Query 012085
Match_columns 471
No_of_seqs 350 out of 2100
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mca_A HBS1, elongation factor 100.0 1.6E-29 5.6E-34 275.1 8.9 202 262-464 173-375 (592)
2 3j2k_7 ERF3, eukaryotic polype 100.0 6.2E-28 2.1E-32 253.9 19.8 201 263-464 14-217 (439)
3 3p26_A Elongation factor 1 alp 99.9 8.2E-28 2.8E-32 255.6 12.0 201 263-464 30-230 (483)
4 3izq_1 HBS1P, elongation facto 99.9 3.2E-27 1.1E-31 257.9 13.5 202 263-465 164-365 (611)
5 1f60_A Elongation factor EEF1A 99.9 1.2E-26 3.9E-31 245.5 14.9 200 264-464 5-204 (458)
6 1jny_A EF-1-alpha, elongation 99.9 3.1E-26 1.1E-30 240.5 15.2 201 264-465 4-206 (435)
7 1r5b_A Eukaryotic peptide chai 99.9 3.3E-26 1.1E-30 242.5 12.7 200 264-464 41-244 (467)
8 1zun_B Sulfate adenylate trans 99.9 2.7E-25 9.3E-30 233.1 17.9 194 264-465 22-217 (434)
9 1d2e_A Elongation factor TU (E 99.9 1.2E-22 4.2E-27 210.6 15.8 170 265-458 2-171 (397)
10 2c78_A Elongation factor TU-A; 99.9 2.4E-22 8.1E-27 208.8 14.0 174 263-460 8-182 (405)
11 1wb1_A Translation elongation 99.9 4.7E-22 1.6E-26 211.5 10.7 165 262-463 15-180 (482)
12 1kk1_A EIF2gamma; initiation o 99.9 1.3E-21 4.5E-26 203.5 12.5 162 263-463 7-191 (410)
13 1s0u_A EIF-2-gamma, translatio 99.8 2E-21 6.9E-26 202.1 11.3 163 263-464 5-190 (408)
14 3avx_A Elongation factor TS, e 99.8 3.7E-21 1.3E-25 219.6 13.6 172 262-457 292-463 (1289)
15 2ew1_A RAS-related protein RAB 99.8 1.6E-20 5.3E-25 176.3 14.3 172 248-464 8-181 (201)
16 4dkx_A RAS-related protein RAB 99.8 2E-20 7E-25 178.7 14.6 159 263-465 10-169 (216)
17 2h57_A ADP-ribosylation factor 99.8 1.4E-20 4.9E-25 172.8 13.0 161 260-465 15-180 (190)
18 3sjy_A Translation initiation 99.8 8.4E-21 2.9E-25 197.1 12.5 176 262-464 4-184 (403)
19 2oil_A CATX-8, RAS-related pro 99.8 1.8E-20 6E-25 172.4 13.2 170 250-464 9-180 (193)
20 2lkc_A Translation initiation 99.8 1.9E-21 6.5E-26 175.5 6.5 154 264-464 6-163 (178)
21 1c1y_A RAS-related protein RAP 99.8 2.1E-20 7.2E-25 166.3 12.9 155 265-464 2-159 (167)
22 3tw8_B RAS-related protein RAB 99.8 3.2E-20 1.1E-24 167.3 14.0 157 264-464 7-163 (181)
23 3clv_A RAB5 protein, putative; 99.8 5.1E-20 1.8E-24 168.3 15.1 104 344-464 93-196 (208)
24 2hxs_A RAB-26, RAS-related pro 99.8 3.1E-20 1.1E-24 167.5 12.9 160 264-464 4-165 (178)
25 1upt_A ARL1, ADP-ribosylation 99.8 4.3E-20 1.5E-24 165.2 13.6 153 265-464 6-161 (171)
26 4bas_A ADP-ribosylation factor 99.8 4E-20 1.4E-24 170.0 13.7 160 261-464 12-181 (199)
27 1kao_A RAP2A; GTP-binding prot 99.8 2.1E-20 7.2E-25 165.7 11.1 154 265-464 2-158 (167)
28 1u8z_A RAS-related protein RAL 99.8 3.4E-20 1.2E-24 164.4 12.3 155 264-464 2-159 (168)
29 3t5g_A GTP-binding protein RHE 99.8 2.8E-20 9.5E-25 168.8 11.9 158 264-464 4-161 (181)
30 1r2q_A RAS-related protein RAB 99.8 6.1E-20 2.1E-24 163.4 13.9 158 264-465 4-162 (170)
31 2a5j_A RAS-related protein RAB 99.8 5.2E-20 1.8E-24 169.4 13.9 169 251-464 6-176 (191)
32 2elf_A Protein translation elo 99.8 2.3E-20 8E-25 192.2 12.3 143 268-463 23-171 (370)
33 2nzj_A GTP-binding protein REM 99.8 4.1E-20 1.4E-24 165.9 12.3 153 265-464 3-161 (175)
34 2h17_A ADP-ribosylation factor 99.8 1.6E-20 5.6E-25 171.4 9.7 165 254-464 9-175 (181)
35 2efe_B Small GTP-binding prote 99.8 9.1E-20 3.1E-24 164.9 14.5 157 263-464 9-167 (181)
36 1ek0_A Protein (GTP-binding pr 99.8 8.4E-20 2.9E-24 162.5 14.1 160 265-465 2-162 (170)
37 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.8E-20 1.6E-24 166.1 12.5 159 264-464 5-166 (177)
38 3tkl_A RAS-related protein RAB 99.8 1.1E-19 3.8E-24 166.6 14.9 155 264-464 14-171 (196)
39 3kkq_A RAS-related protein M-R 99.8 9.5E-20 3.3E-24 165.6 14.2 160 263-465 15-175 (183)
40 2y8e_A RAB-protein 6, GH09086P 99.8 9E-20 3.1E-24 164.0 13.9 157 263-464 11-169 (179)
41 2g6b_A RAS-related protein RAB 99.8 2E-19 6.8E-24 162.5 16.0 156 264-464 8-166 (180)
42 2fg5_A RAB-22B, RAS-related pr 99.8 8.6E-20 2.9E-24 168.4 13.8 156 264-464 21-178 (192)
43 2o52_A RAS-related protein RAB 99.8 2.7E-20 9.3E-25 173.3 10.5 172 248-464 7-180 (200)
44 2gf9_A RAS-related protein RAB 99.8 1.7E-19 5.7E-24 165.6 15.6 157 263-464 19-177 (189)
45 3q72_A GTP-binding protein RAD 99.8 4.7E-20 1.6E-24 164.4 11.2 152 266-464 2-156 (166)
46 1z0j_A RAB-22, RAS-related pro 99.8 1.6E-19 5.4E-24 161.0 14.5 156 264-464 4-161 (170)
47 1z0f_A RAB14, member RAS oncog 99.8 1.2E-19 4.2E-24 163.1 13.9 155 264-464 13-170 (179)
48 1z2a_A RAS-related protein RAB 99.8 1E-19 3.6E-24 161.9 13.2 155 265-464 4-159 (168)
49 2hup_A RAS-related protein RAB 99.8 9.5E-20 3.3E-24 169.9 13.4 166 255-464 18-185 (201)
50 1r8s_A ADP-ribosylation factor 99.8 8.6E-20 2.9E-24 162.4 12.5 152 267-464 1-154 (164)
51 4dhe_A Probable GTP-binding pr 99.8 4.9E-20 1.7E-24 173.2 11.3 159 265-464 28-203 (223)
52 2bov_A RAla, RAS-related prote 99.8 1.2E-19 4.1E-24 167.7 13.4 156 263-464 11-169 (206)
53 1z06_A RAS-related protein RAB 99.8 5.7E-20 2E-24 168.7 11.0 161 260-465 14-181 (189)
54 3bc1_A RAS-related protein RAB 99.8 1.4E-19 4.8E-24 164.7 13.4 156 263-464 8-177 (195)
55 3vqt_A RF-3, peptide chain rel 99.8 2.3E-20 8E-25 201.4 9.7 142 262-421 27-168 (548)
56 1zbd_A Rabphilin-3A; G protein 99.8 3.9E-19 1.3E-23 164.6 16.6 155 265-464 7-163 (203)
57 1z08_A RAS-related protein RAB 99.8 1.9E-19 6.3E-24 160.9 13.9 155 264-464 4-161 (170)
58 2a9k_A RAS-related protein RAL 99.8 9.9E-20 3.4E-24 164.9 12.3 155 264-464 16-173 (187)
59 2fu5_C RAS-related protein RAB 99.8 1.1E-19 3.8E-24 165.1 12.6 156 264-464 6-163 (183)
60 4dsu_A GTPase KRAS, isoform 2B 99.8 1E-19 3.6E-24 165.3 12.3 153 265-464 3-158 (189)
61 3t1o_A Gliding protein MGLA; G 99.8 3.7E-20 1.3E-24 169.2 9.3 169 263-464 11-184 (198)
62 1zd9_A ADP-ribosylation factor 99.8 7.5E-20 2.5E-24 168.2 11.3 157 263-465 19-178 (188)
63 3cb4_D GTP-binding protein LEP 99.8 6.5E-20 2.2E-24 199.6 12.7 167 265-464 3-174 (599)
64 2fn4_A P23, RAS-related protei 99.8 1.3E-19 4.3E-24 163.3 12.5 155 264-464 7-164 (181)
65 1vg8_A RAS-related protein RAB 99.8 2.4E-19 8.2E-24 166.1 14.5 156 264-464 6-167 (207)
66 1ksh_A ARF-like protein 2; sma 99.8 7.9E-20 2.7E-24 166.8 10.9 155 264-464 16-172 (186)
67 1fzq_A ADP-ribosylation factor 99.8 1.6E-19 5.5E-24 165.5 12.8 155 264-465 14-171 (181)
68 1x3s_A RAS-related protein RAB 99.8 6.9E-20 2.3E-24 167.6 10.3 156 263-464 12-170 (195)
69 1zj6_A ADP-ribosylation factor 99.8 8.4E-20 2.9E-24 167.3 10.8 155 264-464 14-170 (187)
70 1ky3_A GTP-binding protein YPT 99.8 5.8E-20 2E-24 165.7 9.4 158 264-464 6-170 (182)
71 2bcg_Y Protein YP2, GTP-bindin 99.8 4.9E-19 1.7E-23 164.6 15.5 156 264-464 6-163 (206)
72 3reg_A RHO-like small GTPase; 99.8 1.4E-19 4.9E-24 166.7 11.8 160 263-464 20-180 (194)
73 2ce2_X GTPase HRAS; signaling 99.8 4.4E-19 1.5E-23 156.7 14.3 153 265-464 2-157 (166)
74 3oes_A GTPase rhebl1; small GT 99.8 1E-19 3.6E-24 169.0 10.8 157 263-465 21-180 (201)
75 2bme_A RAB4A, RAS-related prot 99.8 4.9E-19 1.7E-23 161.0 14.8 155 264-464 8-165 (186)
76 3llu_A RAS-related GTP-binding 99.8 2.3E-19 7.7E-24 166.3 12.8 167 262-465 16-190 (196)
77 2ywe_A GTP-binding protein LEP 99.8 6.2E-20 2.1E-24 199.6 10.1 168 264-464 4-176 (600)
78 1m2o_B GTP-binding protein SAR 99.8 1.1E-19 3.7E-24 168.1 10.3 154 264-464 21-184 (190)
79 2b6h_A ADP-ribosylation factor 99.8 2.3E-19 8E-24 166.1 12.5 155 264-464 27-183 (192)
80 3dz8_A RAS-related protein RAB 99.8 8.9E-20 3E-24 167.9 9.6 157 263-464 20-178 (191)
81 1g16_A RAS-related protein SEC 99.8 3.1E-19 1E-23 159.2 12.8 153 266-464 3-157 (170)
82 2dyk_A GTP-binding protein; GT 99.8 1.6E-19 5.3E-24 160.0 10.3 146 267-464 2-154 (161)
83 1wf3_A GTP-binding protein; GT 99.8 1.8E-19 6.1E-24 180.5 11.8 151 264-464 5-165 (301)
84 2hjg_A GTP-binding protein ENG 99.8 8.2E-20 2.8E-24 191.5 9.5 157 265-464 174-341 (436)
85 2p5s_A RAS and EF-hand domain 99.8 3.5E-19 1.2E-23 165.2 12.6 160 263-464 25-189 (199)
86 3con_A GTPase NRAS; structural 99.8 6.2E-19 2.1E-23 161.4 14.1 156 261-464 16-175 (190)
87 3pqc_A Probable GTP-binding pr 99.8 3.6E-19 1.2E-23 162.5 12.5 153 264-464 21-186 (195)
88 1f6b_A SAR1; gtpases, N-termin 99.8 1.6E-19 5.3E-24 168.3 10.3 154 265-465 24-192 (198)
89 1mh1_A RAC1; GTP-binding, GTPa 99.8 4.1E-19 1.4E-23 160.9 12.8 159 264-464 3-172 (186)
90 1moz_A ARL1, ADP-ribosylation 99.8 1.3E-19 4.4E-24 164.4 9.4 155 264-464 16-172 (183)
91 3gj0_A GTP-binding nuclear pro 99.8 2.5E-19 8.5E-24 168.9 11.7 156 262-464 11-167 (221)
92 2erx_A GTP-binding protein DI- 99.8 4.2E-19 1.4E-23 158.3 12.6 155 265-465 2-160 (172)
93 2il1_A RAB12; G-protein, GDP, 99.8 3.2E-19 1.1E-23 164.7 12.2 157 264-464 24-182 (192)
94 2x77_A ADP-ribosylation factor 99.8 1.9E-19 6.3E-24 165.0 10.4 155 264-464 20-176 (189)
95 3q85_A GTP-binding protein REM 99.8 4.4E-19 1.5E-23 158.6 12.5 154 266-464 2-159 (169)
96 4dcu_A GTP-binding protein ENG 99.8 1.3E-19 4.6E-24 190.9 10.4 159 264-465 193-362 (456)
97 3tr5_A RF-3, peptide chain rel 99.8 2.1E-19 7.2E-24 193.1 12.0 139 264-420 11-149 (528)
98 1zo1_I IF2, translation initia 99.8 1.1E-20 3.6E-25 201.7 1.9 154 265-465 3-160 (501)
99 1svi_A GTP-binding protein YSX 99.8 3.7E-19 1.3E-23 163.2 11.3 154 264-464 21-187 (195)
100 3iev_A GTP-binding protein ERA 99.8 4E-19 1.4E-23 178.2 12.5 155 264-464 8-174 (308)
101 2fh5_B SR-beta, signal recogni 99.8 8.2E-19 2.8E-23 164.0 13.6 162 264-464 5-208 (214)
102 4gzl_A RAS-related C3 botulinu 99.8 5.6E-19 1.9E-23 165.1 12.4 160 263-464 27-197 (204)
103 2wji_A Ferrous iron transport 99.8 1.6E-19 5.4E-24 162.9 8.3 149 265-465 2-158 (165)
104 3cph_A RAS-related protein SEC 99.8 8.3E-19 2.8E-23 163.1 13.5 154 264-464 18-174 (213)
105 2atx_A Small GTP binding prote 99.8 2E-18 6.7E-23 158.8 15.7 159 264-464 16-185 (194)
106 4djt_A GTP-binding nuclear pro 99.8 6.4E-19 2.2E-23 165.3 12.3 156 263-464 8-167 (218)
107 2j0v_A RAC-like GTP-binding pr 99.8 1E-18 3.5E-23 163.1 13.2 159 264-464 7-172 (212)
108 2j1l_A RHO-related GTP-binding 99.8 1.1E-18 3.9E-23 164.2 13.4 160 264-465 32-202 (214)
109 2gco_A H9, RHO-related GTP-bin 99.8 1.4E-18 4.9E-23 161.5 13.9 159 264-464 23-192 (201)
110 3cpj_B GTP-binding protein YPT 99.8 8.2E-19 2.8E-23 166.0 12.3 155 264-464 11-168 (223)
111 2f7s_A C25KG, RAS-related prot 99.8 9.9E-19 3.4E-23 163.8 12.7 157 263-464 22-191 (217)
112 3cbq_A GTP-binding protein REM 99.8 1.6E-18 5.3E-23 161.3 13.9 157 264-465 21-181 (195)
113 2fv8_A H6, RHO-related GTP-bin 99.8 1.6E-18 5.5E-23 161.9 13.8 159 264-464 23-192 (207)
114 2atv_A RERG, RAS-like estrogen 99.8 1.3E-18 4.3E-23 160.8 12.9 157 264-464 26-183 (196)
115 1g7s_A Translation initiation 99.8 6.8E-19 2.3E-23 191.5 12.3 179 264-464 3-210 (594)
116 3ihw_A Centg3; RAS, centaurin, 99.8 2.3E-18 7.9E-23 158.5 14.0 155 261-465 15-173 (184)
117 3bwd_D RAC-like GTP-binding pr 99.8 4.9E-19 1.7E-23 160.1 9.0 159 264-464 6-173 (182)
118 2q3h_A RAS homolog gene family 99.8 2.8E-18 9.7E-23 158.6 14.2 160 263-464 17-187 (201)
119 3iby_A Ferrous iron transport 99.8 2.9E-19 9.9E-24 174.9 7.9 146 267-464 2-159 (256)
120 3izy_P Translation initiation 99.8 1.4E-20 4.8E-25 202.3 -1.6 157 265-464 3-160 (537)
121 2yc2_C IFT27, small RAB-relate 99.8 8E-19 2.7E-23 162.1 10.4 158 264-464 18-184 (208)
122 2gf0_A GTP-binding protein DI- 99.8 1.6E-18 5.4E-23 159.3 12.3 153 264-464 6-163 (199)
123 3i8s_A Ferrous iron transport 99.8 2.5E-19 8.5E-24 176.7 7.4 148 265-464 2-161 (274)
124 3q3j_B RHO-related GTP-binding 99.8 1.7E-18 5.9E-23 163.3 12.8 163 263-465 24-196 (214)
125 3c5c_A RAS-like protein 12; GD 99.8 2.5E-18 8.4E-23 158.4 12.9 156 263-465 18-179 (187)
126 3o47_A ADP-ribosylation factor 99.8 9.7E-19 3.3E-23 177.1 10.5 155 264-465 163-320 (329)
127 2qu8_A Putative nucleolar GTP- 99.8 3.5E-18 1.2E-22 162.4 13.7 160 264-464 27-197 (228)
128 3a1s_A Iron(II) transport prot 99.8 8.7E-19 3E-23 171.6 9.7 149 264-464 3-159 (258)
129 2iwr_A Centaurin gamma 1; ANK 99.8 2.6E-18 9E-23 155.3 12.2 151 264-464 5-161 (178)
130 3j25_A Tetracycline resistance 99.8 2E-19 6.7E-24 197.4 5.0 135 265-421 1-135 (638)
131 1m7b_A RND3/RHOE small GTP-bin 99.8 4.6E-18 1.6E-22 155.5 13.1 161 264-465 5-176 (184)
132 2wjg_A FEOB, ferrous iron tran 99.8 1.3E-18 4.3E-23 158.8 9.3 150 263-464 4-161 (188)
133 3l0i_B RAS-related protein RAB 99.8 1.5E-19 5.2E-24 167.6 2.5 157 264-465 31-189 (199)
134 3r7w_A Gtpase1, GTP-binding pr 99.8 3.9E-18 1.3E-22 170.9 12.8 163 266-464 3-173 (307)
135 3k53_A Ferrous iron transport 99.7 1.5E-18 5E-23 170.3 9.3 148 265-464 2-158 (271)
136 1mky_A Probable GTP-binding pr 99.7 3.8E-18 1.3E-22 179.0 12.5 147 267-464 2-158 (439)
137 2g3y_A GTP-binding protein GEM 99.7 3.8E-18 1.3E-22 162.3 11.3 157 265-465 36-196 (211)
138 2h5e_A Peptide chain release f 99.7 3.1E-18 1.1E-22 184.0 12.0 177 264-464 11-187 (529)
139 3lvq_E ARF-GAP with SH3 domain 99.7 5.5E-18 1.9E-22 179.8 12.2 156 263-465 319-477 (497)
140 2gj8_A MNME, tRNA modification 99.7 1.2E-18 4E-23 158.8 6.0 144 266-464 4-158 (172)
141 1gwn_A RHO-related GTP-binding 99.7 1.1E-17 3.9E-22 157.0 12.6 161 264-465 26-197 (205)
142 3b1v_A Ferrous iron uptake tra 99.7 1.8E-18 6E-23 171.0 7.3 146 266-464 3-156 (272)
143 2cjw_A GTP-binding protein GEM 99.7 1E-17 3.6E-22 155.3 11.8 157 265-465 5-165 (192)
144 2hjg_A GTP-binding protein ENG 99.7 1.1E-18 3.9E-23 182.8 5.8 146 267-464 4-157 (436)
145 4fn5_A EF-G 1, elongation fact 99.7 1.1E-17 3.8E-22 185.5 13.1 148 264-436 11-165 (709)
146 1mky_A Probable GTP-binding pr 99.7 9.6E-18 3.3E-22 175.9 11.8 158 265-465 179-348 (439)
147 1ega_A Protein (GTP-binding pr 99.7 1.2E-17 4E-22 167.1 10.8 152 265-464 7-167 (301)
148 3qq5_A Small GTP-binding prote 99.7 5E-18 1.7E-22 177.7 8.1 149 264-464 32-188 (423)
149 3th5_A RAS-related C3 botulinu 99.6 4.9E-19 1.7E-23 164.6 0.0 161 264-465 28-198 (204)
150 4dcu_A GTP-binding protein ENG 99.7 4.8E-18 1.6E-22 179.0 5.6 151 262-464 19-177 (456)
151 3gee_A MNME, tRNA modification 99.7 5.2E-17 1.8E-21 172.5 12.1 151 265-464 232-390 (476)
152 1n0u_A EF-2, elongation factor 99.7 2.8E-17 9.5E-22 185.5 9.7 172 264-459 17-220 (842)
153 2xex_A Elongation factor G; GT 99.7 6.8E-17 2.3E-21 178.8 12.6 167 264-461 8-174 (693)
154 1dar_A EF-G, elongation factor 99.7 8.1E-17 2.8E-21 178.2 12.9 162 263-453 9-170 (691)
155 2zej_A Dardarin, leucine-rich 99.7 3.8E-17 1.3E-21 149.7 8.4 164 266-464 2-170 (184)
156 2cxx_A Probable GTP-binding pr 99.7 6.4E-18 2.2E-22 153.8 2.7 152 267-464 2-176 (190)
157 2xtp_A GTPase IMAP family memb 99.7 2.3E-17 7.8E-22 160.0 6.4 159 264-464 20-200 (260)
158 3t5d_A Septin-7; GTP-binding p 99.7 2.1E-16 7E-21 155.3 12.5 160 265-463 7-195 (274)
159 2wkq_A NPH1-1, RAS-related C3 99.7 2E-16 6.7E-21 157.1 12.4 158 265-464 154-322 (332)
160 2dy1_A Elongation factor G; tr 99.7 2.3E-16 7.8E-21 173.9 12.9 132 265-418 8-139 (665)
161 1nrj_B SR-beta, signal recogni 99.7 8.4E-17 2.9E-21 150.8 8.1 148 264-458 10-170 (218)
162 1xzp_A Probable tRNA modificat 99.7 6.1E-17 2.1E-21 172.2 7.9 145 267-464 244-397 (482)
163 3lxw_A GTPase IMAP family memb 99.7 2.2E-16 7.4E-21 153.3 10.4 154 263-463 18-199 (247)
164 2rdo_7 EF-G, elongation factor 99.7 5.8E-16 2E-20 171.6 14.8 148 264-436 8-162 (704)
165 3r7w_B Gtpase2, GTP-binding pr 99.6 2.1E-16 7.2E-21 160.1 9.0 160 268-465 1-167 (331)
166 2f9l_A RAB11B, member RAS onco 99.6 1.4E-15 4.8E-20 141.0 13.2 154 266-464 5-160 (199)
167 3geh_A MNME, tRNA modification 99.6 2.5E-16 8.5E-21 166.7 7.9 146 265-464 223-376 (462)
168 3dpu_A RAB family protein; roc 99.6 3.3E-16 1.1E-20 168.1 8.6 153 263-464 38-200 (535)
169 2e87_A Hypothetical protein PH 99.6 2.4E-15 8.2E-20 153.5 14.2 153 265-464 166-328 (357)
170 1lnz_A SPO0B-associated GTP-bi 99.6 9.8E-17 3.3E-21 163.6 2.9 151 267-464 159-322 (342)
171 3lxx_A GTPase IMAP family memb 99.6 1E-15 3.6E-20 146.6 8.1 153 263-455 26-192 (239)
172 3c5h_A Glucocorticoid receptor 99.6 6.8E-16 2.3E-20 150.2 6.6 84 367-465 162-248 (255)
173 3def_A T7I23.11 protein; chlor 99.6 5.7E-15 2E-19 144.1 12.9 121 264-421 34-167 (262)
174 1oix_A RAS-related protein RAB 99.6 8.9E-15 3.1E-19 135.2 13.4 156 264-464 27-184 (191)
175 2aka_B Dynamin-1; fusion prote 99.6 1.6E-15 5.4E-20 149.2 8.7 107 343-464 124-245 (299)
176 2ged_A SR-beta, signal recogni 99.6 5.2E-15 1.8E-19 135.5 9.3 129 264-436 46-185 (193)
177 1pui_A ENGB, probable GTP-bind 99.6 1E-14 3.5E-19 135.5 11.4 154 265-464 25-191 (210)
178 2qtf_A Protein HFLX, GTP-bindi 99.5 3.1E-14 1.1E-18 146.2 13.9 156 267-464 180-346 (364)
179 1h65_A Chloroplast outer envel 99.5 2.8E-14 9.7E-19 139.6 13.0 120 264-420 37-169 (270)
180 1jwy_B Dynamin A GTPase domain 99.5 1.6E-14 5.6E-19 143.3 7.8 71 342-420 129-213 (315)
181 2qag_A Septin-2, protein NEDD5 99.5 2.2E-14 7.5E-19 147.0 8.7 159 265-463 36-224 (361)
182 1wxq_A GTP-binding protein; st 99.5 4E-14 1.4E-18 147.0 9.9 37 344-380 71-114 (397)
183 2j69_A Bacterial dynamin-like 99.5 3.7E-14 1.3E-18 157.0 9.8 111 344-463 174-316 (695)
184 3p32_A Probable GTPase RV1496/ 99.4 1.6E-13 5.6E-18 139.9 9.1 107 340-464 168-276 (355)
185 3t34_A Dynamin-related protein 99.4 1.2E-13 4.1E-18 140.8 7.9 106 342-463 134-252 (360)
186 1udx_A The GTP-binding protein 99.4 4E-13 1.4E-17 140.3 9.6 150 268-464 159-317 (416)
187 2x2e_A Dynamin-1; nitration, h 99.4 1.4E-13 4.8E-18 140.2 5.5 107 343-464 129-250 (353)
188 2qpt_A EH domain-containing pr 99.4 8.6E-13 2.9E-17 142.4 9.7 80 344-433 154-244 (550)
189 2p67_A LAO/AO transport system 99.3 2E-12 6.8E-17 131.3 9.7 105 341-463 146-252 (341)
190 2www_A Methylmalonic aciduria 99.3 2.1E-12 7E-17 131.8 9.7 105 341-463 164-270 (349)
191 2wsm_A Hydrogenase expression/ 99.3 7.8E-13 2.7E-17 124.0 5.9 100 342-464 107-206 (221)
192 1zcb_A G alpha I/13; GTP-bindi 99.3 1.5E-12 5.1E-17 133.7 6.9 131 335-465 192-346 (362)
193 2qnr_A Septin-2, protein NEDD5 99.3 5.8E-12 2E-16 125.9 9.8 160 266-464 18-206 (301)
194 3zvr_A Dynamin-1; hydrolase, D 99.3 1.8E-12 6.3E-17 144.0 6.6 108 342-464 148-270 (772)
195 1yrb_A ATP(GTP)binding protein 99.3 2E-11 6.8E-16 117.5 11.5 111 344-464 109-249 (262)
196 1cip_A Protein (guanine nucleo 99.3 2.4E-12 8.3E-17 131.7 5.3 135 331-465 180-337 (353)
197 4a9a_A Ribosome-interacting GT 99.3 3.8E-12 1.3E-16 131.2 6.6 118 265-418 71-195 (376)
198 2qag_C Septin-7; cell cycle, c 99.2 2.1E-11 7.2E-16 127.4 11.4 159 266-464 31-219 (418)
199 3ohm_A Guanine nucleotide-bind 99.2 2.7E-12 9.3E-17 130.0 4.1 135 331-465 154-311 (327)
200 1jal_A YCHF protein; nucleotid 99.2 2.5E-11 8.4E-16 124.6 9.3 36 344-379 66-108 (363)
201 4fid_A G protein alpha subunit 99.2 9.4E-12 3.2E-16 126.6 4.3 135 331-465 148-321 (340)
202 2dby_A GTP-binding protein; GD 99.1 3.2E-11 1.1E-15 124.0 6.2 37 343-379 68-111 (368)
203 2hf9_A Probable hydrogenase ni 99.0 2.6E-10 8.9E-15 107.1 6.7 99 344-465 119-217 (226)
204 2qm8_A GTPase/ATPase; G protei 99.0 1.7E-09 5.7E-14 109.7 12.5 106 341-463 145-252 (337)
205 3ec1_A YQEH GTPase; atnos1, at 98.9 2.5E-10 8.6E-15 117.2 1.4 116 267-419 163-288 (369)
206 2qag_B Septin-6, protein NEDD5 98.8 5.4E-09 1.8E-13 109.3 9.6 136 266-440 42-209 (427)
207 3h2y_A GTPase family protein; 98.8 5.1E-10 1.7E-14 114.9 1.0 131 267-435 161-301 (368)
208 3sop_A Neuronal-specific septi 98.8 2.4E-08 8.2E-13 98.2 11.7 141 267-441 3-174 (270)
209 1azs_C GS-alpha; complex (lyas 98.8 5.3E-09 1.8E-13 108.6 6.7 82 336-418 209-297 (402)
210 1u0l_A Probable GTPase ENGC; p 98.7 1.3E-08 4.6E-13 101.3 8.1 102 345-464 64-165 (301)
211 2j37_W Signal recognition part 98.7 1.4E-08 4.9E-13 108.3 7.0 66 342-419 182-254 (504)
212 2xtz_A Guanine nucleotide-bind 98.7 5.2E-09 1.8E-13 107.0 3.2 124 342-465 181-338 (354)
213 2ohf_A Protein OLA1, GTP-bindi 98.6 1.4E-08 4.9E-13 105.2 5.1 84 265-379 21-128 (396)
214 1nj3_A NPL4; NZF domain, rubre 98.6 1.7E-08 5.7E-13 67.0 2.2 26 49-74 5-30 (31)
215 2d9g_A YY1-associated factor 2 98.6 2.2E-08 7.7E-13 74.5 2.7 33 44-76 5-37 (53)
216 1tq4_A IIGP1, interferon-induc 98.5 2.7E-07 9.1E-12 96.2 10.5 155 267-462 70-243 (413)
217 3a9j_C Mitogen-activated prote 98.5 3.6E-08 1.2E-12 66.8 2.3 28 48-75 6-33 (34)
218 3dm5_A SRP54, signal recogniti 98.5 3.7E-07 1.3E-11 95.9 11.0 95 342-462 181-281 (443)
219 2crc_A Ubiquitin conjugating e 98.4 1.8E-07 6.2E-12 69.2 4.0 31 47-77 7-37 (52)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.6E-07 1.2E-11 94.6 6.6 86 266-379 20-127 (392)
221 2v3c_C SRP54, signal recogniti 98.3 7.7E-07 2.6E-11 93.2 8.2 66 342-418 179-251 (432)
222 2yv5_A YJEQ protein; hydrolase 98.3 1.1E-06 3.6E-11 87.7 8.7 96 354-464 66-161 (302)
223 3b08_B Ranbp-type and C3HC4-ty 98.3 2.7E-07 9.1E-12 71.0 3.0 30 49-78 7-36 (64)
224 3kl4_A SRP54, signal recogniti 98.3 1.1E-06 3.8E-11 92.0 7.8 93 342-460 178-278 (433)
225 1j8m_F SRP54, signal recogniti 98.2 1.9E-05 6.3E-10 78.6 13.8 95 342-462 179-281 (297)
226 3l82_B F-box only protein 4; T 98.1 1.6E-06 5.3E-11 82.6 5.0 96 353-463 111-214 (227)
227 1puj_A YLQF, conserved hypothe 98.1 1.5E-06 5.3E-11 85.8 4.3 26 265-290 119-144 (282)
228 3e70_C DPA, signal recognition 98.0 7.4E-06 2.5E-10 82.7 7.7 93 343-462 211-310 (328)
229 1f5n_A Interferon-induced guan 98.0 2.9E-06 9.8E-11 92.1 4.9 27 264-290 36-62 (592)
230 3l2o_B F-box only protein 4; s 97.9 5.2E-06 1.8E-10 82.5 4.8 100 351-462 194-298 (312)
231 3ec1_A YQEH GTPase; atnos1, at 97.9 5.3E-06 1.8E-10 85.0 4.3 104 346-464 51-154 (369)
232 1puj_A YLQF, conserved hypothe 97.9 1.2E-05 4.2E-10 79.3 6.7 94 348-463 3-97 (282)
233 3h2y_A GTPase family protein; 97.8 1.2E-05 4E-10 82.4 4.9 98 353-464 55-152 (368)
234 3cnl_A YLQF, putative uncharac 97.8 5.4E-06 1.8E-10 81.0 2.2 23 267-289 100-122 (262)
235 2yhs_A FTSY, cell division pro 97.7 4E-05 1.4E-09 81.5 7.6 26 265-290 292-317 (503)
236 2xxa_A Signal recognition part 97.7 2.8E-05 9.6E-10 81.4 5.8 66 342-418 182-253 (433)
237 3gj3_B Nuclear pore complex pr 97.6 1.7E-05 5.7E-10 53.2 1.7 29 47-75 4-32 (33)
238 3szr_A Interferon-induced GTP- 97.5 6.4E-05 2.2E-09 81.9 5.6 23 268-290 47-69 (608)
239 1t9h_A YLOQ, probable GTPase E 97.5 0.00024 8E-09 71.1 8.5 88 363-464 82-169 (307)
240 1rj9_A FTSY, signal recognitio 97.4 0.00015 5.1E-09 72.4 6.3 26 266-291 102-127 (304)
241 3cnl_A YLQF, putative uncharac 97.4 5.4E-05 1.9E-09 73.8 2.3 88 351-463 4-92 (262)
242 4dzz_A Plasmid partitioning pr 97.3 0.0011 3.6E-08 60.6 10.5 66 342-418 74-143 (206)
243 2ebq_A Nuclear pore complex pr 97.3 0.00015 5.1E-09 52.3 3.1 35 43-77 4-38 (47)
244 1vma_A Cell division protein F 97.2 0.00087 3E-08 66.9 9.2 25 266-290 104-128 (306)
245 2ffh_A Protein (FFH); SRP54, s 97.2 0.00092 3.1E-08 69.7 9.1 27 265-291 97-123 (425)
246 2px0_A Flagellar biosynthesis 97.1 0.00053 1.8E-08 68.0 6.6 25 266-290 105-129 (296)
247 1zu4_A FTSY; GTPase, signal re 97.1 0.00041 1.4E-08 69.6 5.8 26 266-291 105-130 (320)
248 3q5d_A Atlastin-1; G protein, 97.0 0.0015 5.2E-08 68.5 8.8 27 263-289 64-90 (447)
249 1w7p_D VPS36P, YLR417W; ESCRT- 97.0 0.00011 3.9E-09 78.7 0.0 27 50-76 180-206 (566)
250 1ls1_A Signal recognition part 97.0 0.0035 1.2E-07 62.0 10.7 25 266-290 98-122 (295)
251 3gj5_B Nuclear pore complex pr 97.0 0.00027 9.2E-09 47.6 1.6 29 47-75 4-32 (34)
252 3b9q_A Chloroplast SRP recepto 96.9 0.0023 7.9E-08 63.6 8.8 24 267-290 101-124 (302)
253 2ebr_A Nuclear pore complex pr 96.9 0.00061 2.1E-08 49.2 3.1 32 46-77 7-38 (47)
254 2og2_A Putative signal recogni 96.8 0.0016 5.6E-08 66.4 6.6 25 266-290 157-181 (359)
255 3cwq_A Para family chromosome 96.4 0.012 4.2E-07 54.6 9.7 66 342-418 66-133 (209)
256 3end_A Light-independent proto 96.3 0.022 7.5E-07 55.7 10.9 67 342-417 155-225 (307)
257 2rcn_A Probable GTPase ENGC; Y 96.3 0.0099 3.4E-07 60.6 8.5 83 364-462 127-209 (358)
258 1bif_A 6-phosphofructo-2-kinas 96.2 0.00067 2.3E-08 71.3 -0.6 25 265-289 38-62 (469)
259 3gj7_B Nuclear pore complex pr 96.0 0.002 6.8E-08 53.8 1.7 29 47-75 69-97 (98)
260 1t9h_A YLOQ, probable GTPase E 95.8 0.0015 5.3E-08 65.2 -0.1 24 267-290 174-197 (307)
261 1ye8_A Protein THEP1, hypothet 95.5 0.0056 1.9E-07 55.9 2.7 23 268-290 2-24 (178)
262 2ebv_A Nuclear pore complex pr 95.4 0.0072 2.5E-07 45.3 2.4 29 47-75 28-56 (57)
263 1kgd_A CASK, peripheral plasma 95.2 0.0073 2.5E-07 54.6 2.5 23 268-290 7-29 (180)
264 3gj7_B Nuclear pore complex pr 95.2 0.0032 1.1E-07 52.5 0.0 31 47-77 6-36 (98)
265 1lvg_A Guanylate kinase, GMP k 95.2 0.0078 2.7E-07 55.5 2.5 23 268-290 6-28 (198)
266 3tr0_A Guanylate kinase, GMP k 95.0 0.0098 3.4E-07 54.1 2.4 23 268-290 9-31 (205)
267 3a00_A Guanylate kinase, GMP k 94.9 0.011 3.6E-07 53.7 2.4 22 269-290 4-25 (186)
268 1znw_A Guanylate kinase, GMP k 94.9 0.011 3.7E-07 54.6 2.5 23 268-290 22-44 (207)
269 3c8u_A Fructokinase; YP_612366 94.8 0.015 5E-07 53.8 3.2 26 266-291 22-47 (208)
270 2lk0_A RNA-binding protein 5; 94.8 0.01 3.5E-07 39.3 1.4 28 48-75 3-30 (32)
271 1cp2_A CP2, nitrogenase iron p 94.7 0.1 3.4E-06 49.6 9.1 68 342-417 114-186 (269)
272 3ney_A 55 kDa erythrocyte memb 94.7 0.015 5.2E-07 54.3 3.0 27 265-291 18-44 (197)
273 1z6g_A Guanylate kinase; struc 94.7 0.013 4.4E-07 54.9 2.5 22 269-290 26-47 (218)
274 1zp6_A Hypothetical protein AT 94.6 0.016 5.6E-07 52.0 2.9 23 267-289 10-32 (191)
275 1s96_A Guanylate kinase, GMP k 94.5 0.015 5.1E-07 54.9 2.4 24 268-291 18-41 (219)
276 3asz_A Uridine kinase; cytidin 94.5 0.018 6.1E-07 52.8 2.9 26 266-291 6-31 (211)
277 1knq_A Gluconate kinase; ALFA/ 94.4 0.023 7.7E-07 50.5 3.4 25 267-291 9-33 (175)
278 1kag_A SKI, shikimate kinase I 94.3 0.019 6.3E-07 50.8 2.6 24 268-291 6-29 (173)
279 2j41_A Guanylate kinase; GMP, 94.2 0.022 7.5E-07 51.7 2.9 24 267-290 7-30 (207)
280 2rcn_A Probable GTPase ENGC; Y 94.2 0.018 6.2E-07 58.6 2.6 24 268-291 217-240 (358)
281 3tif_A Uncharacterized ABC tra 94.2 0.018 6.2E-07 54.8 2.3 23 268-290 33-55 (235)
282 4eun_A Thermoresistant glucoki 94.1 0.023 7.9E-07 52.0 2.9 26 267-292 30-55 (200)
283 3lw7_A Adenylate kinase relate 94.1 0.022 7.4E-07 49.6 2.5 24 267-291 2-25 (179)
284 4ido_A Atlastin-1; GTPase, GTP 94.1 0.14 4.9E-06 53.6 9.1 25 264-288 65-89 (457)
285 3tau_A Guanylate kinase, GMP k 94.1 0.021 7.1E-07 52.9 2.4 23 268-290 10-32 (208)
286 1htw_A HI0065; nucleotide-bind 94.0 0.022 7.6E-07 51.0 2.5 23 268-290 35-57 (158)
287 2k1p_A Zinc finger RAN-binding 94.0 0.033 1.1E-06 37.0 2.7 29 47-75 3-31 (33)
288 1tev_A UMP-CMP kinase; ploop, 94.0 0.026 8.8E-07 50.5 2.9 27 265-291 2-28 (196)
289 3kb2_A SPBC2 prophage-derived 94.0 0.025 8.4E-07 49.6 2.7 24 268-291 3-26 (173)
290 2pcj_A ABC transporter, lipopr 94.0 0.022 7.4E-07 53.8 2.4 23 268-290 32-54 (224)
291 3t61_A Gluconokinase; PSI-biol 94.0 0.024 8.3E-07 51.7 2.7 25 267-291 19-43 (202)
292 4gp7_A Metallophosphoesterase; 94.0 0.02 6.9E-07 51.3 2.1 21 268-288 11-31 (171)
293 1kht_A Adenylate kinase; phosp 93.9 0.025 8.5E-07 50.5 2.6 25 267-291 4-28 (192)
294 3b85_A Phosphate starvation-in 93.9 0.027 9.3E-07 52.7 2.9 22 268-289 24-45 (208)
295 1cke_A CK, MSSA, protein (cyti 93.8 0.027 9.2E-07 52.0 2.7 25 267-291 6-30 (227)
296 1qhx_A CPT, protein (chloramph 93.8 0.028 9.5E-07 49.9 2.7 24 267-290 4-27 (178)
297 2cbz_A Multidrug resistance-as 93.8 0.025 8.6E-07 53.9 2.5 23 268-290 33-55 (237)
298 1ly1_A Polynucleotide kinase; 93.8 0.03 1E-06 49.5 2.8 22 267-288 3-24 (181)
299 2bdt_A BH3686; alpha-beta prot 93.8 0.026 8.9E-07 50.8 2.5 22 268-289 4-25 (189)
300 2bbw_A Adenylate kinase 4, AK4 93.7 0.028 9.6E-07 53.1 2.8 23 267-289 28-50 (246)
301 1mv5_A LMRA, multidrug resista 93.7 0.026 9E-07 53.9 2.5 23 268-290 30-52 (243)
302 2onk_A Molybdate/tungstate ABC 93.7 0.028 9.5E-07 53.8 2.7 23 268-290 26-48 (240)
303 3zvl_A Bifunctional polynucleo 93.7 0.077 2.6E-06 54.7 6.2 26 264-289 256-281 (416)
304 2qor_A Guanylate kinase; phosp 93.7 0.026 8.8E-07 51.8 2.3 24 267-290 13-36 (204)
305 2jeo_A Uridine-cytidine kinase 93.7 0.035 1.2E-06 52.6 3.3 26 266-291 25-50 (245)
306 2jaq_A Deoxyguanosine kinase; 93.7 0.03 1E-06 50.5 2.7 24 268-291 2-25 (205)
307 2pze_A Cystic fibrosis transme 93.7 0.028 9.4E-07 53.3 2.5 23 268-290 36-58 (229)
308 2ff7_A Alpha-hemolysin translo 93.6 0.028 9.5E-07 54.0 2.5 23 268-290 37-59 (247)
309 1b0u_A Histidine permease; ABC 93.6 0.026 8.7E-07 54.7 2.3 23 268-290 34-56 (262)
310 1u0l_A Probable GTPase ENGC; p 93.6 0.026 8.9E-07 55.6 2.4 23 268-290 171-193 (301)
311 3lnc_A Guanylate kinase, GMP k 93.6 0.025 8.5E-07 52.9 2.1 23 268-290 29-52 (231)
312 2plr_A DTMP kinase, probable t 93.6 0.034 1.2E-06 50.4 3.0 26 266-291 4-29 (213)
313 1g6h_A High-affinity branched- 93.6 0.029 9.7E-07 54.1 2.5 23 268-290 35-57 (257)
314 1sgw_A Putative ABC transporte 93.6 0.027 9.3E-07 53.0 2.3 22 269-290 38-59 (214)
315 1ex7_A Guanylate kinase; subst 93.6 0.029 9.9E-07 51.8 2.4 22 269-290 4-25 (186)
316 3fb4_A Adenylate kinase; psych 93.5 0.034 1.2E-06 51.1 2.9 24 268-291 2-25 (216)
317 2d2e_A SUFC protein; ABC-ATPas 93.5 0.032 1.1E-06 53.6 2.7 22 268-289 31-52 (250)
318 4g1u_C Hemin import ATP-bindin 93.5 0.029 9.8E-07 54.6 2.4 23 268-290 39-61 (266)
319 2v9p_A Replication protein E1; 93.5 0.031 1.1E-06 55.7 2.7 23 268-290 128-150 (305)
320 1ji0_A ABC transporter; ATP bi 93.5 0.031 1.1E-06 53.3 2.5 23 268-290 34-56 (240)
321 3gj8_B Nuclear pore complex pr 93.5 0.026 8.9E-07 46.3 1.8 29 47-75 62-90 (92)
322 3gfo_A Cobalt import ATP-bindi 93.5 0.03 1E-06 54.7 2.5 23 268-290 36-58 (275)
323 1uj2_A Uridine-cytidine kinase 93.5 0.038 1.3E-06 52.6 3.1 28 264-291 20-47 (252)
324 2ghi_A Transport protein; mult 93.4 0.031 1.1E-06 54.0 2.5 23 268-290 48-70 (260)
325 2if2_A Dephospho-COA kinase; a 93.4 0.033 1.1E-06 50.7 2.6 22 267-288 2-23 (204)
326 3dl0_A Adenylate kinase; phosp 93.4 0.037 1.3E-06 50.9 3.0 24 268-291 2-25 (216)
327 2i3b_A HCR-ntpase, human cance 93.4 0.03 1E-06 51.6 2.2 23 268-290 3-25 (189)
328 2rhm_A Putative kinase; P-loop 93.4 0.038 1.3E-06 49.5 2.9 26 266-291 5-30 (193)
329 3cm0_A Adenylate kinase; ATP-b 93.4 0.039 1.3E-06 49.2 2.9 26 266-291 4-29 (186)
330 1g3q_A MIND ATPase, cell divis 93.4 0.18 6.3E-06 46.6 7.7 66 343-418 111-176 (237)
331 2olj_A Amino acid ABC transpor 93.4 0.033 1.1E-06 54.1 2.5 23 268-290 52-74 (263)
332 2yv5_A YJEQ protein; hydrolase 93.4 0.034 1.2E-06 54.9 2.7 23 267-290 166-188 (302)
333 2zu0_C Probable ATP-dependent 93.3 0.035 1.2E-06 53.9 2.7 22 268-289 48-69 (267)
334 2qi9_C Vitamin B12 import ATP- 93.3 0.034 1.1E-06 53.6 2.5 23 268-290 28-50 (249)
335 3vaa_A Shikimate kinase, SK; s 93.3 0.04 1.4E-06 50.3 2.9 25 267-291 26-50 (199)
336 2ixe_A Antigen peptide transpo 93.3 0.034 1.2E-06 54.1 2.5 23 268-290 47-69 (271)
337 1vpl_A ABC transporter, ATP-bi 93.3 0.034 1.2E-06 53.7 2.5 23 268-290 43-65 (256)
338 3uie_A Adenylyl-sulfate kinase 93.3 0.042 1.4E-06 50.2 3.0 24 267-290 26-49 (200)
339 3gj8_B Nuclear pore complex pr 93.2 0.015 5.3E-07 47.7 0.0 29 48-76 6-34 (92)
340 1np6_A Molybdopterin-guanine d 93.2 0.041 1.4E-06 50.1 2.8 23 267-289 7-29 (174)
341 3kjh_A CO dehydrogenase/acetyl 93.2 0.093 3.2E-06 48.7 5.4 65 342-416 130-194 (254)
342 2ihy_A ABC transporter, ATP-bi 93.2 0.035 1.2E-06 54.3 2.5 23 268-290 49-71 (279)
343 4a74_A DNA repair and recombin 93.2 0.035 1.2E-06 51.0 2.4 22 268-289 27-48 (231)
344 2eyu_A Twitching motility prot 93.2 0.038 1.3E-06 53.5 2.7 23 268-290 27-49 (261)
345 2ph1_A Nucleotide-binding prot 93.2 0.19 6.4E-06 47.9 7.5 67 342-417 127-194 (262)
346 2vli_A Antibiotic resistance p 93.2 0.039 1.3E-06 49.1 2.5 26 266-291 5-30 (183)
347 2yz2_A Putative ABC transporte 93.1 0.037 1.3E-06 53.6 2.5 23 268-290 35-57 (266)
348 1nks_A Adenylate kinase; therm 93.1 0.041 1.4E-06 49.0 2.7 24 268-291 3-26 (194)
349 3aez_A Pantothenate kinase; tr 93.1 0.047 1.6E-06 54.3 3.3 26 265-290 89-114 (312)
350 2qt1_A Nicotinamide riboside k 93.1 0.051 1.8E-06 49.7 3.3 25 266-290 21-45 (207)
351 2nq2_C Hypothetical ABC transp 93.0 0.038 1.3E-06 53.2 2.5 23 268-290 33-55 (253)
352 1jjv_A Dephospho-COA kinase; P 93.0 0.046 1.6E-06 49.9 2.8 22 267-288 3-24 (206)
353 3trf_A Shikimate kinase, SK; a 93.0 0.049 1.7E-06 48.6 2.9 25 267-291 6-30 (185)
354 2ehv_A Hypothetical protein PH 92.9 0.041 1.4E-06 51.2 2.4 21 268-288 32-52 (251)
355 1y63_A LMAJ004144AAA protein; 92.9 0.051 1.7E-06 49.0 3.0 24 266-289 10-33 (184)
356 3iij_A Coilin-interacting nucl 92.9 0.047 1.6E-06 48.7 2.6 26 266-291 11-36 (180)
357 2c95_A Adenylate kinase 1; tra 92.9 0.05 1.7E-06 48.8 2.8 26 266-291 9-34 (196)
358 1uf9_A TT1252 protein; P-loop, 92.9 0.051 1.7E-06 49.0 2.9 25 265-289 7-31 (203)
359 1qf9_A UMP/CMP kinase, protein 92.9 0.06 2E-06 47.9 3.3 25 267-291 7-31 (194)
360 2cdn_A Adenylate kinase; phosp 92.8 0.056 1.9E-06 49.2 3.2 28 264-291 18-45 (201)
361 2f1r_A Molybdopterin-guanine d 92.8 0.025 8.5E-07 51.4 0.7 23 268-290 4-26 (171)
362 3ec2_A DNA replication protein 92.8 0.042 1.4E-06 49.1 2.3 24 267-290 39-62 (180)
363 2v54_A DTMP kinase, thymidylat 92.8 0.052 1.8E-06 49.1 2.9 25 266-290 4-28 (204)
364 1nn5_A Similar to deoxythymidy 92.8 0.051 1.7E-06 49.5 2.8 24 266-289 9-32 (215)
365 1aky_A Adenylate kinase; ATP:A 92.8 0.051 1.8E-06 50.2 2.8 26 266-291 4-29 (220)
366 3tlx_A Adenylate kinase 2; str 92.7 0.057 1.9E-06 51.3 3.2 27 265-291 28-54 (243)
367 1ukz_A Uridylate kinase; trans 92.7 0.071 2.4E-06 48.4 3.7 27 265-291 14-40 (203)
368 2wwf_A Thymidilate kinase, put 92.7 0.049 1.7E-06 49.6 2.6 25 266-290 10-34 (212)
369 2pjz_A Hypothetical protein ST 92.7 0.046 1.6E-06 53.1 2.5 23 268-290 32-54 (263)
370 2vp4_A Deoxynucleoside kinase; 92.7 0.064 2.2E-06 50.3 3.5 24 266-289 20-43 (230)
371 3nh6_A ATP-binding cassette SU 92.6 0.033 1.1E-06 55.4 1.3 23 268-290 82-104 (306)
372 1lw7_A Transcriptional regulat 92.5 0.042 1.5E-06 55.4 2.1 26 267-292 171-196 (365)
373 1zd8_A GTP:AMP phosphotransfer 92.5 0.056 1.9E-06 50.3 2.7 26 266-291 7-32 (227)
374 2yvu_A Probable adenylyl-sulfa 92.5 0.072 2.5E-06 47.8 3.3 26 265-290 12-37 (186)
375 2bbs_A Cystic fibrosis transme 92.4 0.052 1.8E-06 53.5 2.4 23 268-290 66-88 (290)
376 2kjq_A DNAA-related protein; s 92.4 0.063 2.2E-06 47.3 2.8 22 268-289 38-59 (149)
377 1nij_A Hypothetical protein YJ 92.4 0.064 2.2E-06 53.2 3.1 25 266-290 4-28 (318)
378 2j9u_B VPS36, vacuolar protein 92.3 0.033 1.1E-06 43.8 0.7 26 50-75 17-51 (76)
379 3tqc_A Pantothenate kinase; bi 92.3 0.07 2.4E-06 53.4 3.3 29 263-291 89-117 (321)
380 2pt5_A Shikimate kinase, SK; a 92.3 0.061 2.1E-06 47.1 2.5 24 268-291 2-25 (168)
381 1odf_A YGR205W, hypothetical 3 92.2 0.072 2.5E-06 52.4 3.3 27 265-291 30-56 (290)
382 1rz3_A Hypothetical protein rb 92.2 0.07 2.4E-06 48.9 3.0 25 266-290 22-46 (201)
383 4e22_A Cytidylate kinase; P-lo 92.2 0.071 2.4E-06 50.9 3.1 25 267-291 28-52 (252)
384 1xjc_A MOBB protein homolog; s 92.2 0.066 2.2E-06 48.7 2.7 23 267-289 5-27 (169)
385 1sq5_A Pantothenate kinase; P- 92.1 0.069 2.4E-06 52.6 3.0 26 266-291 80-105 (308)
386 2pt7_A CAG-ALFA; ATPase, prote 92.1 0.054 1.9E-06 54.2 2.2 23 268-290 173-195 (330)
387 1gvn_B Zeta; postsegregational 92.1 0.082 2.8E-06 51.7 3.4 26 265-290 32-57 (287)
388 1e4v_A Adenylate kinase; trans 92.1 0.066 2.3E-06 49.3 2.6 24 268-291 2-25 (214)
389 2gza_A Type IV secretion syste 92.0 0.054 1.8E-06 54.8 2.1 23 268-290 177-199 (361)
390 1zak_A Adenylate kinase; ATP:A 92.0 0.061 2.1E-06 49.8 2.3 25 267-291 6-30 (222)
391 2pbr_A DTMP kinase, thymidylat 91.9 0.071 2.4E-06 47.6 2.5 23 268-290 2-24 (195)
392 2bwj_A Adenylate kinase 5; pho 91.9 0.068 2.3E-06 48.0 2.4 25 267-291 13-37 (199)
393 1vht_A Dephospho-COA kinase; s 91.9 0.078 2.7E-06 48.9 2.8 23 266-288 4-26 (218)
394 1via_A Shikimate kinase; struc 91.8 0.066 2.3E-06 47.6 2.3 24 268-291 6-29 (175)
395 3tui_C Methionine import ATP-b 91.8 0.065 2.2E-06 54.7 2.5 23 268-290 56-78 (366)
396 2p5t_B PEZT; postsegregational 91.8 0.075 2.6E-06 50.6 2.7 27 265-291 31-57 (253)
397 3fvq_A Fe(3+) IONS import ATP- 91.7 0.066 2.3E-06 54.5 2.4 23 268-290 32-54 (359)
398 3jvv_A Twitching mobility prot 91.7 0.073 2.5E-06 54.0 2.7 23 268-290 125-147 (356)
399 1hyq_A MIND, cell division inh 91.7 0.21 7.3E-06 47.1 5.8 66 343-418 110-175 (263)
400 2z0h_A DTMP kinase, thymidylat 91.6 0.082 2.8E-06 47.4 2.7 23 268-290 2-24 (197)
401 1gtv_A TMK, thymidylate kinase 91.6 0.039 1.3E-06 50.3 0.5 23 268-290 2-24 (214)
402 1z47_A CYSA, putative ABC-tran 91.6 0.071 2.4E-06 54.1 2.5 23 268-290 43-65 (355)
403 1n0z_A ZNF265; zinc finger, RN 91.5 0.14 4.8E-06 36.4 3.2 30 47-76 11-42 (45)
404 2yyz_A Sugar ABC transporter, 91.5 0.075 2.6E-06 54.0 2.5 23 268-290 31-53 (359)
405 2ewv_A Twitching motility prot 91.5 0.08 2.7E-06 53.9 2.7 23 268-290 138-160 (372)
406 3ug7_A Arsenical pump-driving 91.4 0.91 3.1E-05 45.4 10.4 82 368-459 237-322 (349)
407 3be4_A Adenylate kinase; malar 91.4 0.09 3.1E-06 48.7 2.8 25 267-291 6-30 (217)
408 2it1_A 362AA long hypothetical 91.4 0.077 2.6E-06 54.0 2.5 23 268-290 31-53 (362)
409 2pez_A Bifunctional 3'-phospho 91.4 0.094 3.2E-06 46.7 2.8 25 266-290 5-29 (179)
410 1g29_1 MALK, maltose transport 91.4 0.078 2.7E-06 54.1 2.5 23 268-290 31-53 (372)
411 4a1f_A DNAB helicase, replicat 91.3 0.25 8.5E-06 49.8 6.1 66 345-411 129-202 (338)
412 3rlf_A Maltose/maltodextrin im 91.3 0.079 2.7E-06 54.3 2.5 24 268-291 31-54 (381)
413 2x8a_A Nuclear valosin-contain 91.3 0.087 3E-06 51.1 2.6 23 269-291 47-69 (274)
414 3kta_A Chromosome segregation 91.2 0.086 3E-06 46.9 2.4 24 268-291 28-51 (182)
415 3ea0_A ATPase, para family; al 91.2 0.43 1.5E-05 44.2 7.3 66 343-418 118-185 (245)
416 1v43_A Sugar-binding transport 91.2 0.082 2.8E-06 54.0 2.5 23 268-290 39-61 (372)
417 3sr0_A Adenylate kinase; phosp 91.2 0.1 3.5E-06 48.7 2.8 27 267-293 1-27 (206)
418 2iyv_A Shikimate kinase, SK; t 91.1 0.088 3E-06 47.0 2.3 24 268-291 4-27 (184)
419 1e6c_A Shikimate kinase; phosp 91.1 0.091 3.1E-06 46.1 2.3 24 268-291 4-27 (173)
420 2w0m_A SSO2452; RECA, SSPF, un 91.0 0.094 3.2E-06 47.9 2.5 22 268-289 25-46 (235)
421 3bh0_A DNAB-like replicative h 91.0 0.37 1.2E-05 47.6 6.9 21 269-289 71-91 (315)
422 3a4m_A L-seryl-tRNA(SEC) kinas 91.0 0.11 3.7E-06 49.8 2.9 23 267-289 5-27 (260)
423 3r20_A Cytidylate kinase; stru 90.9 0.1 3.6E-06 49.8 2.7 27 265-291 8-34 (233)
424 2xb4_A Adenylate kinase; ATP-b 90.9 0.1 3.5E-06 48.6 2.6 24 268-291 2-25 (223)
425 1ixz_A ATP-dependent metallopr 90.8 0.1 3.5E-06 49.2 2.6 23 268-290 51-73 (254)
426 1ak2_A Adenylate kinase isoenz 90.8 0.12 4E-06 48.5 2.9 26 266-291 16-41 (233)
427 2oap_1 GSPE-2, type II secreti 90.8 0.088 3E-06 56.0 2.3 24 267-290 261-284 (511)
428 1jbk_A CLPB protein; beta barr 90.8 0.12 4.2E-06 45.1 2.8 22 267-288 44-65 (195)
429 1zuh_A Shikimate kinase; alpha 90.7 0.12 4E-06 45.5 2.7 24 268-291 9-32 (168)
430 2vhj_A Ntpase P4, P4; non- hyd 90.6 0.16 5.6E-06 51.0 3.9 21 268-288 125-145 (331)
431 1p9r_A General secretion pathw 90.6 0.1 3.5E-06 54.1 2.5 23 268-290 169-191 (418)
432 3d31_A Sulfate/molybdate ABC t 90.6 0.071 2.4E-06 53.9 1.3 23 268-290 28-50 (348)
433 2ze6_A Isopentenyl transferase 90.6 0.11 3.9E-06 49.6 2.6 24 268-291 3-26 (253)
434 3la6_A Tyrosine-protein kinase 90.5 0.55 1.9E-05 45.8 7.5 66 344-418 202-267 (286)
435 3gd7_A Fusion complex of cysti 90.4 0.11 3.9E-06 53.3 2.6 23 268-290 49-71 (390)
436 2f6r_A COA synthase, bifunctio 90.3 0.13 4.4E-06 50.0 2.8 23 265-287 74-96 (281)
437 1cr0_A DNA primase/helicase; R 90.3 0.11 3.9E-06 50.2 2.4 22 269-290 38-59 (296)
438 3ake_A Cytidylate kinase; CMP 90.3 0.14 4.9E-06 46.2 2.9 24 268-291 4-27 (208)
439 3zq6_A Putative arsenical pump 90.2 1.2 4.2E-05 43.9 9.9 82 369-460 223-308 (324)
440 3umf_A Adenylate kinase; rossm 90.1 0.17 5.8E-06 47.7 3.4 28 265-292 28-55 (217)
441 1q3t_A Cytidylate kinase; nucl 90.1 0.15 5.1E-06 47.8 3.0 29 263-291 13-41 (236)
442 3k9g_A PF-32 protein; ssgcid, 90.1 0.96 3.3E-05 42.7 8.7 66 342-417 143-209 (267)
443 1oxx_K GLCV, glucose, ABC tran 90.0 0.069 2.3E-06 54.1 0.6 23 268-290 33-55 (353)
444 2npi_A Protein CLP1; CLP1-PCF1 90.0 0.11 3.8E-06 54.5 2.2 23 268-290 140-162 (460)
445 3nwj_A ATSK2; P loop, shikimat 90.0 0.12 4.1E-06 49.7 2.3 25 267-291 49-73 (250)
446 1m7g_A Adenylylsulfate kinase; 89.9 0.16 5.6E-06 46.6 3.0 25 267-291 26-50 (211)
447 1iy2_A ATP-dependent metallopr 89.8 0.14 4.7E-06 49.2 2.5 23 268-290 75-97 (278)
448 2obl_A ESCN; ATPase, hydrolase 89.7 0.14 4.8E-06 51.7 2.6 23 268-290 73-95 (347)
449 1wcv_1 SOJ, segregation protei 89.7 1.1 3.8E-05 42.2 8.8 66 342-418 110-182 (257)
450 2cvh_A DNA repair and recombin 89.6 0.15 5.1E-06 46.4 2.5 21 268-288 22-42 (220)
451 1yqt_A RNAse L inhibitor; ATP- 89.6 0.14 4.9E-06 54.6 2.7 23 268-290 49-71 (538)
452 1n0w_A DNA repair protein RAD5 89.5 0.15 5.2E-06 47.1 2.5 22 268-289 26-47 (243)
453 2yl4_A ATP-binding cassette SU 89.4 0.15 5.1E-06 54.9 2.7 23 268-290 372-394 (595)
454 3io5_A Recombination and repai 89.4 1.4 4.6E-05 44.3 9.4 20 269-288 31-50 (333)
455 2h92_A Cytidylate kinase; ross 89.2 0.16 5.5E-06 46.6 2.4 26 266-291 3-28 (219)
456 4eaq_A DTMP kinase, thymidylat 89.2 0.19 6.6E-06 47.3 3.0 26 266-291 26-51 (229)
457 1in4_A RUVB, holliday junction 89.2 0.16 5.5E-06 50.4 2.5 23 268-290 53-75 (334)
458 3b60_A Lipid A export ATP-bind 89.2 0.15 5.1E-06 54.8 2.4 23 268-290 371-393 (582)
459 2grj_A Dephospho-COA kinase; T 89.1 0.18 6.3E-06 46.4 2.7 26 266-291 12-37 (192)
460 3qf4_B Uncharacterized ABC tra 89.1 0.17 5.7E-06 54.7 2.7 24 267-290 382-405 (598)
461 2p65_A Hypothetical protein PF 89.0 0.15 5.2E-06 44.5 2.0 23 266-288 43-65 (187)
462 1lv7_A FTSH; alpha/beta domain 88.9 0.19 6.4E-06 47.4 2.7 24 267-290 46-69 (257)
463 1a7j_A Phosphoribulokinase; tr 88.9 0.17 6E-06 49.5 2.5 26 266-291 5-30 (290)
464 3euj_A Chromosome partition pr 88.9 0.16 5.6E-06 53.6 2.5 23 268-290 31-53 (483)
465 3b5x_A Lipid A export ATP-bind 88.9 0.16 5.6E-06 54.5 2.5 23 268-290 371-393 (582)
466 1ltq_A Polynucleotide kinase; 88.8 0.2 6.7E-06 48.4 2.8 23 267-289 3-25 (301)
467 3bos_A Putative DNA replicatio 88.6 0.21 7.2E-06 45.7 2.7 23 267-289 53-75 (242)
468 1v5w_A DMC1, meiotic recombina 88.6 0.78 2.7E-05 45.8 7.1 22 268-289 124-145 (343)
469 3ozx_A RNAse L inhibitor; ATP 88.5 0.17 5.8E-06 54.1 2.3 23 268-290 27-49 (538)
470 4a82_A Cystic fibrosis transme 88.5 0.15 5.1E-06 54.8 1.9 23 268-290 369-391 (578)
471 2w58_A DNAI, primosome compone 88.5 0.22 7.4E-06 45.1 2.7 23 267-289 55-77 (202)
472 1p5z_B DCK, deoxycytidine kina 88.5 0.18 6.1E-06 48.0 2.2 26 265-290 23-48 (263)
473 2b8t_A Thymidine kinase; deoxy 88.4 0.83 2.8E-05 43.1 6.8 24 267-290 13-36 (223)
474 2dpy_A FLII, flagellum-specifi 88.3 0.2 6.8E-06 52.2 2.6 23 268-290 159-181 (438)
475 3bk7_A ABC transporter ATP-bin 88.1 0.2 6.7E-06 54.4 2.5 23 268-290 119-141 (607)
476 3j16_B RLI1P; ribosome recycli 88.1 0.21 7E-06 54.3 2.7 23 268-290 105-127 (608)
477 3bgw_A DNAB-like replicative h 88.1 0.42 1.4E-05 49.7 4.9 21 269-289 200-220 (444)
478 1f2t_A RAD50 ABC-ATPase; DNA d 88.0 0.22 7.7E-06 43.7 2.4 21 268-288 25-45 (149)
479 3qf4_A ABC transporter, ATP-bi 87.9 0.18 6.1E-06 54.3 2.1 23 268-290 371-393 (587)
480 1yqt_A RNAse L inhibitor; ATP- 87.8 0.23 7.7E-06 53.1 2.7 23 268-290 314-336 (538)
481 1xp8_A RECA protein, recombina 87.5 0.5 1.7E-05 48.0 5.0 22 268-289 76-97 (366)
482 2ocp_A DGK, deoxyguanosine kin 87.5 0.27 9.2E-06 46.1 2.8 25 266-290 2-26 (241)
483 3bfv_A CAPA1, CAPB2, membrane 87.5 0.7 2.4E-05 44.6 5.8 67 343-418 191-257 (271)
484 3ozx_A RNAse L inhibitor; ATP 87.4 0.23 7.9E-06 53.0 2.5 23 268-290 296-318 (538)
485 3q9l_A Septum site-determining 87.3 0.49 1.7E-05 44.2 4.5 65 343-417 113-185 (260)
486 2cr8_A MDM4 protein; ZF-ranbp 87.3 0.42 1.4E-05 34.6 3.0 32 50-81 11-42 (53)
487 1u94_A RECA protein, recombina 87.3 0.44 1.5E-05 48.2 4.4 22 268-289 65-86 (356)
488 3bk7_A ABC transporter ATP-bin 87.2 0.25 8.6E-06 53.6 2.7 23 268-290 384-406 (607)
489 1svm_A Large T antigen; AAA+ f 87.2 0.29 9.7E-06 50.0 2.9 25 267-291 170-194 (377)
490 2c6a_A Ubiquitin-protein ligas 87.1 0.29 9.8E-06 34.8 2.0 31 49-79 12-42 (46)
491 1nlf_A Regulatory protein REPA 87.0 0.26 8.8E-06 47.4 2.4 22 268-289 32-53 (279)
492 4f4c_A Multidrug resistance pr 87.0 0.24 8.4E-06 58.4 2.6 24 267-290 1106-1129(1321)
493 1njg_A DNA polymerase III subu 87.0 0.27 9.2E-06 44.3 2.4 22 268-289 47-68 (250)
494 3qf7_A RAD50; ABC-ATPase, ATPa 86.9 0.26 8.8E-06 49.9 2.4 21 269-289 26-46 (365)
495 3cio_A ETK, tyrosine-protein k 86.7 1.2 4E-05 43.6 7.0 66 344-418 214-279 (299)
496 3h4m_A Proteasome-activating n 86.4 0.36 1.2E-05 46.0 3.0 24 267-290 52-75 (285)
497 2chg_A Replication factor C sm 86.3 0.31 1.1E-05 43.5 2.4 21 268-288 40-60 (226)
498 3gmt_A Adenylate kinase; ssgci 86.3 0.35 1.2E-05 46.1 2.8 26 266-291 8-33 (230)
499 2qz4_A Paraplegin; AAA+, SPG7, 86.3 0.36 1.2E-05 45.1 2.9 25 266-290 39-63 (262)
500 1sxj_A Activator 1 95 kDa subu 86.2 1.8 6E-05 45.6 8.5 24 267-290 78-101 (516)
No 1
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-29 Score=275.11 Aligned_cols=202 Identities=45% Similarity=0.797 Sum_probs=123.7
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+..++|+|+|++|+|||||+++|++..+.+....+..+...+...++++|.+++.++....++.+|+|++.....+..
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 34567899999999999999999999999999888888888888888999999999999999999999999999988988
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||||+..+.++.++. ...++++++.++..+++|++|||+||||++.+.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~-~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~ 331 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFL-ENGQTREHAYLLRALGISEIVVSVNKLDLMSWS 331 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSC-SCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccc-cchHHHHHHHHHHHcCCCeEEEEEecccccccc
Confidence 8899999999999999999999999999999999999875544432 157889999999999998899999999999766
Q ss_pred hhhHHHHHHHHHHHH-HhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFL-RSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l-~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.++++.+...+..++ +.+++....++|||+||++|.||.++..
T Consensus 332 ~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~ 375 (592)
T 3mca_A 332 EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDS 375 (592)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCC
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccc
Confidence 788888999999998 8888876678999999999999997654
No 2
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.95 E-value=6.2e-28 Score=253.88 Aligned_cols=201 Identities=43% Similarity=0.802 Sum_probs=180.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+|+|++|+|||||+++|++..+.+....+.+++.++...+++++.+++.++....++.+|+|++.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 45678999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--C
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--Y 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~--~ 420 (471)
+..++|||||||++|...+..++..+|++|||||+..+.++.++.. ..++++++.++..+++|++|||+||||+.. +
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 9999999999999999999999999999999999999866555542 368899999999999988999999999953 3
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCC-CccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDA-SLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~-~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++++.+.+..+++.+++... .++|+|+||++|+||.+++.
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 456788889999999999888643 57899999999999999754
No 3
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.95 E-value=8.2e-28 Score=255.63 Aligned_cols=201 Identities=41% Similarity=0.784 Sum_probs=155.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+|+|++|+|||||+++|++..+.+..+.+.++...+...+++.+.+++.++....++.+|+|++.....+...
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 34578999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||++|...+..++..+|++|||||+..+.++.++. +..++++++.++..++++++|||+||+|+..+..
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~-~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CC-CCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccc-hhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 999999999999999999999999999999999999886655543 4578999999999999888999999999997767
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++++.+.+..++..+++....++|||+||++|+||.+++.
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 888999999999999999876678999999999999998754
No 4
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-27 Score=257.94 Aligned_cols=202 Identities=41% Similarity=0.780 Sum_probs=181.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+|+|++|+|||||+++|++..+.+....+..+...+...+++++.+++.++....++.+|+|++.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 45678999999999999999999999988888888888888888899999999999999999999999999888888889
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||++|...+..+++.+|++|||||++.+.++.++. +..++.+++.++..++++++|||+||+|+..+..
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~-~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFD-LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCC-TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccch-hhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 999999999999999999999999999999999999764444443 3478899999999999988999999999997767
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.+++++...+..++..+++....++|||+||++|.||.++...
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~ 365 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT 365 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTS
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCcc
Confidence 7888899999999999998766789999999999999987543
No 5
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.94 E-value=1.2e-26 Score=245.46 Aligned_cols=200 Identities=46% Similarity=0.844 Sum_probs=172.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+|+|++|+|||||+++|++..+.+..+.+..++..+...+++++.+++.++....++..|+|++.....+...+
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 45689999999999999999999988777777777778888888899999999999999999999999988888888889
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||++|...+..++..+|++|||||+..+.++.+|.. ..++++++.++...++|++|||+||+|+..++.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~-~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~ 163 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISK-DGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES 163 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCT-TSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCc-chhHHHHHHHHHHcCCCeEEEEEEccccccCCHH
Confidence 999999999999999999999999999999999997632222221 2378888888888898889999999999865667
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+++.+.+++..+++.+++....++|+|+||++|+||.++..
T Consensus 164 ~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~ 204 (458)
T 1f60_A 164 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATT 204 (458)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCS
T ss_pred HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccc
Confidence 78888899999998888755457899999999999998754
No 6
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.93 E-value=3.1e-26 Score=240.45 Aligned_cols=201 Identities=45% Similarity=0.745 Sum_probs=163.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+++|++|+|||||+++|++..+.+....+..+.......+++.+.+++.++....++.+|+|++.....++..+
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999988777777666667777777888888899999999999999999998888888899
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--CC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~--~~ 421 (471)
..++|||||||++|...+..+++.+|++|||+|+..+.++. ...+..++++++.++..++++++|||+||+|+.. +.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~-~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA-GMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHH-HHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCcccc-ccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999863322 2224568899999999999877999999999986 34
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++++.+.+++..+++.+++....++|+|+||++|+||.+++..
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~ 206 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSEN 206 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccc
Confidence 56778889999999999888665689999999999999988653
No 7
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.93 E-value=3.3e-26 Score=242.53 Aligned_cols=200 Identities=44% Similarity=0.781 Sum_probs=134.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+++|++++|||||+++|++..+.+....+.++..+....++.++.+++.++....++..|+|++.....+...+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45689999999999999999999988777776666666666666777778888899999999999999998887888889
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC--CC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ--YS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~--~~ 421 (471)
..++|||||||++|...+..++..+|++|||||+..+.++.+|.. ..++++++.++...++|++|||+||+|+.. ++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 999999999999999999999999999999999998854444432 357888999888899988999999999954 34
Q ss_pred hhhHHHHHHHHHHHHHhc-CCC-CCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSC-GFK-DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~-g~~-~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.++++.+..++..+++.. ++. ...++|||+||++|.||.+++.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 677888888999998887 774 1247899999999999999874
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=2.7e-25 Score=233.11 Aligned_cols=194 Identities=34% Similarity=0.586 Sum_probs=147.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCC--CccchhccccccccccccceEEEEEEEEecC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK--GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~--~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
+..++|+|+|++|+|||||+++|++..+.+....+..+.......+. ..+.+.+.++....++.+|+|++.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34689999999999999999999987765554433333322222222 3456677889999999999999988888888
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||+|+..+ ...++++++.++..++++++|||+||+|+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 999999999999999999999999999999999999987 456788888888888988899999999998765
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++++.+.+.+..+++.+++....++++++||++|+||.+++..
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 66777788888888888874334578999999999999997654
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.89 E-value=1.2e-22 Score=210.60 Aligned_cols=170 Identities=36% Similarity=0.551 Sum_probs=139.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+++|++++|||||+++|++... ..+...+...+.++....++..|+|+......+...+.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 66 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAAR 66 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSC
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCe
Confidence 457899999999999999999985321 11112222223466777888999999988888888889
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.++|||||||++|...+..++..+|++|||+|+..+ ...++++++.++...++|++|||+||+|+.. ..+.
T Consensus 67 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~ 137 (397)
T 1d2e_A 67 HYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEM 137 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHH
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHH
Confidence 999999999999999999999999999999999987 4568888888888889887889999999985 3455
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g 458 (471)
++.+.+++..+++.+++....++|+++||++|.|
T Consensus 138 ~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 138 VELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 6777788888998888765568999999999886
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=2.4e-22 Score=208.79 Aligned_cols=174 Identities=33% Similarity=0.517 Sum_probs=140.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCC-CccchhccccccccccccceEEEEEEEEecC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGK-GSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~-~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
.+..++|+++|++|+|||||+++|++.... .+. ..+.....++....++..|+|+......+..
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~---------------~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAA---------------ENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHH---------------SCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhh---------------cCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 456789999999999999999999853110 111 1111122466677788899999888888888
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||+|+..+ ...++++++.++...++|++|+|+||+|+.. .
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~ 143 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVD-D 143 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-C
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEECccccC-c
Confidence 889999999999999999999999999999999999987 3467888888888889887899999999985 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
.+.++.+.+++..+++.+++....++|+++||++|.|+.
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~ 182 (405)
T 2c78_A 144 PELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQM 182 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhh
Confidence 455667777888888888876556899999999999843
No 11
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=4.7e-22 Score=211.49 Aligned_cols=165 Identities=31% Similarity=0.519 Sum_probs=125.2
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..++.++|+++|++++|||||+++|++... ...++....++.+|+|++.....+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~------------------------~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIAS------------------------TSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCc------------------------ccccccccccccCccEEecceEEEEE
Confidence 346789999999999999999999985320 11345566777889998877777777
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||+|+..+ ...++.+++.++..+++| +|+|+||+|+. .
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~ip-~IvviNK~Dl~--~ 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG--------PKTQTGEHMLILDHFNIP-IIVVITKSDNA--G 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-BCEEEECTTSS--C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCcc--c
Confidence 889999999999999999999999999999999999987 467889999999999998 69999999998 3
Q ss_pred hhhHHHHHHHHHHHHHhc-CCCCCCccEEEEecccCCCccccC
Q 012085 422 KDRFDSIKVQLGTFLRSC-GFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~-g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
.+.++.+.+++..++... ++. .++|+++||++|+||.+++
T Consensus 140 ~~~~~~~~~~l~~~l~~~~~~~--~~~ii~vSA~~g~gI~~L~ 180 (482)
T 1wb1_A 140 TEEIKRTEMIMKSILQSTHNLK--NSSIIPISAKTGFGVDELK 180 (482)
T ss_dssp HHHHHHHHHHHHHHHHHSSSGG--GCCEEECCTTTCTTHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcccc--cceEEEEECcCCCCHHHHH
Confidence 556777888888888776 553 4689999999999998754
No 12
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=1.3e-21 Score=203.50 Aligned_cols=162 Identities=33% Similarity=0.475 Sum_probs=121.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (471)
++..++|+++|++++|||||+++|++.. .+....++.+|+|+......+..
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~----------------------------~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVW----------------------------TDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCC----------------------------CC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCc----------------------------cccChhhhcCCcEEEEeeeeeecc
Confidence 3556899999999999999999998521 12334455566666443322111
Q ss_pred --------------C--------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHH
Q 012085 342 --------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL 399 (471)
Q Consensus 342 --------------~--------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l 399 (471)
. ...+.|||||||++|...+..++..+|++|||||+..+. ...++.+++.+
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~ 131 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMA 131 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHH
Confidence 0 268999999999999999999999999999999999762 15788899888
Q ss_pred HHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 400 IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 400 l~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+..++++|+|||+||+|+... ....+..+.+..+++.... ..++||++||++|+||.+++
T Consensus 132 ~~~~~~~~iivviNK~Dl~~~--~~~~~~~~~i~~~l~~~~~--~~~~~i~vSA~~g~gi~~L~ 191 (410)
T 1kk1_A 132 LQIIGQKNIIIAQNKIELVDK--EKALENYRQIKEFIEGTVA--ENAPIIPISALHGANIDVLV 191 (410)
T ss_dssp HHHHTCCCEEEEEECGGGSCH--HHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHHHH
T ss_pred HHHcCCCcEEEEEECccCCCH--HHHHHHHHHHHHHHHhcCc--CCCeEEEeeCCCCCCHHHHH
Confidence 888888779999999999843 3333445566666654322 35789999999999998754
No 13
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=2e-21 Score=202.07 Aligned_cols=163 Identities=31% Similarity=0.469 Sum_probs=110.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS- 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~- 341 (471)
++..++|+++|++++|||||+++|++.. .+....++.+|+|+...+..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~----------------------------~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVW----------------------------TDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCC----------------------------CCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCc----------------------------cccCcccccCCcEEEecccccccc
Confidence 3457899999999999999999998421 12233445566665443221111
Q ss_pred --------------C--------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHH
Q 012085 342 --------------K--------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQL 399 (471)
Q Consensus 342 --------------~--------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~l 399 (471)
. ...+.|||||||++|...+..++..+|++|||+|++.+. ...++.+++.+
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~ 129 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC-------PQPQTKEHLMA 129 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS-------SCHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC-------CCchhHHHHHH
Confidence 1 268999999999999999999999999999999999762 15688888888
Q ss_pred HHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 400 IRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 400 l~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+..++++|+|||+||+|+..... ..+..+++..+++... ...++||++||++|+||.+++.
T Consensus 130 ~~~l~~~~iivv~NK~Dl~~~~~--~~~~~~~i~~~l~~~~--~~~~~~i~vSA~~g~gi~~L~~ 190 (408)
T 1s0u_A 130 LEILGIDKIIIVQNKIDLVDEKQ--AEENYEQIKEFVKGTI--AENAPIIPISAHHEANIDVLLK 190 (408)
T ss_dssp HHHTTCCCEEEEEECTTSSCTTT--TTTHHHHHHHHHTTST--TTTCCEEEC------CHHHHHH
T ss_pred HHHcCCCeEEEEEEccCCCCHHH--HHHHHHHHHHHHhhcC--CCCCeEEEeeCCCCCCHHHHHH
Confidence 88888877999999999985432 1223344455554432 2357899999999999987643
No 14
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=3.7e-21 Score=219.59 Aligned_cols=172 Identities=34% Similarity=0.504 Sum_probs=126.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+..++|+|+|++++|||||+++|++... ..+...+...+.++....+++.|+|+......+..
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456679999999999999999999985321 01111111112456677888999999887777888
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..++|||||||++|...+..++..+|++|||||+..+ ...++++++.++...++|++|||+||+|+.. .
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d 427 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVD-D 427 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-C
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHHcCCCeEEEEEeeccccc-c
Confidence 889999999999999999999999999999999999987 3467888888888889987899999999985 3
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ 457 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~ 457 (471)
.+.++.+.+++..+++.+++....++|+++||++|.
T Consensus 428 ~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 428 EELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTT
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEEEEEeccCC
Confidence 455677788888999888876567899999999993
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=176.29 Aligned_cols=172 Identities=16% Similarity=0.166 Sum_probs=105.0
Q ss_pred CCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccc
Q 012085 248 QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327 (471)
Q Consensus 248 ~~~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~ 327 (471)
+..|+.|++...+....+.++|+|+|.+|+|||||+++|++..... .....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-----------------------------~~~~t 58 (201)
T 2ew1_A 8 HHHSSGLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-----------------------------GQGAT 58 (201)
T ss_dssp --------------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCT-----------------------------TCCCC
T ss_pred ccccccccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCC-----------------------------CCCCc
Confidence 4567888888887777788999999999999999999998521100 01111
Q ss_pred cceEEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CC
Q 012085 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GV 405 (471)
Q Consensus 328 ~GiTi~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~v 405 (471)
.+.........+......+.||||||+++|...+..+++.+|++|+|+|++.+.+ +.... .++..+... ..
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s------~~~~~-~~~~~i~~~~~~~ 131 (201)
T 2ew1_A 59 IGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES------FRCLP-EWLREIEQYASNK 131 (201)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH------HHTHH-HHHHHHHHHSCTT
T ss_pred cceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhcCCC
Confidence 2223333333344444689999999999999999999999999999999996522 22222 233333322 22
Q ss_pred CeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 406 p~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.|+|||+||+|+........++ +..+....+ ++++++||++|.||.+++.
T Consensus 132 ~piilv~NK~Dl~~~~~v~~~~----~~~~~~~~~-----~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 132 VITVLVGNKIDLAERREVSQQR----AEEFSEAQD-----MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp CEEEEEEECGGGGGGCSSCHHH----HHHHHHHHT-----CCEEECCTTTCTTHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHH----HHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 3599999999997422211222 223333333 4789999999999998764
No 16
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=2e-20 Score=178.74 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=105.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.+||+|+|.+|||||||+++|+...- .....++.|..+......+...
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f-----------------------------~~~~~~Tig~d~~~k~~~~~~~ 60 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSF-----------------------------DNTYQATIGIDFLSKTMYLEDR 60 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCC-----------------------------C----------CEEEEEECSSC
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCC-----------------------------CCCcCCccceEEEEEEEEecce
Confidence 34668999999999999999999984210 0011112222223333445556
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC-CCeEEEEEeCCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-vp~IIVVvNKiDl~~~~ 421 (471)
...+.||||+|+++|...+..+++.++++|+|+|.+...+ +.....++..+....+ ..|+|||+||+|+....
T Consensus 61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S------f~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r 134 (216)
T 4dkx_A 61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS------FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 134 (216)
T ss_dssp EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC
T ss_pred EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH------HHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC
Confidence 6789999999999999999999999999999999996632 3334444443333322 23599999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
....+ +...+.+.++ +.|+++||++|.||.++|..
T Consensus 135 ~V~~~----e~~~~a~~~~-----~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 135 QVSIE----EGERKAKELN-----VMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp CSCHH----HHHHHHHHHT-----CEEEEEBTTTTBSHHHHHHH
T ss_pred cccHH----HHhhHHHHhC-----CeeEEEeCCCCcCHHHHHHH
Confidence 22222 3334444444 47899999999999998754
No 17
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=172.82 Aligned_cols=161 Identities=19% Similarity=0.152 Sum_probs=106.1
Q ss_pred cCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe
Q 012085 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (471)
Q Consensus 260 ~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~ 339 (471)
.....+.++|+|+|.+|+|||||+++|++....... ...+.+ .....+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------------------------~~~t~~----~~~~~~ 62 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN----------------------------ILPTIG----FSIEKF 62 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSS----------------------------CCCCSS----EEEEEE
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC----------------------------cCCccc----eeEEEE
Confidence 334566799999999999999999999853210000 011122 222234
Q ss_pred cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeC
Q 012085 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNK 414 (471)
Q Consensus 340 ~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNK 414 (471)
...+..+.||||||++.+...+..+++.+|++|||+|++.+ ..+.....++..++.. .+.| +|||+||
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 135 (190)
T 2h57_A 63 KSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR------LRMVVAKEELDTLLNHPDIKHRRIP-ILFFANK 135 (190)
T ss_dssp ECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH------HHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEEC
T ss_pred EECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH------HHHHHHHHHHHHHHhChhhccCCCe-EEEEEeC
Confidence 45578999999999999999999999999999999999865 2233344444555544 3445 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+|+... ...+++.+ .+....+....++++++||++|.||.+++..
T Consensus 136 ~Dl~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 180 (190)
T 2h57_A 136 MDLRDA--VTSVKVSQ----LLCLENIKDKPWHICASDAIKGEGLQEGVDW 180 (190)
T ss_dssp TTSTTC--CCHHHHHH----HHTGGGCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred cCcccC--CCHHHHHH----HhChhhccCCceEEEEccCCCCcCHHHHHHH
Confidence 999743 22233333 2221222223568999999999999987643
No 18
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=8.4e-21 Score=197.08 Aligned_cols=176 Identities=27% Similarity=0.322 Sum_probs=119.5
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe--
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF-- 339 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~-- 339 (471)
..+..++|+++|++|+|||||+++|++........ +...............+.+.......+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLG----------------YAETNIGVCESCKKPEAYVTEPSCKSCGS 67 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSE----------------EEEEEEEECTTSCTTTTEESSSCCGGGTC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccC----------------ccccceeeccccccccceecccccccccc
Confidence 34567899999999999999999999632211000 000000000000001111110000000
Q ss_pred ---cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 340 ---DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 340 ---~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
......+.|||||||++|...+..++..+|++|||+|+..+. ...++.+++.++..++.+|+|+|+||+|
T Consensus 68 ~~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~-------~~~qt~~~~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 68 DDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPF-------PQPQTREHFVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp CSCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS-------SCHHHHHHHHHHHHHTCCCEEEEEECGG
T ss_pred cccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC-------CcHHHHHHHHHHHHcCCCCEEEEEECcc
Confidence 112268999999999999999999999999999999999872 1468889999999888877999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+.. .+...+..+.+..++...+. ..++|+++||++|+||.+++.
T Consensus 141 l~~--~~~~~~~~~~i~~~l~~~~~--~~~~ii~vSA~~g~gi~~L~~ 184 (403)
T 3sjy_A 141 VVS--KEEALSQYRQIKQFTKGTWA--ENVPIIPVSALHKINIDSLIE 184 (403)
T ss_dssp GSC--HHHHHHHHHHHHHHHTTSTT--TTCCEEECBTTTTBSHHHHHH
T ss_pred ccc--hHHHHHHHHHHHHHHHhhCC--CCCEEEEEECCCCcChHHHHH
Confidence 984 34455566677777655543 457899999999999987653
No 19
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=172.38 Aligned_cols=170 Identities=15% Similarity=0.167 Sum_probs=109.1
Q ss_pred CcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccc
Q 012085 250 KPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERG 329 (471)
Q Consensus 250 ~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~G 329 (471)
.++.++......+..+.++|+|+|.+|+|||||+++|++...... .....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~ 59 (193)
T 2oil_A 9 HHSSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIG 59 (193)
T ss_dssp -----------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSS
T ss_pred ccccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccc
Confidence 455566666666677789999999999999999999995321110 111234
Q ss_pred eEEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCe
Q 012085 330 ITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQ 407 (471)
Q Consensus 330 iTi~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~ 407 (471)
.+.......+......+.||||||++++...+..+++.+|++|+|+|++.+.+ +... ..++..+... ...|
T Consensus 60 ~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s------~~~~-~~~l~~i~~~~~~~~p 132 (193)
T 2oil_A 60 VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT------YAVV-ERWLKELYDHAEATIV 132 (193)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH------HHTH-HHHHHHHHTTSCTTCE
T ss_pred eeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhcCCCCe
Confidence 44444444455566789999999999999999999999999999999986521 2222 2333333332 1235
Q ss_pred EEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 408 IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|||+||+|+........+ .+..++...+ ++++++||++|.||.+++.
T Consensus 133 iilv~nK~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 133 VMLVGNKSDLSQAREVPTE----EARMFAENNG-----LLFLETSALDSTNVELAFE 180 (193)
T ss_dssp EEEEEECGGGGGGCCSCHH----HHHHHHHHTT-----CEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECCCcccccccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 9999999999743222222 2333443433 4789999999999998764
No 20
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.9e-21 Score=175.49 Aligned_cols=154 Identities=27% Similarity=0.343 Sum_probs=103.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++....... .++++.+.....+...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE-------------------------------AGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS-------------------------------CCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC-------------------------------CCceeEeeeEEEEEeCC
Confidence 35678999999999999999999853221100 01111111111233456
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++.+...+..++..+|++|+|+|++.+. .....+.+..+...++| +++|+||+|+.....+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--------~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGV--------MPQTVEAINHAKAANVP-IIVAINKMDKPEANPD 125 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC--------CHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC--------cHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHH
Confidence 78999999999999999889999999999999998762 23334445555556666 9999999999854222
Q ss_pred hHHHHHHHHHHHHHhcCCCC----CCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~----~~i~IIpvSAktG~gI~e~~~ 464 (471)
++...+ ...+... ..++++++||++|.||.+++.
T Consensus 126 ---~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 126 ---RVMQEL----MEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp ---HHHHHH----TTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred ---HHHHHH----HhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence 222222 2211111 125899999999999998764
No 21
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.83 E-value=2.1e-20 Score=166.26 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=101.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++..... ......+... .....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVE-----------------------------KYDPTIEDSY-RKQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------SCCCCSEEEE-EEEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccceE-EEEEEECCEEE
Confidence 46899999999999999999998521100 0001111111 12233445567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|++... . +.....++..+... .+.| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS---T---FNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH---H---HHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 8999999999999999989999999999999999652 1 22222232223222 2455 99999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ .+..+.+.+ ..++++++||++|.||.+++.
T Consensus 125 ~~~~~----~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 125 VVGKE----QGQNLARQW----CNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp CSCHH----HHHHHHHHT----TSCEEEECBTTTTBSHHHHHH
T ss_pred cCCHH----HHHHHHHHc----cCCcEEEecCCCCCCHHHHHH
Confidence 21122 233333333 135899999999999998764
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=167.26 Aligned_cols=157 Identities=17% Similarity=0.137 Sum_probs=104.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 57 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSG-----------------------------SYITTIGVDFKIRTVEINGEK 57 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC--------------------------------CCTTTBSEEEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------ccCCCceeEEEEEEEEECCEE
Confidence 456899999999999999999998522110 001112233333333333344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..+.......|+|||+||+|+......
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 131 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAE------SFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV 131 (181)
T ss_dssp EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHH------HHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS
T ss_pred EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc
Confidence 78999999999999999999999999999999999752 232333333333333333459999999998743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ ....+....+ ++++++||++|.||.+++.
T Consensus 132 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 132 ETE----DAYKFAGQMG-----IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp CHH----HHHHHHHHHT-----CCEEECBTTTTBSHHHHHH
T ss_pred CHH----HHHHHHHHcC-----CeEEEEECCCCCCHHHHHH
Confidence 222 2233333334 4789999999999998764
No 23
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=5.1e-20 Score=168.26 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=74.2
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++.+...+..+++.+|++|||+|++.+.+ +.....++..+....+ .|+|+|+||+|+ .....
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s------~~~~~~~~~~i~~~~~-~piilv~NK~D~-~~~~~ 164 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT------LDRAKTWVNQLKISSN-YIIILVANKIDK-NKFQV 164 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH------HHHHHHHHHHHHHHSC-CEEEEEEECTTC-C-CCS
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHhhCC-CcEEEEEECCCc-ccccC
Confidence 789999999999999999999999999999999997622 2223333333333345 459999999993 22222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ .+..++...+ ++++++||++|.||.+++.
T Consensus 165 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 165 DIL----EVQKYAQDNN-----LLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp CHH----HHHHHHHHTT-----CEEEEECTTTCTTHHHHHH
T ss_pred CHH----HHHHHHHHcC-----CcEEEEecCCCCCHHHHHH
Confidence 223 3344444443 4889999999999998764
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=3.1e-20 Score=167.50 Aligned_cols=160 Identities=14% Similarity=0.069 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-C
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-K 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~ 342 (471)
++.++|+|+|.+|+|||||+++|++..... ......+.........+.. .
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 54 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGK-----------------------------QYKQTIGLDFFLRRITLPGNL 54 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTH-----------------------------HHHHTTTSSEEEEEEEETTTE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCC-----------------------------CCCCceeEEEEEEEEEeCCCC
Confidence 456899999999999999999999532100 0001122222222222322 2
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEEEEeCCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIVVvNKiDl~~~~ 421 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+.+ +..+.....++...... .+.|++|+|+||+|+....
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~ 131 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR 131 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc
Confidence 3789999999999999999999999999999999997622 22221111222221111 2556689999999997422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ .+..+....+ ++++++||++|.||.+++.
T Consensus 132 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 132 TIKPE----KHLRFCQENG-----FSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp SSCHH----HHHHHHHHHT-----CEEEEECTTTCTTHHHHHH
T ss_pred ccCHH----HHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Confidence 11122 2233333334 4789999999999998764
No 25
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.83 E-value=4.3e-20 Score=165.20 Aligned_cols=153 Identities=23% Similarity=0.186 Sum_probs=104.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++.... ....+.+.+ ...+.....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~------------------------------~~~~t~~~~----~~~~~~~~~ 51 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV------------------------------TTIPTIGFN----VETVTYKNL 51 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC------------------------------CCCCCSSEE----EEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC------------------------------CcCCcCccc----eEEEEECCE
Confidence 4689999999999999999999842110 001112222 222334578
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..++.. .+. |+++|+||+|+....
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 52 KFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD------RIGISKSELVAMLEEEELRKA-ILVVFANKQDMEQAM 124 (171)
T ss_dssp EEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT------THHHHHHHHHHHHTCGGGTTC-EEEEEEECTTSTTCC
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhCCC-EEEEEEECCCCcCCC
Confidence 9999999999999999999999999999999999762 233344444455443 244 599999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+++...+... ......++++++||++|.||.+++.
T Consensus 125 --~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 125 --TSSEMANSLGLP----ALKDRKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp --CHHHHHHHHTGG----GCTTSCEEEEECCTTTCTTHHHHHH
T ss_pred --CHHHHHHHhCch----hccCCceEEEECcCCCCcCHHHHHH
Confidence 223333333211 1222456899999999999998764
No 26
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=4e-20 Score=169.98 Aligned_cols=160 Identities=20% Similarity=0.176 Sum_probs=105.9
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
......++|+|+|.+|||||||+++|++...... ....+.+.+ ...+.
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~----------------------------~~~~t~~~~----~~~~~ 59 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK----------------------------HITATVGYN----VETFE 59 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC--------------------------------CCCCCSSEE----EEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc----------------------------cccccccee----EEEEE
Confidence 3456678999999999999999999985321110 001122222 22345
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----------cCCCeEEE
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----------FGVDQLIV 410 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----------~~vp~IIV 410 (471)
.....+.||||||++.+...+..+++.+|++|||+|++.+.+ +.....++..++.. .++| +||
T Consensus 60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iil 132 (199)
T 4bas_A 60 KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR------LCVVKSEIQAMLKHEDIRRELPGGGRVP-FLF 132 (199)
T ss_dssp ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG------HHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEE
T ss_pred eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH------HHHHHHHHHHHHhChhhhhcccccCCCC-EEE
Confidence 678899999999999999999999999999999999997622 33333444444332 1555 999
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+||+|+... ...+++...+...... ....++|+++||++|.||.+++.
T Consensus 133 v~NK~Dl~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 133 FANKMDAAGA--KTAAELVEILDLTTLM---GDHPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EEECTTSTTC--CCHHHHHHHHTHHHHH---TTSCEEEEECBTTTTBTHHHHHH
T ss_pred EEECcCCCCC--CCHHHHHHHhcchhhc---cCCeeEEEEeeCCCccCHHHHHH
Confidence 9999999853 2233333333311100 11346899999999999998764
No 27
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.83 E-value=2.1e-20 Score=165.66 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=101.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|++|+|||||+++|++...... .....+. .......+.....
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~-~~~~~~~~~~~~~ 51 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEK-----------------------------YDPTIED-FYRKEIEVDSSPS 51 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSC-----------------------------CCTTCCE-EEEEEEEETTEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCccc-----------------------------CCCCcce-eEEEEEEECCEEE
Confidence 468999999999999999999985321100 0011111 1122233444456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|+..+. . +.....+...++.. .+.| +++|+||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ---S---FQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESER 124 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGC
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccc
Confidence 7999999999999999889999999999999999652 1 22233333333332 3455 99999999986422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ ....+....+ ++++++||++|.||.+++.
T Consensus 125 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 125 EVSSS----EGRALAEEWG-----CPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp CSCHH----HHHHHHHHHT-----SCEEEECTTCHHHHHHHHH
T ss_pred cCCHH----HHHHHHHHhC-----CCEEEecCCCCcCHHHHHH
Confidence 21112 2233333334 4789999999999998764
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.82 E-value=3.4e-20 Score=164.43 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=99.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|+|||||+++|++...... .....+... .....+....
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~ 51 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-----------------------------YEPTKADSY-RKKVVLDGEE 51 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSC-----------------------------CCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCC-----------------------------CCCCcceEE-EEEEEECCEE
Confidence 3568999999999999999999995321000 001111111 1122344445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++++...+..+++.+|++|+|+|++... .+.....++..+.... +.| +++|+||+|+...
T Consensus 52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1u8z_A 52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME------SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 124 (168)
T ss_dssp EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccccc
Confidence 68999999999999999999999999999999999652 1222223323333322 445 9999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....++ +..++...+ ++++++||++|.||.+++.
T Consensus 125 ~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 125 RQVSVEE----AKNRADQWN-----VNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp CCSCHHH----HHHHHHHHT-----CEEEECCTTTCTTHHHHHH
T ss_pred CccCHHH----HHHHHHHcC-----CeEEEeCCCCCCCHHHHHH
Confidence 2222222 333333333 4789999999999998764
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.82 E-value=2.8e-20 Score=168.80 Aligned_cols=158 Identities=16% Similarity=0.157 Sum_probs=103.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ......+.+. .....+....
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 53 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVD-----------------------------SYDPTIENTF-TKLITVNGQE 53 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCS-----------------------------CCCTTCCEEE-EEEEEETTEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccccE-EEEEEECCEE
Confidence 457899999999999999999998422100 0111223333 2233344445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++.+...+..+++.+|++|+|+|++... .+..+.....++...+...++| +|||+||+|+......
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~ 129 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK---SFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMERVI 129 (181)
T ss_dssp EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH---HHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTCCS
T ss_pred EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhccee
Confidence 77899999999999888888999999999999999652 2222222222222222223455 9999999999643322
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +.+..+....+ ++++++||++|.||.+++.
T Consensus 130 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 130 SY----EEGKALAESWN-----AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp CH----HHHHHHHHHTT-----CEEEECCTTSHHHHHHHHH
T ss_pred cH----HHHHHHHHHhC-----CcEEEEecCCCCCHHHHHH
Confidence 22 23334444444 4789999999999998764
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=6.1e-20 Score=163.44 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=106.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHE-----------------------------FQESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 456899999999999999999998521110 111234444444445555557
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~ 422 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..+.... ...|+++|+||+|+.....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~ 128 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEE------SFARAKNWVKELQRQASPNIVIALSGNKADLANKRA 128 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHH------HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc
Confidence 78999999999999999999999999999999998652 1222333333333322 1235899999999964322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+ .+..++...+ ++++++||++|.||.+++..
T Consensus 129 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 129 VDFQ----EAQSYADDNS-----LLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp SCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHHHHHH
T ss_pred cCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHHHH
Confidence 2222 2333333333 57899999999999987643
No 31
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.82 E-value=5.2e-20 Score=169.44 Aligned_cols=169 Identities=18% Similarity=0.121 Sum_probs=109.5
Q ss_pred cccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccce
Q 012085 251 PEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGI 330 (471)
Q Consensus 251 ~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~Gi 330 (471)
|+.|............++|+|+|.+|+|||||+++|++...... .....+.
T Consensus 6 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~ 56 (191)
T 2a5j_A 6 HHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGV 56 (191)
T ss_dssp ----CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC----------------------------------CCS
T ss_pred cccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCcccc
Confidence 44455555566667789999999999999999999985321110 0111233
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeE
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQL 408 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~I 408 (471)
+.......+......+.||||||++.+...+..+++.+|++|||+|++...+ +..... ++..+... ...|+
T Consensus 57 ~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~~-~l~~i~~~~~~~~pi 129 (191)
T 2a5j_A 57 EFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLTS-WLEDARQHSSSNMVI 129 (191)
T ss_dssp SEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH------HHTHHH-HHHHHHHHSCTTCEE
T ss_pred eeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH------HHHHHH-HHHHHHHhcCCCCCE
Confidence 3333333444445789999999999999888899999999999999986521 222222 33333332 12359
Q ss_pred EEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 409 IVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|||+||+|+........ +.+..+....+ ++++++||++|.||.+++.
T Consensus 130 ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 130 MLIGNKSDLESRRDVKR----EEGEAFAREHG-----LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp EEEEECTTCGGGCCSCH----HHHHHHHHHHT-----CEEEEECTTTCTTHHHHHH
T ss_pred EEEEECcccCCccccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 99999999964222112 22333333444 4789999999999998764
No 32
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.82 E-value=2.3e-20 Score=192.22 Aligned_cols=143 Identities=20% Similarity=0.279 Sum_probs=121.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
+|+++|++++|||||+++|+ .+|+|++.....+...+..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 89999999999999999997 256777777777888889999
Q ss_pred EEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe-CCCCCCCChhhHH
Q 012085 348 VLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN-KMDAVQYSKDRFD 426 (471)
Q Consensus 348 LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN-KiDl~~~~~e~~e 426 (471)
|||||||++|...+..+++.+|++||||| ..+ ...++++++.++..+++|.+|+|+| |+|+ . .+.++
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~ 131 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQG--------LDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAID 131 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHH
Confidence 99999999999999999999999999999 766 4678899999999999985589999 9999 3 34456
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEE--Eeccc---CCCccccC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIP--LSALE---NQNLVTAP 463 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIp--vSAkt---G~gI~e~~ 463 (471)
++.+++..+++..++ ..++|++ +||++ |+||.+++
T Consensus 132 ~~~~~i~~~l~~~~~--~~~~ii~~~~SA~~~~~g~gi~~L~ 171 (370)
T 2elf_A 132 ELKAKLKVITSGTVL--QDWECISLNTNKSAKNPFEGVDELK 171 (370)
T ss_dssp HHHHHHHHHTTTSTT--TTCEEEECCCCTTSSSTTTTHHHHH
T ss_pred HHHHHHHHHHHhcCC--CceEEEecccccccCcCCCCHHHHH
Confidence 667778888766654 3478999 99999 99998764
No 33
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.82 E-value=4.1e-20 Score=165.93 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=95.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++..... .....|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEEE
Confidence 46899999999999999999998532111 011233343333344444456
Q ss_pred EEEEEeCCCCCC--chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCCCC
Q 012085 345 HVVVLDSPGHKD--FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDAV 418 (471)
Q Consensus 345 ~l~LIDTPG~e~--f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiDl~ 418 (471)
.+.||||||++. +......+++.+|++|+|+|++... .+..... ++..+... ++| +|+|+||+|+.
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~-~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRG------SFESASE-LRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHH------HHHHHHH-HHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHH------HHHHHHH-HHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 899999999887 4555566788899999999999652 2222222 33333332 455 99999999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.......++ ...+....+ ++++++||++|.||.+++.
T Consensus 125 ~~~~v~~~~----~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 125 RCREVSVEE----GRACAVVFD-----CKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TTCCSCHHH----HHHHHHHHT-----SEEEECBTTTTBSHHHHHH
T ss_pred cccccCHHH----HHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Confidence 532222222 222333333 4789999999999998764
No 34
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.82 E-value=1.6e-20 Score=171.40 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=103.9
Q ss_pred ccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEE
Q 012085 254 WMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT 333 (471)
Q Consensus 254 ~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~ 333 (471)
+..........+.++|+|+|.+|+|||||+++|++.... ....+.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~------------------------------~~~~t~~~~~- 57 (181)
T 2h17_A 9 HHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVV------------------------------HTSPTIGSNV- 57 (181)
T ss_dssp ------------CEEEEEEEETTSSHHHHHHHHHTTSCE------------------------------EEECCSSSSC-
T ss_pred cccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCC------------------------------ccCCcCceee-
Confidence 334444455667899999999999999999999953210 0011112111
Q ss_pred EEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEE
Q 012085 334 VAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVA 411 (471)
Q Consensus 334 ~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVV 411 (471)
..+...+..+.||||||++++...+..+++.+|++|||+|++.+. .+.....++..++.. ....|+|||
T Consensus 58 ---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv 128 (181)
T 2h17_A 58 ---EEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAGLLIF 128 (181)
T ss_dssp ---EEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT------THHHHHHHHHHHHTCGGGTTCEEEEE
T ss_pred ---EEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhChhhCCCeEEEE
Confidence 112335689999999999999999999999999999999999762 233444444455443 123359999
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+||+|+... ...+++.+.+ .........++++++||++|.||.+++.
T Consensus 129 ~NK~Dl~~~--~~~~~i~~~~----~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 129 ANKQDVKEC--MTVAEISQFL----KLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp EECTTSTTC--CCHHHHHHHT----TGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred EECCCcccC--CCHHHHHHHh----CcccccCCceEEEEccCCCCcCHHHHHH
Confidence 999999752 1222232222 1112223456899999999999998764
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=9.1e-20 Score=164.85 Aligned_cols=157 Identities=19% Similarity=0.164 Sum_probs=105.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVE-----------------------------FQESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTT-----------------------------TSCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------cCCCCceeEEEEEEEEECCE
Confidence 3456899999999999999999998532110 00112233333333344445
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+.+ +... ..++..+.... ..|++||+||+|+...
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS------FERA-KKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH------HHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 6789999999999999999999999999999999986521 2222 33333333331 2359999999999753
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... +.+..++...+ ++++++||++|.||.+++.
T Consensus 133 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 133 RKVTA----EDAQTYAQENG-----LFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCSSSCTTHHHHHH
T ss_pred ccCCH----HHHHHHHHHcC-----CEEEEEECCCCCCHHHHHH
Confidence 32222 23334444443 4789999999999998764
No 36
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=8.4e-20 Score=162.53 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=105.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++..... ......+.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAE-----------------------------NKEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEEEEEEEECCEEE
Confidence 46789999999999999999998532110 1112234444444444555567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....++..+.... ...|+++|+||+|+......
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 126 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS------FIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGE 126 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH------HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH------HHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccc
Confidence 89999999999999999999999999999999996521 222223333333332 22359999999999743110
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+ +...+....+....+ ++++++||++|.||.+++..
T Consensus 127 ~-~v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 127 R-KVAREEGEKLAEEKG-----LLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp C-CSCHHHHHHHHHHHT-----CEEEECCTTTCTTHHHHHHH
T ss_pred c-CCCHHHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 0 001122233333333 47899999999999987643
No 37
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.82 E-value=4.8e-20 Score=166.07 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=102.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT-----------------------------QLFHTIGVEFLNKDLEVDGHF 55 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC---------------------------------CCSEEEEEEEEEETTEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeeeEEEEEEEECCEE
Confidence 456899999999999999999998532110 111123333333333344444
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +..+.....++...... .+.| +++|+||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDISER 131 (177)
T ss_dssp EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCSSC
T ss_pred EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HHHHHHHHHHHHHHccccccCCCc-EEEEEECCccccc
Confidence 689999999999999999999999999999999997622 22121111222111111 3444 9999999999732
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....++ +..++... ..++++++||++|.||.+++.
T Consensus 132 -~~~~~~----~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 132 -QVSTEE----AQAWCRDN----GDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp -SSCHHH----HHHHHHHT----TCCCEEECCTTTCTTHHHHHH
T ss_pred -ccCHHH----HHHHHHhc----CCceEEEEeCCCCCCHHHHHH
Confidence 222222 23333322 235789999999999998764
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=166.62 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=105.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 64 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-----------------------------SYISTIGVDFKIRTIELDGKT 64 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------CCCCCSSEEEEEEEEEETTEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCcccceEEEEEEEECCEE
Confidence 456899999999999999999998522110 011122333333333444444
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++...+ +... ..++..+... ++ |+|||+||+|+...
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~-p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES------FNNV-KQWLQEIDRYASENV-NKLLVGNKCDLTTK 136 (196)
T ss_dssp EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTC-EEEEEEECTTCTTT
T ss_pred EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhcCCCC-CEEEEEECcccccc
Confidence 789999999999999999999999999999999997521 2222 2233333333 34 59999999999754
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ ....+....+ ++++++||++|.||.+++.
T Consensus 137 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 137 KVVDYT----TAKEFADSLG-----IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp CCSCHH----HHHHHHHHTT-----CCEEEECTTTCTTHHHHHH
T ss_pred cccCHH----HHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Confidence 322222 2233444444 4789999999999998764
No 39
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.82 E-value=9.5e-20 Score=165.55 Aligned_cols=160 Identities=17% Similarity=0.160 Sum_probs=104.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++..... ......+... .....+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 64 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-----------------------------DYDPTIEDSY-LKHTEIDNQ 64 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------CCCTTCCEEE-EEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCcccee-EEEEEeCCc
Confidence 4567899999999999999999998431110 0011112222 222334444
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+. .+..+..+..++.......++| +|+|+||+|+.....
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 140 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA---SFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLRK 140 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTCC
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhccC
Confidence 556788999999999999999999999999999999762 2222222222222222234455 999999999975322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecc-cCCCccccCCc
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDD 465 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAk-tG~gI~e~~~~ 465 (471)
...+ .+..+.+.++ ++++++||+ +|.||.+++..
T Consensus 141 v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 141 VTRD----QGKEMATKYN-----IPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp SCHH----HHHHHHHHHT-----CCEEEEBCSSSCBSHHHHHHH
T ss_pred cCHH----HHHHHHHHhC-----CeEEEeccCCCCCCHHHHHHH
Confidence 2222 2333444444 478999999 99999987643
No 40
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=9e-20 Score=163.97 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=103.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|.+|+|||||+++|++..... ......+.........+...
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDN-----------------------------TYQATIGIDFLSKTMYLEDR 61 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCCSEEEEEEEEEETTE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceeeEEEEEEEEECCe
Confidence 3456899999999999999999998532110 00111222233333334444
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||++.+...+..++..+|++|+|+|++.+.+ +.....++..+... .++ |+++|+||+|+...
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS------FHQTSKWIDDVRTERGSDV-IIMLVGNKTDLSDK 134 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHHTTSS-EEEEEEECGGGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCC-cEEEEEECCccccc
Confidence 4689999999999999999999999999999999986521 22222333233222 234 49999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....++. ..++...+ ++++++||++|.||.+++.
T Consensus 135 ~~~~~~~~----~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 135 RQVSTEEG----ERKAKELN-----VMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp CCSCHHHH----HHHHHHHT-----CEEEEEBTTTTBSHHHHHH
T ss_pred CcCCHHHH----HHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 22222222 22333333 4789999999999998764
No 41
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2e-19 Score=162.46 Aligned_cols=156 Identities=18% Similarity=0.152 Sum_probs=96.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++...... ......+.+.......+....
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----------------------------~~~~t~~~~~~~~~~~~~~~~ 59 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG----------------------------TFISTVGIDFRNKVLDVDGVK 59 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCC----------------------------CCCCCCSCEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCC----------------------------CcCCceeeEEEEEEEEECCEE
Confidence 4568999999999999999999985322100 011122333333333344445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +... ..++..+.. .+. |+++|+||+|+...
T Consensus 60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~-piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS------FDNI-QAWLTEIHEYAQHDV-ALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTC-EEEEEEECCSTTSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhCCCCC-cEEEEEECcccCcc
Confidence 689999999999999999999999999999999997522 2222 223333332 234 59999999999853
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....++ +..+....+ ++++++||++|.||.+++.
T Consensus 132 ~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 132 RVVKRED----GEKLAKEYG-----LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp CCSCHHH----HHHHHHHHT-----CCEEECCTTTCTTHHHHHH
T ss_pred cccCHHH----HHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 2222222 233333334 4789999999999998764
No 42
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.6e-20 Score=168.37 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=109.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++.... .......+.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFD-----------------------------HNISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCC-----------------------------TTCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCC-----------------------------CCcCCCcceeEEEEEEEeCCEE
Confidence 45789999999999999999999853210 0112234555555555566667
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+.+ +... ..++..+.... ..|+|||+||+|+....
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s------~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS------FYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH------HHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH------HHHH-HHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 899999999999999999999999999999999987622 2222 33344444332 23599999999997422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... +.+..++...+ ++++++||++|.||.+++.
T Consensus 145 ~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 145 EVPL----KDAKEYAESIG-----AIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp CSCH----HHHHHHHHTTT-----CEEEECBTTTTBSHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHHHHH
Confidence 2222 23344444443 5889999999999998764
No 43
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=173.29 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=101.7
Q ss_pred CCCcccccCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccc
Q 012085 248 QYKPEKWMLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERE 327 (471)
Q Consensus 248 ~~~~e~~~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~ 327 (471)
+..|+.|+.+....+..+.++|+|+|.+|+|||||+++|++...... ....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t 57 (200)
T 2o52_A 7 HHHHSSGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQD-----------------------------SNHT 57 (200)
T ss_dssp ---------------CCEEEEEEEEESTTSSHHHHHHHHHC---------------------------------------
T ss_pred ccccccccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCcc-----------------------------CCCc
Confidence 34567777777666777889999999999999999999985321100 0011
Q ss_pred cceEEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCC
Q 012085 328 RGITMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGV 405 (471)
Q Consensus 328 ~GiTi~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~v 405 (471)
.+.+.......+......+.||||||++.+...+..+++.+|++|||+|++.+.+ +.....++..+... .++
T Consensus 58 ~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~ 131 (200)
T 2o52_A 58 IGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET------YNSLAAWLTDARTLASPNI 131 (200)
T ss_dssp --CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHTCTTC
T ss_pred ccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH------HHHHHHHHHHHHHhcCCCC
Confidence 2222222333333344789999999999888888889999999999999997522 22222222222222 234
Q ss_pred CeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 406 p~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|||+||+|+......... ....++...+ ++++++||++|.||.+++.
T Consensus 132 -piilv~nK~Dl~~~~~v~~~----~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 132 -VVILCGNKKDLDPEREVTFL----EASRFAQENE-----LMFLETSALTGENVEEAFL 180 (200)
T ss_dssp -EEEEEEECGGGGGGCCSCHH----HHHHHHHHTT-----CEEEEECTTTCTTHHHHHH
T ss_pred -cEEEEEECCCcccccccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 59999999999642222222 2233333333 5889999999999998764
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.82 E-value=1.7e-19 Score=165.56 Aligned_cols=157 Identities=18% Similarity=0.154 Sum_probs=107.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CcCCceeEEEEEEEEEECCe
Confidence 3456899999999999999999998532110 01112344444444445555
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+.+ +... ..++..+... ...|+|||+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES------FAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 6789999999999999999999999999999999986521 2222 2334444443 22359999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... +.+..+.+.++ ++++++||++|.||.+++.
T Consensus 143 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 143 RVVPA----EDGRRLADDLG-----FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp CCSCH----HHHHHHHHHHT-----CEEEECBTTTTBSHHHHHH
T ss_pred cCCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHH
Confidence 22112 22333444444 3789999999999998764
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.82 E-value=4.7e-20 Score=164.43 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|+|||||+++|++..... .....+.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP------------------------------EAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC------------------------------CCCccccceE-EEEEECCEEEE
Confidence 4789999999999999999998532111 0112233332 22334555678
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCCh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~~ 422 (471)
+.+|||||++.+...+..+++.+|++|+|+|++... .+.....++..+... .++| +|+|+||+|+.....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG------SFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE 123 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHH------HHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc
Confidence 999999999999988889999999999999999652 233333333333332 2455 999999999975432
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+ ....+....+ ++++++||++|.||.+++.
T Consensus 124 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 124 VSVD----EGRACAVVFD-----CKFIETSAALHHNVQALFE 156 (166)
T ss_dssp SCHH----HHHHHHHHTT-----CEEEECBGGGTBSHHHHHH
T ss_pred cCHH----HHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Confidence 2222 2223333333 4889999999999998764
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.81 E-value=1.6e-19 Score=161.03 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=107.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++.... .......+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFD-----------------------------PNINPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCC-----------------------------CCCCCceeEEEEEEEEEECCeE
Confidence 35689999999999999999999853210 0112234555554555555566
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +. ....++..+.... ..|+++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~-~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET------FS-TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH------HH-HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH------HH-HHHHHHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 789999999999999998999999999999999996521 22 2233444444332 23599999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... +.+..+....+ ++++++||++|.|+.+++.
T Consensus 128 ~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 128 EVME----RDAKDYADSIH-----AIFVETSAKNAININELFI 161 (170)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CEEEEEeCCCCcCHHHHHH
Confidence 2111 22333333333 4789999999999998764
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.81 E-value=1.2e-19 Score=163.11 Aligned_cols=155 Identities=18% Similarity=0.158 Sum_probs=105.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMA-----------------------------DCPHTIGVEFGTRIIEVSGQK 63 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCTTSCCCCEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCccceEEEEEEEEECCeE
Confidence 356899999999999999999999532110 011123333434444445556
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.... .++..+.. .+. |+++|+||+|+...
T Consensus 64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 64 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST------YNHLS-SWLTDARNLTNPNT-VIILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH------HHTHH-HHHHHHHHHSCTTC-EEEEEEECTTCGGG
T ss_pred EEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH------HHHHH-HHHHHHHHhcCCCC-cEEEEEECcccccc
Confidence 789999999999999999999999999999999997622 22222 22332332 233 59999999999643
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... +.+..++...+ ++++++||++|.||.+++.
T Consensus 136 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 136 RDVTY----EEAKQFAEENG-----LLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHH
T ss_pred cccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 22222 23334444444 4889999999999998764
No 48
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=1e-19 Score=161.91 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=102.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++..... ......+.........+.....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 54 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-----------------------------DYKKTIGVDFLERQIQVNDEDV 54 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------CSSCCCSSSEEEEEEEETTEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCceEEEEEEEEEEECCEEE
Confidence 46899999999999999999998532110 0011122222223333444456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCChh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~e 423 (471)
.+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....+...+.... +.| +++|+||+|+......
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 127 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES------FEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSCI 127 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCSS
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECcccCccccc
Confidence 89999999999998888899999999999999996521 222222222232222 445 9999999999743221
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ .+..++...+ ++++++||++|.||.+++.
T Consensus 128 ~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 128 KNE----EAEGLAKRLK-----LRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp CHH----HHHHHHHHHT-----CEEEECBTTTTBSSHHHHH
T ss_pred CHH----HHHHHHHHcC-----CeEEEEecCCCCCHHHHHH
Confidence 222 2333444444 4789999999999998764
No 49
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.81 E-value=9.5e-20 Score=169.95 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=102.5
Q ss_pred cCCCCcCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEE
Q 012085 255 MLPDKKGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTV 334 (471)
Q Consensus 255 ~~~~~~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~ 334 (471)
.....+......++|+|+|.+|+|||||+++|++..... ....+.+.....
T Consensus 18 ~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~ 68 (201)
T 2hup_A 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE-----------------------------RQGSTIGVDFTM 68 (201)
T ss_dssp --------CCEEEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------------CEEE
T ss_pred CCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCC-----------------------------CCCCCcceEEEE
Confidence 334444455667999999999999999999998522100 000111222222
Q ss_pred EEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEE
Q 012085 335 AVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAV 412 (471)
Q Consensus 335 ~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVv 412 (471)
....+......+.||||||++++...+..+++.+|++|||+|++... .+..... ++..+... ...|+|||+
T Consensus 69 ~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~-~~~~i~~~~~~~~piilv~ 141 (201)
T 2hup_A 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRS------SFLSVPH-WIEDVRKYAGSNIVQLLIG 141 (201)
T ss_dssp EEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHH------HHHTHHH-HHHHHHHHSCTTCEEEEEE
T ss_pred EEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHH------HHHHHHH-HHHHHHHhcCCCCCEEEEE
Confidence 22233333468999999999999999999999999999999998652 1222222 33333322 223599999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
||+|+........ +.+..++...++ .+++++||++|.||.+++.
T Consensus 142 NK~Dl~~~~~v~~----~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 142 NKSDLSELREVSL----AEAQSLAEHYDI----LCAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp ECTTCGGGCCSCH----HHHHHHHHHTTC----SEEEECBTTTTBSHHHHHH
T ss_pred ECCccccccccCH----HHHHHHHHHcCC----CEEEEEeCCCCCCHHHHHH
Confidence 9999974222122 233344444443 2789999999999998764
No 50
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=8.6e-20 Score=162.41 Aligned_cols=152 Identities=19% Similarity=0.163 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..... ..++.+. ....+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~------------------------------~~~t~~~----~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT------------------------------TIPTIGF----NVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC------------------------------CCCCSSC----CEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc------------------------------ccCcCce----eEEEEEECCEEE
Confidence 479999999999999999998532100 0011111 112244567899
Q ss_pred EEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChhh
Q 012085 347 VVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 347 ~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..++... ...|+++|+||+|+... ..
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MN 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CC
Confidence 99999999999988888999999999999999652 2333344444444322 22359999999999753 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+++...+. ........++++++||++|.||.+++.
T Consensus 119 ~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 119 AAEITDKLG----LHSLRHRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp HHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHhC----cccccCccEEEEEcccCCCcCHHHHHH
Confidence 223333222 111222346799999999999998764
No 51
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=4.9e-20 Score=173.21 Aligned_cols=159 Identities=20% Similarity=0.177 Sum_probs=106.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKN 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~ 343 (471)
..++|+|+|.+|+|||||+|+|++..... ......+.|.......+. ..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~~~~~~ 78 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA-----------------------------FASKTPGRTQHINYFSVGPAAE 78 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS-----------------------------CTTCCCCSCCCEEEEEESCTTS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce-----------------------------eecCCCCcccceEEEEecCCCC
Confidence 46789999999999999999999642100 011123444444444444 566
Q ss_pred eEEEEEeCCCCCC----------chh---hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEE
Q 012085 344 YHVVVLDSPGHKD----------FVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG~e~----------f~~---~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIV 410 (471)
..++||||||+.. +.. .++.....+|++|||+|+..+ +.....+++..+...++| +|+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~i~ 149 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-IHS 149 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-EEE
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEE
Confidence 8899999999532 233 333344458899999999976 334556667777777777 999
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhc---CCCCCCccEEEEecccCCCccccCC
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSC---GFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~---g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+||+|+.. ..........+...+..+ +. ...++|+++||++|.||.+++.
T Consensus 150 v~nK~Dl~~--~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~ 203 (223)
T 4dhe_A 150 LLTKCDKLT--RQESINALRATQKSLDAYRDAGY-AGKLTVQLFSALKRTGLDDAHA 203 (223)
T ss_dssp EEECGGGSC--HHHHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEBTTTTBSHHHHHH
T ss_pred EEeccccCC--hhhHHHHHHHHHHHHHhhhhccc-CCCCeEEEeecCCCcCHHHHHH
Confidence 999999984 333333444444444432 11 1346899999999999988754
No 52
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=167.68 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=103.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|.+|+|||||+++|++..... ......+... .....+...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 60 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------------------------DYEPTKADSY-RKKVVLDGE 60 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCT-----------------------------TCCTTCCEEE-EEEEEETTE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceEE-EEEEEECCE
Confidence 3567899999999999999999999532100 0001112221 122233344
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~ 419 (471)
...+.||||||++.+...+..+++.+|++|+|+|++... .+.....++..+.... ++| +|||+||+|+..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 133 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME------SFAATADFREQILRVKEDENVP-FLLVGNKSDLED 133 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCGG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCccc
Confidence 468999999999999999999999999999999999652 2223333333333322 455 999999999975
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
......++ +..++...+ ++++++||++|.||.+++.
T Consensus 134 ~~~~~~~~----~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 134 KRQVSVEE----AKNRAEQWN-----VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp GCCSCHHH----HHHHHHHHT-----CEEEEECTTTCTTHHHHHH
T ss_pred cccccHHH----HHHHHHHhC-----CeEEEEeCCCCCCHHHHHH
Confidence 32222223 333333333 4789999999999998764
No 53
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.81 E-value=5.7e-20 Score=168.67 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=103.3
Q ss_pred cCCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe
Q 012085 260 KGDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF 339 (471)
Q Consensus 260 ~~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~ 339 (471)
....++.++|+|+|.+|+|||||+++|++..... ......+.+.......+
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~ 64 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----------------------------RTEATIGVDFRERAVDI 64 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------------SCCCCCSCCEEEEEEEE
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCcceEEEEEEEEE
Confidence 3345678999999999999999999998532110 01112233333333334
Q ss_pred cCCCeEEEEEeCCCCCCch-hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCC
Q 012085 340 DSKNYHVVVLDSPGHKDFV-PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKM 415 (471)
Q Consensus 340 ~~~~~~l~LIDTPG~e~f~-~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKi 415 (471)
......+.||||||++++. ..+..+++.+|++|||+|++...+ +.....+...+... .+.| +|||+||+
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s------~~~~~~~~~~i~~~~~~~~~p-iilv~nK~ 137 (189)
T 1z06_A 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS------FHSLPAWIEECKQHLLANDIP-RILVGNKC 137 (189)
T ss_dssp TTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHCCCSCCC-EEEEEECT
T ss_pred CCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH------HHHHHHHHHHHHHhcCCCCCC-EEEEEECc
Confidence 4445789999999999888 777888999999999999996522 22223333333332 2445 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccC---CCccccCCc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALEN---QNLVTAPDD 465 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG---~gI~e~~~~ 465 (471)
|+........ +.+..+....+ ++++++||++| .||.+++..
T Consensus 138 Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 138 DLRSAIQVPT----DLAQKFADTHS-----MPLFETSAKNPNDNDHVEAIFMT 181 (189)
T ss_dssp TCGGGCCSCH----HHHHHHHHHTT-----CCEEECCSSSGGGGSCHHHHHHH
T ss_pred cccccceeCH----HHHHHHHHHcC-----CEEEEEeCCcCCcccCHHHHHHH
Confidence 9964322111 22333434444 47899999999 999887653
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.81 E-value=1.4e-19 Score=164.67 Aligned_cols=156 Identities=14% Similarity=0.107 Sum_probs=102.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEE-EEEEEecC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMT-VAVAYFDS 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~ 341 (471)
....++|+|+|.+|+|||||+++|++..... ......+.... .....+..
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 58 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-----------------------------KFITTVGIDFREKRVVYRAN 58 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEEEEEEEEECTT
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CcccccceeeeeEEEEEecC
Confidence 3456899999999999999999998532100 00111222222 22222222
Q ss_pred C---------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeE
Q 012085 342 K---------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQL 408 (471)
Q Consensus 342 ~---------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~I 408 (471)
. ...+.||||||++.+...+..+++.+|++|||+|++.+.+ +.... .++..+.. .++| +
T Consensus 59 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~i~~~~~~~~~p-i 130 (195)
T 3bc1_A 59 GPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS------FLNVR-NWISQLQMHAYSENPD-I 130 (195)
T ss_dssp SCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH------HHTHH-HHHHHHHHHSSSSSCC-E
T ss_pred CcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhcCCCCCC-E
Confidence 2 4689999999999999999999999999999999986522 22222 33333332 2444 9
Q ss_pred EEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 409 IVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|||+||+|+........ +.+..++...+ ++++++||++|.||.+++.
T Consensus 131 ilv~nK~Dl~~~~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 131 VLCGNKSDLEDQRAVKE----EEARELAEKYG-----IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEECTTCGGGCCSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcccccccccCH----HHHHHHHHHcC-----CCEEEEECCCCCCHHHHHH
Confidence 99999999974222112 22333444444 4789999999999988764
No 55
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.81 E-value=2.3e-20 Score=201.37 Aligned_cols=142 Identities=35% Similarity=0.453 Sum_probs=107.0
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
+..+.+||+|+||.++|||||+.+|+...+.+.... ....+. ......+|....|+++|+|+......+.+
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G-------~V~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~ 97 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAG-------SVKARK--AARHATSDWMAMERERGISVTTSVMQFPY 97 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHH-------HHHHC----------------------CTTTEEEEEE
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccc-------eeecCc--cccccccCChHHHHHCCCcEeeceEEEEE
Confidence 345678999999999999999999998877664321 111111 11124688999999999999999999999
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.++.|+|||||||.+|...+.+.++.+|++|+|||+..| ++.|++..++++...++| +|+++||||+...+
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATP-VMTFVNKMDREALH 168 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSCCCC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCc-eEEEEecccchhcc
Confidence 999999999999999999999999999999999999988 789999999999999999 89999999998654
No 56
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=3.9e-19 Score=164.65 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=105.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++..... ......+.+.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTP-----------------------------AFVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCS-----------------------------CCCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEEEEEEEECCeEE
Confidence 46899999999999999999998532110 0111234444444444555567
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||++.+...+..+++.+|++|||+|++.+. .+.... .++..+... ...|+|||+||+|+.....
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEE------SFNAVQ-DWSTQIKTYSWDNAQVLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHH------HHHHHH-HHHHHHHHHSCSSCEEEEEEECTTCTTSCC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHH------HHHHHH-HHHHHHHHhcCCCCCEEEEEECcccCcccc
Confidence 8999999999999999999999999999999998652 122222 233333332 2235999999999975322
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+ .+..+...++ ++++++||++|.||.+++.
T Consensus 131 ~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 131 VSSE----RGRQLADHLG-----FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp SCHH----HHHHHHHHHT-----CEEEECBTTTTBSSHHHHH
T ss_pred cCHH----HHHHHHHHCC-----CeEEEEECCCCCCHHHHHH
Confidence 2222 2333334444 3789999999999988764
No 57
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=1.9e-19 Score=160.88 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=97.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 54 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFND-----------------------------KHITTLGASFLTKKLNIGGKR 54 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCS-----------------------------SCCCCCSCEEEEEEEESSSCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCc-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 356899999999999999999999532110 001122333333333444455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+.+ +.... .++..+.. .+. |+++|+||+|+...
T Consensus 55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~-~~~~~~~~~~~~~~-piilv~nK~Dl~~~ 126 (170)
T 1z08_A 55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS------FQKVK-NWVKELRKMLGNEI-CLCIVGNKIDLEKE 126 (170)
T ss_dssp EEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH------HHHHH-HHHHHHHHHHGGGS-EEEEEEECGGGGGG
T ss_pred EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhcCCCC-eEEEEEECcccccc
Confidence 689999999999999888889999999999999986521 22222 22222222 244 49999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... +.+..+++..+ ++++++||++|.||.+++.
T Consensus 127 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 127 RHVSI----QEAESYAESVG-----AKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEEEBTTTTBSHHHHHH
T ss_pred cccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Confidence 22222 22333444443 4789999999999998764
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.81 E-value=9.9e-20 Score=164.85 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=102.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|+|||||+++|++..... ......+... .....+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~~ 65 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVE-----------------------------DYEPTKADSY-RKKVVLDGEE 65 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCC-----------------------------cCCCccceEE-EEEEEECCEE
Confidence 456899999999999999999999532100 0001111111 1122233444
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++++...+..+++.+|++|+|+|++... .+.....++..+.... ++| +|||+||+|+...
T Consensus 66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~ 138 (187)
T 2a9k_A 66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME------SFAATADFREQILRVKEDENVP-FLLVGNKSDLEDK 138 (187)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 68999999999999999999999999999999999652 1222333333333322 455 9999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... ..+..+++..+ ++++++||++|.||.+++.
T Consensus 139 ~~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 139 RQVSV----EEAKNRAEQWN-----VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp CCSCH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHH
T ss_pred CccCH----HHHHHHHHHcC-----CeEEEeCCCCCCCHHHHHH
Confidence 22222 23334444444 4789999999999998764
No 59
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.81 E-value=1.1e-19 Score=165.14 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.........+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNS-----------------------------TFISTIGIDFKIRTIELDGKR 56 (183)
T ss_dssp SEEEEEEEECCCCC---------------------------------------------CHHHHHCEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 356899999999999999999998421100 001112222222233333344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+.... .++..+... ...|+|||+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEK------SFDNIR-NWIRNIEEHASADVEKMILGNKCDVNDKR 129 (183)
T ss_dssp EEEEEEEC---------CCTTTTTCSEEEEEEETTCHH------HHHHHH-HHHHHHHHHSCTTCEEEEEEEC--CCSCC
T ss_pred EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHH------HHHHHH-HHHHHHHHhcCCCCCEEEEEECccCCccC
Confidence 78999999999999988889999999999999999652 122222 333333332 123599999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ .+..++...+ ++++++||++|.||.+++.
T Consensus 130 ~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 130 QVSKE----RGEKLALDYG-----IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CSCHH----HHHHHHHHHT-----CEEEECCC---CCHHHHHH
T ss_pred cCCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 22222 2333444444 4789999999999998764
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.81 E-value=1e-19 Score=165.30 Aligned_cols=153 Identities=20% Similarity=0.157 Sum_probs=97.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++....... .... .+.......+.....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~-~~~~~~~~~~~~~~~ 52 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY-----------------------------DPTI-EDSYRKQVVIDGETC 52 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC-----------------------------CTTC-CEEEEEEEEETTEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCc-hheEEEEEEECCcEE
Confidence 5689999999999999999999853211000 0001 111122223444456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|++... . +.....++..+.. ..+.| +|+|+||+|+....
T Consensus 53 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s---~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 53 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK---S---FEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT 125 (189)
T ss_dssp EEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH---H---HHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc
Confidence 6889999999999999999999999999999999652 1 2222233223322 22455 99999999997422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... +.+..+....+ ++++++||++|.||.+++.
T Consensus 126 -~~~----~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 126 -VDT----KQAQDLARSYG-----IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp -SCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHHHHH
T ss_pred -cCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 111 22333333334 4789999999999998764
No 61
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=3.7e-20 Score=169.19 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=103.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEE-EecC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVA-YFDS 341 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~-~~~~ 341 (471)
....++|+|+|.+|||||||++.|.+.......... ........++.+.+...... .+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~-------------------~~~~~~~~~t~~~~~~~~~~~~~~~ 71 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEM-------------------VSLATEDERTLFFDFLPLDIGEVKG 71 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCC-------------------EEEECSSCEEEEEEECCSSCCCSSS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccc-------------------cccccccccceeeeecccccccccC
Confidence 345789999999999999999877643221110000 00000011111111111111 2334
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiDl 417 (471)
....+.||||||++.|...+..+++.+|++|+|+|++.+....+...+.. +..++... ...|+|||+||+|+
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~----l~~~l~~~~~~~~~~piilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN----MRENLAEYGLTLDDVPIVIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHH----HHHHHHHTTCCTTSSCEEEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHH----HHHHHHhhccccCCCCEEEEEEchhc
Confidence 45789999999999999999999999999999999995532222222222 22233322 22349999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... .. .+.+..++...++ .+++++||++|.||.+++.
T Consensus 148 ~~~--~~----~~~~~~~~~~~~~----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 148 PDA--LP----VEMVRAVVDPEGK----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp TTC--CC----HHHHHHHHCTTCC----SCEEECBGGGTBTHHHHHH
T ss_pred ccc--cC----HHHHHHHHHhcCC----ceEEEEecCCCcCHHHHHH
Confidence 753 22 2334445444332 2789999999999998764
No 62
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=7.5e-20 Score=168.24 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=106.9
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|.+|+|||||+++|++..... ....+.+.+. ..+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~----~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE-----------------------------DMIPTVGFNM----RKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEE----EEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------ccCCCCceeE----EEEEeC
Confidence 3557899999999999999999998532110 0011122222 224456
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~ 419 (471)
...+.||||||++++...+..+++.+|++|||+|++... .+.....++..++.. .++| +|||+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE------KIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 889999999999999988889999999999999998652 233444454455443 3455 999999999975
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ..+++.+.+. ........++++++||++|.||.+++..
T Consensus 139 ~~--~~~~~~~~~~----~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 178 (188)
T 1zd9_A 139 AL--DEKELIEKMN----LSAIQDREICCYSISCKEKDNIDITLQW 178 (188)
T ss_dssp CC--CHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred CC--CHHHHHHHhC----hhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence 31 1222222222 1112224568999999999999987653
No 63
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.81 E-value=6.5e-20 Score=199.62 Aligned_cols=167 Identities=26% Similarity=0.429 Sum_probs=107.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC---
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 341 (471)
+.+||+|+|++++|||||+++|++..+.+....+ ..+.++....++++|+|+......+.+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~~ 66 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKAS 66 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEecC
Confidence 4689999999999999999999976655433211 134567778888999998766655543
Q ss_pred --CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 342 --KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 342 --~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
..+.++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+..
T Consensus 67 ~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g--------v~~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG--------VEAQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC--------CCTHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 347899999999999999999999999999999999987 345677777777777887 999999999986
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .+++.+.+... +++.. ..++++||++|.||.+++.
T Consensus 138 a~---~~~v~~ei~~~---lg~~~--~~vi~vSAktg~GI~~Ll~ 174 (599)
T 3cb4_D 138 AD---PERVAEEIEDI---VGIDA--TDAVRCSAKTGVGVQDVLE 174 (599)
T ss_dssp CC---HHHHHHHHHHH---TCCCC--TTCEEECTTTCTTHHHHHH
T ss_pred cc---HHHHHHHHHHH---hCCCc--ceEEEeecccCCCchhHHH
Confidence 43 33344444444 34422 3579999999999987653
No 64
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.81 E-value=1.3e-19 Score=163.33 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=101.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ......+.... ....+....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 56 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVS-----------------------------DYDPTIEDSYT-KICSVDGIP 56 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCS-----------------------------SCCTTCCEEEE-EEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCcc-----------------------------ccCCCcCceEE-EEEEECCEE
Confidence 456899999999999999999999531100 00111222222 222233334
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++++...+..+++.+|++|+|+|++... .+.....++..++.. .++| +|||+||+|+...
T Consensus 57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 129 (181)
T 2fn4_A 57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ------SFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLESQ 129 (181)
T ss_dssp EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccc
Confidence 68899999999999888888999999999999999652 122233333333332 3455 9999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ ....+.... .++++++||++|.||.+++.
T Consensus 130 ~~v~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 130 RQVPRS----EASAFGASH-----HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp CCSCHH----HHHHHHHHT-----TCEEEECBTTTTBSHHHHHH
T ss_pred cccCHH----HHHHHHHHc-----CCeEEEecCCCCCCHHHHHH
Confidence 221111 222333333 35889999999999998764
No 65
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=2.4e-19 Score=166.06 Aligned_cols=156 Identities=17% Similarity=0.168 Sum_probs=103.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-----------------------------QYKATIGADFLTKEVMVDDRL 56 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCCSEEEEEEEEESSSCE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-----------------------------CCCCcccceEEEEEEEECCEE
Confidence 456899999999999999999998532110 011122333333333344455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh------cCCCeEEEEEeCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMDA 417 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------~~vp~IIVVvNKiDl 417 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....+...+... .++| +|||+||+|+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT------FKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL 129 (207)
T ss_dssp EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH------HHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH------HHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence 789999999999999888899999999999999986622 22222333333332 2445 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ....+ .+..+.... ..++++++||++|.||.+++.
T Consensus 130 ~~~-~~~~~----~~~~~~~~~----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 130 ENR-QVATK----RAQAWCYSK----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp SCC-CSCHH----HHHHHHHHT----TSCCEEECBTTTTBSHHHHHH
T ss_pred ccc-ccCHH----HHHHHHHhc----CCceEEEEeCCCCCCHHHHHH
Confidence 732 22222 222333211 245789999999999998764
No 66
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.81 E-value=7.9e-20 Score=166.79 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=104.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++.. .. ....+.+.+. ..+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~----------------------------~~~~t~~~~~----~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VD----------------------------TISPTLGFNI----KTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CS----------------------------SCCCCSSEEE----EEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CC----------------------------cccccCccce----EEEEECC
Confidence 456899999999999999999999532 00 0011122221 2233357
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+.....++..++.. ....|+|+|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ------RMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA- 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-
Confidence 89999999999999999999999999999999999762 233333444444443 122359999999999753
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++.+.+ .........++++++||++|.||.+++.
T Consensus 135 -~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 135 -LSCNAIQEAL----ELDSIRSHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp -CCHHHHHHHT----TGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred -CCHHHHHHHh----ChhhccCCceEEEEeeCCCCCCHHHHHH
Confidence 2222333222 1111223456899999999999998764
No 67
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=1.6e-19 Score=165.47 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=104.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|||||||+++|++.... ....+.|.+. ..+...+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~------------------------------~~~~t~g~~~----~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS------------------------------HITPTQGFNI----KSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE------------------------------EEEEETTEEE----EEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC------------------------------cccCcCCeEE----EEEEECC
Confidence 34689999999999999999999852110 1112233222 1233357
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++... .+.....++..++.. .+.| +|+|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK------RFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG------GHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH------HHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 89999999999999998899999999999999998652 233333444444432 2444 9999999999753
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. ..+++.+.+. ........++++++||++|+||.+++..
T Consensus 133 ~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 171 (181)
T 1fzq_A 133 A--PASEIAEGLN----LHTIRDRVWQIQSCSALTGEGVQDGMNW 171 (181)
T ss_dssp C--CHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred C--CHHHHHHHhC----chhccCCceEEEEccCCCCCCHHHHHHH
Confidence 2 2222222221 1112234568999999999999987653
No 68
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=6.9e-20 Score=167.61 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=106.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++.... .......+.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 62 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFD-----------------------------PELAATIGVDFKVKTISVDGN 62 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCC-----------------------------TTCCCCCSEEEEEEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------ccCCCccceEEEEEEEEECCe
Confidence 345689999999999999999999853211 011122344444444555556
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~ 419 (471)
...+.||||||++.+...+..+++.+|++|||+|++.+.+ +.... .++..+... ...|+|||+||+|+..
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~-~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT------FVKLD-NWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH------HHTHH-HHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 6789999999999999999999999999999999986521 22222 233333332 2235999999999964
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... .. +.+..++...+ ++++++||++|.||.+++.
T Consensus 136 ~~~-~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 136 REV-DR----NEGLKFARKHS-----MLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp CCS-CH----HHHHHHHHHTT-----CEEEECCTTTCTTHHHHHH
T ss_pred ccc-CH----HHHHHHHHHcC-----CEEEEecCCCCCCHHHHHH
Confidence 211 11 22333444443 4789999999999988754
No 69
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.4e-20 Score=167.28 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=100.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ...+.+.+. ..+...+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 59 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH------------------------------TSPTIGSNV----EEIVINN 59 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEE------------------------------EECCSCSSC----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------CcCCCccce----EEEEECC
Confidence 356899999999999999999999422110 001111111 1122356
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+.....++..++.. ....|+|+|+||+|+...
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~- 132 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE------RISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC- 132 (187)
T ss_dssp EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT------THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH------HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC-
Confidence 89999999999999999889999999999999999762 233444444444443 123359999999999742
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++.+.+. ...+....++++++||++|.||.+++.
T Consensus 133 -~~~~~i~~~~~----~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 133 -MTVAEISQFLK----LTSIKDHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp -CCHHHHHHHHT----GGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred -CCHHHHHHHhC----hhhhcCCCcEEEEccCCCCcCHHHHHH
Confidence 12233333322 211223456899999999999998764
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.80 E-value=5.8e-20 Score=165.70 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=91.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SK 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~ 342 (471)
.+.++|+|+|.+|+|||||+++|++...... .....+.+.......+. ..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 56 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----------------------------YKATIGADFLTKEVTVDGDK 56 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTT-----------------------------C---CCCSCEEEEECCSSSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcc-----------------------------cCCccceEEEEEEEEEcCCc
Confidence 4568999999999999999999985321100 00111222222222232 33
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh------cCCCeEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAVNKMD 416 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~------~~vp~IIVVvNKiD 416 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....+...+... .++| ++||+||+|
T Consensus 57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D 129 (182)
T 1ky3_A 57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS------FENIKSWRDEFLVHANVNSPETFP-FVILGNKID 129 (182)
T ss_dssp CEEEEEECCC----------CCSTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTT
T ss_pred EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH------HHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCc
Confidence 5689999999999999999999999999999999997622 22222222233222 3444 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+........ .+.+..+.... ..++++++||++|.||.+++.
T Consensus 130 l~~~~~~v~---~~~~~~~~~~~----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 130 AEESKKIVS---EKSAQELAKSL----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp SCGGGCCSC---HHHHHHHHHHT----TSCCEEEEBTTTTBSHHHHHH
T ss_pred cccccccCC---HHHHHHHHHhc----CCCeEEEEecCCCCCHHHHHH
Confidence 963211111 12222333222 245789999999999998764
No 71
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.80 E-value=4.9e-19 Score=164.61 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=104.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 56 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-----------------------------DYISTIGVDFKIKTVELDGKT 56 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-----------------------------TCCCSSCCCEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcccceeEEEEEEECCEE
Confidence 346899999999999999999998532110 011122333333333344445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|||+|++.+.+ +.... .++..+... ...|+|||+||+|+....
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s------~~~~~-~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES------FNGVK-MWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp EEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH------HHHHH-HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred EEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH------HHHHH-HHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 689999999999999999999999999999999997521 22222 233333332 223599999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ .+..+....+ ++++++||++|.||.+++.
T Consensus 130 ~~~~~----~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 130 VVEYD----VAKEFADANK-----MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp CSCHH----HHHHHHHHTT-----CCEEECCTTTCTTHHHHHH
T ss_pred ccCHH----HHHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 22222 2233333333 4789999999999998764
No 72
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.80 E-value=1.4e-19 Score=166.70 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=105.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~ 69 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPT-----------------------------AYVPTVFENFS-HVMKYKNE 69 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEEETTE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------ccCCeeeeeeE-EEEEECCE
Confidence 4567899999999999999999998532100 00111222222 12234444
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~ 421 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+. .+......++..+... ...|+|||+||+|+....
T Consensus 70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 143 (194)
T 3reg_A 70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT------SFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG 143 (194)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT
T ss_pred EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC
Confidence 567899999999999999999999999999999999652 2333323444444433 223599999999997431
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ...+.+..+.+..++ ..++++||++|.||.+++.
T Consensus 144 ~~~--~~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 144 SDD--VTKQEGDDLCQKLGC----VAYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp TTC--CCHHHHHHHHHHHTC----SCEEECBTTTTBSHHHHHH
T ss_pred CCc--ccHHHHHHHHHhcCC----CEEEEeecCCCCCHHHHHH
Confidence 111 112334444444454 1389999999999998764
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.80 E-value=4.4e-19 Score=156.65 Aligned_cols=153 Identities=19% Similarity=0.160 Sum_probs=99.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++...... .....+... .....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----------------------------~~~~~~~~~-~~~~~~~~~~~ 51 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------------CDPTIEDSY-RKQVVIDGETC 51 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSC-----------------------------CCTTCCEEE-EEEEEETTEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccc-----------------------------cCCccceEE-EEEEEECCEEE
Confidence 457899999999999999999985321100 000011111 11222334456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++++...+..++..+|++|+|+|++... .+.....+...+.... +.| +++|+||+|+...
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~- 123 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK------SFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAAR- 123 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCC-
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhc-
Confidence 7899999999999988888999999999999998652 1222222222222222 455 9999999999752
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... +.+..+....+ ++++++||++|.|+.+++.
T Consensus 124 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 124 TVES----RQAQDLARSYG-----IPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CSCH----HHHHHHHHHHT-----CCEEEECTTTCTTHHHHHH
T ss_pred ccCH----HHHHHHHHHcC-----CeEEEecCCCCCCHHHHHH
Confidence 1111 22333334444 3789999999999998764
No 74
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=169.01 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=100.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++..... ......+... .....+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 70 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE-----------------------------GYDPTVENTY-SKIVTLGKD 70 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------CCCCCSEEEE-EEEEC----
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC-----------------------------CCCCccceEE-EEEEEECCE
Confidence 3567899999999999999999999532110 0011122222 223334456
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~ 419 (471)
...+.||||||++.+...+..+++.+|++|+|+|++... . +.....++..+.. ..++| +|||+||+|+..
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH---S---FQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSP 143 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH---H---HHHHHHHHHHHHC-----CCC-EEEEEECTTCGG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH---H---HHHHHHHHHHHHHhcCCCCCC-EEEEEECccCcc
Confidence 678999999999999999999999999999999999652 2 2222222222222 22455 999999999974
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
....... ....+....+ ++++++||++|.||.+++..
T Consensus 144 ~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~~ 180 (201)
T 3oes_A 144 EREVQAV----EGKKLAESWG-----ATFMESSARENQLTQGIFTK 180 (201)
T ss_dssp GCCSCHH----HHHHHHHHHT-----CEEEECCTTCHHHHHHHHHH
T ss_pred ccccCHH----HHHHHHHHhC-----CeEEEEeCCCCCCHHHHHHH
Confidence 3222222 2233333334 47899999999999987643
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.80 E-value=4.9e-19 Score=160.97 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=102.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++...... .....+.+.......+....
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 58 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD-----------------------------SNHTIGVEFGSKIINVGGKY 58 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT-----------------------------CCCCSEEEEEEEEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceEEEEEEEEECCEE
Confidence 4568999999999999999999985321110 01112222223333333344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....+ +..+.. .++ |++||+||+|+...
T Consensus 59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~-~~~~~~~~~~~~-piilv~nK~Dl~~~ 130 (186)
T 2bme_A 59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET------YNALTNW-LTDARMLASQNI-VIILCGNKKDLDAD 130 (186)
T ss_dssp EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH------HHTHHHH-HHHHHHHSCTTC-EEEEEEECGGGGGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH------HHHHHHH-HHHHHHhcCCCC-cEEEEEECcccccc
Confidence 689999999999999999999999999999999997522 2222222 222222 233 59999999999642
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ .+..++...+ ++++++||++|.||.+++.
T Consensus 131 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 131 REVTFL----EASRFAQENE-----LMFLETSALTGENVEEAFV 165 (186)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCTTTCTTHHHHHH
T ss_pred cccCHH----HHHHHHHHcC-----CEEEEecCCCCCCHHHHHH
Confidence 222222 2233333433 5889999999999998764
No 76
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.80 E-value=2.3e-19 Score=166.31 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=102.6
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEE--EEEEEEe
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITM--TVAVAYF 339 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi--~~~~~~~ 339 (471)
...+.++|+|+|.+|||||||+++|++..... ...+... ......+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~ 63 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--------------------------------ETLFLESTNKIYKDDI 63 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--------------------------------GGGGCCCCCSCEEEEE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--------------------------------ceeeeccccceeeeec
Confidence 45567899999999999999999888531111 0011111 1111112
Q ss_pred -cCCCeEEEEEeCCCCCCchhhh---hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 340 -DSKNYHVVVLDSPGHKDFVPNM---ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 340 -~~~~~~l~LIDTPG~e~f~~~~---~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
......+.||||||+++|.... ..+++.+|++|||+|++.. +.. .+.....++..+.......|+|||+||+
T Consensus 64 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~---~~~~~~~~l~~~~~~~~~~piilv~nK~ 139 (196)
T 3llu_A 64 SNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YME---ALTRLHITVSKAYKVNPDMNFEVFIHKV 139 (196)
T ss_dssp CCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC-CHH---HHHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred cCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc-hHH---HHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 2456789999999999987777 7889999999999999975 211 1222222222222222233599999999
Q ss_pred CCCCCC--hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 416 DAVQYS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 416 Dl~~~~--~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+.... .+....+.......+.........++|+++||++ .||.++|..
T Consensus 140 Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~ 190 (196)
T 3llu_A 140 DGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSK 190 (196)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHH
T ss_pred ccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHH
Confidence 997421 1112233333333344433333457899999999 999987643
No 77
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=6.2e-20 Score=199.61 Aligned_cols=168 Identities=30% Similarity=0.394 Sum_probs=111.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC--
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (471)
.+.++|+|+|++++|||||+++|++..+.+....+ -.+.++....++++|+|+......+.+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 35689999999999999999999976554433210 134567777888899988644433322
Q ss_pred ---CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 342 ---KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ---~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
..+.++|||||||.+|...+..+++.+|++|||+|+..+ ...++.+++..+...++| +|+|+||+|+.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~ 138 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLP 138 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTST
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCcc
Confidence 347899999999999999999999999999999999987 456777777777788887 99999999998
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... .+++.+.+... +++. ...++++||++|.||.+++.
T Consensus 139 ~a~---~~~v~~el~~~---lg~~--~~~vi~vSAktg~GI~~Lle 176 (600)
T 2ywe_A 139 SAD---VDRVKKQIEEV---LGLD--PEEAILASAKEGIGIEEILE 176 (600)
T ss_dssp TCC---HHHHHHHHHHT---SCCC--GGGCEECBTTTTBSHHHHHH
T ss_pred ccC---HHHHHHHHHHh---hCCC--cccEEEEEeecCCCchHHHH
Confidence 643 23344444433 3442 23579999999999987653
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.80 E-value=1.1e-19 Score=168.09 Aligned_cols=154 Identities=16% Similarity=0.045 Sum_probs=102.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|||||||+++|++..... ...+.+.+ ...+...+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~------------------------------~~~t~~~~----~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT------------------------------LQPTWHPT----SEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC------------------------------CCCCCSCE----EEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cccCCCCC----eEEEEECC
Confidence 345789999999999999999998532110 01112221 12233456
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..++.. .+.| +|+|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE------RFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH------HHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 89999999999999988888999999999999999762 233334444444432 3444 9999999999752
Q ss_pred ChhhHHHHHHHHHHHHHhcC-------CCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCG-------FKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g-------~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...++ +.+.+.... .....++++++||++|+||.+++.
T Consensus 140 --~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 140 --VSEAE----LRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp --CCHHH----HHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHH
T ss_pred --CCHHH----HHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHH
Confidence 12222 333332211 112356899999999999998764
No 79
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.80 E-value=2.3e-19 Score=166.12 Aligned_cols=155 Identities=19% Similarity=0.165 Sum_probs=99.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++.... ...++.+ .....+...+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~------------------------------~~~~t~~----~~~~~~~~~~ 72 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTIPTIG----FNVETVEYKN 72 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE------------------------------EEEEETT----EEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc------------------------------ccCCcCc----eeEEEEEECC
Confidence 45689999999999999999999842110 0011122 1222344567
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+.....++..++... ...|+|||+||+|+...
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~------s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~- 145 (192)
T 2b6h_A 73 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVQESADELQKMLQEDELRDAVLLVFANKQDMPNA- 145 (192)
T ss_dssp EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-
Confidence 89999999999999988888999999999999999662 2333444444444322 22359999999999743
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++...+. ........++++++||++|.||.+++.
T Consensus 146 -~~~~~i~~~~~----~~~~~~~~~~~~~~SA~~g~gi~~l~~ 183 (192)
T 2b6h_A 146 -MPVSELTDKLG----LQHLRSRTWYVQATCATQGTGLYDGLD 183 (192)
T ss_dssp -CCHHHHHHHTT----GGGCSSCCEEEEECBTTTTBTHHHHHH
T ss_pred -CCHHHHHHHhC----cccccCCceEEEECcCCCcCCHHHHHH
Confidence 22233333222 111223456899999999999998764
No 80
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=8.9e-20 Score=167.90 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=108.8
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....+||+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTP-----------------------------AFVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCC-----------------------------CEEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCc-----------------------------ccCCCeeeEEEEEEEEECCE
Confidence 3456899999999999999999999532111 11122344445555556677
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||++.+...+..+++.+|++|||+|++...+ +... ..++..+... ...|+|||+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES------FNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 8899999999999999999999999999999999996522 2222 2344444442 12359999999999643
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ .+..+....+ ++++++||++|.||.+++.
T Consensus 144 ~~~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 144 RVVPTE----KGQLLAEQLG-----FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp CCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHHHHH
T ss_pred cccCHH----HHHHHHHHcC-----CeEEEEECCCCCCHHHHHH
Confidence 222222 2333333344 4789999999999998764
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.80 E-value=3.1e-19 Score=159.17 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=99.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|+|||||+++|++..... ......+.+.......+......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 53 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------------SFITTIGIDFKIKTVDINGKKVK 53 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC------------------------------------CCEEEEEEESSSCEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-----------------------------CCCCccceeEEEEEEEECCEEEE
Confidence 5789999999999999999999532110 00111222222233333344568
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e 423 (471)
+.||||||++.+...+..+++.+|++|+|+|++.+.+ +... ..++..+... ...|+++|+||+|+... ..
T Consensus 54 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~ 125 (170)
T 1g16_A 54 LQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT------FTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-VV 125 (170)
T ss_dssp EEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTC-CS
T ss_pred EEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcC-cc
Confidence 9999999999998888899999999999999996521 2222 2333333332 12359999999999532 11
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +.+..+.+..+ ++++++||++|.||.+++.
T Consensus 126 ~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 126 TA----DQGEALAKELG-----IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp CH----HHHHHHHHHHT-----CCEEECBTTTTBSHHHHHH
T ss_pred CH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHH
Confidence 12 22233333444 3789999999999998764
No 82
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=1.6e-19 Score=159.95 Aligned_cols=146 Identities=21% Similarity=0.282 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..... .....+.+.......+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 579999999999999999999532111 01112333333444455567789
Q ss_pred EEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 347 ~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
.||||||+.. +...+..+++.+|++|+|+|++.+. .....++..++...+.| +++|+||+|+..
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL--------TQADYEVAEYLRRKGKP-VILVATKVDDPK 122 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC--------CHHHHHHHHHHHHHTCC-EEEEEECCCSGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc--------cHhHHHHHHHHHhcCCC-EEEEEECccccc
Confidence 9999999887 3455667789999999999999762 23345556666666777 999999999974
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. +.+..+. ..++ .+++++||++|.|+.+++.
T Consensus 123 ~~--------~~~~~~~-~~~~----~~~~~~Sa~~~~gv~~l~~ 154 (161)
T 2dyk_A 123 HE--------LYLGPLY-GLGF----GDPIPTSSEHARGLEELLE 154 (161)
T ss_dssp GG--------GGCGGGG-GGSS----CSCEECBTTTTBSHHHHHH
T ss_pred ch--------HhHHHHH-hCCC----CCeEEEecccCCChHHHHH
Confidence 31 1122222 3333 2579999999999998764
No 83
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=1.8e-19 Score=180.54 Aligned_cols=151 Identities=20% Similarity=0.209 Sum_probs=103.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+..+|+|+|++|||||||+|+|++....+... .++.|.......+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~------------------------------~~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP------------------------------RPQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC------------------------------CCCceeEEEEEEEEeCC
Confidence 455689999999999999999999754432211 01111111111233467
Q ss_pred eEEEEEeCCCCCC--------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEe
Q 012085 344 YHVVVLDSPGHKD--------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVN 413 (471)
Q Consensus 344 ~~l~LIDTPG~e~--------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvN 413 (471)
..++||||||+.+ +......+++.+|++|||+|++.+ +.....+++..+... +.| +|+|+|
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~--------~~~~~~~i~~~l~~~~~~~p-~ilV~N 125 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVP-ILLVGN 125 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSC-EEEEEE
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCC--------CChHHHHHHHHHHhhcCCCC-EEEEEE
Confidence 8999999999876 556677889999999999999976 233455666667666 666 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+.... . .+.+.+..+ . ...+++|+||++|.|+.+++.
T Consensus 126 K~Dl~~~~--~--~~~~~~~~~---~----~~~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 126 KLDAAKYP--E--EAMKAYHEL---L----PEAEPRMLSALDERQVAELKA 165 (301)
T ss_dssp CGGGCSSH--H--HHHHHHHHT---S----TTSEEEECCTTCHHHHHHHHH
T ss_pred CcccCCch--H--HHHHHHHHh---c----CcCcEEEEeCCCCCCHHHHHH
Confidence 99997431 1 022222222 1 235789999999999876653
No 84
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=8.2e-20 Score=191.50 Aligned_cols=157 Identities=18% Similarity=0.266 Sum_probs=110.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++|||||||+|+|++..... .....|+|.+.....+...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETTE
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECCe
Confidence 46899999999999999999999643221 122355666555555666778
Q ss_pred EEEEEeCCCCCC----------chhh-hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 345 HVVVLDSPGHKD----------FVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 345 ~l~LIDTPG~e~----------f~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.++||||||+.+ |... ...+++.+|++|+|+|++.+.+ .+...++..+...+.| +|+|+|
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s--------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII--------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC--------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc--------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 899999999743 3322 2357888999999999998733 3445566667667766 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+........+++.+.+...+.... .++++++||++|.||.+++.
T Consensus 295 K~Dl~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGSCCCTTHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCCCcchHHHHHHHHHHHHhcccCC----CCCEEEEecccCCCHHHHHH
Confidence 999986544445566666666654443 36899999999999998764
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=165.22 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=100.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++..... ......+.+.......+...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 75 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRE-----------------------------NISATLGVDFQMKTLIVDGE 75 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------------------------------------CEEEEEEETTE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCc-----------------------------cCCCCccceeEEEEEEECCE
Confidence 3456899999999999999999998532100 01112233333334445555
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~ 419 (471)
...+.||||||++.+...+..+++.+|++|||+|++.+.+ +... ..++..+... ++| +|||+||+|+..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s------~~~~-~~~~~~i~~~~~~~~p-iilv~NK~Dl~~ 147 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS------FLNI-REWVDMIEDAAHETVP-IMLVGNKADIRD 147 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHC---CC-EEEEEECGGGHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH------HHHH-HHHHHHHHHhcCCCCC-EEEEEECccccc
Confidence 5789999999999999999999999999999999986622 2222 2233333332 455 999999999962
Q ss_pred CCh--hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~--e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... .......+....+....+ ++|+++||++|.||.+++.
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~~SA~~g~gv~el~~ 189 (199)
T 2p5s_A 148 TAATEGQKCVPGHFGEKLAMTYG-----ALFCETSAKDGSNIVEAVL 189 (199)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHT-----CEEEECCTTTCTTHHHHHH
T ss_pred ccccccccccCHHHHHHHHHHcC-----CeEEEeeCCCCCCHHHHHH
Confidence 100 000000122233333333 4789999999999998764
No 86
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=6.2e-19 Score=161.38 Aligned_cols=156 Identities=18% Similarity=0.124 Sum_probs=91.1
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
.+.++.++|+|+|.+|+|||||+++|++...... .....+... .....+.
T Consensus 16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~ 65 (190)
T 3con_A 16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------------------YDPTIEDSY-RKQVVID 65 (190)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSC-----------------------------CCTTCCEEE-EEEEEET
T ss_pred ccccceeEEEEECcCCCCHHHHHHHHHcCCCccc-----------------------------cCCccceEE-EEEEEEC
Confidence 3456779999999999999999999985321100 000111111 1122233
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiD 416 (471)
.....+.||||||++++...+..+++.+|++|+|+|+....+ +... ..++..+.. .++| ++||+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~~p-~ilv~nK~D 137 (190)
T 3con_A 66 GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS------FADI-NLYREQIKRVKDSDDVP-MVLVGNKCD 137 (190)
T ss_dssp TEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH------HHHH-HHHHHHHHHHHTCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH------HHHH-HHHHHHHHHHhCCCCCe-EEEEEECCc
Confidence 344679999999999999888899999999999999996521 2222 222222222 2455 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+... .... +.+..+++..+ ++++++||++|.|+.+++.
T Consensus 138 l~~~-~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 138 LPTR-TVDT----KQAHELAKSYG-----IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp CSCC-CSCH----HHHHHHHHHHT-----CCEEECCTTTCTTHHHHHH
T ss_pred CCcc-cCCH----HHHHHHHHHcC-----CeEEEEeCCCCCCHHHHHH
Confidence 9752 1122 22333444444 3789999999999998764
No 87
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.79 E-value=3.6e-19 Score=162.54 Aligned_cols=153 Identities=18% Similarity=0.219 Sum_probs=103.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... .....+.+........ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~---~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINFYLV---N 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEEEEE---T
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEEEEE---C
Confidence 356789999999999999999999643111 1112233333222222 3
Q ss_pred eEEEEEeCCC----------CCCchhhhh---hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEE
Q 012085 344 YHVVVLDSPG----------HKDFVPNMI---SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG----------~e~f~~~~~---~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIV 410 (471)
..+.|||||| ++.+...+. .....+|++++|+|+..+ ......++...+...++| +|+
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~ 138 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIP--------PQDSDLMMVEWMKSLNIP-FTI 138 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEE
Confidence 4688999999 333443333 334456999999999865 233445556667777777 999
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+||+|+.. ....+...+.+..++...+ .++++++||++|+||.+++.
T Consensus 139 v~nK~Dl~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l~~ 186 (195)
T 3pqc_A 139 VLTKMDKVK--MSERAKKLEEHRKVFSKYG----EYTIIPTSSVTGEGISELLD 186 (195)
T ss_dssp EEECGGGSC--GGGHHHHHHHHHHHHHSSC----CSCEEECCTTTCTTHHHHHH
T ss_pred EEEChhcCC--hHHHHHHHHHHHHHHhhcC----CCceEEEecCCCCCHHHHHH
Confidence 999999984 3445556666666665443 35889999999999998764
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.79 E-value=1.6e-19 Score=168.31 Aligned_cols=154 Identities=16% Similarity=0.067 Sum_probs=98.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|++|||||||+++|++..... ...+.+.+. ..+...+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~~ 69 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ------------------------------HVPTLHPTS----EELTIAGM 69 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------------------------------------CCCCCSC----EEEEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc------------------------------cCCCCCcee----EEEEECCE
Confidence 45789999999999999999998421100 000111111 12334558
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~~ 421 (471)
.+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..++.. .++| +|+|+||+|+...
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~------s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 141 (198)
T 1f6b_A 70 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE------RLLESKEELDSLMTDETIANVP-ILILGNKIDRPEA- 141 (198)
T ss_dssp EEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG------GHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC-
T ss_pred EEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH------HHHHHHHHHHHHHhCcccCCCc-EEEEEECCCcccc-
Confidence 9999999999999988889999999999999998652 233344444444432 3455 9999999999742
Q ss_pred hhhHHHHHHHHHHHHHhcC---------CC---CCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCG---------FK---DASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g---------~~---~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+++ ...+.... +. ...++++++||++|+||.+++..
T Consensus 142 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 192 (198)
T 1f6b_A 142 -ISEERL----REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRW 192 (198)
T ss_dssp -CCHHHH----HHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHH
T ss_pred -CCHHHH----HHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHH
Confidence 222333 33332211 11 13468999999999999987643
No 89
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.79 E-value=4.1e-19 Score=160.92 Aligned_cols=159 Identities=16% Similarity=0.126 Sum_probs=103.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|+|||||+++|++...... .....+... .....+....
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~ 52 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------------------YIPTVFDNY-SANVMVDGKP 52 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSS-----------------------------CCCCSCCEE-EEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------cCCccccee-EEEEEECCEE
Confidence 4568999999999999999999985321000 000111111 1122334455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+......++..+... +.| +|+|+||+|+....
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA------SFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 125 (186)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh------hHHHHHHHHHHHHHHhCCCCC-EEEEeEcccccccc
Confidence 67889999999999988888999999999999999652 1222322344444443 455 99999999997431
Q ss_pred hhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.+ ......+....++ ++++++||++|.||.+++.
T Consensus 126 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 126 -DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHH
T ss_pred -hhhhhhcccccccCCHHHHHHHHHhcCC----cEEEEecCCCccCHHHHHH
Confidence 111111 1223334444432 4789999999999998764
No 90
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=1.3e-19 Score=164.42 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=99.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|||||||+++|++..... ...+.+... ..+...+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVT------------------------------TKPTIGFNV----ETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEE------------------------------ECSSTTCCE----EEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCc------------------------------cCCcCccce----EEEEECC
Confidence 456899999999999999999998422100 001122111 1123356
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+.....++..++.. ....|+|+|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~- 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD------RMSTASKELHLMLQEEELQDAALLVFANKQDQPGA- 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT------THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-
Confidence 89999999999999998999999999999999998662 233333444444432 122359999999999753
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+++ ...+.........++++++||++|.||.+++.
T Consensus 135 -~~~~~i----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 135 -LSASEV----SKELNLVELKDRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp -CCHHHH----HHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHH
T ss_pred -CCHHHH----HHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 122222 22332222333456899999999999998764
No 91
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=2.5e-19 Score=168.90 Aligned_cols=156 Identities=22% Similarity=0.204 Sum_probs=109.1
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
.....++|+|+|.+|||||||+++|+.... ........|.+.......+..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~ 61 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNR 61 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHH-----------------------------TCEEETTTTEEEEEEEEEETT
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCC-----------------------------CCCCCCccceeEEEEEEEECC
Confidence 445678999999999999999999763110 011223456666666666666
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~ 420 (471)
....+.||||||++.+...+..+++.+|++|+|+|++.+.+ +.....++..+.... ++| +|||+||+|+...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT------YKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH------HHTHHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH------HHHHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 77889999999999999888899999999999999997622 223333333333333 445 9999999999753
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... ....+....+ ++++++||++|.||.+++.
T Consensus 135 ~~~~------~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 135 KVKA------KSIVFHRKKN-----LQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp SSCG------GGCCHHHHHT-----CEEEECBGGGTBTTTHHHH
T ss_pred cccH------HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 2111 1122222333 4789999999999998764
No 92
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=4.2e-19 Score=158.26 Aligned_cols=155 Identities=18% Similarity=0.129 Sum_probs=99.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+++|++..... ......+.+.. ..........
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE-----------------------------SYIPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS-----------------------------SCCCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-----------------------------CCCCCccccEE-EEEEECCEEE
Confidence 35789999999999999999999521110 00001111111 1222344456
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl~~~ 420 (471)
.+.||||||++++...+..+++.+|++|+|+|++.+.+ +.....++..+... .+.| +++|+||+|+...
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS------LEELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH------HHTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH------HHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 79999999999999998899999999999999996522 21222222222221 2455 9999999999743
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...... ....+....+ ++++++||++|.||.+++..
T Consensus 125 ~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 125 REVQSS----EAEALARTWK-----CAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp CCSCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHHHHHH
T ss_pred cccCHH----HHHHHHHHhC-----CeEEEecCCCCcCHHHHHHH
Confidence 221111 1222333333 47899999999999987643
No 93
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=164.72 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=103.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 74 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE-----------------------------ACKSTVGVDFKIKTVELRGKK 74 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-------------------------------------CCTTEEEEEEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------CCCCccceeEEEEEEEECCeE
Confidence 456899999999999999999998522110 011123333333334444445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|||+|++.+.+ +... ..++..+.... ..|+|||+||+|+....
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s------~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~ 147 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET------FDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDR 147 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 689999999999999999999999999999999997622 2222 23334444331 23599999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
....+ .+..+.+.+ ..++++++||++|.||.+++.
T Consensus 148 ~v~~~----~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 148 EITRQ----QGEKFAQQI----TGMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp CSCHH----HHHHHHHTS----TTCEEEECBTTTTBSHHHHHH
T ss_pred ccCHH----HHHHHHHhc----CCCeEEEEeCCCCCCHHHHHH
Confidence 21122 223333332 235889999999999998764
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.79 E-value=1.9e-19 Score=164.99 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=103.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|+|||||+++|++..... ..++.+... ..+...+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~t~~~~~----~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT------------------------------TVPTVGVNL----ETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE------------------------------ECSSTTCCE----EEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC------------------------------cCCCCceEE----EEEEECC
Confidence 356899999999999999999997421100 001112111 1233357
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+.....++..++... ...|+|+|+||+|+....
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 139 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD------RMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA 139 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT------THHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH------HHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence 89999999999999988888999999999999999762 2333444444444432 223599999999997532
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+++...+. ........++++++||++|.||.+++.
T Consensus 140 --~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 140 --SEAEIAEQLG----VSSIMNRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp --CHHHHHHHTT----GGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred --CHHHHHHHhC----hhhccCCceEEEEccCCCccCHHHHHH
Confidence 2223332222 111223356899999999999998764
No 95
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.79 E-value=4.4e-19 Score=158.56 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=94.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|+|||||+++|++....... ....+.........+......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-----------------------------EMENSEDTYERRIMVDKEEVT 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-----------------------------------------CEEEEEEEETTEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-----------------------------cCCCcCCeeeEEEEECCeEEE
Confidence 468999999999999999999853221110 001111122222334445578
Q ss_pred EEEEeCCCCCCchh-hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCCC
Q 012085 346 VVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 346 l~LIDTPG~e~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~~ 421 (471)
+.||||||++.+.. ....+++.+|++|+|+|++... .+.....++..+.... ++| +|+|+||+|+....
T Consensus 53 ~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 53 LIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRR------SFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSR 125 (169)
T ss_dssp EEEECCCCC--------CHHHHHCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGC
T ss_pred EEEEECCCccccchhhhhhhhccCCEEEEEEECCChH------HHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcc
Confidence 89999999998876 4555678899999999999652 2333444444444433 455 99999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... +.+..+....+ ++++++||++|.||.+++.
T Consensus 126 ~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 126 EVSL----EEGRHLAGTLS-----CKHIETSAALHHNTRELFE 159 (169)
T ss_dssp CSCH----HHHHHHHHHTT-----CEEEECBTTTTBSHHHHHH
T ss_pred cCCH----HHHHHHHHHcC-----CcEEEecCccCCCHHHHHH
Confidence 2222 22333444444 4789999999999998764
No 96
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=1.3e-19 Score=190.91 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=116.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+|+|++...... ....|+|.+.....+...+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 242 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV------------------------------SNVAGTTRDAVDTSFTYNQ 242 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------------------CC------CTTSEEEEETT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCcccc------------------------------CCCCCeEEEEEEEEEEECC
Confidence 3568999999999999999999996432221 1224444444334455677
Q ss_pred eEEEEEeCCC----------CCCchhh-hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 344 YHVVVLDSPG----------HKDFVPN-MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG----------~e~f~~~-~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
..++|||||| ++.|... ...+++.+|++|+|+|++.+ +..+..+++.++...+.| +|||+
T Consensus 243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCE-EEEEE
T ss_pred ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHHcCCC-EEEEE
Confidence 7999999999 5555544 34578889999999999987 456777888888887876 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
||+|+........+++.+.+...+...+ .++++++||++|+||.+++..
T Consensus 314 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 314 NKWDAVDKDESTMKEFEENIRDHFQFLD----YAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp ECGGGSCCCSSHHHHHHHHHHHHCGGGT----TSCEEECCTTTCTTGGGHHHH
T ss_pred EChhcCCCchHHHHHHHHHHHHhcccCC----CCCEEEEcCCCCcCHHHHHHH
Confidence 9999986555566777777777765443 368899999999999987643
No 97
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.79 E-value=2.1e-19 Score=193.12 Aligned_cols=139 Identities=32% Similarity=0.439 Sum_probs=108.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++..+.+..... ...... ......+....++.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~-------v~~~~~--~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGT-------IKSRKA--ARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHH-------HHTC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCccccee-------eecccc--ccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 35689999999999999999999977665532211 011000 001234455566678888877777888889
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+...
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~ 149 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDRDTR 149 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTSCCS
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCCccc
Confidence 9999999999999999999999999999999999987 456777888888888887 9999999999754
No 98
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=1.1e-20 Score=201.71 Aligned_cols=154 Identities=27% Similarity=0.346 Sum_probs=114.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
++++|+|+|++++|||||+++|++.... ....+|+|.+.....+...+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-------------------------------~~e~~GIT~~i~~~~v~~~~~ 51 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-------------------------------SGEAGGITQHIGAYHVETENG 51 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-------------------------------BTTBCCCCCCSSCCCCCTTSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------cccCCCeeEeEEEEEEEECCE
Confidence 5678999999999999999999842111 001144555444444566677
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.++|||||||++|...+..++..+|++|||+|+..+ ...++.+++..+...++| +|+|+||+|+..+..++
T Consensus 52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~ 122 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDR 122 (501)
T ss_dssp CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHHH
Confidence 899999999999999999999999999999999987 456778888888888988 99999999998643222
Q ss_pred HHHHHHHHHHHHHhcCCCC----CCccEEEEecccCCCccccCCc
Q 012085 425 FDSIKVQLGTFLRSCGFKD----ASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~----~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+ ...+...++.. ..++|+++||++|.||.+++..
T Consensus 123 v-------~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~ 160 (501)
T 1zo1_I 123 V-------KNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDA 160 (501)
T ss_dssp T-------TCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred H-------HHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence 1 11111111111 2368999999999999987654
No 99
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=3.7e-19 Score=163.23 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=99.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.|.......+ +
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~t~~~~~~~~---~ 68 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLA-----------------------------RTSSKPGKTQTLNFYII---N 68 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-----------------------------ccCCCCCceeeEEEEEE---C
Confidence 356889999999999999999999532100 01112333333333333 2
Q ss_pred eEEEEEeCCC----------CCCchhhhhhccccC---CEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEE
Q 012085 344 YHVVVLDSPG----------HKDFVPNMISGATQS---DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG----------~e~f~~~~~~~l~~a---D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIV 410 (471)
..+.|||||| ++.+...+..+++.+ |++|+|+|++.+.. ....+++.++...+.| +++
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS--------NDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--------HHHHHHHHHHHHTTCC-EEE
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC--------HHHHHHHHHHHHcCCC-EEE
Confidence 3699999999 444554455555544 99999999997622 2334455666666776 999
Q ss_pred EEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 411 AVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 411 VvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+||+|+... ..+....+.+.+.+.. ...++++++||++|.||.+++.
T Consensus 140 v~nK~Dl~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 140 IATKADKIPK--GKWDKHAKVVRQTLNI----DPEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp EEECGGGSCG--GGHHHHHHHHHHHHTC----CTTSEEEECCTTTCTTHHHHHH
T ss_pred EEECcccCCh--HHHHHHHHHHHHHHcc----cCCCceEEEEccCCCCHHHHHH
Confidence 9999999843 3344444455543321 1346899999999999998764
No 100
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=4e-19 Score=178.18 Aligned_cols=155 Identities=24% Similarity=0.271 Sum_probs=106.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
...-.|+|+|.+|||||||+|+|++....+... ..+.|.......+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~------------------------------~~~tT~~~~~~~~~~~~ 57 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP------------------------------KAGTTRMRVLGVKNIPN 57 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCCSCEEEEEEETT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCC------------------------------CCCceeeEEEEEEecCC
Confidence 345679999999999999999999754332211 1333333333334455
Q ss_pred CeEEEEEeCCCCCCch----------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHH-HHHHHhcCCCeEEEE
Q 012085 343 NYHVVVLDSPGHKDFV----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH-AQLIRSFGVDQLIVA 411 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~-l~ll~~~~vp~IIVV 411 (471)
+..++||||||+.++. ..+..++..+|++|+|+|++.+. ....... +..+...++| +|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~--------~~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGW--------RPRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBS--------CHHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCC--------CchhHHHHHHHHHhcCCC-EEEE
Confidence 8899999999986544 56677888999999999999762 2233444 6666667777 9999
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+||+|+... ..........+... ++ ...+++++||++|.||.+++.
T Consensus 129 ~NK~Dl~~~-~~~~~~~~~~l~~~---~~---~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 129 INKIDKIGP-AKNVLPLIDEIHKK---HP---ELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EECGGGSSS-GGGGHHHHHHHHHH---CT---TCCCEEECBTTTTBSHHHHHH
T ss_pred EECccCCCC-HHHHHHHHHHHHHh---cc---CCCeEEEEeCCCCCCHHHHHH
Confidence 999999732 22333333333333 32 235789999999999988653
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.78 E-value=8.2e-19 Score=164.04 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=99.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
.+.++|+|+|.+|+|||||+++|++..... ....++.......+...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~ 52 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRD--------------------------------TQTSITDSSAIYKVNNNR 52 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCC--------------------------------BCCCCSCEEEEEECSSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc--------------------------------ccCCcceeeEEEEecCCC
Confidence 456899999999999999999999532100 00111111122223332
Q ss_pred CeEEEEEeCCCCCCchh-hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiDl 417 (471)
...+.||||||++++.. .+..+++.+|++|||+|++.. . ..+.....++..++.. ....|+|||+||+|+
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 127 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--Q---REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--H---HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--C---HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence 67899999999999887 667778999999999999852 0 0122222333333332 112359999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHh-------------------cCCC-----------CCCccEEEEecccC------CCccc
Q 012085 418 VQYSKDRFDSIKVQLGTFLRS-------------------CGFK-----------DASLTWIPLSALEN------QNLVT 461 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~-------------------~g~~-----------~~~i~IIpvSAktG------~gI~e 461 (471)
... ...+.+.+.+...+.. .-.. +..++|+++||++| .||.+
T Consensus 128 ~~~--~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~ 205 (214)
T 2fh5_B 128 AMA--KSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQD 205 (214)
T ss_dssp TTC--CCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHH
T ss_pred CCc--ccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHH
Confidence 853 2234455555554441 0010 01578999999999 99998
Q ss_pred cCC
Q 012085 462 APD 464 (471)
Q Consensus 462 ~~~ 464 (471)
++.
T Consensus 206 lf~ 208 (214)
T 2fh5_B 206 LEK 208 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 102
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.78 E-value=5.6e-19 Score=165.11 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=103.3
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|.+|+|||||+++|++...... .....+. .......+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~-~~~~~~~~~~~ 76 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------------------YIPTVFD-NYSANVMVDGK 76 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC------------------------------CCCCSEE-EEEEEEECC-C
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCC-----------------------------cCCeecc-eeEEEEEECCE
Confidence 35678999999999999999999984211100 0000111 11112223444
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||++.+...+..+++.+|++|+|+|++.+. .+......++..+... +.| +|||+||+|+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 149 (204)
T 4gzl_A 77 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA------SFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHHTC
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEechhhccc
Confidence 567779999999999999999999999999999999662 2333333445555544 555 9999999999753
Q ss_pred ChhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. ..+.+ ......+.+..++ .+|+++||++|+||.+++.
T Consensus 150 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~ 197 (204)
T 4gzl_A 150 KD-TIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFD 197 (204)
T ss_dssp HH-HHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHH
T ss_pred hh-hhhhhhccccccccHHHHHHHHHhcCC----cEEEEeeCCCCCCHHHHHH
Confidence 21 11111 1233344444443 4689999999999998764
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=1.6e-19 Score=162.87 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=93.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|++|||||||+++|++..... ...+++++......+...+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYI-------------------------------GNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSC-------------------------------C-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeec-------------------------------cCCCCcceeeeEEEEEECCc
Confidence 45789999999999999999998532110 01122222222222334567
Q ss_pred EEEEEeCCCCCCchh------hhhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.+.||||||++.+.. ....+++ .+|++++|+|++.. .....++..+...+.| +|+|+||+|
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~p-~ilv~nK~D 119 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNKMD 119 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHHHHHHHHHHHTTCC-EEEEEECHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHhHHHHHHHHhcCCC-EEEEEEchH
Confidence 899999999988742 2233443 79999999999853 1122334444455666 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+....... . ....+...++ ++++++||++|.||.+++..
T Consensus 120 l~~~~~~~--~---~~~~~~~~~~-----~~~~~~SA~~~~~v~~l~~~ 158 (165)
T 2wji_A 120 LAKSLGIE--I---DVDKLEKILG-----VKVVPLSAAKKMGIEELKKA 158 (165)
T ss_dssp HHHHTTCC--C---CHHHHHHHHT-----SCEEECBGGGTBSHHHHHHH
T ss_pred hccccChh--h---HHHHHHHHhC-----CCEEEEEcCCCCCHHHHHHH
Confidence 85311100 0 1122222333 47899999999999987643
No 104
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=8.3e-19 Score=163.13 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=100.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.+.......+....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 68 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-----------------------------SFITTIGIDFKIKTVDINGKK 68 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-----------------------------SSSCCCSCCEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-----------------------------ccCCcccceEEEEEEEECCEE
Confidence 345899999999999999999998532110 001112222222233333334
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.+...+..+++.+|++|||+|++.+.+ +.... .++..+... ++ |+|||+||+|+...
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s------~~~~~-~~~~~i~~~~~~~~-piilv~nK~Dl~~~ 140 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT------FTNIK-QWFKTVNEHANDEA-QLLLVGNKSDMETR 140 (213)
T ss_dssp EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH------HHTHH-HHHHHHHHHTTTCS-EEEEEEECTTCSSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH------HHHHH-HHHHHHHHhcCCCC-CEEEEEECCCCccc
Confidence 789999999999998888899999999999999986522 22222 333333322 34 59999999999532
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... ..+..+...++ ++++++||++|.||.+++.
T Consensus 141 -~~~~----~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 141 -VVTA----DQGEALAKELG-----IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp -CSCH----HHHHHHHHHHT-----CCEEECBTTTTBSSHHHHH
T ss_pred -ccCH----HHHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 1111 22233333444 3789999999999998764
No 105
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2e-18 Score=158.79 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=103.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+....
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 65 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPE-----------------------------EYVPTVFDHYA-VSVTVGGKQ 65 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCC-----------------------------SCCCSSCCCEE-EEEESSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCcccceeE-EEEEECCEE
Confidence 356899999999999999999999531100 00001111111 112233344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+......++..+... ++| +|||+||+|+....
T Consensus 66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 138 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA------SFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLRDDP 138 (194)
T ss_dssp EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECTTSTTCH
T ss_pred EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhcccc
Confidence 78999999999999999999999999999999998652 1222332344444443 455 99999999997531
Q ss_pred hhhHH---------HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~e---------ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. ..+ ...+....+.+..++ .+|+++||++|.||.+++.
T Consensus 139 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 139 K-TLARLNDMKEKPICVEQGQKLAKEIGA----CCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp H-HHHHHTTTTCCCCCHHHHHHHHHHHTC----SCEEECCTTTCTTHHHHHH
T ss_pred c-chhhcccccCcccCHHHHHHHHHHcCC----cEEEEeeCCCCCCHHHHHH
Confidence 1 000 012233444444443 3789999999999998764
No 106
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.78 E-value=6.4e-19 Score=165.26 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=100.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|||||||+++|++.... .......+.+...........
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 58 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFE-----------------------------KNYNATVGAVNHPVTFLDDQG 58 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTT-----------------------------CEEETTTTEEEEEEEEEBTTS
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCC-----------------------------CCCCCccceeeEEEEEEeCCC
Confidence 456789999999999999999999842211 011112233332222222222
Q ss_pred -CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCC
Q 012085 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAV 418 (471)
Q Consensus 343 -~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~ 418 (471)
...+.||||||++.+......++..+|++|+|+|++.+.+ +..... ++..+.. .+.| +|||+||+|+.
T Consensus 59 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~-~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (218)
T 4djt_A 59 NVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRIT------CQNLAR-WVKEFQAVVGNEAP-IVVCANKIDIK 130 (218)
T ss_dssp CEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHH------HHTHHH-HHHHHHHHHCSSSC-EEEEEECTTCC
T ss_pred cEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHH------HHHHHH-HHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 2789999999999998888889999999999999997632 222222 2222222 2445 99999999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...... ...+..++... .++++++||++|.||.+++.
T Consensus 131 ~~~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 131 NRQKIS----KKLVMEVLKGK-----NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp ----CC----HHHHHHHTTTC-----CCEEEEEBTTTTBTTTHHHH
T ss_pred cccccC----HHHHHHHHHHc-----CCcEEEEecCCCCCHHHHHH
Confidence 431111 12233333333 35899999999999998764
No 107
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.78 E-value=1e-18 Score=163.12 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=102.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++..... ....+.+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPT-----------------------------DYIPTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCc-----------------------------cCCCccceeEE-EEEEECCEE
Confidence 456899999999999999999998532100 00011111111 112234455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.|...+..+++.+|++|||+|++.+. .+......++..+... ++| +|||+||+|+....
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 129 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA------SYENVLKKWMPELRRFAPNVP-IVLVGTKLDLRDDK 129 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhCc
Confidence 78999999999999998889999999999999998652 2323332344444443 455 99999999997431
Q ss_pred hhhHH-----HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFD-----SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~e-----ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .. .....+..+...+++ .+++++||++|+||.+++.
T Consensus 130 ~~-~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 130 GY-LADHTNVITSTQGEELRKQIGA----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp HH-HHTCSSCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHH
T ss_pred cc-cccccCCCCHHHHHHHHHHcCC----ceEEEccCCCCCCHHHHHH
Confidence 10 00 012233344444442 4789999999999998764
No 108
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=164.21 Aligned_cols=160 Identities=15% Similarity=0.117 Sum_probs=88.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++...... .....+... .....+....
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~ 81 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPES-----------------------------YTPTVFERY-MVNLQVKGKP 81 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC------------------------------------CCCCCEEE-EEEEEETTEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeE-EEEEEECCEE
Confidence 4568999999999999999999984211000 000011111 1122334445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|+|+|++.+. .+......++..+... ++| +|||+||+|+....
T Consensus 82 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN------SFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDLRKDK 154 (214)
T ss_dssp EEEEEEEC---------------CEEEEEEEEETTCHH------HHHHHHHTHHHHHHHHCSSCC-EEEEEECGGGGSCH
T ss_pred EEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhhccc
Confidence 68999999999999988888999999999999998652 2223322344444432 445 99999999997531
Q ss_pred hhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
...+.+ .+....+.+.+++ .+++++||++|.||.+++..
T Consensus 155 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el~~~ 202 (214)
T 2j1l_A 155 -SLVNKLRRNGLEPVTYHRGQEMARSVGA----VAYLECSARLHDNVHAVFQE 202 (214)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECBTTTTBSHHHHHHH
T ss_pred -hhhhhhcccccCcccHHHHHHHHHhcCC----CEEEEecCCCCCCHHHHHHH
Confidence 111110 1233444444442 37899999999999987643
No 109
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=1.4e-18 Score=161.51 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=104.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++...... .....+.... ....+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~-~~~~~~~~~ 72 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-----------------------------YVPTVFENYI-ADIEVDGKQ 72 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-----------------------------CCCSSCCCCE-EEEEETTEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc-----------------------------cCCcccceEE-EEEEECCEE
Confidence 3568999999999999999999995321100 0000111111 112233445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++... .+......++..+... +.| +|||+||+|+....
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 145 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD------SLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRQDE 145 (201)
T ss_dssp EEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGTTCH
T ss_pred EEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhhcCc
Confidence 68999999999999988889999999999999999652 2333334445555544 555 99999999998531
Q ss_pred hhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.+ .+....+....++ .+++++||++|.||.+++.
T Consensus 146 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 146 -HTRRELAKMKQEPVRSEEGRDMANRISA----FGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp -HHHHHHHTTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHH
T ss_pred -cchhhhcccccCcCCHHHHHHHHHhCCC----cEEEEeeCCCCCCHHHHHH
Confidence 111111 1233344444442 3789999999999998764
No 110
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.2e-19 Score=166.00 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=100.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++...... .....+.+.......+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-----------------------------SKSTIGVEFATRTLEIEGKR 61 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-----------------------------------CCSEEEEEEEETTEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCcccceeEEEEEEECCEE
Confidence 4568999999999999999999985321110 01112222222333333344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..+.||||||++.|...+..+++.+|++|||+|++.+.+ +.... .++..+... ++ |+|||+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s------~~~~~-~~l~~i~~~~~~~~-piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS------YENCN-HWLSELRENADDNV-AVGLIGNKSDLAHL 133 (223)
T ss_dssp EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH------HHHHH-HHHHHHHHHCC--C-EEEEEECCGGGGGG
T ss_pred EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH------HHHHH-HHHHHHHHhCCCCC-eEEEEEECcccccc
Confidence 789999999999999999999999999999999996522 22222 233333332 34 59999999999742
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+ .+..+....+ ++|+++||++|.||.+++.
T Consensus 134 ~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 134 RAVPTE----ESKTFAQENQ-----LLFTETSALNSENVDKAFE 168 (223)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECCCC-CCCHHHHHH
T ss_pred cccCHH----HHHHHHHHcC-----CEEEEEeCCCCCCHHHHHH
Confidence 211122 2333433433 5889999999999998764
No 111
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.78 E-value=9.9e-19 Score=163.84 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=101.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++..... ......+.........+...
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 72 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNP-----------------------------KFITTVGIDFREKRVVYNAQ 72 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCC-----------------------------EEEEEEEEEEEEEEEEEEC-
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCc-----------------------------CCCCceeEEEEEEEEEECCc
Confidence 3456899999999999999999998421100 00111222222222223333
Q ss_pred ----------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEE
Q 012085 343 ----------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLI 409 (471)
Q Consensus 343 ----------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~II 409 (471)
...+.||||||++.|...+..+++.+|++|||+|++... .+... ..++..+... ...|+|
T Consensus 73 ~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~------s~~~~-~~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 73 GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ------SFLNV-RNWMSQLQANAYCENPDIV 145 (217)
T ss_dssp ------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH------HHHHH-HHHHHTCCCCCTTTCCEEE
T ss_pred cccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH------HHHHH-HHHHHHHHHhcCcCCCCEE
Confidence 578999999999999999999999999999999998652 12112 2222222211 223599
Q ss_pred EEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 410 VAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 410 VVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
||+||+|+....... ...+..++...+ ++++++||++|.||.+++.
T Consensus 146 lV~NK~Dl~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 146 LIGNKADLPDQREVN----ERQARELADKYG-----IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp EEEECTTCGGGCCSC----HHHHHHHHHHTT-----CCEEEEBTTTTBTHHHHHH
T ss_pred EEEECCccccccccC----HHHHHHHHHHCC-----CcEEEEECCCCCCHHHHHH
Confidence 999999997422111 123334444444 4789999999999998764
No 112
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=161.32 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=100.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|||||||+++|++....... ....+.........+....
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-----------------------------EPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-----------------------------TTTSCTTEEEEEEEETTEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccC-----------------------------CCCcccceEEEEEEECCEE
Confidence 45689999999999999999999743221100 0001111112222344445
Q ss_pred eEEEEEeCCCCCCchh-hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVP-NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~-~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~ 419 (471)
..+.||||||++.+.. ....+++.+|++|+|+|++... .+.....++..+... .++| +|+|+||+|+..
T Consensus 72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~------s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 144 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRR------SFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 144 (195)
T ss_dssp EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHH------HHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCTT
T ss_pred EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhcCCCCCC-EEEEeechhccc
Confidence 6789999999988765 5556678899999999999652 232333333333332 2455 999999999975
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
......++ ...+....+ ++++++||++|.||.++|..
T Consensus 145 ~~~v~~~~----~~~~a~~~~-----~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 145 SREVSLEE----GRHLAGTLS-----CKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp TCCSCHHH----HHHHHHHTT-----CEEEEEBTTTTBSHHHHHHH
T ss_pred cCCcCHHH----HHHHHHHhC-----CEEEEEcCCCCCCHHHHHHH
Confidence 32222222 223333333 47899999999999987753
No 113
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.6e-18 Score=161.92 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=102.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
+..++|+|+|.+|+|||||+++|++...... .....+..... ...+....
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~-~~~~~~~~ 72 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV-----------------------------YVPTVFENYVA-DIEVDGKQ 72 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC------------------------------------CCEEEE-EEEETTEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc-----------------------------CCCcccceEEE-EEEECCEE
Confidence 4567999999999999999999995321100 00111111111 12233344
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..++..+|++|+|+|++... .+......++..+... ++| +|||+||+|+....
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 145 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD------SLENIPEKWVPEVKHFCPNVP-IILVANKKDLRSDE 145 (207)
T ss_dssp EEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH------HHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGGGCH
T ss_pred EEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhhccc
Confidence 68999999999999988889999999999999998652 2333334445555443 555 99999999997431
Q ss_pred hhhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.+ ......+....+. .+++++||++|.||.+++.
T Consensus 146 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 146 -HVRTELARMKQEPVRTDDGRAMAVRIQA----YDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp -HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHH
T ss_pred -cchhhhhhcccCCCCHHHHHHHHHhcCC----CEEEEeeCCCCCCHHHHHH
Confidence 111111 1122233333332 3789999999999998764
No 114
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-18 Score=160.84 Aligned_cols=157 Identities=19% Similarity=0.147 Sum_probs=98.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++...... .....+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE-----------------------------YDPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC-----------------------------CCTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc-----------------------------cCCCCCceE-EEEEEECCEE
Confidence 3568999999999999999999995321100 001111111 1222344455
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.||||||++. ...+..+++.+|++|+|+|++... .+..+.....++.......++| +|||+||+|+......
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v 150 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG---SFEEVLPLKNILDEIKKPKNVT-LILVGNKADLDHSRQV 150 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH---HHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGGGGCCS
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH---HHHHHHHHHHHHHHhhCCCCCc-EEEEEECccccccccc
Confidence 7899999999988 666778888999999999999652 2222212222222222223555 9999999999743222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCC-CccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~-gI~e~~~ 464 (471)
..++ +..+....+ ++++++||++|. ||.+++.
T Consensus 151 ~~~~----~~~~~~~~~-----~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 151 STEE----GEKLATELA-----CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp CHHH----HHHHHHHHT-----SEEEECCTTTCTTCHHHHHH
T ss_pred CHHH----HHHHHHHhC-----CeEEEECCCcCCcCHHHHHH
Confidence 2222 223333333 478999999999 9998764
No 115
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=6.8e-19 Score=191.54 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=112.0
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++........ +......+.. ...........+.... ...+....
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~-------ggiT~~ig~~----~~~~~~~~~~~~~~~~--~~~v~~~~ 69 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREA-------GGITQHIGAT----EIPMDVIEGICGDFLK--KFSIRETL 69 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----------CCCBTTEE----EEEHHHHHHHSCGGGG--GCGGGGTC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccC-------CceecccCeE----EEeechhhhhcccccc--cccccccc
Confidence 356789999999999999999998642211000 0000000000 0000000000000000 00011222
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC-Ch
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY-SK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~-~~ 422 (471)
..++|||||||++|...+.++++.+|++|||+|++.+ ++.++.+++.++...++| +|+|+||+|+... ..
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~ 140 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRV 140 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCe-EEEEeccccccccccc
Confidence 3699999999999999999999999999999999987 567888888888888888 9999999999742 10
Q ss_pred ------------------hhHHHHHHHHHHHHHhcCCC----------CCCccEEEEecccCCCccccCC
Q 012085 423 ------------------DRFDSIKVQLGTFLRSCGFK----------DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 ------------------e~~eei~~~L~~~l~~~g~~----------~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+.+.+....+...+.+.++. ...++++++||++|.||.+++.
T Consensus 141 ~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~ 210 (594)
T 1g7s_A 141 HEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLT 210 (594)
T ss_dssp CTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHH
T ss_pred ccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHH
Confidence 12222333344444444442 2346899999999999987643
No 116
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.77 E-value=2.3e-18 Score=158.53 Aligned_cols=155 Identities=18% Similarity=0.115 Sum_probs=98.5
Q ss_pred CCcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec
Q 012085 261 GDRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD 340 (471)
Q Consensus 261 ~~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~ 340 (471)
...++.++|+|+|.+|||||||+++|++...... ...+ +... .....+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-----------------------------~~~t-~~~~-~~~~~~~ 63 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-----------------------------ESPE-GGRF-KKEIVVD 63 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-----------------------------CCTT-CEEE-EEEEEET
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------cCCC-cceE-EEEEEEC
Confidence 3456789999999999999999999985211100 0011 1111 1223344
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNKMD 416 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNKiD 416 (471)
.....+.||||||++.+. +++.+|++|+|+|++... .+..... ++..+.. .++| +|||+||+|
T Consensus 64 ~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~------s~~~~~~-~~~~i~~~~~~~~~p-iilv~nK~D 130 (184)
T 3ihw_A 64 GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI------SFQTVYN-YFLRLCSFRNASEVP-MVLVGTQDA 130 (184)
T ss_dssp TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH------HHHHHHH-HHHHHHTTSCGGGSC-EEEEEECTT
T ss_pred CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH------HHHHHHH-HHHHHHHhcCCCCCC-EEEEEECcc
Confidence 445678899999998876 667799999999999752 2323233 3333333 2445 999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+.......+ ..+.+..+...++ .+.++++||++|.||.++|..
T Consensus 131 l~~~~~~~v--~~~~~~~~~~~~~----~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 131 ISAANPRVI--DDSRARKLSTDLK----RCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp CBTTBCCCS--CHHHHHHHHHHTT----TCEEEEEBTTTTBTHHHHHHH
T ss_pred ccccccccc--CHHHHHHHHHHcC----CCeEEEecCCCCCCHHHHHHH
Confidence 953211111 1123334444443 258899999999999987653
No 117
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.77 E-value=4.9e-19 Score=160.14 Aligned_cols=159 Identities=15% Similarity=0.114 Sum_probs=96.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++....... ..+.+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~-----------------------------~~t~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY-----------------------------VPTVFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC---------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC-----------------------------CCeeeeeEE-EEEEECCEE
Confidence 45689999999999999999999853211000 000000000 000122234
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|+|+|++.+. .+......++..+... ++| +|+|+||+|+....
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA------SYENVSKKWIPELKHYAPGVP-IVLVGTKLDLRDDK 128 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHHTCH
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCC-EEEEEechhhhcCc
Confidence 56789999999999999999999999999999998652 2222332344444432 445 99999999997432
Q ss_pred hhhHH-------HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFD-------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~e-------ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .. ...+....+....++ .+++++||++|.||.+++.
T Consensus 129 ~~-~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 129 QF-FIDHPGAVPITTVQGEELKKLIGA----PAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp HH-HHHC--CCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHH
T ss_pred cc-ccccccCCCCCHHHHHHHHHHcCC----CEEEEEECCCCCCHHHHHH
Confidence 11 00 012233344444442 4789999999999998764
No 118
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=158.58 Aligned_cols=160 Identities=17% Similarity=0.094 Sum_probs=99.5
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|+|||||+++|++.... . ....+.+.... ....+...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~---------------------------~~~~t~~~~~~-~~~~~~~~ 66 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--T---------------------------EYIPTAFDNFS-AVVSVDGR 66 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-------------------------------------CCSSEEEE-EEEEETTE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--C---------------------------CCCCcccceeE-EEEEECCE
Confidence 345689999999999999999999853200 0 00011111111 11223333
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~ 420 (471)
...+.||||||+++|...+..++..+|++|||+|++.+.+ +......++..+... ++| +|||+||+|+...
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS------FQNVSEKWVPEIRCHCPKAP-IILVGTQSDLRED 139 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCSSSC-EEEEEECGGGGGC
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH------HHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhc
Confidence 4678899999999998888889999999999999996522 222222334334332 445 9999999999742
Q ss_pred ChhhHH---------HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 421 SKDRFD---------SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 421 ~~e~~e---------ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. ... ...+....+....++ ++|+++||++|.||.+++.
T Consensus 140 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 140 VK-VLIELDKCKEKPVPEEAAKLLAEEIKA----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp HH-HHHHHHTTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCTTHHHHHH
T ss_pred hh-hhhhhcccccccCCHHHHHHHHHhcCC----cEEEEEecCCCCCHHHHHH
Confidence 10 000 011223333333332 4789999999999998764
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=2.9e-19 Score=174.89 Aligned_cols=146 Identities=22% Similarity=0.220 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+|+|++.... ....+|+|++.....+...+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-------------------------------v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-------------------------------VGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-------------------------------EEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-------------------------------ccCCCCceEEEEEEEEEECCeEE
Confidence 47999999999999999999964211 11235666666666677778899
Q ss_pred EEEeCCCCCCchh----------hhhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 347 VVLDSPGHKDFVP----------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 347 ~LIDTPG~e~f~~----------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
.||||||+..+.. ....++ ..+|++|+|+|++.. .....+...+...++| +|+|+||
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~~~l~~~l~~~~~p-vilv~NK 119 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERHLYLTSQLFELGKP-VVVALNM 119 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHHHHHHHHHTTSCSC-EEEEEEC
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhHHHHHHHHHHcCCC-EEEEEEC
Confidence 9999999887764 233444 789999999999843 2334455566667777 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+..... .......+... ++ ++++++||++|.||.+++.
T Consensus 120 ~Dl~~~~~--~~~~~~~l~~~---lg-----~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 120 MDIAEHRG--ISIDTEKLESL---LG-----CSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHHHHHTT--CEECHHHHHHH---HC-----SCEEECBGGGTBSHHHHHH
T ss_pred hhcCCcCC--cHHHHHHHHHH---cC-----CCEEEEECCCCCCHHHHHH
Confidence 99863211 11112223333 33 4889999999999998764
No 120
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.77 E-value=1.4e-20 Score=202.27 Aligned_cols=157 Identities=25% Similarity=0.353 Sum_probs=112.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC-CC
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-KN 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 343 (471)
++++|+|+|++|+|||||+++|++...... ..+|+|.+.....+.. .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-------------------------------~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-------------------------------EAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS-------------------------------SSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-------------------------------cCCceeEEEeEEEEEeCCC
Confidence 456799999999999999999985321110 1133343333333333 45
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||+.|...+..++..+|++|||+|+..+ ...++.+++..+...++| +|||+||+|+......
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPE 122 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCC
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchH
Confidence 6799999999999999999999999999999999987 457888999999999988 9999999999854333
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+......+...+..++ ..++|+++||++|.||.+++.
T Consensus 123 ~v~~~l~~~~~~~e~~~---~~~~iv~vSAktG~GI~eLle 160 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYG---GDVQAVHVSALTGENMMALAE 160 (537)
T ss_dssp SSSSHHHHTTSCCCCSS---SSEEECCCCSSSSCSSHHHHH
T ss_pred HHHHHHHhhhhhHHhcC---CCceEEEEECCCCCCchhHHH
Confidence 22111111111111111 246899999999999988653
No 121
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.77 E-value=8e-19 Score=162.11 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=75.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
...++|+|+|.+|+|||||+++|++....... ....+.+.........+...
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---------------------------~~~~t~~~~~~~~~~~~~~~~ 70 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLK---------------------------DYAMTSGVEVVVAPVTIPDTT 70 (208)
T ss_dssp EEEEEEEEC-------------------------------------------------------------CEEEECTTSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccC---------------------------CCCCccceEEEEEEEEECCcc
Confidence 45689999999999999999999853111100 00011121122222223333
Q ss_pred -CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-----CCCeEEEEEeCCC
Q 012085 343 -NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVNKMD 416 (471)
Q Consensus 343 -~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~vp~IIVVvNKiD 416 (471)
...+.||||||++.+...+..+++.+|++|||+|++.+. .+.... .++..+... ...|+|||+||+|
T Consensus 71 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~------s~~~~~-~~~~~i~~~~~~~~~~~piilv~nK~D 143 (208)
T 2yc2_C 71 VSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSME------SFESCK-AWFELLKSARPDRERPLRAVLVANKTD 143 (208)
T ss_dssp EEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHH------HHHHHH-HHHHHHHHHCSCTTSCCEEEEEEECC-
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHH------HHHHHH-HHHHHHHHhhcccccCCcEEEEEECcc
Confidence 568999999999999999999999999999999999652 122233 333333332 1235999999999
Q ss_pred CCC-CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc-CCCccccCC
Q 012085 417 AVQ-YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE-NQNLVTAPD 464 (471)
Q Consensus 417 l~~-~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt-G~gI~e~~~ 464 (471)
+.. ..... .+.+..++..++ ++++++||++ |.||.+++.
T Consensus 144 l~~~~~~v~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 144 LPPQRHQVR----LDMAQDWATTNT-----LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp ------CCC----HHHHHHHHHHTT-----CEEEECCC-------CHHHH
T ss_pred cchhhccCC----HHHHHHHHHHcC-----CEEEEeccCCCCcCHHHHHH
Confidence 975 21111 223344444444 4889999999 999998764
No 122
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.6e-18 Score=159.29 Aligned_cols=153 Identities=18% Similarity=0.108 Sum_probs=99.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|||||||+++|++..... ......+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD-----------------------------TYIPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------------TTSCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC-----------------------------cccCcccccee-EEEEECCEE
Confidence 456899999999999999999998521100 00001111111 122334445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDAV 418 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNKiDl~ 418 (471)
..+.||||||++.+...+..++..+|++|+|+|++...+ +.....+ +..+.. .++| +|||+||+|+.
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~-~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS------LEELGPI-YKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH------HHTTHHH-HHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH------HHHHHHH-HHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 689999999999999888889999999999999996522 2222222 222222 2445 99999999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ...+ .+..+...++ ++++++||++|.||.+++.
T Consensus 128 ~~~-~~~~----~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 128 QRE-VDTR----EAQAVAQEWK-----CAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp SCS-SCHH----HHHHHHHHHT-----CEEEECBTTTTBSHHHHHH
T ss_pred ccc-cCHH----HHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Confidence 521 1122 2223333333 4789999999999988764
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=2.5e-19 Score=176.74 Aligned_cols=148 Identities=22% Similarity=0.249 Sum_probs=103.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|.+|+|||||+|+|++.... ....+|+|++.....+...+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~-------------------------------v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQR-------------------------------VGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCeeEEEEEEEEEeCCC
Confidence 4688999999999999999999964311 122356666666666777788
Q ss_pred EEEEEeCCCCCCchhh----------hhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 345 HVVVLDSPGHKDFVPN----------MISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~----------~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
.+.||||||+..+... ...+ ...+|++|+|+|++.. .....+...+.+.++| +|+|+
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~~~~~~l~~~~~p-~ivv~ 119 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNLYLTLQLLELGIP-CIVAL 119 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHHHHHHHHHHHTCC-EEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHHHHHHHHHhcCCC-EEEEE
Confidence 9999999998876621 1122 2689999999999842 2334455556667887 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
||+|+..... +......+.. .++ ++++++||++|.||.+++.
T Consensus 120 NK~Dl~~~~~--~~~~~~~l~~---~lg-----~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 120 NMLDIAEKQN--IRIEIDALSA---RLG-----CPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp ECHHHHHHTT--EEECHHHHHH---HHT-----SCEEECCCGGGHHHHHHHH
T ss_pred ECccchhhhh--HHHHHHHHHH---hcC-----CCEEEEEcCCCCCHHHHHH
Confidence 9999863211 0111122222 233 4789999999999988754
No 124
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.77 E-value=1.7e-18 Score=163.34 Aligned_cols=163 Identities=14% Similarity=0.052 Sum_probs=103.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.+..++|+|+|.+|||||||+++|++..... ....+.+... .....+...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~-----------------------------~~~~t~~~~~-~~~~~~~~~ 73 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPE-----------------------------TYVPTVFENY-TACLETEEQ 73 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEE-EEEEEC--C
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CcCCeeeeeE-EEEEEECCE
Confidence 3456899999999999999999998532110 0011122222 122234455
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~ 421 (471)
...+.||||||++.|...+..+++.+|++|+|+|++...+ +......++..+... ...|+|||+||+|+....
T Consensus 74 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 147 (214)
T 3q3j_B 74 RVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET------VDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147 (214)
T ss_dssp EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH------HHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCH
T ss_pred EEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH------HHHHHHHHHHHHHHhCCCCCEEEEEEChhhccch
Confidence 6789999999999999999999999999999999997622 323233444444443 223599999999997420
Q ss_pred hhh--------HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC-ccccCCc
Q 012085 422 KDR--------FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN-LVTAPDD 465 (471)
Q Consensus 422 ~e~--------~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g-I~e~~~~ 465 (471)
... .....+....+....++ .+++++||++|.| |.++|..
T Consensus 148 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~SA~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 148 STLMELSHQKQAPISYEQGCAIAKQLGA----EIYLEGSAFTSEKSIHSIFRT 196 (214)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTC----SEEEECCTTTCHHHHHHHHHH
T ss_pred hhhhhhcccccCccCHHHHHHHHHHcCC----CEEEEeccCCCcccHHHHHHH
Confidence 000 00012233344444442 2789999999998 9887643
No 125
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=158.35 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=97.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|.+|||||||+++|++..... ....+.+.... ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFIS-----------------------------EYDPNLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----------------------------CCCTTCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCc-----------------------------ccCCCccceee-EEEEECCE
Confidence 4567899999999999999999999532100 00111222221 12234445
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-----cCCCeEEEEEeCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-----FGVDQLIVAVNKMDA 417 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-----~~vp~IIVVvNKiDl 417 (471)
...+.||||||++.+... ..+++.+|++|+|+|++... . +.....++..+... .++| +|||+||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~---s---~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ---S---FDSSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH---H---HHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH---H---HHHHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 578999999999888764 56888999999999999652 2 32233332222222 2555 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEec-ccCCCccccCCc
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSA-LENQNLVTAPDD 465 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSA-ktG~gI~e~~~~ 465 (471)
........ +.+..+....+ ++++++|| ++|.||.+++..
T Consensus 140 ~~~~~v~~----~~~~~~~~~~~-----~~~~e~Sa~~~g~gv~~lf~~ 179 (187)
T 3c5c_A 140 AQYRQVTK----AEGVALAGRFG-----CLFFEVSACLDFEHVQHVFHE 179 (187)
T ss_dssp GGGCSSCH----HHHHHHHHHHT-----CEEEECCSSSCSHHHHHHHHH
T ss_pred hhcCccCH----HHHHHHHHHcC-----CcEEEEeecCccccHHHHHHH
Confidence 64222222 22333444444 47899999 899999987643
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.76 E-value=9.7e-19 Score=177.06 Aligned_cols=155 Identities=18% Similarity=0.143 Sum_probs=104.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|||||||+++|++.... ... .|+......+...+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~------------------------------~~~----pT~~~~~~~~~~~~ 208 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV------------------------------TTI----PTIGFNVETVEYKN 208 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE------------------------------EEE----EETTEEEEEEEETT
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC------------------------------Ccc----cccceEEEEEecCc
Confidence 45689999999999999999999842110 000 12222333455678
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKiDl~~~ 420 (471)
..++||||||++.|...+..+++.+|++|||+|++... .+.....++..++... ++ |+|||+||+|+...
T Consensus 209 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~------s~~~~~~~~~~~~~~~~~~~~-piilV~NK~Dl~~~ 281 (329)
T 3o47_A 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE------RVNEAREELMRMLAEDELRDA-VLLVFANKQDLPNA 281 (329)
T ss_dssp EEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS------SHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH------HHHHHHHHHHHHHhhhccCCC-eEEEEEECccCCcc
Confidence 89999999999999999999999999999999998652 2444555555555543 44 59999999999853
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
. ..+++...+ .........++|+++||++|.||.+++..
T Consensus 282 ~--~~~~i~~~~----~~~~~~~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 282 M--NAAEITDKL----GLHSLRHRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp C--CHHHHHHHH----TCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred c--CHHHHHHHh----chhhhhcCCCEEEEEECCCCcCHHHHHHH
Confidence 2 223333332 22222334678999999999999987643
No 127
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=3.5e-18 Score=162.38 Aligned_cols=160 Identities=16% Similarity=0.138 Sum_probs=100.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|||||||+++|++.... .....+.|.......+....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-------------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-------------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCcceeeeeeeeecCC
Confidence 35689999999999999999999953211 01112334444444455567
Q ss_pred eEEEEEeCCCCC------Cc---hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEE
Q 012085 344 YHVVVLDSPGHK------DF---VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e------~f---~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVv 412 (471)
..+.||||||+. .. ...+...+..+|++|||+|++.+.+. . . .....++..+... ++| +|+|+
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~-~-~~~~~~~~~l~~~~~~~p-iilv~ 149 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGL---T-I-KEQINLFYSIKSVFSNKS-IVIGF 149 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSS---C-H-HHHHHHHHHHHTCC-CCC-EEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCc---c-h-HHHHHHHHHHHHhhcCCc-EEEEE
Confidence 899999999983 31 11223346778999999999976321 1 1 1223444445544 555 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
||+|+..... ........+..+....+ ..++++++||++|+||.+++.
T Consensus 150 nK~Dl~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 150 NKIDKCNMDS-LSIDNKLLIKQILDNVK---NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp ECGGGCC--C-CCHHHHHHHHHHHHHCC---SCEEEEECCTTTCTTHHHHHH
T ss_pred eCcccCCchh-hHHHHHHHHHHHHHhcC---CCceEEEEecccCCCHHHHHH
Confidence 9999975321 11222334445544443 225899999999999998764
No 128
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=8.7e-19 Score=171.61 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=103.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+|+|++.... ....+|+|+......+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------------------------~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-------------------------------VANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCceEEEEEEEEEECC
Confidence 35688999999999999999999963221 11235667766666677778
Q ss_pred eEEEEEeCCCCCCchhh------hhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 344 YHVVVLDSPGHKDFVPN------MISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~------~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
..+.||||||+..+... ...++ ..+|++|+|+|++.. .....+...+...++| +|+|+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~~~~~~~~l~~~~~p-vilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQSLYLLLEILEMEKK-VILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HHHHHHHHHHHTTTCC-EEEEEECH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hhHHHHHHHHHhcCCC-EEEEEECc
Confidence 89999999998877542 12333 579999999999964 1122344555566777 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+....... ..+..+.+.++ ++++++||++|.||.+++.
T Consensus 121 Dl~~~~~i~-----~~~~~l~~~lg-----~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 121 DEAKKTGMK-----IDRYELQKHLG-----IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHHTTCC-----BCHHHHHHHHC-----SCEEECCTTTCTTHHHHHH
T ss_pred CCCCccchH-----HHHHHHHHHcC-----CCEEEEEeeCCcCHHHHHH
Confidence 986321111 11222333334 4789999999999988764
No 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.76 E-value=2.6e-18 Score=155.30 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=93.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|.+|||||||+++|++..... ...+.+... .....+....
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~------------------------------~~~t~~~~~-~~~~~~~~~~ 53 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV------------------------------LEKTESEQY-KKEMLVDGQT 53 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC------------------------------CSSCSSSEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC------------------------------cCCCcceeE-EEEEEECCEE
Confidence 456899999999999999999999532110 001111111 1222334445
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHH--HHHHHHhc--CCCeEEEEEeCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE--HAQLIRSF--GVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e--~l~ll~~~--~vp~IIVVvNKiDl~~ 419 (471)
..+.||||||+++ ..+++.+|++|+|+|++.+.+ +.....+ ++..+... ...|+|||+||+|+..
T Consensus 54 ~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s------~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (178)
T 2iwr_A 54 HLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENS------FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA 122 (178)
T ss_dssp EEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHH------HHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred EEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHH------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 6789999999887 346678999999999996622 2222222 12222221 1235999999999952
Q ss_pred CC--hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 YS--KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~--~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. ....++ +..+....+ .++++++||++|.||.+++.
T Consensus 123 ~~~~~v~~~~----~~~~~~~~~----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 123 SSPRVVGDAR----ARALXADMK----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp TBCCCSCHHH----HHHHHHHHS----SEEEEEEBTTTTBTHHHHHH
T ss_pred cccCcCCHHH----HHHHHHhhc----CCeEEEEeccccCCHHHHHH
Confidence 11 111222 223333321 35889999999999998764
No 130
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.76 E-value=2e-19 Score=197.44 Aligned_cols=135 Identities=33% Similarity=0.504 Sum_probs=118.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.+||+|+||.++|||||+.+|+...+.+...... .. -...+|....|+++|+|+......+.+.++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v--------~~-----g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSV--------DK-----GTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSC--------CC-----SCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccccc--------cc-----CCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 46789999999999999999999888776543110 01 134689999999999999999999999999
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.|+|||||||.+|...+.+.++.+|++|+|||+..| ++.|++.+++++...++| .|+++||||+...+
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~ 135 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIP-TIFFINKIDQNGID 135 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCS-CEECCEECCSSSCC
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-eEEEEeccccccCC
Confidence 999999999999999999999999999999999988 788999999999999999 68889999998654
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=4.6e-18 Score=155.47 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=102.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ......+.... ....+....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 54 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------------------------NYVPTVFENYT-ASFEIDTQR 54 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEECSSCE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceeEE-EEEEECCEE
Confidence 456899999999999999999998532100 00011111111 122344456
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~ 422 (471)
..+.||||||++.|...+..+++.+|++|+|+|++.+. .+......++..+... ...|+|+|+||+|+....
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~- 127 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV- 127 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH------HHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch-
Confidence 78999999999999888888999999999999999652 2222223333334332 234599999999997421
Q ss_pred hhHHH---------HHHHHHHHHHhcCCCCCCccEEEEecc-cCCCccccCCc
Q 012085 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDD 465 (471)
Q Consensus 423 e~~ee---------i~~~L~~~l~~~g~~~~~i~IIpvSAk-tG~gI~e~~~~ 465 (471)
....+ ..+....+.+.++ .++++++||+ +|.||.+++..
T Consensus 128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~Sa~~~~~gi~~l~~~ 176 (184)
T 1m7b_A 128 STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRDIFHV 176 (184)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECBTTTBHHHHHHHHHH
T ss_pred hhHhhhhhcccCCCCHHHHHHHHHHcC----CcEEEEeeecCCCcCHHHHHHH
Confidence 10100 0123334444444 2478999999 68999987643
No 132
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.76 E-value=1.3e-18 Score=158.76 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=99.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|++|||||||+++|++.... ....++++.+.....+...
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~ 52 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYN 52 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEET
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------ccCCCCeeccceEEEEEeC
Confidence 346789999999999999999999953210 1112344444444445556
Q ss_pred CeEEEEEeCCCCCCchh------hhhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeC
Q 012085 343 NYHVVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNK 414 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNK 414 (471)
+..+.||||||+..+.. ....++. .+|++++|+|+... .....++..+...+.| +|+|+||
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~p-iilv~nK 121 (188)
T 2wjg_A 53 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERNLYLTLQLMEMGAN-LLLALNK 121 (188)
T ss_dssp TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHHHHHHHHHHTTTCC-EEEEEEC
T ss_pred CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHHHHHHHHHHhcCCC-EEEEEEh
Confidence 78999999999988742 2333443 49999999999732 2223444555556666 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+..... +. ..+..+.+.++ ++++++||++|.||.+++.
T Consensus 122 ~Dl~~~~~--~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 122 MDLAKSLG--IE---IDVDKLEKILG-----VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHHHHTT--CC---CCHHHHHHHHT-----SCEEECBGGGTBSHHHHHH
T ss_pred hhcccccc--ch---HHHHHHHHHhC-----CCeEEEEecCCCCHHHHHH
Confidence 99853211 00 11222333333 4789999999999988764
No 133
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.75 E-value=1.5e-19 Score=167.64 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=95.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++...... .....+.+.......+....
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 81 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES-----------------------------YISTIGVDFKIRTIELDGKT 81 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCH-----------------------------HHHHHCCSEEEEEEEETTEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC-----------------------------cCCcccceEEEEEEEECCEE
Confidence 4578999999999999999999984211100 01112222333333344444
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++.+...+..+++.+|++|||+|++...+ +... ..++..+.... ..|+|||+||+|+....
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 154 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES------FNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK 154 (199)
T ss_dssp EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH------HHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--C
T ss_pred EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH------HHHH-HHHHHHHHHhccCCCCEEEEEECccCCccc
Confidence 689999999999999999999999999999999997621 2222 33444444331 23599999999997432
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.... ..+..+...++ ++++++||++|.||.+++..
T Consensus 155 ~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 155 VVDY----TTAKEFADSLG-----IPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp CCCS----CC-CHHHHTTT-----CCBCCCCC---HHHHHHHHH
T ss_pred cCCH----HHHHHHHHHcC-----CeEEEEECCCCCCHHHHHHH
Confidence 1111 11222333333 46899999999999987654
No 134
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=3.9e-18 Score=170.86 Aligned_cols=163 Identities=21% Similarity=0.231 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec-CCCe
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD-SKNY 344 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~ 344 (471)
.+||+|+|.+|||||||+++|++...... ....+.|+......+. ..+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~------------------------------~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD------------------------------TRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG------------------------------GGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc------------------------------ccCcCCccceEEEEEEeCCce
Confidence 47899999999999999999985321111 1123334433333333 2478
Q ss_pred EEEEEeCCCCCCc-----hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 345 HVVVLDSPGHKDF-----VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 345 ~l~LIDTPG~e~f-----~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
.+.||||||++.+ ...+..+++.+|++|+|+|++...+. ..+.....++..+.......|+++|+||+|+..
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~---~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVL---KDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHH---HHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhH---HHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 9999999999988 55666777899999999999976332 212111222222222222235999999999984
Q ss_pred C--ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 420 Y--SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~--~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. ..+.++.....+..+...+|+ +.++++++||++ .|+.+++.
T Consensus 130 ~~~r~~~~~v~~~~~~~~~~~~g~--~~~~~~~tSa~~-~~i~e~~~ 173 (307)
T 3r7w_A 130 LDKREELFQIMMKNLSETSSEFGF--PNLIGFPTSIWD-ESLYKAWS 173 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTC--CSCEEEECCTTS-SHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCC--CCeEEEEeeecC-ChHHHHHH
Confidence 2 111122445667777777765 246899999999 77776653
No 135
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.75 E-value=1.5e-18 Score=170.30 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=102.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+.++|+|+|++|+|||||+|+|++.... ....+|+|++.....+...+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQH-------------------------------VGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEE-------------------------------EEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcc-------------------------------cCCCCCeEEEeeEEEEEECCc
Confidence 4679999999999999999999964221 112355666666666777788
Q ss_pred EEEEEeCCCCCCchh------hhhhcc--ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC-CCeEEEEEeCC
Q 012085 345 HVVVLDSPGHKDFVP------NMISGA--TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG-VDQLIVAVNKM 415 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~------~~~~~l--~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~-vp~IIVVvNKi 415 (471)
.+.||||||+..+.. ....++ ..+|++|+|+|++.. .....+...+...+ .| +|+|+||+
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~~~~~~~~~~~~~~~~p-~ilv~NK~ 119 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL----------MRNLFLTLELFEMEVKN-IILVLNKF 119 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTTCCS-EEEEEECH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc----------hhhHHHHHHHHhcCCCC-EEEEEECh
Confidence 899999999888765 233333 579999999999853 22333444455566 66 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+........ ....+.+. ++ ++++|+||++|.|+.+++.
T Consensus 120 Dl~~~~~~~~--~~~~l~~~---lg-----~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 120 DLLKKKGAKI--DIKKMRKE---LG-----VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHHHHTCCC--CHHHHHHH---HS-----SCEEECBGGGTBTHHHHHH
T ss_pred hcCcccccHH--HHHHHHHH---cC-----CcEEEEEeCCCCCHHHHHH
Confidence 9753111110 12223333 33 4789999999999987654
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=3.8e-18 Score=178.99 Aligned_cols=147 Identities=27% Similarity=0.305 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAI------------------------------VEDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCce------------------------------ecCCCCCccceeeEEEEECCeEE
Confidence 469999999999999999999643211 12236777766666677788899
Q ss_pred EEEeCCCCCC---------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 347 VVLDSPGHKD---------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 347 ~LIDTPG~e~---------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+||||||++. +...+..+++.+|++|+|+|+..+. .....++..+++..++| +|+|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~--------~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI--------TKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC--------CHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC--------CHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 9999999765 2345567889999999999998763 33445566667777777 9999999998
Q ss_pred CCCChhhHHHHHHHH-HHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQL-GTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L-~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. .. ...+ ..+ ..+++. .++++||++|.|+.++++
T Consensus 123 ~~---~~----~~~~~~~~-~~lg~~----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 123 LR---EF----EREVKPEL-YSLGFG----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp HH---HH----HHHTHHHH-GGGSSC----SCEECBTTTTBSHHHHHH
T ss_pred cc---cc----HHHHHHHH-HhcCCC----CEEEEeccCCCCHHHHHH
Confidence 52 10 1112 222 234542 359999999999987654
No 137
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.8e-18 Score=162.26 Aligned_cols=157 Identities=17% Similarity=0.110 Sum_probs=96.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+++|++....+... ....|.+.......+.....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~----------------------------~~~~g~d~~~~~i~~~~~~~ 87 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD----------------------------CEVLGEDTYERTLMVDGESA 87 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEEEEEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCc----------------------------CCccceeeEEEEEEECCeee
Confidence 45789999999999999999998532211110 00112222222223444456
Q ss_pred EEEEEeCCCCCC-chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 345 HVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 345 ~l~LIDTPG~e~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
.+.+|||+|++. +......+++.++++|+|+|++... .+.....++..+... .++| +|||+||+|+...
T Consensus 88 ~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~------sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~~~ 160 (211)
T 2g3y_A 88 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA------SFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRC 160 (211)
T ss_dssp EEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHH------HHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCGGG
T ss_pred EEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHH------HHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHhcC
Confidence 788999999876 4444455678899999999999652 232233332222221 2455 9999999999642
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.....++ ...+....+ ++|+++||++|+||.++|..
T Consensus 161 r~v~~~e----~~~~a~~~~-----~~~~e~SAk~g~~v~elf~~ 196 (211)
T 2g3y_A 161 REVSVSE----GRACAVVFD-----CKFIETSAAVQHNVKELFEG 196 (211)
T ss_dssp CCSCHHH----HHHHHHHHT-----CEEEECBTTTTBSHHHHHHH
T ss_pred ceEeHHH----HHHHHHHcC-----CEEEEEeCCCCCCHHHHHHH
Confidence 2111121 122222333 47899999999999998753
No 138
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.75 E-value=3.1e-18 Score=184.04 Aligned_cols=177 Identities=24% Similarity=0.302 Sum_probs=116.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++..+.+...... ...+ . .....++....++..|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v-------~~~~-~-~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTV-------KGRG-S-NQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCcccccee-------ecCc-c-ccceeeccchhcccCCcceeeeEEEEEECC
Confidence 456899999999999999999999765544221100 0000 0 001244556677888998877777788889
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++.+++.++...++| +|+|+||+|+.....
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~- 151 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP- 151 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-
Confidence 9999999999999999999999999999999999987 456788888888888888 999999999985432
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.++.+.+...+ +.....+.+...|++++.|+.+++.
T Consensus 152 --~~~~~~i~~~l---~~~~~~~~~pi~sa~~~~Gv~dl~~ 187 (529)
T 2h5e_A 152 --MELLDEVENEL---KIGCAPITWPIGCGKLFKGVYHLYK 187 (529)
T ss_dssp --HHHHHHHHHHH---CCEEEESEEEESCGGGCCEEEETTT
T ss_pred --HHHHHHHHHHh---CCCccceecceecccCcceeeehhh
Confidence 23445555554 2211112333479999999988754
No 139
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=5.5e-18 Score=179.77 Aligned_cols=156 Identities=18% Similarity=0.155 Sum_probs=108.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
.++.++|+|+|.+|||||||+++|++..... ... |+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~------------------------------~~~----T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT------------------------------TIP----TVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC------------------------------CCC----CSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC------------------------------cCC----ccceeEEEEEeC
Confidence 3557899999999999999999999532100 001 222233345667
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~ 419 (471)
+..+.||||||++.|...+..+++.+|++|+|+|++.+. .+.....++..++.. .++ |+|||+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~------s~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD------RIDEARQELHRIINDREMRDA-IILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG------GHHHHHHHHHHHHTSGGGTTC-EEEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh------HHHHHHHHHHHHhhhhhcCCC-cEEEEEECCCCCc
Confidence 889999999999999999999999999999999999752 244444555555443 244 4999999999975
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. ..+++. ..+.........++|+++||++|+||.+++..
T Consensus 438 ~~--~~~~~~----~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 438 AM--KPHEIQ----EKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp CC--CHHHHH----HHTTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred CC--CHHHHH----HHhchhhhhcCCeEEEEEECCCCCCHHHHHHH
Confidence 32 222222 22221122234567999999999999987643
No 140
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.74 E-value=1.2e-18 Score=158.84 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=92.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
..+|+|+|.+|+|||||+++|++...... ...++.+.+.....+...+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIV------------------------------TDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSTTCCCSCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccee------------------------------eCCCCceeceeeEEEEECCeE
Confidence 46899999999999999999996422110 011222322222233445677
Q ss_pred EEEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeC
Q 012085 346 VVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNK 414 (471)
Q Consensus 346 l~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNK 414 (471)
+.||||||++++.. ....+++.+|++|+|+|++.+.++. ...++..+... ++| +|+|+||
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~--------~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD--------PAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS--------HHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH--------HHHHHHHHHHhcccCCC-EEEEEEC
Confidence 99999999876421 1234678899999999999764321 11222333322 455 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+...... +... ...+++++||++|.||.+++.
T Consensus 125 ~Dl~~~~~~-----------~~~~-----~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 125 ADITGETLG-----------MSEV-----NGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHHCCCCE-----------EEEE-----TTEEEEECCTTTCTTHHHHHH
T ss_pred ccCCcchhh-----------hhhc-----cCCceEEEeCCCCCCHHHHHH
Confidence 998632111 0000 235789999999999998764
No 141
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=157.01 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=102.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+++|++..... ....+.+.... ....+....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-----------------------------~~~~t~~~~~~-~~~~~~~~~ 75 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPE-----------------------------NYVPTVFENYT-ASFEIDTQR 75 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS-----------------------------SCCCCSEEEEE-EEEESSSSE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CcCCccceeEE-EEEEECCEE
Confidence 456899999999999999999999532100 00011111111 122344456
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCCCCCh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~~~~~ 422 (471)
..+.||||||++.|...+..+++.+|++|||+|++... .+......++..+... ...|+|||+||+|+....
T Consensus 76 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~------s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~- 148 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE------TLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV- 148 (205)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH------HHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-
T ss_pred EEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH------HHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-
Confidence 78999999999999888888999999999999999652 2222323333434332 234599999999997421
Q ss_pred hhHHH---------HHHHHHHHHHhcCCCCCCccEEEEecc-cCCCccccCCc
Q 012085 423 DRFDS---------IKVQLGTFLRSCGFKDASLTWIPLSAL-ENQNLVTAPDD 465 (471)
Q Consensus 423 e~~ee---------i~~~L~~~l~~~g~~~~~i~IIpvSAk-tG~gI~e~~~~ 465 (471)
....+ ..+.+..+.+.++ .++|+++||+ +|.||.++|..
T Consensus 149 ~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~e~SAk~~~~gv~~lf~~ 197 (205)
T 1gwn_A 149 STLVELSNHRQTPVSYDQGANMAKQIG----AATYIECSALQSENSVRDIFHV 197 (205)
T ss_dssp HHHHHHHTTTCCCCCHHHHHHHHHHHT----CSEEEECCTTTCHHHHHHHHHH
T ss_pred hhhhhhcccccCCCCHHHHHHHHHHcC----CCEEEEeeeccCCcCHHHHHHH
Confidence 10000 0123334444443 2478999999 68999987643
No 142
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.73 E-value=1.8e-18 Score=170.99 Aligned_cols=146 Identities=18% Similarity=0.207 Sum_probs=98.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|.+|+|||||+|+|++.... ....+|+|+......+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 468999999999999999999963211 111245666555555666 778
Q ss_pred EEEEeCCCCCCchh------hhhhccc--cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 346 VVVLDSPGHKDFVP------NMISGAT--QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 346 l~LIDTPG~e~f~~------~~~~~l~--~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.||||||+..+.. ....++. .+|++|+|+|++.. .....+...+.+.++| +|+|+||+|+
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------HhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 99999999988752 2333443 59999999999843 1223344445557777 9999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... +. ..+..+...++ ++++++||++|.||.+++.
T Consensus 120 ~~~~~--~~---~~~~~l~~~lg-----~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 120 LDGQG--KK---INVDKLSYHLG-----VPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHHTT--CC---CCHHHHHHHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred CCcCC--cH---HHHHHHHHHcC-----CCEEEEEccCCCCHHHHHH
Confidence 63111 00 11122222233 4789999999999998764
No 143
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.73 E-value=1e-17 Score=155.34 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=93.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+++|++....+.... ...|.+.......+.....
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 56 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTYERTLMVDGESA 56 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEEEEEEEECCeEE
Confidence 458999999999999999999986322111100 0011222122223444445
Q ss_pred EEEEEeCCCCCC-chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh---cCCCeEEEEEeCCCCCCC
Q 012085 345 HVVVLDSPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS---FGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 345 ~l~LIDTPG~e~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~---~~vp~IIVVvNKiDl~~~ 420 (471)
.+.+|||+|+.. +......+++.+|++|+|+|++... .+.....++..+... .++| +|+|+||+|+...
T Consensus 57 ~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~------s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~ 129 (192)
T 2cjw_A 57 TIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRA------SFEKASELRIQLRRARQTEDIP-IILVGNKSDLVRX 129 (192)
T ss_dssp EEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHH------HHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTCGGG
T ss_pred EEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHH------HHHHHHHHHHHHHHhhCCCCCe-EEEEEechhhhcc
Confidence 778999999765 3334455677799999999999652 222222222222221 2455 9999999998632
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.....+ ....+....+ ++|+++||++|.||.++|..
T Consensus 130 r~v~~~----~~~~~a~~~~-----~~~~e~SA~~g~~v~~lf~~ 165 (192)
T 2cjw_A 130 REVSVS----EGRAXAVVFD-----XKFIETSAAVQHNVKELFEG 165 (192)
T ss_dssp CCSCHH----HHHHHHHHTT-----CEEEECBTTTTBSHHHHHHH
T ss_pred ccccHH----HHHHHHHHhC-----CceEEeccccCCCHHHHHHH
Confidence 111111 1122222232 47899999999999988753
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=1.1e-18 Score=182.81 Aligned_cols=146 Identities=24% Similarity=0.289 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+.+.+..+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~------------------------------v~~~~g~T~d~~~~~~~~~~~~~ 53 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWLNYDF 53 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCCccceEEEEEEECCceE
Confidence 579999999999999999999632211 22346788877777788888999
Q ss_pred EEEeCCCCC--------CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 347 VVLDSPGHK--------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 347 ~LIDTPG~e--------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.||||||++ .+...+..++..+|++|||+|+..+. .....++..+++..++| +|+|+||+|+.
T Consensus 54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~--------~~~d~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGV--------TAADEEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCS--------CHHHHHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-EEEEEECccCc
Confidence 999999986 56666777889999999999999873 34456677777777776 99999999987
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.... .+..+. .+++. .++++||++|.|+.++++
T Consensus 125 ~~~~--------~~~~~~-~lg~~----~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 125 EMRA--------NIYDFY-SLGFG----EPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp ------------CCCSSG-GGSSC----CCEECBTTTTBTHHHHHH
T ss_pred cchh--------hHHHHH-HcCCC----CeEEEeCcCCCChHHHHH
Confidence 4211 111121 33432 459999999999987654
No 145
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.73 E-value=1.1e-17 Score=185.54 Aligned_cols=148 Identities=33% Similarity=0.400 Sum_probs=104.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK- 342 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 342 (471)
.+.+||+|+||.++|||||+.+|+...+.+.... ...+ -..++|....|+++|+|+......+.+.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g--------~v~~-----~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG--------EVHD-----GAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc--------eecC-----CCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 4678999999999999999999997666443211 0011 1246888999999999998777666543
Q ss_pred ------CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 343 ------NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 343 ------~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
++.|+|||||||.+|..++.+.++.+|++|+|||+..| ++.|++..++++...++| +|+++||||
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp-~i~~iNKiD 148 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVP-RIVYVNKMD 148 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCC-EEEEEECSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCC-eEEEEcccc
Confidence 68999999999999999999999999999999999988 788999999999999999 799999999
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 012085 417 AVQYSKDRFDSIKVQLGTFL 436 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l 436 (471)
+...+ +..+.+++...+
T Consensus 149 r~~a~---~~~~~~ei~~~l 165 (709)
T 4fn5_A 149 RQGAN---FLRVVEQIKKRL 165 (709)
T ss_dssp STTCC---HHHHHHHHHHHH
T ss_pred ccCcc---HHHHHHHhhhhc
Confidence 97653 344555555554
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=9.6e-18 Score=175.93 Aligned_cols=158 Identities=23% Similarity=0.211 Sum_probs=104.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|++|||||||+|+|++....+. ...+|+|.+.....+...+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v------------------------------~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV------------------------------SPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------------------CCCC------CCEEEEETTE
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc------------------------------CCCCCCcCCceEEEEEECCE
Confidence 458999999999999999999996432211 12244554443344555677
Q ss_pred EEEEEeCCCCCCchhh------------hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 345 HVVVLDSPGHKDFVPN------------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~------------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
.+.+|||||+..+... ...+++.+|++++|+|+..+.. .+..++..++...+.+ +|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~--------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT--------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC--------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC--------HHHHHHHHHHHHcCCC-EEEEE
Confidence 8999999997543221 2346677999999999997632 2334556666667766 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
||+|+........+++...+...+...+ .++++++||++|.||.+++..
T Consensus 300 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~SA~~g~gv~~l~~~ 348 (439)
T 1mky_A 300 NKWDLVVHREKRYDEFTKLFREKLYFID----YSPLIFTSADKGWNIDRMIDA 348 (439)
T ss_dssp ECGGGSTTGGGCHHHHHHHHHHHCGGGT----TSCEEECBTTTTBSHHHHHHH
T ss_pred ECccCCCchhhHHHHHHHHHHHHhccCC----CCcEEEEECCCCCCHHHHHHH
Confidence 9999985433234555555554443333 357899999999999987643
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.72 E-value=1.2e-17 Score=167.10 Aligned_cols=152 Identities=26% Similarity=0.260 Sum_probs=102.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|+|+|++|||||||+|+|++....+.... .+.|.......+...+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~------------------------------~~tTr~~~~gi~~~~~~ 56 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK------------------------------AQTTRHRIVGIHTEGAY 56 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC------------------------------SSCCSSCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCC------------------------------CCcceeeEEEEEEECCe
Confidence 456799999999999999999997543221110 11111111122344678
Q ss_pred EEEEEeCCCCC---------CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 345 HVVVLDSPGHK---------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 345 ~l~LIDTPG~e---------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.++||||||+. .+......++..+|++++|+|+.. . .....++++.+...+.| +|+|+||+
T Consensus 57 ~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~--------~~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 57 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W--------TPDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C--------CHHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C--------CHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 89999999987 344455678889999999999974 2 23455666667666776 89999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+... ... +...+..+...+++ ..++|+||++|.|+.++++
T Consensus 127 D~~~~-~~~---~~~~l~~l~~~~~~----~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 127 DNVQE-KAD---LLPHLQFLASQMNF----LDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp TTCCC-HHH---HHHHHHHHHTTSCC----SEEEECCTTTTTTHHHHHH
T ss_pred ccCcc-HHH---HHHHHHHHHHhcCc----CceEEEECCCCCCHHHHHH
Confidence 99741 222 23334444333443 2689999999999987653
No 148
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.72 E-value=5e-18 Score=177.74 Aligned_cols=149 Identities=19% Similarity=0.225 Sum_probs=102.2
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|++|+|||||+++|++..... .+...++|++.....+...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------------------------VSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------------------------cCCCCCeeeeeEEEEEEECC
Confidence 456889999999999999999999532211 11224445444444444444
Q ss_pred e-EEEEEeCCCCCCchhh-------hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 344 Y-HVVVLDSPGHKDFVPN-------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 344 ~-~l~LIDTPG~e~f~~~-------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
. .+.||||||+.+|... +..++..+|++|||+|+. ...+...++..+...++| +|+|+||+
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~~~~p-iIvV~NK~ 150 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKEMEIP-FVVVVNKI 150 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHHTTCC-EEEECCCC
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHhcCCC-EEEEEeCc
Confidence 3 8999999999876543 456788899999999993 235667788888888887 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+...... +....+...+ +++++++||++|.|+.+++.
T Consensus 151 Dl~~~~~~------~~~~~l~~~~-----g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 151 DVLGEKAE------ELKGLYESRY-----EAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp TTTTCCCT------HHHHHSSCCT-----TCCCCCCSSCCTTSTTTHHH
T ss_pred CCCCccHH------HHHHHHHHHc-----CCCEEEEECCCCCCHHHHHH
Confidence 99864322 1222222222 35789999999999998764
No 149
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.56 E-value=4.9e-19 Score=164.61 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=100.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++....... ..+.+... .....+....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~t~~~~~-~~~~~~~~~~ 77 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY-----------------------------IPTVFDNY-SANVMVDGKP 77 (204)
Confidence 46789999999999999999999842210000 00000000 0111223345
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.||||||++++...+..+++.+|++|||+|++.+.+. ......++..+... ++| +|||+||+|+....
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~------~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~~ 150 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF------ENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 150 (204)
Confidence 6778999999999998888899999999999999876322 22222333333333 445 99999999997432
Q ss_pred hh--hH------HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 422 KD--RF------DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 422 ~e--~~------eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.. .+ ......+..+.+..++ ++++++||++|.||.+++..
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~vSA~~g~gi~~l~~~ 198 (204)
T 3th5_A 151 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFDE 198 (204)
Confidence 10 00 0011222223222221 37899999999999998765
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=4.8e-18 Score=179.05 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=102.4
Q ss_pred CcccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC
Q 012085 262 DRMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS 341 (471)
Q Consensus 262 ~~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 341 (471)
..+..++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+.+
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~ 68 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEW 68 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTT
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEE
Confidence 44667889999999999999999999632211 122467787777777888
Q ss_pred CCeEEEEEeCCC--------CCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 342 KNYHVVVLDSPG--------HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 342 ~~~~l~LIDTPG--------~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.+..++|||||| ++.+...+..++..+|++|||+|+..+ +.....++..+++..++| +|+|+|
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~N 139 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVN 139 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEE
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEE
Confidence 889999999999 556777778888999999999999876 445667788888887777 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+.... ..+..+ ..+++. .++++||++|.|+.+++.
T Consensus 140 K~D~~~~~--------~~~~e~-~~lg~~----~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 140 KLDNTEMR--------ANIYDF-YSLGFG----EPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp CC-----------------CCS-GGGSSS----SEEECCTTTCTTHHHHHH
T ss_pred Cccchhhh--------hhHHHH-HHcCCC----ceEEeecccccchHHHHH
Confidence 99986321 111112 123432 458999999999987654
No 151
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.69 E-value=5.2e-17 Score=172.48 Aligned_cols=151 Identities=18% Similarity=0.157 Sum_probs=86.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++....+ ....+|+|.+.....+...+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~------------------------------vs~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAI------------------------------VSHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcc------------------------------cCCCCCceEEEEEEEEEECCe
Confidence 34789999999999999999999642211 112345566555555666788
Q ss_pred EEEEEeCCCCCCchhh--------hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVPN--------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~--------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.++||||||+.++... ...++..+|++|||+|++.+.++.. ..+...++......|+|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-------~~~~~~~l~~l~~~piIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-------LTEIRELKAAHPAAKFLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGG-------HHHHHHHHHHCTTSEEEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-------hHHHHHHHHhcCCCCEEEEEECcC
Confidence 9999999998775432 3557888999999999998743211 223333344333345999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+...... .. +.+... ++ .+++++||++|+||.+++.
T Consensus 355 l~~~~~~--~~--~~l~~~----~~----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 355 RAANADA--LI--RAIADG----TG----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SCTTTHH--HH--HHHHHH----HT----SCEEECBTTTTBSHHHHHH
T ss_pred CCCccch--hH--HHHHhc----CC----CceEEEEECCCCCHHHHHH
Confidence 9854221 11 122221 11 3689999999999988654
No 152
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=2.8e-17 Score=185.52 Aligned_cols=172 Identities=27% Similarity=0.357 Sum_probs=113.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC--
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS-- 341 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-- 341 (471)
.+.++|+|+|++|+|||||+++|++..+.+.... .+. ...++....++.+|+|+......+.+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~~-----~~~~D~~~~E~~rgiTI~~~~~~~~~~~ 81 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------AGE-----ARFTDTRKDEQERGITIKSTAISLYSEM 81 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEEEC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CCC-----ceeecCchhhhhcceeEeeceeEEEecc
Confidence 4568999999999999999999998766554321 000 13456666777788887544433333
Q ss_pred --------------CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCe
Q 012085 342 --------------KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (471)
Q Consensus 342 --------------~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~ 407 (471)
.+..++|||||||.+|...+..+++.+|++|+|+|+..+. ..++..++..+...++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~--------~~qt~~~~~~~~~~~~p- 152 (842)
T 1n0u_A 82 SDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV--------CVQTETVLRQALGERIK- 152 (842)
T ss_dssp CHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS--------CHHHHHHHHHHHHTTCE-
T ss_pred cccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC--------CHHHHHHHHHHHHcCCC-
Confidence 2678999999999999999999999999999999999873 34555555666667777
Q ss_pred EEEEEeCCCCCCC----C----hhhHHHHHHHHHHHHHhc-----C---CCCCCccEEEEecccCCCc
Q 012085 408 LIVAVNKMDAVQY----S----KDRFDSIKVQLGTFLRSC-----G---FKDASLTWIPLSALENQNL 459 (471)
Q Consensus 408 IIVVvNKiDl~~~----~----~e~~eei~~~L~~~l~~~-----g---~~~~~i~IIpvSAktG~gI 459 (471)
+|+|+||+|+... . ...+..+.+.+...+..+ + +.+...++...||++|.++
T Consensus 153 ~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~ 220 (842)
T 1n0u_A 153 PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 220 (842)
T ss_dssp EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeeccccccc
Confidence 8999999998621 1 223455555555555431 1 3332346788999998664
No 153
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.69 E-value=6.8e-17 Score=178.83 Aligned_cols=167 Identities=30% Similarity=0.422 Sum_probs=111.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++..+.+.... .... ....++....++.+++|+......+.+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g--------~v~~-----~~~~~D~~~~e~~~giTi~~~~~~~~~~~ 74 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIG--------ETHE-----GASQMDWMEQEQDRGITITSAATTAAWEG 74 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccc--------cccC-----CceecccchhhhhcCceEeeeeEEEEECC
Confidence 4568999999999999999999997655432211 0000 01344555667778888877777777888
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|+....
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999987 345666677777778887 89999999998542
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVT 461 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e 461 (471)
+..+.+.++..+... ....++|+|+ |.|+..
T Consensus 144 -~~~~~~~l~~~l~~~----~~~~~ipisa--~~~~~~ 174 (693)
T 2xex_A 144 -FEYSVSTLHDRLQAN----AAPIQLPIGA--EDEFEA 174 (693)
T ss_dssp -HHHHHHHHHHHHCCC----EEESEEEECC--GGGCCE
T ss_pred -hHHHHHHHHHHhCCC----ceeEEeeccc--CCCcce
Confidence 445556666655221 1235789998 555543
No 154
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.69 E-value=8.1e-17 Score=178.17 Aligned_cols=162 Identities=29% Similarity=0.397 Sum_probs=107.2
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
..+.++|+|+|++|+|||||+++|+...+.+.... .... ....++....++..++|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g--------~v~~-----~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIG--------EVHE-----GAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccc--------eecC-----CceeccCchhhhhcccccccceEEEEEC
Confidence 35678999999999999999999996554432211 0000 0234566677778888888777778888
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
+..++|||||||.+|...+..+++.+|++|+|+|+..+ ...++...+..+...++| +|+|+||+|+....
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g--------~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVP-RIAFANKMDKTGAD- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCC--------cchhhHHHHHHHHHcCCC-EEEEEECCCcccCC-
Confidence 99999999999999999999999999999999999987 345666667777778888 89999999998542
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCccEEEEec
Q 012085 423 DRFDSIKVQLGTFLRSCGFKDASLTWIPLSA 453 (471)
Q Consensus 423 e~~eei~~~L~~~l~~~g~~~~~i~IIpvSA 453 (471)
+..+.+.+...+ +.. ....++|+|+
T Consensus 146 --~~~~~~~l~~~l---~~~-~~~~~~Pi~~ 170 (691)
T 1dar_A 146 --LWLVIRTMQERL---GAR-PVVMQLPIGR 170 (691)
T ss_dssp --HHHHHHHHHHTT---CCC-EEECEEEESC
T ss_pred --HHHHHHHHHHHh---CCC-ccceeccccC
Confidence 445555665554 221 1234688887
No 155
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=3.8e-17 Score=149.74 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=93.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe---cCC
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF---DSK 342 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~---~~~ 342 (471)
.++|+|+|.+|||||||+++|++....... ....+.|+.+......+ ...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~---------------------------~~~~t~g~~~~~~~~~~~~~~~~ 54 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG---------------------------MQSATVGIDVKDWPIQIRDKRKR 54 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC--------------------------------------CSEEEEEEEC--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC---------------------------CcceeccEEeEEeeeccccCCCC
Confidence 368999999999999999999853111000 00011122211111111 124
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCCh
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~ 422 (471)
...+.||||||++.|......+++.++++++|+|.+.+. ..+.....++..+.......|+|+|+||+|+...
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-- 127 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ-----AEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE-- 127 (184)
T ss_dssp -CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH-----HHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--
T ss_pred ceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch-----hHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--
Confidence 568999999999888877777888899999999998651 1122233333333333323459999999999732
Q ss_pred hhHHHH-HHHHHHHHHhcCCCCCCccEEEEecccCC-CccccCC
Q 012085 423 DRFDSI-KVQLGTFLRSCGFKDASLTWIPLSALENQ-NLVTAPD 464 (471)
Q Consensus 423 e~~eei-~~~L~~~l~~~g~~~~~i~IIpvSAktG~-gI~e~~~ 464 (471)
...... ......+....++.. ...++++||++|. |+.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 128 KQRKACMSKITKELLNKRGFPA-IRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp HHHHHHHHHHHHHTTTCTTSCE-EEEEEECCTTSCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCcc-hhheEEEecccCchhHHHHHH
Confidence 222111 122223332333310 1138999999996 8877653
No 156
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.68 E-value=6.4e-18 Score=153.82 Aligned_cols=152 Identities=23% Similarity=0.302 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|+|||||+++|++..... ...++++.......+. .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~t~~~~~~~~~----~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRR-------------------------------GKRPGVTRKIIEIEWK----NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSS-------------------------------SSSTTCTTSCEEEEET----TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCcc-------------------------------CCCCCccceeEEEecC----CE
Confidence 579999999999999999999532110 0112222222222222 68
Q ss_pred EEEeCCCC-----------CCchhhhhhc----cccCCEEEEEEeCCCCcccccc-chh-----hhHHHHHHHHHHhcCC
Q 012085 347 VVLDSPGH-----------KDFVPNMISG----ATQSDAAILVIDASVGSFEVGM-NTA-----KGLTREHAQLIRSFGV 405 (471)
Q Consensus 347 ~LIDTPG~-----------e~f~~~~~~~----l~~aD~vIlVVDas~g~~e~~~-~~l-----~~~~~e~l~ll~~~~v 405 (471)
.||||||+ +.+...+..+ ...++++++|+|.... ... ..+ .....+....+...++
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAA---PEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHH---HHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhh---hhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 99999993 4444444444 4446677777776532 100 000 0112234445555566
Q ss_pred CeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCC--CCccEEEEecccCCCccccCC
Q 012085 406 DQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 406 p~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~--~~i~IIpvSAktG~gI~e~~~ 464 (471)
| +++|+||+|+.... ...+..+...++..- ..+.++++||++|+||.+++.
T Consensus 124 p-iilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 124 P-TIVAVNKLDKIKNV-------QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp C-EEEEEECGGGCSCH-------HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred c-eEEEeehHhccCcH-------HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 6 99999999997532 122333333444310 023689999999999998764
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.68 E-value=2.3e-17 Score=160.00 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=97.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|||||||+++|++......... ..++|.......+...+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~-----------------------------~~~~t~~~~~~~~~~~~ 70 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLG-----------------------------SQTLTKTCSKSQGSWGN 70 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT-----------------------------SCCCCCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC-----------------------------CCceeeeeEEEEEEeCC
Confidence 4568999999999999999999996443221100 01123333333345567
Q ss_pred eEEEEEeCCCCCCch-----------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-----CCCe
Q 012085 344 YHVVVLDSPGHKDFV-----------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQ 407 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~-----------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~vp~ 407 (471)
..+.||||||+.++. ..+..+++.+|++|||+|+... .....+++..+... ..|
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRY---------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCC---------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCC---------CHHHHHHHHHHHHHhCchhhcc-
Confidence 899999999976642 2233467889999999999841 23344444444443 445
Q ss_pred EEEEEe-CCCCCCCChhhHHH-HH----HHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 408 LIVAVN-KMDAVQYSKDRFDS-IK----VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 408 IIVVvN-KiDl~~~~~e~~ee-i~----~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+|+| |+|+.... +.. +. ..+..++..++.....+..+++||++|.|+.+++.
T Consensus 141 ~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGS---LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCcc---HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHH
Confidence 566666 99998432 222 11 23444555544211000118999999999988654
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=2.1e-16 Score=155.34 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=88.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (471)
..++|+|+|.+|+|||||+|+|++......... .......+++++......+...+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------------------~~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------------------GPSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------------------CcccccCCceEEEEEEEEEecCCe
Confidence 468999999999999999999985433221100 00000112222333333333333
Q ss_pred -eEEEEEeCCCCCCc-------hhhh-------hhccc-------------cCCEEEEEEeCCCCccccccchhhhHHHH
Q 012085 344 -YHVVVLDSPGHKDF-------VPNM-------ISGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 344 -~~l~LIDTPG~e~f-------~~~~-------~~~l~-------------~aD~vIlVVDas~g~~e~~~~~l~~~~~e 395 (471)
..++||||||+.++ .... ..++. .+|++||+++..... +.....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-------~~~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-------LKPLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-------CCHHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-------CCHHHHH
Confidence 58999999997432 1111 12222 378999999776421 3455566
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
++..+.. ++| +|+|+||+|+. ....+...++.+...+...++ +++++||++++|+.+++
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~--~~~e~~~~~~~i~~~l~~~~i-----~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTL--TPEECQQFKKQIMKEIQEHKI-----KIYEFPETDDEEENKLV 195 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGS--CHHHHHHHHHHHHHHHHHTTC-----CCCCC-----------C
T ss_pred HHHHHhc-cCC-EEEEEeccCCC--CHHHHHHHHHHHHHHHHHcCC-----eEEcCCCCCChhHHHHH
Confidence 6666665 666 99999999997 345556666677777766553 56999999999998754
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=2e-16 Score=157.13 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=101.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|+|||||+++|++...... ...+.+... .....+.....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~ 203 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE-----------------------------YIPTVFDNY-SANVMVDGKPV 203 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS-----------------------------CCCCSEEEE-EEEEEETTEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc-----------------------------cCCccccee-EEEEEECCEEE
Confidence 357899999999999999999984211000 000111111 11122333445
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCCh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~ 422 (471)
.+.||||||++.+...+..+++.+|++|+|+|++.+.+ +......++..+... ++| +|+|+||+|+....
T Consensus 204 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~- 275 (332)
T 2wkq_A 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS------FHHVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK- 275 (332)
T ss_dssp EEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH------HHHHHHTHHHHHHHHCTTSC-EEEEEECHHHHTCH-
T ss_pred EEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH------HHHHHHHHHHHHHhhCCCCc-EEEEEEchhccccc-
Confidence 67799999999999999999999999999999996522 222222334444433 455 99999999996431
Q ss_pred hhHHHH---------HHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 423 DRFDSI---------KVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 423 e~~eei---------~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...+.+ ......+....++ .+|+++||++|.||.+++.
T Consensus 276 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 276 DTIEKLKEKKLTPITYPQGLAMAKEIGA----VKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHTTC----SEEEECCTTTCTTHHHHHH
T ss_pred chhhhccccccccccHHHHHHHHHHcCC----cEEEEecCCCCcCHHHHHH
Confidence 111110 1233344444432 3789999999999998764
No 160
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.66 E-value=2.3e-16 Score=173.87 Aligned_cols=132 Identities=28% Similarity=0.382 Sum_probs=104.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|+|+|++|+|||||+++|++..+.+....-. ..+ ...++....++..++++......+.+...
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-------~~g------~~~~d~~~~e~~~giti~~~~~~~~~~~~ 74 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-------EEG------TTTTDYTPEAKLHRTTVRTGVAPLLFRGH 74 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-------GGT------CCSSCCSHHHHHTTSCCSCEEEEEEETTE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-------cCC------cccccCCHHHHhcCCeEEecceEEeeCCE
Confidence 45789999999999999999999765543221100 011 12344445566777887767777777889
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.++|||||||.+|...+..+++.+|++|+|+|+..+ +..++.+++..+...++| +|+|+||+|+.
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~ 139 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLP-RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCC-EEEEEECGGGC
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCC-EEEEecCCchh
Confidence 999999999999999999999999999999999877 456778888888888888 89999999997
No 161
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=8.4e-17 Score=150.76 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=87.5
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|++|+|||||+++|++....... ....+.++ .....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~----------------------------~~~~~~~~-------~~~~~ 54 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------------------------VSQEPLSA-------ADYDG 54 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBC----------------------------CCSSCEEE-------TTGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCee----------------------------eecCceEE-------EEeeC
Confidence 45678999999999999999999953211100 00001111 11245
Q ss_pred eEEEEEeCCCCCCchhhhhhcccc----CCEEEEEEeCC-CCccccccchhhhHHHHHHHHHHh------cCCCeEEEEE
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~----aD~vIlVVDas-~g~~e~~~~~l~~~~~e~l~ll~~------~~vp~IIVVv 412 (471)
..+.||||||++.+...+..+++. +|++|||+|++ .. .. +.....++..++.. .++| +|+|+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 127 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---KK---LTTTAEFLVDILSITESSCENGID-ILIAC 127 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---TC---CHHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh---HH---HHHHHHHHHHHHhcccccccCCCC-EEEEE
Confidence 679999999999998888777776 89999999998 33 12 33333444444432 3555 99999
Q ss_pred eCCCCCCCCh--hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCC
Q 012085 413 NKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQN 458 (471)
Q Consensus 413 NKiDl~~~~~--e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~g 458 (471)
||+|+..... ...+.+.+.+..+....+ +.|+++||++|.+
T Consensus 128 nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 128 NKSELFTARPPSKIKDALESEIQKVIERRK-----KSLNEVERKINEE 170 (218)
T ss_dssp ECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-----HHHHC--------
T ss_pred EchHhcccCCHHHHHHHHHHHHHHHHHHHh-----ccccccccccccc
Confidence 9999985432 112222333444433322 4678999998875
No 162
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=6.1e-17 Score=172.18 Aligned_cols=145 Identities=26% Similarity=0.292 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
++|+|+|.+|||||||+|+|++....+.. ..+++|.+.....+...+..+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs------------------------------~~~gTT~d~~~~~i~~~g~~~ 293 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT------------------------------DIPGTTRDVISEEIVIRGILF 293 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC------------------------------CSSCCSSCSCCEEEEETTEEE
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC------------------------------CCCCeeeeeEEEEEecCCeEE
Confidence 78999999999999999999965322211 113333333333344567889
Q ss_pred EEEeCCCCC-Cch--------hhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 347 VVLDSPGHK-DFV--------PNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 347 ~LIDTPG~e-~f~--------~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+||||||+. .+. ..+..++..+|++|+|+|++.+.++ ...++++.+ .+.| +|+|+||+|+
T Consensus 294 ~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~--------~~~~il~~l--~~~p-iivV~NK~DL 362 (482)
T 1xzp_A 294 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE--------EDRKILERI--KNKR-YLVVINKVDV 362 (482)
T ss_dssp EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCH--------HHHHHHHHH--TTSS-EEEEEEECSS
T ss_pred EEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCH--------HHHHHHHHh--cCCC-EEEEEECccc
Confidence 999999988 543 2346678899999999999876321 222333333 2445 9999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ...++ +..++ + ..++++++||++|+||.+++.
T Consensus 363 ~~~--~~~~~----~~~~~---~---~~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 363 VEK--INEEE----IKNKL---G---TDRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp CCC--CCHHH----HHHHH---T---CSTTEEEEEGGGTCCHHHHHH
T ss_pred ccc--cCHHH----HHHHh---c---CCCcEEEEECCCCCCHHHHHH
Confidence 742 11222 22222 2 125789999999999998754
No 163
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=2.2e-16 Score=153.27 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|||||||+|+|++....+.... ..++|.......+...
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~-----------------------------~~~~T~~~~~~~~~~~ 68 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLG-----------------------------ATSVTRACTTGSRRWD 68 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCC-----------------------------CCCccccEEEEEEEEC
Confidence 34678999999999999999999997543322110 1123333333345567
Q ss_pred CeEEEEEeCCCC--------CCchhhhhhcc----ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc------C
Q 012085 343 NYHVVVLDSPGH--------KDFVPNMISGA----TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF------G 404 (471)
Q Consensus 343 ~~~l~LIDTPG~--------e~f~~~~~~~l----~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~------~ 404 (471)
+..++||||||+ +.+...+...+ +.+|++|+|+|+++. .....+.++.+... +
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~---------~~~~~~~~~~l~~~~~~~~~~ 139 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRF---------TAQDQQAVRQVRDMFGEDVLK 139 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBC---------CHHHHHHHHHHHHHHCGGGGG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC---------CHHHHHHHHHHHHHhChhhhc
Confidence 889999999997 55555555554 889999999999742 22334444444432 3
Q ss_pred CCeEEEEEeCCCCCCCChhhHHHHH-----HHHHHHHHhcCCCCCCccEEEEeccc-----CCCccccC
Q 012085 405 VDQLIVAVNKMDAVQYSKDRFDSIK-----VQLGTFLRSCGFKDASLTWIPLSALE-----NQNLVTAP 463 (471)
Q Consensus 405 vp~IIVVvNKiDl~~~~~e~~eei~-----~~L~~~l~~~g~~~~~i~IIpvSAkt-----G~gI~e~~ 463 (471)
. ++|||+||+|+.... +++.. ..+..+++.++. .++++++.. +.||.+++
T Consensus 140 ~-~iilv~nK~Dl~~~~---~~~~l~~~~~~~l~~l~~~~g~-----~~~~~~~~~~~~~~~~~v~~Ll 199 (247)
T 3lxw_A 140 W-MVIVFTRKEDLAGGS---LHDYVSNTENRALRELVAECGG-----RVCAFDNRATGREQEAQVEQLL 199 (247)
T ss_dssp G-EEEEEECGGGGTTCC---HHHHHHHCCCHHHHHHHHHTTT-----CEEECCTTCCHHHHHHHHHHHH
T ss_pred c-EEEEEEchHhcCCCC---HHHHHhhcccHHHHHHHHHcCC-----eEEEEeCCCCccccHHHHHHHH
Confidence 4 499999999997532 22222 346777777764 345555443 56766553
No 164
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.65 E-value=5.8e-16 Score=171.65 Aligned_cols=148 Identities=30% Similarity=0.379 Sum_probs=113.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|+.|+|||||+++|+...+.+.... .... + ...++....++.+|+|+......+.+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g--------~v~~-g----~~~~D~~~~E~~rgiTi~~~~~~~~~~~ 74 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG--------EVHD-G----AATMDWMEQEQERGITITSAATTAFWSG 74 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCccccc--------ccCC-C----ceeecChhhHHhcCceeeeceEEEEECC
Confidence 4568999999999999999999997655433211 0000 1 2455666777888999877777676665
Q ss_pred -------eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 344 -------YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 344 -------~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
+.++|||||||.+|...+..+++.+|++|+|+|+..+ ...++..++..+...++| +|+|+||+|
T Consensus 75 ~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 75 MAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred ccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 8999999999999999999999999999999999987 445777777888888888 899999999
Q ss_pred CCCCChhhHHHHHHHHHHHH
Q 012085 417 AVQYSKDRFDSIKVQLGTFL 436 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l 436 (471)
+.... ++++.+.+...+
T Consensus 146 ~~~~~---~~~~~~~l~~~l 162 (704)
T 2rdo_7 146 RMGAN---FLKVVNQIKTRL 162 (704)
T ss_pred ccccc---HHHHHHHHHHHh
Confidence 97543 344555555544
No 165
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.64 E-value=2.1e-16 Score=160.08 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHVV 347 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l~ 347 (471)
||+|+|..|||||||++++.+...... ....+.|+......+. ....++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~------------------------------~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD------------------------------TLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG------------------------------GTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc------------------------------cceecCeeeeeeEEEc-cEEEEE
Confidence 589999999999999998874211000 0001112111111122 347899
Q ss_pred EEeCCCCCCchh---hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCCCCCCCCh
Q 012085 348 VLDSPGHKDFVP---NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKMDAVQYSK 422 (471)
Q Consensus 348 LIDTPG~e~f~~---~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKiDl~~~~~ 422 (471)
|||||||++|.. .+..+++.++++|||+|++.. ++.. .....+++..+.. -++ |+++|+||+|+.....
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~----~~~l~~~l~~~~~~~~~i-pillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINA----ITNLAMIIEYAYKVNPSI-NIEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHH----HHHHHHHHHHHHHHCTTC-EEEEECCCCCSSCSHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHH----HHHHHHHHHHHhhcCCCC-cEEEEEECcccCchhh
Confidence 999999999964 357789999999999999975 2111 1112222332222 234 4999999999984321
Q ss_pred --hhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 423 --DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 423 --e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
+..+.+.....+.+.+.++...++.|+++||++ .||.++|..
T Consensus 124 R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~ 167 (331)
T 3r7w_B 124 KVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSR 167 (331)
T ss_dssp HHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHH
T ss_pred hhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHH
Confidence 112334444433443333222468999999998 589888754
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.64 E-value=1.4e-15 Score=140.99 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=99.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeE
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYH 345 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 345 (471)
.++|+|+|++|||||||+++|++...... .....|.........+......
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~i~~~g~~~~ 55 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFATRSIQVDGKTIK 55 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEEEEEEETTEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 57899999999999999999996321110 0111222333333344444567
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCChh
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~~e 423 (471)
+.||||||++.+......++..++++|+|+|+....+ +... ..++..+... ...++++|+||+|+......
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~ 128 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT------YENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV 128 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccCc
Confidence 8899999999888777778888999999999986522 1111 2222223221 22359999999999643222
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..+ ..+.++... .+.++++||+++.|+.+++.
T Consensus 129 ~~~----~a~~l~~~~-----~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 129 PTD----EARAFAEKN-----NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp CHH----HHHHHHHHT-----TCEEEECCTTTCTTHHHHHH
T ss_pred CHH----HHHHHHHHc-----CCeEEEEeCCCCCCHHHHHH
Confidence 222 233344333 35789999999999988754
No 167
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.63 E-value=2.5e-16 Score=166.68 Aligned_cols=146 Identities=25% Similarity=0.228 Sum_probs=87.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++....+... .+++|.+.....+...+.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~------------------------------~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD------------------------------LPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC------------------------------CTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC------------------------------CCCeeEEEEEEEEEECCE
Confidence 34789999999999999999999754322111 122222221112334677
Q ss_pred EEEEEeCCCCCCchh--------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 345 HVVVLDSPGHKDFVP--------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~--------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.++||||||+.++.. ....++..+|++|+|+|++.+. .....+++..+.. . |+|+|+||+|
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~--------~~~~~~i~~~l~~--~-piivV~NK~D 341 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGW--------TTGDQEIYEQVKH--R-PLILVMNKID 341 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCS--------CHHHHHHHHHHTT--S-CEEEEEECTT
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCC--------CHHHHHHHHhccC--C-cEEEEEECCC
Confidence 899999999866432 2345678899999999999762 2333444444432 3 5999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 417 AVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+...... . .+..+. ...+++++||++|.||.+++.
T Consensus 342 l~~~~~~--~--------~~~~~~---~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 342 LVEKQLI--T--------SLEYPE---NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp SSCGGGS--T--------TCCCCT---TCCCEEEEBTTTTBSHHHHHH
T ss_pred CCcchhh--H--------HHHHhc---cCCcEEEEECCCCCCHHHHHH
Confidence 9753211 1 111111 235789999999999987653
No 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.62 E-value=3.3e-16 Score=168.12 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=96.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEE------
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAV------ 336 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~------ 336 (471)
..+.+||+|+|.+|||||||+++|++..... ....+.|.++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~-----------------------------~~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDP-----------------------------KESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEeccccccc
Confidence 3567899999999999999999999532110 00011111111100
Q ss_pred E--EecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEE
Q 012085 337 A--YFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAV 412 (471)
Q Consensus 337 ~--~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVv 412 (471)
. ........+.||||||++.+......+++.+|++|+|+|++.. .....++..+...+ .| +|||+
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~~~~l~~~~~~~p-vilV~ 157 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYWLRHIEKYGGKSP-VIVVM 157 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHHHHHHHHHSSSCC-EEEEE
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHHHHHHHHhCCCCC-EEEEE
Confidence 0 0122367899999999999988888888999999999999843 22344455555543 55 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
||+|+........ +.+...+...+ ++++++||++|.||.+++.
T Consensus 158 NK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 158 NKIDENPSYNIEQ----KKINERFPAIE-----NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CCTTTCTTCCCCH----HHHHHHCGGGT-----TCEEECCC-----CTTHHH
T ss_pred ECCCcccccccCH----HHHHHHHHhcC-----CceEEEecCcccCHHHHHH
Confidence 9999975332222 33444444444 3689999999999998764
No 169
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=2.4e-15 Score=153.49 Aligned_cols=153 Identities=22% Similarity=0.312 Sum_probs=94.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
..++|+|+|.+|||||||+|+|++...... ...+.|.......+...+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIA-------------------------------SYPFTTRGINVGQFEDGYF 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEE-------------------------------CCTTCSSCEEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccC-------------------------------CCCCeeeceeEEEEEecCc
Confidence 457899999999999999999986431110 0112222222333444577
Q ss_pred EEEEEeCCCCCCchh---------hhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeC
Q 012085 345 HVVVLDSPGHKDFVP---------NMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNK 414 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~---------~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNK 414 (471)
.+.||||||+..+.. ........+|++|+|+|++.+. .+ .+..+..++..+.... +.| +|+|+||
T Consensus 215 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~-~~~~~~~~~~~i~~~~~~~p-iilV~NK 289 (357)
T 2e87_A 215 RYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GF-PLEEQIHLFEEVHGEFKDLP-FLVVINK 289 (357)
T ss_dssp EEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SS-CHHHHHHHHHHHHHHTTTSC-EEEEECC
T ss_pred eEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cC-CHHHHHHHHHHHHHhcCCCC-EEEEEEC
Confidence 899999999765321 1122334699999999988641 11 1223333333333333 555 9999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 415 MDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 415 iDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+... ..++ .+..++...+ ++++++||++|+||.+++.
T Consensus 290 ~Dl~~~--~~~~----~~~~~~~~~~-----~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 290 IDVADE--ENIK----RLEKFVKEKG-----LNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp TTTCCH--HHHH----HHHHHHHHTT-----CCCEECBTTTTBTHHHHHH
T ss_pred cccCCh--HHHH----HHHHHHHhcC-----CCeEEEeCCCCcCHHHHHH
Confidence 999742 2222 2233333333 4679999999999998754
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.61 E-value=9.8e-17 Score=163.62 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-eE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-YH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-~~ 345 (471)
.+|+|+|.+||||||||++|++....+.. .+..|.......+...+ ..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~-------------------------------~~ftTl~p~~g~v~~~~~~~ 207 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIAD-------------------------------YHFTTLVPNLGMVETDDGRS 207 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESS-------------------------------TTSSCCCCCEEEEECSSSCE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCcccc-------------------------------CCccccCceEEEEEeCCCce
Confidence 46999999999999999999853221110 01111111112233343 78
Q ss_pred EEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-----CCCeEEEEEe
Q 012085 346 VVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-----GVDQLIVAVN 413 (471)
Q Consensus 346 l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-----~vp~IIVVvN 413 (471)
++||||||+.. +...++..+..++++|+|+|++....... +. ....+...+..+ .+| +|||+|
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~---~~-~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP---YD-DYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCH---HH-HHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccCh---HH-HHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 99999999532 44556666777999999999985210111 22 222333334432 444 999999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+|+... . +.+..+.+.+.. .++++++||++++||.+++.
T Consensus 283 K~Dl~~~-~-------e~~~~l~~~l~~---~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMPEA-A-------ENLEAFKEKLTD---DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTSTTH-H-------HHHHHHHHHCCS---CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCCCC-H-------HHHHHHHHHhhc---CCCEEEEECCCCcCHHHHHH
Confidence 9999742 1 122223333331 14789999999999988654
No 171
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=146.60 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=88.1
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK 342 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 342 (471)
....++|+|+|.+|+|||||+|+|++....... ....++|.......+...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 76 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG-----------------------------TAAKSITKKCEKRSSSWK 76 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC-----------------------------CCCCceeeeEEEEEEEeC
Confidence 345689999999999999999999964331111 011133333334445567
Q ss_pred CeEEEEEeCCCCC-----------CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCCCeEEE
Q 012085 343 NYHVVVLDSPGHK-----------DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGVDQLIV 410 (471)
Q Consensus 343 ~~~l~LIDTPG~e-----------~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~vp~IIV 410 (471)
+..++||||||+. .+...+...++.+|++|+|+|+++. ... ......++...+.. ... |+||
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~----~~~~l~~~~~~~~~~~~~-~~ii 150 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEE----EHKATEKILKMFGERARS-FMIL 150 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSH----HHHHHHHHHHHHHHHHGG-GEEE
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHH----HHHHHHHHHHHhhhhccc-eEEE
Confidence 7899999999954 3444455566778999999999753 111 11122222222222 233 4999
Q ss_pred EEeCCCCCCCCh--hhHHHHHHHHHHHHHhcCCCCCCccEEEEeccc
Q 012085 411 AVNKMDAVQYSK--DRFDSIKVQLGTFLRSCGFKDASLTWIPLSALE 455 (471)
Q Consensus 411 VvNKiDl~~~~~--e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAkt 455 (471)
|+||+|+..... +.+....+.+..+++.++. .++++++..
T Consensus 151 v~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-----~~~~~~~~~ 192 (239)
T 3lxx_A 151 IFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-----RYCALNNKA 192 (239)
T ss_dssp EEECGGGC------------CHHHHHHHHHHSS-----SEEECCTTC
T ss_pred EEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-----EEEEEECCC
Confidence 999999974321 1111222356667777664 456666653
No 172
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.59 E-value=6.8e-16 Score=150.23 Aligned_cols=84 Identities=23% Similarity=0.136 Sum_probs=51.4
Q ss_pred cCCEEEEEEeCCCCccccccchhhhHHHHHHHHHH---hcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCC
Q 012085 367 QSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIR---SFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (471)
Q Consensus 367 ~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~---~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (471)
.+|++|+|+|++... ..+ +.....++..+.. ..++| +|||+||+|+.. ...+ +.+..+....
T Consensus 162 ~ad~vilV~D~t~~~-~~s---~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~~--~~~v----~~~~~~~~~~---- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM-NRN---FDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDEGV--ERYI----RDAHTFALSK---- 226 (255)
T ss_dssp ECCEEEEEEECBC-----C---HHHHHHHHHHHHHHHHHTTCC-EEEEEECGGGBC--HHHH----HHHHHHHHTS----
T ss_pred cCCEEEEEEECCCCc-hhh---HHHHHHHHHHHHHHhccCCCC-EEEEEEcccccc--cHHH----HHHHHHHHhc----
Confidence 699999999998640 012 2222333323222 23555 999999999963 2222 3334443332
Q ss_pred CCccEEEEecccCCCccccCCc
Q 012085 444 ASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 444 ~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..++++++||++|.||.+++..
T Consensus 227 ~~~~~~e~SAk~g~gv~elf~~ 248 (255)
T 3c5h_A 227 KNLQVVETSARSNVNVDLAFST 248 (255)
T ss_dssp SSCCEEECBTTTTBSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 1357899999999999987643
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.59 E-value=5.7e-15 Score=144.09 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=77.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
++.++|+|+|++|+|||||+|+|++....... ...+.|.......+...+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~ 83 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS------------------------------PFQAEGLRPVMVSRTMGG 83 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC------------------------------SSCC-CCCCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC------------------------------CCCCcceeeEEEEEEECC
Confidence 46789999999999999999999964321111 112233333334455677
Q ss_pred eEEEEEeCCCCCCchhhhhhcc---------ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-C---CCeEEE
Q 012085 344 YHVVVLDSPGHKDFVPNMISGA---------TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-G---VDQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l---------~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~---vp~IIV 410 (471)
..++||||||+.++......++ ..+|++|||+++.... +......++..+... + ..|+|+
T Consensus 84 ~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 84 FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-------VDELDKQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-------CCHHHHHHHHHHHHHhchhhhcCEEE
Confidence 8999999999877643322222 2689999999887541 122333444444332 2 125999
Q ss_pred EEeCCCCCCCC
Q 012085 411 AVNKMDAVQYS 421 (471)
Q Consensus 411 VvNKiDl~~~~ 421 (471)
|+||+|+....
T Consensus 157 v~nK~Dl~~~~ 167 (262)
T 3def_A 157 VLTHAQFSPPD 167 (262)
T ss_dssp EEECTTCCCST
T ss_pred EEeCcccCCCC
Confidence 99999996433
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.59 E-value=8.9e-15 Score=135.22 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=99.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|||||||+++|++..... ......+.........+....
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-----------------------------~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-----------------------------ESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-----------------------------SCCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-----------------------------CCCCccceEEEEEEEEECCEE
Confidence 346899999999999999999999632111 011122333333333344444
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc--CCCeEEEEEeCCCCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF--GVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~--~vp~IIVVvNKiDl~~~~ 421 (471)
..+.+|||||++++...+..+++.++++|+|+|.....+ +... ..++..+... ...++++|+||+|+....
T Consensus 78 ~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~ 150 (191)
T 1oix_A 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT------YENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLR 150 (191)
T ss_dssp EEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH------HHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred EEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH------HHHH-HHHHHHHHHhcCCCCcEEEEEECccccccc
Confidence 567789999999988888888888999999999985421 1111 1222222221 223599999999996422
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
..... ..+.++... .+.++++||+++.|+.+++.
T Consensus 151 ~~~~~----~a~~l~~~~-----~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 151 AVPTD----EARAFAEKN-----GLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp CSCHH----HHHHHHHHT-----TCEEEECCTTTCTTHHHHHH
T ss_pred ccCHH----HHHHHHHHc-----CCEEEEEeCCCCCCHHHHHH
Confidence 22222 233333333 35789999999999988754
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=1.6e-15 Score=149.22 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=67.8
Q ss_pred CeEEEEEeCCCCC-------------CchhhhhhccccCCEEE-EEEeCCCCccccccchhhhHH-HHHHHHHHhcCCCe
Q 012085 343 NYHVVVLDSPGHK-------------DFVPNMISGATQSDAAI-LVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (471)
Q Consensus 343 ~~~l~LIDTPG~e-------------~f~~~~~~~l~~aD~vI-lVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~vp~ 407 (471)
...++||||||+. .+...+..+++.++.+| +|+|++.+. ..+. ..++..+...+.|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~--------~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDL--------ANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCG--------GGCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcch--------hhhHHHHHHHHhCCCCCe-
Confidence 4689999999964 24455667788888776 799998762 2222 2345555555666
Q ss_pred EEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 408 IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+|+||+|+........ ..+...+ ........+++++||++|.|+.+++.
T Consensus 195 ~i~V~NK~Dl~~~~~~~~----~~~~~~~--~~~~~~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 195 TIGVITKLDLMDEGTDAR----DVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEEECGGGSCTTCCCH----HHHTTCS--SCCTTCEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEEccccCCCCchHH----HHHhCCc--CcCCCCcEEEECCChhhccccccHHH
Confidence 999999999985322111 1122111 11111124679999999999998753
No 176
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.2e-15 Score=135.46 Aligned_cols=129 Identities=21% Similarity=0.201 Sum_probs=80.7
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
.+.++|+|+|.+|+|||||+++|++....... ....++++. ....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~----------------------------~~~~~~~~~-------~~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV----------------------------VSQEPLSAA-------DYDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------------------------------------CCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccc----------------------------ccCCCceee-------eecC
Confidence 35678999999999999999999963211100 000011111 1245
Q ss_pred eEEEEEeCCCCCCchhhhhhcccc----CCEEEEEEeCC-CCccccccchhhhHHHHHHHHHHh------cCCCeEEEEE
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQ----SDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRS------FGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~----aD~vIlVVDas-~g~~e~~~~~l~~~~~e~l~ll~~------~~vp~IIVVv 412 (471)
..+.||||||+..+...+..++.. +|++|||+|++ .. ..+.....++..++.. .+.| ++||+
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~ 163 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILIAC 163 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH------HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc------hhHHHHHHHHHHHHhhhhhccccCCC-EEEEE
Confidence 678999999999887766666655 89999999998 33 1233333333344332 2455 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHHHHH
Q 012085 413 NKMDAVQYSKDRFDSIKVQLGTFL 436 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~~~l 436 (471)
||+|+... ...+++.+.+.+.+
T Consensus 164 nK~Dl~~~--~~~~~~~~~l~~~l 185 (193)
T 2ged_A 164 NKSELFTA--RPPSKIKDALESEI 185 (193)
T ss_dssp ECTTSTTC--CCHHHHHHHHHHHH
T ss_pred EchHhcCC--CCHHHHHHHHHHHH
Confidence 99999853 23344555554444
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=1e-14 Score=135.53 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=92.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
+..+|+|+|++|+|||||+++|++..... ......|.+.......+. +
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~-----------------------------~~~~~~G~~~~~~~~~~~--~- 72 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLA-----------------------------RTSKTPGRTQLINLFEVA--D- 72 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEEEEE--T-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-----------------------------cccCCCccceeeEEEEec--C-
Confidence 45689999999999999999998632100 001123333322222222 2
Q ss_pred EEEEEeCCCCCC----------chhh---hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEE
Q 012085 345 HVVVLDSPGHKD----------FVPN---MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (471)
Q Consensus 345 ~l~LIDTPG~e~----------f~~~---~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVV 411 (471)
.+.||||||+.. +... +......++++++|+|+..+.. ....+...++...++| +++|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~~~~~~~~-~~~v 143 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK--------DLDQQMIEWAVDSNIA-VLVL 143 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc--------hhHHHHHHHHHHcCCC-eEEE
Confidence 688999999743 1211 2222356899999999987621 2233445556667777 8889
Q ss_pred EeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 412 VNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 412 vNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+||+|+.. ....+.....+..++...+ ..+.++|+||+++.|+.+++.
T Consensus 144 ~nK~D~~s--~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 144 LTKADKLA--SGARKAQLNMVREAVLAFN---GDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp EECGGGSC--HHHHHHHHHHHHHHHGGGC---SCEEEEECBTTTTBSHHHHHH
T ss_pred EecccCCC--chhHHHHHHHHHHHHHhcC---CCCceEEEeecCCCCHHHHHH
Confidence 99999873 2222222344455554433 235789999999999987653
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.54 E-value=3.1e-14 Score=146.24 Aligned_cols=156 Identities=24% Similarity=0.256 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
..|+|+|.+|+|||||+|+|++..... ....+.|.+.....+...+..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~-------------------------------~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKV-------------------------------DTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccc-------------------------------cCCcccccCCEEEEEEECCEEE
Confidence 349999999999999999999642110 0112223222223344456789
Q ss_pred EEEeCCCCCCc--------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc---CCCeEEEEEeCC
Q 012085 347 VVLDSPGHKDF--------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF---GVDQLIVAVNKM 415 (471)
Q Consensus 347 ~LIDTPG~e~f--------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~---~vp~IIVVvNKi 415 (471)
.+|||||+... ...+...+..+|++|+|+|++.+.. ....+...+..++... +.| +|+|+||+
T Consensus 229 ~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~-----~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 229 MLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSEN-----LLIETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp EEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHH-----HHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-----hHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 99999996321 1233456788999999999986520 0112233334455543 344 99999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
|+..... ......+..+...+.. ....++++||++|.|+.+++.
T Consensus 303 Dl~~~~~---~~~~~~~~~l~~~l~~--~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 303 DKINGDL---YKKLDLVEKLSKELYS--PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp GGCCSCH---HHHHHHHHHHHHHHCS--CEEEEEECBTTTTBSHHHHHH
T ss_pred CCCCchH---HHHHHHHHHHHHHhcC--CCCcEEEEECCCCcCHHHHHH
Confidence 9975321 1112222222233311 234679999999999987653
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=2.8e-14 Score=139.62 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN 343 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 343 (471)
...++|+|+|.+|+|||||+|+|++........ ..+.|.......+...+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 86 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISP------------------------------FQSEGPRPVMVSRSRAG 86 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCSSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccC------------------------------CCCcceeeEEEEEeeCC
Confidence 346899999999999999999999643211110 11222222223345567
Q ss_pred eEEEEEeCCCCCCchh---hhh----hc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh-cCC---CeEEE
Q 012085 344 YHVVVLDSPGHKDFVP---NMI----SG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS-FGV---DQLIV 410 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~---~~~----~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~-~~v---p~IIV 410 (471)
..++||||||+.++.. .+. .+ .+.+|++|||+|+.... +.....+++..+.. ++. .|+|+
T Consensus 87 ~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~-------~~~~~~~~~~~l~~~~~~~~~~~iiv 159 (270)
T 1h65_A 87 FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAITDSFGKGIWNKAIV 159 (270)
T ss_dssp EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCc-------CCHHHHHHHHHHHHHhCcccccCEEE
Confidence 8999999999876542 111 11 24699999999886431 22233344444433 232 25999
Q ss_pred EEeCCCCCCC
Q 012085 411 AVNKMDAVQY 420 (471)
Q Consensus 411 VvNKiDl~~~ 420 (471)
|+||+|+...
T Consensus 160 V~nK~Dl~~~ 169 (270)
T 1h65_A 160 ALTHAQFSPP 169 (270)
T ss_dssp EEECCSCCCG
T ss_pred EEECcccCCc
Confidence 9999999753
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.50 E-value=1.6e-14 Score=143.31 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=50.6
Q ss_pred CCeEEEEEeCCCCCC-------------chhhhhhccccCCEEEEEEeCC-CCccccccchhhhHHHHHHHHHHhcCCCe
Q 012085 342 KNYHVVVLDSPGHKD-------------FVPNMISGATQSDAAILVIDAS-VGSFEVGMNTAKGLTREHAQLIRSFGVDQ 407 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~-------------f~~~~~~~l~~aD~vIlVVDas-~g~~e~~~~~l~~~~~e~l~ll~~~~vp~ 407 (471)
....++||||||+.. +...+..++..+|++|||+|+. .+.. ......++..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHHHHHHHHhCCCCCc-
Confidence 457899999999754 4556677889999999999974 3311 11223455555556666
Q ss_pred EEEEEeCCCCCCC
Q 012085 408 LIVAVNKMDAVQY 420 (471)
Q Consensus 408 IIVVvNKiDl~~~ 420 (471)
+|+|+||+|+...
T Consensus 201 ~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 201 TIGVITKLDLMDK 213 (315)
T ss_dssp EEEEEECTTSSCS
T ss_pred EEEEEcCcccCCc
Confidence 9999999999854
No 181
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=147.05 Aligned_cols=159 Identities=18% Similarity=0.229 Sum_probs=76.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC-
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN- 343 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 343 (471)
..++|+|+|++|+|||||+++|++........ .........+++++......+...+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~----------------------~~~~~~~~~~ti~~~~~~~~~~~~~~ 93 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV----------------------IPGAAEKIERTVQIEASTVEIEERGV 93 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC-------------------------------------CEEEEEEEEC----CE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc----------------------ccCCCcccCCceeEEEEEEEeecCCc
Confidence 34789999999999999999998532211100 0000011112222322222233333
Q ss_pred -eEEEEEeCCCC-------CCchhhhh-------hcccc-------------CCEEEEEEeCC-CCccccccchhhhHHH
Q 012085 344 -YHVVVLDSPGH-------KDFVPNMI-------SGATQ-------------SDAAILVIDAS-VGSFEVGMNTAKGLTR 394 (471)
Q Consensus 344 -~~l~LIDTPG~-------e~f~~~~~-------~~l~~-------------aD~vIlVVDas-~g~~e~~~~~l~~~~~ 394 (471)
..++||||||+ +.+..... .+++. +|++||+|+.. .+ +.....
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~--------l~~~d~ 165 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG--------LKPLDV 165 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSS--------CCHHHH
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCC--------cchhHH
Confidence 47899999998 44443332 33322 35788888763 32 233333
Q ss_pred HHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 395 EHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 395 e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+++..+. .++| +|+|+||+|+.. ...+...+..+...+...+ ++|+++||++|.| .+.+
T Consensus 166 ~~~~~l~-~~~p-iIlV~NK~Dl~~--~~ev~~~k~~i~~~~~~~~-----i~~~~~Sa~~~~~-~e~~ 224 (361)
T 2qag_A 166 AFMKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAESDE-DEDF 224 (361)
T ss_dssp HHHHHTC-S-SC-EEEEEECCSSSC--HHHHHHHHHHHHHHTTCC------CCSCCCC----------C
T ss_pred HHHHHhc-cCCC-EEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC-----CCEEeCCCcCCCc-chhH
Confidence 4444332 3455 999999999984 3334444456666654443 5779999999998 5544
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.49 E-value=4e-14 Score=147.04 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCC
Q 012085 344 YHVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVG 380 (471)
Q Consensus 344 ~~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g 380 (471)
..+.||||||+.. +...++.+++.+|++|+|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 5799999999754 233445678899999999999875
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.49 E-value=3.7e-14 Score=157.03 Aligned_cols=111 Identities=21% Similarity=0.208 Sum_probs=70.0
Q ss_pred eEEEEEeCCCCCC---chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHH-HHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 344 YHVVVLDSPGHKD---FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTRE-HAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 344 ~~l~LIDTPG~e~---f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e-~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
..++||||||+.. ....+..++..+|++|||+|++.+.+ ....+ +...+...+.| +|+|+||+|+..
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s--------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~ 244 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT--------LGERRYLENYIKGRGLT-VFFLVNAWDQVR 244 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC--------HHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc--------hhHHHHHHHHHHhhCCC-EEEEEECccccc
Confidence 4699999999544 45566788899999999999987632 22222 22344445666 999999999974
Q ss_pred CC---hh---hHHHHHHHH----HHHHHhc----CCCCCCccEEEEecc--------------cCCCccccC
Q 012085 420 YS---KD---RFDSIKVQL----GTFLRSC----GFKDASLTWIPLSAL--------------ENQNLVTAP 463 (471)
Q Consensus 420 ~~---~e---~~eei~~~L----~~~l~~~----g~~~~~i~IIpvSAk--------------tG~gI~e~~ 463 (471)
.. .+ .++.+...+ ...+... ++.....+|++|||+ +|.|+.++.
T Consensus 245 ~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~ 316 (695)
T 2j69_A 245 ESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFM 316 (695)
T ss_dssp GGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHH
T ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHH
Confidence 31 11 222222223 2223221 111123578999999 999988754
No 184
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.43 E-value=1.6e-13 Score=139.95 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=68.9
Q ss_pred cCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCC
Q 012085 340 DSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQ 419 (471)
Q Consensus 340 ~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~ 419 (471)
...+..++||||||.... ....+..+|++|+|+|+..+... ..+. ..+ ...| +|||+||+|+.
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~---~~l~---~~~------~~~p-~ivVlNK~Dl~- 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL---QGIK---KGV------LELA-DIVVVNKADGE- 230 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT---TTCC---TTS------GGGC-SEEEEECCCGG-
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH---HHHH---HhH------hhcC-CEEEEECCCCc-
Confidence 345788999999995432 23335889999999998765211 1111 111 1234 89999999996
Q ss_pred CChhhHHHHHHHHHHHHHhcCCCC--CCccEEEEecccCCCccccCC
Q 012085 420 YSKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 420 ~~~e~~eei~~~L~~~l~~~g~~~--~~i~IIpvSAktG~gI~e~~~ 464 (471)
.....+.....+...+...+... ...+++++||++|+||.+++.
T Consensus 231 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 -HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp -GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 33344445556666554443211 135799999999999988653
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.43 E-value=1.2e-13 Score=140.82 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=68.6
Q ss_pred CCeEEEEEeCCCCCCc-------------hhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeE
Q 012085 342 KNYHVVVLDSPGHKDF-------------VPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL 408 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f-------------~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~I 408 (471)
....++||||||+..+ ...+..++..+|++|||+++..... .......++..+...+.| +
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~------~~~~~~~l~~~~~~~~~~-~ 206 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL------ATSDAIKISREVDPSGDR-T 206 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG------GGCHHHHHHHHSCTTCTT-E
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc------CCHHHHHHHHHhcccCCC-E
Confidence 3567999999998776 5666788899999999998764310 112223333444444556 9
Q ss_pred EEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 409 IVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 409 IVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
|+|+||+|+........ ..+... .. .....|+++|++.+.++.+.+
T Consensus 207 i~V~nK~Dl~~~~~~~~----~~~~~~----~~-~~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 207 FGVLTKIDLMDKGTDAV----EILEGR----SF-KLKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp EEEEECGGGCCTTCCSH----HHHTTS----SS-CCSSCCEEECCCCHHHHHTTC
T ss_pred EEEEeCCccCCCcccHH----HHHcCc----cc-cccCCeEEEEECChHHhccCC
Confidence 99999999985332221 112111 11 123578999999999887654
No 186
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=4e-13 Score=140.34 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=91.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-CeEE
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYHV 346 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~l 346 (471)
.|+|+|.+|||||||+++|++....+... ...|.......+... ...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~-------------------------------~ftTl~p~~G~V~~~~~~~~ 207 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPY-------------------------------PFTTLSPNLGVVEVSEEERF 207 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCC-------------------------------TTCSSCCEEEEEECSSSCEE
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCc-------------------------------ccceecceeeEEEecCcceE
Confidence 48999999999999999998643211110 000111111112233 3689
Q ss_pred EEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCC
Q 012085 347 VVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 418 (471)
Q Consensus 347 ~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~ 418 (471)
+++||||+.. +...+...+..++.+|+|+|++ . ..+..+....++...+...+ ..| .|+|+||+|+.
T Consensus 208 ~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~---~~~~~ls~g~~el~~la~aL~~~P-~ILVlNKlDl~ 282 (416)
T 1udx_A 208 TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-D---EPLKTLETLRKEVGAYDPALLRRP-SLVALNKVDLL 282 (416)
T ss_dssp EEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-S---CHHHHHHHHHHHHHHHCHHHHHSC-EEEEEECCTTS
T ss_pred EEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-c---CCHHHHHHHHHHHHHHhHHhhcCC-EEEEEECCChh
Confidence 9999999754 2233445567799999999997 2 12233333344444443322 344 88899999997
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 419 QYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 419 ~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.. . ....+...+...+ +++|++||++++||.+++.
T Consensus 283 ~~--~----~~~~l~~~l~~~g-----~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 283 EE--E----AVKALADALAREG-----LAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp CH--H----HHHHHHHHHHTTT-----SCEEECCTTTCTTHHHHHH
T ss_pred hH--H----HHHHHHHHHHhcC-----CeEEEEECCCccCHHHHHH
Confidence 42 2 2333444443333 4789999999999987653
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.40 E-value=1.4e-13 Score=140.17 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=62.7
Q ss_pred CeEEEEEeCCCCCC-------------chhhhhhccccCC-EEEEEEeCCCCccccccchhhhHH-HHHHHHHHhcCCCe
Q 012085 343 NYHVVVLDSPGHKD-------------FVPNMISGATQSD-AAILVIDASVGSFEVGMNTAKGLT-REHAQLIRSFGVDQ 407 (471)
Q Consensus 343 ~~~l~LIDTPG~e~-------------f~~~~~~~l~~aD-~vIlVVDas~g~~e~~~~~l~~~~-~e~l~ll~~~~vp~ 407 (471)
...++||||||+.. +...+..++..++ ++|+|+++... +.... ..++..+...+.|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~~~~~~i~~~~~~~~~~- 199 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKVAKEVDPQGQR- 199 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGGCHHHHHHHHHCTTCTT-
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cchhHHHHHHHHhCcCCCc-
Confidence 46899999999532 3344556665555 55667777654 22222 2344545455666
Q ss_pred EEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 408 LIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 408 IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+|+||+|+........ ..+.... .........++++||++|.|+.+++.
T Consensus 200 ~i~V~NK~Dl~~~~~~~~----~~~~~~~--~~l~~~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 200 TIGVITKLDLMDEGTDAR----DVLENKL--LPLRRGYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEEECGGGSCTTCCCH----HHHTTCS--SCCTTCEEECCCCCHHHHHTTCCHHH
T ss_pred eEEEeccccccCcchhHH----HHHhCCc--ccccCCceEEEeCCcccccccccHHH
Confidence 999999999985322111 1111110 11111124678999999999987654
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.37 E-value=8.6e-13 Score=142.40 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=56.4
Q ss_pred eEEEEEeCCCCCC-----------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEE
Q 012085 344 YHVVVLDSPGHKD-----------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAV 412 (471)
Q Consensus 344 ~~l~LIDTPG~e~-----------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVv 412 (471)
..++||||||+.. |...+..++..+|++|||+|++... +......++..+...+.| +|+|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~-------~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLE-------ISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCC-------CCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCC-------CCHHHHHHHHHHHhcCCC-EEEEE
Confidence 3689999999765 4456667788899999999998631 223445566666655555 99999
Q ss_pred eCCCCCCCChhhHHHHHHHHH
Q 012085 413 NKMDAVQYSKDRFDSIKVQLG 433 (471)
Q Consensus 413 NKiDl~~~~~e~~eei~~~L~ 433 (471)
||+|++. .+.+..+...+.
T Consensus 226 NK~Dl~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADMVE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGGSC--HHHHHHHHHHHH
T ss_pred ECCCccC--HHHHHHHHHHhh
Confidence 9999984 344444444443
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.34 E-value=2e-12 Score=131.29 Aligned_cols=105 Identities=20% Similarity=0.148 Sum_probs=65.0
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..++||||||+.++... ....+|++|+|+|+..+.. +..+. . .. .+.| +++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~---~~~l~---~---~~---~~~p-~ivv~NK~Dl~~- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDD---LQGIK---K---GL---MEVA-DLIVINKDDGDN- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC---------CCCC---H---HH---HHHC-SEEEECCCCTTC-
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHH---HHHHH---H---hh---hccc-CEEEEECCCCCC-
Confidence 45778999999997765443 3578999999999986521 11111 1 11 1234 799999999973
Q ss_pred ChhhHHHHHHHHHHHHHhcCCCC--CCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFKD--ASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~~--~~i~IIpvSAktG~gI~e~~ 463 (471)
...+......+...+..++... ...+++++||++|.||.++.
T Consensus 209 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~ 252 (341)
T 2p67_A 209 -HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIW 252 (341)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHH
T ss_pred -hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHH
Confidence 2234444445555444433110 12478999999999998764
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=131.78 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..+.||||||.... .......+|++++|+|+..+.. .+.. .. .+ +..| .|+|+||+|+..
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~------~~~i-~~--~i---l~~~-~ivVlNK~Dl~~- 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDE------LQGI-KR--GI---IEMA-DLVAVTKSDGDL- 226 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSC-SEEEECCCSGGG-
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchh------HHHh-HH--HH---HhcC-CEEEEeeecCCC-
Confidence 35678999999996422 1233567999999999986511 1000 10 11 2445 789999999963
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~ 463 (471)
..........+...+...... ....+++++||++|+|+.++.
T Consensus 227 -~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~ 270 (349)
T 2www_A 227 -IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMW 270 (349)
T ss_dssp -HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHH
T ss_pred -chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHH
Confidence 222222233343333221100 013478999999999998764
No 191
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.33 E-value=7.8e-13 Score=124.05 Aligned_cols=100 Identities=10% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS 421 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~ 421 (471)
.+..+.||||+|+..... . .....+.+|+|+|+..+. ... ..+ ....+.| +++|+||+|+....
T Consensus 107 ~~~d~iiidt~G~~~~~~-~--~~~~~~~~i~vvd~~~~~--------~~~-~~~---~~~~~~~-~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV-D--FDLGENYRVVMVSVTEGD--------DVV-EKH---PEIFRVA-DLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG-G--CCCSCSEEEEEEEGGGCT--------THH-HHC---HHHHHTC-SEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCCCc-h--hccccCcEEEEEeCCCcc--------hhh-hhh---hhhhhcC-CEEEEecccCCcch
Confidence 457899999999621111 1 112478899999998651 111 111 1223455 89999999986321
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 422 KDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 422 ~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...++++.+.+.. .+ +.++++++||++|+|+.+++.
T Consensus 171 ~~~~~~~~~~~~~----~~---~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 171 GADVEKMKADAKL----IN---PRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp TCCHHHHHHHHHH----HC---TTSEEEECBTTTTBTHHHHHH
T ss_pred hhHHHHHHHHHHH----hC---CCCeEEEeecCCCCCHHHHHH
Confidence 1233444444433 22 346899999999999988754
No 192
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.31 E-value=1.5e-12 Score=133.66 Aligned_cols=131 Identities=15% Similarity=0.129 Sum_probs=77.6
Q ss_pred EEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCc---ccc-ccchhhhHHHHHHHHHHh--cCCCeE
Q 012085 335 AVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGS---FEV-GMNTAKGLTREHAQLIRS--FGVDQL 408 (471)
Q Consensus 335 ~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~---~e~-~~~~l~~~~~e~l~ll~~--~~vp~I 408 (471)
....+...+..+.||||+|++.+...+..+++.++++|||+|++..- .+. ....+.....++..++.. +...|+
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 33445556899999999999999999999999999999999999620 000 123344444444444442 122359
Q ss_pred EEEEeCCCCCCCC----------------hhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccCCc
Q 012085 409 IVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 409 IVVvNKiDl~~~~----------------~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|||+||+|+.... ....++....+...+..+.-. ...+.++++||++|+||.++|..
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~ 346 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRD 346 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHH
Confidence 9999999985210 022344444333333222111 23578899999999999987753
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.29 E-value=5.8e-12 Score=125.86 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEe--cCCC
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYF--DSKN 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~--~~~~ 343 (471)
.++|+|+|+.|+|||||+++|++........ +. ..+. ....++........+ ....
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------~~g~--------------~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------GAAE--------------KIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---CC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------cCCc--------------ccCCcceEeeEEEEecCCCcc
Confidence 4789999999999999999998641111110 00 0000 000000000001111 1234
Q ss_pred eEEEEEeCCCC-------CCchhhhh-------hccc-------------cCCEEEEEEeCCCCccccccchhhhHHHHH
Q 012085 344 YHVVVLDSPGH-------KDFVPNMI-------SGAT-------------QSDAAILVIDASVGSFEVGMNTAKGLTREH 396 (471)
Q Consensus 344 ~~l~LIDTPG~-------e~f~~~~~-------~~l~-------------~aD~vIlVVDas~g~~e~~~~~l~~~~~e~ 396 (471)
..+++|||||+ +.+..... .+++ .++++||+++.+.. ++ .....+.
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~----~L---d~~~~~~ 148 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH----GL---KPLDVAF 148 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS----SC---CHHHHHH
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc----CC---CHHHHHH
Confidence 67999999997 44332221 2221 14556777765432 11 2222333
Q ss_pred HHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 397 AQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 397 l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+..+. ..++ +++|+||+|+.. ...+...++.+..++...+ ++|+++||++| |+.++|.
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~~--~~e~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTLT--LKERERLKKRILDEIEEHN-----IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGSC--HHHHHHHHHHHHHHHHHTT-----CCCCCCC----------CH
T ss_pred HHHHH-hcCC-EEEEEEeCCCCC--HHHHHHHHHHHHHHHHHcC-----CeEEecCCccc-cccHHHH
Confidence 33332 1334 999999999973 3333444566667776665 46799999999 9998874
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=1.8e-12 Score=144.04 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=67.0
Q ss_pred CCeEEEEEeCCCCCC-------------chhhhhhcc-ccCCEEEEEEeCCCCccccccchhhhHHH-HHHHHHHhcCCC
Q 012085 342 KNYHVVVLDSPGHKD-------------FVPNMISGA-TQSDAAILVIDASVGSFEVGMNTAKGLTR-EHAQLIRSFGVD 406 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~-------------f~~~~~~~l-~~aD~vIlVVDas~g~~e~~~~~l~~~~~-e~l~ll~~~~vp 406 (471)
....++||||||... +...+..++ ..+|++|+|+|++.+.. .... .++..+...+.|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~--------~~d~l~ll~~L~~~g~p 219 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA--------NSDALKIAKEVDPQGQR 219 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS--------SCHHHHHHHHHCTTCSS
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc--------hhHHHHHHHHHHhcCCC
Confidence 345799999999543 222334444 46899999999997622 2222 456666666776
Q ss_pred eEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 407 QLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 407 ~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+|+|+||+|++...... ..+. ... ..........++++||++|.|+.++..
T Consensus 220 -vIlVlNKiDlv~~~~~~-~~il---~~~--~~~l~lg~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 220 -TIGVITKLDLMDEGTDA-RDVL---ENK--LLPLRRGYIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp -EEEEEECTTSSCTTCCS-HHHH---TTC--SSCCSSCEEECCCCCCEESSSSEEHHH
T ss_pred -EEEEEeCcccCCcchhh-HHHH---HHH--hhhhhccCCceEEecccccccchhHHH
Confidence 99999999998542221 1111 100 011111234679999999999987643
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.26 E-value=2e-11 Score=117.54 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=64.0
Q ss_pred eEEEEEeCCCCCCchhh------hhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 344 YHVVVLDSPGHKDFVPN------MISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~------~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
+.++||||||+..+... +...+.. +++|+|+|+.......+ +..............+.| +++|+||+|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~---~~~~~~~~~~~~~~~~~p-~~iv~NK~D~ 183 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPND---YCFVRFFALLIDLRLGAT-TIPALNKVDL 183 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHH---HHHHHHHHHHHHHHHTSC-EEEEECCGGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHH---HHHHHHHHHHHhcccCCC-eEEEEecccc
Confidence 57999999998664322 2235566 89999999875421111 111111112223344666 8999999999
Q ss_pred CCCChhhHHHHHHHHH---H---------------------HHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 418 VQYSKDRFDSIKVQLG---T---------------------FLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 418 ~~~~~e~~eei~~~L~---~---------------------~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
... ...+++.+.++ . ++..++ ..++++++||++|+|+.+++.
T Consensus 184 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 184 LSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVL---PPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHS---CCCCCEECCTTTCTTHHHHHH
T ss_pred ccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhc---CcccceEEEecCcccHHHHHH
Confidence 742 21222222111 1 123333 224679999999999988653
No 196
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.26 E-value=2.4e-12 Score=131.66 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=87.8
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCcc---c-cccchhhhHHHHHHHHHHh--cC
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSF---E-VGMNTAKGLTREHAQLIRS--FG 404 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~---e-~~~~~l~~~~~e~l~ll~~--~~ 404 (471)
|+.+....+...+..+.||||+|++.+...+..+++.++++|||+|++.... + .....+.....++..++.. +.
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 3333444455678999999999999999999999999999999999995310 0 0123344444444444432 12
Q ss_pred CCeEEEEEeCCCCCCCC---------------hhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccCCc
Q 012085 405 VDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 405 vp~IIVVvNKiDl~~~~---------------~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..|+|||+||+|+.... ....++....+...+..+... ...+.++++||++|+||.++|..
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 23599999999985210 012344444444333333221 24578999999999999987753
No 197
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.26 E-value=3.8e-12 Score=131.23 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=79.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCe
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNY 344 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 344 (471)
-..+|+|||.||||||||+|+|++....+. ..++.|++.....+...+.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~-------------------------------~~pftT~~~~~g~~~~~~~ 119 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAA-------------------------------EYEFTTLVTVPGVIRYKGA 119 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGG-------------------------------GTCSSCCCEEEEEEEETTE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCccc-------------------------------CCCCceeeeeeEEEEeCCc
Confidence 346799999999999999999996432221 1244555555555677889
Q ss_pred EEEEEeCCCCCC-------chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCC
Q 012085 345 HVVVLDSPGHKD-------FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDA 417 (471)
Q Consensus 345 ~l~LIDTPG~e~-------f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl 417 (471)
.++|+||||... ....++..++.+|++++|+|+..+. ........++..+...+..+|.++++||+|.
T Consensus 120 ~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~-----~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 120 KIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL-----HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH-----HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred EEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH-----HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999543 3455677888999999999998651 1111122222111112233447889999997
Q ss_pred C
Q 012085 418 V 418 (471)
Q Consensus 418 ~ 418 (471)
.
T Consensus 195 ~ 195 (376)
T 4a9a_A 195 G 195 (376)
T ss_dssp S
T ss_pred h
Confidence 4
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=2.1e-11 Score=127.38 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEec--CCC
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFD--SKN 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~ 343 (471)
.++|+|+|++|+|||||+++|++........ +.... . . ...+........+. ...
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~------------~~~~~------~---~--~~t~~~~~i~~v~q~~~~~ 87 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEY------------PGPSH------R---I--KKTVQVEQSKVLIKEGGVQ 87 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCC------------CSCC----------------CCEEEEEECC------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCC------------CCccc------C---C--ccceeeeeEEEEEecCCcc
Confidence 4679999999999999999999753321110 00000 0 0 00011111111111 122
Q ss_pred eEEEEEeCCCCCCchh------hh-------------------hhcccc--CCEEEEEEeCC-CCccccccchhhhHHHH
Q 012085 344 YHVVVLDSPGHKDFVP------NM-------------------ISGATQ--SDAAILVIDAS-VGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~------~~-------------------~~~l~~--aD~vIlVVDas-~g~~e~~~~~l~~~~~e 395 (471)
..+++|||||+..+.. .+ ...+.. ++++||+++.+ .+ +.....+
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~--------L~~~d~~ 159 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG--------LKPLDIE 159 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCS--------CCHHHHH
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccC--------CCHHHHH
Confidence 4789999999765421 00 112233 44567766665 34 2333344
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
++..+.. +++ +|+|+||+|+.. ...+...+..+...+...+ ++|+++||++++++.+++.
T Consensus 160 ~lk~L~~-~v~-iIlVinK~Dll~--~~ev~~~k~~i~~~~~~~~-----i~~~~~sa~~~~~v~~~~~ 219 (418)
T 2qag_C 160 FMKRLHE-KVN-IIPLIAKADTLT--PEECQQFKKQIMKEIQEHK-----IKIYEFPETDDEEENKLVK 219 (418)
T ss_dssp HHHHHTT-TSE-EEEEEESTTSSC--HHHHHHHHHHHHHHHHHHT-----CCCCCCC------------
T ss_pred HHHHHhc-cCc-EEEEEEcccCcc--HHHHHHHHHHHHHHHHHcC-----CeEEeCCCCCCcCHHHHHH
Confidence 5554543 555 999999999983 4455666677777777665 3668999999999887553
No 199
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.24 E-value=2.7e-12 Score=130.01 Aligned_cols=135 Identities=12% Similarity=0.023 Sum_probs=88.6
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC---c-cccccchhhhHHHHHHHHHHhc--C
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---S-FEVGMNTAKGLTREHAQLIRSF--G 404 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g---~-~e~~~~~l~~~~~e~l~ll~~~--~ 404 (471)
|+......+...+..+.||||+||+.++..+..+++.++++|||+|.+.- . ...+...+.....++..++... .
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~ 233 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccC
Confidence 44445555667789999999999999999999999999999999987610 0 0012334444445554554431 2
Q ss_pred CCeEEEEEeCCCCCCCC----------------hhhHHHHHHHHHHHHHhcC-CCCCCccEEEEecccCCCccccCCc
Q 012085 405 VDQLIVAVNKMDAVQYS----------------KDRFDSIKVQLGTFLRSCG-FKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 405 vp~IIVVvNKiDl~~~~----------------~e~~eei~~~L~~~l~~~g-~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
..|+||++||+|+.... ....++..+-+...+.... .....+.++.+||+++.||.++|..
T Consensus 234 ~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 234 NSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp TCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 23599999999985311 1223444444444443332 2224567889999999999988754
No 200
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.20 E-value=2.5e-11 Score=124.61 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCCCch-------hhhhhccccCCEEEEEEeCCC
Q 012085 344 YHVVVLDSPGHKDFV-------PNMISGATQSDAAILVIDASV 379 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~-------~~~~~~l~~aD~vIlVVDas~ 379 (471)
..++||||||+..+. ..++.+++.+|++|+|+|+..
T Consensus 66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 579999999987653 344567889999999999986
No 201
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.17 E-value=9.4e-12 Score=126.64 Aligned_cols=135 Identities=13% Similarity=0.044 Sum_probs=88.6
Q ss_pred EEEEEEEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC---c-cccccchhhhHHHHHHHHHHhc--C
Q 012085 331 TMTVAVAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---S-FEVGMNTAKGLTREHAQLIRSF--G 404 (471)
Q Consensus 331 Ti~~~~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g---~-~e~~~~~l~~~~~e~l~ll~~~--~ 404 (471)
|+.+....+...+..++||||+||+.++..+..+++.++++|||+|.+.- . ...+...+.....++..++... .
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~ 227 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLK 227 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGT
T ss_pred eeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccC
Confidence 44455556677889999999999999999999999999999999999720 0 0012334545555555555432 2
Q ss_pred CCeEEEEEeCCCCCCCC---------------hhhHHHHHHHHHHHH------HhcCCCC------------CCccEEEE
Q 012085 405 VDQLIVAVNKMDAVQYS---------------KDRFDSIKVQLGTFL------RSCGFKD------------ASLTWIPL 451 (471)
Q Consensus 405 vp~IIVVvNKiDl~~~~---------------~e~~eei~~~L~~~l------~~~g~~~------------~~i~IIpv 451 (471)
..|+||++||+|+.... ...+++..+-+...+ ..+.... ..+.++++
T Consensus 228 ~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~T 307 (340)
T 4fid_A 228 GAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPT 307 (340)
T ss_dssp TSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEE
T ss_pred CCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEE
Confidence 23599999999985210 012344444444443 2222111 24788999
Q ss_pred ecccCCCccccCCc
Q 012085 452 SALENQNLVTAPDD 465 (471)
Q Consensus 452 SAktG~gI~e~~~~ 465 (471)
||+++.||..+|..
T Consensus 308 sA~dt~nv~~vF~~ 321 (340)
T 4fid_A 308 NATDGSNIKRVFML 321 (340)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred EeeCcHHHHHHHHH
Confidence 99999999887754
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.13 E-value=3.2e-11 Score=124.01 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCCc-------hhhhhhccccCCEEEEEEeCCC
Q 012085 343 NYHVVVLDSPGHKDF-------VPNMISGATQSDAAILVIDASV 379 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f-------~~~~~~~l~~aD~vIlVVDas~ 379 (471)
...+.||||||+..+ ...+...++.+|++|+|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 357999999997654 3455677899999999999985
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.02 E-value=2.6e-10 Score=107.08 Aligned_cols=99 Identities=11% Similarity=0.111 Sum_probs=56.6
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChh
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKD 423 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e 423 (471)
..+.++|++|...... ..-...+..+.|+|+..+.. .... ...+ .+.| +++|+||+|+......
T Consensus 119 ~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~------~~~~---~~~~---~~~~-~iiv~NK~Dl~~~~~~ 182 (226)
T 2hf9_A 119 IDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDD------TIEK---HPGI---MKTA-DLIVINKIDLADAVGA 182 (226)
T ss_dssp CSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTT------TTTT---CHHH---HTTC-SEEEEECGGGHHHHTC
T ss_pred CCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchh------hHhh---hhhH---hhcC-CEEEEeccccCchhHH
Confidence 4799999999422211 11223566788888653311 0000 0111 2455 8999999998631111
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCCc
Q 012085 424 RFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 424 ~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
.++++...+. .++ +.++++++||++|.|+.+++..
T Consensus 183 ~~~~~~~~~~----~~~---~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 183 DIKKMENDAK----RIN---PDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CHHHHHHHHH----HHC---TTSEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHH----HhC---CCCeEEEEEecCCCCHHHHHHH
Confidence 2333333333 322 2468999999999999987643
No 204
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=1.7e-09 Score=109.75 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=59.5
Q ss_pred CCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC
Q 012085 341 SKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY 420 (471)
Q Consensus 341 ~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~ 420 (471)
..+..++||||||...-.. .....+|++++|+|+..+. ....+.. .. . . .+ .++|+||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~---~~~~i~~---~i---~-~--~~-~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGD---ELQGIKK---GI---F-E--LA-DMIAVNKADDGDG 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC---------CCT---TH---H-H--HC-SEEEEECCSTTCC
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcc---cHHHHHH---HH---h-c--cc-cEEEEEchhccCc
Confidence 3578899999999654322 2246799999999987541 1100101 01 1 1 13 5777899997632
Q ss_pred ChhhHHHHHHHHHHHHHhcCCC--CCCccEEEEecccCCCccccC
Q 012085 421 SKDRFDSIKVQLGTFLRSCGFK--DASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 421 ~~e~~eei~~~L~~~l~~~g~~--~~~i~IIpvSAktG~gI~e~~ 463 (471)
........+.+...+...... ....+++++||++|.|+.++.
T Consensus 209 -~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~ 252 (337)
T 2qm8_A 209 -ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLW 252 (337)
T ss_dssp -HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHH
T ss_pred -hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHH
Confidence 222222333443333222210 012478999999999998754
No 205
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=2.5e-10 Score=117.22 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+|+++|.+|+|||||+|+|++...... ........+|+|.......+.. .+
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~-------------------------~~~~~~~~~gtT~~~~~~~~~~---~~ 214 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG-------------------------NVITTSYFPGTTLDMIEIPLES---GA 214 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT-------------------------CCCEEEECTTSSCEEEEEECST---TC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc-------------------------cceeecCCCCeEEeeEEEEeCC---Ce
Confidence 4699999999999999999996421100 0111223355665554443332 38
Q ss_pred EEEeCCCCCCch-------hhhhhcc---ccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 347 VVLDSPGHKDFV-------PNMISGA---TQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 347 ~LIDTPG~e~f~-------~~~~~~l---~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.|+||||..... ...+..+ ...+.++|++++.+..+..++.. +.++...+.| +++++||+|
T Consensus 215 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 215 TLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp EEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCce-EEEEecCCc
Confidence 999999954321 1222333 66899999999964422222211 2222333444 999999999
Q ss_pred CCC
Q 012085 417 AVQ 419 (471)
Q Consensus 417 l~~ 419 (471)
...
T Consensus 286 ~~~ 288 (369)
T 3ec1_A 286 TVH 288 (369)
T ss_dssp CEE
T ss_pred ccc
Confidence 874
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=5.4e-09 Score=109.31 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=73.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCC--
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKN-- 343 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-- 343 (471)
.++|+|+|++|+|||||+|.|+|.... ... . .....+.+.......+....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~--g~~---------~----------------~~~~~~~~~~~i~~v~Q~~~l~ 94 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFE--GEP---------A----------------THTQPGVQLQSNTYDLQESNVR 94 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC----------------------------------CCSSCEEEEEEEEEEC--CE
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcccc--CCc---------C----------------CCCCccceEeeEEEEeecCccc
Confidence 456999999999999999999975210 000 0 00001112211111122222
Q ss_pred eEEEEEeCCCCCCchh--------------hh----hhc--c-------cc--CC-EEEEEEeCCCCccccccchhhhHH
Q 012085 344 YHVVVLDSPGHKDFVP--------------NM----ISG--A-------TQ--SD-AAILVIDASVGSFEVGMNTAKGLT 393 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~--------------~~----~~~--l-------~~--aD-~vIlVVDas~g~~e~~~~~l~~~~ 393 (471)
..++++|++|...... .+ ... + .. +| +++||+|+..+ +....
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--------l~~~D 166 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--------LKSLD 166 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----------CHHH
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--------CCHHH
Confidence 3689999999643210 11 111 1 11 23 36667777766 34455
Q ss_pred HHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcC
Q 012085 394 REHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCG 440 (471)
Q Consensus 394 ~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g 440 (471)
.+++..+. .++ ++|+|+||+|.+ ....+..++..+...+...|
T Consensus 167 ieilk~L~-~~~-~vI~Vi~KtD~L--t~~E~~~l~~~I~~~L~~~g 209 (427)
T 2qag_B 167 LVTMKKLD-SKV-NIIPIIAKADAI--SKSELTKFKIKITSELVSNG 209 (427)
T ss_dssp HHHHHHTC-SCS-EEEEEESCGGGS--CHHHHHHHHHHHHHHHBTTB
T ss_pred HHHHHHHh-hCC-CEEEEEcchhcc--chHHHHHHHHHHHHHHHHcC
Confidence 55555554 344 599999999998 34455666666666554444
No 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.83 E-value=5.1e-10 Score=114.91 Aligned_cols=131 Identities=12% Similarity=0.188 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCCCeEE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSKNYHV 346 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~l 346 (471)
.+|+++|.+|+|||||+|+|++....... ........+|.|.......+.. .+
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~------------------------~~~~~~~~~gtT~~~~~~~~~~---~~ 213 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETE------------------------NVITTSHFPGTTLDLIDIPLDE---ES 213 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCS------------------------SCCEEECCC----CEEEEESSS---SC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccc------------------------cceecCCCCCeecceEEEEecC---Ce
Confidence 46999999999999999999964311100 0111233456666555544432 38
Q ss_pred EEEeCCCCCCch-------hhhhhc---cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 347 VVLDSPGHKDFV-------PNMISG---ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 347 ~LIDTPG~e~f~-------~~~~~~---l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
.|+||||..... ...+.. ....+.+++++++....+..++.. +.++...+.| +++++||+|
T Consensus 214 ~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~--------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 214 SLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR--------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp EEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEE-EEEEECTTS
T ss_pred EEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE--------EEEecCCCce-EEEEecCcc
Confidence 999999954321 111111 356889999999864422222211 2222233444 999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 012085 417 AVQYSKDRFDSIKVQLGTF 435 (471)
Q Consensus 417 l~~~~~e~~eei~~~L~~~ 435 (471)
... ....+...+.+.+.
T Consensus 285 ~~~--~~~~~~~~~~~~~~ 301 (368)
T 3h2y_A 285 TIH--RTKLEKADELYKNH 301 (368)
T ss_dssp CEE--EEEHHHHHHHHHHH
T ss_pred ccc--cccHHHHHHHHHHH
Confidence 984 33334444444443
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=2.4e-08 Score=98.23 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC--CCe
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--KNY 344 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~ 344 (471)
++|+|+|+.|+|||||+|.|+|......... ...+. +.........+... ++. -..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i--------~~~g~---------~i~~~~~~~~i~~v-----~q~~~~~~ 60 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASS--------WNREE---------KIPKTVEIKAIGHV-----IEEGGVKM 60 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-----------------------------CCCCCSCCEEEES-----CC----CC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCcc--------ccCCc---------ccCcceeeeeeEEE-----eecCCCcC
Confidence 6899999999999999999997543221110 00000 00000001111110 111 123
Q ss_pred EEEEEeCCCCCCch------------------hhhhh----------ccccCCEEEEEEeCC-CCccccccchhhhHHHH
Q 012085 345 HVVVLDSPGHKDFV------------------PNMIS----------GATQSDAAILVIDAS-VGSFEVGMNTAKGLTRE 395 (471)
Q Consensus 345 ~l~LIDTPG~e~f~------------------~~~~~----------~l~~aD~vIlVVDas-~g~~e~~~~~l~~~~~e 395 (471)
.++++|+||..... ..... .+..+++++|++|.. .+ +.....+
T Consensus 61 ~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~g--------L~~lD~~ 132 (270)
T 3sop_A 61 KLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHS--------LRPLDLE 132 (270)
T ss_dssp EEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSS--------CCHHHHH
T ss_pred CceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCc--------CCHHHHH
Confidence 68999999942210 00001 122368899999965 44 3455566
Q ss_pred HHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCC
Q 012085 396 HAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGF 441 (471)
Q Consensus 396 ~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~ 441 (471)
.+..+... ++ +|+|+||+|.. ........+..++..+...++
T Consensus 133 ~l~~L~~~-~~-vI~Vi~K~D~l--t~~e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 133 FMKHLSKV-VN-IIPVIAKADTM--TLEEKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHTT-SE-EEEEETTGGGS--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-Cc-EEEEEeccccC--CHHHHHHHHHHHHHHHHHcCc
Confidence 67777665 54 99999999998 445566677777777766654
No 209
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.78 E-value=5.3e-09 Score=108.64 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=58.9
Q ss_pred EEEecCCCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC---cc-ccccchhhhHHHHHHHHHHh---cCCCeE
Q 012085 336 VAYFDSKNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SF-EVGMNTAKGLTREHAQLIRS---FGVDQL 408 (471)
Q Consensus 336 ~~~~~~~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g---~~-e~~~~~l~~~~~e~l~ll~~---~~vp~I 408 (471)
...+...+..+.||||+|++.+...+..+++.++++|||+|++.- .. ......+.....++..++.. .++ |+
T Consensus 209 ~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~-pi 287 (402)
T 1azs_C 209 ETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTI-SV 287 (402)
T ss_dssp EEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSC-CE
T ss_pred EEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCC-eE
Confidence 344555679999999999999999999999999999999999951 00 00123344444454444442 134 49
Q ss_pred EEEEeCCCCC
Q 012085 409 IVAVNKMDAV 418 (471)
Q Consensus 409 IVVvNKiDl~ 418 (471)
|||+||+|+.
T Consensus 288 iLvgNK~DL~ 297 (402)
T 1azs_C 288 ILFLNKQDLL 297 (402)
T ss_dssp EEEEECHHHH
T ss_pred EEEEEChhhh
Confidence 9999999984
No 210
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=1.3e-08 Score=101.29 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhh
Q 012085 345 HVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDR 424 (471)
Q Consensus 345 ~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~ 424 (471)
.++|||| +++|...+..+++.+|++|+|+|++.+.+ . +. ....++..+...++| +|||+||+|+... ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s---~~-~l~~~l~~~~~~~~p-iilv~NK~DL~~~--~~ 132 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--S---TY-IIDKFLVLAEKNELE-TVMVINKMDLYDE--DD 132 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--C---HH-HHHHHHHHHHHTTCE-EEEEECCGGGCCH--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--C---HH-HHHHHHHHHHHCCCC-EEEEEeHHHcCCc--hh
Confidence 7999999 99999999999999999999999997631 1 11 223334444555665 8999999999732 22
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
. +.+..++..++. . +.|+++||++|.||.+++.
T Consensus 133 v----~~~~~~~~~~~~--~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 133 L----RKVRELEEIYSG--L-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp H----HHHHHHHHHHTT--T-SCEEECCTTTCTTHHHHHH
T ss_pred H----HHHHHHHHHHhh--h-CcEEEEECCCCcCHHHHHH
Confidence 2 223333333331 1 5789999999999998764
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=1.4e-08 Score=108.31 Aligned_cols=66 Identities=29% Similarity=0.511 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCCCc----hhhhhhc--cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeE-EEEEeC
Q 012085 342 KNYHVVVLDSPGHKDF----VPNMISG--ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQL-IVAVNK 414 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f----~~~~~~~--l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~I-IVVvNK 414 (471)
.++.++||||||.... ....... +..+|.+|||+|+..+.. ....+..+... +| + +||+||
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~----------~~~~a~~~~~~-~~-i~gvVlNK 249 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA----------CEAQAKAFKDK-VD-VASVIVTK 249 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT----------HHHHHHHHHHH-HC-CCCEEEEC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc----------HHHHHHHHHhh-cC-ceEEEEeC
Confidence 5678999999996532 2222111 226899999999997621 11222222221 33 4 889999
Q ss_pred CCCCC
Q 012085 415 MDAVQ 419 (471)
Q Consensus 415 iDl~~ 419 (471)
+|...
T Consensus 250 ~D~~~ 254 (504)
T 2j37_W 250 LDGHA 254 (504)
T ss_dssp TTSCC
T ss_pred Ccccc
Confidence 99874
No 212
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.69 E-value=5.2e-09 Score=107.01 Aligned_cols=124 Identities=12% Similarity=0.071 Sum_probs=75.3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCC---cc-ccccchhhhHHHHHHHHHHh--cCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVG---SF-EVGMNTAKGLTREHAQLIRS--FGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g---~~-e~~~~~l~~~~~e~l~ll~~--~~vp~IIVVvNKi 415 (471)
....+.||||+|++.+...+..+++.++++|||+|.+.- .. ..+...+.....++..++.. ....|+|||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 457899999999999999999999999999999998710 00 01233444444444444432 2223599999999
Q ss_pred CCCCCCh---------------------hhHHHHHHHHHHHHHhc---C-CC---CCCccEEEEecccCCCccccCCc
Q 012085 416 DAVQYSK---------------------DRFDSIKVQLGTFLRSC---G-FK---DASLTWIPLSALENQNLVTAPDD 465 (471)
Q Consensus 416 Dl~~~~~---------------------e~~eei~~~L~~~l~~~---g-~~---~~~i~IIpvSAktG~gI~e~~~~ 465 (471)
|+..... ...++..+.+...+..+ . .. ...+.++++||++|+||.++|..
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~ 338 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKL 338 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHH
Confidence 9842100 01222222222221111 1 00 12345789999999999988754
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.65 E-value=1.4e-08 Score=105.18 Aligned_cols=84 Identities=20% Similarity=0.104 Sum_probs=48.3
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC---
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS--- 341 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--- 341 (471)
...+|+|+|.+|+|||||+|+|++....... .++.|+......+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~-------------------------------~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAEN-------------------------------FPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccC-------------------------------CCccccCceeEEEEECCc
Confidence 3467999999999999999999964321110 011111111111111
Q ss_pred --------------CCeEEEEEeCCCCCCchh-------hhhhccccCCEEEEEEeCCC
Q 012085 342 --------------KNYHVVVLDSPGHKDFVP-------NMISGATQSDAAILVIDASV 379 (471)
Q Consensus 342 --------------~~~~l~LIDTPG~e~f~~-------~~~~~l~~aD~vIlVVDas~ 379 (471)
....++||||||+..+.. .+..+++.+|++|+|+|+..
T Consensus 70 r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 70 RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 124699999999776433 56788899999999999974
No 214
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=98.58 E-value=1.7e-08 Score=66.99 Aligned_cols=26 Identities=35% Similarity=1.072 Sum_probs=24.8
Q ss_pred CceeecccccCCCCccccccccCCCC
Q 012085 49 RVWSCAICTYDNEEGMSVCDICGVLR 74 (471)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r 74 (471)
+.|.|+.|||.|+..+..||||+.+|
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 46999999999999999999999998
No 215
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.2e-08 Score=74.55 Aligned_cols=33 Identities=24% Similarity=0.734 Sum_probs=29.0
Q ss_pred ccCCCCceeecccccCCCCccccccccCCCCCc
Q 012085 44 ETSKPRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (471)
Q Consensus 44 ~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (471)
....++.|.|+.|||.|...+..||||+++|..
T Consensus 5 ~~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 5 SSGDEGYWDCSVCTFRNSAEAFKCMMCDVRKGT 37 (53)
T ss_dssp CSSCCCCEECSSSCCEECSSCSSCSSSCCCCCC
T ss_pred CCCCCCCcCCCCCccCCCCCCCccCCCCCcCCc
Confidence 344567899999999999999999999999964
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.52 E-value=2.7e-07 Score=96.18 Aligned_cols=155 Identities=18% Similarity=0.117 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecCC-CeE
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDSK-NYH 345 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-~~~ 345 (471)
..|+|+|++|+|||||+|.|+|........ ...+. ....+ .+. .++.. ...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~Gs---------I~~~g-----------~~~t~-~~~-------v~q~~~~~~ 121 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGA---------AKTGV-----------VEVTM-ERH-------PYKHPNIPN 121 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTS---------CCCCC---------------C-CCE-------EEECSSCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCce---------EEECC-----------eecce-eEE-------eccccccCC
Confidence 479999999999999999999743211100 00000 00000 011 11111 125
Q ss_pred EEEEeCCCCCC---chhhhhh--ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC--
Q 012085 346 VVVLDSPGHKD---FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV-- 418 (471)
Q Consensus 346 l~LIDTPG~e~---f~~~~~~--~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~-- 418 (471)
++++|+||... -...++. .+...+..++ ++...+ +.+...++..+...+.| +++|+||.|+.
T Consensus 122 ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~---------~kqrv~la~aL~~~~~p-~~lV~tkpdlllL 190 (413)
T 1tq4_A 122 VVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF---------KKNDIDIAKAISMMKKE-FYFVRTKVDSDIT 190 (413)
T ss_dssp EEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC---------CHHHHHHHHHHHHTTCE-EEEEECCHHHHHH
T ss_pred eeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc---------cHHHHHHHHHHHhcCCC-eEEEEecCccccc
Confidence 89999999431 1122222 2333455554 676533 34566667777777766 99999999975
Q ss_pred -----CCChhhHHHHHHHHHHHH----HhcCCCCCCccEEEEec--ccCCCcccc
Q 012085 419 -----QYSKDRFDSIKVQLGTFL----RSCGFKDASLTWIPLSA--LENQNLVTA 462 (471)
Q Consensus 419 -----~~~~e~~eei~~~L~~~l----~~~g~~~~~i~IIpvSA--ktG~gI~e~ 462 (471)
+-+....+++.+.++.+. ...|.. ...+|++|+ +.+.|+.++
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~--~~~iiliSsh~l~~~~~e~L 243 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA--EPPIFLLSNKNVCHYDFPVL 243 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS--SCCEEECCTTCTTSTTHHHH
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC--CCcEEEEecCcCCccCHHHH
Confidence 111122344455555543 233321 236799999 666667653
No 217
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=98.51 E-value=3.6e-08 Score=66.78 Aligned_cols=28 Identities=29% Similarity=0.806 Sum_probs=26.0
Q ss_pred CCceeecccccCCCCccccccccCCCCC
Q 012085 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
...|.|+.|||.|+.++..||||++.|.
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcCc
Confidence 4469999999999999999999999995
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.50 E-value=3.7e-07 Score=95.86 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCeEEEEEeCCCCCCchhhhh------hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~------~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.++.++||||||......... ..+..+|.++||+|+..+ ......+..+... .+...||+||+
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g----------q~a~~~a~~f~~~-~~i~gVIlTKl 249 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG----------QQAYNQALAFKEA-TPIGSIIVTKL 249 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHHS-CTTEEEEEECC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc----------hhHHHHHHHHHhh-CCCeEEEEECC
Confidence 457899999999543222221 223358999999999865 1112222333322 23367899999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|.... . ..+..+....+ +++..++. |++++++
T Consensus 250 D~~~~-g-------G~~ls~~~~~g-----~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 250 DGSAK-G-------GGALSAVAATG-----APIKFIGT--GEKIDDI 281 (443)
T ss_dssp SSCSS-H-------HHHHHHHHTTC-----CCEEEEEC--SSSTTCE
T ss_pred CCccc-c-------cHHHHHHHHHC-----CCEEEEEc--CCChHHh
Confidence 98642 1 11222222333 46677775 8888653
No 219
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=69.22 Aligned_cols=31 Identities=29% Similarity=0.679 Sum_probs=27.6
Q ss_pred CCCceeecccccCCCCccccccccCCCCCcc
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (471)
....|.|+.|||.|+.+...||||+..|...
T Consensus 7 ~~~~W~Cp~CTf~N~p~~~~CemC~~prp~~ 37 (52)
T 2crc_A 7 GPVGWQCPGCTFINKPTRPGCEMCCRARPEA 37 (52)
T ss_dssp CSSSBCCTTTCCCBCTTCSSCSSSCCCCCTT
T ss_pred CCCCccCCCcccccCCCCCeeCCCCCcCCcc
Confidence 4447999999999999999999999999754
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.36 E-value=3.6e-07 Score=94.57 Aligned_cols=86 Identities=20% Similarity=0.133 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhccccccccchhhhHHHhhcCCCccchhccccccccccccceEEEEEEEEecC----
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLGRITQKQMHKYEKEAKLQGKGSFAYAWALDESAEERERGITMTVAVAYFDS---- 341 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~~i~~~~v~~~~~~a~~~~~~s~~~~~~~d~~~~e~~~GiTi~~~~~~~~~---- 341 (471)
..+|+|+|.+|||||||+|+|++......... ......+..|. ..+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~----------------------p~tTi~p~~G~------v~v~~~r~~ 71 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANY----------------------PYATIDPEEAK------VAVPDERFD 71 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC----------------------SSCCCCTTEEE------EEECCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCC----------------------Cceeecceeee------eeeCCcchh
Confidence 46799999999999999999997432111100 00011111111 00100
Q ss_pred -----------CCeEEEEEeCCCCC-------CchhhhhhccccCCEEEEEEeCCC
Q 012085 342 -----------KNYHVVVLDSPGHK-------DFVPNMISGATQSDAAILVIDASV 379 (471)
Q Consensus 342 -----------~~~~l~LIDTPG~e-------~f~~~~~~~l~~aD~vIlVVDas~ 379 (471)
-...+.+||+||.. .+...+...++.+|++++|+|+..
T Consensus 72 ~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 72 WLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred hhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 02368999999943 245567778899999999999874
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.33 E-value=7.7e-07 Score=93.25 Aligned_cols=66 Identities=27% Similarity=0.430 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCCCchhhh------hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC-CeEEEEEeC
Q 012085 342 KNYHVVVLDSPGHKDFVPNM------ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV-DQLIVAVNK 414 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~------~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v-p~IIVVvNK 414 (471)
.++.++||||||........ ...+..+|.++||+|+..+. .....+..+.. .+ +...+|+||
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~----------~~~~~~~~~~~-~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ----------QAGIQAKAFKE-AVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG----------GHHHHHHHHHT-TSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH----------HHHHHHHHHhh-cccCCeEEEEeC
Confidence 56789999999965432222 12233689999999998551 11122222222 24 447899999
Q ss_pred CCCC
Q 012085 415 MDAV 418 (471)
Q Consensus 415 iDl~ 418 (471)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9986
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.32 E-value=1.1e-06 Score=87.66 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHH
Q 012085 354 HKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLG 433 (471)
Q Consensus 354 ~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~ 433 (471)
++++......++..+|++|+|+|++.+.+ + +. ....++..+...++| +|+|+||+|+... ..++ ..+.+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~--s---~~-~l~~~l~~~~~~~~~-~ilV~NK~DL~~~--~~v~-~~~~~~ 135 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEF--N---NY-LLDNMLVVYEYFKVE-PVIVFNKIDLLNE--EEKK-ELERWI 135 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTC--C---HH-HHHHHHHHHHHTTCE-EEEEECCGGGCCH--HHHH-HHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCC--C---HH-HHHHHHHHHHhCCCC-EEEEEEcccCCCc--cccH-HHHHHH
Confidence 67777777778999999999999997621 1 22 223344455566776 8999999999742 2111 122334
Q ss_pred HHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 434 TFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 434 ~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
.+.+..+ .+++++||++|+|+.+++.
T Consensus 136 ~~~~~~g-----~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 136 SIYRDAG-----YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHTT-----CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHCC-----CeEEEEECCCCCCHHHHHh
Confidence 4444444 3789999999999988754
No 223
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=98.31 E-value=2.7e-07 Score=71.00 Aligned_cols=30 Identities=27% Similarity=0.616 Sum_probs=27.1
Q ss_pred CceeecccccCCCCccccccccCCCCCccc
Q 012085 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLV 78 (471)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~ 78 (471)
..|.|+.|||.|+.+...||||+..|...+
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 369999999999999999999999997643
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.27 E-value=1.1e-06 Score=92.01 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCeEEEEEeCCCCCC------chhhhhh--ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 342 KNYHVVVLDSPGHKD------FVPNMIS--GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~------f~~~~~~--~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.+..++||||||... +...+.. ....++.++||+|+..+. .....+..+...- +...||+|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq----------~a~~~a~~f~~~~-~~~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ----------KAYDLASRFHQAS-PIGSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG----------GGHHHHHHHHHHC-SSEEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch----------HHHHHHHHHhccc-CCcEEEEe
Confidence 467899999999544 2222211 122469999999998551 1122223333221 23688999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLV 460 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~ 460 (471)
|+|.... . ..+.. .....+ +||..++. |++++
T Consensus 247 KlD~~a~-~---G~als----~~~~~g-----~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 247 KMDGTAK-G---GGALS----AVVATG-----ATIKFIGT--GEKID 278 (433)
T ss_dssp CGGGCSC-H---HHHHH----HHHHHT-----CEEEEEEC--CSSSS
T ss_pred ccccccc-c---hHHHH----HHHHHC-----CCEEEEEC--CCChH
Confidence 9998632 1 11122 222223 46777775 88885
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=1.9e-05 Score=78.64 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=54.7
Q ss_pred CCeEEEEEeCCCCCC--chhhhh------hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEe
Q 012085 342 KNYHVVVLDSPGHKD--FVPNMI------SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVN 413 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~--f~~~~~------~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvN 413 (471)
.++.++||||||... ...... ..+..+|.+++|+|+..+ + .....+..+.. ..+-..+|+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~-~~~~~~~~~~~-~~~i~gvVln 247 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------Q-KAYDLASKFNQ-ASKIGTIIIT 247 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------G-GHHHHHHHHHH-TCTTEEEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------H-HHHHHHHHHHh-hCCCCEEEEe
Confidence 567899999999766 322222 234569999999999743 1 11222232332 2443678999
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 414 KMDAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 414 KiDl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|+|.... .. .+..+....+ +++..++ .|+++.+.
T Consensus 248 k~D~~~~----~g----~~~~~~~~~~-----~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 248 KMDGTAK----GG----GALSAVAATG-----ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp CGGGCTT----HH----HHHHHHHTTT-----CCEEEEE--CSSSTTCE
T ss_pred CCCCCcc----hH----HHHHHHHHHC-----cCEEEEe--CCCChhhc
Confidence 9997532 11 1222333333 4566665 68888643
No 226
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.14 E-value=1.6e-06 Score=82.63 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=59.8
Q ss_pred CCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHH---HHHHHh----cCCCeEEEEEeCC-CCCCCChhh
Q 012085 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREH---AQLIRS----FGVDQLIVAVNKM-DAVQYSKDR 424 (471)
Q Consensus 353 G~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~---l~ll~~----~~vp~IIVVvNKi-Dl~~~~~e~ 424 (471)
||..++..|..|+..+|++|||||+++... + ....|+ ..++.+ .++| ++|++||. |+..+- .
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R------~-eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am--s 180 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR------H-EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM--P 180 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC------C-CHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC--C
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH------H-HHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC--C
Confidence 799999999999999999999999996521 1 123333 333322 2455 99999995 776432 2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 425 FDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 425 ~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..++.+.|. |... ...+.|.+|||++|+||.+.+
T Consensus 181 ~~EI~e~L~--L~~l---~R~W~Iq~csA~TGeGL~EGL 214 (227)
T 3l82_B 181 CFYLAHELH--LNLL---NHPWLVQDTEAETLTGFLNGI 214 (227)
T ss_dssp HHHHHHHTT--GGGG---CSCEEEEEEETTTCTTHHHHH
T ss_pred HHHHHHHcC--CcCC---CCCEEEEEeECCCCcCHHHHH
Confidence 234444443 2222 246899999999999998743
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.10 E-value=1.5e-06 Score=85.77 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|+|+|.+|+|||||+|+|++..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45789999999999999999999643
No 228
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.02 E-value=7.4e-06 Score=82.74 Aligned_cols=93 Identities=19% Similarity=0.225 Sum_probs=52.1
Q ss_pred CeEEEEEeCCCCCCchhhhhhc------cccCCEEEEEEeCCCCccccccchhhhHHHHHHHHH-HhcCCCeEEEEEeCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISG------ATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLI-RSFGVDQLIVAVNKM 415 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~------l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll-~~~~vp~IIVVvNKi 415 (471)
+..+.++||+|........... .-.+|-.++|+|+..+ ....+.+..+ ...++. +|++||+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~----------~~~~~~~~~~~~~~~it--~iilTKl 278 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG----------NAIVEQARQFNEAVKID--GIILTKL 278 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT----------THHHHHHHHHHHHSCCC--EEEEECG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH----------HHHHHHHHHHHHhcCCC--EEEEeCc
Confidence 3457889999964432222211 1237899999998855 1222233333 344544 7889999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 416 DAVQYSKDRFDSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 416 Dl~~~~~e~~eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
|....-. . +...+...+ .++..++ +|+++.++
T Consensus 279 D~~a~~G----~----~l~~~~~~~-----~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADARGG----A----ALSISYVID-----APILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSCCH----H----HHHHHHHHT-----CCEEEEE--CSSSTTCE
T ss_pred CCccchh----H----HHHHHHHHC-----CCEEEEe--CCCCcccc
Confidence 9743211 1 122333333 3667766 88888553
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.02 E-value=2.9e-06 Score=92.13 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=23.6
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.+.++|+|+|.+|+|||||+|+|+|..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 456789999999999999999999753
No 230
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.95 E-value=5.2e-06 Score=82.54 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=64.6
Q ss_pred CCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----cCCCeEEEEEeC-CCCCCCChhhH
Q 012085 351 SPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----FGVDQLIVAVNK-MDAVQYSKDRF 425 (471)
Q Consensus 351 TPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~~vp~IIVVvNK-iDl~~~~~e~~ 425 (471)
..||..++..+..|+..+|++|||||+++... ++ ......++..++.+ .++| ++|++|| .|+.++- ..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR---le-ak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am--s~ 266 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR---HE-WQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM--PC 266 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC---CC-HHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC--CH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH---HH-HHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC--CH
Confidence 35799999999999999999999999997632 11 11111222233321 3666 9999996 5887532 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCcccc
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~ 462 (471)
.++.+.|.- ... . ..+.|.+|||++|+||.+.
T Consensus 267 ~EI~e~L~L--~~l--~-r~W~Iq~csA~tGeGL~EG 298 (312)
T 3l2o_B 267 FYLAHELHL--NLL--N-HPWLVQDTEAETLTGFLNG 298 (312)
T ss_dssp HHHHHHTTG--GGG--C-SCEEEEEEETTTCTTHHHH
T ss_pred HHHHHHcCC--ccC--C-CcEEEEecccCCCcCHHHH
Confidence 344444432 222 2 4688999999999999874
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.92 E-value=5.3e-06 Score=84.97 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=65.4
Q ss_pred EEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhH
Q 012085 346 VVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRF 425 (471)
Q Consensus 346 l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~ 425 (471)
+.-++++ +++|..........++++|+|+|+.+... ....++.++ ++..|+|+|+||+|+.... ...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--------s~~~~l~~~---l~~~piilV~NK~DLl~~~-~~~ 117 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--------SFIPGLPRF---AADNPILLVGNKADLLPRS-VKY 117 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--------GCCSSHHHH---CTTSCEEEEEECGGGSCTT-CCH
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--------chhhHHHHH---hCCCCEEEEEEChhcCCCc-cCH
Confidence 3344444 78888888777788999999999997621 111111222 2233499999999998532 223
Q ss_pred HHHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 426 DSIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 426 eei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+.+.+.+...++..|+.. ..++++||++|.|+.++..
T Consensus 118 ~~~~~~l~~~~~~~g~~~--~~v~~iSA~~g~gi~~L~~ 154 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCP--VDVCLVSAAKGIGMAKVME 154 (369)
T ss_dssp HHHHHHHHHHHHTTTCCC--SEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCc--ccEEEEECCCCCCHHHHHH
Confidence 445556666667777632 3679999999999987653
No 232
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.91 E-value=1.2e-05 Score=79.26 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=58.9
Q ss_pred EEeCCCCC-CchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHH
Q 012085 348 VLDSPGHK-DFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFD 426 (471)
Q Consensus 348 LIDTPG~e-~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~e 426 (471)
|-..|||. .....+...+..+|++|+|+|+..+....+ ..+.+++ .++ |+|+|+||+|+.. ....
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--------~~l~~~l--~~k-p~ilVlNK~DL~~--~~~~- 68 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--------PMIEDIL--KNK-PRIMLLNKADKAD--AAVT- 68 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--------HHHHHHC--SSS-CEEEEEECGGGSC--HHHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--------HHHHHHH--CCC-CEEEEEECcccCC--HHHH-
Confidence 44579986 466778889999999999999997733211 1122222 234 4899999999984 2222
Q ss_pred HHHHHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 427 SIKVQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 427 ei~~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
+....+++..+ ++++++||++|.|+.++.
T Consensus 69 ---~~~~~~~~~~g-----~~~i~iSA~~~~gi~~L~ 97 (282)
T 1puj_A 69 ---QQWKEHFENQG-----IRSLSINSVNGQGLNQIV 97 (282)
T ss_dssp ---HHHHHHHHTTT-----CCEEECCTTTCTTGGGHH
T ss_pred ---HHHHHHHHhcC-----CcEEEEECCCcccHHHHH
Confidence 22233333333 367999999999998754
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.82 E-value=1.2e-05 Score=82.41 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=64.5
Q ss_pred CCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHH
Q 012085 353 GHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQL 432 (471)
Q Consensus 353 G~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L 432 (471)
..++|...+....+.++++|+|+|+.+. ......++.+++ .+.| +|+|+||+|+.... ...+.+.+.+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~--------~~~~~~~l~~~~--~~~p-~ilV~NK~DL~~~~-~~~~~~~~~l 122 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDF--------NGSWLPGLHRFV--GNNK-VLLVGNKADLIPKS-VKHDKVKHWM 122 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSH--------HHHCCTTHHHHS--SSSC-EEEEEECGGGSCTT-SCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCC--------cccHHHHHHHHh--CCCc-EEEEEEChhcCCcc-cCHHHHHHHH
Confidence 3567777777778889999999999853 111111111111 1444 99999999997432 2234455556
Q ss_pred HHHHHhcCCCCCCccEEEEecccCCCccccCC
Q 012085 433 GTFLRSCGFKDASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 433 ~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~~ 464 (471)
...++..|+.. ..++++||++|.|+.+++.
T Consensus 123 ~~~~~~~g~~~--~~v~~iSA~~g~gi~~L~~ 152 (368)
T 3h2y_A 123 RYSAKQLGLKP--EDVFLISAAKGQGIAELAD 152 (368)
T ss_dssp HHHHHHTTCCC--SEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHcCCCc--ccEEEEeCCCCcCHHHHHh
Confidence 66666677632 3689999999999987653
No 234
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.81 E-value=5.4e-06 Score=81.01 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
++|+|+|.+|+|||||+|+|++.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 57999999999999999999964
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.74 E-value=4e-05 Score=81.46 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+.-.|+|+|..|+|||||++.|.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34579999999999999999998764
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.71 E-value=2.8e-05 Score=81.38 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCCCchhhhhh------ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMIS------GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKM 415 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~------~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKi 415 (471)
.++.++||||||...+...... .+..++.+++|+|+..+ .+ .......+-...++ .-||+||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g---~~------~~~~~~~f~~~l~i--~gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG---QD------AANTAKAFNEALPL--TGVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC---TT------HHHHHHHHHHHSCC--CCEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh---HH------HHHHHHHHhccCCC--eEEEEecC
Confidence 4678999999996554322222 24468999999999855 11 11111112222332 24689999
Q ss_pred CCC
Q 012085 416 DAV 418 (471)
Q Consensus 416 Dl~ 418 (471)
|..
T Consensus 251 D~~ 253 (433)
T 2xxa_A 251 DGD 253 (433)
T ss_dssp TSS
T ss_pred CCC
Confidence 975
No 237
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=97.63 E-value=1.7e-05 Score=53.16 Aligned_cols=29 Identities=21% Similarity=0.609 Sum_probs=25.7
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
..|.|-|+.||+-|..+...|.+|.++|.
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpkP 32 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPKP 32 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCCC
Confidence 45789999999999999999999999984
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.53 E-value=6.4e-05 Score=81.87 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|+.|+|||||++.|+|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999863
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.48 E-value=0.00024 Score=71.12 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=57.4
Q ss_pred hccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCC
Q 012085 363 SGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFK 442 (471)
Q Consensus 363 ~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~ 442 (471)
..+..+|.+|+|+|+..+.+. . .....++..+...+++ .|||+||+|+.... ...+..+.+...+...|+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~-----~-~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~--~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFS-----T-ALLDRFLVLVEANDIQ-PIICITKMDLIEDQ--DTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCC-----H-HHHHHHHHHHHTTTCE-EEEEEECGGGCCCH--HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhCCEEEEEEeCCCCCCC-----H-HHHHHHHHHHHHCCCC-EEEEEECCccCchh--hhHHHHHHHHHHHHhCCC-
Confidence 357789999999999976321 1 2334444445566777 68999999998531 110112333444444554
Q ss_pred CCCccEEEEecccCCCccccCC
Q 012085 443 DASLTWIPLSALENQNLVTAPD 464 (471)
Q Consensus 443 ~~~i~IIpvSAktG~gI~e~~~ 464 (471)
+++++||.+|.|+.+++.
T Consensus 152 ----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 ----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp ----CEEECCHHHHTTCTTTGG
T ss_pred ----eEEEEecCCCCCHHHHHh
Confidence 679999999999887653
No 240
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.43 E-value=0.00015 Score=72.35 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.-.|+|+|+.|+|||||++.|.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34699999999999999999987643
No 241
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.37 E-value=5.4e-05 Score=73.83 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=55.0
Q ss_pred CCCCCC-chhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHH
Q 012085 351 SPGHKD-FVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIK 429 (471)
Q Consensus 351 TPG~e~-f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~ 429 (471)
-|||.. ....+...+..+|++|+|+|+..+....... + . ++ ++| .|+|+||+|++. ....+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-l----~----ll---~k~-~iivlNK~DL~~--~~~~~~~- 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-V----D----FS---RKE-TIILLNKVDIAD--EKTTKKW- 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-S----C----CT---TSE-EEEEEECGGGSC--HHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-H----H----hc---CCC-cEEEEECccCCC--HHHHHHH-
Confidence 378764 4457788899999999999999874432211 1 1 11 444 899999999984 2222222
Q ss_pred HHHHHHHHhcCCCCCCccEEEEecccCCCccccC
Q 012085 430 VQLGTFLRSCGFKDASLTWIPLSALENQNLVTAP 463 (471)
Q Consensus 430 ~~L~~~l~~~g~~~~~i~IIpvSAktG~gI~e~~ 463 (471)
..+++..++ ++ ++||++|.|+.++.
T Consensus 68 ---~~~~~~~g~-----~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 68 ---VEFFKKQGK-----RV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp ---HHHHHHTTC-----CE-EECCTTSCHHHHHH
T ss_pred ---HHHHHHcCC-----eE-EEECCCCcCHHHHH
Confidence 333444443 56 99999999987754
No 242
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.34 E-value=0.0011 Score=60.56 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=46.3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC----CeEEEEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV----DQLIVAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v----p~IIVVvNKiDl 417 (471)
..+.++|||||+.. .......+..+|.+|+++..... - ......++.++..+. .++.+|+|+++.
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~--------~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL--------D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT--------T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH--------H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 35789999999865 34555667779999999988854 2 334555566655431 237899999995
Q ss_pred C
Q 012085 418 V 418 (471)
Q Consensus 418 ~ 418 (471)
.
T Consensus 143 ~ 143 (206)
T 4dzz_A 143 M 143 (206)
T ss_dssp T
T ss_pred C
Confidence 4
No 243
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=0.00015 Score=52.32 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=30.4
Q ss_pred cccCCCCceeecccccCCCCccccccccCCCCCcc
Q 012085 43 QETSKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (471)
Q Consensus 43 ~~~~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (471)
+-.+..|.|-|+.|++.|......|-+|++++..-
T Consensus 4 ~~~~~~g~W~C~~C~v~N~a~~~kC~aCetpKpgs 38 (47)
T 2ebq_A 4 GSSGVIGTWDCDTCLVQNKPEAIKCVACETPKPGT 38 (47)
T ss_dssp SCCCCSSSEECSSSCCEECSSCSBCSSSCCBCSCS
T ss_pred CcCCCCCceECCeeeccCccCCceecCcCCCCCCC
Confidence 33447889999999999999999999999999653
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.23 E-value=0.00087 Score=66.88 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+||||++..|.+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHH
Confidence 4569999999999999999998764
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.17 E-value=0.00092 Score=69.75 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.4
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+...|+|+|..|+||||++..|.+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999987643
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.14 E-value=0.00053 Score=68.02 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|..|+||||++..|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998654
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.14 E-value=0.00041 Score=69.60 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|..|+||||++..|.+...
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999999986543
No 248
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.00 E-value=0.0015 Score=68.53 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhh
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..+..-|+|+|.+++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345567999999999999999999975
No 249
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=96.98 E-value=0.00011 Score=78.72 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred ceeecccccCCCCccccccccCCCCCc
Q 012085 50 VWSCAICTYDNEEGMSVCDICGVLRTP 76 (471)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (471)
--+|+.|||-||++|..|||||++-..
T Consensus 180 ~~~CP~CTF~NHPsl~~CEiCg~~L~~ 206 (566)
T 1w7p_D 180 ENICPACTFANHPQIGNCEICGHRLPN 206 (566)
T ss_dssp ---------------------------
T ss_pred CCCCCcccccCChhhhcccccCCcCCC
Confidence 467999999999999999999987644
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.98 E-value=0.0035 Score=61.97 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|..|+||||++..|.+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 251
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=96.95 E-value=0.00027 Score=47.56 Aligned_cols=29 Identities=21% Similarity=0.670 Sum_probs=25.2
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
..|.|.|+.|++.|..+...|-+|.+++.
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESAKP 32 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBC-
T ss_pred CCCceECCeeEeECccccCEEcccCCcCC
Confidence 46789999999999999999999999884
No 252
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.91 E-value=0.0023 Score=63.55 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
-.|+|+|..|+|||||++.|.+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998764
No 253
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.87 E-value=0.00061 Score=49.18 Aligned_cols=32 Identities=19% Similarity=0.573 Sum_probs=28.9
Q ss_pred CCCCceeecccccCCCCccccccccCCCCCcc
Q 012085 46 SKPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (471)
Q Consensus 46 ~~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (471)
...|.|-|+.|.+.|......|-+|+++|..-
T Consensus 7 ~~~gsW~C~~C~v~N~a~~~kC~aC~~pkpg~ 38 (47)
T 2ebr_A 7 GPEGSWDCELCLVQNKADSTKCLACESAKPGT 38 (47)
T ss_dssp SCCSSCCCSSSCCCCCSSCSBCSSSCCBCCCC
T ss_pred CCCCeeECCeeecCCcCCcceecCcCCCCCCC
Confidence 36789999999999999999999999999654
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0016 Score=66.39 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.-.|+|+|..|+|||||++.|.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3469999999999999999998764
No 255
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.44 E-value=0.012 Score=54.60 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=45.6
Q ss_pred CCeEEEEEeCCCC-CCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc-CCCeEEEEEeCCCCC
Q 012085 342 KNYHVVVLDSPGH-KDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF-GVDQLIVAVNKMDAV 418 (471)
Q Consensus 342 ~~~~l~LIDTPG~-e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~-~vp~IIVVvNKiDl~ 418 (471)
..+.++|||||+. ... .....+..+|.+|+++..... -.......++.++.. +.+ +.+|+|+++..
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDAL--------ALDALMLTIETLQKLGNNR-FRILLTIIPPY 133 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHH--------HHHHHHHHHHHHHHTCSSS-EEEEECSBCCT
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCch--------hHHHHHHHHHHHHhccCCC-EEEEEEecCCc
Confidence 4568999999986 432 344566789999999988733 123344555666653 555 88999999875
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.26 E-value=0.022 Score=55.66 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiDl 417 (471)
..+.++|||||+..... .+...+..+|.+|+|+..... -.......++.++.. +.+.+-+|+|+++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFD--------SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHH--------HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999854322 223456789999999987632 112334445555543 33323389999984
No 257
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.25 E-value=0.0099 Score=60.57 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=50.8
Q ss_pred ccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCChhhHHHHHHHHHHHHHhcCCCC
Q 012085 364 GATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYSKDRFDSIKVQLGTFLRSCGFKD 443 (471)
Q Consensus 364 ~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~~e~~eei~~~L~~~l~~~g~~~ 443 (471)
.+..+|.+++|.. ..+.+ . ......++..+...+++ .|||+||+|+... +..+.+ +.+...+...|+
T Consensus 127 i~anvD~v~iv~a-~~P~~----~--~~~i~r~L~~a~~~~~~-~iivlNK~DL~~~--~~~~~~-~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 127 IAANIDQIVIVSA-ILPEL----S--LNIIDRYLVGCETLQVE-PLIVLNKIDLLDD--EGMDFV-NEQMDIYRNIGY-- 193 (358)
T ss_dssp EEECCCEEEEEEE-STTTC----C--HHHHHHHHHHHHHHTCE-EEEEEECGGGCCH--HHHHHH-HHHHHHHHTTTC--
T ss_pred HHhcCCEEEEEEe-CCCCC----C--HHHHHHHHHHHHhcCCC-EEEEEECccCCCc--hhHHHH-HHHHHHHHhCCC--
Confidence 4577999987754 44421 1 12334444455567777 6999999999842 221112 222333445554
Q ss_pred CCccEEEEecccCCCcccc
Q 012085 444 ASLTWIPLSALENQNLVTA 462 (471)
Q Consensus 444 ~~i~IIpvSAktG~gI~e~ 462 (471)
+++++||.+|.|+.++
T Consensus 194 ---~v~~~Sa~~~~gl~~L 209 (358)
T 2rcn_A 194 ---RVLMVSSHTQDGLKPL 209 (358)
T ss_dssp ---CEEECBTTTTBTHHHH
T ss_pred ---cEEEEecCCCcCHHHH
Confidence 5799999999998764
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.19 E-value=0.00067 Score=71.27 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=21.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+..|+++|.+|+||||+.++|...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999843
No 259
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=96.04 E-value=0.002 Score=53.78 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=25.8
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
.+|.|.|+.|++.|......|.+|+++|.
T Consensus 69 ~~g~W~C~~C~~~N~~~~~~C~aC~tpkP 97 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNKPEAVKCVACETPKP 97 (98)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBCC
T ss_pred CCCcccCCcCcCCChhhcceecccCCCCC
Confidence 46789999999999999999999999984
No 260
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.78 E-value=0.0015 Score=65.16 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|+|++|+|||||+|.|++..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 369999999999999999998643
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.52 E-value=0.0056 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+++|+|++|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999765
No 262
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.41 E-value=0.0072 Score=45.30 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=27.0
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
..|.|-|+.|...|......|..|++++.
T Consensus 28 ~~GsWeC~~C~V~N~a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCCVSNNAEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSCCCCCSSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeEccCccCCceeeEcCCcCC
Confidence 67899999999999999999999999874
No 263
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.24 E-value=0.0073 Score=54.58 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998754
No 264
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=95.24 E-value=0.0032 Score=52.53 Aligned_cols=31 Identities=26% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCceeecccccCCCCccccccccCCCCCcc
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRTPL 77 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~~~ 77 (471)
....|.|+.|+|.|..+...|.+|+.+|...
T Consensus 6 ~~~~W~C~~C~~~N~~~~~kC~aC~~pr~~~ 36 (98)
T 3gj7_B 6 AGSSWQCDTCLLQNKVTDNKCIACQAAKLPL 36 (98)
T ss_dssp -------------------------------
T ss_pred CCCcccCCccccCChhhcccccccCCCCCCC
Confidence 3456999999999999999999999999654
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.18 E-value=0.0078 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999998754
No 266
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.95 E-value=0.0098 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48999999999999999999764
No 267
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.88 E-value=0.011 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
|+|+|++|+|||||++.|++..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999764
No 268
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.85 E-value=0.011 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999765
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.81 E-value=0.015 Score=53.77 Aligned_cols=26 Identities=42% Similarity=0.425 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|++|+|||||++.|.+...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34699999999999999999987653
No 270
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=94.76 E-value=0.01 Score=39.25 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=26.2
Q ss_pred CCceeecccccCCCCccccccccCCCCC
Q 012085 48 PRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
+|-|.|..|.+-|...-..|-.||++|.
T Consensus 3 ~gDW~C~~C~~~Nfa~r~~C~~C~~pr~ 30 (32)
T 2lk0_A 3 FEDWLCNKCCLNNFRKRLKCFRCGADKF 30 (32)
T ss_dssp CSEEECTTTCCEEETTCCBCTTTCCBTT
T ss_pred CCCCCcCcCcCCcChhcceecCCCCcCC
Confidence 5779999999999999999999999984
No 271
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.75 E-value=0.1 Score=49.57 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=38.5
Q ss_pred CCeEEEEEeCCCCCCchhhh-hhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhc----CCCeEEEEEeCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNM-ISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSF----GVDQLIVAVNKMD 416 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~-~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~----~vp~IIVVvNKiD 416 (471)
..+.++||||||........ ......+|.+|+|+..... + + ......++.+... +.+.+-+|+|+.+
T Consensus 114 ~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~----s---~-~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~ 185 (269)
T 1cp2_A 114 DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMM----A---L-YAANNISKGIQKYAKSGGVRLGGIICNSRK 185 (269)
T ss_dssp TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHH----H---H-HHHHHHHHHHHHHBTTBBCEEEEEEEECCS
T ss_pred cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchh----h---H-HHHHHHHHHHHHHHhcCCCcEEEEEeecCC
Confidence 34789999999853221111 1112469999999987732 1 1 1222333334332 4443568999987
Q ss_pred C
Q 012085 417 A 417 (471)
Q Consensus 417 l 417 (471)
.
T Consensus 186 ~ 186 (269)
T 1cp2_A 186 V 186 (269)
T ss_dssp S
T ss_pred c
Confidence 4
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.68 E-value=0.015 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+...|+|+|++|+|||||+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344599999999999999999997643
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.68 E-value=0.013 Score=54.91 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.6
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
++|+|++|+|||||++.|++..
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999765
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.016 Score=51.99 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45999999999999999999875
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.47 E-value=0.015 Score=54.89 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
-++|+|++|+|||||++.|++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 489999999999999999998654
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.47 E-value=0.018 Score=52.79 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|..|+|||||++.|.+..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999988643
No 277
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.43 E-value=0.023 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+|||||++.|.+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 4699999999999999999986544
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.31 E-value=0.019 Score=50.79 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+|||||++.|.+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999987654
No 279
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.22 E-value=0.022 Score=51.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|.+|+|||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 359999999999999999998754
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.22 E-value=0.018 Score=58.64 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++|+|++|+|||||+|.|++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 599999999999999999997543
No 281
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.16 E-value=0.018 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998754
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.12 E-value=0.023 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
..|+|+|.+|+|||||++.|.+..+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45999999999999999999876543
No 283
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.09 E-value=0.022 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+.|+|+|.+|+||||+.+.| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 35999999999999999999 4444
No 284
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.07 E-value=0.14 Score=53.61 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.3
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhh
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg 288 (471)
++..-|+|+|..++|||+|+|.|+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHHH
Confidence 4556788999999999999997763
No 285
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.07 E-value=0.021 Score=52.86 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
-|+|+|++|+|||||++.|++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 49999999999999999998764
No 286
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.03 E-value=0.022 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999754
No 287
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=94.02 E-value=0.033 Score=36.99 Aligned_cols=29 Identities=24% Similarity=0.634 Sum_probs=26.6
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
.+|-|.|+.|-+-|...-..|-+|+.+|.
T Consensus 3 ~~gDW~C~~C~~~Nfa~R~~C~~C~~pk~ 31 (33)
T 2k1p_A 3 SANDWQCKTCSNVNWARRSECNMCNTPKY 31 (33)
T ss_dssp SSSSCBCSSSCCBCCTTCSBCSSSCCBTT
T ss_pred CCCCcccCCCCCccccccccccccCCcCC
Confidence 35679999999999999999999999985
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.01 E-value=0.026 Score=50.46 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
++..|+|+|.+|+||||+...|....+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999875544
No 289
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.00 E-value=0.025 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+.++|....+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999976543
No 290
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.97 E-value=0.022 Score=53.82 Aligned_cols=23 Identities=43% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.97 E-value=0.024 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+|||||++.|....+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999986644
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.96 E-value=0.02 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
-++|+|++|+|||||++.+++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 389999999999999998653
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.94 E-value=0.025 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999976444
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.88 E-value=0.027 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|+.|+|||||++.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999975
No 295
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.83 E-value=0.027 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+++.|.+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987654
No 296
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.82 E-value=0.028 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|.+|+||||+.++|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 459999999999999999998654
No 297
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.80 E-value=0.025 Score=53.87 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998753
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.78 E-value=0.03 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCchhHhHHHhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg 288 (471)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4599999999999999999985
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.77 E-value=0.026 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.|+|+|.+|+|||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 4899999999999999999864
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.74 E-value=0.028 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+|||||++.|...
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999833
No 301
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.73 E-value=0.026 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999999764
No 302
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.72 E-value=0.028 Score=53.80 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999764
No 303
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.70 E-value=0.077 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=21.8
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhh
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
....-|+|+|.+|+|||||.++|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34466999999999999999999843
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.69 E-value=0.026 Score=51.83 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|.+|+|||||+++|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 459999999999999999998654
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.68 E-value=0.035 Score=52.61 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|..|+|||||++.|.+..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34699999999999999999988654
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.67 E-value=0.03 Score=50.48 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+++.|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 599999999999999999986554
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.66 E-value=0.028 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 308
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.65 E-value=0.028 Score=53.96 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 309
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.64 E-value=0.026 Score=54.70 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 310
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.64 E-value=0.026 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|++|+|||||+|.|.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 58999999999999999999754
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.63 E-value=0.025 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=15.1
Q ss_pred EEEEEcCCCCCchhHhHHHh-hhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLL-FLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLl-g~~ 290 (471)
.|+|+|++|+|||||++.|. +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 48999999999999999998 754
No 312
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.62 E-value=0.034 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|.|.+|+||||+.+.|....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999976544
No 313
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.60 E-value=0.029 Score=54.12 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999764
No 314
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.58 E-value=0.027 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
++|+|+.|+|||||++.|+|..
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999999754
No 315
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.56 E-value=0.029 Score=51.80 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
|+|+|++||||+||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999998653
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.53 E-value=0.034 Score=51.07 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975544
No 317
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.53 E-value=0.032 Score=53.58 Aligned_cols=22 Identities=36% Similarity=0.247 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|+.|+|||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 318
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.52 E-value=0.029 Score=54.56 Aligned_cols=23 Identities=43% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999754
No 319
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.50 E-value=0.031 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 59999999999999999999764
No 320
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.49 E-value=0.031 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
No 321
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=93.49 E-value=0.026 Score=46.31 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=25.8
Q ss_pred CCCceeecccccCCCCccccccccCCCCC
Q 012085 47 KPRVWSCAICTYDNEEGMSVCDICGVLRT 75 (471)
Q Consensus 47 ~~~~w~c~~c~~~n~~~~~~c~~c~~~r~ 75 (471)
.+|-|.|+.|++.|..+...|..|+++|.
T Consensus 62 ~~g~W~C~~C~~~N~a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNKADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCChhhcccccccCCCCC
Confidence 56889999999999999999999999884
No 322
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.48 E-value=0.03 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999864
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.45 E-value=0.038 Score=52.59 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=22.9
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+++.|+|+|.+|+||||+.+.|....+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456799999999999999999876444
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.45 E-value=0.031 Score=54.02 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999999764
No 325
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.44 E-value=0.033 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg 288 (471)
++|+|+|.+|+|||||.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 326
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.43 E-value=0.037 Score=50.89 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999975544
No 327
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.43 E-value=0.03 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|+.|+|||||++.|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999999754
No 328
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.42 E-value=0.038 Score=49.46 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999975543
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.37 E-value=0.039 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35699999999999999999975443
No 330
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.37 E-value=0.18 Score=46.61 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=47.1
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.+.++|||||+... ......+..+|.+|+|+..... -.......++.+...+.+.+-+|+|+++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEIS--------CLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHH--------HHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcc--------cHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46799999998543 4455677889999999987732 122344556666666766678899999865
No 331
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.36 E-value=0.033 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 48999999999999999999754
No 332
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.35 E-value=0.034 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|+|++|+|||||+|.|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 358999999999999999998 43
No 333
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.35 E-value=0.035 Score=53.92 Aligned_cols=22 Identities=50% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|+.|+|||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 334
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.32 E-value=0.034 Score=53.56 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999764
No 335
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.31 E-value=0.04 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+...|....+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999986554
No 336
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.30 E-value=0.034 Score=54.14 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999764
No 337
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.29 E-value=0.034 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.29 E-value=0.042 Score=50.20 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|.+|+|||||++.|.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998765
No 339
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=93.25 E-value=0.015 Score=47.69 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=0.0
Q ss_pred CCceeecccccCCCCccccccccCCCCCc
Q 012085 48 PRVWSCAICTYDNEEGMSVCDICGVLRTP 76 (471)
Q Consensus 48 ~~~w~c~~c~~~n~~~~~~c~~c~~~r~~ 76 (471)
+|.|.|..|++.|..+...|.+|+++|..
T Consensus 6 ~g~W~C~~C~~~N~~~~~~C~~C~~pkp~ 34 (92)
T 3gj8_B 6 VGSWECPVCCVSNKAEDSRCVSCTSEKPG 34 (92)
T ss_dssp -----------------------------
T ss_pred CcCCCCCcCCCEeccccceecccCCCCCC
Confidence 57899999999999999999999999954
No 340
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.23 E-value=0.041 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+|||||+++|+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45899999999999999999864
No 341
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.23 E-value=0.093 Score=48.68 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=47.5
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMD 416 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiD 416 (471)
..+.++|||||+.... .....+..+|.+|+|+..... -........+++...+++.+.+|+|+.+
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLN--------SIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHH--------HHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 5678999999985433 445567889999999988733 1233455556777778777899999998
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.20 E-value=0.035 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999764
No 343
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.19 E-value=0.035 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|++|+|||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999864
No 344
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.17 E-value=0.038 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHhC
Confidence 49999999999999999998743
No 345
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.15 E-value=0.19 Score=47.90 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEE-EEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLI-VAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~II-VVvNKiDl 417 (471)
..+.++|||||+...........+..+|.+|+|+...... .......++.++..+.+ ++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s--------~~~~~~~~~~l~~~~~~-~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT--------AVIVEKAINMAEETNTS-VLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC--------HHHHHHHHHHHHTTTCC-EEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch--------HHHHHHHHHHHHhCCCC-EEEEEECCCcc
Confidence 4678999999985443222222233689999998877441 13345556667777777 55 89999884
No 346
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.15 E-value=0.039 Score=49.05 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=17.9
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999975543
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.15 E-value=0.037 Score=53.63 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999998764
No 348
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.15 E-value=0.041 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+.+.|....+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999999999976544
No 349
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.11 E-value=0.047 Score=54.33 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+...|+|+|.+|+|||||++.|.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34569999999999999999998754
No 350
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.09 E-value=0.051 Score=49.67 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+|||||++.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4569999999999999999998754
No 351
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.05 E-value=0.038 Score=53.21 Aligned_cols=23 Identities=43% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999754
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.01 E-value=0.046 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCchhHhHHHhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg 288 (471)
+.|+|+|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.95 E-value=0.049 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+..+|....+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999975543
No 354
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.92 E-value=0.041 Score=51.25 Aligned_cols=21 Identities=19% Similarity=0.627 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
.++|+|++|+|||||++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999999983
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.92 E-value=0.051 Score=49.02 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..+|+|+|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999765
No 356
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.88 E-value=0.047 Score=48.72 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45699999999999999999975443
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.87 E-value=0.05 Score=48.81 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999975544
No 358
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.86 E-value=0.051 Score=49.04 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
++..|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999999865
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.86 E-value=0.06 Score=47.90 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+.+.|....+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999976544
No 360
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.85 E-value=0.056 Score=49.18 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=23.1
Q ss_pred ccceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 264 MTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 264 ~~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...+.|+|+|.+|+||||+.+.|....+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3446799999999999999999976544
No 361
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.83 E-value=0.025 Score=51.41 Aligned_cols=23 Identities=52% Similarity=0.726 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|.+|+|||||++.|++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999998653
No 362
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.83 E-value=0.042 Score=49.10 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|+|++|+|||||+..|.+..
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999998643
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.79 E-value=0.052 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+||||+++.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998654
No 364
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.77 E-value=0.051 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
...|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 365
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.77 E-value=0.051 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+.|+|+|.+|+||||+.+.|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999976544
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.75 E-value=0.057 Score=51.29 Aligned_cols=27 Identities=26% Similarity=0.089 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
++++|+|+|.+|+||||+..+|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999975543
No 367
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.74 E-value=0.071 Score=48.38 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.7
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+...|+|+|.+|+||||+.+.|....+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 345799999999999999999986544
No 368
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.73 E-value=0.049 Score=49.56 Aligned_cols=25 Identities=36% Similarity=0.231 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+||||+.+.|....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997543
No 369
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.046 Score=53.07 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999865
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.72 E-value=0.064 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
...|+|+|..|+|||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456999999999999999999876
No 371
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.60 E-value=0.033 Score=55.41 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|++..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 59999999999999999998754
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.54 E-value=0.042 Score=55.36 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
-+++|+|.+|+|||||++.|.+....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999986543
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.50 E-value=0.056 Score=50.30 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999976544
No 374
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.47 E-value=0.072 Score=47.79 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+...|+|+|.+|+||||+++.|....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999997554
No 375
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.41 E-value=0.052 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998864
No 376
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.40 E-value=0.063 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|++|+|||||++.|.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 377
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.38 E-value=0.064 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...++|+|..|+|||||++.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3468999999999999999999753
No 378
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=92.32 E-value=0.033 Score=43.80 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=20.5
Q ss_pred ceeecccccCCCCc---------cccccccCCCCC
Q 012085 50 VWSCAICTYDNEEG---------MSVCDICGVLRT 75 (471)
Q Consensus 50 ~w~c~~c~~~n~~~---------~~~c~~c~~~r~ 75 (471)
-|.|++|.|-|... +-.|..||+.+.
T Consensus 17 tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 17 TWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp EEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 49999999887644 446999998774
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.28 E-value=0.07 Score=53.41 Aligned_cols=29 Identities=38% Similarity=0.358 Sum_probs=24.0
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...++-|+|+|.+|+|||||++.|.+...
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567799999999999999999976543
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.26 E-value=0.061 Score=47.13 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976543
No 381
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.24 E-value=0.072 Score=52.38 Aligned_cols=27 Identities=30% Similarity=0.163 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+...|+|+|.+|+|||||++.|.+...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456799999999999999998876543
No 382
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.22 E-value=0.07 Score=48.87 Aligned_cols=25 Identities=44% Similarity=0.498 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+|||||++.|.+..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998643
No 383
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.19 E-value=0.071 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+|||||++.|....+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999984433
No 384
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.19 E-value=0.066 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+|||||+.+|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.11 E-value=0.069 Score=52.64 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|..|+|||||++.|.+...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35699999999999999999988643
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.07 E-value=0.054 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|++|+|||||++.|++..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999753
No 387
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.05 E-value=0.082 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+...|+|+|.+|+|||||..+|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999999999999997544
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.05 E-value=0.066 Score=49.35 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999976544
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.03 E-value=0.054 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 59999999999999999999643
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.02 E-value=0.061 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+.++|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976654
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.89 E-value=0.071 Score=47.56 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|.+|+||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
No 392
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.88 E-value=0.068 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+.+.|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999976544
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.88 E-value=0.078 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCchhHhHHHhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg 288 (471)
.+.|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 394
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.85 E-value=0.066 Score=47.55 Aligned_cols=24 Identities=42% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999976544
No 395
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.82 E-value=0.065 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999998764
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.81 E-value=0.075 Score=50.62 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+..|+|+|.+|+|||||.+.|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446799999999999999999986543
No 397
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.73 E-value=0.066 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 38999999999999999999864
No 398
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.73 E-value=0.073 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 59999999999999999998653
No 399
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=91.70 E-value=0.21 Score=47.11 Aligned_cols=66 Identities=15% Similarity=0.305 Sum_probs=46.2
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.+.++|||||+... ......+..+|.+|+|+..... -.......++.+...+.+.+-+|+|+++..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~--------~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEIS--------SITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHH--------HHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChh--------HHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 46899999998543 4455567789999999887632 122344555666666666677999999864
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.65 E-value=0.082 Score=47.40 Aligned_cols=23 Identities=35% Similarity=0.224 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|.|.+|+||||++++|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997654
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.63 E-value=0.039 Score=50.34 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|.+|+|||||++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997554
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.63 E-value=0.071 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999764
No 403
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=91.50 E-value=0.14 Score=36.41 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=27.4
Q ss_pred CCCceeec--ccccCCCCccccccccCCCCCc
Q 012085 47 KPRVWSCA--ICTYDNEEGMSVCDICGVLRTP 76 (471)
Q Consensus 47 ~~~~w~c~--~c~~~n~~~~~~c~~c~~~r~~ 76 (471)
.+|-|.|. .|.+-|...-..|-.|+++|..
T Consensus 11 ~~GDW~C~~~~C~~~Nfa~R~~C~~C~~pr~~ 42 (45)
T 1n0z_A 11 SDGDWICPDKKCGNVNFARRTSCDRCGREKTT 42 (45)
T ss_dssp CSSSCBCSSTTTCCBCCSSCSBCSSSCCBCCC
T ss_pred CCCCcCCCCCCCCCEEccccccccccCCcCCC
Confidence 57789999 8999999999999999999953
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.48 E-value=0.075 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 48999999999999999999864
No 405
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.46 E-value=0.08 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999999753
No 406
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.45 E-value=0.91 Score=45.43 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=48.1
Q ss_pred CCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCC-C---hhhHHHHHHHHHHHHHhcCCCC
Q 012085 368 SDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQY-S---KDRFDSIKVQLGTFLRSCGFKD 443 (471)
Q Consensus 368 aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~-~---~e~~eei~~~L~~~l~~~g~~~ 443 (471)
.+.+++|.-.... .....+..+..++..+++..-+|+|++..... . ..+.+.....+.++.+.++.
T Consensus 237 ~~~~vlV~~p~~~--------~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-- 306 (349)
T 3ug7_A 237 RTAFRLVVIPEEM--------SILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGD-- 306 (349)
T ss_dssp TEEEEEEECSSHH--------HHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTT--
T ss_pred CceEEEEECCCcc--------HHHHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCC--
Confidence 4678888766632 34566777888899999966889999976532 1 11222223444444444442
Q ss_pred CCccEEEEecccCCCc
Q 012085 444 ASLTWIPLSALENQNL 459 (471)
Q Consensus 444 ~~i~IIpvSAktG~gI 459 (471)
..+-.+|.....-.|+
T Consensus 307 ~~l~~iPl~~~e~~g~ 322 (349)
T 3ug7_A 307 KVIAYVPLLRTEAKGI 322 (349)
T ss_dssp SEEEEEECCSSCSCSH
T ss_pred CcEEEecCCCCCCCCH
Confidence 3344566665554454
No 407
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.43 E-value=0.09 Score=48.66 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
++|+|+|.+|+||||+.+.|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976544
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.40 E-value=0.077 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48999999999999999999864
No 409
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.40 E-value=0.094 Score=46.72 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|+|.+|+||||+++.|....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999998653
No 410
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.37 E-value=0.078 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 48999999999999999999764
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.33 E-value=0.25 Score=49.78 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=37.2
Q ss_pred EEEEEeCCCCC--CchhhhhhccccC-CEEEEEEeCCCCccc-----cccchhhhHHHHHHHHHHhcCCCeEEEE
Q 012085 345 HVVVLDSPGHK--DFVPNMISGATQS-DAAILVIDASVGSFE-----VGMNTAKGLTREHAQLIRSFGVDQLIVA 411 (471)
Q Consensus 345 ~l~LIDTPG~e--~f~~~~~~~l~~a-D~vIlVVDas~g~~e-----~~~~~l~~~~~e~l~ll~~~~vp~IIVV 411 (471)
.+.|.|+|+.. .+........+.- ..-++|||.-+.+.. .....+....+.+..+++++++| ||++
T Consensus 129 ~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vp-Vi~l 202 (338)
T 4a1f_A 129 KLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIP-IIAL 202 (338)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSC-EEEE
T ss_pred CeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCe-EEEE
Confidence 57888998742 1222222222222 677888886543221 11223445667777888899998 5544
No 412
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.32 E-value=0.079 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.253 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++|+|+.|+|||||++.|.|...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 389999999999999999998643
No 413
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=91.26 E-value=0.087 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.1
Q ss_pred EEEEcCCCCCchhHhHHHhhhcc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
|+|+|++|+|||||+++|.+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC
Confidence 99999999999999999997654
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.24 E-value=0.086 Score=46.94 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
-.+|+|+.|+|||||+.+|.+...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999986443
No 415
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.24 E-value=0.43 Score=44.20 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcC--CCeEEEEEeCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFG--VDQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~--vp~IIVVvNKiDl~ 418 (471)
.+.++|||||+... ......+..+|.+|+|+..... -.......++.++..+ .+.+.+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQ--------SLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHH--------HHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHH--------HHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 46799999998543 2445567789999999988732 2234455666676666 34588999999865
No 416
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.23 E-value=0.082 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48999999999999999999764
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.16 E-value=0.1 Score=48.72 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcccc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLGRI 293 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~~i 293 (471)
++|+|+|+|||||+|+..+|....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 369999999999999999998766543
No 418
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.13 E-value=0.088 Score=46.97 Aligned_cols=24 Identities=46% Similarity=0.576 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+...|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999875544
No 419
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.06 E-value=0.091 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+.+.|....+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999976544
No 420
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.04 E-value=0.094 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|++|+|||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 3899999999999999999854
No 421
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.99 E-value=0.37 Score=47.58 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.9
Q ss_pred EEEEcCCCCCchhHhHHHhhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~ 289 (471)
++|.|.+|+|||||+..|+..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999888754
No 422
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.97 E-value=0.11 Score=49.79 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.95 E-value=0.1 Score=49.77 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+++.|+|+|.+|+|||||.+.|....+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346799999999999999999986544
No 424
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.90 E-value=0.1 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+||||+.+.|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999975543
No 425
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.84 E-value=0.1 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||+++|.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999998754
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.84 E-value=0.12 Score=48.46 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++|+|+|.+|+||||+..+|....+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976554
No 427
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.77 E-value=0.088 Score=55.97 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|++|+|||||+++|++..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 359999999999999999998753
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.75 E-value=0.12 Score=45.07 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg 288 (471)
..|+|.|.+|+|||+|+++|..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999984
No 429
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.72 E-value=0.12 Score=45.47 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
+|+|+|.+|+||||+...|....+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999875544
No 430
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.63 E-value=0.16 Score=51.00 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
.+.|.|++|+|||+|...+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999999984
No 431
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.59 E-value=0.1 Score=54.12 Aligned_cols=23 Identities=35% Similarity=0.211 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||++.|++..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999753
No 432
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.58 E-value=0.071 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 48999999999999999999864
No 433
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.55 E-value=0.11 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|+|.+|+|||||..+|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 489999999999999999986644
No 434
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=90.45 E-value=0.55 Score=45.83 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=48.5
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
+.++|||||...... ........+|.+|+|+..... -.......++.+...+.+.+-+|+|++|..
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~--------~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVN--------TLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTS--------BHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 579999999865432 223345669999999998855 234556677778888877677899999865
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.42 E-value=0.11 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999754
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.33 E-value=0.13 Score=50.03 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCchhHhHHHh
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLL 287 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLl 287 (471)
+++.|+|+|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 437
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.28 E-value=0.11 Score=50.23 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=20.2
Q ss_pred EEEEcCCCCCchhHhHHHhhhc
Q 012085 269 LAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~~ 290 (471)
++|+|++|+|||||+..|++..
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.27 E-value=0.14 Score=46.16 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCchhHhHHHhhhcc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.|+|.|.+|+||||+.+.|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 599999999999999999976544
No 439
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.17 E-value=1.2 Score=43.89 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=46.8
Q ss_pred CEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCCCCC----hhhHHHHHHHHHHHHHhcCCCCC
Q 012085 369 DAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAVQYS----KDRFDSIKVQLGTFLRSCGFKDA 444 (471)
Q Consensus 369 D~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~~~~----~e~~eei~~~L~~~l~~~g~~~~ 444 (471)
+.+|+|...... .....+..++.++..+++..-+|+|++...... ..+.+.....+.++.+.++. .
T Consensus 223 ~~~vlV~~p~~~--------~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~--~ 292 (324)
T 3zq6_A 223 TSFKMVVIPEEM--------SIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSD--K 292 (324)
T ss_dssp EEEEEEECSSHH--------HHHHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTT--S
T ss_pred CeEEEEeCCccc--------HHHHHHHHHHHHHHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 478888766632 345667778888899999668899999764211 11222223334444444432 2
Q ss_pred CccEEEEecccCCCcc
Q 012085 445 SLTWIPLSALENQNLV 460 (471)
Q Consensus 445 ~i~IIpvSAktG~gI~ 460 (471)
.+..+|.-...=.|++
T Consensus 293 ~~~~iPl~~~e~~g~~ 308 (324)
T 3zq6_A 293 VVAEVPLLKKEAKGIE 308 (324)
T ss_dssp EEEEEECCSSCSCSHH
T ss_pred cEEEecCCCCCCCCHH
Confidence 3445666555544543
No 440
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.13 E-value=0.17 Score=47.69 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhccc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLLGR 292 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~~~ 292 (471)
+...|+|+|+||+||+|+..+|....+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3345788999999999999999866554
No 441
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.09 E-value=0.15 Score=47.80 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=23.7
Q ss_pred cccceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 263 RMTQLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 263 ~~~~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..+...|+|+|.+|+||||+.+.|....+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556799999999999999999986554
No 442
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.05 E-value=0.96 Score=42.72 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=45.1
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCC-eEEEEEeCCCC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVD-QLIVAVNKMDA 417 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp-~IIVVvNKiDl 417 (471)
..+.++|||||+... ......+..+|.+|+|+..... -.......++.+...+.. ++.+|+|++..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKW--------AVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTT--------HHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChH--------HHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 357899999998543 3445566779999999998744 123344556666666432 47899999953
No 443
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.02 E-value=0.069 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999764
No 444
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.00 E-value=0.11 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 49999999999999999999864
No 445
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.99 E-value=0.12 Score=49.71 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+|+|+|.+|+|||||.+.|....+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3599999999999999999986554
No 446
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.88 E-value=0.16 Score=46.57 Aligned_cols=25 Identities=40% Similarity=0.388 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|.+|+||||+++.|.....
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999976543
No 447
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.75 E-value=0.14 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.|+|+|++|+|||||+++|.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 39999999999999999998754
No 448
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.71 E-value=0.14 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+++|+|..|+|||||++.|++..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999764
No 449
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.66 E-value=1.1 Score=42.19 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHh----c--CCCeE-EEEEeC
Q 012085 342 KNYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRS----F--GVDQL-IVAVNK 414 (471)
Q Consensus 342 ~~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~----~--~vp~I-IVVvNK 414 (471)
..+.++|||||+.... .....+..+|.+|+|+..... ++ ......++.+.. . +.+ + -+|+|+
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~----s~----~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~ 178 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYY----AL----EGVAGLLATLEEVRAGLNPRLR-LLGILVTM 178 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTH----HH----HHHHHHHHHHHHHHHHTCTTCE-EEEEEEES
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchH----HH----HHHHHHHHHHHHHHHHhCCCce-EEEEEEEe
Confidence 4578999999986432 234456679999999998743 11 112222222222 1 333 5 489999
Q ss_pred CCCC
Q 012085 415 MDAV 418 (471)
Q Consensus 415 iDl~ 418 (471)
++..
T Consensus 179 ~~~~ 182 (257)
T 1wcv_1 179 YDGR 182 (257)
T ss_dssp BCTT
T ss_pred ECCC
Confidence 9864
No 450
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.58 E-value=0.15 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
.++|+|++|+|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999986
No 451
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.57 E-value=0.14 Score=54.59 Aligned_cols=23 Identities=39% Similarity=0.309 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.47 E-value=0.15 Score=47.12 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|++|+|||||+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999874
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.44 E-value=0.15 Score=54.93 Aligned_cols=23 Identities=48% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 59999999999999999998764
No 454
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.36 E-value=1.4 Score=44.30 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=18.0
Q ss_pred EEEEcCCCCCchhHhHHHhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg 288 (471)
+.|.|++|+|||||+-.++.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999888764
No 455
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.22 E-value=0.16 Score=46.56 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
++.|+|+|.+|+||||+...|....+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35699999999999999999876544
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.19 E-value=0.19 Score=47.31 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|.|.+|+||||++++|.....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35699999999999999999987654
No 457
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=89.17 E-value=0.16 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|++|+|||||++.|.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999999999875
No 458
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.15 E-value=0.15 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 59999999999999999998754
No 459
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.10 E-value=0.18 Score=46.36 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
...|+|+|.+|+||||+.+.|....+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999999875533
No 460
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.06 E-value=0.17 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
-.++|+|+.|+|||||++.|+|..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 359999999999999999998754
No 461
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.01 E-value=0.15 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCchhHhHHHhh
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg 288 (471)
...|+|.|++|+|||+|+..|..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 462
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.92 E-value=0.19 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|+|+|++|+|||||+++|.+..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 359999999999999999998643
No 463
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.91 E-value=0.17 Score=49.49 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=18.8
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.+.|+|.|.+|+|||||.+.|....+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35699999999999999999976433
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.88 E-value=0.16 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999998764
No 465
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.87 E-value=0.16 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999754
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.80 E-value=0.2 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|+|.+|+||||+.++|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999853
No 467
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.62 E-value=0.21 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|+|.|++|+|||||+.+|...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
No 468
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.58 E-value=0.78 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+.|+|++|+|||+|+..|+..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 469
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.52 E-value=0.17 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999864
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.50 E-value=0.15 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 59999999999999999998754
No 471
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.47 E-value=0.22 Score=45.07 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhh
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~ 289 (471)
..|.|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999853
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.46 E-value=0.18 Score=48.04 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.5
Q ss_pred cceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 265 TQLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 265 ~~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+...|+|.|..|+||||+++.|....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44679999999999999999998654
No 473
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=88.36 E-value=0.83 Score=43.13 Aligned_cols=24 Identities=29% Similarity=0.138 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.-+++.|.+|+||||++-.++...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 347889999999999988777543
No 474
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.29 E-value=0.2 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
+++|+|+.|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 59999999999999999998764
No 475
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.15 E-value=0.2 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999864
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.14 E-value=0.21 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.183 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 49999999999999999999864
No 477
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.09 E-value=0.42 Score=49.71 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.9
Q ss_pred EEEEcCCCCCchhHhHHHhhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~ 289 (471)
++|.|.||+|||||+..|+..
T Consensus 200 iiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHH
Confidence 899999999999999888754
No 478
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.02 E-value=0.22 Score=43.66 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
-.+|+|+.|+|||||+.+|..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999974
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.92 E-value=0.18 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 59999999999999999998754
No 480
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.78 E-value=0.23 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 481
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=87.53 E-value=0.5 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
-+.|.|.+|+|||||+..|+..
T Consensus 76 li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHH
Confidence 4788999999999999888743
No 482
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.52 E-value=0.27 Score=46.07 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|+|.|..|+||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998654
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.45 E-value=0.7 Score=44.57 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=45.7
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
.+.++|||||+..... .....+..+|.+|+|+..... -.......++.+...+.+.+-+|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENN--------NKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSC--------CHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 3579999999954332 122234568999999998854 234556667777777776334899999864
No 484
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.41 E-value=0.23 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 485
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=87.34 E-value=0.49 Score=44.24 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCC--------CeEEEEEeC
Q 012085 343 NYHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGV--------DQLIVAVNK 414 (471)
Q Consensus 343 ~~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~v--------p~IIVVvNK 414 (471)
.+.++|||||+... ......+..+|.+|+|+..... -.......++.+...+. ..+.+|+|+
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~ 182 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVS--------SVRDSDRILGILASKSRRAENGEEPIKEHLLLTR 182 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHH--------HHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEE
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChh--------HHHHHHHHHHHHHHhccccccccCCcceEEEEec
Confidence 67899999998443 3556677789999999988732 11233344455544331 347899999
Q ss_pred CCC
Q 012085 415 MDA 417 (471)
Q Consensus 415 iDl 417 (471)
++.
T Consensus 183 ~~~ 185 (260)
T 3q9l_A 183 YNP 185 (260)
T ss_dssp ECH
T ss_pred CCc
Confidence 984
No 486
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=87.33 E-value=0.42 Score=34.64 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=28.7
Q ss_pred ceeecccccCCCCccccccccCCCCCccccCC
Q 012085 50 VWSCAICTYDNEEGMSVCDICGVLRTPLVNNN 81 (471)
Q Consensus 50 ~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~~~ 81 (471)
.|+|.-|.--|.+.+..|..|=.+|...+.-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwaLRk~Wlpd~ 42 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWALRKDWYSDC 42 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCCBCCCCCCCC
T ss_pred eeecccccccCCCccchhHHHHHhhcccCCCc
Confidence 69999999999999999999999998766543
No 487
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.33 E-value=0.44 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+.|.|.+|+|||||+..|+..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 488
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.24 E-value=0.25 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchhHhHHHhhhc
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
.++|+|+.|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.16 E-value=0.29 Score=50.04 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
..|+|+|++|+|||||++.|.+...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3599999999999999999987643
No 490
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=87.08 E-value=0.29 Score=34.81 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=27.9
Q ss_pred CceeecccccCCCCccccccccCCCCCcccc
Q 012085 49 RVWSCAICTYDNEEGMSVCDICGVLRTPLVN 79 (471)
Q Consensus 49 ~~w~c~~c~~~n~~~~~~c~~c~~~r~~~~~ 79 (471)
..|+|.-|.--|.+.+..|..|-.+|...+.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~LRk~Wlp 42 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWALRENWLP 42 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCCCCSSCSC
T ss_pred ceEecccccccCCCccchhhHHHhhccccCC
Confidence 4599999999999999999999999987554
No 491
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.04 E-value=0.26 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.179 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|+|++|+|||||+..|++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 492
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.02 E-value=0.24 Score=58.41 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
-+|+|||++|+|||||++.|++..
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCc
Confidence 479999999999999999998643
No 493
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=87.00 E-value=0.27 Score=44.34 Aligned_cols=22 Identities=18% Similarity=0.161 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCchhHhHHHhhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg~ 289 (471)
.++|.|++|+|||||+..|...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 494
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.94 E-value=0.26 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.8
Q ss_pred EEEEcCCCCCchhHhHHHhhh
Q 012085 269 LAIVGHVDSGKSTLSGRLLFL 289 (471)
Q Consensus 269 IaVVG~~gvGKSTLInrLlg~ 289 (471)
.+|+|+.|+|||||+++|+..
T Consensus 26 ~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999744
No 495
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=86.71 E-value=1.2 Score=43.63 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=46.0
Q ss_pred eEEEEEeCCCCCCchhhhhhccccCCEEEEEEeCCCCccccccchhhhHHHHHHHHHHhcCCCeEEEEEeCCCCC
Q 012085 344 YHVVVLDSPGHKDFVPNMISGATQSDAAILVIDASVGSFEVGMNTAKGLTREHAQLIRSFGVDQLIVAVNKMDAV 418 (471)
Q Consensus 344 ~~l~LIDTPG~e~f~~~~~~~l~~aD~vIlVVDas~g~~e~~~~~l~~~~~e~l~ll~~~~vp~IIVVvNKiDl~ 418 (471)
+.++|||||+...... .......+|.+|+|+..... -.......++.+...+.+.+-+|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGLN--------TAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTTS--------CTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCCC--------hHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 5799999999654322 22234669999999988755 234556667777777776445889999865
No 496
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.36 E-value=0.36 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..|.|.|++|+|||+|+++|....
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 459999999999999999998654
No 497
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.35 E-value=0.31 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchhHhHHHhh
Q 012085 268 NLAIVGHVDSGKSTLSGRLLF 288 (471)
Q Consensus 268 ~IaVVG~~gvGKSTLInrLlg 288 (471)
.|+|.|++|+|||+|+..|..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999974
No 498
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=86.32 E-value=0.35 Score=46.12 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhcc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLLG 291 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~~ 291 (471)
.++++|+|.+|+||||+..+|....+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976554
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.30 E-value=0.36 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCchhHhHHHhhhc
Q 012085 266 QLNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 266 ~i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
...|.|.|++|+|||+|+.+|....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999998543
No 500
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.17 E-value=1.8 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCchhHhHHHhhhc
Q 012085 267 LNLAIVGHVDSGKSTLSGRLLFLL 290 (471)
Q Consensus 267 i~IaVVG~~gvGKSTLInrLlg~~ 290 (471)
..++|.|++|+|||||+.+|....
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998543
Done!