432 23333444433 2332 13589999999999987643
No 51
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.80 E-value=2.7e-19 Score=164.93 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=101.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|++|+|||||+++|++.... ...++.|..+ ..+....
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~------------------------------~~~~t~g~~~----~~~~~~~ 57 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID------------------------------TISPTLGFQI----KTLEYEG 57 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC------------------------------CcCCccccce----EEEEECC
Confidence 34578999999999999999999853110 0011122111 1122346
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|||+|++.... +.....++..++. ..+.| ++||+||+|+...
T Consensus 58 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 130 (173)
T cd04154 58 YKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR------LDDCKRELKELLQEERLAGAT-LLILANKQDLPGA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH------HHHHHHHHHHHHhChhhcCCC-EEEEEECcccccC
Confidence 789999999999988888889999999999999996521 2222233333332 23444 9999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. ..+ .+...+.........++++++||++|+||.+++.
T Consensus 131 ~--~~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 131 L--SEE----EIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred C--CHH----HHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 1 222 2333332222233457899999999999998764
No 52
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=8.3e-19 Score=159.85 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=101.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..+||+|+|.+|+|||||+++|++.... .......+.........+.....
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 52 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFS-----------------------------ERQGNTIGVDFTMKTLEIEGKRV 52 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCc-----------------------------ccCCCccceEEEEEEEEECCEEE
Confidence 3578999999999999999999842100 00111222222222233333336
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.++||||||++.|...+...++.+|++|+|+|++.+.+ +... ..++..+.. .++| +|+|+||+|+....
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s------~~~~-~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~ 124 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS------FESV-PHWIEEVEKYGASNVV-LLLIGNKCDLEEQR 124 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH------HHhH-HHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 88999999999998888889999999999999997622 2222 223333332 2344 99999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.... +....+.+..+. ..++++||++|.|+.+++..
T Consensus 125 ~~~~----~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 125 EVLF----EEACTLAEKNGM----LAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred ccCH----HHHHHHHHHcCC----cEEEEEECCCCCCHHHHHHH
Confidence 2222 223334333332 36799999999999987654
No 53
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.3e-19 Score=187.78 Aligned_cols=158 Identities=26% Similarity=0.356 Sum_probs=123.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC--
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 342 (471)
+++-|.|+||.++||||||..|-....... ...|+|..+....+...
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-------------------------------EaGGITQhIGA~~v~~~~~ 52 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-------------------------------EAGGITQHIGAYQVPLDVI 52 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc-------------------------------cCCceeeEeeeEEEEeccC
Confidence 556799999999999999999974322221 13677877777777663
Q ss_pred -CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 -~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
...++|+|||||+.|..++.++...+|++||||++.++ +++|+.|.++.++..++| |||++||||+.+.+
T Consensus 53 ~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 53 KIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG--------VMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC--------cchhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 46899999999999999999999999999999999988 789999999999999999 99999999999654
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+....-+....-....++ ..+.|+|+||++|+||.++..-
T Consensus 124 p~~v~~el~~~gl~~E~~g---g~v~~VpvSA~tg~Gi~eLL~~ 164 (509)
T COG0532 124 PDKVKQELQEYGLVPEEWG---GDVIFVPVSAKTGEGIDELLEL 164 (509)
T ss_pred HHHHHHHHHHcCCCHhhcC---CceEEEEeeccCCCCHHHHHHH
Confidence 4432221222211122222 2478999999999999987543
No 54
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=6e-19 Score=167.12 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCeE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (471)
+||+|+|.+|||||||+++|++.... .....+.+.........+. .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-----------------------------~~~~~t~~~d~~~~~v~~~~~~~~~ 51 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-----------------------------QHYKATIGVDFALKVIEWDPNTVVR 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCCCEEE
Confidence 47999999999999999999842100 0011122222222333344 45678
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH------hcCCCeEEEEEeCCCCCC
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR------SFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~------~~~vp~IIVVvNKiDl~~ 419 (471)
+.||||||++.|...+..+++.+|++|+|+|++...+ +.....+...+.. ...+| +|||+||+|+..
T Consensus 52 l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s------~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~ 124 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST------FEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKK 124 (201)
T ss_pred EEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccc
Confidence 9999999999999888899999999999999997632 2222222222211 12344 999999999963
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..... .+.+..+++..++ ..++++||++|.||.+++..
T Consensus 125 ~~~~~----~~~~~~~~~~~~~----~~~~e~Sak~~~~v~e~f~~ 162 (201)
T cd04107 125 RLAKD----GEQMDQFCKENGF----IGWFETSAKEGINIEEAMRF 162 (201)
T ss_pred ccccC----HHHHHHHHHHcCC----ceEEEEeCCCCCCHHHHHHH
Confidence 21111 2334455554442 47899999999999987643
No 55
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=1.2e-18 Score=164.80 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=104.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..+||+|+|..|||||||+.+|..... ........+.........+.....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~i~~~~~~~ 55 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-----------------------------ESPYGYNMGIDYKTTTILLDGRRV 55 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCcceeEEEEEEEEECCEEE
Confidence 458999999999999999999983100 000111122222222233444457
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+.||||||+++|...+..+++.+|++|||+|++...+ +.....|+-++.......|+|||+||+|+.......
T Consensus 56 ~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S------f~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~ 129 (189)
T cd04121 56 KLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS------FDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA 129 (189)
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC
Confidence 89999999999999988889999999999999997632 333333333332222233599999999996422211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++++.+++..+ ++|+++||++|.||.++|..
T Consensus 130 ----~~~~~~~a~~~~-----~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 130 ----TEQAQAYAERNG-----MTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred ----HHHHHHHHHHcC-----CEEEEecCCCCCCHHHHHHH
Confidence 233444444443 47899999999999998754
No 56
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=4e-19 Score=163.99 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|+..... ...++.|.++. .+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~------------------------------~~~~t~g~~~~----~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV------------------------------TTIPTVGFNVE----TVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc------------------------------cccCCcccceE----EEEECCE
Confidence 4578999999999999999999731100 00111122221 1223568
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++++...+..+++.+|++|||+|++... .+.....++.+++.. .+.| ++||+||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD------RIDEARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh------hHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 8999999999999888888999999999999999652 233344444455443 2344 9999999998642
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+ ++...+.........+.++++||++|+||.+++.
T Consensus 126 -~~~~----~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~ 163 (168)
T cd04149 126 -MKPH----EIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLT 163 (168)
T ss_pred -CCHH----HHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHH
Confidence 1122 2333322111222335789999999999998764
No 57
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=1.6e-18 Score=158.24 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..-. .....+.+..+......+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM-----------------------------ADCPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCcccceeEEEEEEEECCEEEEE
Confidence 68999999999999999999842100 0011122223322333344455688
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.|...+..+++.+|++|+|+|++...+ +... ..++..+... ...|+++|+||+|+.......
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s------~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~ 126 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST------YNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT 126 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCcC
Confidence 999999999999988899999999999999997632 2222 2223322222 123599999999997532222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. +.+..+++..+ ++++++||++|.||.++|..
T Consensus 127 ~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 127 Y----EEAKQFADENG-----LLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred H----HHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHH
Confidence 2 22333333333 47899999999999998754
No 58
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.79 E-value=9e-19 Score=158.21 Aligned_cols=155 Identities=16% Similarity=0.109 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... ......+.........+......+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~l 51 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-----------------------------KYLPTIGIDYGVKKVSVRNKEVRV 51 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceeEEEEEEEECCeEEEE
Confidence 479999999999999999998522100 111112222223333444556789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc------CCCeEEEEEeCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~vp~IIVVvNKiDl~~~ 420 (471)
.||||||++.+...+...++.+|++|+|+|+++..+ +.....++..+.+.. ...|+|+|+||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 125 (168)
T cd04119 52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS------FEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH 125 (168)
T ss_pred EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH------HHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc
Confidence 999999999998888888999999999999997622 222333333333222 22459999999999732
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.... ......+....+ ++++++||++|.||.+++..
T Consensus 126 ~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~ 161 (168)
T cd04119 126 RAVS----EDEGRLWAESKG-----FKYFETSACTGEGVNEMFQT 161 (168)
T ss_pred cccC----HHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHH
Confidence 1111 122222333333 46899999999999987653
No 59
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.79 E-value=8.1e-19 Score=157.59 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++...... ..++.+... .....+......+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~~~ 51 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------------YDPTIEDSY-RKQVVIDGETCLL 51 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCC-----------------------------cCCcchheE-EEEEEECCEEEEE
Confidence 5799999999999999999985211000 000111111 1112233344568
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||++++...+..+++.++++++|+|..... . +.....++..+.+. .+.| +|||+||+|+... ..
T Consensus 52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~-~~ 123 (162)
T cd04138 52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK---S---FEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAAR-TV 123 (162)
T ss_pred EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-ee
Confidence 89999999999999999999999999999998652 2 22333333333332 2445 9999999999742 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. ...+..+.+..+ ++++++||++|.||.+++..
T Consensus 124 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~ 156 (162)
T cd04138 124 S----SRQGQDLAKSYG-----IPYIETSAKTRQGVEEAFYT 156 (162)
T ss_pred c----HHHHHHHHHHhC-----CeEEEecCCCCCCHHHHHHH
Confidence 1 222333333333 47899999999999997643
No 60
>COG1159 Era GTPase [General function prediction only]
Probab=99.79 E-value=6.8e-19 Score=174.37 Aligned_cols=152 Identities=24% Similarity=0.281 Sum_probs=109.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.-.|+|+|.||||||||+|+|+|+...+.++..+ +...+..|+ +..++
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q----------------------TTR~~I~GI--------~t~~~ 53 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ----------------------TTRNRIRGI--------VTTDN 53 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc----------------------hhhhheeEE--------EEcCC
Confidence 455679999999999999999999988877665321 222223333 44568
Q ss_pred eEEEEEeCCCCCC--------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 344 ~~l~LIDTPG~e~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.+++|+||||... +.......+..+|+++||+|+.++ +......+++.++....| +|+++||+
T Consensus 54 ~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 54 AQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred ceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 8999999999332 445556778889999999999987 456677788888875566 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|+.... ..+..+.+.+.. .. +...++|+||++|.|+..+
T Consensus 125 D~~~~~-~~l~~~~~~~~~---~~----~f~~ivpiSA~~g~n~~~L 163 (298)
T COG1159 125 DKVKPK-TVLLKLIAFLKK---LL----PFKEIVPISALKGDNVDTL 163 (298)
T ss_pred ccCCcH-HHHHHHHHHHHh---hC----CcceEEEeeccccCCHHHH
Confidence 998542 112222222222 22 3347899999999999765
No 61
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.1e-19 Score=165.19 Aligned_cols=158 Identities=19% Similarity=0.199 Sum_probs=112.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhcccccccc--ccccceEEEEEEEEec
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAE--ERERGITMTVAVAYFD 340 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~--e~~~GiTi~~~~~~~~ 340 (471)
....+||+|+|..|||||.|+.||.. +...+ ..+-|+.+......++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~-------------------------------~~f~e~~~sTIGVDf~~rt~e~~ 54 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKD-------------------------------DTFTESYISTIGVDFKIRTVELD 54 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhcc-------------------------------CCcchhhcceeeeEEEEEEeeec
Confidence 35678999999999999999999983 11122 2245565666666677
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
.....++||||+||++|+..+.++++.|+++|+|+|.+... +|..+..+..|+-..+. .+++ .++|+||+|+...
T Consensus 55 gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~Ei~~~~~-~~v~-~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 55 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQEIDRYAS-ENVP-KLLVGNKCDLTEK 129 (205)
T ss_pred ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHHhhhhcc-CCCC-eEEEeeccccHhh
Confidence 77889999999999999999999999999999999999763 33333333333322222 2345 7999999999753
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCcc-EEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLT-WIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~-IIpvSAktG~gI~e~~~~ 465 (471)
..-.. ++.+.+...++. + |+++||+++.||.++|..
T Consensus 130 ~~v~~----~~a~~fa~~~~~-----~~f~ETSAK~~~NVe~~F~~ 166 (205)
T KOG0084|consen 130 RVVST----EEAQEFADELGI-----PIFLETSAKDSTNVEDAFLT 166 (205)
T ss_pred eecCH----HHHHHHHHhcCC-----cceeecccCCccCHHHHHHH
Confidence 22222 233445444443 4 899999999999988743
No 62
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=9.4e-19 Score=184.24 Aligned_cols=158 Identities=25% Similarity=0.273 Sum_probs=115.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+|+|++...... ...+|.|.+.....+...+
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEECC
Confidence 3468999999999999999999996432211 1235566655555555667
Q ss_pred eEEEEEeCCCCCCchh-----------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 344 YHVVVLDSPGHKDFVP-----------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~-----------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
..++||||||+.++.. ....+++.+|++|+|+|+..+ +..+...++..+...+.| +|||+
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~ 290 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVV 290 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEE
Confidence 7899999999765432 224567889999999999987 344556667777777777 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
||+|+.. ..+.++++...+...+...+ .++++++||++|.||.+++..
T Consensus 291 NK~Dl~~-~~~~~~~~~~~~~~~~~~~~----~~~vi~~SA~~g~~v~~l~~~ 338 (429)
T TIGR03594 291 NKWDLVK-DEKTREEFKKELRRKLPFLD----FAPIVFISALTGQGVDKLLDA 338 (429)
T ss_pred ECcccCC-CHHHHHHHHHHHHHhcccCC----CCceEEEeCCCCCCHHHHHHH
Confidence 9999983 34455666666665554332 368999999999999987643
No 63
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=1.4e-18 Score=157.04 Aligned_cols=157 Identities=25% Similarity=0.257 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
+++|+++|.+|+|||||+++|++....... ..++.+.......+...+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS------------------------------DIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc------------------------------CCCCCccCceeeEEEECCee
Confidence 578999999999999999999854221111 01222222222334445677
Q ss_pred EEEEeCCCCCCch-----------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 346 VVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 346 l~LIDTPG~e~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
+.+|||||+.+.. ......+..+|++|+|+|+..+.. .....++..+...+.| +++|+||
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~--------~~~~~~~~~~~~~~~~-~iiv~nK 122 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT--------EQDLRIAGLILEEGKA-LVIVVNK 122 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc--------hhHHHHHHHHHhcCCC-EEEEEec
Confidence 9999999975431 122345678999999999997732 2333445555555665 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+|+........+.+.+.+...+... ...+++++||++|.|+.+++..
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~ 169 (174)
T cd01895 123 WDLVEKDSKTMKEFKKEIRRKLPFL----DYAPIVFISALTGQGVDKLFDA 169 (174)
T ss_pred cccCCccHHHHHHHHHHHHhhcccc----cCCceEEEeccCCCCHHHHHHH
Confidence 9998543344555555555544322 2357899999999999987543
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.79 E-value=1e-18 Score=158.48 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|||||||+++|++........ ...+ ........+......+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~-----------------------------~t~~-~~~~~~~~~~~~~~~l 50 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD-----------------------------PTIE-DSYRKQIEIDGEVCLL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccC-----------------------------Cchh-hhEEEEEEECCEEEEE
Confidence 379999999999999999998532111000 0000 0001122233445678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||++++...+..+++.+|++|+|+|+....+ +.....+...+.+. ...| +|+|+||+|+......
T Consensus 51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~ 123 (164)
T smart00173 51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS------FEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVV 123 (164)
T ss_pred EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceE
Confidence 999999999999888889999999999999996522 22222322222222 2445 9999999999743211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. +.+..+.+..+ ++++++||++|.|+.+++..
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~ 156 (164)
T smart00173 124 ST----EEGKELARQWG-----CPFLETSAKERVNVDEAFYD 156 (164)
T ss_pred cH----HHHHHHHHHcC-----CEEEEeecCCCCCHHHHHHH
Confidence 11 22233333332 57899999999999988654
No 65
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.79 E-value=1.1e-18 Score=157.56 Aligned_cols=155 Identities=16% Similarity=0.126 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+++|++.... .. ...+.+. .......+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~---------------------------~~~t~~~-~~~~~~~~~~~~~~l 51 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EK---------------------------YDPTIED-SYRKQIEVDGQQCML 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cc---------------------------cCCchhh-hEEEEEEECCEEEEE
Confidence 58999999999999999999842110 00 0000000 011112233444678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
.||||||+++|...+..+++.+|++|+|+|++...+ +..+.....++.......+.| +|+|+||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~-- 125 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS-- 125 (163)
T ss_pred EEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec--
Confidence 899999999999888889999999999999986522 222222222222211112344 99999999986422111
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+....+.+.++ ++++++||++|.|+.+++.
T Consensus 126 --~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 126 --REEGQALARQWG-----CPFYETSAKSKINVDEVFA 156 (163)
T ss_pred --HHHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Confidence 112222333332 5789999999999998764
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.79 E-value=3.2e-18 Score=156.09 Aligned_cols=150 Identities=24% Similarity=0.249 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..-.. ......+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-----------------------------QQLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998421100 001112223322233344456788
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.|...+..+++.+|++|+|+|++.+.+ +... ..++..+... ..| +|+|+||+|+... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~---~ 120 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT------YKNL-SKWYEELREYRPEIP-CIVVANKIDLDPS---V 120 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhCCCCc-EEEEEECccCchh---H
Confidence 999999999999999999999999999999986622 2222 3334444333 445 9999999998521 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
......+.... .++++++||++|.|+.+++..
T Consensus 121 ----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 121 ----TQKKFNFAEKH-----NLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ----HHHHHHHHHHc-----CCeEEEEeCCCCCCHHHHHHH
Confidence 11122222222 247899999999999988654
No 67
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=3.7e-19 Score=184.81 Aligned_cols=146 Identities=25% Similarity=0.320 Sum_probs=118.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+.|+|||.||||||||+|||+++..++... .+|+|.+......++.+..|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D------------------------------~pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD------------------------------TPGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec------------------------------CCCCccCCccceeEEcCceE
Confidence 569999999999999999999876655544 48999998888888999999
Q ss_pred EEEeCCCCCC---------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 347 ~LIDTPG~e~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
.||||+|.+. ...++...+..||++|||+|+..| +...+.+++++++..++| +|+|+||+|-
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 9999999663 334456778889999999999988 567889999999976676 9999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... +.....+..+|+..+ +|+||.+|.|+.++.+
T Consensus 125 ~~~---------e~~~~efyslG~g~~----~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 125 LKA---------EELAYEFYSLGFGEP----VPISAEHGRGIGDLLD 158 (444)
T ss_pred chh---------hhhHHHHHhcCCCCc----eEeehhhccCHHHHHH
Confidence 632 222334456787654 9999999999987643
No 68
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.78 E-value=1.4e-18 Score=157.92 Aligned_cols=153 Identities=20% Similarity=0.184 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|+... .... ...+.+.... ....+......+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~---------------------------~~~t~~~~~~-~~~~~~~~~~~l 51 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEK---------------------------YDPTIEDSYR-KQVEVDGQQCML 51 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcc---------------------------cCCcchheEE-EEEEECCEEEEE
Confidence 589999999999999999998311 0000 0011111111 122233345678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||++.|...+..+++.+|++|+|+|.+...+ +.....++..+... .+.| +|||+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~ 124 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST------FNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVV 124 (164)
T ss_pred EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEE
Confidence 899999999999999999999999999999986522 22233333333332 2445 9999999999743221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..+ .+..+.+.++ ++++++||++|.||.+++..
T Consensus 125 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~ 157 (164)
T cd04175 125 GKE----QGQNLARQWG-----CAFLETSAKAKINVNEIFYD 157 (164)
T ss_pred cHH----HHHHHHHHhC-----CEEEEeeCCCCCCHHHHHHH
Confidence 111 1223333333 47899999999999987643
No 69
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.78 E-value=2.5e-18 Score=155.18 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE--EecCCCe
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YFDSKNY 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~--~~~~~~~ 344 (471)
.||+|+|++|+|||||+++|++..... ...++.+.+.... .+.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-------------------------------QYQATIGIDFLSKTMYLEDKTV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-------------------------------cCCCceeeeEEEEEEEECCEEE
Confidence 379999999999999999998532111 1112333332222 2333335
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||+..+...+...++.+|++|+|+|++.+. .+.....+...+....+ .| +++|+||+|+.....
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~ 122 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQ------SFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQ 122 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCc
Confidence 7899999999999888888999999999999998652 23333333333444443 54 999999999963222
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... +.+..+.+.. ++.++++||++|.|+.+++..
T Consensus 123 ~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l~~~ 156 (161)
T cd01861 123 VST----EEGEKKAKEL-----NAMFIETSAKAGHNVKELFRK 156 (161)
T ss_pred cCH----HHHHHHHHHh-----CCEEEEEeCCCCCCHHHHHHH
Confidence 222 2222222222 257899999999999987653
No 70
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.78 E-value=1.2e-18 Score=159.25 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=103.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++..... ......|.........+.....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-----------------------------QLFHTIGVEFLNKDLEVDGHFV 54 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------CcCCceeeEEEEEEEEECCeEE
Confidence 45889999999999999999998421100 0011122222222333445567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++++...+..+++.+|++|+|+|++...+ +..+.....++...... .++| +|||+||+|+...
T Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 129 (170)
T cd04116 55 TLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPER- 129 (170)
T ss_pred EEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HHhHHHHHHHHHHhcccccCCCCc-EEEEEECcccccc-
Confidence 78999999999999988899999999999999997632 22222222222222211 2344 9999999998632
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... .+.+.++++..++ .+++++||++|.|+.++|..
T Consensus 130 ~~~----~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 130 QVS----TEEAQAWCRENGD----YPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred ccC----HHHHHHHHHHCCC----CeEEEEECCCCCCHHHHHHH
Confidence 111 2334444444442 46899999999999988754
No 71
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=9.7e-19 Score=165.14 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=115.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+++|.++||||.|+.++... ........+.|+.+......++...
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~-----------------------------~f~~~~~sTiGIDFk~kti~l~g~~ 60 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDD-----------------------------SFNTSFISTIGIDFKIKTIELDGKK 60 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhc-----------------------------cCcCCccceEEEEEEEEEEEeCCeE
Confidence 45689999999999999999999821 1112223345666666666777778
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..++||||+||++|...+.+|++.|++++||+|.+.. .+++++.. |+..+.+. +++ +|+|+||+|+...
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne---~Sfeni~~----W~~~I~e~a~~~v~-~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE---KSFENIRN----WIKNIDEHASDDVV-KILVGNKCDLEEK 132 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch---HHHHHHHH----HHHHHHhhCCCCCc-EEEeecccccccc
Confidence 8999999999999999999999999999999999965 44444433 33333332 555 8999999999752
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. --.++-.++..++| +.|+++||++|.||.++|-
T Consensus 133 R~----V~~e~ge~lA~e~G-----~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 133 RQ----VSKERGEALAREYG-----IKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred cc----ccHHHHHHHHHHhC-----CeEEEccccCCCCHHHHHH
Confidence 21 12345555666665 5899999999999999874
No 72
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.78 E-value=3.3e-18 Score=159.14 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=101.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+|+|++..... ......|.|........+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~--- 63 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGRTQLINFFEVN--- 63 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcc-----------------------------cccCCCCcceEEEEEEeC---
Confidence 456789999999999999999999532100 011123444443333322
Q ss_pred eEEEEEeCCCCCC----------chhhhhhcc---ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEE
Q 012085 344 YHVVVLDSPGHKD----------FVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG~e~----------f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIV 410 (471)
..++||||||+.. +......++ ..++++|+|+|+..+ +.....+++.++...++| +++
T Consensus 64 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-vii 134 (179)
T TIGR03598 64 DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLI 134 (179)
T ss_pred CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 3699999999532 222222333 347899999999876 334455566777777777 999
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
|+||+|+.. ....+...+.++..+...+ ..+.+|++||++|+||+
T Consensus 135 v~nK~D~~~--~~~~~~~~~~i~~~l~~~~---~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 135 VLTKADKLK--KSELNKQLKKIKKALKKDA---DDPSVQLFSSLKKTGID 179 (179)
T ss_pred EEECcccCC--HHHHHHHHHHHHHHHhhcc---CCCceEEEECCCCCCCC
Confidence 999999973 3444556666777766543 23578999999999984
No 73
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.78 E-value=9.1e-19 Score=159.91 Aligned_cols=152 Identities=17% Similarity=0.161 Sum_probs=99.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+++|..|+|||||+++|....-. . ..++.|..+ ..+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~----------------------------~~pt~g~~~----~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--T----------------------------TIPTIGFNV----ETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c----------------------------cCCCCCcce----EEEEECCEEE
Confidence 47999999999999999999621000 0 001112211 1133457889
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++++...+..+++.+|++|||+|++... .+.....++..++.. ...+|++||+||+|+.... .
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--S 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--C
Confidence 99999999999988889999999999999998652 233334444444432 1224599999999996421 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++...+ .........+.++++||++|+||.++++
T Consensus 119 ~~~i~~~~----~~~~~~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 119 AAEVTDKL----GLHSLRNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred HHHHHHHh----CccccCCCCEEEEEeeCCCCCCHHHHHH
Confidence 12222222 1111223345788999999999999864
No 74
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=9e-19 Score=158.02 Aligned_cols=152 Identities=21% Similarity=0.180 Sum_probs=97.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|||||||+++|++..... ....++.|.++ ..+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~----------------------------~~~~~t~g~~~----~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS----------------------------QIIVPTVGFNV----ESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc----------------------------ceecCccccce----EEEEECCEEEE
Confidence 48999999999999999998421100 00111122222 12334678899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeCCCCCCCCh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNKiDl~~~~~ 422 (471)
||||||++++...+..+++.+|++|||+|++.+.. +.....++..++.. .++| ++||+||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR------LVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999999988899999999999999996521 11222222222221 2455 99999999997431
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...++. ..+.........+.|+++||++|.|+.+++.
T Consensus 121 -~~~~~~----~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~ 157 (162)
T cd04157 121 -TAVKIT----QLLGLENIKDKPWHIFASNALTGEGLDEGVQ 157 (162)
T ss_pred -CHHHHH----HHhCCccccCceEEEEEeeCCCCCchHHHHH
Confidence 112222 2221111111235689999999999999764
No 75
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.78 E-value=2.7e-18 Score=164.10 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
.|+|+|..|||||||+++|+...- ......+.|..+......+......+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-----------------------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~ 52 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-----------------------------CEACKSGVGVDFKIKTVELRGKKIRLQ 52 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-----------------------------CCcCCCcceeEEEEEEEEECCEEEEEE
Confidence 599999999999999999983110 000111222222222333444457889
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||+|+++|...+..+++.+|++|||+|+++..+ +.... .++..+... +. |+|||+||+|+.......
T Consensus 53 iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S------f~~l~-~w~~~i~~~~~~~~-piilVgNK~DL~~~~~v~ 124 (202)
T cd04120 53 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKET------FDDLP-KWMKMIDKYASEDA-ELLLVGNKLDCETDREIS 124 (202)
T ss_pred EEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhCCCCC-cEEEEEECcccccccccC
Confidence 99999999999999999999999999999997633 22222 233334332 34 499999999996422111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
......+.+.. .++.|+++||++|.||.++|.
T Consensus 125 ----~~~~~~~a~~~----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 125 ----RQQGEKFAQQI----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ----HHHHHHHHHhc----CCCEEEEecCCCCCCHHHHHH
Confidence 11222333222 124789999999999999874
No 76
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.78 E-value=3.1e-18 Score=154.72 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--CCCe
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNY 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~ 344 (471)
++|+|+|.+|+|||||+++|++..... ...+..+.........+. ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-----------------------------DYKKTIGVDFLEKQIFLRQSDEDV 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcEEEEEEEEEEEEcCCCCEE
Confidence 479999999999999999998421100 001111222211222233 3457
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e 423 (471)
.++||||||+++|...+..+++.+|++|+|+|+....+ +.....+...+.+. .++| +|+|+||+|+......
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s------~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v 124 (162)
T cd04106 52 RLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES------FEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVI 124 (162)
T ss_pred EEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCC
Confidence 89999999999999988899999999999999986522 22222332222222 2455 9999999999743221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +++..+.+..+ ++++++||++|.|+.+++.
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 156 (162)
T cd04106 125 TN----EEAEALAKRLQ-----LPLFRTSVKDDFNVTELFE 156 (162)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHH
Confidence 11 22333444444 3789999999999998764
No 77
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.5e-18 Score=161.44 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=111.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...+||+|+|..+||||||+-|+.-. .| ....+.+.|..+-.....+....
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~----------------------~F-------~e~~e~TIGaaF~tktv~~~~~~ 53 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKD----------------------QF-------HENIEPTIGAAFLTKTVTVDDNT 53 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhC----------------------cc-------ccccccccccEEEEEEEEeCCcE
Confidence 35689999999999999999999720 10 01124445555555555566667
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEE--EEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI--VAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~II--VVvNKiDl~~~~ 421 (471)
.+|.||||+|+++|.....-|++.|+++|+|+|+++.. ++.....|..++-+... |.++ +|+||+||....
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~------SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R 126 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE------SFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERR 126 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHH------HHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcc
Confidence 89999999999999999999999999999999999762 34344444444444433 5454 489999998633
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+ ++...+....| ..|+++||++|.||.++|.+
T Consensus 127 ~V~~----~ea~~yAe~~g-----ll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 127 EVEF----EEAQAYAESQG-----LLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred cccH----HHHHHHHHhcC-----CEEEEEecccccCHHHHHHH
Confidence 3333 33444554444 58999999999999988765
No 78
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=3.2e-18 Score=156.40 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... ......|................+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-----------------------------AFVSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEEE
Confidence 689999999999999999998421100 001112222222222233344679
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++++...+..+++.+|++|+|+|++... .+... .+++..+... ..+|++||+||+|+.......
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~------s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~ 125 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEE------SFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS 125 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHH------HHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccccC
Confidence 99999999999988899999999999999998652 22222 2333333332 223599999999997532211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. +...++...++ ++++++||++|.|+.+++..
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~ 157 (165)
T cd01865 126 S----ERGRQLADQLG-----FEFFEASAKENINVKQVFER 157 (165)
T ss_pred H----HHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHH
Confidence 1 22223333333 36899999999999987653
No 79
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=1.7e-18 Score=159.85 Aligned_cols=156 Identities=13% Similarity=0.138 Sum_probs=100.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec----
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---- 340 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~---- 340 (471)
..+||+|+|.+|+|||||+++|++..-. . ....+.+.........+.
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~--~---------------------------~~~~t~~~~~~~~~~~~~~~~~ 53 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFN--P---------------------------KFITTVGIDFREKRVVYNSSGP 53 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--c---------------------------cCCCccceEEEEEEEEEcCccc
Confidence 3578999999999999999999842110 0 000111111111111111
Q ss_pred ------CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEE
Q 012085 341 ------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVA 411 (471)
Q Consensus 341 ------~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVV 411 (471)
.....+.||||||++.|...+..+++.+|++|+|+|+++.. + +.....+ +..+... ..+|+++|
T Consensus 54 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~-~~~i~~~~~~~~~piiiv 126 (180)
T cd04127 54 GGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQ---S---FLNVRNW-MSQLQTHAYCENPDIVLC 126 (180)
T ss_pred cccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHH---H---HHHHHHH-HHHHHHhcCCCCCcEEEE
Confidence 23467899999999999998899999999999999998652 2 2223223 3323222 23459999
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+||+|+....... .+.+..+....+ ++++++||++|.|+.+++..
T Consensus 127 ~nK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~e~Sak~~~~v~~l~~~ 171 (180)
T cd04127 127 GNKADLEDQRQVS----EEQAKALADKYG-----IPYFETSAATGTNVEKAVER 171 (180)
T ss_pred EeCccchhcCccC----HHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 9999997432211 123344444443 47899999999999987643
No 80
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.78 E-value=3.9e-18 Score=156.13 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..+||+|+|.+|+|||||+++|++..... ......+.........+.....
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 52 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP-----------------------------SFISTIGIDFKIRTIELDGKKI 52 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCc-----------------------------ccccCccceEEEEEEEECCEEE
Confidence 35789999999999999999998421100 0011122222222223344446
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+.......++.+|++|+|+|++.+.+ +..... ++..+... +. |+|||+||+|+....
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s------~~~~~~-~~~~i~~~~~~~~-p~iiv~nK~Dl~~~~ 124 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS------FENIRN-WMRNIEEHASEDV-ERMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH------HHhHHH-HHHHHHHhCCCCC-cEEEEEECccccccc
Confidence 88999999999988888888999999999999986522 222222 33323222 34 499999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.... +.+..++...+ .+++++||++|.|+.+++..
T Consensus 125 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 125 VVSK----EEGEALADEYG-----IKFLETSAKANINVEEAFFT 159 (167)
T ss_pred CCCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 2222 22333333333 47899999999999998754
No 81
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=1.8e-18 Score=161.90 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=101.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+++|..++|||||+++|+...- . ...++.|..+ ..++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~--~----------------------------~~~pt~g~~~----~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI--V----------------------------TTIPTIGFNV----ETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC--c----------------------------cccCCcceeE----EEEEECC
Confidence 3457899999999999999999973100 0 0011122222 2244567
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|||+|++... .+.....++..++... ...|++||+||+|+....
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~------s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD------RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH------HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 88999999999999999999999999999999999652 2333333444444321 223599999999987432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++ +...+.-.......+.++++||++|+||.+++.
T Consensus 135 --~~~~----~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 135 --NAAE----ITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred --CHHH----HHHHhCccccCCCceEEEeccCCCCCCHHHHHH
Confidence 2222 222322112222334677999999999998764
No 82
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2e-18 Score=172.39 Aligned_cols=169 Identities=35% Similarity=0.569 Sum_probs=146.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+...||+-+|++++|||||.-+|+--.. ..+...+.--...|..++|+.+|+|+...+..++.
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila---------------~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT 114 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILA---------------EKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET 114 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHH---------------hccccccccHhhhhcChhhhhccceEeeeeeeeec
Confidence 455678999999999999999999983211 11222222234467889999999999999999999
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
..+++--+|+|||.+|.++|+.+..+-|++||||.+++| -.+|++||+-++++.|+++|+|.+||.|++. +
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d 185 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVD-D 185 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccC-C
Confidence 999999999999999999999999999999999999998 5689999999999999999999999999995 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk 454 (471)
.+.++.+.-+++++|.++||...++|+|.-||+
T Consensus 186 ~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 186 PEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL 218 (449)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence 567788888999999999999999999987765
No 83
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.78 E-value=4.5e-18 Score=154.97 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=100.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+||+|+|.+|+|||||+++|++..... ......+.........+......
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 52 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-----------------------------SYISTIGVDFKIRTIELDGKTIK 52 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3689999999999999999998421100 00111222222222333334567
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~~ 422 (471)
+.||||||++++......+++.+|++|+|+|+++.. .+..... ++..+... +. |+|+|+||+|+.....
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------s~~~l~~-~~~~~~~~~~~~~-~~iiv~nK~Dl~~~~~ 124 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE------SFNNVKQ-WLQEIDRYASENV-NKLLVGNKCDLTDKRV 124 (166)
T ss_pred EEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHH------HHHhHHH-HHHHHHHhCCCCC-cEEEEEEChhcccccC
Confidence 899999999999988888999999999999998652 2222222 33333322 34 4999999999864322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... +.+..+....+ ++++++||++|.||.+++..
T Consensus 125 ~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~~ 158 (166)
T cd01869 125 VDY----SEAQEFADELG-----IPFLETSAKNATNVEQAFMT 158 (166)
T ss_pred CCH----HHHHHHHHHcC-----CeEEEEECCCCcCHHHHHHH
Confidence 111 22333333333 47899999999999988643
No 84
>PTZ00369 Ras-like protein; Provisional
Probab=99.78 E-value=2.7e-18 Score=161.12 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=100.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+|+|.+|+|||||+++|++..... ....+.+.+. .....++...
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 52 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFID-----------------------------EYDPTIEDSY-RKQCVIDEET 52 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcCCchhhEE-EEEEEECCEE
Confidence 345899999999999999999998421100 0001111111 1122344455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||+++|...+..+++.+|++|+|+|++...+ +.....+...+.+. .++| +|+|+||+|+...
T Consensus 53 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s------~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~ 125 (189)
T PTZ00369 53 CLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS------FEEIASFREQILRVKDKDRVP-MILVGNKCDLDSE 125 (189)
T ss_pred EEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 678899999999999999999999999999999997632 22233322222222 2445 9999999998642
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... .....+.+.++ ++++++||++|.||.+++.
T Consensus 126 ~~i~~----~~~~~~~~~~~-----~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 126 RQVST----GEGQELAKSFG-----IPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred cccCH----HHHHHHHHHhC-----CEEEEeeCCCCCCHHHHHH
Confidence 21111 11222233333 4789999999999998764
No 85
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.77 E-value=4.9e-18 Score=155.75 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=102.9
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+||+|+|.+|+|||||+++|++..... ......|.++......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 3689999999999999999998421100 01112334443333444444568
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~~ 422 (471)
+.||||||++++......+++.+|++|+|+|++.+.+ +.... .++..++.. +. |+|||+||+|+.....
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~~-pvivv~nK~Dl~~~~~ 126 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLT-SWLEDARQHSNSNM-TIMLIGNKCDLESRRE 126 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhCCCCC-cEEEEEECcccccccC
Confidence 9999999999998888889999999999999996522 22222 233333322 34 4999999999974222
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... ++...++...+ +.++++||++|+||.+++..
T Consensus 127 ~~~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 127 VSY----EEGEAFAKEHG-----LIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred CCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 112 22333333333 47899999999999987643
No 86
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=1.1e-18 Score=193.72 Aligned_cols=157 Identities=32% Similarity=0.428 Sum_probs=114.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe--c
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D 340 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~--~ 340 (471)
..+.++|+|+|++++|||||+++|++..... ...+|+|.......+ .
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-------------------------------~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-------------------------------KEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-------------------------------ccCCccccccceEEEEEE
Confidence 3567899999999999999999998432211 111344433222222 2
Q ss_pred --CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 341 --SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 341 --~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
..+..++|||||||+.|..++..++..+|++|||||+..+ ...++.+++..+...++| +|||+||+|+.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~ 360 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKA 360 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCcc
Confidence 2458899999999999999999999999999999999977 456788888888888887 99999999997
Q ss_pred CCChhhHHHHHHHHHHH---HHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 419 QYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~---l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... .+.+...+..+ ...++ ..++|+++||++|.||.+++..
T Consensus 361 ~~~---~e~v~~eL~~~~ll~e~~g---~~vpvv~VSAktG~GIdeLle~ 404 (742)
T CHL00189 361 NAN---TERIKQQLAKYNLIPEKWG---GDTPMIPISASQGTNIDKLLET 404 (742)
T ss_pred ccC---HHHHHHHHHHhccchHhhC---CCceEEEEECCCCCCHHHHHHh
Confidence 532 23333333321 12222 2368999999999999987654
No 87
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=2.5e-18 Score=176.71 Aligned_cols=152 Identities=24% Similarity=0.316 Sum_probs=101.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+..+|+|+|.+|||||||+|+|++....+.. ...+.|.......+...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs------------------------------~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT------------------------------PKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc------------------------------CCCCCccCcEEEEEEeCC
Confidence 45679999999999999999999964332211 112233333333344567
Q ss_pred eEEEEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 344 YHVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 344 ~~l~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.+++||||||+... .......+..+|++|||+|+..+ +.....+++..++..+.| +|+|+||+
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p-~IlViNKi 170 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIV-PIFLLNKI 170 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEhh
Confidence 78999999997432 22223457889999999998865 334445666777777777 57899999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+... ... .+.+.+.... ....+||+||++|.|+.+++.
T Consensus 171 Dl~~~---~~~----~~~~~l~~~~---~~~~i~~iSAktg~gv~eL~~ 209 (339)
T PRK15494 171 DIESK---YLN----DIKAFLTENH---PDSLLFPISALSGKNIDGLLE 209 (339)
T ss_pred cCccc---cHH----HHHHHHHhcC---CCcEEEEEeccCccCHHHHHH
Confidence 98632 222 2333333222 235789999999999987653
No 88
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.77 E-value=2.4e-18 Score=156.09 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||++++++...... ...+.+ ........+......+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-----------------------------~~~t~~-~~~~~~~~~~~~~~~l 51 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK-----------------------------YDPTIE-DFYRKEIEVDSSPSVL 51 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCchh-heEEEEEEECCEEEEE
Confidence 5899999999999999999984211000 000000 0111222233444578
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||+++|...+..+++.+|++|+|+|+++..+ +.....+...+.+. .++| +++|+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~ 124 (163)
T cd04176 52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT------FQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREV 124 (163)
T ss_pred EEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCcc
Confidence 899999999999999899999999999999996522 22232222222222 3455 9999999998642211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .....+.+..+ ++++++||++|.||.+++.
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04176 125 SS----AEGRALAEEWG-----CPFMETSAKSKTMVNELFA 156 (163)
T ss_pred CH----HHHHHHHHHhC-----CEEEEecCCCCCCHHHHHH
Confidence 11 11222222222 4789999999999998764
No 89
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=1.8e-18 Score=156.71 Aligned_cols=151 Identities=23% Similarity=0.203 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|++++|||||+++|...... ...++.+..+ ..+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~------------------------------~~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV------------------------------TTIPTIGFNV----ETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc------------------------------CcCCccCcCe----EEEEECCEEEE
Confidence 5899999999999999999731100 0001111111 12334568899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||||+..|...+..++..+|++|+|+|++... .+.....++..+++. .+.| +++|+||+|+.... .
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~--~ 117 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD------RLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL--S 117 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC--C
Confidence 9999999999988889999999999999998641 122223344444432 2444 99999999997432 1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..++...+ ..........+++++||++|.||.+++..
T Consensus 118 ~~~i~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 118 EAEISEKL----GLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred HHHHHHHh----CccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 22222222 11111223357999999999999987643
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.77 E-value=5.7e-18 Score=154.29 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|++|+|||||+++|++..... ......+.........+......+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 51 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVTVDDKLVTL 51 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcCCccceEEEEEEEEECCEEEEE
Confidence 479999999999999999998521100 000111222222222233344567
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc------CCCeEEEEEeCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~vp~IIVVvNKiDl~~~ 420 (471)
.||||||++.+......+++.+|++|+|+|+..+.+ +.....+...++... ++| +++|+||+|+...
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 124 (172)
T cd01862 52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKS------FESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEK 124 (172)
T ss_pred EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccccc
Confidence 899999999999888899999999999999986622 222223322333322 344 9999999999742
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..... +.+..+++..+ .++++++||++|.|+.+++..
T Consensus 125 ~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l~~~ 161 (172)
T cd01862 125 RQVST----KKAQQWCQSNG----NIPYFETSAKEAINVEQAFET 161 (172)
T ss_pred cccCH----HHHHHHHHHcC----CceEEEEECCCCCCHHHHHHH
Confidence 21112 22333444333 257899999999999887643
No 91
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.4e-18 Score=159.38 Aligned_cols=156 Identities=18% Similarity=0.243 Sum_probs=117.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+..||+++|..+|||||||+|+++.. .......+-|+.+......++...
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~-----------------------------fd~~YqATIGiDFlskt~~l~d~~ 70 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDK-----------------------------FDNTYQATIGIDFLSKTMYLEDRT 70 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhh-----------------------------hcccccceeeeEEEEEEEEEcCcE
Confidence 345789999999999999999999521 112233345666666666777778
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC--eEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp--~IIVVvNKiDl~~~~ 421 (471)
..++||||+||++|......|++.+.++|+|+|.++. .++....+|+..+.++.+-. -|++|+||.||...
T Consensus 71 vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~------~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk- 143 (221)
T KOG0094|consen 71 VRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR------NSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK- 143 (221)
T ss_pred EEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc------chHHHHHHHHHHHHhccCCCceEEEEEcccccccch-
Confidence 8999999999999999999999999999999999965 44666778887888777652 47888999999853
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.++. .++-....++++ +.|+++||+.|.||.++|
T Consensus 144 -rqvs--~eEg~~kAkel~-----a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 144 -RQVS--IEEGERKAKELN-----AEFIETSAKAGENVKQLF 177 (221)
T ss_pred -hhhh--HHHHHHHHHHhC-----cEEEEecccCCCCHHHHH
Confidence 2221 112223334443 588999999999998765
No 92
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=3.3e-18 Score=180.61 Aligned_cols=156 Identities=24% Similarity=0.272 Sum_probs=116.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++|+|||||+|+|++....+. ...+|.|.+.....+...+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~~ 221 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERDGQ 221 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEECCe
Confidence 468999999999999999999996432221 22356677666666667788
Q ss_pred EEEEEeCCCCCCch-----------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 345 HVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 345 ~l~LIDTPG~e~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.+.||||||+.... .....+++.+|++|+|+|+..+ +..+...++.++...+.| +|||+|
T Consensus 222 ~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 222 KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEE
Confidence 89999999965421 2234577889999999999987 345666777777777777 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+|+. ..+..+++.+.+...+... ..++|+++||++|.||.+++..
T Consensus 293 K~Dl~--~~~~~~~~~~~~~~~l~~~----~~~~i~~~SA~~~~gv~~l~~~ 338 (435)
T PRK00093 293 KWDLV--DEKTMEEFKKELRRRLPFL----DYAPIVFISALTGQGVDKLLEA 338 (435)
T ss_pred CccCC--CHHHHHHHHHHHHHhcccc----cCCCEEEEeCCCCCCHHHHHHH
Confidence 99997 3344556666666555433 3468999999999999987643
No 93
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.8e-18 Score=181.24 Aligned_cols=156 Identities=28% Similarity=0.364 Sum_probs=123.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-C
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 342 (471)
.+++-|-||||+++||||||.+|.....+... ..|+|..+..+.... .
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E-------------------------------~GGITQhIGAF~V~~p~ 199 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGE-------------------------------AGGITQHIGAFTVTLPS 199 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhh-------------------------------cCCccceeceEEEecCC
Confidence 47788999999999999999999743332221 256665544443332 5
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|+|||||..|..++.++...+|++||||.+.+| ++.|+.|.+..++..++| |||++||||.++.+.
T Consensus 200 G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG--------VmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~p 270 (683)
T KOG1145|consen 200 GKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG--------VMPQTLEAIKHAKSANVP-IVVAINKIDKPGANP 270 (683)
T ss_pred CCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCH
Confidence 68999999999999999999999999999999999988 789999999999999999 999999999987765
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
+....-.....-.+.++| -++++||+||++|+||+.+
T Consensus 271 ekv~~eL~~~gi~~E~~G---GdVQvipiSAl~g~nl~~L 307 (683)
T KOG1145|consen 271 EKVKRELLSQGIVVEDLG---GDVQVIPISALTGENLDLL 307 (683)
T ss_pred HHHHHHHHHcCccHHHcC---CceeEEEeecccCCChHHH
Confidence 543322223333345555 3689999999999999865
No 94
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.77 E-value=2.9e-18 Score=158.79 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=99.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|..|+|||||+++|++.... . ...++.+.... ....+......
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~---------------------------~~~~t~~~~~~-~~~~~~~~~~~ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--D---------------------------YHDPTIEDAYK-QQARIDNEPAL 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--C---------------------------CcCCcccceEE-EEEEECCEEEE
Confidence 368999999999999999999842110 0 00001111111 11223344567
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCCCC
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~~~ 421 (471)
+.||||||+++|...+..+++.+|++|+|+|+++..+ +.... ++...+.. .++| +|||+||+|+....
T Consensus 52 l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S------f~~~~-~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~ 123 (172)
T cd04141 52 LDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS------FQEAS-EFKKLITRVRLTEDIP-LVLVGNKVDLESQR 123 (172)
T ss_pred EEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH------HHHHH-HHHHHHHHhcCCCCCC-EEEEEEChhhhhcC
Confidence 8999999999999999999999999999999997633 22222 22222222 2445 99999999986422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... .+....+.+..+ ++++++||++|.||.++|..
T Consensus 124 ~v~----~~~~~~~a~~~~-----~~~~e~Sa~~~~~v~~~f~~ 158 (172)
T cd04141 124 QVT----TEEGRNLAREFN-----CPFFETSAALRHYIDDAFHG 158 (172)
T ss_pred ccC----HHHHHHHHHHhC-----CEEEEEecCCCCCHHHHHHH
Confidence 111 112233333333 58899999999999998753
No 95
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.2e-18 Score=180.16 Aligned_cols=168 Identities=30% Similarity=0.473 Sum_probs=141.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (471)
..+.+|..|+.|.++|||||..||+..++.+..+.+. .+.+|....|+++|+|+......+.+
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~----------------~Q~LDsMdiERERGITIKaq~v~l~Yk 69 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMR----------------AQVLDSMDIERERGITIKAQAVRLNYK 69 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHH----------------HHhhhhhhhHhhcCceEEeeEEEEEEE
Confidence 3456889999999999999999999988888777654 57789999999999999766655543
Q ss_pred ----CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 342 ----KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 342 ----~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
..+.+.|||||||.+|..+..+.+..|.++|||||+++| +++|+....-++-+.+.. +|-|+|||||
T Consensus 70 ~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG--------veAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 70 AKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred eCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc--------hHHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 458899999999999999999999999999999999999 788998888888888887 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+.++.++ ++.++...+ |+... ..+.+||++|.||.+..
T Consensus 141 P~Adper---vk~eIe~~i---Gid~~--dav~~SAKtG~gI~~iL 178 (603)
T COG0481 141 PAADPER---VKQEIEDII---GIDAS--DAVLVSAKTGIGIEDVL 178 (603)
T ss_pred CCCCHHH---HHHHHHHHh---CCCcc--hheeEecccCCCHHHHH
Confidence 9776544 456666664 55433 45999999999998754
No 96
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=7.7e-18 Score=159.57 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=102.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++.... .....+.++........+.....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 55 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-----------------------------GSYITTIGVDFKIRTVEINGERV 55 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCcCccccceeEEEEEEECCEEE
Confidence 3578999999999999999999842110 00111122222222222333446
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+.||||||++.+...+..+++.++++|+|+|++... .+.....++..+.......|++||+||+|+.......
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~------s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~ 129 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGE------SFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE 129 (199)
T ss_pred EEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC
Confidence 7899999999999999999999999999999998762 2323323322222223333599999999997432111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
......+....+ +.++++||++|.||.++|..
T Consensus 130 ----~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 130 ----TEDAYKFAGQMG-----ISLFETSAKENINVEEMFNC 161 (199)
T ss_pred ----HHHHHHHHHHcC-----CEEEEEECCCCcCHHHHHHH
Confidence 122333333333 47899999999999987754
No 97
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.77 E-value=7.3e-18 Score=153.22 Aligned_cols=154 Identities=18% Similarity=0.206 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|||||||+++|++..... ...+..+.+.......+......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 53 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------DSKSTIGVEFATRSIQIDGKTIK 53 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEEEEEECCEEEE
Confidence 3689999999999999999998421100 00112222222223333344467
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cC-CCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FG-VDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~-vp~IIVVvNKiDl~~~~~e 423 (471)
+.||||||++.+......+++.++++|+|+|++...+ +..... ++..+.. .. ..|++||+||+|+......
T Consensus 54 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~-~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~ 126 (165)
T cd01868 54 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT------FENVER-WLKELRDHADSNIVIMLVGNKSDLRHLRAV 126 (165)
T ss_pred EEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH------HHHHHH-HHHHHHHhCCCCCeEEEEEECccccccccC
Confidence 8999999999988888888999999999999986522 222222 3333322 21 2359999999999743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +.+..++... .+.++++||++|.|+.+++.
T Consensus 127 ~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 127 PT----EEAKAFAEKN-----GLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred CH----HHHHHHHHHc-----CCEEEEEECCCCCCHHHHHH
Confidence 22 2233333332 24789999999999998764
No 98
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.77 E-value=1.4e-18 Score=160.48 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=112.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||+|+|++....- .. ....+-|..+-.....++...
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF----------~~-------------------qykaTIgadFltKev~Vd~~~ 57 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF----------SQ-------------------QYKATIGADFLTKEVQVDDRS 57 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH----------HH-------------------HhccccchhheeeEEEEcCeE
Confidence 4568999999999999999999984210 00 011112333333334455555
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-----CeEEEEEeCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-----DQLIVAVNKMDAV 418 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-----p~IIVVvNKiDl~ 418 (471)
..++||||+||++|.......++.+|++++|+|++.. .+++.+ ..|+-+++..... -|+||++||+|+.
T Consensus 58 vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~---~Sfe~L---~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 58 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP---KSFENL---ENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred EEEEEEecccHHHhhhcccceecCCceEEEEeecCCh---hhhccH---HHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 6789999999999999999999999999999999976 334444 4444444444332 1599999999996
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.. .+ ....+.....++..| ++++|++||+.+.||.++|..
T Consensus 132 ~~~-~r-~VS~~~Aq~WC~s~g----nipyfEtSAK~~~NV~~AFe~ 172 (210)
T KOG0394|consen 132 GGK-SR-QVSEKKAQTWCKSKG----NIPYFETSAKEATNVDEAFEE 172 (210)
T ss_pred CCc-cc-eeeHHHHHHHHHhcC----CceeEEecccccccHHHHHHH
Confidence 421 11 122345556665554 689999999999999998864
No 99
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=3.7e-18 Score=169.75 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|||||||+|+|++....+... .++.|...........+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~------------------------------~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP------------------------------KAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC------------------------------CCCcccCcEEEEEEcCCcEEE
Confidence 59999999999999999999754332221 122222222222233456799
Q ss_pred EEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 348 VLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 348 LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
||||||+... ...+..++..+|++|||+|++.... .. ..++..+...+.| +|+|+||+|+..
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~ 121 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DG-EFVLTKLQNLKRP-VVLTRNKLDNKF 121 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hH-HHHHHHHHhcCCC-EEEEEECeeCCC
Confidence 9999996542 2234567788999999999996521 11 4455666666766 999999999973
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
... +...+..+....++ ..++|+||++|.|++++.
T Consensus 122 --~~~---~~~~~~~~~~~~~~----~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 122 --KDK---LLPLIDKYAILEDF----KDIVPISALTGDNTSFLA 156 (270)
T ss_pred --HHH---HHHHHHHHHhhcCC----CceEEEecCCCCCHHHHH
Confidence 222 22333333333332 268999999999998764
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.77 E-value=2.4e-18 Score=159.67 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=100.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+++|.+|+|||||+++|.... + . ...++.|..+ ..+.....
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~----------------------~-----~---~~~~t~~~~~----~~~~~~~~ 57 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGE----------------------S-----V---TTIPTIGFNV----ETVTYKNI 57 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCC----------------------C-----C---CcCCccccce----EEEEECCE
Confidence 45789999999999999999996210 0 0 0011112211 12234568
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||+..+...+..+++.+|++|||+|++... .+.....++..++... ...|++||+||+|+....
T Consensus 58 ~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~- 130 (175)
T smart00177 58 SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD------RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM- 130 (175)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH------HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-
Confidence 8999999999999998889999999999999998652 2333334444444332 223499999999997431
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+++...+. ........+.++++||++|+||.+++.
T Consensus 131 -~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 131 -KAAEITEKLG----LHSIRDRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred -CHHHHHHHhC----ccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence 1122222221 111222345678999999999998764
No 101
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.77 E-value=5.3e-18 Score=156.80 Aligned_cols=156 Identities=13% Similarity=0.113 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+++|.+|+|||||+++|++..-. .....+.+.........+......+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l~ 52 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-----------------------------KNYKATIGVDFEMERFEILGVPFSLQ 52 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEEE
Confidence 6999999999999999999942100 00011122222222233344456899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhhH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
||||||+++|...+..+++.+|++|||+|++... .+.....++..+.+.. ..+|+|+|+||+|+..... .
T Consensus 53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--~ 124 (170)
T cd04108 53 LWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVA------SLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--Y 124 (170)
T ss_pred EEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--c
Confidence 9999999999999999999999999999998641 2333333333333332 2245899999999864311 1
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.........+...++ .+++++||++|.||.+++..
T Consensus 125 ~~~~~~~~~~~~~~~-----~~~~e~Sa~~g~~v~~lf~~ 159 (170)
T cd04108 125 ALMEQDAIKLAAEMQ-----AEYWSVSALSGENVREFFFR 159 (170)
T ss_pred cccHHHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHH
Confidence 111222333333333 47899999999999987643
No 102
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=3.3e-18 Score=158.36 Aligned_cols=152 Identities=22% Similarity=0.200 Sum_probs=100.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+++|.+|+|||||+++|++.... ...++.+.+. ..+......
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~------------------------------~~~~t~~~~~----~~~~~~~~~ 60 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV------------------------------HTSPTIGSNV----EEIVYKNIR 60 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC------------------------------CcCCccccce----EEEEECCeE
Confidence 468999999999999999999842110 0011122211 223345788
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~~ 422 (471)
+.||||||++.+...+..+++.+|++|||+|++.+. .+.....++..++... .. |++||+||+|+....
T Consensus 61 ~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~------~~~~~~~~l~~~~~~~~~~~~-p~viv~NK~Dl~~~~- 132 (174)
T cd04153 61 FLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE------RLPLTKEELYKMLAHEDLRKA-VLLVLANKQDLKGAM- 132 (174)
T ss_pred EEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCC-CEEEEEECCCCCCCC-
Confidence 999999999999888888999999999999998652 2333334444444332 34 499999999987421
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+++.+.+. ........++++++||++|+||.+++.
T Consensus 133 -~~~~i~~~l~----~~~~~~~~~~~~~~SA~~g~gi~e~~~ 169 (174)
T cd04153 133 -TPAEISESLG----LTSIRDHTWHIQGCCALTGEGLPEGLD 169 (174)
T ss_pred -CHHHHHHHhC----cccccCCceEEEecccCCCCCHHHHHH
Confidence 1222222222 111122345789999999999998764
No 103
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.77 E-value=6.8e-18 Score=152.81 Aligned_cols=153 Identities=21% Similarity=0.246 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... ......+.........+......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-----------------------------DSQHTIGVEFGSKIIRVGGKRVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCceeeeEEEEEEEECCEEEEE
Confidence 479999999999999999998422110 001112222222233344445678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||++.+.......++.+|++|+|+|++.+.+ +..... ++..+.. .+.| ++||+||+|+......
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~-~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~ 123 (161)
T cd04113 52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS------FEALPT-WLSDARALASPNIV-VILVGNKSDLADQREV 123 (161)
T ss_pred EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH------HHHHHH-HHHHHHHhCCCCCe-EEEEEEchhcchhccC
Confidence 999999999998888889999999999999997632 222222 2332222 2444 9999999999742221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. +.+..++...+ +.++++||++|.||.+++..
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~~ 156 (161)
T cd04113 124 TF----LEASRFAQENG-----LLFLETSALTGENVEEAFLK 156 (161)
T ss_pred CH----HHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHH
Confidence 12 22333433333 47899999999999988654
No 104
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.77 E-value=6.5e-18 Score=157.08 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|..|+|||||+++|++..- . ....++.+..... ...+......+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~---------------------------~~~~pt~~~~~~~-~~~~~~~~~~l 51 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--P---------------------------SEYVPTVFDNYAV-TVMIGGEPYTL 51 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--C---------------------------CCCCCceeeeeEE-EEEECCEEEEE
Confidence 6899999999999999999984210 0 0001111111111 12233344788
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChhhH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
.||||||+++|...+..+++.+|++|||+|++...+ +......++..+.. ....|+|||+||+|+.... +..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s------~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~-~~~ 124 (175)
T cd01874 52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS------FENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP-STI 124 (175)
T ss_pred EEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh-hhH
Confidence 999999999998888888999999999999997632 22232223333332 2223599999999986431 111
Q ss_pred HHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.+ .++...+.+..+ .+.|+++||++|.||.++|..
T Consensus 125 ~~l~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SA~tg~~v~~~f~~ 169 (175)
T cd01874 125 EKLAKNKQKPITPETGEKLARDLK----AVKYVECSALTQKGLKNVFDE 169 (175)
T ss_pred HHhhhccCCCcCHHHHHHHHHHhC----CcEEEEecCCCCCCHHHHHHH
Confidence 100 112222333322 257899999999999998865
No 105
>PLN03118 Rab family protein; Provisional
Probab=99.76 E-value=7.9e-18 Score=160.79 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=102.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+|+|.+|||||||+++|++.... ...+..+.........+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE------------------------------DLAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC------------------------------CcCCCceeEEEEEEEEECCEE
Confidence 34578999999999999999999842110 111223333333333444445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~ 419 (471)
..+.||||||+++|...+..+++.+|++|||+|++...+ +......+...+.. .+.| +|||+||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s------f~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET------FTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 789999999999999988999999999999999996522 22222222222222 2344 899999999974
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..... .+....+....+ +.|+++||++|.|+.+++..
T Consensus 135 ~~~i~----~~~~~~~~~~~~-----~~~~e~SAk~~~~v~~l~~~ 171 (211)
T PLN03118 135 ERDVS----REEGMALAKEHG-----CLFLECSAKTRENVEQCFEE 171 (211)
T ss_pred cCccC----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 32211 122223333333 47899999999999987643
No 106
>PRK00007 elongation factor G; Reviewed
Probab=99.76 E-value=2.5e-18 Score=191.73 Aligned_cols=171 Identities=27% Similarity=0.350 Sum_probs=136.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.+||+|+|++|+|||||+++|++..+.+.... ... ...+.+|....++.+|+|++.....+.+.+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g--------~v~-----~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~ 74 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIG--------EVH-----DGAATMDWMEQEQERGITITSAATTCFWKD 74 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccc--------ccc-----CCcccCCCCHHHHhCCCCEeccEEEEEECC
Confidence 4578999999999999999999997666543210 000 114678889999999999999888899999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|+|||||.+|...+...++.+|++|+|+|+..+ +..+++.++.++...++| +||++||||+....
T Consensus 75 ~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 75 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 578899999999999998 78999999998543
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccC-CCccccC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAP 463 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG-~gI~e~~ 463 (471)
+..+.+.++..+. +. ....++|+||..+ .|+.+.+
T Consensus 144 -~~~~~~~i~~~l~---~~-~~~~~ipisa~~~f~g~~d~~ 179 (693)
T PRK00007 144 -FYRVVEQIKDRLG---AN-PVPIQLPIGAEDDFKGVVDLV 179 (693)
T ss_pred -HHHHHHHHHHHhC---CC-eeeEEecCccCCcceEEEEcc
Confidence 4445555555542 21 2245789999888 4555554
No 107
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=7.3e-18 Score=158.47 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++...... ......+.+.......+......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 52 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG----------------------------NFIATVGIDFRNKVVTVDGVKVKL 52 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc----------------------------CcCCcccceeEEEEEEECCEEEEE
Confidence 4799999999999999999984221100 000111222222223344445789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~~e 423 (471)
+||||||++++......+++.+|++|+|+|++...+ +..... ++..+... ++ |+|||+||+|+......
T Consensus 53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s------~~~~~~-~~~~i~~~~~~~~-piiiv~NK~Dl~~~~~~ 124 (191)
T cd04112 53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS------FDNIRA-WLTEIKEYAQEDV-VIMLLGNKADMSGERVV 124 (191)
T ss_pred EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH------HHHHHH-HHHHHHHhCCCCC-cEEEEEEcccchhcccc
Confidence 999999999998888888999999999999986522 222222 33333332 34 49999999999642211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. .....+....+ ++++++||++|.|+.+++..
T Consensus 125 ~~----~~~~~l~~~~~-----~~~~e~Sa~~~~~v~~l~~~ 157 (191)
T cd04112 125 KR----EDGERLAKEYG-----VPFMETSAKTGLNVELAFTA 157 (191)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 11 22333333333 47899999999999988754
No 108
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=8.5e-18 Score=167.36 Aligned_cols=150 Identities=30% Similarity=0.428 Sum_probs=115.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|++|+|||||+++|++..+.+...... .++... -...++....++.+|+++......+++.+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~~~~-~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KARKSR-KHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------cccccC-CCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 4689999999999999999999877766543211 000001 1234677788899999999999999999999
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhH
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
+.||||||+.+|...+..+++.+|++|+|+|+..+ +..++..+++++...++| +|+++||+|+.... +
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~---~ 140 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDREGRD---P 140 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCccCCCC---H
Confidence 99999999999998888999999999999999976 345666777777777887 99999999987543 2
Q ss_pred HHHHHHHHHHH
Q 012085 426 DSIKVQLGTFL 436 (471)
Q Consensus 426 eei~~~L~~~l 436 (471)
..+.+.++..+
T Consensus 141 ~~~~~~l~~~l 151 (267)
T cd04169 141 LELLDEIEEEL 151 (267)
T ss_pred HHHHHHHHHHH
Confidence 23344555544
No 109
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.76 E-value=8.3e-18 Score=154.61 Aligned_cols=152 Identities=21% Similarity=0.186 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|||||||+++|+.... ......+.+..+.............+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~~l 51 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLDFHTNRGKIRF 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999983110 00011122222222222233455789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChhhH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
.+|||||++.+.......++.+|++|+|+|++.+.+ +.....+...+.+.. ++| +|+|+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~~~-- 122 (166)
T cd00877 52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT------YKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRKVK-- 122 (166)
T ss_pred EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCc-EEEEEEchhcccccCC--
Confidence 999999999988877788899999999999997632 222222222222222 455 9999999999732111
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.....+... ..+.++++||++|+||.++|..
T Consensus 123 ----~~~~~~~~~-----~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 123 ----AKQITFHRK-----KNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ----HHHHHHHHH-----cCCEEEEEeCCCCCChHHHHHH
Confidence 111122222 2357899999999999998753
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.76 E-value=4.2e-18 Score=153.97 Aligned_cols=152 Identities=19% Similarity=0.178 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... ...+..+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP-----------------------------DLAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-----------------------------ccCCcccceEEEEEEEECCEEEEE
Confidence 479999999999999999998421110 011223333333333344445789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCCCCh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~~~~ 422 (471)
.||||||++.+.......++.+|++|+|+|++...+ +..... ++..+.. .+.| +++|+||+|+.....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~-~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~ 123 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT------FTNLET-WLNELETYSTNNDIV-KMLVGNKIDKENREV 123 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH------HHhHHH-HHHHHHHhCCCCCCc-EEEEEECCccccccc
Confidence 999999999988888888999999999999986522 222222 2332322 2444 999999999973321
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. +....+.... .++++++||++|+|+.+.+..
T Consensus 124 -~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~~~~~ 156 (161)
T cd01863 124 -TR----EEGLKFARKH-----NMLFIETSAKTRDGVQQAFEE 156 (161)
T ss_pred -CH----HHHHHHHHHc-----CCEEEEEecCCCCCHHHHHHH
Confidence 11 2233333333 347899999999999987643
No 111
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=5.2e-18 Score=166.07 Aligned_cols=131 Identities=37% Similarity=0.531 Sum_probs=108.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++|+|||||+++|++..+.+..... ...+ .+.++....++.+|+++......+.+.+..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~-------v~~~------~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGS-------VDKG------TTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccccc-------ccCC------cccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 5899999999999999999987665543210 0011 13566677788999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
||||||+.+|...+..+++.+|++|+|+|+..+ ...++..++.++...++| +|+|+||+|+...
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a 131 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIP-TIIFVNKIDRAGA 131 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccccCC
Confidence 999999999999999999999999999999977 456778888888888888 8999999999754
No 112
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.76 E-value=1.2e-17 Score=151.04 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=101.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|++|+|||||+++|++..... ...+..+..+......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-----------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999532111 012223333333344455566789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++++...+..+++.+|++|+|+|++++. .+... ..++..+.... ..|+|||+||+|+.......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~ 125 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEE------SFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQVS 125 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHH------HHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCcCC
Confidence 99999999998888888899999999999998652 12222 23333333332 12499999999987422212
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. +.+..++...+ +.++++||++|.|+.+++.
T Consensus 126 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd01860 126 T----EEAQEYADENG-----LLFFETSAKTGENVNELFT 156 (163)
T ss_pred H----HHHHHHHHHcC-----CEEEEEECCCCCCHHHHHH
Confidence 2 22333444433 4789999999999998764
No 113
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.76 E-value=6.4e-18 Score=184.76 Aligned_cols=178 Identities=23% Similarity=0.303 Sum_probs=112.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+++.|+|+|++|+|||||+++|.+........ +..+...+. ........+...+...... .+...-
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~-------g~itq~ig~----~~~~~~~~~~~~~~~~~~~--~~~~~~ 70 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA-------GGITQHIGA----TEVPIDVIEKIAGPLKKPL--PIKLKI 70 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCC-------CceEEeece----eeccccccccccceecccc--cccccc
Confidence 456779999999999999999998542211110 000000000 0000000000001000000 000111
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC-CCC-
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYS- 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~-~~~- 421 (471)
..++|||||||+.|...+..++..+|++|||+|+..+ +..++.+++.++...++| +|+|+||+|+. .+.
T Consensus 71 ~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~ 141 (586)
T PRK04004 71 PGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKS 141 (586)
T ss_pred CCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhh
Confidence 1379999999999999999999999999999999977 456778888888888888 99999999985 221
Q ss_pred -----------------hhhHHHHHHHHHHHHHhcCCCC----------CCccEEEEecccCCCccccC
Q 012085 422 -----------------KDRFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 -----------------~e~~eei~~~L~~~l~~~g~~~----------~~i~IIpvSAktG~gI~e~~ 463 (471)
...+++....+...|...|+.. ..++|+|+||++|+|+.++.
T Consensus 142 ~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl 210 (586)
T PRK04004 142 TEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLL 210 (586)
T ss_pred hcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHH
Confidence 1223344444555666666543 35789999999999997654
No 114
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.76 E-value=8.1e-18 Score=161.43 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-CCeE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNYH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~ 345 (471)
+||+|+|.+|||||||+++|++.... ....++.+..+......+.. ....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-----------------------------~~~~~T~~~d~~~~~i~~~~~~~~~ 51 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-----------------------------KSYKQTIGLDFFSKRVTLPGNLNVT 51 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeEEEEEEEEEeCCCCEEE
Confidence 47999999999999999999842100 00011122222222223322 3578
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-----CCCeEEEEEeCCCCCCC
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~vp~IIVVvNKiDl~~~ 420 (471)
+.||||||++.+...+..+++.+|++|||+|++...+ +.... .+...+... ..+|+|+|+||+|+...
T Consensus 52 ~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s------~~~~~-~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 52 LQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS------FENLE-DWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred EEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 9999999999988888889999999999999997632 22222 233333221 12358999999999742
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.... .+.+..+.+..+ ++++++||++|+||.++|..
T Consensus 125 ~~v~----~~~~~~~~~~~~-----~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 125 RTVK----DDKHARFAQANG-----MESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred cccC----HHHHHHHHHHcC-----CEEEEEECCCCCCHHHHHHH
Confidence 2211 223334444433 46799999999999988753
No 115
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.76 E-value=1.3e-17 Score=152.34 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..-.. ...+..+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-----------------------------SYIPTIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CcCCcchheE-EEEEEECCEEEEE
Confidence 579999999999999999998421100 0000011111 1122334455678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh------cCCCeEEEEEeCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------~~vp~IIVVvNKiDl~~~ 420 (471)
.||||||+++|......+++.+|++|+|+|++...+ +.. ...++..++. .++| +|||+||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s------~~~-~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS------LEE-LKPIYELICEIKGNNIEKIP-IMLVGNKCDESHK 123 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH------HHH-HHHHHHHHHHHhcCCCCCCC-EEEEEECcccccc
Confidence 999999999998888888899999999999997632 211 2223333332 2345 9999999999642
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..... +....+.... .+.++++||++|.||.+++..
T Consensus 124 ~~v~~----~~~~~~~~~~-----~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 124 REVSS----NEGAACATEW-----NCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred CeecH----HHHHHHHHHh-----CCcEEEeecCCCCCHHHHHHH
Confidence 11111 1122222222 357899999999999998754
No 116
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.76 E-value=3.4e-18 Score=157.37 Aligned_cols=151 Identities=19% Similarity=0.134 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|.+++|||||+++|++.... ....+.|. ....++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~------------------------------~~~~T~~~----~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM------------------------------QPIPTIGF----NVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC------------------------------CcCCcCce----eEEEEEECCEEEE
Confidence 5899999999999999999842100 00011111 1122445678999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhhH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
||||||+..+...+..+++.+|++|||+|++... .+.....++..+++.. ...|++||+||+|+... ...
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD------RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHH------HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCH
Confidence 9999999999888888999999999999998652 2333444444454332 22359999999999632 112
Q ss_pred HHHHHHHHHHHHhcCC-CCCCccEEEEecccCCCccccCC
Q 012085 426 DSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 426 eei~~~L~~~l~~~g~-~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
++ +..++...+. ....+.|+++||++|.||.++|.
T Consensus 119 ~~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 119 EE----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred HH----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 22 2222221111 11235789999999999998764
No 117
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.76 E-value=1.1e-17 Score=156.77 Aligned_cols=158 Identities=12% Similarity=0.104 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... .....+.+..+......+......+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 52 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV----------------------------GPYQNTIGAAFVAKRMVVGERVVTL 52 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC----------------------------cCcccceeeEEEEEEEEECCEEEEE
Confidence 479999999999999999998421100 0011112222222233344444678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++++......+++.+|++|||+|++...+ +... ..++..+... +.| +|+|+||+|+.......
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s------~~~~-~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (193)
T cd04118 53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS------FERA-KFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSL 124 (193)
T ss_pred EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH------HHHH-HHHHHHHHhcCCCCC-EEEEEEccccccccccc
Confidence 899999999888888788889999999999986521 2222 2334444333 344 99999999986432111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.......+..+....+ ++++++||++|.||.+++..
T Consensus 125 ~~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 125 RQVDFHDVQDFADEIK-----AQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred CccCHHHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 0101123334443333 47899999999999887643
No 118
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.76 E-value=1.4e-17 Score=150.32 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++.... .......+.........+......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-----------------------------EQYKSTIGVDFKTKTIEVDGKRVKL 51 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999999843210 0011112222222223333334678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChhhH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
.||||||+..+.......++.+|++|+|+|++++.+ +.....+...+.... ...|+++|+||+|+........
T Consensus 52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s------~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~ 125 (164)
T smart00175 52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES------FENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSR 125 (164)
T ss_pred EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCH
Confidence 999999999998888889999999999999987622 222222222222222 2235999999999874221122
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+ ....+.+..+ ++++++||++|.|+.+++.
T Consensus 126 ~----~~~~~~~~~~-----~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 126 E----EAEAFAEEHG-----LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred H----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 2 2223333333 4689999999999998764
No 119
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=8.2e-18 Score=154.60 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|++|+|||||+++|++..-. .......+.........+......
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-----------------------------ERTEATIGVDFRERTVEIDGERIK 52 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CccccceeEEEEEEEEEECCeEEE
Confidence 478999999999999999999841100 001111222222223334445578
Q ss_pred EEEEeCCCCCCchh-hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCCC
Q 012085 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 346 l~LIDTPG~e~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~~ 420 (471)
+.||||||+++|.. .+..+++.+|++|+|+|++.+.+ +.... .++..+.. ..+| +|+|+||+|+...
T Consensus 53 ~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~ 124 (170)
T cd04115 53 VQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS------FHSLP-SWIEECEQHSLPNEVP-RILVGNKCDLREQ 124 (170)
T ss_pred EEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH------HHhHH-HHHHHHHHhcCCCCCC-EEEEEECccchhh
Confidence 99999999998874 46667889999999999997632 22222 23333332 2345 9999999998643
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc---CCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE---NQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt---G~gI~e~~~~ 465 (471)
.... . .....+.+.. .++++++||++ +.||.++|..
T Consensus 125 ~~~~-~---~~~~~~~~~~-----~~~~~e~Sa~~~~~~~~i~~~f~~ 163 (170)
T cd04115 125 IQVP-T---DLAQRFADAH-----SMPLFETSAKDPSENDHVEAIFMT 163 (170)
T ss_pred cCCC-H---HHHHHHHHHc-----CCcEEEEeccCCcCCCCHHHHHHH
Confidence 2111 1 1222222222 25789999999 8888887654
No 120
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.76 E-value=7.1e-18 Score=157.64 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=99.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe-cCCC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKN 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~ 343 (471)
..++|+++|.+|+|||||+++|++.... ...++.|.+........ ....
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 51 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV------------------------------NTVPTKGFNTEKIKVSLGNSKG 51 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcC------------------------------CcCCccccceeEEEeeccCCCc
Confidence 3578999999999999999999842110 00011222221111111 2356
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+..+.....++.......+.| +|||+||+|+....
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~---~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~-- 125 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVE---RMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNAL-- 125 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHH---HHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccC--
Confidence 78999999999999888888899999999999998652 1111222222333333334555 99999999986321
Q ss_pred hHHHHHHHHHHHHHhcCCC-CCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFK-DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~-~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++ +..++...... ...+.++++||++|+||.+++.
T Consensus 126 ~~~~----~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 126 SVSE----VEKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred CHHH----HHHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 1111 22222111111 1235689999999999998754
No 121
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.75 E-value=1.9e-17 Score=155.29 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+++|..|+|||||+++|++..- .....++.|..+......+......+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-----------------------------~~~~~~T~g~~~~~~~i~~~~~~~~l 51 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-----------------------------DEDYIQTLGVNFMEKTISIRGTEITF 51 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCccceEEEEEEEEECCEEEEE
Confidence 4799999999999999999984210 00111222333322233344445789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh-h
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK-D 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~-e 423 (471)
.||||+|++.|...+..+++.+|++|+|+|+++..+ +.... +++..+... ...| |+|+||+|+..... +
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s------~~~i~-~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~ 123 (182)
T cd04128 52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST------LNSIK-EWYRQARGFNKTAIP-ILVGTKYDLFADLPPE 123 (182)
T ss_pred EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhCCCCCE-EEEEEchhccccccch
Confidence 999999999999888889999999999999987632 22222 233333332 2233 67899999963211 1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..+.+.+....+.+..+ ++++++||++|.||.++|..
T Consensus 124 ~~~~~~~~~~~~a~~~~-----~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 124 EQEEITKQARKYAKAMK-----APLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred hhhhhHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 11122344444444443 47899999999999998753
No 122
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.75 E-value=6.7e-18 Score=184.30 Aligned_cols=159 Identities=26% Similarity=0.401 Sum_probs=107.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE-------
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA------- 337 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~------- 337 (471)
+.+.|+|+|++|+|||||+++|++........ .++|.+....
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~-------------------------------ggiTq~iG~~~v~~~~~ 51 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREA-------------------------------GGITQHIGATEIPMDVI 51 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccC-------------------------------CceecccCeeEeeeccc
Confidence 45679999999999999999999642211100 1111111100
Q ss_pred -----------EecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC
Q 012085 338 -----------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (471)
Q Consensus 338 -----------~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp 406 (471)
.+......++|||||||+.|...+..+++.+|++|||+|++.+ +..++.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 52 EGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP 123 (590)
T ss_pred cccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC
Confidence 0111123489999999999999999999999999999999977 456777888888888887
Q ss_pred eEEEEEeCCCCCC-CCh--------------h----hHHHHHHHHHHHHHhcCCCC----------CCccEEEEecccCC
Q 012085 407 QLIVAVNKMDAVQ-YSK--------------D----RFDSIKVQLGTFLRSCGFKD----------ASLTWIPLSALENQ 457 (471)
Q Consensus 407 ~IIVVvNKiDl~~-~~~--------------e----~~eei~~~L~~~l~~~g~~~----------~~i~IIpvSAktG~ 457 (471)
+|+|+||+|+.. +.. . .+++....+...+.+.|+.. ..++++|+||++|+
T Consensus 124 -iIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe 202 (590)
T TIGR00491 124 -FVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE 202 (590)
T ss_pred -EEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC
Confidence 999999999963 110 0 01111112222344444432 25799999999999
Q ss_pred CccccC
Q 012085 458 NLVTAP 463 (471)
Q Consensus 458 gI~e~~ 463 (471)
||.++.
T Consensus 203 GideLl 208 (590)
T TIGR00491 203 GIPELL 208 (590)
T ss_pred ChhHHH
Confidence 998864
No 123
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.75 E-value=4.9e-18 Score=153.38 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|+|||||+++|++..... ...+.+..+ ....+ .....+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~------------------------------~~~t~~~~~--~~~~~-~~~~~l~ 47 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT------------------------------TIPTVGFNV--EMLQL-EKHLSLT 47 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc------------------------------ccCccCcce--EEEEe-CCceEEE
Confidence 48999999999999999998532100 001112211 11111 2357899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||||+..+...+..++..+|++|||+|+.++. .+.....++..+++. .+.| +++|+||+|+... ..
T Consensus 48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~--~~ 118 (160)
T cd04156 48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA------RLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGA--LT 118 (160)
T ss_pred EEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccC--cC
Confidence 9999999998888888899999999999998652 123333344444432 3455 9999999999632 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+++...+. +..+. ....++++++||++|+||.+++..
T Consensus 119 ~~~i~~~~~--~~~~~-~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 119 AEEITRRFK--LKKYC-SDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred HHHHHHHcC--CcccC-CCCcEEEEecccccCCChHHHHHH
Confidence 222222221 01111 113457899999999999998754
No 124
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=1.4e-17 Score=160.69 Aligned_cols=154 Identities=22% Similarity=0.229 Sum_probs=101.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...+||+|+|..|||||||+++++.... ......+.|.++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f-----------------------------~~~~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCC-----------------------------CCccCCccceeEEEEEEEECCeE
Confidence 5678999999999999999999873110 00112223333333233334455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~ 422 (471)
..+.||||||+++|...+..+++.+|++|+|+|.+...+ +.....|+..+... .++| +|||+||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s------~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT------YKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH------HHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 789999999999999888888999999999999997632 22222232222222 2344 999999999863211
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ .+ .+... ..++++++||++|.||.++|.
T Consensus 135 -~~~----~~-~~~~~-----~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 -KAK----QV-TFHRK-----KNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred -CHH----HH-HHHHh-----cCCEEEEcCCCCCCCHHHHHH
Confidence 111 12 22222 235789999999999998874
No 125
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=8e-18 Score=157.53 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=100.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|..... . ...++.+... ..+...+.
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~--~----------------------------~~~~T~~~~~----~~~~~~~~ 61 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEV--V----------------------------TTIPTIGFNV----ETVEYKNL 61 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCc--c----------------------------ccCCccccce----EEEEECCE
Confidence 347899999999999999999962100 0 0011122221 12334678
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||++.+...+..+++.+|++|||+|+++.. .+.....++.+++.. ...+|+|||+||+|+.+..
T Consensus 62 ~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~- 134 (182)
T PTZ00133 62 KFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE------RIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM- 134 (182)
T ss_pred EEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-
Confidence 8999999999999998899999999999999998642 233333444444433 2234599999999986421
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+++...+. ...+....+.++++||++|+||.+++.
T Consensus 135 -~~~~i~~~l~----~~~~~~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 135 -STTEVTEKLG----LHSVRQRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred -CHHHHHHHhC----CCcccCCcEEEEeeeCCCCCCHHHHHH
Confidence 1122222221 112222345678999999999998764
No 126
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=6.7e-18 Score=150.81 Aligned_cols=144 Identities=26% Similarity=0.276 Sum_probs=98.6
Q ss_pred EEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEE
Q 012085 270 AIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVL 349 (471)
Q Consensus 270 aVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LI 349 (471)
+|+|.+|+|||||+++|++..... ....++.|...........+..+.||
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999999532111 11123344444444455567889999
Q ss_pred eCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 350 DSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 350 DTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
||||+..+.. .+...++.+|++|+|+|+..+. .....++..+++..+.| +++|+||+|+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~--------~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~ 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL--------TPADEEIAKYLRKSKKP-VILVVNKVDNIKEE 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC--------CccHHHHHHHHHhcCCC-EEEEEECcccCChH
Confidence 9999888543 4456678899999999998662 22334566667777766 99999999997531
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ...+...++ .+++++||++|.|+.+++..
T Consensus 122 ~~---------~~~~~~~~~----~~~~~~Sa~~~~gv~~l~~~ 152 (157)
T cd01894 122 DE---------AAEFYSLGF----GEPIPISAEHGRGIGDLLDA 152 (157)
T ss_pred HH---------HHHHHhcCC----CCeEEEecccCCCHHHHHHH
Confidence 11 122223333 25799999999999987643
No 127
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=1.3e-17 Score=152.82 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+++|.+|+|||||+++|++...... ..+..+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIES-----------------------------YDPTIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------------cCCcchheE-EEEEEECCEEEEE
Confidence 5799999999999999999984221000 000111111 1122233445688
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
.||||||+++|...+..+++.++++|+|+|++++. .+........++.......+.| +|+|+||+|+........
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~~~- 126 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA---SLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQVSR- 126 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH---HHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCccCH-
Confidence 99999999999999999999999999999999762 2222222222222222223455 999999999964322111
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+....+.+.++ .++++++||++|.|+.++|..
T Consensus 127 ---~~~~~~~~~~~----~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 127 ---EDGVSLSQQWG----NVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred ---HHHHHHHHHcC----CceEEEeeCCCCCCHHHHHHH
Confidence 12223333332 257899999999999987754
No 128
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.75 E-value=2.5e-17 Score=155.17 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|..|||||||+.+++... |. ....++.+.... ....++....
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~----------------------f~-------~~~~~t~~~~~~-~~~~~~~~~~ 51 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNA----------------------FP-------KEYIPTVFDNYS-AQTAVDGRTV 51 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCC----------------------CC-------cCCCCceEeeeE-EEEEECCEEE
Confidence 45789999999999999999998311 00 000111111111 1123444557
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH-h-cCCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-S-FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~-~~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||+++|...+..+++.+|++|+|+|+++..+ +......+...+. . .++ |+|||+||+|+.....
T Consensus 52 ~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S------f~~~~~~w~~~i~~~~~~~-piilvgNK~DL~~~~~ 124 (191)
T cd01875 52 SLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS------YENVRHKWHPEVCHHCPNV-PILLVGTKKDLRNDAD 124 (191)
T ss_pred EEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCC-CEEEEEeChhhhcChh
Confidence 89999999999999988889999999999999997632 3233222232222 2 244 4999999999964311
Q ss_pred hhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..+.+ .+....+.+..+ .++++++||++|+||.++|..
T Consensus 125 -~~~~~~~~~~~~v~~~~~~~~a~~~~----~~~~~e~SAk~g~~v~e~f~~ 171 (191)
T cd01875 125 -TLKKLKEQGQAPITPQQGGALAKQIH----AVKYLECSALNQDGVKEVFAE 171 (191)
T ss_pred -hHHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEeCCCCCCCHHHHHHH
Confidence 11111 112333333333 247899999999999998753
No 129
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.75 E-value=1.1e-17 Score=159.11 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+++|++..... ...+..+..+......+......+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~~l 51 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVYDL 51 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-----------------------------ccCCccccccceeEEEECCEEEEE
Confidence 479999999999999999998421100 000011111111122233344678
Q ss_pred EEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEe
Q 012085 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVN 413 (471)
Q Consensus 347 ~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvN 413 (471)
+||||||+..+.. .....++.+|++|||+|++.+. + +.....++..+... .++| +|||+|
T Consensus 52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~---S---~~~~~~~~~~i~~~~~~~~~~~p-iiivgN 124 (198)
T cd04142 52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPD---S---FHYVKLLRQQILETRPAGNKEPP-IVVVGN 124 (198)
T ss_pred EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcccCCCCCC-EEEEEE
Confidence 9999999765421 1334578899999999999762 2 22222222222221 2344 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+|+........ +.+..+.+.. .+++|+++||++|.||.++|..
T Consensus 125 K~Dl~~~~~~~~----~~~~~~~~~~----~~~~~~e~Sak~g~~v~~lf~~ 168 (198)
T cd04142 125 KRDQQRHRFAPR----HVLSVLVRKS----WKCGYLECSAKYNWHILLLFKE 168 (198)
T ss_pred CccccccccccH----HHHHHHHHHh----cCCcEEEecCCCCCCHHHHHHH
Confidence 999964321111 1222222211 2358899999999999998754
No 130
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=8.4e-18 Score=157.91 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|||||||+++|+....... ...+.+... .....+......+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~~l~ 50 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET-----------------------------YDPTIEDSY-RKQVVVDGQPCMLE 50 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------------CCCchHhhE-EEEEEECCEEEEEE
Confidence 489999999999999999984211000 000011111 11112333345689
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH--hcCCCeEEEEEeCCCCCCCChhhH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR--SFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~--~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
||||||+++|...+..+++.+|++|||+|++...+ +..+......+..... ..+. |+|||+||+|+........
T Consensus 51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~-piilvgNK~Dl~~~~~v~~ 126 (190)
T cd04144 51 VLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FERVERFREQIQRVKDESAADV-PIMIVGNKCDKVYEREVST 126 (190)
T ss_pred EEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhcccCCCC-CEEEEEEChhccccCccCH
Confidence 99999999999988899999999999999986632 2222112111111111 1234 4999999999964222111
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. ....+....+ ++++++||++|.||.+++..
T Consensus 127 ~----~~~~~~~~~~-----~~~~e~SAk~~~~v~~l~~~ 157 (190)
T cd04144 127 E----EGAALARRLG-----CEFIEASAKTNVNVERAFYT 157 (190)
T ss_pred H----HHHHHHHHhC-----CEEEEecCCCCCCHHHHHHH
Confidence 1 1223333333 47899999999999987653
No 131
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.75 E-value=6.5e-18 Score=152.46 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|.+|+|||||+++|++..... ...+.+.+. ..+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~------------------------------~~~t~~~~~----~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT------------------------------TIPTIGFNV----ETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC------------------------------CCCCcCcce----EEEEECCEEEE
Confidence 58999999999999999999532100 001112221 12334568899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||||++.+...+...++.+|++|+|+|++.+. .+.....++..++. ..+.| +++|+||+|+... ..
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~--~~ 117 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE------RIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGA--LS 117 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccc--cC
Confidence 9999999998888888899999999999999652 12222233333333 23444 9999999999743 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++...+... ......++++++||++|.|+.+++.
T Consensus 118 ~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 118 VSELIEKLGLE----KILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred HHHHHHhhChh----hccCCcEEEEEeeCCCCCCHHHHHH
Confidence 23333332221 1222456899999999999998764
No 132
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.75 E-value=1.3e-17 Score=150.37 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+++|.+|+|||||+++|++....... ....+... .....+......+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~-----------------------------~~~~~~~~-~~~~~~~~~~~~~ 50 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY-----------------------------EPTKADSY-RKKVVLDGEDVQL 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc-----------------------------CCcchhhE-EEEEEECCEEEEE
Confidence 47999999999999999999843211000 00000001 1112234455789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||+..+...+...++.++++++|+|+..+. . +.....+...+.+. .++| +|+|+||+|+......
T Consensus 51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~ 123 (164)
T cd04139 51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME---S---FTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQV 123 (164)
T ss_pred EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEEcccccccccc
Confidence 99999999999999999999999999999998652 1 22233333333333 4555 9999999999752111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. .....+.+.++ .+++++||++|+||.+++..
T Consensus 124 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~ 156 (164)
T cd04139 124 SS----EEAANLARQWG-----VPYVETSAKTRQNVEKAFYD 156 (164)
T ss_pred CH----HHHHHHHHHhC-----CeEEEeeCCCCCCHHHHHHH
Confidence 11 22223333333 47899999999999987654
No 133
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.75 E-value=2e-17 Score=155.41 Aligned_cols=162 Identities=17% Similarity=0.106 Sum_probs=103.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+|+|..++|||||+++|+...-. ....++.+.... ....+....
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~-----------------------------~~~~pT~~~~~~-~~~~~~~~~ 52 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFP-----------------------------ENYVPTVFENYT-ASFEIDTQR 52 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCC-----------------------------CccCCceeeeeE-EEEEECCEE
Confidence 34578999999999999999999842100 000111111111 122344455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~ 422 (471)
..+.||||+|+++|...+..+++.+|++|||+|.+...+ +......+...++.. ...|+|||+||+|+.....
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S------f~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~ 126 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET------LDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT 126 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh
Confidence 789999999999999888889999999999999997622 333322333333332 2235999999999863210
Q ss_pred h-------h-HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC-ccccCCc
Q 012085 423 D-------R-FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDD 465 (471)
Q Consensus 423 e-------~-~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g-I~e~~~~ 465 (471)
. + ..-..++..++.+..++ +.|+++||++|.| |.++|..
T Consensus 127 ~~~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~n~v~~~F~~ 174 (182)
T cd04172 127 TLVELSNHRQTPVSYDQGANMAKQIGA----ATYIECSALQSENSVRDIFHV 174 (182)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHcCC----CEEEECCcCCCCCCHHHHHHH
Confidence 0 0 00112334455555442 3789999999998 9998864
No 134
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.5e-18 Score=169.74 Aligned_cols=161 Identities=33% Similarity=0.464 Sum_probs=131.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC--
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (471)
|..+||+++||+++|||||+.+|.|- -.+.+.+|..+|+|+.+.+.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv----------------------------wT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV----------------------------WTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce----------------------------eeechhHHHhcCcEEEeccccCceEe
Confidence 56789999999999999999999852 235556666677776555432110
Q ss_pred ------------------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHH
Q 012085 342 ------------------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHA 397 (471)
Q Consensus 342 ------------------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l 397 (471)
--+.+.|+|.|||+-++..|+++...-|++||||.++.+. -+.|++||+
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl 132 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHL 132 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHH
Confidence 0157899999999999999999999999999999999874 468999999
Q ss_pred HHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 398 QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 398 ~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
-.+.-.+++++|||-||+|++ +.++..+-.+++++|++..- ..+.+|||+||..+.||+.++
T Consensus 133 ~AleIigik~iiIvQNKIDlV--~~E~AlE~y~qIk~FvkGt~--Ae~aPIIPiSA~~~~NIDal~ 194 (415)
T COG5257 133 MALEIIGIKNIIIVQNKIDLV--SRERALENYEQIKEFVKGTV--AENAPIIPISAQHKANIDALI 194 (415)
T ss_pred HHHhhhccceEEEEeccccee--cHHHHHHHHHHHHHHhcccc--cCCCceeeehhhhccCHHHHH
Confidence 999999999999999999999 56666667778888876543 357899999999999998654
No 135
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.75 E-value=2.8e-17 Score=145.75 Aligned_cols=153 Identities=18% Similarity=0.210 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+++|.+|+|||||+++|++...... ..++.+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999985322111 11123333333333344455789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~~e~ 424 (471)
.|||+||+..+.......++.+|++|+|+|+.... .+..... ++..+.... ..|+++|+||+|+.......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 124 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRE------SFENLDK-WLKELKEYAPENIPIILVGNKIDLEDQRQVS 124 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHH------HHHHHHH-HHHHHHHhCCCCCcEEEEEEccccccccccc
Confidence 99999999999888899999999999999998641 1223333 343333332 23499999999996222222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+.+..+.... ..+++++||++|.|+.+++.
T Consensus 125 ----~~~~~~~~~~~-----~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 125 ----TEEAQQFAKEN-----GLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ----HHHHHHHHHHc-----CCeEEEEecCCCCCHHHHHH
Confidence 23333444332 35789999999999998754
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.74 E-value=9.3e-18 Score=152.81 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe-EE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY-HV 346 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~-~l 346 (471)
+|+|+|.+|||||||+++|++....+.. ..+.|+......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~-------------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD-------------------------------YPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC-------------------------------CCccccCCcceEEEcCCCCeE
Confidence 5999999999999999999853221100 011122222222333444 89
Q ss_pred EEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-----CCCeEEEEEeC
Q 012085 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNK 414 (471)
Q Consensus 347 ~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~vp~IIVVvNK 414 (471)
.||||||+.+ +...+...+..+|++|+|+|++.+. ..+..+ ..+.+.+... +. |+++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~--~~~~~~----~~~~~~l~~~~~~~~~~-p~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD--DPVEDY----KTIRNELELYNPELLEK-PRIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC--CHHHHH----HHHHHHHHHhCcccccc-ccEEEEEc
Confidence 9999999642 3334455566799999999999651 111112 2222222222 34 48999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+... .... ..+..++... ...+++++||++|.|+.+++.
T Consensus 124 ~Dl~~~--~~~~---~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 124 IDLLDE--EELF---ELLKELLKEL----WGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred hhcCCc--hhhH---HHHHHHHhhC----CCCCEEEEecCCCCCHHHHHH
Confidence 999743 2211 2223333221 235789999999999998764
No 137
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.74 E-value=1.9e-17 Score=160.35 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+++|+..... ....+.+.. ..........+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~------------------------------~~~~Tig~~----~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK------------------------------DTVSTVGGA----FYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC------------------------------CCCCccceE----EEEEEeeEEEE
Confidence 47999999999999999999842110 000111111 11122345679
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh--
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK-- 422 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~-- 422 (471)
.||||||++.|......+++.+|++|+|+|++...+ +.....++..+.+.. ++ |+|||+||+|+.....
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S------f~~l~~~~~~l~~~~~~~~-piIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS------LEELEDRFLGLTDTANEDC-LFAVVGNKLDLTEEGALA 119 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCC-cEEEEEECcccccccccc
Confidence 999999999999988889999999999999997632 333333444444322 33 4999999999974100
Q ss_pred -------------hhHHHHHHHHHHHHHhcCC--------C-CCCccEEEEecccCCCccccCCc
Q 012085 423 -------------DRFDSIKVQLGTFLRSCGF--------K-DASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 -------------e~~eei~~~L~~~l~~~g~--------~-~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.......++...+.++.+. . ...++|+++||++|.||.++|..
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~ 184 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEY 184 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHH
Confidence 0001112233333333321 0 01257899999999999998754
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.74 E-value=2.3e-17 Score=150.18 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|++|+|||||+++|++.... .....+.|.......+...+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 47999999999999999999853210 01112333334434445567899
Q ss_pred EEEeCCCCCCchh--------hhhhc-cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCC
Q 012085 347 VVLDSPGHKDFVP--------NMISG-ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKM 415 (471)
Q Consensus 347 ~LIDTPG~e~f~~--------~~~~~-l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKi 415 (471)
+||||||+..... ..... ...+|++|||+|++..... . +..+ ..++..+... +.| +|+|+||+
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~-~---~~~~-~~~~~~l~~~~~~~p-vilv~NK~ 123 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGY-S---LEEQ-LSLFEEIKPLFKNKP-VIVVLNKI 123 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCccccc-c---hHHH-HHHHHHHHhhcCcCC-eEEEEEcc
Confidence 9999999743110 11111 1236899999999865211 1 1122 2333344333 445 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+... ..+.+ +..+... ..++++++||++|.||.+++.
T Consensus 124 Dl~~~--~~~~~----~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 124 DLLTF--EDLSE----IEEEEEL-----EGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred ccCch--hhHHH----HHHhhhh-----ccCceEEEEecccCCHHHHHH
Confidence 99742 22222 2222211 235789999999999998764
No 139
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=1.3e-17 Score=185.90 Aligned_cols=165 Identities=31% Similarity=0.389 Sum_probs=130.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++..+.+.... . .....+.+|....++.+|+|+......+.+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~--~-----------~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~ 74 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIG--E-----------VHDGAATMDWMEQEKERGITITSAATTVFWKG 74 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccc--c-----------ccCCccccCCCHHHHhcCCCEecceEEEEECC
Confidence 4578999999999999999999997666543210 0 01124678888899999999999999999999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++||||||+.+|...+..+++.+|++|||+|+..+ ...++..++.++...++| +|+|+||+|+....
T Consensus 75 ~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~-- 143 (689)
T TIGR00484 75 HRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVP-RIAFVNKMDKTGAN-- 143 (689)
T ss_pred eEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999977 456677888888888888 88999999998543
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~ 457 (471)
+..+.+.+...+ ++. ....++|+||..+.
T Consensus 144 -~~~~~~~i~~~l---~~~-~~~~~ipis~~~~~ 172 (689)
T TIGR00484 144 -FLRVVNQIKQRL---GAN-AVPIQLPIGAEDNF 172 (689)
T ss_pred -HHHHHHHHHHHh---CCC-ceeEEeccccCCCc
Confidence 344555555554 322 12357999998774
No 140
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=1.8e-17 Score=154.23 Aligned_cols=158 Identities=11% Similarity=0.023 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCeE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (471)
++|+|+|.+|+|||||+++|++..-. . ...+..+.... ...... .....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~---------------------------~~~~t~~~~~~-~~i~~~~~~~~~ 50 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--E---------------------------EYVPTVFENYV-TNIQGPNGKIIE 50 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--C---------------------------CCCCeeeeeeE-EEEEecCCcEEE
Confidence 47999999999999999999842110 0 00001111111 111122 33467
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e 423 (471)
+.||||||+++|......+++.+|++|+|+|++...+ +......++..+.. .++| +|+|+||+|+......
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (187)
T cd04132 51 LALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS------LDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNL 123 (187)
T ss_pred EEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccc
Confidence 8999999999998888888999999999999996532 22222223322222 2344 9999999998642210
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...........+....+. .+++++||++|.||.++|..
T Consensus 124 ~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f~~ 161 (187)
T cd04132 124 DRKVTPAQAESVAKKQGA----FAYLECSAKTMENVEEVFDT 161 (187)
T ss_pred cCCcCHHHHHHHHHHcCC----cEEEEccCCCCCCHHHHHHH
Confidence 000112233444444432 26899999999999987653
No 141
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.74 E-value=2.7e-17 Score=153.79 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+++|||+|+.+++... | ......+.+.... ....++.....+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~----------------------f-------~~~~~~Ti~~~~~-~~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK----------------------F-------PTDYIPTVFDNFS-ANVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC----------------------C-------CCCCCCcceeeeE-EEEEECCEEEEE
Confidence 579999999999999999998311 0 0001111222221 122344456789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChh--
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD-- 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e-- 423 (471)
.||||+|+++|...+..+++.+|++|||+|.++..+ +......++..++. ....|+|||+||+|+......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S------f~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~ 125 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS------YENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLA 125 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhh
Confidence 999999999999998889999999999999997633 33332223333332 222359999999999642110
Q ss_pred ----hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 ----RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ----~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
......++...+.+..+. ..|+++||++|.||.++|..
T Consensus 126 ~~~~~~~v~~~~~~~~a~~~~~----~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 126 DHPGASPITTAQGEELRKQIGA----AAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred hccCCCCCCHHHHHHHHHHcCC----CEEEECCCCcccCHHHHHHH
Confidence 000112333444444332 25899999999999998754
No 142
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=3.1e-17 Score=150.17 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|..|||||||+++|++.... .. ... .....++. ..+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~----------------------~~~----~~~~~~~~---~~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--EN----------------------VPR----VLPEITIP---ADVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cc----------------------CCC----cccceEee---eeecCCeEEE
Confidence 37999999999999999999842110 00 000 00111111 1233456789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||+..+...+...+..+|++|||+|++.+.+ +......+...++.. +. |+++|+||+|+.......
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s------~~~~~~~~~~~i~~~~~~~-pviiv~nK~Dl~~~~~~~ 122 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST------LERIRTKWLPLIRRLGVKV-PIILVGNKSDLRDGSSQA 122 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCC-CEEEEEEchhcccccchh
Confidence 999999999888777788899999999999987622 222223344444432 34 499999999997532210
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+..+...+.. ..+++++||++|.|+.++|.
T Consensus 123 --~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 123 --GLEEEMLPIMNEFRE---IETCVECSAKTLINVSEVFY 157 (166)
T ss_pred --HHHHHHHHHHHHHhc---ccEEEEeccccccCHHHHHH
Confidence 112222222222210 12689999999999998765
No 143
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.74 E-value=8.7e-18 Score=156.77 Aligned_cols=153 Identities=16% Similarity=0.080 Sum_probs=98.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|+|+|+.|+|||||+++|.+..... ...+.+.+ ...+...+.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~------------------------------~~~T~~~~----~~~i~~~~~ 63 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ------------------------------HVPTLHPT----SEELTIGNI 63 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc------------------------------cCCccCcc----eEEEEECCE
Confidence 45789999999999999999998522100 00011111 112333567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.+|||||+..+...+..+++.+|++|+|+|++... .+.....++..++.. .+.| ++||+||+|+...
T Consensus 64 ~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~------s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~- 135 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE------RFQESKEELDSLLSDEELANVP-FLILGNKIDLPGA- 135 (190)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH------HHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC-
Confidence 8999999999998888888899999999999998541 122233333333332 3345 9999999999642
Q ss_pred hhhHHHHHHHHHHHHHhcCC-----------CCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGF-----------KDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~-----------~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++. ..+..... ....+.++++||++|+|+.+++.
T Consensus 136 -~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 136 -VSEEELR----QALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred -cCHHHHH----HHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 1222333 33221111 01235789999999999999864
No 144
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.2e-18 Score=151.36 Aligned_cols=157 Identities=21% Similarity=0.267 Sum_probs=118.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|++||..|+|||.|+++++. + +......-+.|+.+.+....+..+..+
T Consensus 7 lfkivlvgnagvgktclvrrftq--g---------------------------lfppgqgatigvdfmiktvev~gekik 57 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQ--G---------------------------LFPPGQGATIGVDFMIKTVEVNGEKIK 57 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhc--c---------------------------CCCCCCCceeeeeEEEEEEEECCeEEE
Confidence 47899999999999999999982 1 122222334566667777788888999
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhH
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
++||||+|+++|+..+.++++.|+++|||+|.+.. ..|+-+..+.+|+.+++...-++ |+|+||+|+.+.
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscq---psfdclpewlreie~yan~kvlk--ilvgnk~d~~dr----- 127 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ---PSFDCLPEWLREIEQYANNKVLK--ILVGNKIDLADR----- 127 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccC---cchhhhHHHHHHHHHHhhcceEE--Eeeccccchhhh-----
Confidence 99999999999999999999999999999999955 45666667777776666554333 889999998642
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++-+++.+.+.+.. ..-|+++||+..+|++.+|-+
T Consensus 128 revp~qigeefs~~q----dmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 128 REVPQQIGEEFSEAQ----DMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred hhhhHHHHHHHHHhh----hhhhhhhcccchhhHHHHHHH
Confidence 234444444443332 246799999999999987754
No 145
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.74 E-value=4.4e-17 Score=147.70 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=97.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCeE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~ 345 (471)
++|+|+|.+|+|||||+++|.+...... .......|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~---------------------------~~~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP---------------------------KNYLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC---------------------------ccCCCceEEEEEEEEEEeCCCCEEE
Confidence 4799999999999999999983110000 0011122223222222332 34578
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e 423 (471)
+.||||||++.+...+...+..+|++|+|+|.++..+ +... ..++..+... +.| +|+|+||+|+......
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~-~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS------FENC-SRWVNKVRTASKHMP-GVLVGNKMDLADKAEV 125 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhCCCCC-EEEEEECcccccccCC
Confidence 9999999999988888889999999999999986522 2222 2333333332 344 9999999999643211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ....+....+ ++++++||++|.||.+++.
T Consensus 126 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 126 TDA----QAQAFAQANQ-----LKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred CHH----HHHHHHHHcC-----CeEEEEeCCCCCChHHHHH
Confidence 111 1112222222 4789999999999998764
No 146
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.2e-17 Score=178.63 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=105.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++..... .....|+|.+.....+...+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~------------------------------~s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV------------------------------VDDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc------------------------------ccCCCCccCCcceEEEEECCE
Confidence 45899999999999999999999643211 112345555444444555677
Q ss_pred EEEEEeCCCCCCc----------hhh-hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 345 HVVVLDSPGHKDF----------VPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 345 ~l~LIDTPG~e~f----------~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.+.||||||+.+. ... ...+++.+|++|+|+|++.+.+ .+...++..+...+.| +|||+|
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s--------~~~~~~~~~~~~~~~p-iIiV~N 330 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS--------EQDQRVLSMVIEAGRA-LVLAFN 330 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC--------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 8999999996321 111 1345688999999999998733 3334455666666776 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+|+... .....+...+...+... ..++++++||++|.||.+++..
T Consensus 331 K~Dl~~~--~~~~~~~~~i~~~l~~~----~~~~~~~~SAk~g~gv~~lf~~ 376 (472)
T PRK03003 331 KWDLVDE--DRRYYLEREIDRELAQV----PWAPRVNISAKTGRAVDKLVPA 376 (472)
T ss_pred CcccCCh--hHHHHHHHHHHHhcccC----CCCCEEEEECCCCCCHHHHHHH
Confidence 9999742 22223334444333222 2357899999999999988754
No 147
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.74 E-value=3.9e-17 Score=148.60 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++....... .............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEY------------------------------VPTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC------------------------------CCceeeeeEEEEEECCEEEEE
Confidence 47999999999999999999953210000 000001111112233445679
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC-CCeEEEEEeCCCCCCCChhhH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-vp~IIVVvNKiDl~~~~~e~~ 425 (471)
.||||||++.+.......++.+|++|+|+|++... .+.....+++..+.... ..|+++|+||+|+........
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS------SFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhh
Confidence 99999999988777777788999999999998652 23334444444443332 234999999999975321100
Q ss_pred -------HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 -------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 -------eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.........+....++ .+++++||++|+|+.+++..
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~~ 167 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIGA----IGYMECSALTQEGVKEVFEE 167 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhCC----eEEEEeecCCCCCHHHHHHH
Confidence 0012333344444432 37899999999999987643
No 148
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.73 E-value=5.5e-17 Score=148.12 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|+...-. .......+.........+......+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~l 51 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-----------------------------SSHISTIGVDFKMKTIEVDGIKVRI 51 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEE
Confidence 37999999999999999999831100 0001112222222223333334678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChhhH
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
.||||||++++...+..+++.+|++|+|+|.+...+ +.....++..+.... ...|+++|+||+|+........
T Consensus 52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------f~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~ 125 (161)
T cd04117 52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS------YQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD 125 (161)
T ss_pred EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH
Confidence 999999999998888889999999999999996522 223333222222222 1235999999999964321111
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
++...+.+..+ .+++++||++|.||.++|..
T Consensus 126 ----~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~ 156 (161)
T cd04117 126 ----EQGNKLAKEYG-----MDFFETSACTNSNIKESFTR 156 (161)
T ss_pred ----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 22222223333 47899999999999998754
No 149
>PRK12739 elongation factor G; Reviewed
Probab=99.73 E-value=1.7e-17 Score=185.15 Aligned_cols=165 Identities=29% Similarity=0.382 Sum_probs=131.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++++|||||+++|++..+.+.... ... ...+.+|....++.+|+|++.....+.+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~--------~v~-----~~~~~~D~~~~E~~rgiti~~~~~~~~~~~ 72 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIG--------EVH-----DGAATMDWMEQEQERGITITSAATTCFWKG 72 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccc--------ccc-----CCccccCCChhHhhcCCCccceeEEEEECC
Confidence 4578999999999999999999997666542210 000 114678899999999999999999999999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||.+|...+..+++.+|++|+|+|+..+ +..+++.++.++...++| +|+++||||+....
T Consensus 73 ~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 73 HRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999987 567888999999988988 78999999998542
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~ 457 (471)
+..+.+.++..+... ....++|+|+..+.
T Consensus 142 -~~~~~~~i~~~l~~~----~~~~~iPis~~~~f 170 (691)
T PRK12739 142 -FFRSVEQIKDRLGAN----AVPIQLPIGAEDDF 170 (691)
T ss_pred -HHHHHHHHHHHhCCC----ceeEEecccccccc
Confidence 445566666655321 11346799997765
No 150
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=3.2e-17 Score=157.30 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=100.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe-cCCCe
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKNY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~ 344 (471)
.+||+|+|.+|||||||+++|++...... ..+..+.........+ .....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-----------------------------~~~ti~~d~~~~~i~~~~~~~~ 52 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-----------------------------SDPTVGVDFFSRLIEIEPGVRI 52 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCceeceEEEEEEEEECCCCEE
Confidence 47899999999999999999984211000 0011122111112222 22346
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||++.+......+++.+|++|+|+|++...+ +.....++..+.... ..+++|||+||+|+.....
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S------f~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~ 126 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES------FEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ 126 (211)
T ss_pred EEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccc
Confidence 79999999999998888889999999999999997622 323333333333322 2245899999999974221
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... +....+.+.++ ++++++||++|+||.+++..
T Consensus 127 v~~----~~~~~~~~~~~-----~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 127 VTR----EEAEKLAKDLG-----MKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred cCH----HHHHHHHHHhC-----CEEEEEeCCCCCCHHHHHHH
Confidence 111 22233333333 57899999999999988753
No 151
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.73 E-value=4e-17 Score=151.58 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+.++++..- .. ....+.+.... ....+......+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~---------------------------~~~~t~~~~~~-~~~~~~~~~~~l 51 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PG---------------------------EYIPTVFDNYS-ANVMVDGKPVNL 51 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CC---------------------------cCCCcceeeeE-EEEEECCEEEEE
Confidence 6899999999999999999984110 00 00000111111 112234445778
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.|...+..+++.+|++|||+|++... .+......++..+... ++ |+|||+||+|+.... ..
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~------sf~~~~~~~~~~~~~~~~~~-piilvgnK~Dl~~~~-~~ 123 (174)
T cd01871 52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA------SFENVRAKWYPEVRHHCPNT-PIILVGTKLDLRDDK-DT 123 (174)
T ss_pred EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCC-CEEEEeeChhhccCh-hh
Confidence 99999999999888888999999999999999762 2333333333333322 34 499999999996421 11
Q ss_pred HHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+.+ .+....+.+.++ .+.|+++||++|+||.++|..
T Consensus 124 ~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~i~~~f~~ 169 (174)
T cd01871 124 IEKLKEKKLTPITYPQGLAMAKEIG----AVKYLECSALTQKGLKTVFDE 169 (174)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHcC----CcEEEEecccccCCHHHHHHH
Confidence 1111 122233333333 247899999999999998754
No 152
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.4e-17 Score=154.24 Aligned_cols=155 Identities=20% Similarity=0.186 Sum_probs=116.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+|++++|+.|||||.|+.+++... .......+.|+........++....+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr-----------------------------F~~~hd~TiGvefg~r~~~id~k~IK 56 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKR-----------------------------FQPVHDLTIGVEFGARMVTIDGKQIK 56 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccC-----------------------------ccccccceeeeeeceeEEEEcCceEE
Confidence 4789999999999999999998321 11122235667777777788888999
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e 423 (471)
++||||+||+.|...+.++++.+.++|||+|.++..+ +.....|+.++-+.. +.. |++++||+||....
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s------F~hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~rR-- 127 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES------FNHLTSWLEDARQHSNENMV-IMLIGNKSDLEARR-- 127 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh------HHHHHHHHHHHHHhcCCCcE-EEEEcchhhhhccc--
Confidence 9999999999999999999999999999999997733 333344444433332 233 78889999997532
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+--.++-+.+.++.|+ .|.++||++++||.|+|..
T Consensus 128 --~Vs~EEGeaFA~ehgL-----ifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 128 --EVSKEEGEAFAREHGL-----IFMETSAKTAENVEEAFIN 162 (216)
T ss_pred --cccHHHHHHHHHHcCc-----eeehhhhhhhhhHHHHHHH
Confidence 1224555666666664 6789999999999999865
No 153
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.73 E-value=3.9e-17 Score=149.69 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++...... ..+..+... .....+......+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~~~ 50 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-----------------------------YVPTVFDHY-AVSVTVGGKQYLL 50 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCceeeee-EEEEEECCEEEEE
Confidence 4799999999999999999984211000 000000000 1112233334568
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.|.......++.+|++|+|+|+....+ +......+...+.. .+.| +|||+||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s------~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~ 123 (174)
T cd04135 51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS------FQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTL 123 (174)
T ss_pred EEEeCCCcccccccccccCCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhH
Confidence 899999999988888888899999999999986622 22232233333333 2444 99999999986432111
Q ss_pred H--------HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 F--------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~--------eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. .-..+....+.+..++ ..|+++||++|.||.++|..
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~gi~~~f~~ 168 (174)
T cd04135 124 ARLNDMKEKPVTVEQGQKLAKEIGA----HCYVECSALTQKGLKTVFDE 168 (174)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCC----CEEEEecCCcCCCHHHHHHH
Confidence 0 0001233344444443 36899999999999998754
No 154
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.73 E-value=1.6e-17 Score=155.45 Aligned_cols=157 Identities=17% Similarity=0.083 Sum_probs=100.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|||||||+++|++...... .++.+.++ ..+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~------------------------------~~t~~~~~----~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH------------------------------QPTQHPTS----EELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc------------------------------CCccccce----EEEEECC
Confidence 3457899999999999999999985311100 01111111 1233456
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.+|||||+..+...+..++..+|++|+|+|+++.. .+.....++..++.. .+.| +++|+||+|+...
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~------~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE------RFAESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH------HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 88999999999998888889999999999999998651 122233333333332 3455 9999999998642
Q ss_pred ChhhHHHHHHHHHHHHHhc---CCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~---g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
...+++.+.+.-.-... ........++++||++|+|+.+.+
T Consensus 134 --~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 134 --ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred --CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHH
Confidence 12233333332110000 001134679999999999999864
No 155
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.73 E-value=1.7e-17 Score=152.39 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=99.4
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEE
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~L 348 (471)
|+|+|.+|||||||+++|++.... . ...++.|.. ...+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~---------------------------~~~pt~g~~----~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--E---------------------------SVVPTTGFN----SVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--c---------------------------cccccCCcc----eEEEeeCCeEEEE
Confidence 899999999999999999842110 0 000111111 1224456788999
Q ss_pred EeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 349 IDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
|||||+.+|...+..+++.+|++|||+|++... .+.....++..++.. .++| +++|+||+|+.... ...+
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~------s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~--~~~~ 119 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE------RLPLARQELHQLLQHPPDLP-LVVLANKQDLPAAR--SVQE 119 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC--CHHH
Confidence 999999999999999999999999999998652 123333344444433 3444 99999999987432 2233
Q ss_pred HHHHH--HHHHHhcCCCCCCccEEEEeccc------CCCccccCC
Q 012085 428 IKVQL--GTFLRSCGFKDASLTWIPLSALE------NQNLVTAPD 464 (471)
Q Consensus 428 i~~~L--~~~l~~~g~~~~~i~IIpvSAkt------G~gI~e~~~ 464 (471)
+...+ ..+. ....+.++++||++ ++||.++|.
T Consensus 120 i~~~~~~~~~~-----~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~ 159 (164)
T cd04162 120 IHKELELEPIA-----RGRRWILQGTSLDDDGSPSRMEAVKDLLS 159 (164)
T ss_pred HHHHhCChhhc-----CCCceEEEEeeecCCCChhHHHHHHHHHH
Confidence 33222 2221 12346889999998 999998764
No 156
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=4.9e-17 Score=152.00 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|..|||||||+++|++..-. . ...++.+.... ....+......+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~---------------------------~~~~t~~~~~~-~~~~~~~~~~~l 51 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--E---------------------------TYVPTVFENYT-ASFEIDEQRIEL 51 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--C---------------------------CcCCceEEEEE-EEEEECCEEEEE
Confidence 57999999999999999999842100 0 00011111111 122344455789
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChh--
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD-- 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e-- 423 (471)
.||||||++.|......+++.+|++|+|+|.+...+ +......+...++. ....|+|||+||+|+......
T Consensus 52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S------f~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~ 125 (178)
T cd04131 52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET------LDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLM 125 (178)
T ss_pred EEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh------HHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHH
Confidence 999999999998888889999999999999997632 33322233333333 223359999999998631100
Q ss_pred -----h-HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC-ccccCCc
Q 012085 424 -----R-FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDD 465 (471)
Q Consensus 424 -----~-~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g-I~e~~~~ 465 (471)
+ ..-..++..++.+..+. ..|+++||++|+| |.++|..
T Consensus 126 ~~~~~~~~~v~~~e~~~~a~~~~~----~~~~E~SA~~~~~~v~~~F~~ 170 (178)
T cd04131 126 ELSHQRQAPVSYEQGCAIAKQLGA----EIYLECSAFTSEKSVRDIFHV 170 (178)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCC----CEEEECccCcCCcCHHHHHHH
Confidence 0 00012334445444442 3689999999995 9998754
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=2e-17 Score=176.97 Aligned_cols=147 Identities=27% Similarity=0.322 Sum_probs=104.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+...+..
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~~~ 87 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNGRR 87 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECCcE
Confidence 3679999999999999999999532211 1224666766666666677788
Q ss_pred EEEEeCCCCCC--------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 346 VVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 346 l~LIDTPG~e~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.||||||++. +...+..++..+|++|||+|++.+.+ ....++..+++..+.| +|+|+||+|+
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s--------~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT--------ATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--------HHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 99999999763 33445567889999999999997732 2345566677766776 9999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ ... +..+++.. .+++||++|.||.+++.
T Consensus 159 ~~~~~~--------~~~-~~~~g~~~----~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 159 ERGEAD--------AAA-LWSLGLGE----PHPVSALHGRGVGDLLD 192 (472)
T ss_pred Cccchh--------hHH-HHhcCCCC----eEEEEcCCCCCcHHHHH
Confidence 642111 111 12334432 37999999999998764
No 158
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=6.5e-17 Score=151.17 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|..|||||||+++|++.... ....+..+.........+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFS-----------------------------ESTKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999999842110 0011122333333333444445678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.+...+...++.+|++|||+|++.+. .+..... ++..+... ...|+|||+||+|+.......
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~------s~~~i~~-~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQE------SFENLKF-WINEINRYARENVIKVIVANKSDLVNNKVVD 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHH------HHHHHHH-HHHHHHHhCCCCCeEEEEEECCCCcccccCC
Confidence 99999999999888889999999999999998762 2222323 33333222 123599999999987432111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. .....+....+ ++++++||++|.||.+++..
T Consensus 125 ~----~~~~~~~~~~~-----~~~~evSa~~~~~i~~~f~~ 156 (188)
T cd04125 125 S----NIAKSFCDSLN-----IPFFETSAKQSINVEEAFIL 156 (188)
T ss_pred H----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 1 11222222333 47899999999999987643
No 159
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=6.7e-17 Score=144.37 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=99.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
...+|+++|.+|+|||||+++|++........ ....+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccC------------------------------CCCceeceEEEEEEcCCe
Confidence 35689999999999999999999643221110 011122222222334567
Q ss_pred EEEEEeCCCCCCch--------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.||||||+.... ......+..+|++++|+|+..+ ......++.+.+...+.| +++|+||+|
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~D 122 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEP--------IGEGDEFILELLKKSKTP-VILVLNKID 122 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCc--------cCchHHHHHHHHHHhCCC-EEEEEEchh
Confidence 89999999975432 2344567889999999999976 223344555666666666 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+... .+...+....+... . +..+++++|++++.|+.+++.
T Consensus 123 l~~~-~~~~~~~~~~~~~~---~----~~~~~~~~s~~~~~~~~~l~~ 162 (168)
T cd04163 123 LVKD-KEDLLPLLEKLKEL---G----PFAEIFPISALKGENVDELLE 162 (168)
T ss_pred cccc-HHHHHHHHHHHHhc---c----CCCceEEEEeccCCChHHHHH
Confidence 9742 22223333333222 2 235789999999999988653
No 160
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.73 E-value=2.5e-17 Score=151.81 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||++++++..-. . .... .+.........+......+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~---------------------------~~~~-t~~~~~~~~~~~~~~~~~~ 50 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--T---------------------------EYVP-TAFDNFSVVVLVDGKPVRL 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCC-ceeeeeeEEEEECCEEEEE
Confidence 47999999999999999999742100 0 0000 0111111122333445678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChh-
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKD- 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e- 423 (471)
.||||||++.+...+..+++.+|++|+|+|+++..+ +......++..+.. .+.| +|+|+||+|+......
T Consensus 51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s------f~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 123 (173)
T cd04130 51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS------FQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVL 123 (173)
T ss_pred EEEECCCChhhccccccccCCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHH
Confidence 999999999998888888999999999999997622 33333333443433 2344 9999999998642110
Q ss_pred -------hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCcC
Q 012085 424 -------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDDG 466 (471)
Q Consensus 424 -------~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~~ 466 (471)
...-..+....+.+..+. ..|+++||++|.||.+++...
T Consensus 124 ~~~~~~~~~~v~~~~~~~~a~~~~~----~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 124 IQLARYGEKPVSQSRAKALAEKIGA----CEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred HHHhhcCCCCcCHHHHHHHHHHhCC----CeEEEEeCCCCCCHHHHHHHH
Confidence 000011223333333332 378999999999999987653
No 161
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.73 E-value=3.5e-17 Score=146.95 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++....... ....+.........+......+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH-----------------------------ESTTQASFFQKTVNIGGKRIDL 51 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc-----------------------------CCccceeEEEEEEEECCEEEEE
Confidence 47999999999999999999953211100 0011111111122233344578
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+|||||++.+...+..+++.+|++|+|+|++++.. +.....+...+.... ++ |+|+|+||+|+.......
T Consensus 52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~-piiiv~nK~D~~~~~~~~ 124 (162)
T cd04123 52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADS------FQKVKKWIKELKQMRGNNI-SLVIVGNKIDLERQRVVS 124 (162)
T ss_pred EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCC-eEEEEEECcccccccCCC
Confidence 999999999888888888899999999999987622 222222222222222 34 499999999997432211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. +.+..+.+..+ .+++++||++|.|+.+++.
T Consensus 125 ~----~~~~~~~~~~~-----~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 125 K----SEAEEYAKSVG-----AKHFETSAKTGKGIEELFL 155 (162)
T ss_pred H----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 2 22233333333 4679999999999998764
No 162
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=2.1e-17 Score=148.25 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=92.6
Q ss_pred EEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEe
Q 012085 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (471)
Q Consensus 271 VVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LID 350 (471)
|+|.+|+|||||+++|++.... ....+++|.......+...+..+.|||
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------------------------------VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-------------------------------ccCCCCcccccceEEEeeCCeEEEEEE
Confidence 5899999999999999853210 011234455444444555667899999
Q ss_pred CCCCCCchhh------hhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 351 SPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 351 TPG~e~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
|||+..+... +..++ ..+|++|+|+|+.... ....+...+...++| +|+|+||+|+....
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~- 117 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE----------RNLYLTLQLLELGLP-VVVALNMIDEAEKR- 117 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch----------hHHHHHHHHHHcCCC-EEEEEehhhhcccc-
Confidence 9998876542 33334 4899999999998541 112233344456666 99999999997432
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... ....+...++ ++++++||++|+|+.+++.
T Consensus 118 -~~~~---~~~~~~~~~~-----~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 118 -GIKI---DLDKLSELLG-----VPVVPTSARKGEGIDELKD 150 (158)
T ss_pred -cchh---hHHHHHHhhC-----CCeEEEEccCCCCHHHHHH
Confidence 1111 1222222233 4789999999999988653
No 163
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.73 E-value=4.5e-17 Score=149.27 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=98.2
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEE
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~L 348 (471)
|+|+|.+|+|||||+++|++..... ......+... .....+......+.|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~-----------------------------~~~~~~~~~~-~~~~~~~~~~~~~~i 50 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE-----------------------------DYVPTVFENY-SADVEVDGKPVELGL 50 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCcEEeee-eEEEEECCEEEEEEE
Confidence 6899999999999999998421100 0000001111 111223344467999
Q ss_pred EeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 349 IDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
|||||++.+.......++.+|++|+|+|+++.. .+......++..+.. ....|+|||+||+|+.... ...+.
T Consensus 51 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~ 123 (174)
T smart00174 51 WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA------SFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK-STLRE 123 (174)
T ss_pred EECCCCcccchhchhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh-hhhhh
Confidence 999999999888888899999999999998652 233332223333332 2223499999999997421 11111
Q ss_pred ---------HHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 428 ---------IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 428 ---------i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..+....+.+..+. ..++++||++|.||.++|..
T Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~lf~~ 166 (174)
T smart00174 124 LSKQKQEPVTYEQGEALAKRIGA----VKYLECSALTQEGVREVFEE 166 (174)
T ss_pred hhcccCCCccHHHHHHHHHHcCC----cEEEEecCCCCCCHHHHHHH
Confidence 12233344444442 36899999999999998765
No 164
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.73 E-value=1.8e-17 Score=152.51 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=97.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|||||||+++|++... . ...++.|.+ ...+...+..++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~---~---------------------------~~~~t~g~~----~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP---K---------------------------KVAPTVGFT----PTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC---c---------------------------cccCcccce----EEEEEECCEEEE
Confidence 489999999999999999984210 0 001112222 122344678899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChhh
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
||||||+..+...+..+++.+|++|||+|++... .+.....++..++.. .++| ++||+||+|+.... .
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~------s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~--~ 117 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD------RVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL--L 117 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh------HHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC--C
Confidence 9999999999999999999999999999999652 232233333333332 2444 99999999997532 1
Q ss_pred HHHHHHHH--HHHHHhcCCCCCCccEEEEecccC------CCccccC
Q 012085 425 FDSIKVQL--GTFLRSCGFKDASLTWIPLSALEN------QNLVTAP 463 (471)
Q Consensus 425 ~eei~~~L--~~~l~~~g~~~~~i~IIpvSAktG------~gI~e~~ 463 (471)
..++.+.+ ..+.+.. ...+.|+++||++| +||.+.+
T Consensus 118 ~~~i~~~~~l~~~~~~~---~~~~~~~~~Sa~~g~~~~~~~g~~~~~ 161 (167)
T cd04161 118 GADVIEYLSLEKLVNEN---KSLCHIEPCSAIEGLGKKIDPSIVEGL 161 (167)
T ss_pred HHHHHHhcCcccccCCC---CceEEEEEeEceeCCCCccccCHHHHH
Confidence 22223222 1111111 12367899999998 7888754
No 165
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.73 E-value=6.8e-17 Score=151.75 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..-.. ...++.+... .....+......+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~i~~~~~~~~l 50 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-----------------------------VYEPTVFENY-VHDIFVDGLHIEL 50 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------ccCCcceeee-EEEEEECCEEEEE
Confidence 379999999999999999998421100 0000111111 1112233344689
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChhh-
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKDR- 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e~- 424 (471)
.||||||++.|...+..+++.+|++|+|+|++...+ +......++..+.. ....|+|||+||+|+.......
T Consensus 51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s------f~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~ 124 (189)
T cd04134 51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS------LENVESKWLGEIREHCPGVKLVLVALKCDLREARNERD 124 (189)
T ss_pred EEEECCCChhccccccccccCCCEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHH
Confidence 999999999988887788899999999999997622 32222223333333 2223499999999997532111
Q ss_pred -HH------HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 -FD------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 -~e------ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ...+....+....+ .+.++++||++|.||.++|..
T Consensus 125 ~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~v~e~f~~ 168 (189)
T cd04134 125 DLQRYGKHTISYEEGLAVAKRIN----ALRYLECSAKLNRGVNEAFTE 168 (189)
T ss_pred HHhhccCCCCCHHHHHHHHHHcC----CCEEEEccCCcCCCHHHHHHH
Confidence 00 00112223333332 257899999999999998753
No 166
>PLN03110 Rab GTPase; Provisional
Probab=99.73 E-value=8.3e-17 Score=154.88 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=102.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..+||+|+|++|+|||||+++|++.... .......|.........+.....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-----------------------------~~~~~t~g~~~~~~~v~~~~~~~ 61 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-----------------------------LESKSTIGVEFATRTLQVEGKTV 61 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCceeEEEEEEEEEECCEEE
Confidence 4579999999999999999999842110 01112233333333334444557
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||+++|...+..+++.++++|||+|++...+ +... ..++..+... ++| +|||+||+|+....
T Consensus 62 ~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s------~~~~-~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~ 133 (216)
T PLN03110 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT------FDNV-QRWLRELRDHADSNIV-IMMAGNKSDLNHLR 133 (216)
T ss_pred EEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH------HHHH-HHHHHHHHHhCCCCCe-EEEEEEChhccccc
Confidence 89999999999999988889999999999999986522 2222 2333333332 444 99999999986422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
... . +....+.... .++|+++||++|.|+.+++..
T Consensus 134 ~~~-~---~~~~~l~~~~-----~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 134 SVA-E---EDGQALAEKE-----GLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred CCC-H---HHHHHHHHHc-----CCEEEEEeCCCCCCHHHHHHH
Confidence 111 1 1122222222 358999999999999987754
No 167
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=8.5e-17 Score=157.09 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=103.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|..|||||+|+++|++..- .. ...++.+..... ...+.....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F--~~---------------------------~y~pTi~~~~~~-~i~~~~~~v 61 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY--PE---------------------------TYVPTVFENYTA-GLETEEQRV 61 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC--CC---------------------------CcCCceeeeeEE-EEEECCEEE
Confidence 467999999999999999999984210 00 000111111111 123444567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.||||+|++.|......+++.+|++|||+|++...+ +......|+..+.. ....|+|||+||+|+......
T Consensus 62 ~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S------f~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~ 135 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET------VDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLST 135 (232)
T ss_pred EEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH------HHHHHHHHHHHHHHhCCCCCEEEEEECcccccccch
Confidence 89999999999999888889999999999999997632 33322223333332 222359999999998631100
Q ss_pred --------hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC-CccccCCc
Q 012085 424 --------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPDD 465 (471)
Q Consensus 424 --------~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~-gI~e~~~~ 465 (471)
......++..++.+..++ ..|+++||++|+ ||.++|..
T Consensus 136 ~~~l~~~~~~~Vs~~e~~~~a~~~~~----~~~~EtSAktg~~~V~e~F~~ 182 (232)
T cd04174 136 LMELSNQKQAPISYEQGCALAKQLGA----EVYLECSAFTSEKSIHSIFRS 182 (232)
T ss_pred hhhhccccCCcCCHHHHHHHHHHcCC----CEEEEccCCcCCcCHHHHHHH
Confidence 000112345555555553 258999999998 79998854
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=3e-17 Score=150.32 Aligned_cols=153 Identities=20% Similarity=0.217 Sum_probs=99.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|++|+|||||+++|.+..... .....|.++ ..+...+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~------------------------------~~~t~g~~~----~~i~~~~~ 58 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH------------------------------ITPTQGFNI----KTVQSDGF 58 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc------------------------------cCCCCCcce----EEEEECCE
Confidence 36789999999999999999998531100 011122222 12333467
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.+|||||+..+...+...++.+|++++|+|+.... .+.....++..++. ..++| +++++||+|+...
T Consensus 59 ~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~- 130 (173)
T cd04155 59 KLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK------RLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATA- 130 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC-
Confidence 8999999999988888888889999999999998541 12222333333332 23455 9999999998742
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++.+.+ .........+.++++||++|+|+.+++.
T Consensus 131 -~~~~~i~~~l----~~~~~~~~~~~~~~~Sa~~~~gi~~~~~ 168 (173)
T cd04155 131 -APAEEIAEAL----NLHDLRDRTWHIQACSAKTGEGLQEGMN 168 (173)
T ss_pred -CCHHHHHHHc----CCcccCCCeEEEEEeECCCCCCHHHHHH
Confidence 2222222222 1112222334688999999999998754
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=6.8e-17 Score=162.01 Aligned_cols=152 Identities=21% Similarity=0.206 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.-.|+|+|.+|||||||+|+|++....+.... +..|...........+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~------------------------------~~tt~~~i~~i~~~~~~ 53 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPK------------------------------PQTTRHRIRGIVTEDDA 53 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCC------------------------------CCcccccEEEEEEcCCc
Confidence 455799999999999999999997544322211 11111111112223457
Q ss_pred EEEEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.++||||||+... .......+..+|+++||+|+..+ +.....+++..+...+.| +++|+||+|
T Consensus 54 qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 54 QIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred eEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 8999999996542 23345567889999999999974 234455666666655666 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+... ...+.. .+..+....+ ...++++||++|.|+.+++
T Consensus 125 l~~~-~~~l~~---~~~~l~~~~~----~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 125 LVKD-KEELLP---LLEELSELMD----FAEIVPISALKGDNVDELL 163 (292)
T ss_pred CCCC-HHHHHH---HHHHHHhhCC----CCeEEEecCCCCCCHHHHH
Confidence 9732 222222 2333322222 3578999999999998754
No 170
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=5.7e-17 Score=147.69 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=98.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++|+|||||+++|++..... ......+.........+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 56 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------------GQGATIGVDFMIKTVEIKGEKI 56 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEE
Confidence 45889999999999999999998421100 0001111112222223333346
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|+..+.+ +.... .++..+.. .++| +|+|+||+|+....
T Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~ 128 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES------FRCLP-EWLREIEQYANNKVI-TILVGNKIDLAERR 128 (169)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 78999999999999888889999999999999986521 21122 22222322 2444 89999999986432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+....+...+... . ...++++||++|.|+.+++..
T Consensus 129 -~i~~~~~~~~~~~---~-----~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 129 -EVSQQRAEEFSDA---Q-----DMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred -ccCHHHHHHHHHH---c-----CCeEEEeeCCCCCCHHHHHHH
Confidence 1112222222222 1 247899999999999987654
No 171
>PLN03108 Rab family protein; Provisional
Probab=99.72 E-value=1e-16 Score=153.47 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=102.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..+||+|+|.+|+|||||+++|++..... ......+.++......+.....
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~-----------------------------~~~~ti~~~~~~~~i~~~~~~i 55 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMITIDNKPI 55 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCccceEEEEEEEECCEEE
Confidence 35789999999999999999998421100 0011223333333334444456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.||||||++.+...+..+++.+|++|+|+|++...+ +.....++..+.... ...|+|+|+||+|+......
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s------~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 129 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAV 129 (210)
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH------HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCC
Confidence 78999999999998888889999999999999996522 222223322222222 22349999999999743211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. .+...++++..+ ++++++||++|.||.++|..
T Consensus 130 ~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 130 S----TEEGEQFAKEHG-----LIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred C----HHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 1 122333444433 47899999999999998743
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.72 E-value=4.4e-17 Score=154.12 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=95.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|.+|+|||||+++|++...... ...+.+ ........+......+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-----------------------------~~~t~~-~~~~~~~~~~~~~~~l~ 50 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-----------------------------YRRTVE-EMHRKEYEVGGVSLTLD 50 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------------CCCchh-hheeEEEEECCEEEEEE
Confidence 589999999999999999984211000 000000 01111122223336789
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
||||||+..|......++..+|++|||+|++.+. .+..+.....++.......++| +|||+||+|+.... ..+.
T Consensus 51 i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~-~~v~- 124 (198)
T cd04147 51 ILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE---SFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEE-RQVP- 124 (198)
T ss_pred EEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-cccc-
Confidence 9999999999888888899999999999998652 2222222222222322223555 99999999997421 1111
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.....+... .. ..+.++++||++|.||.+++..
T Consensus 125 -~~~~~~~~~-~~---~~~~~~~~Sa~~g~gv~~l~~~ 157 (198)
T cd04147 125 -AKDALSTVE-LD---WNCGFVETSAKDNENVLEVFKE 157 (198)
T ss_pred -HHHHHHHHH-hh---cCCcEEEecCCCCCCHHHHHHH
Confidence 111111111 11 1347899999999999987643
No 173
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.72 E-value=7.3e-17 Score=158.89 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..-.. ....+.+ ........+......+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-----------------------------~y~pTi~-d~~~k~~~i~~~~~~l 50 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-----------------------------QYTPTIE-DFHRKLYSIRGEVYQL 50 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCChh-HhEEEEEEECCEEEEE
Confidence 379999999999999999998421100 0000011 0111222333445788
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH-------h-cCCCeEEEEEeCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-------S-FGVDQLIVAVNKMDAV 418 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-------~-~~vp~IIVVvNKiDl~ 418 (471)
.||||+|++.|......++..+|++|||+|++... +++.+..+..++...-. . .++ |+|||+||+|+.
T Consensus 51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~---Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~-piIivgNK~Dl~ 126 (247)
T cd04143 51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE---SFEEVCRLREQILETKSCLKNKTKENVKI-PMVICGNKADRD 126 (247)
T ss_pred EEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhhcccccccccCCCC-cEEEEEECccch
Confidence 99999999998887777888999999999999662 22222222222222100 1 234 499999999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.......+ ++.+++... ..+.++++||++|.||.+++..
T Consensus 127 ~~~~v~~~----ei~~~~~~~----~~~~~~evSAktg~gI~elf~~ 165 (247)
T cd04143 127 FPREVQRD----EVEQLVGGD----ENCAYFEVSAKKNSNLDEMFRA 165 (247)
T ss_pred hccccCHH----HHHHHHHhc----CCCEEEEEeCCCCCCHHHHHHH
Confidence 42222222 333333211 2357899999999999988653
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=2.8e-17 Score=173.13 Aligned_cols=145 Identities=25% Similarity=0.276 Sum_probs=106.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++|||||||+|+|++....+ ....+|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI------------------------------VSDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce------------------------------ecCCCCcccCceEEEEEECCeEEE
Confidence 48999999999999999999643211 112356666666666667788999
Q ss_pred EEeCCCCC--------CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 348 VLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 348 LIDTPG~e--------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
||||||+. .+...+..++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+..
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~ 121 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDGKK 121 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccCCc
Confidence 99999963 3445567778899999999999977 445667778888888877 999999999874
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... .. .+..+++. .++++||++|.|+.+++.
T Consensus 122 ~~~~-----~~----~~~~lg~~----~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 122 EDAV-----AA----EFYSLGFG----EPIPISAEHGRGIGDLLD 153 (429)
T ss_pred cccc-----HH----HHHhcCCC----CeEEEeCCcCCChHHHHH
Confidence 3211 11 12334542 469999999999987654
No 175
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.71 E-value=1.1e-16 Score=165.48 Aligned_cols=169 Identities=27% Similarity=0.358 Sum_probs=136.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..+||+|+.|+++|||||+..|+.+.+....+.- -..-.||....++++|+|+-.....+.+++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~---------------v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREE---------------VAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccc---------------hhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 34578999999999999999999976654433210 012468888899999999998888899999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.|+|||||.+|.-+..+.+.-.|++|||||+..| -.+|++..+.-+-+.+.+| |||+||+|+..+..
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG--------pMPQTrFVlkKAl~~gL~P-IVVvNKiDrp~Arp- 137 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALALGLKP-IVVINKIDRPDARP- 137 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC--------CCCchhhhHHHHHHcCCCc-EEEEeCCCCCCCCH-
Confidence 9999999999999999999999999999999999988 5689999998888899984 88999999986643
Q ss_pred hHHHHHHHHHHHHHhcCCCCC--CccEEEEecccCCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDA--SLTWIPLSALENQNL 459 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~--~i~IIpvSAktG~gI 459 (471)
+++..+.-.++-.++..+. ..+++..||+.|.--
T Consensus 138 --~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~ 173 (603)
T COG1217 138 --DEVVDEVFDLFVELGATDEQLDFPIVYASARNGTAS 173 (603)
T ss_pred --HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceec
Confidence 3444444455555444332 368999999998643
No 176
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=2.1e-17 Score=149.70 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=109.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|.|+|.+|+|||+|+.+++.... ......+.|+.+.+....++....
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-----------------------------d~~~~~tIGvDFkvk~m~vdg~~~ 60 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF-----------------------------DDLHPTTIGVDFKVKVMQVDGKRL 60 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc-----------------------------CccCCceeeeeEEEEEEEEcCceE
Confidence 458899999999999999999983111 011122356666677777788889
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
++.||||+||++|+..+.++++.|.++|+|+|++...++ ..+..+.+|+-.+.....+- .++|+||+|.......
T Consensus 61 KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf---~kLd~W~~Eld~Ystn~dii-kmlVgNKiDkes~R~V- 135 (209)
T KOG0080|consen 61 KLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTF---VKLDIWLKELDLYSTNPDII-KMLVGNKIDKESERVV- 135 (209)
T ss_pred EEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhH---HhHHHHHHHHHhhcCCccHh-Hhhhcccccchhcccc-
Confidence 999999999999999999999999999999999977332 21211222222111112222 4789999997532111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
-+++-.++.+.++ ..|+++||++.+|+..+|.+
T Consensus 136 ---~reEG~kfAr~h~-----~LFiE~SAkt~~~V~~~Fee 168 (209)
T KOG0080|consen 136 ---DREEGLKFARKHR-----CLFIECSAKTRENVQCCFEE 168 (209)
T ss_pred ---cHHHHHHHHHhhC-----cEEEEcchhhhccHHHHHHH
Confidence 1233344544443 58899999999999877654
No 177
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.71 E-value=4.8e-17 Score=144.58 Aligned_cols=150 Identities=21% Similarity=0.193 Sum_probs=95.5
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEE
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~L 348 (471)
|+|+|++|+|||||+++|++..... +..+.+..... .+......+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-------------------------------~~~~t~~~~~~--~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-------------------------------DTIPTVGFNMR--KVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-------------------------------CccCCCCcceE--EEEECCEEEEE
Confidence 8999999999999999998531110 00011111111 12334578999
Q ss_pred EeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChhhH
Q 012085 349 LDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 349 IDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
|||||+..+...+..++..+|++|+|+|++... .+.....++..++.. .++| +++|+||+|+... ...
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~--~~~ 119 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT------ALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGA--LSV 119 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC--cCH
Confidence 999999999988889999999999999998541 122222233333322 3445 9999999998743 222
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+++...+. ........++++++||++|.||.+++.
T Consensus 120 ~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 120 DELIEQMN----LKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred HHHHHHhC----cccccCCceEEEEEEeccCCChHHHHH
Confidence 22222211 111112346889999999999998653
No 178
>PRK04213 GTP-binding protein; Provisional
Probab=99.71 E-value=7.6e-17 Score=152.11 Aligned_cols=156 Identities=22% Similarity=0.276 Sum_probs=94.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++... .....+|+|+......+ .
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~--~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNHYDW--G-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceEEee--c--
Confidence 457899999999999999999985321 11122355544333222 2
Q ss_pred EEEEEeCCCC-----------CCchhhhhh----ccccCCEEEEEEeCCCCccccc-cc--hhhhHHHHHHHHHHhcCCC
Q 012085 345 HVVVLDSPGH-----------KDFVPNMIS----GATQSDAAILVIDASVGSFEVG-MN--TAKGLTREHAQLIRSFGVD 406 (471)
Q Consensus 345 ~l~LIDTPG~-----------e~f~~~~~~----~l~~aD~vIlVVDas~g~~e~~-~~--~l~~~~~e~l~ll~~~~vp 406 (471)
.++||||||+ +.+...+.. .+..++++++|+|+........ +. .......++...+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5899999994 334433333 3445789999999864311000 00 0112345556666667777
Q ss_pred eEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC----CCCccEEEEecccCCCccccCC
Q 012085 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK----DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 407 ~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~----~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|||+||+|+.... .+....+.. .++.. ....+++++||++| ||.+++.
T Consensus 133 -~iiv~NK~Dl~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~ 185 (201)
T PRK04213 133 -PIVAVNKMDKIKNR----DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-GIEELKE 185 (201)
T ss_pred -eEEEEECccccCcH----HHHHHHHHH---HhcCCccccccCCcEEEEecccC-CHHHHHH
Confidence 89999999997432 112222222 22321 11236899999999 9998654
No 179
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.71 E-value=4.9e-17 Score=148.17 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|+|||||+++|++..- ... .....+ ........+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~---------------------------~~~t~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGE---------------------------YDPNLE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccc---------------------------cCCChH-HhceEEEEECCEEEEEE
Confidence 489999999999999999984210 000 000000 01111222344456789
Q ss_pred EEeCCCCCC-chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeCCCCCCCC
Q 012085 348 VLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 348 LIDTPG~e~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNKiDl~~~~ 421 (471)
||||||+.. +.......++.+|++|+|+|++.+.+ +. .. ..+...+.. .+.| +|+|+||+|+....
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EI-SQLKQLIREIKKRDREIP-VILVGNKADLLHYR 122 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HH-HHHHHHHHHHhcCCCCCC-EEEEEECCchHHhC
Confidence 999999985 34556678889999999999997622 22 22 222222222 2445 99999999986321
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC-CCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN-QNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG-~gI~e~~~~ 465 (471)
... .+....+.+..+ .+++++||++| .||.++|..
T Consensus 123 ~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 123 QVS----TEEGEKLASELG-----CLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ccC----HHHHHHHHHHcC-----CEEEEeCCCCCchhHHHHHHH
Confidence 111 122233333333 47899999999 499998754
No 180
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=8.3e-17 Score=141.59 Aligned_cols=154 Identities=24% Similarity=0.265 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC--e
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN--Y 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~ 344 (471)
+||+|+|.+|+|||||+++|++.. . ..+..++++.......+...+ .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999998532 1 111123444444443334444 7
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhh-hHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAK-GLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~-~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.+|||||+..+.......+..++.+++++|...... ++.... .....+...+.. +.| ++||+||+|+....
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~--~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVL--DVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeeh--hhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch--
Confidence 88999999999987777677777778887777764311 111111 233333333322 555 99999999997432
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+...+...+...+. .+++++||++|.|+.+++..
T Consensus 125 ----~~~~~~~~~~~~~~----~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG----EPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred ----hhHHHHHHHhhccC----CceEEeecCCCCCHHHHHHH
Confidence 33444444444432 35899999999999987643
No 181
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=1.1e-16 Score=147.78 Aligned_cols=156 Identities=15% Similarity=0.013 Sum_probs=98.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++..-.. ....++.+.........+.....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~----------------------------~~~~~T~~~~~~~~~~~~~~~~~ 54 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSL----------------------------NAYSPTIKPRYAVNTVEVYGQEK 54 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCc----------------------------ccCCCccCcceEEEEEEECCeEE
Confidence 46889999999999999999998421100 00111122222222233444446
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.+||++|++.+......++..+|++|||+|++.+.+ +... .+++..+.. .++| +|+|+||+|+......
T Consensus 55 ~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s------~~~~-~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~ 126 (169)
T cd01892 55 YLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS------FSYC-AEVYKKYFMLGEIP-CLFVAAKADLDEQQQR 126 (169)
T ss_pred EEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH------HHHH-HHHHHHhccCCCCe-EEEEEEcccccccccc
Confidence 78999999999988888888899999999999986521 2111 233332322 2444 9999999999643211
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. ......+.+.+++. .++++||++|.|+.+++.
T Consensus 127 ~----~~~~~~~~~~~~~~----~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 127 Y----EVQPDEFCRKLGLP----PPLHFSSKLGDSSNELFT 159 (169)
T ss_pred c----ccCHHHHHHHcCCC----CCEEEEeccCccHHHHHH
Confidence 0 11122333334432 348999999999998764
No 182
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.71 E-value=1.1e-16 Score=149.11 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=108.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+..+|+|+|..|+|||||+++|...... ...+ |.......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~------------------------------~~~p----T~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS------------------------------ETIP----TIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE------------------------------EEEE----ESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc------------------------------ccCc----ccccccceeeeCc
Confidence 56789999999999999999999832110 0111 2223334455688
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~ 421 (471)
..+.|||.+|+..+...+..++..+|++|||||+++. ..+.....++..++.. ....|++|++||+|+.+..
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEecccc------eeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 9999999999999999999999999999999999954 2344455555555543 2223599999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+++...+. +..+. ....+.++++||++|+||.+.+
T Consensus 132 --~~~~i~~~l~--l~~l~-~~~~~~v~~~sa~~g~Gv~e~l 168 (175)
T PF00025_consen 132 --SEEEIKEYLG--LEKLK-NKRPWSVFSCSAKTGEGVDEGL 168 (175)
T ss_dssp --THHHHHHHTT--GGGTT-SSSCEEEEEEBTTTTBTHHHHH
T ss_pred --hhhHHHhhhh--hhhcc-cCCceEEEeeeccCCcCHHHHH
Confidence 2233333222 11222 2456789999999999998864
No 183
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.1e-16 Score=164.22 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=98.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-CCe
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 344 (471)
...|+|||.+||||||||++|++....+.. .++.|+......+.. ...
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~-------------------------------ypfTT~~p~~G~v~~~~~~ 206 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIAD-------------------------------YPFTTLHPNLGVVRVDDYK 206 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCC-------------------------------CCCceeCceEEEEEeCCCc
Confidence 456999999999999999999853221111 123344433333444 456
Q ss_pred EEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 345 ~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
.|+||||||+.+ +...+++++..++++|+|||++... .++.+..+..++..+...+..+|+|||+||+|+
T Consensus 207 ~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~---s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL 283 (335)
T PRK12299 207 SFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVD---PVEDYKTIRNELEKYSPELADKPRILVLNKIDL 283 (335)
T ss_pred EEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCC---CHHHHHHHHHHHHHhhhhcccCCeEEEEECccc
Confidence 799999999642 4556777888999999999998642 233232333333332222222349999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... .. ...+..++... .++++++||++++||.+++.
T Consensus 284 ~~~~~-~~---~~~~~~~~~~~-----~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 284 LDEEE-ER---EKRAALELAAL-----GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred CCchh-HH---HHHHHHHHHhc-----CCCEEEEEcCCCCCHHHHHH
Confidence 74321 11 11222222222 25789999999999998754
No 184
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.70 E-value=1.1e-16 Score=142.69 Aligned_cols=140 Identities=25% Similarity=0.256 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+++|++|+|||||+++|++....... ...+.+.......+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS------------------------------DIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc------------------------------CCCCCccceEEEEEEeCCEEE
Confidence 47999999999999999999953321111 113334443334445567789
Q ss_pred EEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH-hcCCCeEEEEEeCCCC
Q 012085 347 VVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDA 417 (471)
Q Consensus 347 ~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~vp~IIVVvNKiDl 417 (471)
++|||||+.++.. .....+..+|++++|+|+..+... .. ..++. ..+.| +|+|+||+|+
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~--------~~---~~~~~~~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDE--------ED---LEILELPADKP-IIVVLNKSDL 119 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCH--------HH---HHHHHhhcCCC-EEEEEEchhc
Confidence 9999999766532 234567789999999999975221 11 11222 33444 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... . . ......+++++||+++.|+.++..
T Consensus 120 ~~~~~--~---------~-----~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 120 LPDSE--L---------L-----SLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CCccc--c---------c-----cccCCCceEEEECCCCCCHHHHHH
Confidence 84321 1 1 111245789999999999988653
No 185
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=1.1e-16 Score=172.97 Aligned_cols=154 Identities=28% Similarity=0.398 Sum_probs=120.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|++++|||||+++|+...+.+..... ..++++.. ...++....++.+|+++......+++.
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~~~-~t~~D~~~~E~~rgisi~~~~~~~~~~ 78 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGSQR-HAKSDWMEMEKQRGISITTSVMQFPYR 78 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccccc-cccCCCCHHHHhcCCcEEEEEEEEeeC
Confidence 356789999999999999999999976665543211 11111111 234677889999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..+.|||||||.+|...+..+++.+|++|+|+|+..+ +..++..++++++..++| +|+++||+|+...+
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~- 148 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD- 148 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCC-
Confidence 99999999999999999899999999999999999976 456677778888777877 99999999997433
Q ss_pred hhHHHHHHHHHHHHH
Q 012085 423 DRFDSIKVQLGTFLR 437 (471)
Q Consensus 423 e~~eei~~~L~~~l~ 437 (471)
..++.+.++..+.
T Consensus 149 --~~~ll~~i~~~l~ 161 (527)
T TIGR00503 149 --PLELLDEVENELK 161 (527)
T ss_pred --HHHHHHHHHHHhC
Confidence 3445566666553
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=8.5e-17 Score=169.92 Aligned_cols=146 Identities=24% Similarity=0.269 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+|+|++....+. ...+|+|.+.....+...+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 4799999999999999999985432111 1124555555555555667899
Q ss_pred EEEeCCCCCC--------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 347 VVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 347 ~LIDTPG~e~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.||||||+.. +......++..+|++|||+|+..+ +.....++..+++..+.| +|+|+||+|+.
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~~ 122 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDGP 122 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCc
Confidence 9999999887 333455678889999999999976 334445666777777777 99999999975
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .. .+..+ ..+++. .++++||++|.|+.+++.
T Consensus 123 ~~-~~-------~~~~~-~~lg~~----~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 123 DE-EA-------DAYEF-YSLGLG----EPYPISAEHGRGIGDLLD 155 (435)
T ss_pred cc-hh-------hHHHH-HhcCCC----CCEEEEeeCCCCHHHHHH
Confidence 31 11 11111 233442 359999999999988754
No 187
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.70 E-value=9.7e-17 Score=148.26 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.||+|+|.+|+|||||+++|++....... ....+... .....+......+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~~~~ 51 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY-----------------------------YPTIENTF-SKIIRYKGQDYHL 51 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc-----------------------------CcchhhhE-EEEEEECCEEEEE
Confidence 57999999999999999999842210000 00000000 1111222234578
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCChh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~e 423 (471)
.||||||+.+|......++..++++|+|+|++... .+.....++..+++. .+.| +|+|+||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~ 124 (180)
T cd04137 52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK------SFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQV 124 (180)
T ss_pred EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCcc
Confidence 99999999999888888899999999999999652 222333333344433 2445 9999999998642111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ..+..+...++ ++++++||++|.|+.+++..
T Consensus 125 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~~ 157 (180)
T cd04137 125 ST----EEGKELAESWG-----AAFLESSARENENVEEAFEL 157 (180)
T ss_pred CH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 11 12223333333 47899999999999987643
No 188
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.70 E-value=4.6e-17 Score=185.00 Aligned_cols=171 Identities=26% Similarity=0.331 Sum_probs=129.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (471)
..+.+||+|+|++++|||||+++|++..+.+.... .+ ..+.+|....|+.+|+|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGISLYYE 80 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeEEEee
Confidence 44678999999999999999999998777654421 11 234678889999999999866554544
Q ss_pred ---------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC
Q 012085 342 ---------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (471)
Q Consensus 342 ---------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp 406 (471)
.++.++|||||||.+|...+..+++.+|++|+|||+..| +..+++.++.++...++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p 152 (843)
T PLN00116 81 MTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIR 152 (843)
T ss_pred cccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCC
Confidence 267889999999999999999999999999999999988 567888899999998988
Q ss_pred eEEEEEeCCCCCCCC--------hhhHHHHHHHHHHHHHhcC--------CCCCCccEEEEecccCC
Q 012085 407 QLIVAVNKMDAVQYS--------KDRFDSIKVQLGTFLRSCG--------FKDASLTWIPLSALENQ 457 (471)
Q Consensus 407 ~IIVVvNKiDl~~~~--------~e~~eei~~~L~~~l~~~g--------~~~~~i~IIpvSAktG~ 457 (471)
+||++||||+.... ...++.+.+.++.++..++ +.+..-.++..|++.|.
T Consensus 153 -~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~ 218 (843)
T PLN00116 153 -PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGW 218 (843)
T ss_pred -EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCE
Confidence 89999999997211 1456666777764444332 11222345566776653
No 189
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=1.1e-16 Score=158.92 Aligned_cols=163 Identities=29% Similarity=0.400 Sum_probs=117.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++|+|||||+++|++..+.+..... ...+ .+..+....++.+++++......+.+.+..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~-------v~~g------~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGS-------VEDG------TTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCe-------ecCC------cccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 5899999999999999999976554432210 0001 23445566677788888877778888899999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
||||||+.+|...+...++.+|++|+|+|+..+ ...++..++.++...++| +++|+||+|+... .++.
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~---~~~~ 135 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIP-RIIFINKMDRERA---DFDK 135 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCccCCC---CHHH
Confidence 999999999998999999999999999999977 334566667777788887 8899999999754 3444
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
..+.++..+ +. .+.-+.+...+|.|+..
T Consensus 136 ~~~~l~~~~---~~---~~~~~~ip~~~~~~~~~ 163 (268)
T cd04170 136 TLAALQEAF---GR---PVVPLQLPIGEGDDFKG 163 (268)
T ss_pred HHHHHHHHh---CC---CeEEEEecccCCCceeE
Confidence 555555554 21 11223344666666543
No 190
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.70 E-value=3e-16 Score=143.95 Aligned_cols=157 Identities=15% Similarity=0.090 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.||+|+|.+|+|||||+++|++..-.. ......+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-----------------------------VYVPTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccccce-EEEEEECCEEEEE
Confidence 579999999999999999998421100 0000111111 1122334445678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.+.......+..+|++++|+|+....+ +......+...+.. .++| +++|+||+|+..... .
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s------~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~ 123 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS------LENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEH-T 123 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChh-h
Confidence 999999999888877778899999999999986521 22222223333332 2445 999999999864211 1
Q ss_pred HHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+ ....+++.+..+ ..+++++||++|.||.++|..
T Consensus 124 ~~~i~~~~~~~v~~~~~~~~~~~~~----~~~~~~~Sa~~~~~v~~lf~~ 169 (175)
T cd01870 124 RRELAKMKQEPVKPEEGRDMANKIG----AFGYMECSAKTKEGVREVFEM 169 (175)
T ss_pred hhhhhhccCCCccHHHHHHHHHHcC----CcEEEEeccccCcCHHHHHHH
Confidence 1111 122233333333 247899999999999998743
No 191
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=1.4e-16 Score=163.21 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=97.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (471)
....|+|||.+|||||||+++|+.....+.. .+..|.......+...+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~-------------------------------y~fTT~~p~ig~v~~~~~ 204 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIAD-------------------------------YPFTTLVPNLGVVRVDDG 204 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccC-------------------------------CCCCccCCEEEEEEeCCc
Confidence 3456999999999999999999853221111 01122222222233344
Q ss_pred eEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 344 ~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
..++||||||+.. +...+++.+..++++|+|+|++.......++.+.....++..+...+..+|+|||+||+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 7899999999642 445567778889999999999854111222233333333333322222334999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+... ...+++.+.+ .+.++ ++|+++||++++||.+++.
T Consensus 285 L~~~--~~~~~~~~~l---~~~~~-----~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 285 LLDE--EELAELLKEL---KKALG-----KPVFPISALTGEGLDELLY 322 (329)
T ss_pred CCCh--HHHHHHHHHH---HHHcC-----CcEEEEEccCCcCHHHHHH
Confidence 9743 2223333222 22222 4789999999999998754
No 192
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.69 E-value=2.1e-16 Score=153.30 Aligned_cols=157 Identities=14% Similarity=0.131 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|..|||||||+++|++..-. . ...++.+.... ....++.....+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~---------------------------~y~pTi~~~~~-~~~~~~~~~v~L 51 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--G---------------------------SYVPTVFENYT-ASFEIDKRRIEL 51 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--C---------------------------ccCCccccceE-EEEEECCEEEEE
Confidence 68999999999999999999842100 0 00011111111 112334455788
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||+|++.|...+..+++.+|++|||+|++... .+......+...+... +.| +|||+||+|+.... ..
T Consensus 52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~------Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~-~~ 123 (222)
T cd04173 52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE------TLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDL-AT 123 (222)
T ss_pred EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccch-hh
Confidence 99999999999988888999999999999999762 2333333333333322 344 99999999996421 11
Q ss_pred HHH---------HHHHHHHHHHhcCCCCCCccEEEEecccCCC-ccccCCc
Q 012085 425 FDS---------IKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDD 465 (471)
Q Consensus 425 ~ee---------i~~~L~~~l~~~g~~~~~i~IIpvSAktG~g-I~e~~~~ 465 (471)
... ..++...+.+..+ .++|+++||++++| |.++|..
T Consensus 124 ~~~~~~~~~~pIs~e~g~~~ak~~~----~~~y~E~SAk~~~~~V~~~F~~ 170 (222)
T cd04173 124 LRELSKQRLIPVTHEQGTVLAKQVG----AVSYVECSSRSSERSVRDVFHV 170 (222)
T ss_pred hhhhhhccCCccCHHHHHHHHHHcC----CCEEEEcCCCcCCcCHHHHHHH
Confidence 111 1123333333443 24789999999995 9988764
No 193
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=2.8e-16 Score=146.97 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=98.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++.... .......|.|.......+ +.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~---~~ 70 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNL-----------------------------ARTSKTPGRTQLINFFEV---ND 70 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCc-----------------------------ccccCCCCceeEEEEEec---CC
Confidence 4578999999999999999999953100 001112344443333222 36
Q ss_pred EEEEEeCCCCC----------Cchhhhhhccc---cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEE
Q 012085 345 HVVVLDSPGHK----------DFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (471)
Q Consensus 345 ~l~LIDTPG~e----------~f~~~~~~~l~---~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVV 411 (471)
.+.||||||+. .+......+++ .++++++|+|+..+. .....++..++...+.| +++|
T Consensus 71 ~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~~~~~~i~~~l~~~~~~-~iiv 141 (196)
T PRK00454 71 KLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPL--------KELDLQMIEWLKEYGIP-VLIV 141 (196)
T ss_pred eEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCC--------CHHHHHHHHHHHHcCCc-EEEE
Confidence 89999999953 22222233333 457888999988652 23334455566667777 9999
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+||+|+.. ....+.+...+...+... ...++|+||++|.|+.+++.
T Consensus 142 ~nK~Dl~~--~~~~~~~~~~i~~~l~~~-----~~~~~~~Sa~~~~gi~~l~~ 187 (196)
T PRK00454 142 LTKADKLK--KGERKKQLKKVRKALKFG-----DDEVILFSSLKKQGIDELRA 187 (196)
T ss_pred EECcccCC--HHHHHHHHHHHHHHHHhc-----CCceEEEEcCCCCCHHHHHH
Confidence 99999973 333444455555555432 35789999999999988754
No 194
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.69 E-value=2.8e-16 Score=140.70 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|++|+|||||+++|++.... ... ....+ ........+......+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~----------------------------~~~~~-~~~~~~~~~~~~~~~~~ 50 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-EEY----------------------------DPTIE-DSYRKTIVVDGETYTLD 50 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cCc----------------------------CCChh-HeEEEEEEECCEEEEEE
Confidence 5899999999999999999853210 000 00000 11111122233356789
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCChhhH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~~e~~ 425 (471)
+||+||+..+.......++.+|++|+|+|.....+ +......+..+..... ..|+++|+||+|+.......
T Consensus 51 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 123 (160)
T cd00876 51 ILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES------FEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS- 123 (160)
T ss_pred EEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec-
Confidence 99999999988888888999999999999986521 2222233333333332 33599999999997522222
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+.+..+....+ .+++++||++|.|+.+++..
T Consensus 124 ---~~~~~~~~~~~~-----~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 124 ---KEEGKALAKEWG-----CPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred ---HHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHHH
Confidence 233334443333 47899999999999987643
No 195
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.69 E-value=2.3e-16 Score=150.59 Aligned_cols=146 Identities=20% Similarity=0.151 Sum_probs=96.3
Q ss_pred EcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEeC
Q 012085 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (471)
Q Consensus 272 VG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LIDT 351 (471)
+|..|||||||+++|++... . .....+.|.........+......+.||||
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~---------------------------~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt 51 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNRGPIRFNVWDT 51 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--C---------------------------CCCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 69999999999999983110 0 001112333333333344455678999999
Q ss_pred CCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCChhhHHHHH
Q 012085 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (471)
Q Consensus 352 PG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~e~~eei~ 429 (471)
||+++|...+..+++.+|++|+|+|++...+ +..... ++..+.. .++| +|||+||+|+.... ...+
T Consensus 52 ~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S------~~~i~~-w~~~i~~~~~~~p-iilvgNK~Dl~~~~-v~~~--- 119 (200)
T smart00176 52 AGQEKFGGLRDGYYIQGQCAIIMFDVTARVT------YKNVPN-WHRDLVRVCENIP-IVLCGNKVDVKDRK-VKAK--- 119 (200)
T ss_pred CCchhhhhhhHHHhcCCCEEEEEEECCChHH------HHHHHH-HHHHHHHhCCCCC-EEEEEECccccccc-CCHH---
Confidence 9999999999999999999999999997632 222323 3333332 2445 99999999986321 1111
Q ss_pred HHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+ .+.... .+.|+++||++|+||.++|..
T Consensus 120 -~~-~~~~~~-----~~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 120 -SI-TFHRKK-----NLQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred -HH-HHHHHc-----CCEEEEEeCCCCCCHHHHHHH
Confidence 11 222222 358899999999999998753
No 196
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=3.4e-16 Score=169.29 Aligned_cols=153 Identities=29% Similarity=0.412 Sum_probs=118.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|++|+|||||+++|+...+.+...... .++.. .....++....++.+|+++......+.+.
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~~-~~~~~~D~~~~E~~rgiSi~~~~~~~~~~ 77 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRKS-GRHATSDWMEMEKQRGISVTSSVMQFPYR 77 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------ecccc-CccccCCCcHHHHhhCCceeeeeEEEEEC
Confidence 3467899999999999999999999766655432110 00000 01123566788899999999998899999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||.+|...+..+++.+|++|+|+|+..+ +..+++.++.++...++| +|+++||+|+....
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~- 147 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE- 147 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccC-
Confidence 99999999999999999999999999999999999977 456778888888888888 99999999987543
Q ss_pred hhHHHHHHHHHHHH
Q 012085 423 DRFDSIKVQLGTFL 436 (471)
Q Consensus 423 e~~eei~~~L~~~l 436 (471)
..++...++..+
T Consensus 148 --~~~~l~~i~~~l 159 (526)
T PRK00741 148 --PLELLDEIEEVL 159 (526)
T ss_pred --HHHHHHHHHHHh
Confidence 233445555544
No 197
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.68 E-value=4.3e-16 Score=140.91 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=105.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|..++|||||+++|.+..- ........|.........++.....+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-----------------------------PENYIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-----------------------------TSSSETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-----------------------------ccccccccccccccccccccccccccc
Confidence 699999999999999999984210 001112233444444444556667899
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC-CCeEEEEEeCCCCCCCChhhHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-vp~IIVVvNKiDl~~~~~e~~e 426 (471)
|||++|++.|.......++.+|++|+|+|.++. ..+.....+...+..... .+|++||+||.|+.....-..
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~------~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~- 124 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE------ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSV- 124 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBH------HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCH-
T ss_pred ccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccceeeeccccccccccchh-
Confidence 999999999988888889999999999999865 223344433333333333 256999999999874222222
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+....+++..+ .+++++||+++.||.++|..
T Consensus 125 ---~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 125 ---EEAQEFAKELG-----VPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp ---HHHHHHHHHTT-----SEEEEEBTTTTTTHHHHHHH
T ss_pred ---hHHHHHHHHhC-----CEEEEEECCCCCCHHHHHHH
Confidence 23444444443 58899999999999988754
No 198
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.5e-16 Score=164.42 Aligned_cols=153 Identities=29% Similarity=0.405 Sum_probs=132.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
.|+..|+..+|||||+.+|++ ...+..+++..+|+|+++.+.++..++..+.
T Consensus 2 ii~t~GhidHgkT~L~~altg----------------------------~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTG----------------------------GVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhcc----------------------------cccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 489999999999999999985 2346678888999999999999999999999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
|||.|||++|...++.++...|.+||||++..| +..++.||+.++..+++++.|||+||+|+++ ..++++
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~d--~~r~e~ 123 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRVD--EARIEQ 123 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEecccccc--HHHHHH
Confidence 999999999999999999999999999999988 7899999999999999999999999999984 445555
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+++...+. + .+.++|++|+.+|+||.++.
T Consensus 124 ~i~~Il~~l~---l--~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 124 KIKQILADLS---L--ANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred HHHHHHhhcc---c--ccccccccccccCCCHHHHH
Confidence 5555444443 3 45678999999999998764
No 199
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=5.8e-17 Score=144.08 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=84.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|++|+|||||+++|++.... ...|... ++.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-----------------------------------~~~t~~~-----~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-----------------------------------YKKTQAV-----EYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-----------------------------------cccceeE-----EEcC---e
Confidence 6999999999999999999842100 0001111 1111 6
Q ss_pred EEeCCCCC----CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 348 VLDSPGHK----DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 348 LIDTPG~e----~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
+|||||+. .+...+...++.+|++|+|+|++.+.+... .++... ...| +|+|+||+|+... ..
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~--------~~~~~~---~~~p-~ilv~NK~Dl~~~-~~ 105 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFP--------PGFASI---FVKP-VIGLVTKIDLAEA-DV 105 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCCC--------hhHHHh---ccCC-eEEEEEeeccCCc-cc
Confidence 89999973 233333345789999999999997743211 122222 2334 9999999999742 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +.+.++++..+. .+++++||++|.|+.+++.
T Consensus 106 ~~----~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 106 DI----ERAKELLETAGA----EPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CH----HHHHHHHHHcCC----CcEEEEecCCCCCHHHHHH
Confidence 22 233334444332 3689999999999998764
No 200
>PTZ00416 elongation factor 2; Provisional
Probab=99.68 E-value=2.1e-16 Score=179.43 Aligned_cols=171 Identities=26% Similarity=0.318 Sum_probs=129.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
.+.+||+|+|++++|||||+++|++..+.+... ..+. .+.++....|+.+|+|+......+.+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~----------~~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~~ 81 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK----------NAGD-----ARFTDTRADEQERGITIKSTGISLYYEH 81 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc----------cCCc-----eeecccchhhHhhcceeeccceEEEeec
Confidence 456799999999999999999999877765432 1111 345788899999999998665555443
Q ss_pred ---------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 343 ---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 343 ---------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
++.++|+|||||.+|...+...++.+|++|+|+|+..+ +..+++.++..+...++| +|+++|
T Consensus 82 ~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 82 DLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred ccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCC-EEEEEE
Confidence 67899999999999999999999999999999999988 567888888888888887 899999
Q ss_pred CCCCC----CCC----hhhHHHHHHHHHHHHHhc--------CCCCCCccEEEEecccCCC
Q 012085 414 KMDAV----QYS----KDRFDSIKVQLGTFLRSC--------GFKDASLTWIPLSALENQN 458 (471)
Q Consensus 414 KiDl~----~~~----~e~~eei~~~L~~~l~~~--------g~~~~~i~IIpvSAktG~g 458 (471)
|||+. +.. ...+..+.+.++..+..+ .+.+...++...|+..|.+
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~ 213 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWA 213 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccce
Confidence 99997 211 134666777777666522 2233334455567765443
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=2.2e-16 Score=176.80 Aligned_cols=155 Identities=18% Similarity=0.162 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|||||||+|+|++....+. ....|+|.+.....+...+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v------------------------------~~~~gtT~d~~~~~~~~~~~~ 499 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVV------------------------------NDLAGTTRDPVDEIVEIDGED 499 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccc------------------------------CCCCCCCcCcceeEEEECCCE
Confidence 47899999999999999999996432211 112445554444445556778
Q ss_pred EEEEeCCCCCC---------chhh--hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 346 VVVLDSPGHKD---------FVPN--MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 346 l~LIDTPG~e~---------f~~~--~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
+.||||||+.+ +... ...+++.+|++|+|+|++.+. ..+...++..+...++| +|||+||
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~--------s~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPI--------SEQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEEc
Confidence 99999999642 1111 234578899999999999873 33444555666666777 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+|+... ...+.+...+...+... ...+++++||++|.||.+++..
T Consensus 571 ~DL~~~--~~~~~~~~~~~~~l~~~----~~~~ii~iSAktg~gv~~L~~~ 615 (712)
T PRK09518 571 WDLMDE--FRRQRLERLWKTEFDRV----TWARRVNLSAKTGWHTNRLAPA 615 (712)
T ss_pred hhcCCh--hHHHHHHHHHHHhccCC----CCCCEEEEECCCCCCHHHHHHH
Confidence 999742 22233333343333222 3357899999999999987653
No 202
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.68 E-value=3e-16 Score=151.73 Aligned_cols=152 Identities=17% Similarity=0.076 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+||+|+|.+|+|||||+++|++..... .......+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~----------------------------~~~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD----------------------------HAYDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc----------------------------cCcCCCccccceEEEEEECCEEEEE
Confidence 479999999999999999997311100 0001111111222223344456789
Q ss_pred EEEeCCCCCCchhhhhhccc-cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGAT-QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~-~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~~~ 421 (471)
.||||||++.+. ....+. .+|++|+|+|++...+ +... .+++..+.. .++| +|+|+||+|+....
T Consensus 53 ~i~Dt~G~~~~~--~~~~~~~~ad~iilV~d~td~~S------~~~~-~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~ 122 (221)
T cd04148 53 VVIDHWEQEMWT--EDSCMQYQGDAFVVVYSVTDRSS------FERA-SELRIQLRRNRQLEDRP-IILVGNKSDLARSR 122 (221)
T ss_pred EEEeCCCcchHH--HhHHhhcCCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhcCCCCCC-EEEEEEChhccccc
Confidence 999999998332 223445 8999999999997622 2222 223333333 2345 99999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
....+ ....+....+ +.++++||++|.||.+++..
T Consensus 123 ~v~~~----~~~~~a~~~~-----~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 123 EVSVQ----EGRACAVVFD-----CKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred eecHH----HHHHHHHHcC-----CeEEEecCCCCCCHHHHHHH
Confidence 11111 1222333333 46899999999999987643
No 203
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=2.8e-16 Score=167.81 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=101.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+....|+|||.+|||||||||+|++....+ ...++.|+......+...+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~~~ 205 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQAGD 205 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEECC
Confidence 334679999999999999999998532211 1123445554555566677
Q ss_pred eEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCcc-ccccchhhhHHHHHHHHHH---------h-cCC
Q 012085 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSF-EVGMNTAKGLTREHAQLIR---------S-FGV 405 (471)
Q Consensus 344 ~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~-e~~~~~l~~~~~e~l~ll~---------~-~~v 405 (471)
..|+||||||+.. +...+++++..+|++|+|||++.... ...+..+.....++..+.. . ...
T Consensus 206 ~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 8899999999642 33456677888999999999975210 1112223233334443332 2 244
Q ss_pred CeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 406 p~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
| +|||+||+|+... .+ +.+.+...+...+ ++||++||++++||.+++
T Consensus 286 P-~IVVlNKiDL~da-~e----l~e~l~~~l~~~g-----~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 286 P-RLVVLNKIDVPDA-RE----LAEFVRPELEARG-----WPVFEVSAASREGLRELS 332 (500)
T ss_pred C-EEEEEECccchhh-HH----HHHHHHHHHHHcC-----CeEEEEECCCCCCHHHHH
Confidence 4 9999999999732 11 2223333333333 478999999999998764
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=3.1e-16 Score=175.57 Aligned_cols=148 Identities=24% Similarity=0.304 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++|||||||+|+|++....+ ....+|+|.+.......+.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~i------------------------------v~~~pGvT~d~~~~~~~~~~~ 323 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAV------------------------------VEDTPGVTRDRVSYDAEWAGT 323 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCeeEEEEEEEEEECCE
Confidence 34679999999999999999999632211 122467777766666677788
Q ss_pred EEEEEeCCCCCC--------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.||||||+.. +...+..++..+|++|||+|+..+ +.....++..+++..++| +|+|+||+|
T Consensus 324 ~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~p-vIlV~NK~D 394 (712)
T PRK09518 324 DFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKP-VVLAVNKID 394 (712)
T ss_pred EEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 999999999763 344556678899999999999876 344556677778777777 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+.... . .+..+ ..+++. .++++||++|.||.+++.
T Consensus 395 ~~~~~-~-------~~~~~-~~lg~~----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 395 DQASE-Y-------DAAEF-WKLGLG----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred cccch-h-------hHHHH-HHcCCC----CeEEEECCCCCCchHHHH
Confidence 86321 0 11111 123442 248999999999988764
No 205
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=6.1e-16 Score=146.05 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
+-|+++|++|||||||||+|+++..+. ....++|.|..+..+.+.. .+
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------------rtSktPGrTq~iNff~~~~---~~ 72 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLA-----------------------------RTSKTPGRTQLINFFEVDD---EL 72 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCccee-----------------------------ecCCCCCccceeEEEEecC---cE
Confidence 449999999999999999999754321 2334588888888766554 38
Q ss_pred EEEeCCCC----------CC---chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 347 VVLDSPGH----------KD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 347 ~LIDTPG~----------e~---f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.|+|.||. +. +...++..-....++++|+|+.++ ....++++++++...++| ++||+|
T Consensus 73 ~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~--------~~~~D~em~~~l~~~~i~-~~vv~t 143 (200)
T COG0218 73 RLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHP--------PKDLDREMIEFLLELGIP-VIVVLT 143 (200)
T ss_pred EEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-eEEEEE
Confidence 99999992 22 233333333447889999999988 556778999999999998 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCc-cEEEEecccCCCcccc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASL-TWIPLSALENQNLVTA 462 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i-~IIpvSAktG~gI~e~ 462 (471)
|+|.+.. .........+. ..+++..+.- .++..|+.++.|++++
T Consensus 144 K~DKi~~--~~~~k~l~~v~---~~l~~~~~~~~~~~~~ss~~k~Gi~~l 188 (200)
T COG0218 144 KADKLKK--SERNKQLNKVA---EELKKPPPDDQWVVLFSSLKKKGIDEL 188 (200)
T ss_pred ccccCCh--hHHHHHHHHHH---HHhcCCCCccceEEEEecccccCHHHH
Confidence 9999853 22222222333 2233322211 2788999999998775
No 206
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=3.9e-16 Score=163.13 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-eE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 345 (471)
..|+|||.+|||||||||+|++....+. ..++.|.......+...+ ..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs-------------------------------~~p~TT~~p~~Giv~~~~~~~ 208 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVA-------------------------------DYPFTTLVPNLGVVRVDDERS 208 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccccc-------------------------------CCCCCccCcEEEEEEeCCCcE
Confidence 4599999999999999999995432111 113344433333344443 46
Q ss_pred EEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 346 l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
++|+||||+.. +...++.++..+|++|+|+|+........+..+.....++..+...+...|+|||+||+|+.
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 99999999643 34556678899999999999872100011111222222222222222223489999999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .. +.+.+..+.+..++ ...++++||++++||.+++.
T Consensus 289 ~~--~e---l~~~l~~l~~~~~~---~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 289 DE--EE---AEERAKAIVEALGW---EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred Ch--HH---HHHHHHHHHHHhCC---CCCEEEEECCCCcCHHHHHH
Confidence 32 22 22333333333332 23689999999999988643
No 207
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.67 E-value=5.2e-16 Score=142.14 Aligned_cols=151 Identities=21% Similarity=0.152 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|..|+|||||+.+++...- .. . ..+..+. . .....+......+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f--~~-------------------------~--~~~~~~~-~-~~~i~~~~~~~~l 49 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY--VQ-------------------------L--ESPEGGR-F-KKEVLVDGQSHLL 49 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCC--CC-------------------------C--CCCCccc-e-EEEEEECCEEEEE
Confidence 4799999999999999999873100 00 0 0000111 1 1122233344678
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||+|++.. .+++.+|++|+|+|.+...+ +.....++..+.... ...|+++|+||+|+.......
T Consensus 50 ~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s------f~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~ 118 (158)
T cd04103 50 LIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS------FQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV 118 (158)
T ss_pred EEEECCCCCch-----hHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc
Confidence 99999999752 34577999999999997632 333333333333322 122499999999985311111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+. .+....+.+.. ..+.|++|||++|.||.++|..
T Consensus 119 v~--~~~~~~~~~~~----~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 119 ID--DARARQLCADM----KRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred cC--HHHHHHHHHHh----CCCcEEEEecCCCCCHHHHHHH
Confidence 11 11222333222 2358899999999999998754
No 208
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.67 E-value=2.4e-16 Score=176.94 Aligned_cols=174 Identities=29% Similarity=0.360 Sum_probs=129.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (471)
..+.++|+|+|++++|||||+.+|++..+.+.... .+. .+.+|....++.+|+|+......+.+
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiTi~~~~~~~~~~ 81 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AGE-----QLALDFDEEEQARGITIKAANVSMVHE 81 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cCc-----ceecCccHHHHHhhhhhhccceEEEEE
Confidence 34678999999999999999999998777655421 111 35688889999999998776554433
Q ss_pred ---CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ---~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.+..++|+|||||.+|...+..+++.+|++|+|+|+..+ +..+++.++.++...+.| +|+++||||+.
T Consensus 82 ~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~ 152 (731)
T PRK07560 82 YEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVK-PVLFINKVDRL 152 (731)
T ss_pred ecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence 578899999999999999999999999999999999987 556788888887778887 68999999986
Q ss_pred CCC--------hhhHHHHHHHHHHHHHhcC---------CCCCCccEEEEecccCCCcc
Q 012085 419 QYS--------KDRFDSIKVQLGTFLRSCG---------FKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 419 ~~~--------~e~~eei~~~L~~~l~~~g---------~~~~~i~IIpvSAktG~gI~ 460 (471)
..+ ..++..+...+..++..+. +.+.+-.+++.||+.+.++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~ 211 (731)
T PRK07560 153 IKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAIS 211 (731)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeeccccccee
Confidence 422 1223333344444443221 22223356778999887765
No 209
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=5.5e-16 Score=163.30 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-Ce
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~ 344 (471)
...|+|||.+||||||||++|++....+.. .++.|.......+... +.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~-------------------------------ypfTTl~PnlG~v~~~~~~ 206 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIAN-------------------------------YHFTTLVPNLGVVETDDGR 206 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCcccc-------------------------------CCcceeceEEEEEEEeCCc
Confidence 346999999999999999999953322111 1233433333334444 67
Q ss_pred EEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiD 416 (471)
.++||||||... +...+++++..++++|+|||++.......+..+.....++..+... .+.| +|||+||+|
T Consensus 207 ~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~D 285 (424)
T PRK12297 207 SFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMD 285 (424)
T ss_pred eEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCC
Confidence 899999999642 3455677788899999999997431111122222222222222222 2444 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+... .+ .+..+.+.++ .+++++||++++||.+++.
T Consensus 286 L~~~-~e-------~l~~l~~~l~-----~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 286 LPEA-EE-------NLEEFKEKLG-----PKVFPISALTGQGLDELLY 320 (424)
T ss_pred CcCC-HH-------HHHHHHHHhC-----CcEEEEeCCCCCCHHHHHH
Confidence 8532 11 2222222233 3689999999999988753
No 210
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=3e-16 Score=148.50 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-e
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-Y 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~ 344 (471)
.++|+|+|++|||||||+++|++....... ..+.|+......+...+ .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~-------------------------------~~~~t~~~~~~~~~~~~~~ 89 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAED-------------------------------QLFATLDPTTRRLRLPDGR 89 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCC-------------------------------ccceeccceeEEEEecCCc
Confidence 468999999999999999999953211100 01112222222222333 3
Q ss_pred EEEEEeCCCCCCc-hh-------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEe
Q 012085 345 HVVVLDSPGHKDF-VP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVN 413 (471)
Q Consensus 345 ~l~LIDTPG~e~f-~~-------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvN 413 (471)
.++||||||+... .. .....+..+|++|+|+|++.+... .....+..++... +.| +|+|+|
T Consensus 90 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~-------~~~~~~~~~l~~~~~~~~~-viiV~N 161 (204)
T cd01878 90 EVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE-------EQIETVEKVLKELGAEDIP-MILVLN 161 (204)
T ss_pred eEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh-------hHHHHHHHHHHHcCcCCCC-EEEEEE
Confidence 8999999997331 11 112235679999999999876321 1223333444443 344 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+... .... ..+. ....+++++||++|.|+.+++.
T Consensus 162 K~Dl~~~--~~~~-------~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 162 KIDLLDD--EELE-------ERLE-----AGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred ccccCCh--HHHH-------HHhh-----cCCCceEEEEcCCCCCHHHHHH
Confidence 9999743 1111 1111 1235789999999999998753
No 211
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=4.9e-16 Score=146.70 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=109.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...+||+++|.+++|||-|+.|++...-. .....+.|+.+......++...
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~-----------------------------~~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFS-----------------------------LESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccC-----------------------------cccccceeEEEEeeceeecCcE
Confidence 34578999999999999999999832111 1111235555555556677777
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
.+.+||||+||++|......+++.|.++|+|+|.++..+ +....+ |+..|+.. +++ +++|+||+||..-
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T------fenv~r-WL~ELRdhad~niv-imLvGNK~DL~~l 134 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT------FENVER-WLKELRDHADSNIV-IMLVGNKSDLNHL 134 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHH------HHHHHH-HHHHHHhcCCCCeE-EEEeecchhhhhc
Confidence 889999999999999999999999999999999997743 332333 34444443 344 8999999999742
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... .+.-+.+.... ...|+++||+.+.|+.++|.
T Consensus 135 raV~----te~~k~~Ae~~-----~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 135 RAVP----TEDGKAFAEKE-----GLFFLETSALDATNVEKAFE 169 (222)
T ss_pred cccc----hhhhHhHHHhc-----CceEEEecccccccHHHHHH
Confidence 1111 12223333322 35889999999999999873
No 212
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.7e-16 Score=170.62 Aligned_cols=149 Identities=35% Similarity=0.470 Sum_probs=125.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.+||+|+||.++|||||..+|+...+.+.... ....+ +..+|....|+++|+|+......+.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G-------~v~~g------~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG-------EVHDG------AATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc-------cccCC------CccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 45678999999999999999999998887765421 01111 457899999999999999999999999
Q ss_pred C-eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~-~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
+ +.++|||||||.+|.....+.++.+|++|+|+|+..| ++.|+.-.++++...++| .|+++||||+...+
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~ 144 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKYGVP-RILFVNKMDRLGAD 144 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhcCCC-eEEEEECccccccC
Confidence 5 9999999999999999999999999999999999988 778999999999999999 78899999998653
Q ss_pred hhhHHHHHHHHHHHH
Q 012085 422 KDRFDSIKVQLGTFL 436 (471)
Q Consensus 422 ~e~~eei~~~L~~~l 436 (471)
+....+.+...|
T Consensus 145 ---~~~~~~~l~~~l 156 (697)
T COG0480 145 ---FYLVVEQLKERL 156 (697)
T ss_pred ---hhhhHHHHHHHh
Confidence 333444555444
No 213
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.65 E-value=9.7e-16 Score=172.08 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=103.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+++|++|+|||||+|+|++.... ....+|+|++.....+...+.
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------------------------vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-------------------------------VGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCceEeeEEEEEEcCce
Confidence 4568999999999999999999863221 112378888877777888889
Q ss_pred EEEEEeCCCCCCchhh----------hhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 345 HVVVLDSPGHKDFVPN----------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~----------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
.+.||||||+.++... ...+ ...+|++|+|+|+++.. ....+...+.+.++| +|+|+
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le----------r~l~l~~ql~e~giP-vIvVl 119 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE----------RNLYLTLQLLELGIP-CIVAL 119 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch----------hhHHHHHHHHHcCCC-EEEEE
Confidence 9999999998776421 1112 24699999999998641 112334455677887 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
||+|+.+.. .+....+.+. +.+| ++++|+||++|+|+++..
T Consensus 120 NK~Dl~~~~--~i~id~~~L~---~~LG-----~pVvpiSA~~g~GIdeL~ 160 (772)
T PRK09554 120 NMLDIAEKQ--NIRIDIDALS---ARLG-----CPVIPLVSTRGRGIEALK 160 (772)
T ss_pred Echhhhhcc--CcHHHHHHHH---HHhC-----CCEEEEEeecCCCHHHHH
Confidence 999986321 2222223333 3344 478999999999987653
No 214
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.3e-15 Score=143.02 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=72.7
Q ss_pred ecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-c-CCCeEEEEEeCCC
Q 012085 339 FDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-F-GVDQLIVAVNKMD 416 (471)
Q Consensus 339 ~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~-~vp~IIVVvNKiD 416 (471)
++.....+.||||+|++.. ....+++.+|++|+|+|++...+ +......++..++. . +. |+|+|+||+|
T Consensus 61 ~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~S------f~~~~~~w~~~i~~~~~~~-piilvgNK~D 131 (195)
T cd01873 61 VDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNS------LRNVKTMWYPEIRHFCPRV-PVILVGCKLD 131 (195)
T ss_pred eCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhH------HHHHHHHHHHHHHHhCCCC-CEEEEEEchh
Confidence 3445678999999998763 23457889999999999997632 22232223333332 2 34 4999999999
Q ss_pred CCCCChh---------------hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 417 AVQYSKD---------------RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 417 l~~~~~e---------------~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+...... ...-..++...+.+..+ ++|+++||++|+||.++|..
T Consensus 132 L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~~~V~e~F~~ 190 (195)
T cd01873 132 LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQFGVKDVFDN 190 (195)
T ss_pred ccccccchhhhcccccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCCCCHHHHHHH
Confidence 8631000 00011233444555544 47899999999999998754
No 215
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.65 E-value=7.4e-16 Score=140.60 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=88.7
Q ss_pred EEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-CeEEEEE
Q 012085 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (471)
Q Consensus 271 VVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~l~LI 349 (471)
|+|.+|||||||+++|++....+ ....+.|+......+... +..+.||
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------------------------------ANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccc-------------------------------cCCCceeecCcceEEEcCCCCeEEEE
Confidence 58999999999999999632200 011223333222234445 7889999
Q ss_pred eCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccc---cccchhhhHHHHHHHHHH------hcCCCeEEEEEe
Q 012085 350 DSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFE---VGMNTAKGLTREHAQLIR------SFGVDQLIVAVN 413 (471)
Q Consensus 350 DTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e---~~~~~l~~~~~e~l~ll~------~~~vp~IIVVvN 413 (471)
||||+.. +...+...+..+|++++|+|+...... ..+........+...... ..+.| +++|+|
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~N 128 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLN 128 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEE
Confidence 9999632 223445667889999999999865100 011111111122211111 12445 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+... ....... ..... . .....++++||++|.|+.++++
T Consensus 129 K~Dl~~~--~~~~~~~--~~~~~--~---~~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 129 KIDLDDA--EELEEEL--VRELA--L---EEGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred chhcCch--hHHHHHH--HHHHh--c---CCCCCEEEEehhhhcCHHHHHH
Confidence 9999743 2211111 11111 1 1235789999999999998764
No 216
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.64 E-value=3.7e-16 Score=157.71 Aligned_cols=225 Identities=25% Similarity=0.339 Sum_probs=160.9
Q ss_pred CCCCCCccCcchhhhhhccccccccCCCcccccccccCcCCCCcccccCCCCc-CCcccceEEEEEcCCCCCchhHhHHH
Q 012085 208 DGTESSSHTGNLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKK-GDRMTQLNLAIVGHVDSGKSTLSGRL 286 (471)
Q Consensus 208 ~~~~~~~~~~~l~~sl~~l~~~~~~~~s~~~~~~k~~~~~~~~~e~~~~~~~~-~~~~~~i~IaVVG~~gvGKSTLInrL 286 (471)
++.++...+.++.++...+...+..+....+.++.+... .-..+.|+..+.- ....-..+|+|||.+++|||||+..|
T Consensus 75 dg~~sGLseed~eas~at~~~~ae~I~Adv~klreR~~~-gG~~~~~liRk~~~~~DF~E~RVAVVGNVDAGKSTLLGVL 153 (641)
T KOG0463|consen 75 DGPKSGLSEEDLEASAATQLKIAEKIPADVTKLRERKQT-GGGTEVWLIRKPPTEKDFIEARVAVVGNVDAGKSTLLGVL 153 (641)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhCccHhhhhhhHHhc-CCCeeEEEEeCCCCCccceeEEEEEEecccCCcceeEeee
Confidence 444445555567778777776666665555555544443 3346677655443 44567899999999999999999999
Q ss_pred hhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE--Ee-----------------------cC
Q 012085 287 LFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--YF-----------------------DS 341 (471)
Q Consensus 287 lg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~--~~-----------------------~~ 341 (471)
++-.- ..+++ ...+.+.++..+.+.|.|..+..- .| +.
T Consensus 154 THgeL---------------DnGRG--~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~ 216 (641)
T KOG0463|consen 154 THGEL---------------DNGRG--AARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICED 216 (641)
T ss_pred eeccc---------------ccCcc--HHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccc
Confidence 86321 11111 122334444555555554332211 11 11
Q ss_pred CCeEEEEEeCCCCCCchhhhhhcccc--CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
....++|||.+||+.|...+..++.. +|..+|+|.++.+ +...++||+.++..+.+| ++||++|||++
T Consensus 217 saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG--------IiGmTKEHLgLALaL~VP-VfvVVTKIDMC- 286 (641)
T KOG0463|consen 217 SAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG--------IIGMTKEHLGLALALHVP-VFVVVTKIDMC- 286 (641)
T ss_pred cceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc--------ceeccHHhhhhhhhhcCc-EEEEEEeeccC-
Confidence 23568999999999999999888876 9999999999988 678999999999999998 99999999999
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCC---------------------CCccEEEEecccCCCccc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKD---------------------ASLTWIPLSALENQNLVT 461 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~---------------------~~i~IIpvSAktG~gI~e 461 (471)
....+++..+.|.++++..|++. .-++||.+|-.+|+|+.-
T Consensus 287 -PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L 348 (641)
T KOG0463|consen 287 -PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL 348 (641)
T ss_pred -cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH
Confidence 45778888999999998876643 235899999999999853
No 217
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=2.6e-16 Score=144.41 Aligned_cols=134 Identities=24% Similarity=0.269 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|++|+|||||+|+|.+.... .+ .+... .+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--------------------------------~~---~~~~v---~~~~~----~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--------------------------------AR---KTQAV---EFNDK----G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--------------------------------Cc---cceEE---EECCC----C
Confidence 6999999999999999998852110 00 11111 11111 2
Q ss_pred EEeCCCCC----CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 348 VLDSPGHK----DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 348 LIDTPG~e----~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
+|||||+. ++...+...+..+|++|+|+|++.+... ...+...+ ..+.| +++++||+|+....
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~--------~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~-- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR--------LPAGLLDI--GVSKR-QIAVISKTDMPDAD-- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc--------cCHHHHhc--cCCCC-eEEEEEccccCccc--
Confidence 69999963 3444555668899999999999976321 11222221 12444 99999999986422
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. ..+..++...++. .+++++||++|+||.+++.
T Consensus 108 -~----~~~~~~~~~~~~~---~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 108 -V----AATRKLLLETGFE---EPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred -H----HHHHHHHHHcCCC---CCEEEEECCCccCHHHHHH
Confidence 1 2344455555542 5899999999999998764
No 218
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.64 E-value=6.8e-16 Score=160.97 Aligned_cols=143 Identities=22% Similarity=0.209 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
-++|+|+|.||||||||+|+|+++..++.. ..+|.|.++....+...++.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVT------------------------------dI~GTTRDviee~i~i~G~p 266 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVT------------------------------DIAGTTRDVIEEDINLNGIP 266 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEec------------------------------CCCCCccceEEEEEEECCEE
Confidence 478999999999999999999976555544 35899999999999999999
Q ss_pred EEEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 346 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 346 l~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.|+||+|.++- .......+..||.+|||+|++.+. .......+. +...+.| +++|+||+|+
T Consensus 267 v~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~--------~~~d~~~~~-~~~~~~~-~i~v~NK~DL 336 (454)
T COG0486 267 VRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPL--------DKEDLALIE-LLPKKKP-IIVVLNKADL 336 (454)
T ss_pred EEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------chhhHHHHH-hcccCCC-EEEEEechhc
Confidence 999999996642 233456678899999999999762 233333444 2233444 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
..... ...+ +. ....+++.+||++|+||..+
T Consensus 337 ~~~~~------~~~~-~~-------~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 337 VSKIE------LESE-KL-------ANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred ccccc------cchh-hc-------cCCCceEEEEecCccCHHHH
Confidence 85421 0111 11 12336899999999999865
No 219
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=1.3e-15 Score=157.40 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-CCe
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KNY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~ 344 (471)
.++|+|+|.+|||||||+|+|++....+. ...+.|.+.....+.. .+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~-------------------------------~~~~tT~d~~~~~i~~~~~~ 237 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAA-------------------------------DQLFATLDPTTRRLDLPDGG 237 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeec-------------------------------cCCccccCCEEEEEEeCCCc
Confidence 36899999999999999999996421110 0122233222222333 356
Q ss_pred EEEEEeCCCCCC-c-------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEe
Q 012085 345 HVVVLDSPGHKD-F-------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVN 413 (471)
Q Consensus 345 ~l~LIDTPG~e~-f-------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvN 413 (471)
.+.||||||+.+ . ...+...+..+|++|+|+|++.+... .+...+..++... +.| +|+|+|
T Consensus 238 ~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~-------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 238 EVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE-------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH-------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 899999999722 1 12233457789999999999976321 1222233444443 344 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+... ..+. ... . + ..++|++||++|.||.+++.
T Consensus 310 K~Dl~~~--~~v~-------~~~-~-~----~~~~i~iSAktg~GI~eL~~ 345 (351)
T TIGR03156 310 KIDLLDE--PRIE-------RLE-E-G----YPEAVFVSAKTGEGLDLLLE 345 (351)
T ss_pred eecCCCh--HhHH-------HHH-h-C----CCCEEEEEccCCCCHHHHHH
Confidence 9999742 1111 111 1 1 13579999999999988653
No 220
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.3e-15 Score=152.57 Aligned_cols=162 Identities=30% Similarity=0.470 Sum_probs=130.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-----
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD----- 340 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~----- 340 (471)
.+||+|+|+.++|||||.++|... .-....|..+...++|+|.++.+..+.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~------------------------~STaAFDk~pqS~eRgiTLDLGFS~~~v~~pa 62 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL------------------------GSTAAFDKHPQSTERGITLDLGFSTMTVLSPA 62 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh------------------------ccchhhccCCcccccceeEeecceeeeccccc
Confidence 478999999999999999999721 112345677788889999988765542
Q ss_pred ----CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 341 ----SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 341 ----~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+..+++|+|+|||..+....+.+....|..|+|||+..| .+.|+.|++-+...+-.+ .|||+||+|
T Consensus 63 rLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG--------~QtQtAEcLiig~~~c~k-lvvvinkid 133 (522)
T KOG0461|consen 63 RLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG--------KQTQTAECLIIGELLCKK-LVVVINKID 133 (522)
T ss_pred ccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc--------cccccchhhhhhhhhccc-eEEEEeccc
Confidence 2457889999999999999999999999999999999988 678888988777666555 899999999
Q ss_pred CCCCC--hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC----CCccc
Q 012085 417 AVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN----QNLVT 461 (471)
Q Consensus 417 l~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG----~gI~e 461 (471)
..... ...+++....+++-|+..++.. +.+|+++||+.| ++|.+
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~g-~~PI~~vsa~~G~~~~~~i~e 183 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFDG-NSPIVEVSAADGYFKEEMIQE 183 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcCC-CCceeEEecCCCccchhHHHH
Confidence 87532 2346777888888898888864 589999999999 55544
No 221
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.63 E-value=4e-15 Score=139.39 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+|+|+|..|+|||||+++|+...- .. ......+... .....+......+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~--~~---------------------------~~~~t~~~~~-~~~~~~~~~~~~l 51 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PE---------------------------EYHPTVFENY-VTDCRVDGKPVQL 51 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--Cc---------------------------ccCCcccceE-EEEEEECCEEEEE
Confidence 4799999999999999999973110 00 0000000000 1111233334578
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCCh---
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYSK--- 422 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~~--- 422 (471)
.+|||||++.+.......++.+|++|+|+|.+... .+......++..++. ....|+|+|+||+|+.....
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~------s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~ 125 (187)
T cd04129 52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD------SLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKE 125 (187)
T ss_pred EEEECCCChhccccchhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccc
Confidence 99999999887766556778899999999998652 233333333333332 22234999999999854211
Q ss_pred ----hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 ----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 ----e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++. ..+....+.+.++. .++|++||++|.||.++|..
T Consensus 126 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 126 EYRTQRFV-PIQQGKRVAKEIGA----KKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred ccccCCcC-CHHHHHHHHHHhCC----cEEEEccCCCCCCHHHHHHH
Confidence 0100 01223333344432 36899999999999998754
No 222
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.63 E-value=1e-15 Score=163.00 Aligned_cols=141 Identities=22% Similarity=0.203 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|+|||||+|+|++....+. ...+|.|.+.....+...+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~~ 264 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGIP 264 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCeE
Confidence 46899999999999999999995322111 112455555555556667788
Q ss_pred EEEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 346 VVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 346 l~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.||||||+.++.. .....+..+|++|+|+|++.+.+.. ....+.. ..+.| +|+|+||+|+
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~--------~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEE--------DDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChh--------HHHHHHh--cCCCC-cEEEEEhhhc
Confidence 99999999876432 2345678899999999998763211 1111111 23444 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... ... .. ...+++++||++|.||.+++.
T Consensus 334 ~~~~--~~~----------~~-----~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 334 TGEI--DLE----------EE-----NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred cccc--hhh----------hc-----cCCceEEEEeeCCCCHHHHHH
Confidence 7421 110 11 234689999999999987653
No 223
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.63 E-value=5.3e-15 Score=141.53 Aligned_cols=155 Identities=21% Similarity=0.186 Sum_probs=98.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|+|||||+++++.... ......+.+..+..........
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~ 56 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEF-----------------------------EKKYIPTLGVEVHPLKFYTNCG 56 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCccceEEEEEEEEECCe
Confidence 44568999999999999999988762110 0011112233333333333456
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
...+.+|||+|++.|...+..++..++++|+|+|.+...+ +.....+...+.......|+++|+||+|+....
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~- 129 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT------YKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ- 129 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH------HHHHHHHHHHHHHhCCCCCEEEEEECccCcccc-
Confidence 6889999999999998888888889999999999996632 222222222222222223489999999986321
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
... + ...+.... .+.++++||++|.|+.+.+
T Consensus 130 ~~~-~----~~~~~~~~-----~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 130 VKA-R----QITFHRKK-----NLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred CCH-H----HHHHHHHc-----CCEEEEEeCCCCCCHHHHH
Confidence 111 1 11233322 3478999999999998765
No 224
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.62 E-value=3.3e-15 Score=131.34 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=92.4
Q ss_pred EEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-CeEEEEE
Q 012085 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHVVVL 349 (471)
Q Consensus 271 VVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~l~LI 349 (471)
|+|.+|+|||||+++|++...... ....+.+.......+... ...+.||
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV------------------------------SPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc------------------------------CCCCCcEECCeEEEEEecCCCcEEEE
Confidence 589999999999999985422210 011222322222223222 6789999
Q ss_pred eCCCCCCchh-------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 350 DSPGHKDFVP-------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 350 DTPG~e~f~~-------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
||||+..+.. .+...++.+|++++|+|+..... .....+.......+.| +++|+||+|+...
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~--------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~-- 119 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD--------EEEEKLLELLRERGKP-VLLVLNKIDLLPE-- 119 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC--------HHHHHHHHHHHhcCCe-EEEEEEccccCCh--
Confidence 9999776543 33457788999999999997621 1222234444455666 9999999999843
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
......... .... ......++++++||+++.|+.++++
T Consensus 120 ~~~~~~~~~-~~~~---~~~~~~~~~~~~sa~~~~~v~~l~~ 157 (163)
T cd00880 120 EEEEELLEL-RLLI---LLLLLGLPVIAVSALTGEGIDELRE 157 (163)
T ss_pred hhHHHHHHH-HHhh---cccccCCceEEEeeeccCCHHHHHH
Confidence 222211110 1111 1122456899999999999987643
No 225
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.2e-15 Score=137.34 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=106.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++++|+|..|+|||.|+.+++...- ......+-|+.+......+..+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kf-----------------------------kDdssHTiGveFgSrIinVGgK~vK 59 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKF-----------------------------KDDSSHTIGVEFGSRIVNVGGKTVK 59 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhh-----------------------------cccccceeeeeecceeeeecCcEEE
Confidence 46899999999999999999983111 1112234455554445555667789
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCe--EEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ--LIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~--IIVVvNKiDl~~~~~e 423 (471)
++||||+||++|+....++++.|.+++||+|++.. +.+...+.|+- -++.+..|. +|++.||-||-...+.
T Consensus 60 LQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr------dsfnaLtnWL~-DaR~lAs~nIvviL~GnKkDL~~~R~V 132 (214)
T KOG0086|consen 60 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR------DSFNALTNWLT-DARTLASPNIVVILCGNKKDLDPEREV 132 (214)
T ss_pred EEEeecccHHHHHHHHHHHhccccceEEEEeccch------hhHHHHHHHHH-HHHhhCCCcEEEEEeCChhhcChhhhh
Confidence 99999999999999999999999999999999965 33444444433 233333332 5777899999643222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
. ..+...+..+ ..+.+.++||++|+|+.|+|
T Consensus 133 t----flEAs~FaqE-----nel~flETSa~TGeNVEEaF 163 (214)
T KOG0086|consen 133 T----FLEASRFAQE-----NELMFLETSALTGENVEEAF 163 (214)
T ss_pred h----HHHHHhhhcc-----cceeeeeecccccccHHHHH
Confidence 2 2233344332 33578999999999999986
No 226
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=4e-15 Score=157.98 Aligned_cols=143 Identities=25% Similarity=0.233 Sum_probs=96.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++....+ ....+|.|.+.....+...+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai------------------------------vs~~pgtTrd~~~~~i~~~g~ 251 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI------------------------------VSDIKGTTRDVVEGDFELNGI 251 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcEEEEEEEEEEECCE
Confidence 34789999999999999999999532211 112356676666666677788
Q ss_pred EEEEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.||||||+.++.. ....+++.+|++|+|+|++.+.+. ... ++..+...++| +|+|+||+|
T Consensus 252 ~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~--------~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 252 LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTK--------DDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCCh--------hHH-HHHHHhhCCCC-EEEEEECcc
Confidence 999999999865432 234677889999999999876321 111 33334444665 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+... .. ..+.+.++ .+++++||++ .||.+.+
T Consensus 322 l~~~---~~-------~~~~~~~~-----~~~~~vSak~-~gI~~~~ 352 (442)
T TIGR00450 322 LKIN---SL-------EFFVSSKV-----LNSSNLSAKQ-LKIKALV 352 (442)
T ss_pred CCCc---ch-------hhhhhhcC-----CceEEEEEec-CCHHHHH
Confidence 9642 11 11122222 3679999998 5776654
No 227
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.3e-15 Score=156.78 Aligned_cols=151 Identities=32% Similarity=0.440 Sum_probs=122.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++.+|+-||++|||||...|+-.-+++......+ ++.+- .....|....|+++|+++......|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~-~~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSG-KHAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCC-cccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 4567799999999999999999986655554332111 11111 12346778889999999999999999999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC-h
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS-K 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~-~ 422 (471)
..++|+|||||++|...+.+.+..+|.+|+|||+..| +..+++.+.+.++..++| ||=++||+|+.... .
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--------iE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ 151 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------IEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPL 151 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccC--------ccHHHHHHHHHHhhcCCc-eEEEeeccccccCChH
Confidence 9999999999999999999999999999999999998 789999999999999999 99999999997532 2
Q ss_pred hhHHHHHHHH
Q 012085 423 DRFDSIKVQL 432 (471)
Q Consensus 423 e~~eei~~~L 432 (471)
+.++++.+.|
T Consensus 152 ELLdEiE~~L 161 (528)
T COG4108 152 ELLDEIEEEL 161 (528)
T ss_pred HHHHHHHHHh
Confidence 3344444443
No 228
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.61 E-value=5.4e-15 Score=134.57 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|.|+|..|+||||++++|.+.... ...+ |.......+..++
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~------------------------------~i~p----t~gf~Iktl~~~~ 59 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTD------------------------------TISP----TLGFQIKTLEYKG 59 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCcc------------------------------ccCC----ccceeeEEEEecc
Confidence 34789999999999999999999953211 1111 2333344566788
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
+.++|||..||..++..+..|+...|++|||+|...... ++.......+.+.--+..|.| ++|+.||.|+.+.-
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l-- 133 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---MQECKQELTELLVEERLAGAP-LLVLANKQDLPGAL-- 133 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---HHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCcccc--
Confidence 999999999999999999999999999999999986532 222222222333322334555 89999999998431
Q ss_pred hHHHHH--HHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 424 RFDSIK--VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 424 ~~eei~--~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+++. -.|..+++. ..++++-|||.+|+++.+.+
T Consensus 134 ~~~~i~~~~~L~~l~ks-----~~~~l~~cs~~tge~l~~gi 170 (185)
T KOG0073|consen 134 SLEEISKALDLEELAKS-----HHWRLVKCSAVTGEDLLEGI 170 (185)
T ss_pred CHHHHHHhhCHHHhccc-----cCceEEEEeccccccHHHHH
Confidence 122222 233333322 45789999999999987643
No 229
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=1.6e-14 Score=129.46 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=94.8
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEE
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~L 348 (471)
|+|+|.+|+|||||++.|++..... ......+.+......... ..+++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~---~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLA-----------------------------RTSKTPGKTQLINFFNVN---DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcee-----------------------------eecCCCCcceeEEEEEcc---CeEEE
Confidence 8999999999999999998411110 011122333333332222 28999
Q ss_pred EeCCCCCC----------chhhhhhcc---ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 349 LDSPGHKD----------FVPNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 349 IDTPG~e~----------f~~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
|||||+.. +...+..++ ..++++++|+|.... ......+.+.++...+.| +++|+||+
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~ 120 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKA 120 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEch
Confidence 99999543 222222333 346789999999865 223445556667777766 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+.. ..........+...++... ...+++++||+++.|+.++..
T Consensus 121 D~~~--~~~~~~~~~~~~~~l~~~~---~~~~~~~~Sa~~~~~~~~l~~ 164 (170)
T cd01876 121 DKLK--KSELAKALKEIKKELKLFE---IDPPIILFSSLKGQGIDELRA 164 (170)
T ss_pred hcCC--hHHHHHHHHHHHHHHHhcc---CCCceEEEecCCCCCHHHHHH
Confidence 9973 3333344445555544211 335789999999999988643
No 230
>PRK13351 elongation factor G; Reviewed
Probab=99.61 E-value=4.5e-15 Score=165.74 Aligned_cols=148 Identities=30% Similarity=0.459 Sum_probs=114.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.+||+|+|+.|+|||||+++|+...+.+..... . ..+ .+.++....++.+++|+......+.+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~--------v-~~~----~~~~d~~~~e~~r~~ti~~~~~~~~~~~ 72 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE--------V-EDG----TTVTDWMPQEQERGITIESAATSCDWDN 72 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCcccccc--------c-cCC----cccCCCCHHHHhcCCCcccceEEEEECC
Confidence 35689999999999999999999976654432210 0 001 2345666778889999988888888899
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +++|+||+|+...+
T Consensus 73 ~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~-- 141 (687)
T PRK13351 73 HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIP-RLIFINKMDRVGAD-- 141 (687)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCC--
Confidence 9999999999999999999999999999999999977 345666777778778887 89999999998543
Q ss_pred hHHHHHHHHHHHH
Q 012085 424 RFDSIKVQLGTFL 436 (471)
Q Consensus 424 ~~eei~~~L~~~l 436 (471)
+..+.+.++..+
T Consensus 142 -~~~~~~~i~~~l 153 (687)
T PRK13351 142 -LFKVLEDIEERF 153 (687)
T ss_pred -HHHHHHHHHHHH
Confidence 344455555444
No 231
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=2.1e-14 Score=137.39 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-----C
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-----S 341 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-----~ 341 (471)
+||+++|..+||||||+++|++..-. .....+.|..+......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~-----------------------------~~~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL-----------------------------GRPSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCcceeeeEEEEEEEEcCCCCCC
Confidence 47999999999999999999842100 0111222333333333332 2
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-------------------
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------------------- 402 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------------------- 402 (471)
....+.||||+|+++|...+..+++.+|++|+|+|.+...+ +.....|+.++.+.
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S------f~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~ 125 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS------SQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQF 125 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH------HHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 34679999999999999988899999999999999997732 33333333333321
Q ss_pred --cCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 403 --FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 403 --~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+ |+|||+||+|+.......-+........+.++++. +.+.+++..+..+....
T Consensus 126 ~~~~~-PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~-----~~i~~~c~~~~~~~~~~ 182 (202)
T cd04102 126 GGNQI-PLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA-----EEINLNCTNGRLLAAGS 182 (202)
T ss_pred CCCCc-eEEEEEECccchhhcccchHHHhhHhhhHHHhcCC-----ceEEEecCCcccccCCC
Confidence 134 49999999999743211122222333344444554 45888888877665543
No 232
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.60 E-value=2e-15 Score=135.27 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=107.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhcccccccccc--ccceEEEEEEEEecCCCe
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER--ERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~--~~GiTi~~~~~~~~~~~~ 344 (471)
.+++|+|.+|+|||+|+-++... .+.... +.|+.+.+....+.....
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-------------------------------tFs~sYitTiGvDfkirTv~i~G~~V 57 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-------------------------------TFSGSYITTIGVDFKIRTVDINGDRV 57 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-------------------------------ccccceEEEeeeeEEEEEeecCCcEE
Confidence 46789999999999999998721 111122 234444444455566678
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.++||||+|+++|...+..+++..+++++|+|++.+++ +....+|+.++-.....-|-|+|+||.|..+...
T Consensus 58 kLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES------F~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv-- 129 (198)
T KOG0079|consen 58 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES------FNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRV-- 129 (198)
T ss_pred EEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhh------hHhHHHHHHHHHhcCccccceecccCCCCcccee--
Confidence 89999999999999999999999999999999998854 3333444433333332223689999999874321
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
-..+..+.+....| +.+|++||+...|+...|.
T Consensus 130 --V~t~dAr~~A~~mg-----ie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 130 --VDTEDARAFALQMG-----IELFETSAKENENVEAMFH 162 (198)
T ss_pred --eehHHHHHHHHhcC-----chheehhhhhcccchHHHH
Confidence 12345556655555 4779999999999987663
No 233
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=2.2e-15 Score=159.14 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=89.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-eE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 345 (471)
++|+|+|.+|||||||+|+|++....+.. ..+.|.+.....+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~-------------------------------~~~tTld~~~~~i~l~~~~~ 246 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD-------------------------------QLFATLDPTLRRIDVADVGE 246 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc-------------------------------CCCCCcCCceEEEEeCCCCe
Confidence 57999999999999999999963322111 12233332222233333 37
Q ss_pred EEEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 346 VVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 346 l~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.||||||+.+. ...+...+..+|++|+|+|++.+.++..+ .....++..+...++| +|+|+||+|+
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l----~~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI----EAVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH----HHHHHHHHHhccCCCC-EEEEEEcccC
Confidence 899999997432 22234567889999999999976321111 0112223323223455 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....... +... ..+. ..++++||++|.||.+++.
T Consensus 322 ~~~~~~~-------~~~~--~~~~----~~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 322 LDDFEPR-------IDRD--EENK----PIRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred CCchhHH-------HHHH--hcCC----CceEEEeCCCCCCHHHHHH
Confidence 7421111 1111 1121 1258999999999988754
No 234
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.1e-15 Score=133.84 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=107.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
..+|.|+|...+|||+|+.+.++..- . ...-.+-|+.+.....+-......
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSF----------------------t-------~afvsTvGidFKvKTvyr~~kRik 71 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSF----------------------T-------SAFVSTVGIDFKVKTVYRSDKRIK 71 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccc----------------------c-------cceeeeeeeeEEEeEeeecccEEE
Confidence 35899999999999999999984211 0 011123444444444444445688
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~~ 422 (471)
++||||+|++++...+..++++++++||++|.++.++.+ .+ ..+.-++. ..+.+ +|+|.||||+-....
T Consensus 72 lQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~---sv----qdw~tqIktysw~naq-vilvgnKCDmd~eRv 143 (193)
T KOG0093|consen 72 LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFN---SV----QDWITQIKTYSWDNAQ-VILVGNKCDMDSERV 143 (193)
T ss_pred EEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHH---HH----HHHHHHheeeeccCce-EEEEecccCCcccee
Confidence 999999999999999999999999999999999764322 22 22222222 23445 999999999964322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .+..+.+..++|+ .||++||+.+.|+..+|.
T Consensus 144 is----~e~g~~l~~~LGf-----efFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 144 IS----HERGRQLADQLGF-----EFFETSAKENINVKQVFE 176 (193)
T ss_pred ee----HHHHHHHHHHhCh-----HHhhhcccccccHHHHHH
Confidence 21 3445556667776 679999999999987763
No 235
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.58 E-value=1.4e-14 Score=125.35 Aligned_cols=150 Identities=19% Similarity=0.136 Sum_probs=92.7
Q ss_pred EEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEe
Q 012085 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (471)
Q Consensus 271 VVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LID 350 (471)
|+|++|+|||||+++|++........ . ...................+.|||
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~----------------------------~-~t~~~~~~~~~~~~~~~~~~~l~D 51 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY----------------------------E-TTIIDFYSKTIEVDGKKVKLQIWD 51 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc----------------------------c-cchhheeeEEEEECCEEEEEEEEe
Confidence 58999999999999999643310000 0 000111111112223457899999
Q ss_pred CCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHH---HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHH
Q 012085 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE---HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDS 427 (471)
Q Consensus 351 TPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e---~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ee 427 (471)
+||+..+.......++.+|++|+|+|+..+.. ......+ ........++| +++|+||+|+..........
T Consensus 52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~ 124 (157)
T cd00882 52 TAGQERFRSLRRLYYRGADGIILVYDVTDRES------FENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE 124 (157)
T ss_pred cCChHHHHhHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH
Confidence 99998888887888899999999999997621 1112221 22222333445 99999999997542221111
Q ss_pred HHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 428 IKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 428 i~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....... ...++++++||+++.|+.+++.
T Consensus 125 ----~~~~~~~----~~~~~~~~~s~~~~~~i~~~~~ 153 (157)
T cd00882 125 ----LAEQLAK----ELGVPYFETSAKTGENVEELFE 153 (157)
T ss_pred ----HHHHHHh----hcCCcEEEEecCCCCChHHHHH
Confidence 1111111 1346889999999999987653
No 236
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=6e-15 Score=149.02 Aligned_cols=220 Identities=22% Similarity=0.296 Sum_probs=158.3
Q ss_pred CccCcchhhhhhccccccccCCCcccccc-cccCcC----CCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHh
Q 012085 213 SSHTGNLTSNMKNMSSTAKSGNSTNVSAR-KTNSHT----QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLL 287 (471)
Q Consensus 213 ~~~~~~l~~sl~~l~~~~~~~~s~~~~~~-k~~~~~----~~~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLl 287 (471)
.....++.++|..|+.++.....+-.-++ +..... .-..|.+..+-+..++.-.++++|+|..++|||||+..|+
T Consensus 109 GL~deemnaSL~TL~~MA~~lGAs~~vLrek~v~~~~~~~R~v~EVLVRKvPd~QqfievRvAVlGg~D~GKSTLlGVLT 188 (591)
T KOG1143|consen 109 GLTDEEMNASLRTLRTMAQALGASMVVLREKDVTVKGSSRRTVVEVLVRKVPDSQQFIEVRVAVLGGCDVGKSTLLGVLT 188 (591)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCceEEEEeeeeeccCCCcchhhhhhhhhCCCcccceEEEEEEecCcccCcceeeeeee
Confidence 34444589999999998876544322222 322222 1123444455566677778999999999999999999997
Q ss_pred hhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe--c-------------------CCCeEE
Q 012085 288 FLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--D-------------------SKNYHV 346 (471)
Q Consensus 288 g~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~--~-------------------~~~~~l 346 (471)
.. ..+.+.-+....+.++..+...|.|..+....+ + .....+
T Consensus 189 Qg-----------------eLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlv 251 (591)
T KOG1143|consen 189 QG-----------------ELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLV 251 (591)
T ss_pred cc-----------------cccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceE
Confidence 21 111222222344556666666666654333222 1 123578
Q ss_pred EEEeCCCCCCchhhhhhcccc--CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
+|||.+||..|.+.++.++.. +|+++||+.+..| +...++||+.++..+++| ++|+++|||++ ...-
T Consensus 252 TfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--------i~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~--~~~~ 320 (591)
T KOG1143|consen 252 TFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--------ITWTTREHLGLIAALNIP-FFVLVTKMDLV--DRQG 320 (591)
T ss_pred EEeecccchhhheeeeeecccCCCceEEEEEEcCCC--------CccccHHHHHHHHHhCCC-eEEEEEeeccc--cchh
Confidence 999999999999999999887 8999999999998 667899999999999999 99999999998 4556
Q ss_pred HHHHHHHHHHHHHhcCCCC---------------------CCccEEEEecccCCCcc
Q 012085 425 FDSIKVQLGTFLRSCGFKD---------------------ASLTWIPLSALENQNLV 460 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~---------------------~~i~IIpvSAktG~gI~ 460 (471)
++.+.+++..++...|+.. .-+|||.+|..+|+|+.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ 377 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR 377 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence 7778888888888777643 23588999999999875
No 237
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.58 E-value=8.4e-15 Score=148.58 Aligned_cols=214 Identities=24% Similarity=0.361 Sum_probs=157.8
Q ss_pred chhhhhhccccccccCCCcccccccccCcCCCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhcccccccc
Q 012085 218 NLTSNMKNMSSTAKSGNSTNVSARKTNSHTQYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ 297 (471)
Q Consensus 218 ~l~~sl~~l~~~~~~~~s~~~~~~k~~~~~~~~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~ 297 (471)
.+.++++.|+..+...+..-..++...-...+..+.... .........+.|+++|+.++|||||+..|+-
T Consensus 70 ~l~esievL~~la~evgA~i~~v~~~eg~~g~Vaev~vr-r~~~~~~~hv~Vg~aGhVdhGKSTlvG~Lvt--------- 139 (527)
T COG5258 70 KLVESIEVLRELAREVGASIYIVRVHEGTDGYVAEVLVR-RKTEEAPEHVLVGVAGHVDHGKSTLVGVLVT--------- 139 (527)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEEEeccCcEEEEEEEE-ecccCCCceEEEEEeccccCCcceEEEEEEe---------
Confidence 389999999888877665444444444444555554443 2233345678999999999999999999971
Q ss_pred chhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-----------------------CCeEEEEEeCCCC
Q 012085 298 MHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-----------------------KNYHVVVLDSPGH 354 (471)
Q Consensus 298 v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-----------------------~~~~l~LIDTPG~ 354 (471)
+...+++ -....+++....+..+|.+.++....+-+ .+..+.|+||.||
T Consensus 140 ------G~~DDG~--G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGH 211 (527)
T COG5258 140 ------GRLDDGD--GATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGH 211 (527)
T ss_pred ------cCCCCCC--cchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCc
Confidence 1122222 22345566667777777776554443321 2356889999999
Q ss_pred CCchhhhhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHH
Q 012085 355 KDFVPNMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (471)
Q Consensus 355 e~f~~~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L 432 (471)
+.+...+++++- ..|..+||+.+..+ .+..++||+.++..++.| +|||++|+|+. ..++++.+.+.+
T Consensus 212 EpwLrTtirGL~gqk~dYglLvVaAddG--------~~~~tkEHLgi~~a~~lP-viVvvTK~D~~--~ddr~~~v~~ei 280 (527)
T COG5258 212 EPWLRTTIRGLLGQKVDYGLLVVAADDG--------VTKMTKEHLGIALAMELP-VIVVVTKIDMV--PDDRFQGVVEEI 280 (527)
T ss_pred cHHHHHHHHHHhccccceEEEEEEccCC--------cchhhhHhhhhhhhhcCC-EEEEEEecccC--cHHHHHHHHHHH
Confidence 999999999874 49999999999988 678999999999999998 99999999998 667888888888
Q ss_pred HHHHHhcCCCC--------------------CCccEEEEecccCCCcc
Q 012085 433 GTFLRSCGFKD--------------------ASLTWIPLSALENQNLV 460 (471)
Q Consensus 433 ~~~l~~~g~~~--------------------~~i~IIpvSAktG~gI~ 460 (471)
..+|+..+--+ --+|||.+|+.+|+|++
T Consensus 281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld 328 (527)
T COG5258 281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD 328 (527)
T ss_pred HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH
Confidence 88887643221 13589999999999986
No 238
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.57 E-value=1.1e-14 Score=163.19 Aligned_cols=132 Identities=33% Similarity=0.466 Sum_probs=105.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEE----e
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY----F 339 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~----~ 339 (471)
...+||+|+|+.++|||||+++|+...+.+... ..+. ...++....++.+|+|+...... +
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~----------~~~~-----~~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 81 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE----------LAGQ-----QLYLDFDEQEQERGITINAANVSMVHEY 81 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh----------cCCc-----eeecCCCHHHHhhcchhhcccceeEEee
Confidence 356899999999999999999999776655331 1111 24567777888888988655433 5
Q ss_pred cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 340 ~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
++.++.++|||||||.+|...+..+++.+|++|+|+|+..+ +..++..++..+...++| +|+|+||+|+..
T Consensus 82 ~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~ 152 (720)
T TIGR00490 82 EGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVK-PVLFINKVDRLI 152 (720)
T ss_pred cCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCC-EEEEEEChhccc
Confidence 67789999999999999999999999999999999999977 455677777777777887 689999999974
No 239
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.56 E-value=3.3e-15 Score=146.08 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=139.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhcccccc--------ccchhhhHHHhhcCCCccchhccccccccccccceEEEE
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQ--------KQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 334 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~--------~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~ 334 (471)
.++++.|+|+|..|+|||||+.||..+...... +.+......++++-+.+..|...|.+.+..+..|+...+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 456677999999999999999999887654332 134445556777778888899999999999999988765
Q ss_pred EEEEecC-----------CCeEEEEEeCCCCCCchhhhhhcc--------ccCCEEEEEEeCCCCccccccchhhhHHHH
Q 012085 335 AVAYFDS-----------KNYHVVVLDSPGHKDFVPNMISGA--------TQSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 335 ~~~~~~~-----------~~~~l~LIDTPG~e~f~~~~~~~l--------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (471)
..+...+ ....++|||||||.+...+..++. ...-+++||+|..+. .+...+......
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs---~~p~tFMSNMlY 172 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRS---TSPTTFMSNMLY 172 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcC---CCchhHHHHHHH
Confidence 5433222 346799999999877555543332 236688999999865 344557778888
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcC-----CC--------------CCCccEEEEecccC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG-----FK--------------DASLTWIPLSALEN 456 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g-----~~--------------~~~i~IIpvSAktG 456 (471)
...++....+| +|+|+||+|+.+. +...++...+..+-..+. +- -.++..+.|||.+|
T Consensus 173 AcSilyktklp-~ivvfNK~Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG 249 (366)
T KOG1532|consen 173 ACSILYKTKLP-FIVVFNKTDVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTG 249 (366)
T ss_pred HHHHHHhccCC-eEEEEeccccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccC
Confidence 88999998998 9999999999853 333333333333322211 00 03568899999999
Q ss_pred CCccccCCc
Q 012085 457 QNLVTAPDD 465 (471)
Q Consensus 457 ~gI~e~~~~ 465 (471)
.|+++.+..
T Consensus 250 ~G~ddf~~a 258 (366)
T KOG1532|consen 250 EGFDDFFTA 258 (366)
T ss_pred CcHHHHHHH
Confidence 999886643
No 240
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.4e-14 Score=134.53 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=115.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++..+|+++|.-+|||||++.+|.-... .+.-.|+......+.+.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~----------------------------------vttvPTiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEI----------------------------------VTTVPTIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCc----------------------------------ccCCCccccceeEEEEc
Confidence 34567899999999999999999862111 01122344444556677
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~ 420 (471)
+..+++||..||..++..+..|++..+++|||||+++. +.+.....++..++.... .-|++++.||.|+.++
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr------~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDR------ERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcH------HHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 99999999999999999999999999999999999965 446666677777776542 3359999999999865
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
-. ...+...+....+....+.|..++|.+|+|+.|..
T Consensus 134 ls------~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 134 LS------AAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred CC------HHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 22 23344444444555677889999999999998753
No 241
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=156.29 Aligned_cols=147 Identities=20% Similarity=0.246 Sum_probs=107.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+++|.||+|||||+|+|+|....+.+ -+|+|++.....+...+.
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgN-------------------------------wpGvTVEkkeg~~~~~~~ 50 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGN-------------------------------WPGVTVEKKEGKLKYKGH 50 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecC-------------------------------CCCeeEEEEEEEEEecCc
Confidence 3456999999999999999999985554433 389999999999999999
Q ss_pred EEEEEeCCCCCCchhh------hhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.|+|+||.-.+... ...++ ..+|++|-|+|+++- .......-++.++++| +|+++|++|
T Consensus 51 ~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL----------eRnLyltlQLlE~g~p-~ilaLNm~D 119 (653)
T COG0370 51 EIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL----------ERNLYLTLQLLELGIP-MILALNMID 119 (653)
T ss_pred eEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH----------HHHHHHHHHHHHcCCC-eEEEeccHh
Confidence 9999999994332211 11222 348999999999953 2233344456678988 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+. ..++--.+.|.+.+ | ++++|+||++|.|+++..
T Consensus 120 ~A~~--~Gi~ID~~~L~~~L---G-----vPVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 120 EAKK--RGIRIDIEKLSKLL---G-----VPVVPTVAKRGEGLEELK 156 (653)
T ss_pred hHHh--cCCcccHHHHHHHh---C-----CCEEEEEeecCCCHHHHH
Confidence 8642 22222234455443 4 689999999999977653
No 242
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=4.8e-14 Score=130.87 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=113.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+...+|+|+|..++||||++.+|......+...... . . .....+..|+.+....+...
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----------~---------~--s~k~kr~tTva~D~g~~~~~ 65 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----------S---------V--SGKGKRPTTVAMDFGSIELD 65 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeecccc----------c---------c--ccccccceeEeecccceEEc
Confidence 3456789999999999999999998543322111000 0 0 00001234555444445544
Q ss_pred C-eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 343 N-YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~-~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
. ..+.|++||||++|..++.-.++.+.++|+|+|.+++.. ...++++.++......|++|++||.|+....
T Consensus 66 ~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~--------~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ 137 (187)
T COG2229 66 EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT--------FHAEEIIDFLTSRNPIPVVVAINKQDLFDAL 137 (187)
T ss_pred CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc--------hHHHHHHHHHhhccCCCEEEEeeccccCCCC
Confidence 4 899999999999999999999999999999999998832 2457777888777733499999999998642
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. .+ .++++++... ..+++|+++|.+++++.+...
T Consensus 138 p--pe----~i~e~l~~~~---~~~~vi~~~a~e~~~~~~~L~ 171 (187)
T COG2229 138 P--PE----KIREALKLEL---LSVPVIEIDATEGEGARDQLD 171 (187)
T ss_pred C--HH----HHHHHHHhcc---CCCceeeeecccchhHHHHHH
Confidence 2 22 3333332221 356899999999999887643
No 243
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=4.6e-14 Score=137.82 Aligned_cols=82 Identities=27% Similarity=0.317 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|+|||||+++|++....+.. ..+.|.+.....+...+..++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~-------------------------------~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA-------------------------------YEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC-------------------------------CCCccccceEEEEEECCeEEE
Confidence 5899999999999999999963211100 122232222333445678999
Q ss_pred EEeCCCCCCc-------hhhhhhccccCCEEEEEEeCCCC
Q 012085 348 VLDSPGHKDF-------VPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 348 LIDTPG~e~f-------~~~~~~~l~~aD~vIlVVDas~g 380 (471)
+|||||+... ...+...++.+|++|+|+|++..
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 9999997532 23456788999999999999864
No 244
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=1.7e-14 Score=160.56 Aligned_cols=127 Identities=33% Similarity=0.467 Sum_probs=104.5
Q ss_pred EcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEeC
Q 012085 272 VGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDS 351 (471)
Q Consensus 272 VG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LIDT 351 (471)
+|++|+|||||+++|++..+.+.... ... . -.+.++....++.+|+|+......+.+.+..++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~--------~~~-~----~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG--------EVE-D----GTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc--------ccc-C----CcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999998776654321 000 0 1256788889999999999998899999999999999
Q ss_pred CCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 352 PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 352 PG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
||+.+|...+..++..+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+...
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~ 127 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVP-RIIFVNKMDRAGA 127 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence 99999999999999999999999999976 345666677777778887 8999999998753
No 245
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.55 E-value=6.8e-14 Score=132.79 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=92.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
+++|+|+|.+|+|||||+|+|++......... ..+ ....+........ .....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~---------~~~-----------------~~~~t~~~~~~~~-~~~~~ 53 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAA---------PTG-----------------VVETTMKRTPYPH-PKFPN 53 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCcc---------ccC-----------------ccccccCceeeec-CCCCC
Confidence 36899999999999999999996321100000 000 0001111111100 11346
Q ss_pred EEEEeCCCCCCchhh---h--hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 346 VVVLDSPGHKDFVPN---M--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 346 l~LIDTPG~e~f~~~---~--~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
+.+|||||....... + ...+..+|++|+|.+.. +......++..+...+.| +++|+||+|+...
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~ 122 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLS 122 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCCC-EEEEEecccchhh
Confidence 899999997542211 1 12356789988885433 345556677777777776 9999999999532
Q ss_pred Ch-----------hhHHHHHHHHHHHHHhcCCCCCCccEEEEecc--cCCCccc
Q 012085 421 SK-----------DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL--ENQNLVT 461 (471)
Q Consensus 421 ~~-----------e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk--tG~gI~e 461 (471)
.. +.++++.+.+...+...+... .+||.+|+. .+.|+..
T Consensus 123 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~--p~v~~vS~~~~~~~~~~~ 174 (197)
T cd04104 123 NEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSE--PPVFLVSNFDPSDYDFPK 174 (197)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHcCCCC--CCEEEEeCCChhhcChHH
Confidence 11 235556666666665555433 478999998 4555543
No 246
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=1.9e-14 Score=157.95 Aligned_cols=141 Identities=20% Similarity=0.207 Sum_probs=95.6
Q ss_pred cCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEeCC
Q 012085 273 GHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLDSP 352 (471)
Q Consensus 273 G~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LIDTP 352 (471)
|.+|+|||||+|+|++... .....+|+|++.....+...+..+++||||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-------------------------------~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-------------------------------TVGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-------------------------------eecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 8899999999999996321 111236788877766677777889999999
Q ss_pred CCCCchhh------hhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 353 GHKDFVPN------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 353 G~e~f~~~------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
|+.++... ...+ ...+|++++|+|+++. ... .+....+.+.++| +++|+||+|+.+...
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~-l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~-- 116 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERN-LYLTLQLLELGIP-MILALNLVDEAEKKG-- 116 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhh-HHHHHHHHhcCCC-EEEEEehhHHHHhCC--
Confidence 98876543 1222 2469999999999853 111 2223334456776 999999999863211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ...+.+.+.++ ++++++||++|+|++++++.
T Consensus 117 i~---~d~~~L~~~lg-----~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 117 IR---IDEEKLEERLG-----VPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred Ch---hhHHHHHHHcC-----CCEEEEECCCCCCHHHHHHH
Confidence 11 12223333333 47899999999999987654
No 247
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=7.1e-15 Score=133.68 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=103.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe-cCCC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-DSKN 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~ 343 (471)
..++++|+|++-+|||+|+..++.-.-. ... .++-|+.+-...+.+ ....
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfa------------------------els-----dptvgvdffarlie~~pg~r 57 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFA------------------------ELS-----DPTVGVDFFARLIELRPGYR 57 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCccc------------------------ccC-----CCccchHHHHHHHhcCCCcE
Confidence 3578999999999999999999821100 000 111122111111111 1234
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC---eEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp---~IIVVvNKiDl~~~ 420 (471)
.+++||||+||++|+..+.++++..-++++|+|.++. .+|+.+..+.+|. ....+-| -+.+|+.|+||...
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr---~sfehv~~w~~ea---~m~~q~P~k~VFlLVGhKsDL~Sq 131 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR---ESFEHVENWVKEA---AMATQGPDKVVFLLVGHKSDLQSQ 131 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch---hhHHHHHHHHHHH---HHhcCCCCeeEEEEeccccchhhh
Confidence 6899999999999999999999999999999999977 3444443333333 3333222 36788899999742
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. -..++..++.+.+|. .||++||++|.||.++|.
T Consensus 132 Rq----Vt~EEaEklAa~hgM-----~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 132 RQ----VTAEEAEKLAASHGM-----AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred cc----ccHHHHHHHHHhcCc-----eEEEecccCCCcHHHHHH
Confidence 22 223445556666664 789999999999999875
No 248
>PLN00023 GTP-binding protein; Provisional
Probab=99.53 E-value=1.2e-13 Score=140.39 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=92.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 340 (471)
....+||+|+|..|||||||+++|++..- ......+.|.++......+.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F-----------------------------~~~~~pTIG~d~~ik~I~~~~~ 68 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSS-----------------------------IARPPQTIGCTVGVKHITYGSP 68 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCc-----------------------------ccccCCceeeeEEEEEEEECCc
Confidence 45568999999999999999999984210 00111223333333333332
Q ss_pred -----------CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc------
Q 012085 341 -----------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------ 403 (471)
Q Consensus 341 -----------~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------ 403 (471)
.....+.||||+|++.|...+..+++.++++|+|+|++... . +.....++-.+....
T Consensus 69 ~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~---S---FenL~kWl~eI~~~~~~s~p~ 142 (334)
T PLN00023 69 GSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR---T---KTSLQKWASEVAATGTFSAPL 142 (334)
T ss_pred ccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH---H---HHHHHHHHHHHHHhccccccc
Confidence 13467999999999999999999999999999999999752 2 222223322222221
Q ss_pred --------CCCeEEEEEeCCCCCCCChhhH--HHHHHHHHHHHHhcCCCC
Q 012085 404 --------GVDQLIVAVNKMDAVQYSKDRF--DSIKVQLGTFLRSCGFKD 443 (471)
Q Consensus 404 --------~vp~IIVVvNKiDl~~~~~e~~--eei~~~L~~~l~~~g~~~ 443 (471)
.+| +|||+||+||......+. ....+..+++++..++.+
T Consensus 143 ~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 143 GSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCCCc
Confidence 244 999999999964211011 123456667777777643
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.53 E-value=5.3e-14 Score=121.62 Aligned_cols=107 Identities=25% Similarity=0.307 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+|+|.+|+|||||+|+|++....... ...+.|.......+...+..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~------------------------------~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS------------------------------NIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES------------------------------SSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc------------------------------ccccceeeeeeeeeeeceeeEE
Confidence 5999999999999999999963211111 1122333222233445778889
Q ss_pred EEeCCCCCC---------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 348 VLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 348 LIDTPG~e~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
|+||||... ....+...+..+|++|||+|+..+ ......++++.++ .+. |+++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~--------~~~~~~~~~~~l~-~~~-~~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP--------ITEDDKNILRELK-NKK-PIILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH--------SHHHHHHHHHHHH-TTS-EEEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHh-cCC-CEEEEEcC
Confidence 999999643 233456667889999999998753 3345556666665 444 59999998
No 250
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.53 E-value=3.2e-14 Score=141.74 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..-.|++||.||||||||+++|......+.. ++|++. .+..| ...+++
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKpkVa~-----------------YaFTTL------~P~iG--------~v~ydd 242 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-----------------YAFTTL------RPHIG--------TVNYDD 242 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCCcccc-----------------cceeee------ccccc--------eeeccc
Confidence 34457999999999999999999965443332 222111 11122 122333
Q ss_pred -eEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 344 -YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 344 -~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
..+++-|.||..+ +...+++.+..++.++||+|.+.+.....+..++....|+-.+-..+..+|.+||+|||
T Consensus 243 f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKi 322 (366)
T KOG1489|consen 243 FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKI 322 (366)
T ss_pred cceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEecc
Confidence 2399999999433 66778889999999999999997633233334444444444444445555699999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+.+.... . |..+.+.+. +..|||+||++|+|+.++..
T Consensus 323 D~~eae~~----~---l~~L~~~lq----~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 323 DLPEAEKN----L---LSSLAKRLQ----NPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred CchhHHHH----H---HHHHHHHcC----CCcEEEeeeccccchHHHHH
Confidence 99633211 1 233333222 22589999999999987643
No 251
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=4.4e-14 Score=152.13 Aligned_cols=162 Identities=28% Similarity=0.432 Sum_probs=115.7
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
.+..+.+-++|+||+++|||-|+..|.+..+.... ..|+|..+...+|.
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqege-------------------------------aggitqqIgAt~fp 518 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGE-------------------------------AGGITQQIGATYFP 518 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccccccc-------------------------------ccceeeeccccccc
Confidence 34566778999999999999999999864332211 13333333222221
Q ss_pred ------------------CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh
Q 012085 341 ------------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (471)
Q Consensus 341 ------------------~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~ 402 (471)
+.--.+.+||||||+.|.....++...||++|||+|..+| +..++.+.+.+|+.
T Consensus 519 ~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~ 590 (1064)
T KOG1144|consen 519 AENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM 590 (1064)
T ss_pred hHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh
Confidence 1223588999999999999999999999999999999999 78999999999999
Q ss_pred cCCCeEEEEEeCCCCCC-CC---------------hhhHHHHHHHHHHH---HHhcCCC----------CCCccEEEEec
Q 012085 403 FGVDQLIVAVNKMDAVQ-YS---------------KDRFDSIKVQLGTF---LRSCGFK----------DASLTWIPLSA 453 (471)
Q Consensus 403 ~~vp~IIVVvNKiDl~~-~~---------------~e~~eei~~~L~~~---l~~~g~~----------~~~i~IIpvSA 453 (471)
...| |||++||+|++- |. .....++..++..+ +.+.|.. ...+.++|+||
T Consensus 591 rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 591 RKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred cCCC-eEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 9988 999999999852 11 11122333333322 2333332 12468999999
Q ss_pred ccCCCcccc
Q 012085 454 LENQNLVTA 462 (471)
Q Consensus 454 ktG~gI~e~ 462 (471)
..|+||.++
T Consensus 670 ~sGeGipdL 678 (1064)
T KOG1144|consen 670 ISGEGIPDL 678 (1064)
T ss_pred ccCCCcHHH
Confidence 999999875
No 252
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=4.9e-14 Score=127.40 Aligned_cols=133 Identities=21% Similarity=0.249 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.||+|||.+|+|||||+++|.+.... ...|..+ .+ .=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----------------------------------~~KTq~i-----~~---~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----------------------------------YKKTQAI-----EY---YD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----------------------------------cCcccee-----Ee---cc
Confidence 37999999999999999999853221 1111111 11 11
Q ss_pred EEEeCCC----CCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 347 ~LIDTPG----~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
.+||||| +..|....+.....||++++|.|++.+.. ..-..++..+..| +|-|+||+|+... .
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~-----------~~pP~fa~~f~~p-vIGVITK~Dl~~~-~ 105 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRS-----------VFPPGFASMFNKP-VIGVITKIDLPSD-D 105 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCc-----------cCCchhhcccCCC-EEEEEECccCccc-h
Confidence 4699999 55567777777788999999999997621 1112334445555 9999999999832 2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.. .+..+++|+..|+. .+|++|+.+|+||.++.
T Consensus 106 ~~----i~~a~~~L~~aG~~----~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 106 AN----IERAKKWLKNAGVK----EIFEVSAVTGEGIEELK 138 (143)
T ss_pred hh----HHHHHHHHHHcCCC----CeEEEECCCCcCHHHHH
Confidence 22 34566677777875 35999999999999853
No 253
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.51 E-value=1.1e-14 Score=128.42 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=105.8
Q ss_pred EEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEEEe
Q 012085 271 IVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVVLD 350 (471)
Q Consensus 271 VVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~LID 350 (471)
++|.+++|||.|+-|+.. +..-. ++ --.+-|+......+.......++++||
T Consensus 2 llgds~~gktcllir~kd--gafl~---------------~~-----------fistvgid~rnkli~~~~~kvklqiwd 53 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKD--GAFLA---------------GN-----------FISTVGIDFRNKLIDMDDKKVKLQIWD 53 (192)
T ss_pred ccccCccCceEEEEEecc--Cceec---------------Cc-----------eeeeeeeccccceeccCCcEEEEEEee
Confidence 689999999999987751 11000 00 011234444445555666778999999
Q ss_pred CCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHH
Q 012085 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (471)
Q Consensus 351 TPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~ 430 (471)
|+||++|+..+..+++.+|++++|+|+.+. ++|++++.+..++.++.++. +. ++++.||+|+....... .+
T Consensus 54 tagqerfrsvt~ayyrda~allllydiank---asfdn~~~wlsei~ey~k~~-v~-l~llgnk~d~a~er~v~----~d 124 (192)
T KOG0083|consen 54 TAGQERFRSVTHAYYRDADALLLLYDIANK---ASFDNCQAWLSEIHEYAKEA-VA-LMLLGNKCDLAHERAVK----RD 124 (192)
T ss_pred ccchHHHhhhhHhhhcccceeeeeeecccc---hhHHHHHHHHHHHHHHHHhh-Hh-Hhhhccccccchhhccc----cc
Confidence 999999999999999999999999999977 56677777766666666543 23 78999999996421111 12
Q ss_pred HHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 431 ~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.-.++.+.+ .+||.++||++|.|++-+|-
T Consensus 125 dg~kla~~y-----~ipfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 125 DGEKLAEAY-----GIPFMETSAKTGFNVDLAFL 153 (192)
T ss_pred hHHHHHHHH-----CCCceeccccccccHhHHHH
Confidence 222333333 46999999999999987653
No 254
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=9.1e-14 Score=123.72 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=109.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++-.|+|..|+|||.|+..++...- |. ....+.|+.+....+.+.....
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf---------------------------ma--dcphtigvefgtriievsgqki 60 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF---------------------------MA--DCPHTIGVEFGTRIIEVSGQKI 60 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH---------------------------hh--cCCcccceecceeEEEecCcEE
Confidence 356789999999999999999983211 11 1122345555555566667788
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC--eEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD--QLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp--~IIVVvNKiDl~~~~~ 422 (471)
+++||||+|+++|+..+.++++.+.++++|+|.++..+ +... ..++.-++.+-.| -|+++.||.|+.....
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrst------ynhl-sswl~dar~ltnpnt~i~lignkadle~qrd 133 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST------YNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD 133 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhh------hhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc
Confidence 99999999999999999999999999999999997732 2222 2233333333333 3788899999964332
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ +..+.+..+.| ..|+++||++|+|+.++|-
T Consensus 134 v~y----eeak~faeeng-----l~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 134 VTY----EEAKEFAEENG-----LMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred CcH----HHHHHHHhhcC-----eEEEEecccccCcHHHHHH
Confidence 223 34455555555 4889999999999998763
No 255
>PRK09866 hypothetical protein; Provisional
Probab=99.50 E-value=2.1e-13 Score=147.46 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=77.3
Q ss_pred CeEEEEEeCCCCCC-----chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-CeEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHKD-----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMD 416 (471)
Q Consensus 343 ~~~l~LIDTPG~e~-----f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-p~IIVVvNKiD 416 (471)
..+++|+||||... +...+...+..+|++|||+|+..+ ......+++..++..+. .|+|+|+||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~--------~s~~DeeIlk~Lkk~~K~~PVILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL--------KSISDEEVREAILAVGQSVPLYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC--------CChhHHHHHHHHHhcCCCCCEEEEEEccc
Confidence 46899999999533 344566788999999999999875 23445666777777664 24999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+........+.+...+...+...++ +...||||||+.|.|+.++.
T Consensus 301 l~dreeddkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 301 QQDRNSDDADQVRALISGTLMKGCI--TPQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred CCCcccchHHHHHHHHHHHHHhcCC--CCceEEEEeCCCCCCHHHHH
Confidence 9743222344455555544443333 23578999999999998754
No 256
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.50 E-value=5.3e-13 Score=129.65 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=101.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
...+..|+|+|.+|+|||||++.|++..... ......|. +.+ ....
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-----------------------------~~~~~~g~-i~i----~~~~ 81 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-----------------------------NISDIKGP-ITV----VTGK 81 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC-----------------------------cccccccc-EEE----EecC
Confidence 3456779999999999999999998532110 00011221 111 2235
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++++||||+. ..+...+..+|++|||+|+..+ +..+...++.++...+.|.+|+|+||+|+... .
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~ 149 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKK-N 149 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-H
Confidence 6789999999963 5556677889999999999876 34556677888888888856679999999853 3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNL 459 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI 459 (471)
..++.+.+.|+..+...-+ +..+|+++||++.-.+
T Consensus 150 ~~~~~~~~~l~~~~~~~~~--~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVY--QGAKLFYLSGIVHGRY 184 (225)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCcEEEEeeccCCCC
Confidence 3455666666664332112 2468999999987433
No 257
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.50 E-value=1.6e-13 Score=130.86 Aligned_cols=158 Identities=21% Similarity=0.151 Sum_probs=103.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|+++|.+|+|||+|+.++++..-.. ..+.+.+ ........++....
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~------------------------~y~ptie------d~y~k~~~v~~~~~ 51 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVE------------------------DYDPTIE------DSYRKELTVDGEVC 51 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccccc------------------------ccCCCcc------ccceEEEEECCEEE
Confidence 45789999999999999999998421110 0111111 11222333455667
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.+.|+||+|+++|..+...+++.+|++++|+++++..+ |+.+......+.+......+| +|+|+||+|+.......
T Consensus 52 ~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~S---F~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V~ 127 (196)
T KOG0395|consen 52 MLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSS---FEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQVS 127 (196)
T ss_pred EEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHH---HHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhccccC
Confidence 88899999999999999999999999999999997733 332222222221111122345 99999999997532222
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++ ...+...++ +.|+++||+...|+.++|..
T Consensus 128 ~ee----g~~la~~~~-----~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 128 EEE----GKALARSWG-----CAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred HHH----HHHHHHhcC-----CcEEEeeccCCcCHHHHHHH
Confidence 222 222233333 46899999999999998754
No 258
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=2.9e-13 Score=129.33 Aligned_cols=115 Identities=22% Similarity=0.303 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--CCCeE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKNYH 345 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~~~ 345 (471)
+|+|+|++|+|||||+++|+........ ..++.......+. ..+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~--------------------------------~s~~~~~~~~~~~~~~~~~~ 49 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV--------------------------------TSIEPNVATFILNSEGKGKK 49 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc--------------------------------CcEeecceEEEeecCCCCce
Confidence 5999999999999999999842110000 0000111111111 34578
Q ss_pred EEEEeCCCCCCchhhhhhccccC-CEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeCCCCCC
Q 012085 346 VVVLDSPGHKDFVPNMISGATQS-DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~a-D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNKiDl~~ 419 (471)
+.|||||||.++...+..+++.+ +++|||+|+.... ..+.....++..++.. .++| ++||+||+|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch-----hHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 99999999999999988899998 9999999999641 1122233333333322 2445 999999999875
Q ss_pred C
Q 012085 420 Y 420 (471)
Q Consensus 420 ~ 420 (471)
.
T Consensus 124 a 124 (203)
T cd04105 124 A 124 (203)
T ss_pred c
Confidence 3
No 259
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.49 E-value=2.6e-13 Score=129.24 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEE-EEEEEe-cCCC
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYF-DSKN 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~-~~~~~~-~~~~ 343 (471)
.++|+|+|..|+|||||+++|.+...... ..+.+... ...... ....
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEG-------------------------------YPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCccc-------------------------------CCCceeeeeEEEEEEeCCCE
Confidence 38899999999999999999995322111 11111111 111111 1125
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~ 421 (471)
..+.+|||+|+++|...+..+...++++++|+|.... ........++...+.... .-++|+|.||+|+....
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR------ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc------hhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 6799999999999999999999999999999999953 224455566665555544 22499999999998643
Q ss_pred hhhHHHHHHH---------HHHHHHhcCCCCCCccEEEEecc--cCCCccccCC
Q 012085 422 KDRFDSIKVQ---------LGTFLRSCGFKDASLTWIPLSAL--ENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~---------L~~~l~~~g~~~~~i~IIpvSAk--tG~gI~e~~~ 464 (471)
... ..+... .......... ....++.+||+ .+.|+.+++.
T Consensus 128 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~~v~~~~~ 178 (219)
T COG1100 128 SSS-EEILNQLNREVVLLVLAPKAVLPEV--ANPALLETSAKSLTGPNVNELFK 178 (219)
T ss_pred hHH-HHHHhhhhcCcchhhhHhHHhhhhh--cccceeEeecccCCCcCHHHHHH
Confidence 211 111111 1111111110 12237999999 9999887654
No 260
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.49 E-value=1.8e-13 Score=156.76 Aligned_cols=110 Identities=25% Similarity=0.455 Sum_probs=83.4
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC-CCCh-
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV-QYSK- 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~-~~~~- 422 (471)
.++|||||||+.|...+..++..+|++|+|+|++.+ +..++.+++.++...++| +|+|+||+|+. ++..
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G--------i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~ 597 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG--------FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNIS 597 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccc
Confidence 489999999999998888889999999999999977 567888888888888887 99999999996 3320
Q ss_pred --------------hhHHHHHHHH---HHHHHhcCCCC----------CCccEEEEecccCCCccccC
Q 012085 423 --------------DRFDSIKVQL---GTFLRSCGFKD----------ASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 --------------e~~eei~~~L---~~~l~~~g~~~----------~~i~IIpvSAktG~gI~e~~ 463 (471)
..++++...+ ...|.+.|+.. ..+++|||||++|+||+++.
T Consensus 598 ~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll 665 (1049)
T PRK14845 598 EDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELL 665 (1049)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence 1122222222 22244555432 35799999999999998864
No 261
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=6e-14 Score=127.03 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=105.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.-.++|+++|..-+|||+|+-|++...-. - ... .+....+......++...
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn--~----------kHl-----------------sTlQASF~~kk~n~ed~r 61 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFN--C----------KHL-----------------STLQASFQNKKVNVEDCR 61 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcc--h----------hhH-----------------HHHHHHHhhcccccccce
Confidence 34578999999999999999998831100 0 000 000000111111233455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC-eEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp-~IIVVvNKiDl~~~~~ 422 (471)
..+.||||+||++|-..-.-|++..+++|||+|.++. ++++....|..++-.-+|.. .++||.||+||.+..
T Consensus 62 a~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr------dSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR- 134 (218)
T KOG0088|consen 62 ADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR------DSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER- 134 (218)
T ss_pred eeeeeeeccchHhhhccCceEEeCCCceEEEEeccch------HHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh-
Confidence 6799999999999988888899999999999999965 34555555555554444432 379999999996322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.-..+....+....| ..++.+||+.+.||.++|..
T Consensus 135 ---~Vt~qeAe~YAesvG-----A~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 135 ---QVTRQEAEAYAESVG-----ALYMETSAKDNVGISELFES 169 (218)
T ss_pred ---hhhHHHHHHHHHhhc-----hhheecccccccCHHHHHHH
Confidence 223344455555555 36799999999999998753
No 262
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.48 E-value=1.5e-13 Score=123.12 Aligned_cols=150 Identities=20% Similarity=0.198 Sum_probs=109.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+.+.++|..++|||||+|.+..- ......+.|+...+..+......
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g---------------------------------~~~edmiptvGfnmrk~tkgnvt 66 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARG---------------------------------QYLEDMIPTVGFNMRKVTKGNVT 66 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeec---------------------------------cchhhhcccccceeEEeccCceE
Confidence 456999999999999999988620 00111333555566667777889
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~ 422 (471)
+.+||.|||.+|..++..+.+.+++++||||+..+ +.+.....|+..++.. .++| ++|++||+|+.++-.
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~------~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~ 139 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADP------DKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALS 139 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCc------ccchhhHHHHHHHhcchhhcCCc-EEEecccccCccccc
Confidence 99999999999999999999999999999999965 3355566666666644 3555 999999999987532
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
. ..|-..+.-..+++..+..+.+|+++..||+-
T Consensus 140 ~------~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 140 K------IALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred H------HHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 1 12222222234455667889999999999874
No 263
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.47 E-value=1.8e-13 Score=117.86 Aligned_cols=119 Identities=24% Similarity=0.220 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|..|+||||||++|++.... .........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP---------------------------DNSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc---------------------------ccccccccCCCcEEEEEEEecCCceEEE
Confidence 6999999999999999999964322 0001111233333333444555555699
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
|||++|++.+.......+..+|++|+|+|+++.. ++..+.....++..+-......|+|||+||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~---s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPE---SLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHH---HHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChH---HHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999887776555688999999999999652 22222222223222222122235999999998
No 264
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=7.7e-14 Score=142.76 Aligned_cols=177 Identities=47% Similarity=0.874 Sum_probs=156.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|+..+||||+.. +.++.+..+.++++++++.+.++++|.++|.++....++.++++++.....+....
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 456889999999999999988 66788999999999999999999999999999999999999999888888888889
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--CC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~--~~ 421 (471)
+.++++|.|||.+|...+..+..++|++++++.+..+.+++.+. ..+|+++++.+...+++.++|+.+||||... +.
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagis-kngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s 160 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS-KNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 160 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeecc-ccchhhhhhhhhccccceeeeEEeecccccCCCcc
Confidence 99999999999999999999999999999999998887887765 4589999999999999988999999999876 34
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDA 444 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~ 444 (471)
..++.++.+..+......++.+.
T Consensus 161 ~~r~~ei~k~~~~~~~~~g~n~~ 183 (391)
T KOG0052|consen 161 EARYEEIKKEVSSYIKKIGYNPA 183 (391)
T ss_pred ccchhhhheeeeeeeeccccCCh
Confidence 56777777777777766666554
No 265
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-13 Score=136.53 Aligned_cols=120 Identities=23% Similarity=0.365 Sum_probs=83.9
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
.+.++.++|+|+|.||||||||.|.++|....+..+.++ .|.......+.
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~------------------------------TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH------------------------------TTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccccc------------------------------ceeeeeeEEEe
Confidence 456788999999999999999999999877766555432 34444445566
Q ss_pred CCCeEEEEEeCCCCC------C------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCe
Q 012085 341 SKNYHVVVLDSPGHK------D------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQ 407 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e------~------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~ 407 (471)
.+..+++|+||||.. + +.......+..||++++|+|+++.-. ...-..+..+... .+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~--------~l~p~vl~~l~~ys~ip- 187 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT--------PLHPRVLHMLEEYSKIP- 187 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC--------ccChHHHHHHHHHhcCC-
Confidence 788899999999922 1 22233455677999999999995311 1222334444443 344
Q ss_pred EEEEEeCCCCCC
Q 012085 408 LIVAVNKMDAVQ 419 (471)
Q Consensus 408 IIVVvNKiDl~~ 419 (471)
-|+|+||+|.+.
T Consensus 188 s~lvmnkid~~k 199 (379)
T KOG1423|consen 188 SILVMNKIDKLK 199 (379)
T ss_pred ceeeccchhcch
Confidence 799999999874
No 266
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=4.4e-13 Score=134.50 Aligned_cols=151 Identities=19% Similarity=0.270 Sum_probs=98.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|.|.||||||||+++|++....+.. .+-.|..+...+++....
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-------------------------------YPFTTK~i~vGhfe~~~~ 215 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-------------------------------YPFTTKGIHVGHFERGYL 215 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCC-------------------------------CCccccceeEeeeecCCc
Confidence 4567999999999999999999964433322 244566777788889999
Q ss_pred EEEEEeCCCCCC--------chhhhhhcccc-CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 345 HVVVLDSPGHKD--------FVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 345 ~l~LIDTPG~e~--------f~~~~~~~l~~-aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.+++|||||.-+ .-.+.+.+++. .+++||++|.+..+ +. .+..|...+.++-..+. +|+++|+||+
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c---gy-~lE~Q~~L~~eIk~~f~-~p~v~V~nK~ 290 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETC---GY-SLEEQISLLEEIKELFK-APIVVVINKI 290 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc---CC-CHHHHHHHHHHHHHhcC-CCeEEEEecc
Confidence 999999999332 22223344443 78899999998542 22 24445555555555566 4599999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
|... .+.++++... +...+.. ..+.+++..+.+++.
T Consensus 291 D~~~--~e~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~d~ 326 (346)
T COG1084 291 DIAD--EEKLEEIEAS----VLEEGGE----EPLKISATKGCGLDK 326 (346)
T ss_pred cccc--hhHHHHHHHH----HHhhccc----cccceeeeehhhHHH
Confidence 9983 3444443333 3222321 236677777776654
No 267
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.5e-14 Score=126.15 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
.+++||||+||++|+..+...++.|=++||++|.+.. ++|-. .+.|+..++.. ..|.||++.||+|+...
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e---qSFLn----vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE---QSFLN----VRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch---HHHHH----HHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 6789999999999999999999999999999999954 44322 23344444332 34669999999999732
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
. .--..+...+...+| +|+|++||-+|+||.++.
T Consensus 140 R----~Vs~~qa~~La~kyg-----lPYfETSA~tg~Nv~kav 173 (219)
T KOG0081|consen 140 R----VVSEDQAAALADKYG-----LPYFETSACTGTNVEKAV 173 (219)
T ss_pred h----hhhHHHHHHHHHHhC-----CCeeeeccccCcCHHHHH
Confidence 1 112344455555555 589999999999998753
No 268
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=8.9e-13 Score=142.97 Aligned_cols=173 Identities=27% Similarity=0.371 Sum_probs=131.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
....+|.|+.|.++|||||...|+...+.+..+... . .-++|....++.+|+|.....+.+...+
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlag------------k---irfld~redeq~rgitmkss~is~~~~~ 71 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAG------------K---IRFLDTREDEQTRGITMKSSAISLLHKD 71 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhcc------------c---eeeccccchhhhhceeeeccccccccCc
Confidence 456789999999999999999999877766655321 1 2358888899999999988887777789
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC----
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ---- 419 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~---- 419 (471)
+.++|||+|||.+|.....+..+.+|+++++||+..| +-.++...++++-..+.. +|+|+||||+.-
T Consensus 72 ~~~nlidspghvdf~sevssas~l~d~alvlvdvveg--------v~~qt~~vlrq~~~~~~~-~~lvinkidrl~~el~ 142 (887)
T KOG0467|consen 72 YLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEG--------VCSQTYAVLRQAWIEGLK-PILVINKIDRLITELK 142 (887)
T ss_pred eEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccc--------cchhHHHHHHHHHHccCc-eEEEEehhhhHHHHHh
Confidence 9999999999999999999999999999999999988 446777777777666777 799999999532
Q ss_pred -CChhhHHH---HHHHHHHHHH-------------------hcCCCCCCccEEEEecccCCCcc
Q 012085 420 -YSKDRFDS---IKVQLGTFLR-------------------SCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 420 -~~~e~~ee---i~~~L~~~l~-------------------~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
.+.+.+.. +.+++...+. ..-|.+..-.++..||.+|.|+-
T Consensus 143 lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 143 LSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFG 206 (887)
T ss_pred cChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCCCCcEEEEEeccccccc
Confidence 12233222 2222222222 22344455678999999998763
No 269
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.6e-13 Score=117.48 Aligned_cols=153 Identities=19% Similarity=0.165 Sum_probs=111.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+.+|..++||||++-.|.-.... ..-.|+......+.+.+.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~----------------------------------~~ipTvGFnvetVtykN~ 61 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV----------------------------------TTIPTVGFNVETVTYKNV 61 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc----------------------------------ccccccceeEEEEEeeee
Confidence 3578999999999999999999732111 111233334444567888
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~ 422 (471)
.|.+||..|+...++.+..|+....++|||+|+... +.+.+...|+..++... ..-+++|..||.|+..+..
T Consensus 62 kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~------dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~ 135 (180)
T KOG0071|consen 62 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR------DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK 135 (180)
T ss_pred EEeeeeccCchhhhHHHHhhccCCceEEEEEeccch------hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC
Confidence 999999999999999999999999999999999854 34556666666666432 2224889999999986532
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
. +++..++.-...+...+.+.|++|.+|+|+.|-+
T Consensus 136 --p----qei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 136 --P----QEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred --H----HHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence 2 3344444433455667889999999999998743
No 270
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2.7e-13 Score=124.62 Aligned_cols=166 Identities=16% Similarity=0.120 Sum_probs=109.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
.++..+.|+|+|.-++|||||+.++-...... .......+ -..|+.+.....+.
T Consensus 13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~-------------------------~~~l~~~k-i~~tvgLnig~i~v 66 (197)
T KOG0076|consen 13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKA-------------------------YGGLNPSK-ITPTVGLNIGTIEV 66 (197)
T ss_pred hhhhhhhheeeccccCCchhHHHHHHHHHHhh-------------------------hcCCCHHH-eecccceeecceee
Confidence 34556789999999999999999886221100 00011111 11233344444455
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..+.+||..||+.....+..++..+|++|+|||+++... +.......+.....-...++| +++.+||.|+.+.
T Consensus 67 ~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR---~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~- 141 (197)
T KOG0076|consen 67 CNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRER---FEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNA- 141 (197)
T ss_pred ccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHH---HHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhh-
Confidence 57889999999999999999999999999999999997522 222222333333333345777 8999999999743
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
....++...+.. ....+ .+..+|.||||++|+||.+.
T Consensus 142 -~~~~El~~~~~~-~e~~~--~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 -MEAAELDGVFGL-AELIP--RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred -hhHHHHHHHhhh-hhhcC--CccCccccchhhhcccHHHH
Confidence 333444444443 22222 34568999999999999874
No 271
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=1.5e-12 Score=134.13 Aligned_cols=147 Identities=19% Similarity=0.162 Sum_probs=97.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
...+.|+++|.+|+|||||+|+|++........ .-.|.+.....+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~-------------------------------LFATLdpttR~~~l~~ 238 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQ-------------------------------LFATLDPTTRRIELGD 238 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecccc-------------------------------ccccccCceeEEEeCC
Confidence 445679999999999999999999543332221 112222222233333
Q ss_pred CeEEEEEeCCCCCCch--------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC--CeEEEEE
Q 012085 343 NYHVVVLDSPGHKDFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAV 412 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v--p~IIVVv 412 (471)
+..+.|-||-|+.+-. ..++.....+|++|+|||++.+. +..+..-...++.+.+. +|+|+|+
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~-------~~~~~~~v~~vL~el~~~~~p~i~v~ 311 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPE-------ILEKLEAVEDVLAEIGADEIPIILVL 311 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChh-------HHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 6789999999966532 23345566799999999999772 45566666677777643 4599999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
||+|++.... ....+... . + ..|++||++|.|++.+
T Consensus 312 NKiD~~~~~~-----~~~~~~~~----~---~--~~v~iSA~~~~gl~~L 347 (411)
T COG2262 312 NKIDLLEDEE-----ILAELERG----S---P--NPVFISAKTGEGLDLL 347 (411)
T ss_pred ecccccCchh-----hhhhhhhc----C---C--CeEEEEeccCcCHHHH
Confidence 9999885311 11111111 1 1 4699999999999764
No 272
>PTZ00099 rab6; Provisional
Probab=99.39 E-value=3.1e-12 Score=119.65 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=82.0
Q ss_pred cceEEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC-CC
Q 012085 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VD 406 (471)
Q Consensus 328 ~GiTi~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-vp 406 (471)
.|.........+......+.||||||++.|...+..+++.+|++|||+|++... .+.....++..++...+ ..
T Consensus 13 ig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~------sf~~~~~w~~~i~~~~~~~~ 86 (176)
T PTZ00099 13 IGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ------SFENTTKWIQDILNERGKDV 86 (176)
T ss_pred cceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCC
Confidence 333333333345556688999999999999999999999999999999999752 23334444444444332 22
Q ss_pred eEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 407 ~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+|||+||+|+........+ ....+....+ ..|+++||++|.||.++|..
T Consensus 87 piilVgNK~DL~~~~~v~~~----e~~~~~~~~~-----~~~~e~SAk~g~nV~~lf~~ 136 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYE----EGMQKAQEYN-----TMFHETSAKAGHNIKVLFKK 136 (176)
T ss_pred eEEEEEECcccccccCCCHH----HHHHHHHHcC-----CEEEEEECCCCCCHHHHHHH
Confidence 48999999999642211111 2223333332 46899999999999998753
No 273
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.37 E-value=8.9e-12 Score=124.82 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC--
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-- 343 (471)
.++|+|+|.+|+|||||+|+|++.......... ..........+.+......+...+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~---------------------~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP---------------------DPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC---------------------CccccccCCceEEEEEEEEEEECCEE
Confidence 578999999999999999999864322211100 000011112222332223333333
Q ss_pred eEEEEEeCCCCCCchh---------------------hhh-----hccc--cCCEEEEEEeCCCCccccccchhhhHHHH
Q 012085 344 YHVVVLDSPGHKDFVP---------------------NMI-----SGAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~---------------------~~~-----~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (471)
..++||||||..++.. ... ..+. .+|++||+++.+.. .+.....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-------~l~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-------GLKPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-------CCCHHHHH
Confidence 5799999999544321 111 1122 48899999998742 13445566
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
.+..+.. ++| +|+|+||+|+.. .+.+...+..+.+.+...++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l~--~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTLT--PEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcCC--HHHHHHHHHHHHHHHHHcCC
Confidence 6666654 566 999999999973 44455667777777777653
No 274
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.37 E-value=2.9e-12 Score=129.16 Aligned_cols=159 Identities=21% Similarity=0.244 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
--|++||.|||||||||+++......+... .| +...+..| +... .....|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadY-----------------pF------TTL~PnLG------vV~~-~~~~sf 209 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADY-----------------PF------TTLVPNLG------VVRV-DGGESF 209 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCC-----------------cc------ccccCccc------EEEe-cCCCcE
Confidence 358999999999999999998654443321 11 11112222 2222 456679
Q ss_pred EEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 347 ~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
++-|.||..+ +...+++++..+.++++|||.+...-......++....|+..+-..+..+|.|||+||||++.
T Consensus 210 v~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 210 VVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred EEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 9999999543 667788899999999999999854222223445455555555544444445899999999764
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
. .+.+++..+.+.... ++ ..++++||.+++|+.++.
T Consensus 290 ~-~e~~~~~~~~l~~~~---~~----~~~~~ISa~t~~g~~~L~ 325 (369)
T COG0536 290 D-EEELEELKKALAEAL---GW----EVFYLISALTREGLDELL 325 (369)
T ss_pred C-HHHHHHHHHHHHHhc---CC----CcceeeehhcccCHHHHH
Confidence 3 444454444444432 22 122449999999998753
No 275
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.2e-13 Score=139.10 Aligned_cols=136 Identities=33% Similarity=0.441 Sum_probs=115.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+.+.++||||...||++..+.+.... .-+++ .++.+....++++|+|++.....|+|++
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g---------~vddg----dtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG---------DVDDG----DTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc---------ccCCC----chHHHHHHHHHhcCceeeeeeeeccccc
Confidence 4567899999999999999999998766543321 11111 2456777889999999999999999999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
+++.|||||||.+|.-...+.++..|+++.|+|++.| ++.|+.-.++....+++| -++++||||...++
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasag--------ve~qtltvwrqadk~~ip-~~~finkmdk~~an 170 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG--------VEAQTLTVWRQADKFKIP-AHCFINKMDKLAAN 170 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC--------cccceeeeehhccccCCc-hhhhhhhhhhhhhh
Confidence 9999999999999999999999999999999999998 677888888888888998 68889999997643
No 276
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-13 Score=140.85 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=105.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
-+..++|+|+|+||||||||+|+|...... ...+.+|.|.+.....++..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drs------------------------------IVSpv~GTTRDaiea~v~~~ 314 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRS------------------------------IVSPVPGTTRDAIEAQVTVN 314 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCce------------------------------EeCCCCCcchhhheeEeecC
Confidence 356689999999999999999999954433 34456899999888889999
Q ss_pred CeEEEEEeCCCCCC---------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC---------
Q 012085 343 NYHVVVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--------- 404 (471)
Q Consensus 343 ~~~l~LIDTPG~e~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--------- 404 (471)
+..+.|+||+|..+ -.......+.++|++++|+|+....++. ...+.+.+...+
T Consensus 315 G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s--------d~~i~~~l~~~~~g~~~~~~~ 386 (531)
T KOG1191|consen 315 GVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES--------DLKIARILETEGVGLVVIVNK 386 (531)
T ss_pred CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc--------chHHHHHHHHhccceEEEecc
Confidence 99999999999665 2233355677899999999996553332 223333333321
Q ss_pred --CCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 405 --VDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 405 --vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++|++.||+|+...-.+ +......++...+.. .......+|+++++|+..+..
T Consensus 387 ~~~~~~i~~~nk~D~~s~~~~----~~~~~~~~~~~~~~~-~~~i~~~vs~~tkeg~~~L~~ 443 (531)
T KOG1191|consen 387 MEKQRIILVANKSDLVSKIPE----MTKIPVVYPSAEGRS-VFPIVVEVSCTTKEGCERLST 443 (531)
T ss_pred ccccceEEEechhhccCcccc----ccCCceeccccccCc-ccceEEEeeechhhhHHHHHH
Confidence 1358999999999743111 111111122111211 112345599999999987643
No 277
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.36 E-value=4.3e-12 Score=120.07 Aligned_cols=136 Identities=22% Similarity=0.262 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+|+|+|........ ...+.|...........+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL-----------------------------SASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc-----------------------------CCCCcccccceeeEEECCeEE
Confidence 479999999999999999999754322111 013444444444445577899
Q ss_pred EEEeCCCCCCch-------hhh----hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-C---CCeEEEE
Q 012085 347 VVLDSPGHKDFV-------PNM----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-G---VDQLIVA 411 (471)
Q Consensus 347 ~LIDTPG~e~f~-------~~~----~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~---vp~IIVV 411 (471)
.||||||..+.. ..+ ......+|++|||+++.+ .+ ......++.+... + .+++|||
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t--------~~d~~~l~~l~~~fg~~~~~~~ivv 122 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT--------EEEEQAVETLQELFGEKVLDHTIVL 122 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC--------HHHHHHHHHHHHHhChHhHhcEEEE
Confidence 999999965431 111 223456899999999885 22 2334444444332 2 2358999
Q ss_pred EeCCCCCCCC--hhhHHHHHHHHHHHHHhcC
Q 012085 412 VNKMDAVQYS--KDRFDSIKVQLGTFLRSCG 440 (471)
Q Consensus 412 vNKiDl~~~~--~e~~eei~~~L~~~l~~~g 440 (471)
+|++|..... .+.+......++.+++.++
T Consensus 123 ~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 123 FTRGDDLEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred EECccccCCCcHHHHHHhccHHHHHHHHHhC
Confidence 9999987532 1112223356677777665
No 278
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-12 Score=139.02 Aligned_cols=137 Identities=34% Similarity=0.556 Sum_probs=119.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+-+-.+|||||-.+++.+.+.+..-.. ..++ ...|+....++.+|+|++....++.+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~e--------v~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGE--------VRGG-----GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccc--------cccC-----ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 36788999999999999999999987776543211 1111 3568888999999999999999999999
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
.++.|||||||.+|.....+.++..|++|+|+++..| ++.|+.-...+++..++| .|..+||||+.+.+.
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~G--------VqsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAG--------VESQTETVWRQMKRYNVP-RICFINKMDRMGASP 173 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccc--------eehhhHHHHHHHHhcCCC-eEEEEehhhhcCCCh
Confidence 9999999999999999999999999999999999988 788999999999999999 788899999998654
No 279
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=3.3e-13 Score=124.56 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=103.8
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
+-...++++|+|..++||||+|.+++- +..+.. .....|+.+......+..
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCk--gifTkd---------------------------ykktIgvdflerqi~v~~ 66 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCK--GIFTKD---------------------------YKKTIGVDFLERQIKVLI 66 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhc--cccccc---------------------------cccccchhhhhHHHHhhH
Confidence 345678999999999999999999981 111111 011112221111112334
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
++..+.+|||+|+++|...+..++++|.+.+||+..++. .++.....|...+..+.+--|.++|-||||+++.+
T Consensus 67 Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr------~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 67 EDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR------YSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH------HHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 556788999999999999999999999999999999965 23444555555555555433499999999998643
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.-.-.++.. +.+. +. ..++-+|++...|+..+|
T Consensus 141 ~~~~~evE~-lak~---l~-----~RlyRtSvked~NV~~vF 173 (246)
T KOG4252|consen 141 QMDKGEVEG-LAKK---LH-----KRLYRTSVKEDFNVMHVF 173 (246)
T ss_pred hcchHHHHH-HHHH---hh-----hhhhhhhhhhhhhhHHHH
Confidence 222222222 2222 22 245889999999988765
No 280
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.32 E-value=9.1e-12 Score=117.14 Aligned_cols=118 Identities=20% Similarity=0.293 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
...|+|+|+.|+|||+|+.+|.......+.. ..+...+.. .-...+..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t----------------------------S~e~n~~~~----~~~~~~~~ 50 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVT----------------------------SMENNIAYN----VNNSKGKK 50 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-------------------------------SSEEEECC----GSSTCGTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeec----------------------------cccCCceEE----eecCCCCE
Confidence 3569999999999999999998531111000 000000000 01224568
Q ss_pred EEEEeCCCCCCchhhhhhc---cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCCCC
Q 012085 346 VVVLDSPGHKDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAV 418 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiDl~ 418 (471)
+.|||+|||.+++...... +..+.++|||||+..- ...+......+..++... ..+|++|+.||.|+.
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~-----~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD-----QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH-----HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc-----hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 9999999999999887776 8889999999999831 111233333333433322 345799999999997
Q ss_pred CC
Q 012085 419 QY 420 (471)
Q Consensus 419 ~~ 420 (471)
.+
T Consensus 126 ~A 127 (181)
T PF09439_consen 126 TA 127 (181)
T ss_dssp T-
T ss_pred cc
Confidence 64
No 281
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.32 E-value=9.9e-12 Score=117.88 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEE-EEEEEEe-cCC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYF-DSK 342 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi-~~~~~~~-~~~ 342 (471)
..++++|||..++|||.|+-.++. ..++.+..+.+.- ....... +..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~-------------------------------~~fp~~yvPTVFdnys~~v~V~dg~ 51 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT-------------------------------NAFPEEYVPTVFDNYSANVTVDDGK 51 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc-------------------------------CcCcccccCeEEccceEEEEecCCC
Confidence 457899999999999999988762 1222233332220 1111223 355
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHH-HHHHHHHHhc-CCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSF-GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~-~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||+||++|...+...+..+|++|++++...+.+ +.... +|+.++.... ++| +|+|++|.||...
T Consensus 52 ~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S------~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d 124 (198)
T KOG0393|consen 52 PVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES------FENVKSKWIPEIKHHCPNVP-IILVGTKADLRDD 124 (198)
T ss_pred EEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh------HHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhC
Confidence 6779999999999998877678889999999999987733 33333 4444444333 345 9999999999842
Q ss_pred ChhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
....+.+ .++...+.+++|. ..++++||++..|+.+.|+.
T Consensus 125 -~~~~~~l~~~~~~~Vt~~~g~~lA~~iga----~~y~EcSa~tq~~v~~vF~~ 173 (198)
T KOG0393|consen 125 -PSTLEKLQRQGLEPVTYEQGLELAKEIGA----VKYLECSALTQKGVKEVFDE 173 (198)
T ss_pred -HHHHHHHHhccCCcccHHHHHHHHHHhCc----ceeeeehhhhhCCcHHHHHH
Confidence 1111111 1233444444553 46799999999999988765
No 282
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.31 E-value=7e-12 Score=111.89 Aligned_cols=154 Identities=20% Similarity=0.260 Sum_probs=107.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-C
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 342 (471)
.+.++|+++|-.++|||||+..|.++.... .-++.|+.+ ..++. .
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~h------------------------------ltpT~GFn~----k~v~~~g 60 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRH------------------------------LTPTNGFNT----KKVEYDG 60 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhh------------------------------ccccCCcce----EEEeecC
Confidence 567899999999999999999998532211 111233322 22333 3
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~ 419 (471)
..++++||..|+...+..+..|+...|++|||||+++.- .+.....+..+++.+. .+| +.|..||.|++.
T Consensus 61 ~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k------rfeE~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 61 TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK------RFEEISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH------hHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 478999999999999999999999999999999987542 2334555555555543 445 899999999974
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+ ...++ +...+.-.+.+...+.|-.+||++++|+....+
T Consensus 134 a--a~~ee----ia~klnl~~lrdRswhIq~csals~eg~~dg~~ 172 (185)
T KOG0074|consen 134 A--AKVEE----IALKLNLAGLRDRSWHIQECSALSLEGSTDGSD 172 (185)
T ss_pred h--cchHH----HHHhcchhhhhhceEEeeeCccccccCccCcch
Confidence 3 22222 222333345555678899999999999987543
No 283
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.31 E-value=4.2e-11 Score=116.96 Aligned_cols=153 Identities=18% Similarity=0.296 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCeEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNYHV 346 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~l 346 (471)
||+++|..++||||+.+.+.+...... ....|.|..+....+. .....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d------------------------------T~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD------------------------------TLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG------------------------------GGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh------------------------------ccccCCcCCceEEEEecCCCcEE
Confidence 699999999999999999985332111 1124556655555554 456799
Q ss_pred EEEeCCCCCCchhhh-----hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-CeEEEEEeCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNM-----ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMDAVQY 420 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~-----~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-p~IIVVvNKiDl~~~ 420 (471)
.|||+||+..+...+ ...++.+.++|||+|+.......++ ......+..+.+.+. -.+.|+++|+|++..
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l----~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDL----AYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHH----HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHH----HHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 999999998877653 4557889999999999944222222 233344444444332 248999999999853
Q ss_pred C--hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC
Q 012085 421 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (471)
Q Consensus 421 ~--~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG 456 (471)
. .+.++.+.+.+...+...+.. .+.++.+|..+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~--~~~~~~TSI~D~ 162 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE--DITFFLTSIWDE 162 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T--SEEEEEE-TTST
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc--ceEEEeccCcCc
Confidence 2 344667777788887776653 578999999874
No 284
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=8.9e-12 Score=122.70 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=99.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEE-EEEecC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA-VAYFDS 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~-~~~~~~ 341 (471)
.+++++|.|+|.+|+|||||||+|+......... -|++.+.. .....+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-------------------------------vg~~t~~~~~~~~~~ 84 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-------------------------------VGVGTDITTRLRLSY 84 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeee-------------------------------cccCCCchhhHHhhc
Confidence 5678899999999999999999999432222111 01111000 011223
Q ss_pred CCeEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-CeEEEEEe
Q 012085 342 KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVN 413 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-p~IIVVvN 413 (471)
....++||||||..+ +...+..++...|.+++++++.++ .......+++-+..... .++|+++|
T Consensus 85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dr--------aL~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDR--------ALGTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCc--------cccCCHHHHHHHHHhccCceeEEEEe
Confidence 457899999999665 777788899999999999999976 22333333333333332 45999999
Q ss_pred CCCCCCCC--------------hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 414 KMDAVQYS--------------KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 414 KiDl~~~~--------------~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.+|+.... .+.+++-.+.+.+++.. -.+++.++++.+.|+.+.
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~------V~pV~~~~~r~~wgl~~l 213 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE------VKPVVAVSGRLPWGLKEL 213 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh------cCCeEEeccccCccHHHH
Confidence 99986421 12233334444555443 237889999999998764
No 285
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.6e-12 Score=127.34 Aligned_cols=184 Identities=24% Similarity=0.318 Sum_probs=121.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhcccccccccc-ccceEEEEEE----
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEER-ERGITMTVAV---- 336 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~-~~GiTi~~~~---- 336 (471)
.++..++|+-+|++.+||||++.++.|-... ..+.+-+.+++-+-.++.+.......... .++.-.....
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~Tv-----rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d 108 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVHTV-----RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKED 108 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccceEE-----EehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCC
Confidence 4677899999999999999999999863211 11122222222222222121111111000 0000000000
Q ss_pred -EEecC---C-----CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCe
Q 012085 337 -AYFDS---K-----NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (471)
Q Consensus 337 -~~~~~---~-----~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~ 407 (471)
..++. . -+++.|+|+|||.-++..|+.+....|+++|+|.++... -+.|+.||+....-+..++
T Consensus 109 ~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-------PQPQTsEHLaaveiM~Lkh 181 (466)
T KOG0466|consen 109 RPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-------PQPQTSEHLAAVEIMKLKH 181 (466)
T ss_pred CCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-------CCCchhhHHHHHHHhhhce
Confidence 00000 0 146889999999999999999999999999999998663 3679999999988888889
Q ss_pred EEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 408 IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
+|++-||+|++. +.+..+-.+++.+++.... ....+|+|+||.-+.||+-
T Consensus 182 iiilQNKiDli~--e~~A~eq~e~I~kFi~~t~--ae~aPiiPisAQlkyNId~ 231 (466)
T KOG0466|consen 182 IIILQNKIDLIK--ESQALEQHEQIQKFIQGTV--AEGAPIIPISAQLKYNIDV 231 (466)
T ss_pred EEEEechhhhhh--HHHHHHHHHHHHHHHhccc--cCCCceeeehhhhccChHH
Confidence 999999999994 4444555667777775443 3567999999999999864
No 286
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.8e-11 Score=131.20 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=103.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe--
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-- 339 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-- 339 (471)
...+.++|+++|+-.+|||+|+..|..+......+. .-+-..+.+....++++|.++......+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~--------------~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l 189 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKN--------------TEADLRYTDTLFYEQERGCSIKSTPVTLVL 189 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceecccccccc--------------ccccccccccchhhHhcCceEeecceEEEE
Confidence 345678999999999999999999987655222111 1111245677778888998875443332
Q ss_pred ---cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 340 ---DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 340 ---~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
....+.++|+|||||.+|..++...++.+|++++|||+..| +.-++..++..+.+...| +++|+||+|
T Consensus 190 ~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EG--------VmlntEr~ikhaiq~~~~-i~vviNKiD 260 (971)
T KOG0468|consen 190 SDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEG--------VMLNTERIIKHAIQNRLP-IVVVINKVD 260 (971)
T ss_pred ecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccC--------ceeeHHHHHHHHHhccCc-EEEEEehhH
Confidence 33557899999999999999999999999999999999988 445667777777777777 999999999
Q ss_pred CC
Q 012085 417 AV 418 (471)
Q Consensus 417 l~ 418 (471)
++
T Consensus 261 RL 262 (971)
T KOG0468|consen 261 RL 262 (971)
T ss_pred HH
Confidence 75
No 287
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=9.6e-12 Score=111.31 Aligned_cols=153 Identities=22% Similarity=0.182 Sum_probs=105.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|.++|..|+||+|++-+|---.+.. .-.|+......+.+++.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt----------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT----------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc----------------------------------cCCCCCcCccccccccc
Confidence 55789999999999999998875211111 11122333334556888
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC--CeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--DQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v--p~IIVVvNKiDl~~~~~ 422 (471)
.+++||..|+-.+.+.+..++...|++|||||.++. +.+.....++..++.+... -.++|++||+|......
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~------dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t 136 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDR------DRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT 136 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccch------hhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh
Confidence 999999999999999999999999999999999865 3344455666666654322 23889999999864311
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+....|......+..++||..||.+|+|++++.
T Consensus 137 ------~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 137 ------RSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred ------HHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 11122222222223345799999999999999753
No 288
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.23 E-value=6.2e-11 Score=121.03 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=29.3
Q ss_pred CeEEEEEeCCCCC----C---chhhhhhccccCCEEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHK----D---FVPNMISGATQSDAAILVIDASV 379 (471)
Q Consensus 343 ~~~l~LIDTPG~e----~---f~~~~~~~l~~aD~vIlVVDas~ 379 (471)
...++||||||+. . +...++..++.+|++|+|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3579999999962 2 33456678999999999999974
No 289
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.22 E-value=1.4e-12 Score=127.89 Aligned_cols=112 Identities=13% Similarity=0.260 Sum_probs=60.2
Q ss_pred EEEEEeCCCCCCchhhhhh------cc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVPNMIS------GA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~------~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.|+|||||.++...+.. .+ ...-++|+++|+..- .+...+.......+..+..++.| .|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~---~~~~~f~s~~L~s~s~~~~~~lP-~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC---SDPSKFVSSLLLSLSIMLRLELP-HVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG----SSHHHHHHHHHHHHHHHHHHTSE-EEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc---cChhhHHHHHHHHHHHHhhCCCC-EEEeeeccC
Confidence 7999999998876544432 33 345688999999844 22333434444445555567887 899999999
Q ss_pred CCCCChh----------h--------HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 417 AVQYSKD----------R--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 417 l~~~~~e----------~--------~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+.....+ . .......+..++.+++. ...|+|+|+.+++|+.++.
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTTTTHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCChHHHHHHH
Confidence 9852111 0 12223334444433332 1279999999999998754
No 290
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.20 E-value=3.9e-11 Score=122.92 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=66.1
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..++||||+|...-... ....+|.+|+|++...+ +.++......++++ -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~g------d~iq~~k~gi~E~a-------DIiVVNKaDl~~~ 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAG------DELQGIKKGIMELA-------DLIVINKADGDNK 209 (332)
T ss_pred ccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCch------HHHHHHHhhhhhhh-------heEEeehhcccch
Confidence 35678999999996532222 35569999999875544 11323222222222 3899999999843
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.....+...+...... ....+|+++||++|.||.++.+
T Consensus 210 --~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 --TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred --hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 23344555566555432211 1224899999999999998654
No 291
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.19 E-value=5.5e-10 Score=110.39 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=73.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
+....++|+|+|.+|+|||||+|+|++........ ..+.|..........
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~------------------------------~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSA------------------------------FQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC------------------------------CCCceEEEEEEEEEE
Confidence 34567899999999999999999999743221110 012233333333445
Q ss_pred CCeEEEEEeCCCCCCch------hh----hhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCC---
Q 012085 342 KNYHVVVLDSPGHKDFV------PN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV--- 405 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~------~~----~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~v--- 405 (471)
.+..+.||||||..+.. .. ...++. ..|++|||....... +.......++.+.. ++.
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r-------~~~~d~~llk~I~e~fG~~i~ 149 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYR-------RDYLDLPLLRAITDSFGPSIW 149 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhChhhH
Confidence 67889999999966542 11 122232 578888887555321 12233334443333 332
Q ss_pred CeEEEEEeCCCCCC
Q 012085 406 DQLIVAVNKMDAVQ 419 (471)
Q Consensus 406 p~IIVVvNKiDl~~ 419 (471)
.++|||+||+|...
T Consensus 150 ~~~ivV~T~~d~~~ 163 (249)
T cd01853 150 RNAIVVLTHAASSP 163 (249)
T ss_pred hCEEEEEeCCccCC
Confidence 25999999999864
No 292
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=115.51 Aligned_cols=84 Identities=26% Similarity=0.335 Sum_probs=61.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.-+|++||.|++|||||+++|++....+.. ...+..+..+|+ +++.+..
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~-----------------------y~FTTl~~VPG~--------l~Y~ga~ 111 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVAD-----------------------YPFTTLEPVPGM--------LEYKGAQ 111 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccc-----------------------cCceecccccce--------EeecCce
Confidence 356999999999999999999963332221 112223333443 7789999
Q ss_pred EEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCC
Q 012085 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 346 l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (471)
++|+|+||... -..+.++.++.||.+|+|+|+...
T Consensus 112 IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 112 IQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred EEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 99999999432 235678889999999999999855
No 293
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.5e-10 Score=110.02 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=79.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
..|.++|..++|||+|+-.|+..... ..-..+......+......+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----------------------------------~TvtSiepn~a~~r~gs~~~ 84 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----------------------------------GTVTSIEPNEATYRLGSENV 84 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----------------------------------CeeeeeccceeeEeecCcce
Confidence 45999999999999999998832100 01111222223344555668
Q ss_pred EEEeCCCCCCchhhhhhccc---cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCCCCC
Q 012085 347 VVLDSPGHKDFVPNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~---~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiDl~~ 419 (471)
.|||.|||.+.+.....++. .+-++|||||+..- ...+......+..++... +.+|++|+.||.|+..
T Consensus 85 ~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f-----~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 85 TLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF-----LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEeCCCcHHHHHHHHHHccccccceeEEEEEecccc-----chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 99999999999999888887 69999999999843 122344444445554433 4457999999999975
Q ss_pred CC
Q 012085 420 YS 421 (471)
Q Consensus 420 ~~ 421 (471)
+.
T Consensus 160 Ak 161 (238)
T KOG0090|consen 160 AK 161 (238)
T ss_pred cC
Confidence 43
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.13 E-value=1.2e-10 Score=120.61 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=82.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
..+++|+|+|.+|+|||||||+|.|....-... ...| . .+ .|.... .+..+
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~a---------A~tG---------v----~e----tT~~~~--~Y~~p~ 84 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGA---------APTG---------V----VE----TTMEPT--PYPHPK 84 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS-----------SS---------S----HS----CCTS-E--EEE-SS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCc---------CCCC---------C----Cc----CCCCCe--eCCCCC
Confidence 356789999999999999999998632110000 0000 0 00 011111 11112
Q ss_pred CeEEEEEeCCCCCC--chhh-h--hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKD--FVPN-M--ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~--f~~~-~--~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
--.++|||.||... |... + .-.+...|.+|+|.+.. +.....+++..++.++.+ +++|-+|+|.
T Consensus 85 ~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTKvD~ 153 (376)
T PF05049_consen 85 FPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTKVDS 153 (376)
T ss_dssp -TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--HHH
T ss_pred CCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEecccc
Confidence 23599999999432 2211 1 12466789877776554 556777788888888887 9999999996
Q ss_pred -C---------CCC-hhhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc
Q 012085 418 -V---------QYS-KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 418 -~---------~~~-~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt 455 (471)
+ ... +..++++++...+.|...|...+ +||-||..+
T Consensus 154 Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P--~VFLVS~~d 200 (376)
T PF05049_consen 154 DLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEP--QVFLVSSFD 200 (376)
T ss_dssp HHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS----EEEB-TTT
T ss_pred cHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcC--ceEEEeCCC
Confidence 1 011 23467788888888887777554 779999875
No 295
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.13 E-value=5.9e-10 Score=117.06 Aligned_cols=36 Identities=31% Similarity=0.344 Sum_probs=28.8
Q ss_pred eEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCC
Q 012085 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASV 379 (471)
Q Consensus 344 ~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~ 379 (471)
..++||||||... +...++..++.+|++++|+|+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5689999999532 44466777999999999999973
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.13 E-value=1.1e-10 Score=106.80 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=44.0
Q ss_pred CCeEEEEEeCCCCCC----chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKD----FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~----f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
....+.||||||... ....+..++..+|++|||+++.+... ......+.+....... .+|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~-~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKS-RTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCS-SEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCC-eEEEEEcCC
Confidence 446799999999532 33556778899999999999997621 1223333344443443 499999995
No 297
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.11 E-value=7.7e-10 Score=111.99 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=70.3
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
......++|+|+|.+|+|||||+|+|++......... . ..+.+.. .....
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-------------------------~---s~t~~~~--~~~~~ 82 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-------------------------Q---SEGLRPM--MVSRT 82 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-------------------------C---CcceeEE--EEEEE
Confidence 3445678999999999999999999997543221110 0 0011111 11122
Q ss_pred CCCeEEEEEeCCCCCCch---hhhhhcc------ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCC---Ce
Q 012085 341 SKNYHVVVLDSPGHKDFV---PNMISGA------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQ 407 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~---~~~~~~l------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~v---p~ 407 (471)
..+..+.||||||..+.. ......+ ..+|++|||......- +....+..++.+.. +|. .+
T Consensus 83 ~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-------~~~~DkqlLk~Iqe~FG~~iw~~ 155 (313)
T TIGR00991 83 RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-------VDTLDGQVIRAITDSFGKDIWRK 155 (313)
T ss_pred ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-------CCHHHHHHHHHHHHHhhhhhhcc
Confidence 367899999999976532 1112222 2599999995543210 11222333333322 221 35
Q ss_pred EEEEEeCCCCCC
Q 012085 408 LIVAVNKMDAVQ 419 (471)
Q Consensus 408 IIVVvNKiDl~~ 419 (471)
+|||+|+.|...
T Consensus 156 ~IVVfTh~d~~~ 167 (313)
T TIGR00991 156 SLVVLTHAQFSP 167 (313)
T ss_pred EEEEEECCccCC
Confidence 999999999774
No 298
>PRK13768 GTPase; Provisional
Probab=99.10 E-value=2.1e-10 Score=113.51 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCCCCch------hhhhhcccc--CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 343 NYHVVVLDSPGHKDFV------PNMISGATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~------~~~~~~l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
+..+.||||||+.++. ..+...+.. ++++|+|+|+..+....++ .......+......++| +|+|+||
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~---~~~~~l~~~~~~~~~~~-~i~v~nK 171 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDF---VSLLLLALSVQLRLGLP-QIPVLNK 171 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHH---HHHHHHHHHHHHHcCCC-EEEEEEh
Confidence 3479999999975532 222333333 8999999999765221111 11111111111245666 8999999
Q ss_pred CCCCCCChhhHHHHHHHHH------------------------HHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 415 MDAVQYSKDRFDSIKVQLG------------------------TFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~------------------------~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+|+..... .+.....+. +.++..+ ...+|+++||++++|+.++.
T Consensus 172 ~D~~~~~~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~~gl~~L~ 239 (253)
T PRK13768 172 ADLLSEEE--LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTGEGFDELY 239 (253)
T ss_pred HhhcCchh--HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCCcCHHHHH
Confidence 99985321 122222111 1222333 23578999999999998753
No 299
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=4.9e-10 Score=104.64 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=109.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
....+++++|..|.||+|++++.+- ...........|+.............
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~lt-----------------------------geFe~~y~at~Gv~~~pl~f~tn~g~ 58 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLT-----------------------------GEFEKTYPATLGVEVHPLLFDTNRGQ 58 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhc-----------------------------ccceecccCcceeEEeeeeeecccCc
Confidence 4578999999999999999999871 11122223344554444433334445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..|..|||+|++.+......++-+..++|+++|++...+ +....+++-++++..+.-||++++||.|.....
T Consensus 59 irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t------~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~-- 130 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT------YKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK-- 130 (216)
T ss_pred EEEEeeecccceeecccccccEEecceeEEEeeeeehhh------hhcchHHHHHHHHHhcCCCeeeeccceeccccc--
Confidence 899999999999999999999999999999999997644 556667888887765443399999999976321
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
++..--.+. ...+++++.+||+.+.|...+|
T Consensus 131 ----~k~k~v~~~-----rkknl~y~~iSaksn~NfekPF 161 (216)
T KOG0096|consen 131 ----VKAKPVSFH-----RKKNLQYYEISAKSNYNFERPF 161 (216)
T ss_pred ----cccccceee-----ecccceeEEeecccccccccch
Confidence 111111111 1235688999999999998876
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=99.05 E-value=2.1e-09 Score=112.27 Aligned_cols=84 Identities=20% Similarity=0.105 Sum_probs=56.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
...++|+|||.||+|||||+|+|++....+.. .++.|+......+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n-------------------------------~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAEN-------------------------------FPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccC-------------------------------CCCCcccceEEEEeccc
Confidence 34567999999999999999999864332211 1222322222112111
Q ss_pred ----------------CeEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCC
Q 012085 343 ----------------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 343 ----------------~~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas 378 (471)
...+.|+||||... +...++..++.+|++|+|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 34589999999432 4456677889999999999984
No 301
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.05 E-value=3.9e-10 Score=120.20 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=104.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.+||+|+|..|+||||||-+|+...-...-+ .+...+++- ..+...
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP----------------------------~rl~~i~IP---advtPe 54 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVP----------------------------RRLPRILIP---ADVTPE 54 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhcccccc----------------------------ccCCccccC---CccCcC
Confidence 4567899999999999999999999543211110 011112221 112234
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC---C-CeEEEEEeCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG---V-DQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~---v-p~IIVVvNKiDl~ 418 (471)
.....|+||+-..+-.......++.||++.+|+++++..+ +......|+.++++.. . .|||+|+||+|..
T Consensus 55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T------~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~ 128 (625)
T KOG1707|consen 55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST------VDRISTKWLPLIRQLFGDYHETPVILVGNKSDNG 128 (625)
T ss_pred cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH------hhhhhhhhhhhhhcccCCCccCCEEEEeeccCCc
Confidence 4558999999877777777889999999999999987632 4455666777787765 2 2599999999998
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.......+....-|...+++.. .-|.|||++-.++.+.|
T Consensus 129 ~~~~~s~e~~~~pim~~f~EiE------tciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 129 DNENNSDEVNTLPIMIAFAEIE------TCIECSALTLANVSELF 167 (625)
T ss_pred cccccchhHHHHHHHHHhHHHH------HHHhhhhhhhhhhHhhh
Confidence 6544322221222222222211 33889999988888765
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.02 E-value=5.2e-10 Score=107.04 Aligned_cols=99 Identities=10% Similarity=0.098 Sum_probs=58.5
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..+.||+|.|.-.... ......+..+.|+|+..+.. ... ... ...+.+ .++++||+|+.....
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~--------~~~-~~~---~~~~~a-~iiv~NK~Dl~~~~~ 165 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDD--------KPL-KYP---GMFKEA-DLIVINKADLAEAVG 165 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccc--------hhh-hhH---hHHhhC-CEEEEEHHHccccch
Confidence 45889999999311111 11123566678999985511 011 111 122334 799999999975322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+.+.++++ . +.++|+++||++|.|+.+++.
T Consensus 166 ~~~~~~~~~l~~~----~---~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 166 FDVEKMKADAKKI----N---PEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred hhHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHHHHH
Confidence 2233344444332 2 346899999999999998754
No 303
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.00 E-value=1.2e-09 Score=104.41 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=60.3
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
...++||+|.|..- ..... ...+|.+|.|+|+..+.. ........+. .- =++++||+|+.....
T Consensus 91 ~~D~iiIEt~G~~l-~~~~~--~~l~~~~i~vvD~~~~~~---------~~~~~~~qi~---~a-d~~~~~k~d~~~~~~ 154 (199)
T TIGR00101 91 PLEMVFIESGGDNL-SATFS--PELADLTIFVIDVAAGDK---------IPRKGGPGIT---RS-DLLVINKIDLAPMVG 154 (199)
T ss_pred CCCEEEEECCCCCc-ccccc--hhhhCcEEEEEEcchhhh---------hhhhhHhHhh---hc-cEEEEEhhhcccccc
Confidence 46788999999321 11111 122688999999996621 1111111111 11 278999999984323
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..++.+.+.++.+ + +..+++++||++|+||.+.++
T Consensus 155 ~~~~~~~~~~~~~----~---~~~~i~~~Sa~~g~gi~el~~ 189 (199)
T TIGR00101 155 ADLGVMERDAKKM----R---GEKPFIFTNLKTKEGLDTVID 189 (199)
T ss_pred ccHHHHHHHHHHh----C---CCCCEEEEECCCCCCHHHHHH
Confidence 3444455555554 2 357899999999999998764
No 304
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.00 E-value=1.4e-09 Score=104.56 Aligned_cols=135 Identities=22% Similarity=0.300 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+||||++|.|+|........ ....+|...........+..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~-----------------------------~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGS-----------------------------SAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--T-----------------------------TTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecc-----------------------------ccCCcccccceeeeeecceEE
Confidence 579999999999999999999754322110 001122222223335678899
Q ss_pred EEEeCCCCCCc-------hhhhh----hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCC---CeEEEE
Q 012085 347 VVLDSPGHKDF-------VPNMI----SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIVA 411 (471)
Q Consensus 347 ~LIDTPG~e~f-------~~~~~----~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~v---p~IIVV 411 (471)
+||||||.-+. ...+. .....+|++|||+... . +....+..++.+.. +|. +++|||
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r--------~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-R--------FTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B---------SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-c--------chHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 99999994331 11122 2345699999999998 3 22333333433332 332 368999
Q ss_pred EeCCCCCCCChhhHHHHH-----HHHHHHHHhcCC
Q 012085 412 VNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGF 441 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~-----~~L~~~l~~~g~ 441 (471)
++..|...... +++.. ..|..+++.++-
T Consensus 123 fT~~d~~~~~~--~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 123 FTHADELEDDS--LEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp EEEGGGGTTTT--HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcccccccc--HHHHHhccCchhHhHHhhhcCC
Confidence 99999875432 22222 347777777764
No 305
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.00 E-value=7.6e-10 Score=116.14 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=98.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.....+++|+|.+|+|||||+|.++.....+ .+....|..+...++++.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvev-------------------------------qpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEV-------------------------------QPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccccc-------------------------------CCcccccchhhhhhhhhh
Confidence 3445679999999999999999987321111 112333445556667777
Q ss_pred CeEEEEEeCCCCCC-----ch-hhhh--hcc-ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 343 NYHVVVLDSPGHKD-----FV-PNMI--SGA-TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 343 ~~~l~LIDTPG~e~-----f~-~~~~--~~l-~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
-..++++||||.-+ .. -++. .++ +.-.+|||+.|.+..+ +. ++..|...+-.+-..+..+++|+|+|
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~C---Gy-Sva~QvkLfhsIKpLFaNK~~IlvlN 289 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMC---GY-SVAAQVKLYHSIKPLFANKVTILVLN 289 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhh---CC-CHHHHHHHHHHhHHHhcCCceEEEee
Confidence 88999999999432 11 1111 121 2244688999998431 11 13344444333333344445999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|+|+... +.+.+-.+.|.+.+.+.+ ++.++.+|..+.+|+++.
T Consensus 290 K~D~m~~--edL~~~~~~ll~~~~~~~----~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 290 KIDAMRP--EDLDQKNQELLQTIIDDG----NVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred cccccCc--cccCHHHHHHHHHHHhcc----CceEEEecccchhceeeH
Confidence 9999853 333333334444443332 478999999999999874
No 306
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.00 E-value=2.8e-09 Score=96.75 Aligned_cols=161 Identities=14% Similarity=0.174 Sum_probs=119.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.-.++|+++|++..|||||+-...+..- ........|+...-....+....
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~-----------------------------de~~~q~~GvN~mdkt~~i~~t~ 68 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEY-----------------------------DEEYTQTLGVNFMDKTVSIRGTD 68 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchh-----------------------------HHHHHHHhCccceeeEEEecceE
Confidence 3457899999999999999998874211 01112345565555555666677
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeE-EEEEeCCCCCC-CC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL-IVAVNKMDAVQ-YS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~I-IVVvNKiDl~~-~~ 421 (471)
..+.|||..|+++|..+..-....+-++||++|.+++.+ + ...+++.++++.++...+ |+|++|.|+.- -+
T Consensus 69 IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------L-nSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp 141 (205)
T KOG1673|consen 69 ISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------L-NSIKEWYRQARGLNKTAIPILVGTKYDLFIDLP 141 (205)
T ss_pred EEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------H-HHHHHHHHHHhccCCccceEEeccchHhhhcCC
Confidence 889999999999999998888889999999999998743 2 445677788877654211 88999999642 23
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+..+.+..+.+++.+.++ .+.|.+|+-+..||.+.|..
T Consensus 142 ~e~Q~~I~~qar~YAk~mn-----AsL~F~Sts~sINv~KIFK~ 180 (205)
T KOG1673|consen 142 PELQETISRQARKYAKVMN-----ASLFFCSTSHSINVQKIFKI 180 (205)
T ss_pred HHHHHHHHHHHHHHHHHhC-----CcEEEeeccccccHHHHHHH
Confidence 4555677778888877665 46799999999999887654
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.00 E-value=2e-09 Score=108.96 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..++.++|+||||.- ......+..+|.++++.....+ +.+.... .-+ ...+ .++|+||+|+...
T Consensus 124 ~~g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~~~------~el~~~~----~~l--~~~~-~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 124 AAGYDVIIVETVGVG---QSEVDIANMADTFVVVTIPGTG------DDLQGIK----AGL--MEIA-DIYVVNKADGEGA 187 (300)
T ss_pred hCCCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCCcc------HHHHHHH----HHH--hhhc-cEEEEEcccccch
Confidence 357899999999953 2223346678998888655533 1111111 111 2344 7999999999853
Q ss_pred ChhhHHHHHHHH----HHHHHh-cCCCCCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQL----GTFLRS-CGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L----~~~l~~-~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.. ...+...+ ..+... .++ ..+++++||++|+||.++.
T Consensus 188 ~~--~~~~~~~~~~~l~~l~~~~~~~---~~~v~~iSA~~g~Gi~~L~ 230 (300)
T TIGR00750 188 TN--VTIARLMLALALEEIRRREDGW---RPPVLTTSAVEGRGIDELW 230 (300)
T ss_pred hH--HHHHHHHHHHHHhhccccccCC---CCCEEEEEccCCCCHHHHH
Confidence 21 11112111 221111 122 2368999999999998864
No 308
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.9e-09 Score=98.90 Aligned_cols=158 Identities=17% Similarity=0.073 Sum_probs=100.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.-+++++|--|+|||||++.|-...-..-.+ |.......+...+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----------------------------------TlHPTSE~l~Ig~m 64 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----------------------------------TLHPTSEELSIGGM 64 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCC----------------------------------CcCCChHHheecCc
Confidence 34579999999999999999997321111111 11111112445778
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.++.+|..||..-+..+..++..+|++|++||+.+. +.+.+...+.-.++.. ..+| +++..||||.+.+.
T Consensus 65 ~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~------er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 65 TFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQ------ERFAESKKELDALLSDESLATVP-FLILGNKIDIPYAA 137 (193)
T ss_pred eEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhH------HHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCCcc
Confidence 899999999999999999999999999999999865 3344444443333322 3556 89999999998754
Q ss_pred hhhHHHHHHHHHHHHHhcC------CCCCCccEEEEecccCCCccccC
Q 012085 422 KDRFDSIKVQLGTFLRSCG------FKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g------~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.+.--.....+.......+ .....+.++.||...+.|..+.|
T Consensus 138 se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~f 185 (193)
T KOG0077|consen 138 SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGF 185 (193)
T ss_pred cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceee
Confidence 2221111222222222111 11122467888998888877665
No 309
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.97 E-value=4.5e-09 Score=103.28 Aligned_cols=69 Identities=16% Similarity=0.159 Sum_probs=49.1
Q ss_pred CeEEEEEeCCCCCC-------------chhhhhhcccc-CCEEEEEEeCCCCccccccchhhhHH-HHHHHHHHhcCCCe
Q 012085 343 NYHVVVLDSPGHKD-------------FVPNMISGATQ-SDAAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (471)
Q Consensus 343 ~~~l~LIDTPG~e~-------------f~~~~~~~l~~-aD~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~vp~ 407 (471)
-..++|+||||... ...++..++.. .+++|+|+|+..+ +..+. .++++.+...+.+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d--------~~~~d~l~ia~~ld~~~~r- 194 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD--------LANSDALKLAKEVDPQGER- 194 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC--------CCchhHHHHHHHHHHcCCc-
Confidence 36899999999642 22335566774 5689999999865 22333 4666777777776
Q ss_pred EEEEEeCCCCCCC
Q 012085 408 LIVAVNKMDAVQY 420 (471)
Q Consensus 408 IIVVvNKiDl~~~ 420 (471)
+|+|+||+|+...
T Consensus 195 ti~ViTK~D~~~~ 207 (240)
T smart00053 195 TIGVITKLDLMDE 207 (240)
T ss_pred EEEEEECCCCCCc
Confidence 9999999999854
No 310
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=3.2e-09 Score=111.19 Aligned_cols=132 Identities=28% Similarity=0.452 Sum_probs=102.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-- 340 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-- 340 (471)
+...+++.|+.++++|||||...|....+.+.... .|. ..+++....++++|+|+....+.+.
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aGe-----~Rf~DtRkDEQeR~iTIKStAISl~~e 80 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AGE-----TRFTDTRKDEQERGITIKSTAISLFFE 80 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cCC-----ccccccccchhhcceEeeeeeeeehhh
Confidence 34567899999999999999999997766554321 112 2357788889999999865555432
Q ss_pred --------------CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC
Q 012085 341 --------------SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (471)
Q Consensus 341 --------------~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp 406 (471)
..+..+.|||.|||.+|..+....++..|++++|+|.-.|.+ -|++-.+.++....++
T Consensus 81 ~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC--------VQTETVLrQA~~ERIk 152 (842)
T KOG0469|consen 81 MSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC--------VQTETVLRQAIAERIK 152 (842)
T ss_pred hhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE--------echHHHHHHHHHhhcc
Confidence 235678999999999999999999999999999999998843 4666667666666666
Q ss_pred eEEEEEeCCCCC
Q 012085 407 QLIVAVNKMDAV 418 (471)
Q Consensus 407 ~IIVVvNKiDl~ 418 (471)
| ++++||+|+.
T Consensus 153 P-vlv~NK~DRA 163 (842)
T KOG0469|consen 153 P-VLVMNKMDRA 163 (842)
T ss_pred c-eEEeehhhHH
Confidence 4 7789999974
No 311
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.97 E-value=5.3e-09 Score=108.26 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-----
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS----- 341 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----- 341 (471)
++|+|||.||+|||||+|+|++....+... ++.|++.....+..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny-------------------------------pftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY-------------------------------PFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc-------------------------------ccccccceEEEEEeccccc
Confidence 579999999999999999999654221111 12221111111111
Q ss_pred ------------CCeEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCC
Q 012085 342 ------------KNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 342 ------------~~~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas 378 (471)
-...+.|+|+||... +...++..++.+|++|+|||+.
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 113699999999432 4456677889999999999985
No 312
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.94 E-value=1.3e-09 Score=104.93 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=101.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-Ce
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~ 344 (471)
..+|.++|.+|+|||++=..+.+...+.. ....|.|+++.+.++.+- +.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D------------------------------~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARD------------------------------TRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhh------------------------------hhccCCcceeeehhhhhhhhh
Confidence 45799999999999999877764322211 123677888888777664 47
Q ss_pred EEEEEeCCCCCCchhhhhh-----ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMIS-----GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~-----~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
.+.+||+.|++.|+..... .++..+++|+|+|++....+.++..++...+..+ +....-++++.+.|+|++.
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll---~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALL---QNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHH---hcCCcceEEEEEeechhcc
Confidence 8899999999988777655 4677999999999998877777765543333322 2222225899999999985
Q ss_pred CCh--hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC
Q 012085 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN 456 (471)
Q Consensus 420 ~~~--e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG 456 (471)
... ..+++-.+.+..+-..++ ...+|+|.++.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~-----~~~f~TsiwDe 164 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE-----CKCFPTSIWDE 164 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc-----ccccccchhhH
Confidence 332 223333333333322222 45688887654
No 313
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.92 E-value=1.8e-09 Score=106.50 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=103.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.+.++++|.+|+|||+|||.|+....... . .....|.|..+.+.. -
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~-------------t---------------~k~K~g~Tq~in~f~---v 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIAD-------------T---------------SKSKNGKTQAINHFH---V 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhh-------------h---------------cCCCCccceeeeeee---c
Confidence 34568899999999999999999985322110 0 011355555554433 3
Q ss_pred CeEEEEEeCCCC----------CCchhhhhhc---cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEE
Q 012085 343 NYHVVVLDSPGH----------KDFVPNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (471)
Q Consensus 343 ~~~l~LIDTPG~----------e~f~~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~II 409 (471)
+..+.++|.||. .++......| -+..-.+.+++|+..+ ++..+...++++.+.++| +.
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~--------i~~~D~~~i~~~ge~~VP-~t 252 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP--------IQPTDNPEIAWLGENNVP-MT 252 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC--------CCCCChHHHHHHhhcCCC-eE
Confidence 568999999991 1233333333 3445677888999977 667778889999999999 99
Q ss_pred EEEeCCCCCCCCh----hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 410 VAVNKMDAVQYSK----DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 410 VVvNKiDl~~~~~----e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+|+||||....-. .....+...+..+.+ ++-....+|+.+|+.++.|++++.
T Consensus 253 ~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~--~~f~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 253 SVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR--GVFLVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred EeeehhhhhhhccccccCccccceeehhhccc--cceeccCCceeeecccccCceeee
Confidence 9999999863211 111112222222221 112234578899999999999864
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.92 E-value=1.7e-08 Score=105.23 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=83.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccce---EEEE------
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI---TMTV------ 334 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~Gi---Ti~~------ 334 (471)
.-.+-|+|+|+.++|||||||+|.+......-.. .+.+....+.- .....|. |.+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~--~~~k~Ra~DEL-------------pqs~~GktItTTePkfvP~k 79 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISN--EYDKERAQDEL-------------PQSAAGKTIMTTEPKFVPNE 79 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccc--hhHHhHHHhcc-------------CcCCCCCCcccCCCccccCc
Confidence 3457799999999999999999998755443321 11111111111 0111331 1111
Q ss_pred --EEEEecCCCeEEEEEeCCCCCC--------chh-----------------h----hhhccc-cCCEEEEEE-eCCCCc
Q 012085 335 --AVAYFDSKNYHVVVLDSPGHKD--------FVP-----------------N----MISGAT-QSDAAILVI-DASVGS 381 (471)
Q Consensus 335 --~~~~~~~~~~~l~LIDTPG~e~--------f~~-----------------~----~~~~l~-~aD~vIlVV-Das~g~ 381 (471)
.....+.-...+.|+||+|... -.. . +...+. .+++.|+|. |.+-
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi-- 157 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTI-- 157 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCc--
Confidence 1112233457899999999322 101 0 233455 699999998 7752
Q ss_pred cccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 382 FEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 382 ~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
++.....+.......+..++..++| +|+|+||+|-
T Consensus 158 ~dI~Re~y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 158 TDIPREDYVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred cccccccchHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 2333444667778888999999998 9999999994
No 315
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.92 E-value=9.9e-09 Score=93.03 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=94.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEE-EEEEEEecCC-
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM-TVAVAYFDSK- 342 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi-~~~~~~~~~~- 342 (471)
+..+|+|+|.-++|||++|..|++-...+... ...|+ ++....++.+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~r 56 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETDR 56 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecCC
Confidence 45689999999999999999998532222111 11111 2222333332
Q ss_pred --CeEEEEEeCCCCCCc-hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 343 --NYHVVVLDSPGHKDF-VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 --~~~l~LIDTPG~e~f-~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
.-.+.|.||+|.... ...-..++..+|+++||++..+..+ |..+....+++-..-....+| |+|+.||+|+.+
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eS---f~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~ 132 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPES---FQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAE 132 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHH---HHHHHHHHHHHhhcccccccc-EEEEechhhccc
Confidence 346899999997776 3444567788999999999997743 333333334433322223445 999999999964
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.... + ........+. ..+..++++|.+...+.++|
T Consensus 133 p~~v--d--~d~A~~Wa~r-----Ekvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 133 PREV--D--MDVAQIWAKR-----EKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred chhc--C--HHHHHHHHhh-----hheeEEEEEeccchhhhhHH
Confidence 2211 1 1111122211 23566889999888887765
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=3.3e-09 Score=104.37 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=91.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccc-cchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE------
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA------ 337 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~-~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~------ 337 (471)
+...|+|.|.||+|||||+++|.........+ .+.........++..-..-...|..+. ..+++.+.....
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~--~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELS--RDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHH--TSTTEEEEEE---SSHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcC--CCCCEEEeecCcCCCCCC
Confidence 45789999999999999999998654332211 111111222222211111112222111 122332211110
Q ss_pred ----------EecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCe
Q 012085 338 ----------YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (471)
Q Consensus 338 ----------~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~ 407 (471)
.++..++.++||.|.|.-+.- ..-...+|.+++|+-...| .+ ++....-++++.
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~G---D~---iQ~~KaGimEia------- 169 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLG---DE---IQAIKAGIMEIA------- 169 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTC---CC---CCTB-TTHHHH--------
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCc---cH---HHHHhhhhhhhc-------
Confidence 123356889999999843222 2234569999999999877 22 444444444443
Q ss_pred EEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccCC
Q 012085 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 408 IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~~ 464 (471)
=|+|+||.|+..+ +.....++..+....-. ....+++.+||.+|+||.++..
T Consensus 170 Di~vVNKaD~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 170 DIFVVNKADRPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp SEEEEE--SHHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred cEEEEeCCChHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 2789999996532 33444455554432211 1134899999999999998653
No 317
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.86 E-value=1.1e-10 Score=108.65 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=104.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC---C
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK---N 343 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~---~ 343 (471)
.++.|+|.-++|||+++.+.+++.....-+ -.-|+.+.+.. +.+. -
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yR-----------------------------AtIgvdfalkV--l~wdd~t~ 74 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYR-----------------------------ATIGVDFALKV--LQWDDKTI 74 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHH-----------------------------HHHhHHHHHHH--hccChHHH
Confidence 569999999999999999998642211000 00111111111 2222 2
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCC-eEEEEEeCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVD-QLIVAVNKMDAV 418 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp-~IIVVvNKiDl~ 418 (471)
.+++|||.+||++|..++.-+++.++++.+|+|+++..++. ...++.-++-..+ +.| |+|+..||||..
T Consensus 75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe------~~skwkqdldsk~qLpng~Pv~~vllankCd~e 148 (229)
T KOG4423|consen 75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFE------PVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE 148 (229)
T ss_pred HHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccccc------HHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence 46789999999999999999999999999999999885533 3334443333322 222 589999999986
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.. ...+...++..+.++.||. -++++||+.+-|+.|+
T Consensus 149 ~~---a~~~~~~~~d~f~kengf~----gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 149 KS---AKNEATRQFDNFKKENGFE----GWTETSAKENKNIPEA 185 (229)
T ss_pred hH---hhhhhHHHHHHHHhccCcc----ceeeeccccccChhHH
Confidence 43 3334456777888888874 4699999999999876
No 318
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.85 E-value=1.8e-08 Score=101.39 Aligned_cols=145 Identities=19% Similarity=0.260 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--CCC
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKN 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~ 343 (471)
.++|.|+|.+|+|||||||.|++......... .............+......+. ...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47899999999999999999996433222100 0000001112222222222222 234
Q ss_pred eEEEEEeCCCCCCchhh------h--------hhcc-------------ccCCEEEEEEeCCCCccccccchhhhHHHHH
Q 012085 344 YHVVVLDSPGHKDFVPN------M--------ISGA-------------TQSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~------~--------~~~l-------------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~ 396 (471)
..++||||||+.+.... . ..++ ...|+|||+|.++.. .+.....+.
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-------~L~~~Di~~ 135 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-------GLKPLDIEF 135 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-------SS-HHHHHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-------cchHHHHHH
Confidence 67899999994431110 0 0010 238999999998732 134444444
Q ss_pred HHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 012085 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (471)
Q Consensus 397 l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~ 442 (471)
+..+... + ++|-|+.|.|.. ..+.+..++..+...+...++.
T Consensus 136 mk~Ls~~-v-NvIPvIaKaD~l--t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 136 MKRLSKR-V-NVIPVIAKADTL--TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHTTT-S-EEEEEESTGGGS---HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHhccc-c-cEEeEEeccccc--CHHHHHHHHHHHHHHHHHcCce
Confidence 4444332 2 599999999998 5677788888888888877653
No 319
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.85 E-value=2.5e-09 Score=94.00 Aligned_cols=133 Identities=24% Similarity=0.275 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.||++||.+|+|||||.+.|-|....... |.- +++.+ =
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK-----------------------------------TQA-----ve~~d--~ 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK-----------------------------------TQA-----VEFND--K 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc-----------------------------------cce-----eeccC--c
Confidence 36999999999999999999864322111 000 11111 1
Q ss_pred EEEeCCC----CCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 347 VVLDSPG----HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 347 ~LIDTPG----~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
-.||||| |..+....+.....+|++++|-.++++.+. .-..++. .+.+++|-|++|+|+.+ .
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~-----------f~p~f~~-~~~k~vIgvVTK~DLae--d 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR-----------FPPGFLD-IGVKKVIGVVTKADLAE--D 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc-----------CCccccc-ccccceEEEEecccccc--h
Confidence 2589999 555555566677789999999999877321 1112222 23334999999999984 3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.. .+..+++|.+.|- -+||.+|+.++.||.+++
T Consensus 106 ~d----I~~~~~~L~eaGa----~~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 106 AD----ISLVKRWLREAGA----EPIFETSAVDNQGVEELV 138 (148)
T ss_pred Hh----HHHHHHHHHHcCC----cceEEEeccCcccHHHHH
Confidence 33 3455566666673 378999999999998865
No 320
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.4e-08 Score=104.78 Aligned_cols=144 Identities=25% Similarity=0.320 Sum_probs=104.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
..++-|+|||++|+||||||..|+.+.. ..+..+....+|+ .....
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----------------------------k~ti~~i~GPiTv------vsgK~ 112 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------KQTIDEIRGPITV------VSGKT 112 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----------------------------HhhhhccCCceEE------eecce
Confidence 4456788999999999999999983211 1111122233343 34566
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
.+++|+.+|. -...++.....||.+||+||++-| +...+.+++.++...|.|+++-|++..|+... ..
T Consensus 113 RRiTflEcp~---Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV~ThlDlfk~-~s 180 (1077)
T COG5192 113 RRITFLECPS---DLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGVVTHLDLFKN-PS 180 (1077)
T ss_pred eEEEEEeChH---HHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEEEeecccccC-hH
Confidence 7899999993 456677778889999999999977 56688999999999999999999999999853 45
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEeccc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt 455 (471)
.+..+++.|+.-+..--+ +.+.+|.+|...
T Consensus 181 tLr~~KKrlkhRfWtEiy--qGaKlFylsgV~ 210 (1077)
T COG5192 181 TLRSIKKRLKHRFWTEIY--QGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHhhhHHHHHc--CCceEEEecccc
Confidence 567777777665544333 235667777653
No 321
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.1e-08 Score=108.71 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=103.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccc---------------cccccccccc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWAL---------------DESAEERERG 329 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~---------------d~~~~e~~~G 329 (471)
...+|+|.|..++||||++|+++++..+.......++..-......|.-++...- .........+
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 4567999999999999999999998776554433333322222111111110000 0000000000
Q ss_pred eEEEEEEEEecC-----CCeEEEEEeCCCC---CCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH
Q 012085 330 ITMTVAVAYFDS-----KNYHVVVLDSPGH---KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR 401 (471)
Q Consensus 330 iTi~~~~~~~~~-----~~~~l~LIDTPG~---e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~ 401 (471)
.. .+..+.+.. -...+.|+|.||. ..+..+.......+|++|||+.+... +....++++....
T Consensus 188 ~~-sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEnt--------lt~sek~Ff~~vs 258 (749)
T KOG0448|consen 188 AG-SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENT--------LTLSEKQFFHKVS 258 (749)
T ss_pred cc-eEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccH--------hHHHHHHHHHHhh
Confidence 00 011111111 1247899999994 34667777888889999999999865 3333334443333
Q ss_pred hcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc
Q 012085 402 SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 402 ~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt 455 (471)
. +.|.|+|+.||+|.....++..+.++.++..+ .-..+....-.++.|||+.
T Consensus 259 ~-~KpniFIlnnkwDasase~ec~e~V~~Qi~eL-~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 259 E-EKPNIFILNNKWDASASEPECKEDVLKQIHEL-SVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred c-cCCcEEEEechhhhhcccHHHHHHHHHHHHhc-CcccHhhhcCeeEEEeccc
Confidence 3 36789999999999876666667777775522 1122222334689999653
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.81 E-value=3.5e-09 Score=106.41 Aligned_cols=98 Identities=10% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..+.||++.|.-..-..+ .+ ..+.-|.|+++..+.. . ....-.++ ... -++|+||+|++.+.
T Consensus 183 ~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~d-k--------plKyp~~f---~~A-DIVVLNKiDLl~~~ 246 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGED-K--------PLKYPHMF---AAA-SLMLLNKVDLLPYL 246 (290)
T ss_pred cCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccc-c--------chhccchh---hcC-cEEEEEhHHcCccc
Confidence 44578899999952111110 11 1234467788886521 0 01111222 222 58899999998533
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
...++.+.+.++.+. +.++||++||++|+|+++.
T Consensus 247 ~~dle~~~~~lr~ln-------p~a~I~~vSA~tGeGld~L 280 (290)
T PRK10463 247 NFDVEKCIACAREVN-------PEIEIILISATSGEGMDQW 280 (290)
T ss_pred HHHHHHHHHHHHhhC-------CCCcEEEEECCCCCCHHHH
Confidence 334444555554442 4578999999999999874
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.79 E-value=2e-08 Score=100.31 Aligned_cols=183 Identities=18% Similarity=0.247 Sum_probs=99.3
Q ss_pred cCCcccceEEEEEcCCCCCchhHhHHHhhhccccccc-cchhhhHHHhhcCCCccchhccccccccccccceEEEEE---
Q 012085 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA--- 335 (471)
Q Consensus 260 ~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~-~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~--- 335 (471)
....-+...|+|.|.||+|||||+.+|..+......+ .+.........++..-..-...|..... .+++.+...
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~--~~~vFiRs~~sr 122 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAV--DPGVFIRSSPSR 122 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhcc--CCCeEEeecCCC
Confidence 3344566789999999999999999997554321111 0111111111111100000111211111 111111000
Q ss_pred -------------EEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh
Q 012085 336 -------------VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (471)
Q Consensus 336 -------------~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~ 402 (471)
...++-.++.++||.|-|.-+.-.. -...+|.+|+|.=+..| +.++....-++++.
T Consensus 123 G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~G------D~~Q~iK~GimEia-- 191 (323)
T COG1703 123 GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAG------DDLQGIKAGIMEIA-- 191 (323)
T ss_pred ccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCC------cHHHHHHhhhhhhh--
Confidence 0012335688999999994332211 23448999999877766 33555555555544
Q ss_pred cCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHH---HHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 403 FGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTF---LRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 403 ~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~---l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
=|+|+||.|+.++ ...+.++...|... -...+|. .+++.+||.+|+|+.++..
T Consensus 192 -----Di~vINKaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~---ppv~~t~A~~g~Gi~~L~~ 247 (323)
T COG1703 192 -----DIIVINKADRKGA-EKAARELRSALDLLREVWRENGWR---PPVVTTSALEGEGIDELWD 247 (323)
T ss_pred -----heeeEeccChhhH-HHHHHHHHHHHHhhcccccccCCC---CceeEeeeccCCCHHHHHH
Confidence 2789999997643 23344444444443 2334443 4789999999999998654
No 324
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.76 E-value=3.9e-09 Score=99.63 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEE-EEE--E------
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAV--A------ 337 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~-~~~--~------ 337 (471)
++|.|.|++|+|||+||.+++......-...+.+.......+ +..+......+..++... ..+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~D-------a~~l~~~~g~~i~~v~TG~~CH~da~m~~~a 86 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKED-------ADRLRKLPGEPIIGVETGKGCHLDASMNLEA 86 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhh-------HHHHHhCCCCeeEEeccCCccCCcHHHHHHH
Confidence 789999999999999999998654322222111111100000 001111011222222221 110 0
Q ss_pred ----EecCCCeEEEEEeCCCCCCchhhhhhccccCC-EEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 338 ----YFDSKNYHVVVLDSPGHKDFVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 338 ----~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD-~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
........+.||.+.| .+.... .....| .-|+|||++.|.. ..... ..-+.+ .=++|+
T Consensus 87 i~~l~~~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~-~P~K~-------gP~i~~-----aDllVI 149 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGED-IPRKG-------GPGIFK-----ADLLVI 149 (202)
T ss_pred HHHHhhcCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCC-CcccC-------CCceeE-----eeEEEE
Confidence 0112235899999999 222111 112234 8899999998821 11100 000000 127899
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
||+|+..+-...++......++.- +..+||.+|+++|+|+++.
T Consensus 150 nK~DLa~~v~~dlevm~~da~~~n-------p~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 150 NKTDLAPYVGADLEVMARDAKEVN-------PEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred ehHHhHHHhCccHHHHHHHHHHhC-------CCCCEEEEeCCCCcCHHHH
Confidence 999998543333454555555442 6789999999999999875
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=9.6e-08 Score=98.22 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE--E----ec
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA--Y----FD 340 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~--~----~~ 340 (471)
++++|||.||||||||.|+|+.....+..... ...++..|+..-.... . ..
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF-----------------------~TIePN~Giv~v~d~rl~~L~~~~~ 59 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPF-----------------------CTIEPNVGVVYVPDCRLDELAEIVK 59 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCc-----------------------ccccCCeeEEecCchHHHHHHHhcC
Confidence 57999999999999999999954422222211 1112222221100000 0 00
Q ss_pred ----CCCeEEEEEeCCCC-------CCchhhhhhccccCCEEEEEEeCC
Q 012085 341 ----SKNYHVVVLDSPGH-------KDFVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 341 ----~~~~~l~LIDTPG~-------e~f~~~~~~~l~~aD~vIlVVDas 378 (471)
.....+.|+|.+|. +-+...++..++.+|+++.||++.
T Consensus 60 c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 60 CPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred CCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 11235889999993 347888999999999999999997
No 326
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.70 E-value=1.1e-07 Score=104.01 Aligned_cols=118 Identities=18% Similarity=0.133 Sum_probs=68.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+|.|++........ ...+.|. .........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss-----------------------------~~~~TTr-~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDA-----------------------------FGMGTTS-VQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccC-----------------------------CCCCceE-EEEEEEEECCc
Confidence 34789999999999999999999753322110 0112222 22222233567
Q ss_pred EEEEEeCCCCCCch------hh----hhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH-hcCC---CeE
Q 012085 345 HVVVLDSPGHKDFV------PN----MISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGV---DQL 408 (471)
Q Consensus 345 ~l~LIDTPG~e~f~------~~----~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~v---p~I 408 (471)
.+.||||||..+.. .. ....+. .+|++|||+....... .......++.+. .+|. .++
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~-------D~eD~~aLr~Iq~lFG~~Iwk~t 239 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR-------DSNDLPLLRTITDVLGPSIWFNA 239 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc-------cHHHHHHHHHHHHHhCHHhHcCE
Confidence 89999999965421 11 122333 4899999987653211 011122233222 2222 368
Q ss_pred EEEEeCCCCCC
Q 012085 409 IVAVNKMDAVQ 419 (471)
Q Consensus 409 IVVvNKiDl~~ 419 (471)
|||+|..|...
T Consensus 240 IVVFThgD~lp 250 (763)
T TIGR00993 240 IVTLTHAASAP 250 (763)
T ss_pred EEEEeCCccCC
Confidence 99999999985
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.69 E-value=3.1e-08 Score=99.63 Aligned_cols=141 Identities=20% Similarity=0.172 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCe
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~ 344 (471)
-..|+|||.+|+||||||++|++.......+. -.|.+....... ..+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drL-------------------------------FATLDpT~h~a~Lpsg~ 226 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-------------------------------FATLDPTLHSAHLPSGN 226 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchh-------------------------------heeccchhhhccCCCCc
Confidence 35699999999999999999994222111110 111111111111 2456
Q ss_pred EEEEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC------eEEE
Q 012085 345 HVVVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD------QLIV 410 (471)
Q Consensus 345 ~l~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp------~IIV 410 (471)
.+.+.||-|+..- ...++..+..+|.+|.|+|.+++. ...|....+..++..++| .||=
T Consensus 227 ~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~-------ae~q~e~Vl~vL~~igv~~~pkl~~mie 299 (410)
T KOG0410|consen 227 FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPN-------AEEQRETVLHVLNQIGVPSEPKLQNMIE 299 (410)
T ss_pred EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCcc-------HHHHHHHHHHHHHhcCCCcHHHHhHHHh
Confidence 7899999995442 223345566799999999999984 456777778888888886 3677
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
|=||+|......+. - + ...+++||++|+|+.+..
T Consensus 300 VdnkiD~e~~~~e~--------------E----~-n~~v~isaltgdgl~el~ 333 (410)
T KOG0410|consen 300 VDNKIDYEEDEVEE--------------E----K-NLDVGISALTGDGLEELL 333 (410)
T ss_pred hccccccccccCcc--------------c----c-CCccccccccCccHHHHH
Confidence 78999976421110 0 1 124899999999998753
No 328
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.59 E-value=4.5e-08 Score=98.04 Aligned_cols=79 Identities=22% Similarity=0.160 Sum_probs=51.6
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC------
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK------ 342 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~------ 342 (471)
|+|||.||+|||||+|+|++....+... ++.|++.....+...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~-------------------------------pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY-------------------------------PFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc-------------------------------cccchhceeeeEEeccchhhh
Confidence 5899999999999999999654322111 222221111111111
Q ss_pred -----------CeEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCC
Q 012085 343 -----------NYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 343 -----------~~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas 378 (471)
...+.|+|+||... +...++..++.+|++|+|||+.
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 13589999999432 4446677789999999999974
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.50 E-value=1.5e-06 Score=89.15 Aligned_cols=145 Identities=21% Similarity=0.313 Sum_probs=89.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccc-cccceEEEEEEEEecCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVAYFDSK 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e-~~~GiTi~~~~~~~~~~ 342 (471)
.-.++|.++|..|.|||||+|.|++... .... ..+..... ..+++.+......+..+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~ 78 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDET---------------------EIDDIRAEGTSPTLEIKITKAELEED 78 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCCC---------------------CccCcccccCCcceEEEeeeeeeecC
Confidence 4468899999999999999999996511 1100 00111111 23444444444444444
Q ss_pred C--eEEEEEeCCCCCCchhh--------------hhhcc--------------ccCCEEEEEEeCCCCccccccchhhhH
Q 012085 343 N--YHVVVLDSPGHKDFVPN--------------MISGA--------------TQSDAAILVIDASVGSFEVGMNTAKGL 392 (471)
Q Consensus 343 ~--~~l~LIDTPG~e~f~~~--------------~~~~l--------------~~aD~vIlVVDas~g~~e~~~~~l~~~ 392 (471)
+ ..+++|||||.-++... ...++ ...|+|||.+-.+.. .+...
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-------~l~~~ 151 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-------GLKPL 151 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-------CCCHH
Confidence 3 57899999995442211 11111 128999999987643 14455
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 393 TREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 393 ~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
..+.+.-+... + .+|-|+-|.|.. ..+.+...++.+++.+...++
T Consensus 152 DIe~Mk~ls~~-v-NlIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 196 (373)
T COG5019 152 DIEAMKRLSKR-V-NLIPVIAKADTL--TDDELAEFKERIREDLEQYNI 196 (373)
T ss_pred HHHHHHHHhcc-c-CeeeeeeccccC--CHHHHHHHHHHHHHHHHHhCC
Confidence 55544433322 2 488899999998 567778888888888877654
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.45 E-value=1.6e-06 Score=84.37 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=82.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccc-eEEEEEEEEecC--
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG-ITMTVAVAYFDS-- 341 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~G-iTi~~~~~~~~~-- 341 (471)
-.++|.|||.+|.|||||+|.|......-.. ......++.+. +.+......++-
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s-----------------------~~~~~~~p~pkT~eik~~thvieE~g 101 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSS-----------------------SSDNSAEPIPKTTEIKSITHVIEEKG 101 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhcc-----------------------CCCcccCcccceEEEEeeeeeeeecc
Confidence 3578999999999999999999832111000 00111111111 111111112222
Q ss_pred CCeEEEEEeCCCCCCch--------------hhhhhcc--------------ccCCEEEEEEeCCCCccccccchhhhHH
Q 012085 342 KNYHVVVLDSPGHKDFV--------------PNMISGA--------------TQSDAAILVIDASVGSFEVGMNTAKGLT 393 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~--------------~~~~~~l--------------~~aD~vIlVVDas~g~~e~~~~~l~~~~ 393 (471)
-..++++|||||+-++. .++..++ ...++|+|.+-++... +...+
T Consensus 102 VklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-------LrplD 174 (336)
T KOG1547|consen 102 VKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-------LRPLD 174 (336)
T ss_pred eEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-------cCccc
Confidence 24578999999943311 1112222 1278999999887542 55666
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 394 ~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
.+.+..+.+. -.+|-|+-|.|.+ ..+...+.++++++-+...++
T Consensus 175 ieflkrLt~v--vNvvPVIakaDtl--TleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 175 IEFLKRLTEV--VNVVPVIAKADTL--TLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHHhhh--heeeeeEeecccc--cHHHHHHHHHHHHHHHHhcCc
Confidence 6666554432 2478899999987 444455677777777776665
No 331
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.42 E-value=4.2e-07 Score=82.93 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+++|.+|+|||||+|+|++...... ...+|.|.......+ ...
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~---~~~ 148 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKV------------------------------APIPGETKVWQYITL---MKR 148 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceee------------------------------CCCCCeeEeEEEEEc---CCC
Confidence 46799999999999999999996433222 223566665544333 235
Q ss_pred EEEEeCCCC
Q 012085 346 VVVLDSPGH 354 (471)
Q Consensus 346 l~LIDTPG~ 354 (471)
+.|+||||.
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 899999993
No 332
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=2.8e-06 Score=87.57 Aligned_cols=144 Identities=19% Similarity=0.293 Sum_probs=84.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC--
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-- 342 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-- 342 (471)
-.+++.++|..|.|||||||.|++.... .... ...........+.+......++-+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~-~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLS-GNRE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhcc-CCcc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 3588999999999999999999954110 0000 011111111233333333333333
Q ss_pred CeEEEEEeCCCCCCchh--------------hhhh-----------ccc--cCCEEEEEEeCCCCccccccchhhhHHHH
Q 012085 343 NYHVVVLDSPGHKDFVP--------------NMIS-----------GAT--QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~--------------~~~~-----------~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (471)
...++++||||.-++.. .... .+. ..|+|||.|..+.. .+.....+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-------gL~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-------GLKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-------CCcHhhHH
Confidence 35688999999443111 1111 122 48999999987643 13444444
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
.+.-+.. .+ ++|-|+-|.|.. ..+.+..++..+...+...++
T Consensus 151 ~Mk~l~~-~v-NiIPVI~KaD~l--T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 151 FMKKLSK-KV-NLIPVIAKADTL--TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHhc-cc-cccceeeccccC--CHHHHHHHHHHHHHHHHHcCc
Confidence 4433322 23 388899999998 456677778888888777654
No 333
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=3.5e-06 Score=86.33 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCCCCchhh----hhh---c-----cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEE
Q 012085 342 KNYHVVVLDSPGHKDFVPN----MIS---G-----ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~----~~~---~-----l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~II 409 (471)
.++.++||||||....... +.. . -..++..+||+|++.+ +....+...+....++ --
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g---------~~~~~~a~~f~~~~~~--~g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG---------QNALSQAKAFHEAVGL--TG 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---------hHHHHHHHHHHhhCCC--CE
Confidence 5678999999995432221 111 1 1247789999999966 1122222233333333 36
Q ss_pred EEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 410 VVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
+|+||+|.... .-.+...+ ... ++||..++ +|++++++
T Consensus 264 iIlTKlD~t~~----~G~~l~~~----~~~-----~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAK----GGVVFAIA----DEL-----GIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCC----ccHHHHHH----HHH-----CCCEEEEe--CCCChhhC
Confidence 88999996532 11122222 222 24777777 88887553
No 334
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.33 E-value=7.1e-07 Score=83.49 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=42.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+|+|++..... ....+|+|.......+. .
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~------------------------------~~~~pg~T~~~~~~~~~---~ 162 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACN------------------------------VGATPGVTKSMQEVHLD---K 162 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccce------------------------------ecCCCCeEcceEEEEeC---C
Confidence 35789999999999999999999643221 22347777766655443 3
Q ss_pred EEEEEeCCCC
Q 012085 345 HVVVLDSPGH 354 (471)
Q Consensus 345 ~l~LIDTPG~ 354 (471)
.+.|+||||.
T Consensus 163 ~~~l~DtPGi 172 (172)
T cd04178 163 KVKLLDSPGI 172 (172)
T ss_pred CEEEEECcCC
Confidence 6899999993
No 335
>PRK14974 cell division protein FtsY; Provisional
Probab=98.33 E-value=2.1e-06 Score=88.47 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=53.8
Q ss_pred CCeEEEEEeCCCCCCchhhhhhc------cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.+..++||||||........... ...+|.++||+|+..+ +........+....++. -+++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~--giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID--GVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC--EEEEeee
Confidence 34679999999965432222222 2348899999999865 11112222222334544 6789999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|....-.. +...+.. . +.||.+++ +|+++.+.
T Consensus 290 D~~~~~G~----~ls~~~~----~-----~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADAKGGA----ALSIAYV----I-----GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCCCccH----HHHHHHH----H-----CcCEEEEe--CCCChhhc
Confidence 98642111 1222221 1 24677777 79998653
No 336
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.30 E-value=9.4e-06 Score=82.00 Aligned_cols=51 Identities=33% Similarity=0.505 Sum_probs=41.7
Q ss_pred CCCeEEEEEeCCCCC-------CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 404 GVDQLIVAVNKMDAV-------QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 404 ~vp~IIVVvNKiDl~-------~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
|+| |+||++|+|.+ ++..+.|+.|...|++++-.+|. ..|.+|++..-||+
T Consensus 222 Gi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyTSvKE~KNid 279 (473)
T KOG3905|consen 222 GIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYTSVKETKNID 279 (473)
T ss_pred CCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEeecccccchH
Confidence 344 89999999984 24467899999999999988774 56999999988875
No 337
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.27 E-value=3.4e-06 Score=80.58 Aligned_cols=130 Identities=25% Similarity=0.350 Sum_probs=70.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccc----cchhhhHHHhhcCCCccchhccccccccccccceEEEEEE------
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQK----QMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------ 336 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~----~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~------ 336 (471)
..|++||++|+||||.+-+|..+......+ ....++.++..+-+ ..-...++.+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~------------~~a~~l~vp~~~~~~~~~~~ 69 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLK------------TYAEILGVPFYVARTESDPA 69 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHH------------HHHHHHTEEEEESSTTSCHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHH------------HHHHHhccccchhhcchhhH
Confidence 459999999999999999998665433111 11111111111110 00011222211000
Q ss_pred -------EEecCCCeEEEEEeCCCCCCchhhhhhc------cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc
Q 012085 337 -------AYFDSKNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF 403 (471)
Q Consensus 337 -------~~~~~~~~~l~LIDTPG~e~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~ 403 (471)
..+...+..++||||||........... ....+-++||++++.+ .........+....
T Consensus 70 ~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~---------~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG---------QEDLEQALAFYEAF 140 (196)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG---------GHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC---------hHHHHHHHHHhhcc
Confidence 0011245789999999965543332222 1247889999999965 23334555555666
Q ss_pred CCCeEEEEEeCCCCCC
Q 012085 404 GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 404 ~vp~IIVVvNKiDl~~ 419 (471)
++.. ++++|+|...
T Consensus 141 ~~~~--lIlTKlDet~ 154 (196)
T PF00448_consen 141 GIDG--LILTKLDETA 154 (196)
T ss_dssp STCE--EEEESTTSSS
T ss_pred cCce--EEEEeecCCC
Confidence 6663 5599999874
No 338
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.26 E-value=3.4e-06 Score=82.56 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.-+|+++|.|.+|||||+..|+........ + .-.|.+.....+.+.+..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~-----------------y--------------eFTTLtcIpGvi~y~ga~ 110 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAAS-----------------Y--------------EFTTLTCIPGVIHYNGAN 110 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhc-----------------e--------------eeeEEEeecceEEecCce
Confidence 357999999999999999999842111111 0 112223333346678889
Q ss_pred EEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCC
Q 012085 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 346 l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (471)
++++|.||... -..+.+...+-||.+++|+|++..
T Consensus 111 IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 111 IQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred EEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 99999999433 245566777889999999999976
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=6e-06 Score=84.57 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=85.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcC-CCccchhccccccccccccceEEEEEEE-Ee----
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQG-KGSFAYAWALDESAEERERGITMTVAVA-YF---- 339 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~-~~s~~~~~~~d~~~~e~~~GiTi~~~~~-~~---- 339 (471)
.+=|.++|.-..||||||+.|+...-. +..+.. -.+-.|...|....+...+|.+.-+... .|
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp-----------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP-----------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC-----------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence 344999999999999999999954211 111111 1233455566666666666665532210 01
Q ss_pred -------------cCCC---eEEEEEeCCCCCC-----------chhhhhhccccCCEEEEEEeCCCCccccccchhhhH
Q 012085 340 -------------DSKN---YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGL 392 (471)
Q Consensus 340 -------------~~~~---~~l~LIDTPG~e~-----------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~ 392 (471)
..++ ..++||||||.-. |.....=.+..+|.+||++|+..-. +...
T Consensus 127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD-------IsdE 199 (532)
T KOG1954|consen 127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD-------ISDE 199 (532)
T ss_pred hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc-------ccHH
Confidence 0011 3689999999433 2222333456799999999998541 3456
Q ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 393 TREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 393 ~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
..+.+..++...-+ +-||+||.|.+.
T Consensus 200 f~~vi~aLkG~Edk-iRVVLNKADqVd 225 (532)
T KOG1954|consen 200 FKRVIDALKGHEDK-IRVVLNKADQVD 225 (532)
T ss_pred HHHHHHHhhCCcce-eEEEeccccccC
Confidence 67777777776666 889999999984
No 340
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.21 E-value=1e-05 Score=81.12 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=54.4
Q ss_pred CCeEEEEEeCCCCCCchhhhhh-------cc-----ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEE
Q 012085 342 KNYHVVVLDSPGHKDFVPNMIS-------GA-----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI 409 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~-------~l-----~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~II 409 (471)
.++.++||||||.......... .. ..+|.++||+|++.+ .....+...+.+..++ .-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~--~g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGL--TG 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCC--CE
Confidence 5678999999996543322221 11 238999999999855 1222333333334443 46
Q ss_pred EEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 410 VVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
+|+||+|....-.. +..... ..+ +|+..++ +|+++.+.
T Consensus 222 ~IlTKlDe~~~~G~----~l~~~~----~~~-----~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTAKGGI----ILSIAY----ELK-----LPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCCCccH----HHHHHH----HHC-----cCEEEEe--CCCChHhC
Confidence 78999998643211 122222 222 4667766 88887543
No 341
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.21 E-value=5.1e-06 Score=81.97 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHH
Q 012085 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT 434 (471)
Q Consensus 355 e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~ 434 (471)
+++......+++.+|.+|+|+|+..+.+ + +....+ ++..+...++| +|||+||+||.... ... .+.+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~--s---~~~l~r-~l~~~~~~~i~-~vIV~NK~DL~~~~--~~~--~~~~-~ 91 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPEL--S---LNQLDR-FLVVAEAQNIE-PIIVLNKIDLLDDE--DME--KEQL-D 91 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCC--C---HHHHHH-HHHHHHHCCCC-EEEEEECcccCCCH--HHH--HHHH-H
Confidence 4555555567889999999999996621 1 223333 34455556776 89999999997421 111 1222 2
Q ss_pred HHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 435 FLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 435 ~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+...+ .+++++||++|+||.+++..
T Consensus 92 ~~~~~g-----~~v~~~SAktg~gi~eLf~~ 117 (245)
T TIGR00157 92 IYRNIG-----YQVLMTSSKNQDGLKELIEA 117 (245)
T ss_pred HHHHCC-----CeEEEEecCCchhHHHHHhh
Confidence 233333 47899999999999988753
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.16 E-value=6.5e-06 Score=73.86 Aligned_cols=80 Identities=15% Similarity=0.239 Sum_probs=53.0
Q ss_pred hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHH
Q 012085 359 PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFL 436 (471)
Q Consensus 359 ~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l 436 (471)
......+..+|++|+|+|+..+.. ....++.+++... +.| +|+|+||+|+.. .+... .+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~--------~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~--~~~~~----~~~~~~ 67 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL--------FRPPDLERYVKEVDPRKK-NILLLNKADLLT--EEQRK----AWAEYF 67 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc--------cCCHHHHHHHHhccCCCc-EEEEEechhcCC--HHHHH----HHHHHH
Confidence 345677889999999999987732 2233445555544 555 999999999963 22222 233334
Q ss_pred HhcCCCCCCccEEEEecccCCC
Q 012085 437 RSCGFKDASLTWIPLSALENQN 458 (471)
Q Consensus 437 ~~~g~~~~~i~IIpvSAktG~g 458 (471)
+..+ ..++++||++|.+
T Consensus 68 ~~~~-----~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEG-----IVVVFFSALKENA 84 (141)
T ss_pred HhcC-----CeEEEEEecCCCc
Confidence 3333 3679999999876
No 343
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.16 E-value=4.7e-06 Score=75.68 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=52.7
Q ss_pred hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhc
Q 012085 360 NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439 (471)
Q Consensus 360 ~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~ 439 (471)
.....++.+|++|+|+|+..+.. ....++..++...+.| +|+|+||+|+.. ...... +..+....
T Consensus 5 ~~~~i~~~aD~vl~V~D~~~~~~--------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~--~~~~~~----~~~~~~~~ 69 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPEL--------TRSRKLERYVLELGKK-LLIVLNKADLVP--KEVLEK----WKSIKESE 69 (156)
T ss_pred HHHHHHhhCCEEEEEeeCCCCcc--------cCCHHHHHHHHhCCCc-EEEEEEhHHhCC--HHHHHH----HHHHHHhC
Confidence 33445566999999999986522 1223344445555666 999999999963 222111 11222222
Q ss_pred CCCCCCccEEEEecccCCCccccC
Q 012085 440 GFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 440 g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+++++||++|.|+.++.
T Consensus 70 -----~~~~~~iSa~~~~gi~~L~ 88 (156)
T cd01859 70 -----GIPVVYVSAKERLGTKILR 88 (156)
T ss_pred -----CCcEEEEEccccccHHHHH
Confidence 2468999999999998754
No 344
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.16 E-value=2.8e-05 Score=75.64 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=53.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+...|+|+|.+++|||||+|.|++...... +. ......+.|+.+....... ..+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~----------------------~~--~~~~~~T~gi~~~~~~~~~-~~~~ 60 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD----------------------VM--DTSQQTTKGIWMWSVPFKL-GKEH 60 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE----------------------ec--CCCCCCccceEEEeccccC-CCcc
Confidence 445699999999999999999996420000 00 0011222343332211111 2457
Q ss_pred EEEEEeCCCCCCc------hhhhhhcccc--CCEEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDF------VPNMISGATQ--SDAAILVIDASV 379 (471)
Q Consensus 345 ~l~LIDTPG~e~f------~~~~~~~l~~--aD~vIlVVDas~ 379 (471)
.++|+||||.... ....+..+.. ++++||.++...
T Consensus 61 ~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 61 AVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred eEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 8999999995432 2223344444 899999888874
No 345
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.14 E-value=3e-06 Score=79.63 Aligned_cols=63 Identities=24% Similarity=0.222 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+|+|+|.+|+|||||+|+|++........ .........+|.|.......+.. .+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~----------------------~~~~~~~~~~gtT~~~~~~~~~~---~~ 182 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL----------------------KDLLTTSPIPGTTLDLIKIPLGN---GK 182 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc----------------------ccccccCCCCCeeeeeEEEecCC---CC
Confidence 469999999999999999999643211100 00112334467777766655532 58
Q ss_pred EEEeCCCC
Q 012085 347 VVLDSPGH 354 (471)
Q Consensus 347 ~LIDTPG~ 354 (471)
.||||||.
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999994
No 346
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.13 E-value=3.3e-06 Score=75.78 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
+++++|.+|+|||||+|+|++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999953
No 347
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=3.3e-06 Score=86.63 Aligned_cols=56 Identities=30% Similarity=0.410 Sum_probs=43.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+++|+|.||||||||||+|++..... ....+|+|.......++.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~------------------------------~s~~PG~Tk~~q~i~~~~--- 177 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAK------------------------------TSNRPGTTKGIQWIKLDD--- 177 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhccccee------------------------------eCCCCceecceEEEEcCC---
Confidence 34679999999999999999999754422 233478888877776654
Q ss_pred EEEEEeCCC
Q 012085 345 HVVVLDSPG 353 (471)
Q Consensus 345 ~l~LIDTPG 353 (471)
.+.|+||||
T Consensus 178 ~i~LlDtPG 186 (322)
T COG1161 178 GIYLLDTPG 186 (322)
T ss_pred CeEEecCCC
Confidence 499999999
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.11 E-value=6.2e-06 Score=75.23 Aligned_cols=82 Identities=17% Similarity=0.002 Sum_probs=51.1
Q ss_pred hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhc
Q 012085 362 ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439 (471)
Q Consensus 362 ~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~ 439 (471)
...+..+|++|+|+|+..+.. .....+...+... +.| +|+|+||+|+.. .+.+..+...+.+ .+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~--------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~--~~~~~~~~~~~~~---~~ 68 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMG--------TRCKHVEEYLKKEKPHKH-LIFVLNKCDLVP--TWVTARWVKILSK---EY 68 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcc--------ccCHHHHHHHHhccCCCC-EEEEEEchhcCC--HHHHHHHHHHHhc---CC
Confidence 456788999999999987621 2233444444432 355 899999999973 2222222222221 11
Q ss_pred CCCCCCccEEEEecccCCCcccc
Q 012085 440 GFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 440 g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
...++++||+++.|+.+.
T Consensus 69 -----~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 69 -----PTIAFHASINNPFGKGSL 86 (157)
T ss_pred -----cEEEEEeeccccccHHHH
Confidence 123689999999998764
No 349
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.10 E-value=4.1e-06 Score=76.31 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=39.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
...+|+|+|.+|+|||||+|+|++..... ....++.|.......+. .
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~---~ 145 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKLD---N 145 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEec---C
Confidence 34679999999999999999999533211 11224555554444332 4
Q ss_pred EEEEEeCCCC
Q 012085 345 HVVVLDSPGH 354 (471)
Q Consensus 345 ~l~LIDTPG~ 354 (471)
.+.|+||||.
T Consensus 146 ~~~liDtPG~ 155 (155)
T cd01849 146 KIKLLDTPGI 155 (155)
T ss_pred CEEEEECCCC
Confidence 6999999994
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.08 E-value=1.2e-05 Score=85.30 Aligned_cols=66 Identities=27% Similarity=0.474 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCCCchhh----hhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPN----MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~----~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.++.++||||||....... +... ...++.++||+|+..+ ......+..+.+. ++.--+|+||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G----------q~a~~~a~~F~~~-~~~~g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG----------QAAEAQAKAFKDS-VDVGSVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC----------hhHHHHHHHHHhc-cCCcEEEEECc
Confidence 3678999999995443222 2222 2347889999999866 1112222333221 22247889999
Q ss_pred CCC
Q 012085 416 DAV 418 (471)
Q Consensus 416 Dl~ 418 (471)
|..
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 975
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.08 E-value=6.1e-06 Score=83.20 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=41.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+|+|++..... ....+|+|.......+. .
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~~---~ 166 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK------------------------------TGNRPGVTKAQQWIKLG---K 166 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc------------------------------cCCCCCeEEEEEEEEeC---C
Confidence 45789999999999999999999643211 12246777766544432 3
Q ss_pred EEEEEeCCCC
Q 012085 345 HVVVLDSPGH 354 (471)
Q Consensus 345 ~l~LIDTPG~ 354 (471)
.+.||||||.
T Consensus 167 ~~~l~DtPGi 176 (287)
T PRK09563 167 GLELLDTPGI 176 (287)
T ss_pred cEEEEECCCc
Confidence 6899999995
No 352
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.05 E-value=1.6e-05 Score=83.12 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcccc------ccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEE-
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRI------TQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAY- 338 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i------~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~- 338 (471)
...|++||++||||||.+-.|..+.... .--+...|+.++.++-+. | -...++.+......
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~---Y---------a~im~vp~~vv~~~~ 270 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKT---Y---------ADIMGVPLEVVYSPK 270 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHH---H---------HHHhCCceEEecCHH
Confidence 6779999999999999999998765511 111344445444444321 1 11233333222111
Q ss_pred ------ecCCCeEEEEEeCCCCCCchhhhhhc----ccc--CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC
Q 012085 339 ------FDSKNYHVVVLDSPGHKDFVPNMISG----ATQ--SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD 406 (471)
Q Consensus 339 ------~~~~~~~l~LIDTPG~e~f~~~~~~~----l~~--aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp 406 (471)
.......++||||.|...+....+.. +.. ..-+.||++++.. ....++++.....+++.
T Consensus 271 el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K---------~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 271 ELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK---------YEDLKEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc---------hHHHHHHHHHhccCCcc
Confidence 12345789999999966544433332 222 3345677888754 24567777777777776
Q ss_pred eEEEEEeCCCCCC
Q 012085 407 QLIVAVNKMDAVQ 419 (471)
Q Consensus 407 ~IIVVvNKiDl~~ 419 (471)
. ++++|+|...
T Consensus 342 ~--~I~TKlDET~ 352 (407)
T COG1419 342 G--LIFTKLDETT 352 (407)
T ss_pred e--eEEEcccccC
Confidence 4 5689999864
No 353
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=98.04 E-value=1.6e-06 Score=57.79 Aligned_cols=29 Identities=34% Similarity=0.752 Sum_probs=23.7
Q ss_pred CCceeecccccCCCCccccccccCCCCCc
Q 012085 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (471)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (471)
.|.|.|+.|||.|..+...|.|||++|.+
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C~~~rp~ 30 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVACGAPRPG 30 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT--BTTB
T ss_pred CcCccCCCCcCCchHHhhhhhCcCCCCcC
Confidence 46799999999999999999999999963
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.04 E-value=6.8e-06 Score=82.34 Aligned_cols=57 Identities=28% Similarity=0.264 Sum_probs=39.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+|+|++...... ...+|+|.......+. .
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~~---~ 163 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV------------------------------GNRPGVTKGQQWIKLS---D 163 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------CCCCCeecceEEEEeC---C
Confidence 457899999999999999999985322111 1235566655444432 3
Q ss_pred EEEEEeCCCC
Q 012085 345 HVVVLDSPGH 354 (471)
Q Consensus 345 ~l~LIDTPG~ 354 (471)
.+.||||||.
T Consensus 164 ~~~l~DtPG~ 173 (276)
T TIGR03596 164 GLELLDTPGI 173 (276)
T ss_pred CEEEEECCCc
Confidence 6899999996
No 355
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=1.2e-05 Score=84.18 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CeEEEEEeCCCCCCc----hhhhhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHKDF----VPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f----~~~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
+..++||||||.... +..+...+ ...+.++||++++.. .....+++..+...++. =++++|+|
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk---------~~d~~~i~~~F~~~~id--glI~TKLD 388 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 388 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC---------hHHHHHHHHHhcCCCCC--EEEEEccc
Confidence 468999999995432 22222222 236788999998744 12334555555555655 46789999
Q ss_pred CCC
Q 012085 417 AVQ 419 (471)
Q Consensus 417 l~~ 419 (471)
...
T Consensus 389 ET~ 391 (436)
T PRK11889 389 ETA 391 (436)
T ss_pred CCC
Confidence 864
No 356
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.03 E-value=1.1e-05 Score=75.81 Aligned_cols=94 Identities=18% Similarity=0.069 Sum_probs=55.9
Q ss_pred chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHH-H
Q 012085 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGT-F 435 (471)
Q Consensus 357 f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~-~ 435 (471)
|...+..++..+|++|+|+|+..... ....++ .....+.| +|+|+||+|+..... ....+...+.. .
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~ 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL--RLFGGNNP-VILVGNKIDLLPKDK-NLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC--------ccchhH--HHhcCCCc-EEEEEEchhcCCCCC-CHHHHHHHHHHHH
Confidence 57777888899999999999986521 111111 11223444 999999999974321 11111111101 1
Q ss_pred HHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 436 LRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 436 l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+..++. ...++++||++|.|+.+++.
T Consensus 92 ~~~~~~~--~~~i~~vSA~~~~gi~eL~~ 118 (190)
T cd01855 92 AAGLGLK--PKDVILISAKKGWGVEELIN 118 (190)
T ss_pred HhhcCCC--cccEEEEECCCCCCHHHHHH
Confidence 1222221 12579999999999988653
No 357
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.00 E-value=1e-05 Score=75.04 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+++|.+|+|||||+|+|++.... .....++.|.......+. ..
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~------------------------------~~~~~~~~T~~~~~~~~~---~~ 161 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVA------------------------------KVGNKPGVTKGIQWIKIS---PG 161 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCce------------------------------eecCCCCEEeeeEEEEec---CC
Confidence 467999999999999999999953221 112234556555554443 46
Q ss_pred EEEEeCCCC
Q 012085 346 VVVLDSPGH 354 (471)
Q Consensus 346 l~LIDTPG~ 354 (471)
+.||||||.
T Consensus 162 ~~~iDtpG~ 170 (171)
T cd01856 162 IYLLDTPGI 170 (171)
T ss_pred EEEEECCCC
Confidence 899999995
No 358
>PRK12288 GTPase RsgA; Reviewed
Probab=98.00 E-value=8.4e-06 Score=84.46 Aligned_cols=25 Identities=32% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
.++|+|.+|||||||||+|++....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 3899999999999999999975443
No 359
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.99 E-value=0.0001 Score=79.23 Aligned_cols=49 Identities=31% Similarity=0.441 Sum_probs=39.2
Q ss_pred eEEEEEeCCCCCC-------CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 407 QLIVAVNKMDAVQ-------YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 407 ~IIVVvNKiDl~~-------~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
||+||++|.|... +..+.++.|...|+.++-.+|. ..|.+|++...|+.
T Consensus 198 pi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~~n~~ 253 (472)
T PF05783_consen 198 PIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEEKNLD 253 (472)
T ss_pred ceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeeccccccHH
Confidence 4999999999752 4456788899999999877764 66889999887765
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.98 E-value=2.1e-05 Score=71.59 Aligned_cols=77 Identities=23% Similarity=0.210 Sum_probs=47.4
Q ss_pred CEEEEEEeCCCCccccccchhhhHHHHHH-HHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcc
Q 012085 369 DAAILVIDASVGSFEVGMNTAKGLTREHA-QLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (471)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l-~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~ 447 (471)
|++|+|+|+..+... ...++. ..+...++| +|+|+||+|+.. .+....+... + .... ...
T Consensus 1 Dvvl~VvD~~~p~~~--------~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~--~~~~~~~~~~---~-~~~~----~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLGT--------RSPDIERVLIKEKGKK-LILVLNKADLVP--KEVLRKWLAY---L-RHSY----PTI 61 (155)
T ss_pred CEEEEEEeccCCccc--------cCHHHHHHHHhcCCCC-EEEEEechhcCC--HHHHHHHHHH---H-HhhC----Cce
Confidence 789999999876321 112222 344455666 999999999973 2222222212 2 1111 236
Q ss_pred EEEEecccCCCccccCC
Q 012085 448 WIPLSALENQNLVTAPD 464 (471)
Q Consensus 448 IIpvSAktG~gI~e~~~ 464 (471)
++++||++|.|+.++..
T Consensus 62 ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 62 PFKISATNGQGIEKKES 78 (155)
T ss_pred EEEEeccCCcChhhHHH
Confidence 79999999999987643
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.98 E-value=3.8e-06 Score=77.78 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|+|.+|||||||||+|++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999999653
No 362
>PRK00098 GTPase RsgA; Reviewed
Probab=97.96 E-value=3.5e-05 Score=78.21 Aligned_cols=83 Identities=27% Similarity=0.334 Sum_probs=54.6
Q ss_pred cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCC
Q 012085 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (471)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (471)
+..+|.+|+|+|+..+.+ .......++..+...++| +|+|+||+|+... .+.. ..+...+...+
T Consensus 78 aaniD~vllV~d~~~p~~------~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~-~~~~----~~~~~~~~~~g---- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDF------STDLLDRFLVLAEANGIK-PIIVLNKIDLLDD-LEEA----RELLALYRAIG---- 141 (298)
T ss_pred eecCCEEEEEEECCCCCC------CHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCC-HHHH----HHHHHHHHHCC----
Confidence 577999999999976522 112334445556667777 8999999999632 1221 12223333444
Q ss_pred CccEEEEecccCCCccccCC
Q 012085 445 SLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 445 ~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++++||++|+|+.+++.
T Consensus 142 -~~v~~vSA~~g~gi~~L~~ 160 (298)
T PRK00098 142 -YDVLELSAKEGEGLDELKP 160 (298)
T ss_pred -CeEEEEeCCCCccHHHHHh
Confidence 3789999999999987654
No 363
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.95 E-value=2.4e-05 Score=76.11 Aligned_cols=65 Identities=26% Similarity=0.455 Sum_probs=50.7
Q ss_pred CeEEEEEeC-CCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 343 NYHVVVLDS-PGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDT-PG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
...++|+|| +|.+.|..-+ ...+|.+|.|+|.+.. -....+.+.++..+++++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~--------sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYK--------SLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHH--------HHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 468999999 6777666544 4559999999999954 224556777888899977899999999953
No 364
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.90 E-value=3.8e-05 Score=81.98 Aligned_cols=150 Identities=16% Similarity=0.179 Sum_probs=81.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccc-cchhhhHHHhhcCCCccchhccccc---------------------
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK-QMHKYEKEAKLQGKGSFAYAWALDE--------------------- 321 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~-~v~~~~~~a~~~~~~s~~~~~~~d~--------------------- 321 (471)
...++|+|||.-.+|||+.+..+.......... .+.+-...-.....|.+..+.+.+.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 345789999999999999999886432211100 1110000000111122222222211
Q ss_pred -cccccccceEEEEEEEEecCCC---eEEEEEeCCCCC-------------CchhhhhhccccCCEEEEEEeCCCCcccc
Q 012085 322 -SAEERERGITMTVAVAYFDSKN---YHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFEV 384 (471)
Q Consensus 322 -~~~e~~~GiTi~~~~~~~~~~~---~~l~LIDTPG~e-------------~f~~~~~~~l~~aD~vIlVVDas~g~~e~ 384 (471)
.......|.|+....+.+...+ .+++|+|.||.. ....+...++..+.++||+|--. ...+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG--SVDA 463 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG--SVDA 463 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC--Ccch
Confidence 1111245666655555554332 578999999932 24455567888899999997332 1112
Q ss_pred ccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 385 GMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 385 ~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
. +...-.+...+...|.. .|+|++|+|+.+.
T Consensus 464 E----RSnVTDLVsq~DP~GrR-TIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 E----RSIVTDLVSQMDPHGRR-TIFVLTKVDLAEK 494 (980)
T ss_pred h----hhhHHHHHHhcCCCCCe-eEEEEeecchhhh
Confidence 1 12223333444445555 8999999999864
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.3e-05 Score=83.30 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++|+|.+|||||||||+|++...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 389999999999999999996543
No 366
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.88 E-value=2.1e-05 Score=81.86 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=55.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc-ccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEE---------E
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG-RITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVA---------V 336 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~-~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~---------~ 336 (471)
++++|||.||+|||||+|+|++... .+... .| ...++..|+-.-.. .
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-----------------pf------tTi~p~~g~v~v~d~r~d~L~~~~ 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-----------------PF------TTIEPNAGVVNPSDPRLDLLAIYI 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-----------------CC------CCCCCceeEEEechhHHHHHHHHh
Confidence 6799999999999999999996543 22111 01 11111111111000 0
Q ss_pred EEecCCCeEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCC
Q 012085 337 AYFDSKNYHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 337 ~~~~~~~~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas 378 (471)
..-......+.++|.||... +...++..++.+|++++|+++.
T Consensus 60 ~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 60 KPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred CCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 00011234689999999433 6667888999999999999985
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.87 E-value=0.00035 Score=73.39 Aligned_cols=162 Identities=17% Similarity=0.242 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEE----------E
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV----------A 335 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~----------~ 335 (471)
.+=|+|||++-+||||||.||........-... +.+....+.- +.+ ..|.|+.. .
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~--~~reRa~DEL------------PQS-~aGktImTTEPKFiP~eAv 81 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDE--YERERARDEL------------PQS-GAGKTIMTTEPKFIPNEAV 81 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCH--HHHHHhhhcC------------CcC-CCCCceeccCCcccCCcce
Confidence 466999999999999999999876655433221 1122222211 100 01112110 1
Q ss_pred EEEe-cCCCeEEEEEeCCC--------CC-----C------------chhhhhhc----cccCCEEEEEEeCCCCccccc
Q 012085 336 VAYF-DSKNYHVVVLDSPG--------HK-----D------------FVPNMISG----ATQSDAAILVIDASVGSFEVG 385 (471)
Q Consensus 336 ~~~~-~~~~~~l~LIDTPG--------~e-----~------------f~~~~~~~----l~~aD~vIlVVDas~g~~e~~ 385 (471)
...+ +.-..++.|+|+-| +. + |.....-+ ++.=.-+=+||-.....++..
T Consensus 82 ~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dip 161 (492)
T PF09547_consen 82 EITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIP 161 (492)
T ss_pred EEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCC
Confidence 1112 23456889999998 11 1 11111111 111111223333333345666
Q ss_pred cchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecc
Q 012085 386 MNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (471)
Q Consensus 386 ~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk 454 (471)
.+.+.......++.|+..++| |||++|-.+=. + +.-..+.+.|... ++++++|+++.
T Consensus 162 Re~Y~eAEervI~ELk~igKP-FvillNs~~P~--s-~et~~L~~eL~ek--------Y~vpVlpvnc~ 218 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEIGKP-FVILLNSTKPY--S-EETQELAEELEEK--------YDVPVLPVNCE 218 (492)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-EEEEEeCCCCC--C-HHHHHHHHHHHHH--------hCCcEEEeehH
Confidence 777777888888999999988 99999987643 1 2222333333333 45677887764
No 368
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.87 E-value=1.9e-05 Score=78.00 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++|+|.+|||||||||+|++...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhh
Confidence 589999999999999999996543
No 369
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.87 E-value=3.6e-05 Score=70.24 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+..+.||||||.. ......+..+|.+|+|...+.. .........++... =++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~---------D~y~~~k~~~~~~~----~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG---------DDIQAIKAGIMEIA----DIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch---------hHHHHhhhhHhhhc----CEEEEeCCC
Confidence 46789999999954 3334577889999999877732 11222222333332 278899998
No 370
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.87 E-value=2.2e-05 Score=75.23 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=45.3
Q ss_pred CeEEEEEeCCCCCC------chhhhhhcccc---CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 343 NYHVVVLDSPGHKD------FVPNMISGATQ---SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 343 ~~~l~LIDTPG~e~------f~~~~~~~l~~---aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
...+.|+|+|||.+ ..+.....+.+ -=+++|++|+. +-.+...+..-..-.+..+..+.+| -|=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq---f~vD~~KfiSG~lsAlsAMi~lE~P-~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ---FLVDSTKFISGCLSALSAMISLEVP-HINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc---hhhhHHHHHHHHHHHHHHHHHhcCc-chhhhh
Confidence 34689999999655 34445555555 33678888876 2222222333333344445566788 688999
Q ss_pred CCCCCC
Q 012085 414 KMDAVQ 419 (471)
Q Consensus 414 KiDl~~ 419 (471)
||||..
T Consensus 173 KMDLlk 178 (273)
T KOG1534|consen 173 KMDLLK 178 (273)
T ss_pred HHHHhh
Confidence 999975
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.85 E-value=0.00011 Score=67.80 Aligned_cols=68 Identities=24% Similarity=0.452 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCCCchhhhhhc------cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.+..++|+||||...+....... ....+.++||+++..+ .........+.+..++ .-+|+||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---------~~~~~~~~~~~~~~~~--~~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---------QDAVNQAKAFNEALGI--TGVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---------hHHHHHHHHHHhhCCC--CEEEEECC
Confidence 35678999999975332222221 2348999999999744 1222333344444454 46778999
Q ss_pred CCCCC
Q 012085 416 DAVQY 420 (471)
Q Consensus 416 Dl~~~ 420 (471)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98743
No 372
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.84 E-value=0.00016 Score=67.03 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=55.7
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
..+.++|+|||+... ......+..+|.+|+|+..... -.......+++++..+.+ +.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~--------~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~- 158 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPS--------GLHDLERAVELVRHFGIP-VGVVINKYDLNDE- 158 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcc--------cHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc-
Confidence 567899999997532 2445667889999999998854 123445566677777777 8899999997521
Q ss_pred hhhHHHHHHHHHHHHHhcCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~ 441 (471)
....+.++++.+++
T Consensus 159 ------~~~~~~~~~~~~~~ 172 (179)
T cd03110 159 ------IAEEIEDYCEEEGI 172 (179)
T ss_pred ------hHHHHHHHHHHcCC
Confidence 12344455555553
No 373
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.84 E-value=0.00022 Score=73.28 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=54.0
Q ss_pred CeEEEEEeCCCCCCchhh--------hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 343 NYHVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~--------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
.....||.|-|...=.+. .+...-..|.+|-|||+.+... ...........++... =+||+||
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~-----~~~~~~~~~~~Qia~A----D~ivlNK 154 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLE-----GLDAIAELAEDQLAFA----DVIVLNK 154 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhh-----hHHHHHHHHHHHHHhC----cEEEEec
Confidence 367899999995442222 2223334788999999996511 0111122233333322 2788999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEec
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSA 453 (471)
+|++.. +.++.+...++++ + +.++|+.++.
T Consensus 155 ~Dlv~~--~~l~~l~~~l~~l----n---p~A~i~~~~~ 184 (323)
T COG0523 155 TDLVDA--EELEALEARLRKL----N---PRARIIETSY 184 (323)
T ss_pred ccCCCH--HHHHHHHHHHHHh----C---CCCeEEEccc
Confidence 999954 3344444444444 3 5678888777
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.84 E-value=1.7e-05 Score=73.02 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEcCCCCCchhHhHHHhhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~ 289 (471)
++|+|..|+|||||+++|+..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 789999999999999999865
No 375
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.82 E-value=2.2e-05 Score=72.79 Aligned_cols=89 Identities=17% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCC-CCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHH
Q 012085 352 PGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (471)
Q Consensus 352 PG~-e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~ 430 (471)
||| .+...+....+..+|++|+|+|+..+... ...++...+ .+.| +|+|+||+|+.. .+....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~--------~~~~i~~~~--~~k~-~ilVlNK~Dl~~--~~~~~~--- 66 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSS--------RNPLLEKIL--GNKP-RIIVLNKADLAD--PKKTKK--- 66 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCc--------CChhhHhHh--cCCC-EEEEEehhhcCC--hHHHHH---
Confidence 553 34566777888999999999999866321 112222222 2344 899999999963 222111
Q ss_pred HHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 431 ~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
..+++...+ ..++++||+++.|+.++
T Consensus 67 -~~~~~~~~~-----~~vi~iSa~~~~gi~~L 92 (171)
T cd01856 67 -WLKYFESKG-----EKVLFVNAKSGKGVKKL 92 (171)
T ss_pred -HHHHHHhcC-----CeEEEEECCCcccHHHH
Confidence 112222221 35799999999999874
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.82 E-value=3.5e-05 Score=80.22 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+|+|+|.+|||||||+|+|++...... ........+|.|.......+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~-------------------------~~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK-------------------------DVITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc-------------------------ceeeecCCCCeEeeEEEEEe---CCCC
Confidence 4799999999999999999996422110 01123345777776655444 2246
Q ss_pred EEEeCCCCCCch---hhh-------hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 347 VVLDSPGHKDFV---PNM-------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 347 ~LIDTPG~e~f~---~~~-------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.|+||||..... ... +..-......+++++..+..+..++..+. ++..... .+.+.++|-+
T Consensus 207 ~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d--------~~~~~~~-~~~~~~~~~~ 277 (360)
T TIGR03597 207 SLYDTPGIINSHQMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFD--------YLKGEKT-SFTFYVSNEL 277 (360)
T ss_pred EEEECCCCCChhHhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEE--------EecCCce-EEEEEccCCc
Confidence 899999954321 111 11123467788888888765554443321 1222222 3677777776
Q ss_pred CCC
Q 012085 417 AVQ 419 (471)
Q Consensus 417 l~~ 419 (471)
...
T Consensus 278 ~~h 280 (360)
T TIGR03597 278 NIH 280 (360)
T ss_pred eeE
Confidence 653
No 377
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.81 E-value=3.3e-05 Score=70.05 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCchhHhHHHhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg 288 (471)
..+++++|.+|+|||||+|+|++
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~ 123 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKG 123 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45789999999999999999984
No 378
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.80 E-value=2.4e-05 Score=73.21 Aligned_cols=81 Identities=17% Similarity=0.312 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCCCchhh-----hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPN-----MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~-----~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
...+.||.+.|...-... .....-..+.+|.|+|+..- .........+..++... . +||+||+|+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~------~~~~~~~~~~~~Qi~~A--D--vIvlnK~D~ 153 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNF------DELENIPELLREQIAFA--D--VIVLNKIDL 153 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTH------GGHTTHCHHHHHHHCT---S--EEEEE-GGG
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccc------cccccchhhhhhcchhc--C--EEEEecccc
Confidence 457889999995443333 12223347899999999753 10111222223333222 2 778999999
Q ss_pred CCCChh-hHHHHHHHHHHH
Q 012085 418 VQYSKD-RFDSIKVQLGTF 435 (471)
Q Consensus 418 ~~~~~e-~~eei~~~L~~~ 435 (471)
+. .+ .++.+.+.++++
T Consensus 154 ~~--~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 154 VS--DEQKIERVREMIREL 170 (178)
T ss_dssp HH--HH--HHHHHHHHHHH
T ss_pred CC--hhhHHHHHHHHHHHH
Confidence 84 33 335555555555
No 379
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=4.3e-05 Score=79.80 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|+.|+||||++..|....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999998643
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.79 E-value=4.5e-05 Score=79.46 Aligned_cols=98 Identities=20% Similarity=0.219 Sum_probs=64.4
Q ss_pred CCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHH
Q 012085 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (471)
Q Consensus 354 ~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~ 433 (471)
.++|..........++++|+|+|+.+.. .....++.+.+. +. ++++|+||+|+.... ...+.+.+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~~--~~-piilV~NK~DLl~k~-~~~~~~~~~l~ 117 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFVG--GN-PVLLVGNKIDLLPKS-VNLSKIKEWMK 117 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHhC--CC-CEEEEEEchhhCCCC-CCHHHHHHHHH
Confidence 4467776666778899999999987541 122233333321 33 499999999997432 22344555565
Q ss_pred HHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 434 TFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 434 ~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.++..++.. ..++++||++|.|+.+++..
T Consensus 118 ~~~k~~g~~~--~~i~~vSAk~g~gv~eL~~~ 147 (360)
T TIGR03597 118 KRAKELGLKP--VDIILVSAKKGNGIDELLDK 147 (360)
T ss_pred HHHHHcCCCc--CcEEEecCCCCCCHHHHHHH
Confidence 6666666532 25799999999999987643
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.79 E-value=7.6e-05 Score=77.55 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=54.5
Q ss_pred hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 012085 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (471)
Q Consensus 363 ~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~ 442 (471)
..+..+|.+|+|+|+..+.. . . .....++..+...++| +|||+||+||+. .+..+.+ ...+..+++
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~----~-~-~~LdR~L~~a~~~~ip-~ILVlNK~DLv~--~~~~~~~----~~~~~~~g~- 150 (352)
T PRK12289 85 PPVANADQILLVFALAEPPL----D-P-WQLSRFLVKAESTGLE-IVLCLNKADLVS--PTEQQQW----QDRLQQWGY- 150 (352)
T ss_pred hhhhcCCEEEEEEECCCCCC----C-H-HHHHHHHHHHHHCCCC-EEEEEEchhcCC--hHHHHHH----HHHHHhcCC-
Confidence 34778999999999986521 1 1 1223334444556777 899999999973 2222222 233334454
Q ss_pred CCCccEEEEecccCCCccccCC
Q 012085 443 DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 443 ~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.++++||++|.|+.+++.
T Consensus 151 ----~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 151 ----QPLFISVETGIGLEALLE 168 (352)
T ss_pred ----eEEEEEcCCCCCHHHHhh
Confidence 579999999999987654
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.0001 Score=76.99 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.-.|+|+|++|+||||++.+|.+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998653
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=7.6e-05 Score=78.91 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCeEEEEEeCCCCCCch----hhhhhccc-----cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 342 KNYHVVVLDSPGHKDFV----PNMISGAT-----QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~----~~~~~~l~-----~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
.+..++||||||..... ..+...+. ...-.+||+|++.+ .....+.+......++. =+|+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~---------~~~~~~~~~~f~~~~~~--glIl 366 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS---------YHHTLTVLKAYESLNYR--RILL 366 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC---------HHHHHHHHHHhcCCCCC--EEEE
Confidence 46689999999964321 12222221 24468899999966 23445555555666665 4678
Q ss_pred eCCCCCC
Q 012085 413 NKMDAVQ 419 (471)
Q Consensus 413 NKiDl~~ 419 (471)
+|+|...
T Consensus 367 TKLDEt~ 373 (432)
T PRK12724 367 TKLDEAD 373 (432)
T ss_pred EcccCCC
Confidence 9999863
No 384
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.76 E-value=2.9e-05 Score=79.00 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=56.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec---C
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD---S 341 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~---~ 341 (471)
..++|+|||.||+|||||+|+|+....... +|.|++.-.....-..+...++.-...+. .
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~-----------------NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~ 81 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAA-----------------NFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSK 81 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCcc-----------------CCCcceeccccceeecCchHHHHHHHhcCCcce
Confidence 457899999999999999999984332221 22222111110000000000000000000 0
Q ss_pred CCeEEEEEeCCCCC-------CchhhhhhccccCCEEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 342 ~~~~l~LIDTPG~e-------~f~~~~~~~l~~aD~vIlVVDas 378 (471)
-...++++|++|.. -+...+++.++.+|+++.|+++.
T Consensus 82 vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 82 VPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred eeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEec
Confidence 12468999999943 37788899999999999999986
No 385
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.74 E-value=0.00017 Score=77.02 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.+..|+++|.+|+||||++..|....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46679999999999999999997543
No 386
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.74 E-value=0.00012 Score=75.62 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=79.8
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc------C
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~ 404 (471)
|..+....|...+..+.++|.+||..-+..|...+..++++|||++.+.----..-+.......+-+.+.... .
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 3445556677788999999999999999999999999999999999874310000011122333333333321 1
Q ss_pred CCeEEEEEeCCCCCC--------------CC-hhhHHHHHHHHHHHHHhcCCCC-CCccEEEEecccCCCccccCC
Q 012085 405 VDQLIVAVNKMDAVQ--------------YS-KDRFDSIKVQLGTFLRSCGFKD-ASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 405 vp~IIVVvNKiDl~~--------------~~-~e~~eei~~~L~~~l~~~g~~~-~~i~IIpvSAktG~gI~e~~~ 464 (471)
.-+||+++||+|+-. +. ...+++...-++..+..+.... ..+-...+.|.+-++|...|.
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~ 337 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFD 337 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHH
Confidence 125999999999842 11 1223344444444444433322 334445567777777665543
No 387
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.73 E-value=3.9e-05 Score=77.44 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..+++|.+|||||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 5899999999999999999964
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=97.71 E-value=4.4e-05 Score=79.66 Aligned_cols=60 Identities=27% Similarity=0.327 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+++|||.+|||||||||+|++..... .........+|+|.......+.. ..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~-------------------------~~~~~~s~~pGTT~~~~~~~l~~---~~ 212 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGE-------------------------KDVITTSRFPGTTLDKIEIPLDD---GS 212 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCc-------------------------cceEEecCCCCccceeEEEEcCC---Cc
Confidence 469999999999999999999532100 01122345678888766655532 25
Q ss_pred EEEeCCCC
Q 012085 347 VVLDSPGH 354 (471)
Q Consensus 347 ~LIDTPG~ 354 (471)
.|+||||.
T Consensus 213 ~l~DTPGi 220 (365)
T PRK13796 213 FLYDTPGI 220 (365)
T ss_pred EEEECCCc
Confidence 89999995
No 389
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.68 E-value=5.3e-05 Score=75.96 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCCC-CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHH
Q 012085 352 PGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKV 430 (471)
Q Consensus 352 PG~e-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~ 430 (471)
|||- ....++...+..+|++|+|+|+..+... ...++.+++. +.| +|+|+||+|+.. ......+.+
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~--------~~~~i~~~l~--~kp-~IiVlNK~DL~~--~~~~~~~~~ 71 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSS--------RNPMIDEIRG--NKP-RLIVLNKADLAD--PAVTKQWLK 71 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCC--------CChhHHHHHC--CCC-EEEEEEccccCC--HHHHHHHHH
Confidence 6643 3455667788889999999999866321 1122233332 344 999999999963 222222222
Q ss_pred HHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 431 QLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 431 ~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.++..+ ..++++||+++.|+.++
T Consensus 72 ----~~~~~~-----~~vi~iSa~~~~gi~~L 94 (276)
T TIGR03596 72 ----YFEEKG-----IKALAINAKKGKGVKKI 94 (276)
T ss_pred ----HHHHcC-----CeEEEEECCCcccHHHH
Confidence 222222 36799999999998764
No 390
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=97.68 E-value=1.5e-05 Score=51.19 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.5
Q ss_pred CceeecccccCCCCccccccccCCC
Q 012085 49 RVWSCAICTYDNEEGMSVCDICGVL 73 (471)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~ 73 (471)
|.|.|+.|+|.|......|++|+++
T Consensus 1 g~W~C~~C~~~N~~~~~~C~~C~~p 25 (26)
T smart00547 1 GDWECPACTFLNFASRSKCFACGAP 25 (26)
T ss_pred CcccCCCCCCcChhhhccccccCCc
Confidence 4699999999999999999999985
No 391
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00013 Score=77.42 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=41.9
Q ss_pred CCCeEEEEEeCCCCCCchhhh---hhcc---ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNM---ISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~---~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
..+..++||||+|........ +..+ ....-.+||++++.. .....+.+......++. =++++|
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~--~~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIH--GCIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCC--EEEEEe
Confidence 356789999999955432221 1222 235568899999954 23334455555555555 467899
Q ss_pred CCCCC
Q 012085 415 MDAVQ 419 (471)
Q Consensus 415 iDl~~ 419 (471)
+|...
T Consensus 336 lDEt~ 340 (420)
T PRK14721 336 VDEAA 340 (420)
T ss_pred eeCCC
Confidence 99864
No 392
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00018 Score=72.09 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=41.4
Q ss_pred CeEEEEEeCCCCCCc----hhhhhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHKDF----VPNMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f----~~~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
+..++||||||.... ...+...+ ...+-++||++++.. .....+++......++. =++++|.|
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~---------~~d~~~~~~~f~~~~~~--~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK---------SKDMIEIITNFKDIHID--GIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC---------HHHHHHHHHHhCCCCCC--EEEEEeec
Confidence 568999999995532 22222222 246778999999844 12334444444455555 46789999
Q ss_pred CCC
Q 012085 417 AVQ 419 (471)
Q Consensus 417 l~~ 419 (471)
...
T Consensus 223 et~ 225 (270)
T PRK06731 223 ETA 225 (270)
T ss_pred CCC
Confidence 864
No 393
>PRK10867 signal recognition particle protein; Provisional
Probab=97.61 E-value=0.00035 Score=74.46 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+..|+++|.+|+||||++..|...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999999988888654
No 394
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.61 E-value=9.4e-05 Score=63.27 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhHhHHHh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLL 287 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLl 287 (471)
++|+++|..|+|||+|+.++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~ 21 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFV 21 (124)
T ss_pred CEEEEECCCChhHHHHHHHHh
Confidence 379999999999999999996
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00034 Score=75.88 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
...|+|+|..|+||||++..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 396
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.57 E-value=0.00022 Score=75.92 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCCCch----hhhhhccc---cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 342 KNYHVVVLDSPGHKDFV----PNMISGAT---QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~----~~~~~~l~---~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
.+..++||||||..... ..+...+. ...-+++|++++.+ .....+.+..+...++. =+++||
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~---------~~~l~~~~~~f~~~~~~--~vI~TK 366 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK---------YEDLKDIYKHFSRLPLD--GLIFTK 366 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC---------HHHHHHHHHHhCCCCCC--EEEEec
Confidence 35789999999964432 12222222 34567888999854 12334444445444443 477999
Q ss_pred CCCCC
Q 012085 415 MDAVQ 419 (471)
Q Consensus 415 iDl~~ 419 (471)
+|...
T Consensus 367 lDet~ 371 (424)
T PRK05703 367 LDETS 371 (424)
T ss_pred ccccc
Confidence 99853
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.57 E-value=0.00011 Score=74.08 Aligned_cols=24 Identities=42% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++++|.+|+|||||||+|++..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 469999999999999999999754
No 398
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.52 E-value=0.0003 Score=72.07 Aligned_cols=131 Identities=16% Similarity=0.147 Sum_probs=79.3
Q ss_pred EEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCc---ccc-ccchhhhHHHHHHHHHHh---cC
Q 012085 332 MTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEV-GMNTAKGLTREHAQLIRS---FG 404 (471)
Q Consensus 332 i~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~---~e~-~~~~l~~~~~e~l~ll~~---~~ 404 (471)
..+....+...+..+.+||++|+...+..|..++..++++|||+|.+..- .+. ....+......+-.++.. .+
T Consensus 149 ~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~ 228 (317)
T cd00066 149 TGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFAN 228 (317)
T ss_pred CCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccC
Confidence 34444556667889999999999999999999999999999999998520 000 011222222222233332 23
Q ss_pred CCeEEEEEeCCCCCC--------------CC--hhhHHHHHHHHHHHHHhcCC-CCCCccEEEEecccCCCccccC
Q 012085 405 VDQLIVAVNKMDAVQ--------------YS--KDRFDSIKVQLGTFLRSCGF-KDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 405 vp~IIVVvNKiDl~~--------------~~--~e~~eei~~~L~~~l~~~g~-~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.| +||++||.|+.. +. ...++....-+...+....- ....+....++|.+-.++...+
T Consensus 229 ~p-ill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf 303 (317)
T cd00066 229 TS-IILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVF 303 (317)
T ss_pred CC-EEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHH
Confidence 44 999999999632 11 12234444444444433221 1234556678888777766554
No 399
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.52 E-value=0.00011 Score=74.21 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCCCC-CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHH
Q 012085 351 SPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (471)
Q Consensus 351 TPG~e-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~ 429 (471)
-|||- .-..+....+..+|++|+|+|+..+... ...++..++. +.| +|+|+||+|+.. ....+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~--------~~~~l~~~~~--~kp-~iiVlNK~DL~~--~~~~~~~~ 73 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSS--------ENPMIDKIIG--NKP-RLLILNKSDLAD--PEVTKKWI 73 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCC--------CChhHHHHhC--CCC-EEEEEEchhcCC--HHHHHHHH
Confidence 36643 2445567778889999999999876321 1122333332 444 899999999963 22222222
Q ss_pred HHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.++...+ ..++++||+++.|+.++
T Consensus 74 ----~~~~~~~-----~~vi~vSa~~~~gi~~L 97 (287)
T PRK09563 74 ----EYFEEQG-----IKALAINAKKGQGVKKI 97 (287)
T ss_pred ----HHHHHcC-----CeEEEEECCCcccHHHH
Confidence 2222222 36799999999998764
No 400
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00059 Score=66.79 Aligned_cols=152 Identities=21% Similarity=0.248 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|.++|.--+||||+-....+....-. ..-.+.+..++.+ .+...-..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--------------------------TlflESTski~~d----~is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--------------------------TLFLESTSKITRD----HISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--------------------------eeEeeccCcccHh----hhhhhhcce
Confidence 3499999999999999887775322100 0001111111111 111223578
Q ss_pred EEEeCCCCCCchhhh---hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC---eEEEEEeCCCCCCC
Q 012085 347 VVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNKMDAVQY 420 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~---~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp---~IIVVvNKiDl~~~ 420 (471)
.+||.|||-.+..-. ..-++.+-++|||||+... -..+..+.++-+.+...+. .+=|.+.|.|-+..
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-------y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-------YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-------HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 999999988765443 3456789999999999854 1334555566666665543 36788999998743
Q ss_pred C--hhhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc
Q 012085 421 S--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 421 ~--~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt 455 (471)
. .+....+.++...-+.+.|...-.+.|.-+|..+
T Consensus 151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD 187 (347)
T ss_pred hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc
Confidence 2 2334456677777777778766666777777654
No 401
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.46 E-value=0.00026 Score=69.88 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
-+|.++|-|.+|||||+..|++....++.. .+.|.........+++-++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasy-------------------------------efttl~~vpG~~~y~gaKi 108 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAY-------------------------------EFTTLTTVPGVIRYKGAKI 108 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccc-------------------------------cceeEEEecceEeccccce
Confidence 479999999999999999998643322211 1222222223345678899
Q ss_pred EEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCC
Q 012085 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 347 ~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (471)
+|.|.||..+ -..+.+...+-|.++++|+|+..+
T Consensus 109 qlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 109 QLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred eeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCc
Confidence 9999999543 345566677889999999999987
No 402
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.46 E-value=0.00091 Score=68.63 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+-.+|.|.-|+|||||||+|+..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 345789999999999999999854
No 403
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00047 Score=72.57 Aligned_cols=132 Identities=19% Similarity=0.218 Sum_probs=67.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccc--------cccchhhhHHHhhcCCCccchhccccccccccccceEEEEEE
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRIT--------QKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV 336 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~--------~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~ 336 (471)
.+..|+++|.+|+||||.+..|........ --....+...+..+-. .+. ...|+.+....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~------~~a------~~lgvpv~~~~ 240 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQ------TYG------DIMGIPVKAIE 240 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHH------HHh------hcCCcceEeeC
Confidence 346799999999999999999986533210 0011111111111100 000 01122111111
Q ss_pred EE-------ecCCCeEEEEEeCCCCCCch----hhhhhcccc---CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh
Q 012085 337 AY-------FDSKNYHVVVLDSPGHKDFV----PNMISGATQ---SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS 402 (471)
Q Consensus 337 ~~-------~~~~~~~l~LIDTPG~e~f~----~~~~~~l~~---aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~ 402 (471)
.. -...+..++||||||..... ..+...+.. ..-.+||+|++.+ .....+.+.....
T Consensus 241 ~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~---------~~~~~~~~~~~~~ 311 (388)
T PRK12723 241 SFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK---------TSDVKEIFHQFSP 311 (388)
T ss_pred cHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC---------HHHHHHHHHHhcC
Confidence 00 11256789999999944322 122222222 2358899999966 1222344444434
Q ss_pred cCCCeEEEEEeCCCCCC
Q 012085 403 FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 403 ~~vp~IIVVvNKiDl~~ 419 (471)
.+.. =++++|.|...
T Consensus 312 ~~~~--~~I~TKlDet~ 326 (388)
T PRK12723 312 FSYK--TVIFTKLDETT 326 (388)
T ss_pred CCCC--EEEEEeccCCC
Confidence 4444 46789999863
No 404
>PRK00098 GTPase RsgA; Reviewed
Probab=97.45 E-value=0.00018 Score=73.08 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..++|+|.+|+|||||+|+|++...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3589999999999999999996543
No 405
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.43 E-value=0.00079 Score=69.76 Aligned_cols=132 Identities=15% Similarity=0.113 Sum_probs=81.1
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC---cccc-ccchhhhHHHHHHHHHHh---c
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SFEV-GMNTAKGLTREHAQLIRS---F 403 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g---~~e~-~~~~l~~~~~e~l~ll~~---~ 403 (471)
|.......+...+..+.+||.+|+...+..|..++..++++|||+|.+.- ..+. ....+......+-.++.. .
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 33445555667888999999999999999999999999999999999852 0111 011222222333333332 2
Q ss_pred CCCeEEEEEeCCCCCC--------------CCh-hhHHHHHHHHHHHHHhcCC--CCCCccEEEEecccCCCccccC
Q 012085 404 GVDQLIVAVNKMDAVQ--------------YSK-DRFDSIKVQLGTFLRSCGF--KDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 404 ~vp~IIVVvNKiDl~~--------------~~~-e~~eei~~~L~~~l~~~g~--~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+. |+||++||+|+.. +.. ...+.+..-+...+..... ....+.+..++|.+-.++...+
T Consensus 251 ~~-piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 251 NT-SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred CC-cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHH
Confidence 33 4999999999742 111 2334444444444443322 1234566778888877766554
No 406
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.40 E-value=0.0021 Score=66.61 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
+-.+|.|.-|+||||||++|+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34789999999999999999854
No 407
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.40 E-value=0.00014 Score=77.59 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.+.|++||.|||||||+||+|.|.... .+..++|.|..+..+.+.. .
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV------------------------------sVS~TPGkTKHFQTi~ls~---~ 360 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV------------------------------SVSSTPGKTKHFQTIFLSP---S 360 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee------------------------------eeecCCCCcceeEEEEcCC---C
Confidence 588999999999999999999975443 3344577777766665543 6
Q ss_pred EEEEeCCC
Q 012085 346 VVVLDSPG 353 (471)
Q Consensus 346 l~LIDTPG 353 (471)
+.|.|+||
T Consensus 361 v~LCDCPG 368 (562)
T KOG1424|consen 361 VCLCDCPG 368 (562)
T ss_pred ceecCCCC
Confidence 89999999
No 408
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.37 E-value=0.00047 Score=69.64 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=52.6
Q ss_pred ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCC
Q 012085 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (471)
Q Consensus 364 ~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (471)
-+..+|.+|+|+|+..+.+ ..... ..++..+...++| +|+|+||+|+... ... .. ........+
T Consensus 75 i~anvD~vllV~d~~~p~~-----s~~~l-dr~L~~~~~~~ip-~iIVlNK~DL~~~--~~~---~~-~~~~~~~~g--- 138 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFF-----NPRLL-DRYLVAAEAAGIE-PVIVLTKADLLDD--EEE---EL-ELVEALALG--- 138 (287)
T ss_pred EEEeCCEEEEEEEcCCCCC-----CHHHH-HHHHHHHHHcCCC-EEEEEEHHHCCCh--HHH---HH-HHHHHHhCC---
Confidence 3677999999999987621 12222 3345555666777 8999999999743 111 11 111112233
Q ss_pred CCccEEEEecccCCCccccC
Q 012085 444 ASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 444 ~~i~IIpvSAktG~gI~e~~ 463 (471)
.+++++||++|.|+.++.
T Consensus 139 --~~v~~vSA~~g~gi~~L~ 156 (287)
T cd01854 139 --YPVLAVSAKTGEGLDELR 156 (287)
T ss_pred --CeEEEEECCCCccHHHHH
Confidence 478999999999998754
No 409
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00012 Score=78.91 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|..|+||||++..|.+..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 469999999999999999998754
No 410
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.32 E-value=0.00045 Score=73.59 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
++..|+++|.+|+||||++..|...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999998888754
No 411
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.31 E-value=0.0017 Score=58.26 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH-hcCCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR-SFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~-~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+.++|+|||+.. .......+..+|.+|+|++.+... + ......++.+. ..+..++.+|+|+++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s-------~-~~~~~~l~~l~~~~~~~~~~lVvN~~~~~---- 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTS-------I-TDAYALIKKLAKQLRVLNFRVVVNRAESP---- 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhH-------H-HHHHHHHHHHHHhcCCCCEEEEEeCCCCH----
Confidence 689999999853 333456788899999999988431 1 12233333333 22344588999999743
Q ss_pred hhHHHHHHHHHHHHHh
Q 012085 423 DRFDSIKVQLGTFLRS 438 (471)
Q Consensus 423 e~~eei~~~L~~~l~~ 438 (471)
...+++.+.+++.+..
T Consensus 111 ~~~~~~~~~~~~~~~r 126 (139)
T cd02038 111 KEGKKVFKRLSNVSNR 126 (139)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2334455556655443
No 412
>PRK01889 GTPase RsgA; Reviewed
Probab=97.31 E-value=0.001 Score=69.26 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=53.4
Q ss_pred cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCC
Q 012085 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (471)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (471)
+..+|.+++|+++... +. ......++.++...+++ .+||+||+||... .+.....+..+ . .
T Consensus 110 aANvD~vliV~s~~p~-----~~--~~~ldr~L~~a~~~~i~-piIVLNK~DL~~~----~~~~~~~~~~~--~-----~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHD-----FN--LRRIERYLALAWESGAE-PVIVLTKADLCED----AEEKIAEVEAL--A-----P 170 (356)
T ss_pred EEeCCEEEEEEecCCC-----CC--hhHHHHHHHHHHHcCCC-EEEEEEChhcCCC----HHHHHHHHHHh--C-----C
Confidence 4668999999999744 11 12455667777888998 5789999999743 11122233222 1 2
Q ss_pred CccEEEEecccCCCcccc
Q 012085 445 SLTWIPLSALENQNLVTA 462 (471)
Q Consensus 445 ~i~IIpvSAktG~gI~e~ 462 (471)
..++|++||++|.|+.++
T Consensus 171 g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred CCcEEEEECCCCccHHHH
Confidence 357899999999998764
No 413
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.31 E-value=0.0023 Score=58.62 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.++|||||+.... .....+..+|.+|+|++.... ........++.+...+.+.+.+|+|+++..
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS--------SLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc--------hHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 7999999985433 345567889999999988854 122334455566666666678999999865
No 414
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.28 E-value=0.00032 Score=70.90 Aligned_cols=65 Identities=28% Similarity=0.309 Sum_probs=45.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
....++.|+|.||+|||||+|++........ ........+|+|+.+.....-...
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-------------------------k~a~vG~~pGVT~~V~~~iri~~r 195 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKK-------------------------KAARVGAEPGVTRRVSERIRISHR 195 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhc-------------------------cceeccCCCCceeeehhheEeccC
Confidence 3457899999999999999999874322211 112233458888877664443455
Q ss_pred eEEEEEeCCC
Q 012085 344 YHVVVLDSPG 353 (471)
Q Consensus 344 ~~l~LIDTPG 353 (471)
..+.++||||
T Consensus 196 p~vy~iDTPG 205 (335)
T KOG2485|consen 196 PPVYLIDTPG 205 (335)
T ss_pred CceEEecCCC
Confidence 5699999999
No 415
>PRK13796 GTPase YqeH; Provisional
Probab=97.25 E-value=0.00091 Score=69.85 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=56.4
Q ss_pred hhhccccCC-EEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhc
Q 012085 361 MISGATQSD-AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSC 439 (471)
Q Consensus 361 ~~~~l~~aD-~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~ 439 (471)
.+..+...+ .+++|+|+.+.. .....++.++.. +. ++++|+||+|+... ....+.+...+..+.+..
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~~--~k-pviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFVG--NN-PVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHhhcccCcEEEEEEECccCC--------CchhHHHHHHhC--CC-CEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 566666666 899999997541 122222222221 34 49999999999742 222334444555555556
Q ss_pred CCCCCCccEEEEecccCCCccccCC
Q 012085 440 GFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 440 g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
++.. ..++++||++|.|+.+++.
T Consensus 130 g~~~--~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 130 GLRP--VDVVLISAQKGHGIDELLE 152 (365)
T ss_pred CCCc--CcEEEEECCCCCCHHHHHH
Confidence 6532 2579999999999987654
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.22 E-value=0.0021 Score=55.10 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=42.1
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC---eEEEEEeC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD---QLIVAVNK 414 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp---~IIVVvNK 414 (471)
.++|+|||+... ......+..+|.+|+|++.... -.......++.++..+.+ ++.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLP--------SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChH--------HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 799999998643 3344567889999999988854 223445556666665543 58888886
No 417
>PRK12288 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.0014 Score=68.00 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=52.4
Q ss_pred cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCC
Q 012085 365 ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDA 444 (471)
Q Consensus 365 l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~ 444 (471)
+..+|.+++|++..... + +....+ ++.++...++| +|||+||+|+... .....+. .+...+...+
T Consensus 118 aANvD~vlIV~s~~p~~---s---~~~Ldr-~L~~a~~~~i~-~VIVlNK~DL~~~--~~~~~~~-~~~~~y~~~g---- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL---S---LNIIDR-YLVACETLGIE-PLIVLNKIDLLDD--EGRAFVN-EQLDIYRNIG---- 182 (347)
T ss_pred EEEccEEEEEEeCCCCC---C---HHHHHH-HHHHHHhcCCC-EEEEEECccCCCc--HHHHHHH-HHHHHHHhCC----
Confidence 45589999999876431 2 222333 34455667777 7899999999743 1111122 2222333344
Q ss_pred CccEEEEecccCCCccccCC
Q 012085 445 SLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 445 ~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++++||++|+|+.+++.
T Consensus 183 -~~v~~vSA~tg~GideL~~ 201 (347)
T PRK12288 183 -YRVLMVSSHTGEGLEELEA 201 (347)
T ss_pred -CeEEEEeCCCCcCHHHHHH
Confidence 4789999999999987653
No 418
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0014 Score=67.03 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=25.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
..++..|+|||-.|+||||.|..|.++...
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~ 165 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQ 165 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHH
Confidence 355788999999999999999999877543
No 419
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.00095 Score=70.32 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=69.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccc----cchhhhHHHhhcCCCccchhcccccccccc-ccceEE-EEEEE
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQK----QMHKYEKEAKLQGKGSFAYAWALDESAEER-ERGITM-TVAVA 337 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~----~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~-~~GiTi-~~~~~ 337 (471)
.++..|.++|.-|+||||.+..|..+......+ ....++..+..+-+. .+-....+.+.... ...+.+ .....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~-La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ-LAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH-HHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 456779999999999999999997654321111 111122222111100 00000000000000 000000 00000
Q ss_pred EecCCCeEEEEEeCCCCCCchhhhh------hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEE
Q 012085 338 YFDSKNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (471)
Q Consensus 338 ~~~~~~~~l~LIDTPG~e~f~~~~~------~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVV 411 (471)
.+....+.++|+||+|.......+. ...-.+|-+|||+|+..| +........+-...++- =||
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---------QdA~~~A~aF~e~l~it--GvI 245 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---------QDAVNTAKAFNEALGIT--GVI 245 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---------hHHHHHHHHHhhhcCCc--eEE
Confidence 1222456899999999544433333 334459999999999977 12222222233334444 467
Q ss_pred EeCCCCC
Q 012085 412 VNKMDAV 418 (471)
Q Consensus 412 vNKiDl~ 418 (471)
++|+|--
T Consensus 246 lTKlDGd 252 (451)
T COG0541 246 LTKLDGD 252 (451)
T ss_pred EEcccCC
Confidence 8999964
No 420
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.19 E-value=0.0035 Score=67.98 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=81.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+-..+.|+|..++|||.|++.++|+.-.-.. ........++ ........
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~---------------------------~~~~~~~~av--n~v~~~g~ 472 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNN---------------------------TGTTKPRYAV--NSVEVKGQ 472 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccccc---------------------------ccCCCCceee--eeeeeccc
Confidence 345578999999999999999999963211100 0000111112 22222234
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~ 421 (471)
...+.|-|.+-. ......... ..||++.+|+|.+.+.. + +...+..+.-.. ..+| +++|+.|+|+-+..
T Consensus 473 ~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~s---f----~~~a~v~~~~~~~~~~P-c~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 473 QKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRS---F----EYLAEVYNKYFDLYKIP-CLMVATKADLDEVP 542 (625)
T ss_pred cceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchH---H----HHHHHHHHHhhhccCCc-eEEEeeccccchhh
Confidence 445666666543 111111112 67999999999996622 1 222333332222 3445 99999999986432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL 454 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk 454 (471)
++..-+..+++.++++.++ +.+|.+
T Consensus 543 ----Q~~~iqpde~~~~~~i~~P----~~~S~~ 567 (625)
T KOG1707|consen 543 ----QRYSIQPDEFCRQLGLPPP----IHISSK 567 (625)
T ss_pred ----hccCCChHHHHHhcCCCCC----eeeccC
Confidence 2223333667777787665 666666
No 421
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.00091 Score=75.55 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|||+.|+||||++..|.+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 468999999999999999998754
No 422
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.09 E-value=0.00092 Score=79.60 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=41.0
Q ss_pred eEEEEEeCCC----CC----C-------chhhhhhc--cccCCEEEEEEeCCCCcccc--ccchh-hhHHHHHHHHHHhc
Q 012085 344 YHVVVLDSPG----HK----D-------FVPNMISG--ATQSDAAILVIDASVGSFEV--GMNTA-KGLTREHAQLIRSF 403 (471)
Q Consensus 344 ~~l~LIDTPG----~e----~-------f~~~~~~~--l~~aD~vIlVVDas~g~~e~--~~~~l-~~~~~e~l~ll~~~ 403 (471)
..-+||||+| ++ . |.....++ -+-.++||++||+..-.... ..... ......+.++...+
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l 240 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL 240 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999 22 1 22222222 23499999999998542111 11111 11222223344445
Q ss_pred CCC-eEEEEEeCCCCC
Q 012085 404 GVD-QLIVAVNKMDAV 418 (471)
Q Consensus 404 ~vp-~IIVVvNKiDl~ 418 (471)
+.. ||.||++|||++
T Consensus 241 g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 241 GARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCCEEEEEecchhh
Confidence 542 499999999986
No 423
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0018 Score=64.70 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=78.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..-.++|..||..|.|||||+..|....-.... ..-..+++........+.-.
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p---------------------------~~H~~~~V~L~~~TyelqEs 91 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEP---------------------------STHTLPNVKLQANTYELQES 91 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCC---------------------------CccCCCCceeecchhhhhhc
Confidence 344689999999999999999999842110000 00001222222222222222
Q ss_pred --CeEEEEEeCCCCCC-------------chh-hhh-------------hcc--ccCCEEEEEEeCCCCccccccchhhh
Q 012085 343 --NYHVVVLDSPGHKD-------------FVP-NMI-------------SGA--TQSDAAILVIDASVGSFEVGMNTAKG 391 (471)
Q Consensus 343 --~~~l~LIDTPG~e~-------------f~~-~~~-------------~~l--~~aD~vIlVVDas~g~~e~~~~~l~~ 391 (471)
...++|+||.|.-+ |+. ++. ..+ ...++|+|.|..+... +..
T Consensus 92 nvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~-------LKs 164 (406)
T KOG3859|consen 92 NVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHS-------LKS 164 (406)
T ss_pred CeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcc-------hhH
Confidence 35789999999322 110 111 111 2388999999887431 333
Q ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 392 LTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 392 ~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
.+.-.+.-+.. .+ .||-|+-|.|.. ....+...+..+...|...|.
T Consensus 165 lDLvtmk~Lds-kV-NIIPvIAKaDti--sK~eL~~FK~kimsEL~sngv 210 (406)
T KOG3859|consen 165 LDLVTMKKLDS-KV-NIIPVIAKADTI--SKEELKRFKIKIMSELVSNGV 210 (406)
T ss_pred HHHHHHHHHhh-hh-hhHHHHHHhhhh--hHHHHHHHHHHHHHHHHhcCc
Confidence 33322222221 22 377788999987 556667777777777766664
No 424
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.0019 Score=67.10 Aligned_cols=131 Identities=22% Similarity=0.357 Sum_probs=68.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhcccccccc----chhhhHHHhhcCCCccchhccccccccc-cccceEEEEEEE-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQ----MHKYEKEAKLQGKGSFAYAWALDESAEE-RERGITMTVAVA- 337 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~----v~~~~~~a~~~~~~s~~~~~~~d~~~~e-~~~GiTi~~~~~- 337 (471)
-++-.|.+||.-|+||||.+-.|.++........ ..+++.++. |+.... ...++.+.....
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAf-------------DQLkqnA~k~~iP~ygsyte 165 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAF-------------DQLKQNATKARVPFYGSYTE 165 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchH-------------HHHHHHhHhhCCeeEecccc
Confidence 3455699999999999999999987654322210 011111111 111110 011122211111
Q ss_pred ------------EecCCCeEEEEEeCCCCCC----chhhhh--hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHH
Q 012085 338 ------------YFDSKNYHVVVLDSPGHKD----FVPNMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL 399 (471)
Q Consensus 338 ------------~~~~~~~~l~LIDTPG~e~----f~~~~~--~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l 399 (471)
.+..++..++|+||.|... +..++. ..+-.+|-+|||+|++-| +........+
T Consensus 166 ~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---------Qaae~Qa~aF 236 (483)
T KOG0780|consen 166 ADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---------QAAEAQARAF 236 (483)
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---------HhHHHHHHHH
Confidence 1234678899999999322 333332 233459999999999966 1111111122
Q ss_pred HHhcCCCeEEEEEeCCCCC
Q 012085 400 IRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 400 l~~~~vp~IIVVvNKiDl~ 418 (471)
-...++- -++++|+|-.
T Consensus 237 k~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 237 KETVDVG--AVILTKLDGH 253 (483)
T ss_pred HHhhccc--eEEEEecccC
Confidence 2223333 4668999964
No 425
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.97 E-value=0.00048 Score=71.55 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=43.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++++|+|.||+||||+||+|..... ......+|+|..+....++
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~------------------------------C~vg~~pGvT~smqeV~Ld--- 296 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKA------------------------------CNVGNVPGVTRSMQEVKLD--- 296 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhcc------------------------------ccCCCCccchhhhhheecc---
Confidence 5678999999999999999999984322 1223347787776665544
Q ss_pred eEEEEEeCCCC
Q 012085 344 YHVVVLDSPGH 354 (471)
Q Consensus 344 ~~l~LIDTPG~ 354 (471)
..|.|+|.||.
T Consensus 297 k~i~llDsPgi 307 (435)
T KOG2484|consen 297 KKIRLLDSPGI 307 (435)
T ss_pred CCceeccCCce
Confidence 47999999994
No 426
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0011 Score=70.25 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=81.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccc----cccchhhhHHHhhcCCCcc-chhccccccccccccceEEEEEE
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRIT----QKQMHKYEKEAKLQGKGSF-AYAWALDESAEERERGITMTVAV 336 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~----~~~v~~~~~~a~~~~~~s~-~~~~~~d~~~~e~~~GiTi~~~~ 336 (471)
.+++++.|.+||-.||||||-+-.|+.++..-. ...-.+++.++.++-+... ++...++..-+--+.|.-.+...
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~ 453 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAG 453 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHH
Confidence 456889999999999999999999977643211 1111233344444322111 11111111111111111111000
Q ss_pred ------EEecCCCeEEEEEeCCCCCCchh----hhh--hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC
Q 012085 337 ------AYFDSKNYHVVVLDSPGHKDFVP----NMI--SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG 404 (471)
Q Consensus 337 ------~~~~~~~~~l~LIDTPG~e~f~~----~~~--~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~ 404 (471)
.+-...+..++||||+|...-.. ... -.+..+|.+|+|-.+--|- + ...+.+.+-+.+....
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~-----d-sv~q~~~fn~al~~~~ 527 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGN-----D-SVDQLKKFNRALADHS 527 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCc-----H-HHHHHHHHHHHHhcCC
Confidence 01123567899999999433222 222 2245699999997776551 1 2345566666666655
Q ss_pred CCeE--EEEEeCCCCCC
Q 012085 405 VDQL--IVAVNKMDAVQ 419 (471)
Q Consensus 405 vp~I--IVVvNKiDl~~ 419 (471)
.|+. -|+++|+|.++
T Consensus 528 ~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 528 TPRLIDGILLTKFDTVD 544 (587)
T ss_pred CccccceEEEEeccchh
Confidence 4433 46889999874
No 427
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.86 E-value=0.0012 Score=64.44 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=44.2
Q ss_pred CCeEEEEEeCCCCCCc------hhhhhhccccCC---EEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 342 KNYHVVVLDSPGHKDF------VPNMISGATQSD---AAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f------~~~~~~~l~~aD---~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
...++.|+|+|||.++ ....++.+...+ ++|-++|+. ...+...+.....-.+.-+-.+..|+ |=|+
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~---ycs~p~~~iS~lL~sl~tMl~melph-VNvl 170 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSH---YCSDPSKFISSLLVSLATMLHMELPH-VNVL 170 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeece---eeCChHHHHHHHHHHHHHHHhhcccc-hhhh
Confidence 3568999999996553 333445555544 445556654 33444444444444444445566674 7789
Q ss_pred eCCCCCC
Q 012085 413 NKMDAVQ 419 (471)
Q Consensus 413 NKiDl~~ 419 (471)
.|+|+..
T Consensus 171 SK~Dl~~ 177 (290)
T KOG1533|consen 171 SKADLLK 177 (290)
T ss_pred hHhHHHH
Confidence 9999853
No 428
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.76 E-value=0.0073 Score=60.99 Aligned_cols=28 Identities=25% Similarity=0.139 Sum_probs=22.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhh
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
...+.+--+|.|.-|+|||||+|.++..
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHcc
Confidence 3455566789999999999999999843
No 429
>PRK13695 putative NTPase; Provisional
Probab=96.74 E-value=0.0051 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
++|+|+|.+|+|||||+..|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 430
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.64 E-value=0.01 Score=47.92 Aligned_cols=69 Identities=23% Similarity=0.356 Sum_probs=45.9
Q ss_pred EEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEEE
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVVV 348 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~L 348 (471)
|++.|..|+||||+...|...... .|..+ ..++ .+.|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v----~~~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRV----LLID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeE----EEEC----CEEE
Confidence 688899999999999999842211 01111 0111 7999
Q ss_pred EeCCCCCCchhh-hhhccccCCEEEEEEeCCCC
Q 012085 349 LDSPGHKDFVPN-MISGATQSDAAILVIDASVG 380 (471)
Q Consensus 349 IDTPG~e~f~~~-~~~~l~~aD~vIlVVDas~g 380 (471)
+|+|+....... ....+..+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999995543321 24556679999999988754
No 431
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.64 E-value=0.0094 Score=54.87 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
..+.++|+|||+... ...... +..+|.+|+|+..... -.......++.++..+.+.+-+|+|+++..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~--------s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEV--------ALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchh--------hHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 467899999998632 222222 3678999999988743 235566777888888888667899999864
No 432
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.56 E-value=0.0079 Score=63.67 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=27.4
Q ss_pred CcCCcccceEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 259 KKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 259 ~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
.........+|+|+|.+|+|||||+++|....+.
T Consensus 212 ~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 212 TEVRPFFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred HHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3445566778999999999999999999976443
No 433
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.0036 Score=73.55 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=41.0
Q ss_pred CeEEEEEeCCC----CC----Cchhhh---------hhccccCCEEEEEEeCCCCccccccch--hhhHHHH-HHHHHHh
Q 012085 343 NYHVVVLDSPG----HK----DFVPNM---------ISGATQSDAAILVIDASVGSFEVGMNT--AKGLTRE-HAQLIRS 402 (471)
Q Consensus 343 ~~~l~LIDTPG----~e----~f~~~~---------~~~l~~aD~vIlVVDas~g~~e~~~~~--l~~~~~e-~l~ll~~ 402 (471)
...-+||||+| |. .-...+ .+..+-.++||+-+++..-......+. +-...+. +.++-..
T Consensus 173 ~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t 252 (1188)
T COG3523 173 TDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET 252 (1188)
T ss_pred ccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44678999999 32 111111 223345999999999975433222111 0001111 1122222
Q ss_pred cCC-CeEEEEEeCCCCCC
Q 012085 403 FGV-DQLIVAVNKMDAVQ 419 (471)
Q Consensus 403 ~~v-p~IIVVvNKiDl~~ 419 (471)
+++ .|+.|++||+|++.
T Consensus 253 L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 253 LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred hccCCceEEEEecccccc
Confidence 333 24999999999973
No 434
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.37 E-value=0.0059 Score=57.10 Aligned_cols=53 Identities=21% Similarity=0.161 Sum_probs=32.8
Q ss_pred CEEEEEEeCCCCccccccchhhhHHHHHHHH--HHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHH
Q 012085 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQL--IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (471)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l~l--l~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L 432 (471)
|++++|+|+..+.. ....++.++ +...+.| +|+|+||+|++ +.+.+..+.+.+
T Consensus 1 DvVl~VvDar~p~~--------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~--~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLG--------CRCPQVEEAVLQAGGNKK-LVLVLNKIDLV--PKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCC--------CCCHHHHHHHHhccCCCC-EEEEEehhhcC--CHHHHHHHHHHH
Confidence 78999999987632 222333344 3334455 99999999997 334444444443
No 435
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.35 E-value=0.016 Score=48.75 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g 380 (471)
+.++|+|+|+.... .....+..+|.+|++++....
T Consensus 40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCCHH
Confidence 67999999996432 333677789999999988743
No 436
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.019 Score=59.09 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+++|.-|+|||||++.|.+.
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 45899999999999999999864
No 437
>CHL00175 minD septum-site determining protein; Validated
Probab=96.27 E-value=0.039 Score=55.07 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=45.0
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
.+.++|||||+.. .......+..+|.+|+|++.+.. -.......++++...+.+.+.+|+|+++.
T Consensus 126 ~yD~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~~~--------si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGI--DVGFINAIAPAQEAIVVTTPEIT--------AIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCChH--------HHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 5789999999854 23444556779999999887743 11234455566666666557889999975
No 438
>PHA02518 ParA-like protein; Provisional
Probab=96.24 E-value=0.012 Score=55.53 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=42.0
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~ 418 (471)
..+.++||||||.. .......+..+|.+|+++..+.. ++...... ..++..+... +.+.+.++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPF----DIWAAPDL-VELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChh----hHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 45689999999963 34466778889999999988743 22212111 2222222221 345456777877643
No 439
>PRK01889 GTPase RsgA; Reviewed
Probab=96.20 E-value=0.0048 Score=64.30 Aligned_cols=25 Identities=36% Similarity=0.307 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+++|+|.+|+|||||+|.|++...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3699999999999999999997544
No 440
>KOG4477 consensus RING1 interactor RYBP and related Zn-finger-containing proteins [Transcription]
Probab=96.03 E-value=0.0036 Score=58.38 Aligned_cols=30 Identities=27% Similarity=0.772 Sum_probs=26.7
Q ss_pred CCCCceeecccccCCCCccccccccCCCCC
Q 012085 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 46 ~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
...|.|-|+.|||-|+.....|-||+|...
T Consensus 20 ~Deg~WdCsvCTFrNsAeAfkC~vCdvRKG 49 (228)
T KOG4477|consen 20 DDEGKWDCSVCTFRNSAEAFKCFVCDVRKG 49 (228)
T ss_pred cccCceeeeeeeecchhhhhheeeeccccc
Confidence 356789999999999999999999999763
No 441
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.01 E-value=0.014 Score=60.94 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHH-HhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHH
Q 012085 355 KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (471)
Q Consensus 355 e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll-~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~ 433 (471)
..|...+...+..+|++|.|+||.++... --.+.-+++ ...|-+++|+|+||+|++ +.+.++.+...|+
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgt--------R~~~vE~~V~~~~gnKkLILVLNK~DLV--PrEv~e~Wl~YLr 203 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGT--------RCPEVEEAVLQAHGNKKLILVLNKIDLV--PREVVEKWLVYLR 203 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCC--------CChhHHHHHHhccCCceEEEEeehhccC--CHHHHHHHHHHHH
Confidence 34667777778889999999999988421 122222222 234435699999999999 5677777777776
Q ss_pred HHH
Q 012085 434 TFL 436 (471)
Q Consensus 434 ~~l 436 (471)
..+
T Consensus 204 ~~~ 206 (435)
T KOG2484|consen 204 REG 206 (435)
T ss_pred hhC
Confidence 664
No 442
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.95 E-value=0.016 Score=60.86 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=76.5
Q ss_pred EEEEEEEEecC-CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCcccccc-c-hhhhHHHHHHHHHHh-----
Q 012085 331 TMTVAVAYFDS-KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGM-N-TAKGLTREHAQLIRS----- 402 (471)
Q Consensus 331 Ti~~~~~~~~~-~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~-~-~l~~~~~e~l~ll~~----- 402 (471)
|..+....+.. .+..+.|+|++|+..-+..|...+..++++|||++.+.- .+.. + .......+-+.+...
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~y--dq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEY--DQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGG--GSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccch--hhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 33444555666 889999999999999999999999999999999998732 1110 0 011223333333332
Q ss_pred -cCCCeEEEEEeCCCCCC---------------C-Ch--hhHHHHHHHHHHHHHhcCCCC---CCccEEEEecccCCCcc
Q 012085 403 -FGVDQLIVAVNKMDAVQ---------------Y-SK--DRFDSIKVQLGTFLRSCGFKD---ASLTWIPLSALENQNLV 460 (471)
Q Consensus 403 -~~vp~IIVVvNKiDl~~---------------~-~~--e~~eei~~~L~~~l~~~g~~~---~~i~IIpvSAktG~gI~ 460 (471)
+...++||++||+|+.. + .. ..++....-+...+....... ..+.+..++|.+-.++.
T Consensus 300 ~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~ 379 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR 379 (389)
T ss_dssp GGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred ccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence 22236999999999731 1 01 234444444444444332211 33455677887666554
Q ss_pred cc
Q 012085 461 TA 462 (471)
Q Consensus 461 e~ 462 (471)
..
T Consensus 380 ~v 381 (389)
T PF00503_consen 380 KV 381 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 443
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.92 E-value=0.034 Score=42.83 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=25.9
Q ss_pred cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 367 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 367 ~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
..++++|++|.+... +. .+..|..-..++-..+..+|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~C---Gy-sie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQC---GY-SIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TT---SS--HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCC---CC-CHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 378999999998652 22 24445555445555563445999999998
No 444
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.89 E-value=0.064 Score=51.31 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCCCchhhhhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKi 415 (471)
..+.++||||+|....... ... ++.+|.+|+++..+.. + + ......++.++.+ +.+...+|+|++
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~----s---l-~~~~~l~~~i~~~~~~~~~~~~gvv~N~~ 185 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFM----A---L-YAANNICKGIRKYAKSGGVRLGGLICNSR 185 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHH----H---H-HHHHHHHHHHHHhCcccCCcEEEEEEeCC
Confidence 4678999999885422111 112 2479999999988732 1 1 1122333333333 334346899999
Q ss_pred CCC
Q 012085 416 DAV 418 (471)
Q Consensus 416 Dl~ 418 (471)
+..
T Consensus 186 ~~~ 188 (212)
T cd02117 186 NTD 188 (212)
T ss_pred CCc
Confidence 853
No 445
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.88 E-value=0.053 Score=53.68 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=38.4
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHH-HHHhcCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQ-LIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~-ll~~~~vp~IIVVvNKiDl 417 (471)
.+.++||||||..... .+...+..+|.+|+++.++.. ++.... ...+.+. .....+++.+.+|+|+++.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~----~l~~~~-~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFD----SIFAAN-RIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcc----cHHHHH-HHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 4789999999853221 122347789999999877633 111111 1111121 1122344434578999884
No 446
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.81 E-value=0.003 Score=65.70 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhh
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg 288 (471)
.++.+.|++||.||+||||+||.|..
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~ 329 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRK 329 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhh
Confidence 46678999999999999999999974
No 447
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.81 E-value=0.042 Score=55.86 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=54.7
Q ss_pred CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcc
Q 012085 368 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLT 447 (471)
Q Consensus 368 aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~ 447 (471)
.|-+|+|+.+..+.+ . .......+-++...++.| |||+||+||+... .... +.+......+|+ +
T Consensus 80 ~d~~iiIvs~~~P~~----~--~~~ldR~Lv~ae~~gi~p-vIvlnK~DL~~~~--~~~~--~~~~~~y~~~gy-----~ 143 (301)
T COG1162 80 NDQAIIVVSLVDPDF----N--TNLLDRYLVLAEAGGIEP-VIVLNKIDLLDDE--EAAV--KELLREYEDIGY-----P 143 (301)
T ss_pred cceEEEEEeccCCCC----C--HHHHHHHHHHHHHcCCcE-EEEEEccccCcch--HHHH--HHHHHHHHhCCe-----e
Confidence 677788888887732 1 234555667777888885 6779999999542 2222 344455555665 7
Q ss_pred EEEEecccCCCccccC
Q 012085 448 WIPLSALENQNLVTAP 463 (471)
Q Consensus 448 IIpvSAktG~gI~e~~ 463 (471)
++.+|+++++|+.++.
T Consensus 144 v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 144 VLFVSAKNGDGLEELA 159 (301)
T ss_pred EEEecCcCcccHHHHH
Confidence 7999999999987753
No 448
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.50 E-value=0.053 Score=53.64 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH----hcCCCeEEEEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR----SFGVDQLIVAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~----~~~vp~IIVVvNKiDl 417 (471)
..+.++||||||..... .+...+..+|.+|+++..... ++. .....++.+. ..+++.+.||+|+++.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~----sl~----~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFD----ALF----AANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchh----HHH----HHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 35789999999843211 112346789999998766522 111 1122222222 2344434678899875
No 449
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.043 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg 288 (471)
..++|+|.|+||+|||||+.+|..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHH
Confidence 457899999999999999999974
No 450
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.36 E-value=0.011 Score=50.79 Aligned_cols=23 Identities=43% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|.+|+|||||.+.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998654
No 451
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.24 E-value=0.076 Score=52.25 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=24.8
Q ss_pred CCeEEEEEeCCCCCCchhh-hhhccccCCEEEEEEeCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPN-MISGATQSDAAILVIDASV 379 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~-~~~~l~~aD~vIlVVDas~ 379 (471)
..+.++||||||....... ....+..+|.+|+++.+..
T Consensus 115 ~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 115 DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred cCCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 3578999999985422111 1122336999999988874
No 452
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.10 E-value=0.014 Score=62.96 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=79.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
-..++++|||...+|||.|+.+++.- +| .-.+..+.|... .........
T Consensus 28 ipelk~givg~~~sgktalvhr~ltg----------------------ty-------~~~e~~e~~~~k--kE~vv~gqs 76 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTG----------------------TY-------TQDESPEGGRFK--KEVVVDGQS 76 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccc----------------------ee-------ccccCCcCccce--eeEEeeccc
Confidence 35678999999999999999998721 00 001111121111 111234455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
+.+.+.|-+|+.. ..+....|++|||+..... .+ ++.+...+.++... -.++ ++++.++ |....
T Consensus 77 ~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~---~s---~q~v~~l~~~l~~~r~r~~i~-l~lvgtq-d~iS~ 143 (749)
T KOG0705|consen 77 HLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDE---QS---FQAVQALAHEMSSYRNISDLP-LILVGTQ-DHISA 143 (749)
T ss_pred eEeeeecccCCch-----hhhhhhccceEEEEEeccc---cC---HHHHHHHHhhcccccccccch-HHhhcCc-chhhc
Confidence 6677778777432 2344458899999888743 22 33344444443322 2233 4555443 44322
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+... -..-+.++.++ ....++..+|.+|.++...|++
T Consensus 144 ~~~rv~~-da~~r~l~~~~----krcsy~et~atyGlnv~rvf~~ 183 (749)
T KOG0705|consen 144 KRPRVIT-DDRARQLSAQM----KRCSYYETCATYGLNVERVFQE 183 (749)
T ss_pred ccccccc-hHHHHHHHHhc----CccceeecchhhhhhHHHHHHH
Confidence 2211110 11111222111 2246788999999988776654
No 453
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.02 E-value=0.064 Score=56.94 Aligned_cols=27 Identities=41% Similarity=0.374 Sum_probs=23.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..-+|+|||+.|+|||||+..|+|...
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~ 638 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLD 638 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCC
Confidence 345899999999999999999998643
No 454
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.94 E-value=0.092 Score=51.43 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMD 416 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiD 416 (471)
..+.++||||||... ......+..+|.+|+.+.++.. ++...........+.... .+.+ ..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~----d~~~~~~~~~~v~~~~~~~~~~l~-~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPL----DIDEALSTYRYVIELLLSENLAIP-TAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHH----HHHHHHHHHHHHHHHHHHhCCCCC-eEEEEEecc
Confidence 457899999999664 4455677889999988877632 222221222222222222 2445 678999987
No 455
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=94.89 E-value=0.13 Score=52.01 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl 417 (471)
.+.++||||||.... ..+...+..+|.+|+++.++.. ++.... ...+.++.+.. .+.+..-+|+|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~----sl~~~~-~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFD----ALFAAN-RIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHH----HHHHHH-HHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 578999999985221 1123456779999999887632 111111 11222222221 233334588899873
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.88 E-value=0.018 Score=50.66 Aligned_cols=23 Identities=57% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|..|+|||||++.|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 48999999999999999999643
No 457
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=94.83 E-value=0.063 Score=53.51 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=58.9
Q ss_pred EEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC------CC
Q 012085 333 TVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG------VD 406 (471)
Q Consensus 333 ~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~------vp 406 (471)
.+....|..+...|..+|..||.+-+..|+..+...-++|||+..+.--.-.--+.-+.-.+|.+.+.+... .-
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 344445666778899999999999999999999999999999988743110001112233445555444321 11
Q ss_pred eEEEEEeCCCCC
Q 012085 407 QLIVAVNKMDAV 418 (471)
Q Consensus 407 ~IIVVvNKiDl~ 418 (471)
.+|+.+||.|++
T Consensus 271 svIlFLNKqDll 282 (379)
T KOG0099|consen 271 SVILFLNKQDLL 282 (379)
T ss_pred heeEEecHHHHH
Confidence 389999999986
No 458
>PRK07261 topology modulation protein; Provisional
Probab=94.74 E-value=0.022 Score=53.05 Aligned_cols=22 Identities=45% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 459
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.74 E-value=0.062 Score=57.86 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=51.5
Q ss_pred chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-CeEEEEEeCCCCCCCChhhHHHHHHHHHHH
Q 012085 357 FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNKMDAVQYSKDRFDSIKVQLGTF 435 (471)
Q Consensus 357 f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-p~IIVVvNKiDl~~~~~e~~eei~~~L~~~ 435 (471)
+..+..+.+...|++|.|||+.++.++-+.+ +..+..+... +..|+++||.||+. .+....+. .+
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~d--------Le~Yvke~d~~K~~~LLvNKaDLl~--~~qr~aWa----~Y 229 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPD--------LEDYVKEVDPSKANVLLVNKADLLP--PEQRVAWA----EY 229 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChh--------HHHHHhccccccceEEEEehhhcCC--HHHHHHHH----HH
Confidence 4455667788899999999999996543221 2223333222 34899999999984 33333333 33
Q ss_pred HHhcCCCCCCccEEEEeccc
Q 012085 436 LRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 436 l~~~g~~~~~i~IIpvSAkt 455 (471)
+.. .+|+|+..||+.
T Consensus 230 F~~-----~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 230 FRQ-----NNIPVVFFSALA 244 (562)
T ss_pred HHh-----cCceEEEEeccc
Confidence 333 347899999987
No 460
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.65 E-value=0.022 Score=50.27 Aligned_cols=23 Identities=48% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEcCCCCCchhHhHHHhhhcc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
|+++|.+|+|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999985544
No 461
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.62 E-value=0.016 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
||+|+|.+++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999865
No 462
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.58 E-value=0.032 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.259 Sum_probs=22.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhh
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg 288 (471)
+..+..-|+|+|.+|+|||||+++|..
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 344566799999999999999999974
No 463
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.025 Score=53.29 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
++|+|+|.|||||||+..+|....+
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999986543
No 464
>PRK08233 hypothetical protein; Provisional
Probab=94.53 E-value=0.028 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+.|+|.|.+|+|||||.++|.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46699999999999999999986553
No 465
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.46 E-value=0.17 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.+|+|+|..||||||+.-.|.+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~L 25 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAAL 25 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 368899999999999988876554
No 466
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.43 E-value=0.16 Score=50.33 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=25.3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDAS 378 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas 378 (471)
..+.++||||||...... +...+..+|.+|+++.+.
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~ 151 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND 151 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc
Confidence 357899999998543221 334467799999998765
No 467
>PRK08118 topology modulation protein; Reviewed
Probab=94.39 E-value=0.03 Score=52.01 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+|+|+|.+|+|||||...|....+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999985543
No 468
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.37 E-value=0.033 Score=53.13 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+...|+|+|.+|+|||||++.|.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345699999999999999999987643
No 469
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.32 E-value=0.034 Score=43.52 Aligned_cols=21 Identities=38% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
..+|+|+.|+|||||+.+|..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999973
No 470
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.025 Score=55.82 Aligned_cols=23 Identities=39% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEcCCCCCchhHhHHHhhhcc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
|+|+|++|+|||||++.+.|...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 99999999999999999987543
No 471
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.23 E-value=0.19 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
++|+|.+|+|||||+..|++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998644
No 472
>PRK14530 adenylate kinase; Provisional
Probab=94.16 E-value=0.035 Score=53.26 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
.+|+|+|.+|+||||+.+.|....+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999866553
No 473
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.12 E-value=0.037 Score=46.79 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..++|+|++|+||||++..|+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46999999999999999999853
No 474
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.12 E-value=0.033 Score=52.97 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|++|+|||||+|-+.|-.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhcc
Confidence 49999999999999999998753
No 475
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.06 E-value=0.037 Score=43.65 Aligned_cols=20 Identities=45% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEEcCCCCCchhHhHHHhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg 288 (471)
|+|+|.+|+||||+.++|..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.03 E-value=0.039 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+...|+|+|.+|+|||||++.|....
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998765
No 477
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.00 E-value=0.37 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|.|..||||||+.-.|....
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHH
Confidence 48999999999999988776543
No 478
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.95 E-value=0.033 Score=54.54 Aligned_cols=22 Identities=55% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
-|+|+|++|+|||||+|-|-+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3999999999999999988653
No 479
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.94 E-value=0.035 Score=47.59 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEcCCCCCchhHhHHHhhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~ 289 (471)
|+|.|.+|+|||||++.|.-.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.91 E-value=0.04 Score=51.75 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
.++|+|+.|+|||||++.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 599999999999999998874
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.74 E-value=0.05 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+.+.|+|+|.+|+|||||+.+|+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 44569999999999999999998543
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.73 E-value=0.045 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.|+|+|..|+|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999843
No 483
>COG1161 Predicted GTPases [General function prediction only]
Probab=93.73 E-value=0.12 Score=53.14 Aligned_cols=94 Identities=19% Similarity=0.123 Sum_probs=59.1
Q ss_pred EEeCCCCC-CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 348 LIDTPG~e-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
+-+.|||. .+.......+...|+++.|+|+..+.. .....+.+++.. ++.++|+||+|+.. ....+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~--------s~~~~l~~~v~~---k~~i~vlNK~DL~~--~~~~~ 80 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLG--------TRNPELERIVKE---KPKLLVLNKADLAP--KEVTK 80 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEecccccc--------ccCccHHHHHcc---CCcEEEEehhhcCC--HHHHH
Confidence 44458864 466677788899999999999998732 222333333333 23599999999983 33333
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.+.+.+... .+ +..+.++++.+.++...
T Consensus 81 ~W~~~~~~~---~~-----~~~~~v~~~~~~~~~~i 108 (322)
T COG1161 81 KWKKYFKKE---EG-----IKPIFVSAKSRQGGKKI 108 (322)
T ss_pred HHHHHHHhc---CC-----CccEEEEeecccCccch
Confidence 333333222 22 34588888888877654
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.70 E-value=0.045 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999997654
No 485
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.67 E-value=0.052 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+|||||+++|....+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999985544
No 486
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=93.67 E-value=0.015 Score=65.11 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCCCC-------------CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC--C
Q 012085 342 KNYHVVVLDSPGHK-------------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--D 406 (471)
Q Consensus 342 ~~~~l~LIDTPG~e-------------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v--p 406 (471)
.-..++++|+||.. ++..+...++....++|+.|....- .-.+-+.+.++++... .
T Consensus 130 ~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~---------d~ats~alkiarevDp~g~ 200 (657)
T KOG0446|consen 130 LVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS---------DIATSPALVVAREVDPGGS 200 (657)
T ss_pred CCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh---------hhhcCHHHHHHHhhCCCcc
Confidence 34578999999932 2455667888889999888877532 1234455566655432 2
Q ss_pred eEEEEEeCCCCCC
Q 012085 407 QLIVAVNKMDAVQ 419 (471)
Q Consensus 407 ~IIVVvNKiDl~~ 419 (471)
+.|.|++|.|+..
T Consensus 201 RTigvitK~Dlmd 213 (657)
T KOG0446|consen 201 RTLEVITKFDFMD 213 (657)
T ss_pred chhHHhhhHHhhh
Confidence 4788888888864
No 487
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.64 E-value=0.21 Score=50.29 Aligned_cols=35 Identities=3% Similarity=0.044 Sum_probs=26.1
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDA 377 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDa 377 (471)
+..++|+|.+.+..+.......+..+|.++++-..
T Consensus 87 ~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~ 121 (274)
T PRK14493 87 GMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPT 121 (274)
T ss_pred CCCEEEEECCCCCCCCEEEEEecccCCcEEEecCC
Confidence 56899999999888777777777777755555443
No 488
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.64 E-value=0.044 Score=52.08 Aligned_cols=23 Identities=52% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 489
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.60 E-value=0.045 Score=52.29 Aligned_cols=23 Identities=52% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 49999999999999999999754
No 490
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.59 E-value=0.047 Score=50.89 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+|.|.|.+|+|||||+.+++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998543
No 491
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.047 Score=52.93 Aligned_cols=23 Identities=52% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999754
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.49 E-value=0.05 Score=51.10 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+|||||++.|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999864
No 493
>PRK06217 hypothetical protein; Validated
Probab=93.49 E-value=0.056 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+|+|+|.+|+|||||..+|....+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999986544
No 494
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.48 E-value=0.048 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999754
No 495
>PLN02200 adenylate kinase family protein
Probab=93.47 E-value=0.087 Score=51.71 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
.+.++.|+|+|.||+||||+..+|....+.
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~ 69 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF 69 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999999866553
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.44 E-value=0.05 Score=50.95 Aligned_cols=23 Identities=48% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 497
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.43 E-value=0.048 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|.+|+|||||+++|....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999997653
No 498
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.39 E-value=0.051 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999753
No 499
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.39 E-value=0.049 Score=51.25 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|+.|+|||||++.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5999999999999999999864
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.38 E-value=0.051 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999999754
Done!