BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012087
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
Length = 461
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM----DILSRHSEVVYNQSKEIAASQ 248
+ LLQ I +S+D +++ V+ V+QT+ M D+ + + V + +
Sbjct: 84 EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYS 143
Query: 249 TELQEGQVRIKEKLDEGMAT 268
+EL++ Q+ I E ++ + T
Sbjct: 144 SELEKHQLYIDETVNSNIPT 163
>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 458
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM----DILSRHSEVVYNQSKEIAASQ 248
+ LLQ I +S+D +++ V+ V+QT+ M D+ + + V + +
Sbjct: 84 EALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYS 143
Query: 249 TELQEGQVRIKEKLDEGMAT 268
+EL++ Q+ I E ++ + T
Sbjct: 144 SELEKHQLYIDETVNSNIPT 163
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 157 QLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDS---IDHRV 213
+LQ H F L N LK+ E E+ +T L+ DSL++ I
Sbjct: 265 ELQPH-FPDAYCNLANALKEKGSVAE-----AEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAY 273
N+ + + R +++ + ++ + Q +LQE + KE + T DAY
Sbjct: 319 GNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAY 376
Query: 274 SNLGKEVNNLRD 285
SN+G + ++D
Sbjct: 377 SNMGNTLKEMQD 388
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 171 VNELKKSADYTEHKLEIIEEK--SDTLLQSSNQ-----------IHDSLDSIDHRVQNVA 217
++E +A Y EH I+ EK L+Q++ + + + LD+ ++ VA
Sbjct: 89 LSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAGSLDEILDTAGKKILEVA 148
Query: 218 QT-----AKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA 272
T A+ +R+L+ H E ++ E+A +T +E I L G +I A
Sbjct: 149 LTKTDTEARPMRELVHETFEHIEALFQNKGEVAGVRTGFKELDQLIG-TLGPGSLNIIAA 207
Query: 273 YSNLGK 278
+GK
Sbjct: 208 RPAMGK 213
>pdb|1A3Y|B Chain B, Odorant Binding Protein From Nasal Mucosa Of Pig
pdb|1A3Y|A Chain A, Odorant Binding Protein From Nasal Mucosa Of Pig
Length = 149
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 135 KIDDEEHKIYLAFLLETNSICYQLQAHGFQYE 166
+ DD+E K+YL F + N IC + G + E
Sbjct: 35 EFDDKESKVYLNFFSKENGICEEFSLIGTKQE 66
>pdb|1DZJ|A Chain A, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZJ|B Chain B, Porcine Odorant Binding Protein Complexed With
2-Amino-4-Butyl-5-Propylselenazole
pdb|1DZK|A Chain A, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZK|B Chain B, Porcine Odorant Binding Protein Complexed With Pyrazine
(2-Isobutyl-3-Metoxypyrazine)
pdb|1DZM|A Chain A, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZM|B Chain B, Porcine Odorant Binding Protein Complexed With Benzoic
Acid Phenylmethylester
pdb|1DZP|A Chain A, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1DZP|B Chain B, Porcine Odorant Binding Protein Complexed With
Diphenylmethanone
pdb|1E00|A Chain A, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E00|B Chain B, Porcine Odorant Binding Protein Complexed With
2,6-Dimethyl- 7-Octen-2-Ol
pdb|1E02|A Chain A, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E02|B Chain B, Porcine Odorant Binding Protein Complexed With Undecanal
pdb|1E06|A Chain A, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1E06|B Chain B, Porcine Odorant Binding Protein Complexed With 5-Methyl-2-
(1-Methylethyl)phenol
pdb|1HQP|A Chain A, Crystal Structure Of A Truncated Form Of Porcine Odorant-
Binding Protein
Length = 157
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 135 KIDDEEHKIYLAFLLETNSICYQLQAHGFQYE 166
+ DD+E K+YL F + N IC + G + E
Sbjct: 43 EFDDKESKVYLNFFSKENGICEEFSLIGTKQE 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,107,540
Number of Sequences: 62578
Number of extensions: 391417
Number of successful extensions: 1068
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 26
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)