Query 012087
Match_columns 471
No_of_seqs 94 out of 96
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04163 Tht1: Tht1-like nucle 99.5 1E-08 2.2E-13 111.0 46.5 102 72-176 59-166 (544)
2 PRK15048 methyl-accepting chem 97.2 0.51 1.1E-05 51.0 30.0 90 271-364 392-481 (553)
3 PRK15041 methyl-accepting chem 97.0 0.71 1.5E-05 50.4 30.1 89 272-364 395-483 (554)
4 smart00283 MA Methyl-accepting 96.4 0.93 2E-05 42.7 32.2 19 278-296 133-151 (262)
5 PRK09793 methyl-accepting prot 96.3 2.2 4.8E-05 46.3 29.3 26 272-297 391-416 (533)
6 KOG0994 Extracellular matrix g 95.9 1.8 3.9E-05 51.7 22.8 71 270-341 1667-1737(1758)
7 PF10168 Nup88: Nuclear pore c 95.8 1.1 2.4E-05 51.2 21.0 82 146-227 539-623 (717)
8 PRK15048 methyl-accepting chem 95.5 4.4 9.6E-05 43.8 28.8 27 265-291 393-419 (553)
9 TIGR02168 SMC_prok_B chromosom 94.8 10 0.00022 43.9 31.6 66 350-416 980-1050(1179)
10 PRK09793 methyl-accepting prot 94.8 7.4 0.00016 42.3 28.0 21 344-364 459-479 (533)
11 KOG0810 SNARE protein Syntaxin 94.3 7.5 0.00016 40.3 24.7 150 294-445 125-287 (297)
12 KOG0979 Structural maintenance 93.7 19 0.00042 42.8 26.4 168 147-325 136-312 (1072)
13 PRK15041 methyl-accepting chem 93.7 13 0.00029 40.7 29.1 49 323-371 463-511 (554)
14 KOG0994 Extracellular matrix g 93.2 25 0.00055 42.7 30.8 127 274-401 1545-1692(1758)
15 TIGR02132 phaR_Bmeg polyhydrox 92.4 11 0.00025 36.6 18.0 40 327-380 134-174 (189)
16 PF00015 MCPsignal: Methyl-acc 92.2 9.5 0.0002 35.3 23.3 23 172-194 19-41 (213)
17 PF14662 CCDC155: Coiled-coil 92.0 13 0.00029 36.4 20.3 104 174-285 20-123 (193)
18 TIGR02169 SMC_prok_A chromosom 91.3 34 0.00074 39.9 33.5 21 73-93 606-629 (1164)
19 PF04849 HAP1_N: HAP1 N-termin 90.9 11 0.00024 39.3 15.9 46 213-258 205-250 (306)
20 TIGR00996 Mtu_fam_mce virulenc 89.7 22 0.00048 35.4 16.6 46 182-227 170-215 (291)
21 PF07464 ApoLp-III: Apolipopho 89.7 2.4 5.1E-05 40.0 9.1 38 161-199 6-43 (155)
22 PRK11637 AmiB activator; Provi 88.7 36 0.00079 36.2 28.9 36 239-274 100-135 (428)
23 PF00015 MCPsignal: Methyl-acc 88.6 20 0.00043 33.1 22.1 34 270-303 74-107 (213)
24 COG0840 Tar Methyl-accepting c 88.5 31 0.00068 35.2 30.3 28 271-298 271-298 (408)
25 PF10498 IFT57: Intra-flagella 88.3 20 0.00042 38.1 15.7 19 158-176 191-209 (359)
26 PF07464 ApoLp-III: Apolipopho 88.2 7.2 0.00016 36.8 11.2 69 254-322 46-118 (155)
27 PF08317 Spc7: Spc7 kinetochor 87.3 39 0.00084 34.9 19.7 77 143-219 119-199 (325)
28 KOG0250 DNA repair protein RAD 87.2 77 0.0017 38.3 32.1 31 398-428 429-459 (1074)
29 PF03908 Sec20: Sec20; InterP 85.2 16 0.00035 30.9 10.8 14 429-442 75-88 (92)
30 TIGR00833 actII Transport prot 84.9 80 0.0017 37.2 19.7 17 187-203 516-532 (910)
31 COG1196 Smc Chromosome segrega 83.5 1.1E+02 0.0025 36.9 32.3 47 72-120 598-654 (1163)
32 PF10168 Nup88: Nuclear pore c 83.1 98 0.0021 35.9 21.4 27 171-197 588-614 (717)
33 PRK11637 AmiB activator; Provi 82.7 71 0.0015 34.0 27.0 29 236-264 104-132 (428)
34 PRK10698 phage shock protein P 82.0 56 0.0012 32.3 21.3 55 244-298 79-133 (222)
35 TIGR02977 phageshock_pspA phag 81.4 55 0.0012 31.9 19.2 101 204-310 45-148 (219)
36 KOG0243 Kinesin-like protein [ 81.4 1.3E+02 0.0029 36.3 29.4 126 270-395 721-862 (1041)
37 COG1511 Predicted membrane pro 80.8 70 0.0015 37.1 17.0 124 168-298 170-296 (780)
38 PF07889 DUF1664: Protein of u 80.8 30 0.00065 31.8 11.4 51 243-297 58-108 (126)
39 KOG4460 Nuclear pore complex, 80.6 1E+02 0.0022 35.1 17.1 74 129-203 557-643 (741)
40 PF08580 KAR9: Yeast cortical 79.3 1.3E+02 0.0028 34.8 22.9 47 250-296 106-155 (683)
41 COG0840 Tar Methyl-accepting c 79.2 79 0.0017 32.3 29.2 105 264-369 271-379 (408)
42 COG5185 HEC1 Protein involved 79.0 1.2E+02 0.0025 34.1 18.5 146 162-318 275-429 (622)
43 PF04012 PspA_IM30: PspA/IM30 78.9 63 0.0014 31.1 19.2 54 244-297 78-131 (221)
44 PF11932 DUF3450: Protein of u 78.7 72 0.0016 31.6 17.0 96 165-267 24-119 (251)
45 PF10498 IFT57: Intra-flagella 78.5 53 0.0012 34.9 14.0 30 268-297 284-313 (359)
46 PRK05260 condesin subunit F; P 78.1 1.1E+02 0.0024 33.5 21.3 174 151-384 108-283 (440)
47 KOG0972 Huntingtin interacting 77.7 69 0.0015 33.8 14.0 118 160-297 200-320 (384)
48 PF08172 CASP_C: CASP C termin 76.8 47 0.001 33.6 12.5 29 409-437 199-228 (248)
49 KOG0250 DNA repair protein RAD 76.0 1.9E+02 0.0042 35.1 30.6 95 202-296 279-383 (1074)
50 COG3883 Uncharacterized protei 75.5 1E+02 0.0022 31.7 19.1 26 258-283 85-110 (265)
51 KOG3759 Uncharacterized RUN do 75.0 15 0.00034 40.4 9.0 112 175-296 130-245 (621)
52 PF07889 DUF1664: Protein of u 74.5 71 0.0015 29.4 12.2 34 263-296 88-121 (126)
53 PHA02562 46 endonuclease subun 74.2 1.3E+02 0.0029 32.5 26.7 15 428-442 422-436 (562)
54 PF09602 PhaP_Bmeg: Polyhydrox 73.4 91 0.002 30.1 13.3 37 302-338 18-54 (165)
55 TIGR02169 SMC_prok_A chromosom 73.0 2E+02 0.0043 33.8 37.8 36 351-386 450-485 (1164)
56 KOG1853 LIS1-interacting prote 72.8 1.2E+02 0.0027 31.4 18.2 74 223-296 92-182 (333)
57 TIGR00606 rad50 rad50. This fa 71.5 2.6E+02 0.0055 34.5 30.9 13 115-127 675-687 (1311)
58 PF06008 Laminin_I: Laminin Do 70.5 1.2E+02 0.0026 30.2 28.0 98 164-261 40-142 (264)
59 KOG0161 Myosin class II heavy 70.3 3.3E+02 0.0072 35.4 36.1 74 165-238 1241-1314(1930)
60 KOG0946 ER-Golgi vesicle-tethe 69.7 2.5E+02 0.0053 33.5 18.9 42 270-312 736-777 (970)
61 PF06160 EzrA: Septation ring 69.6 1.9E+02 0.0042 32.3 29.8 70 214-283 104-173 (560)
62 COG3264 Small-conductance mech 68.8 1.5E+02 0.0032 35.2 15.4 180 156-352 35-222 (835)
63 COG1842 PspA Phage shock prote 68.6 1.3E+02 0.0029 30.0 21.3 118 177-297 14-132 (225)
64 PF10392 COG5: Golgi transport 67.5 95 0.0021 28.0 13.1 66 208-281 30-96 (132)
65 PRK04778 septation ring format 66.5 2.2E+02 0.0048 31.8 30.9 60 223-286 280-339 (569)
66 KOG0996 Structural maintenance 66.1 3.3E+02 0.0072 33.7 33.8 39 141-180 304-342 (1293)
67 PF04582 Reo_sigmaC: Reovirus 65.8 13 0.00028 39.2 5.8 127 181-322 33-159 (326)
68 PF05478 Prominin: Prominin; 65.3 2.7E+02 0.006 32.5 34.2 58 140-197 144-201 (806)
69 PRK04778 septation ring format 63.8 2.5E+02 0.0053 31.4 31.4 20 396-415 391-410 (569)
70 smart00787 Spc7 Spc7 kinetocho 63.5 1.9E+02 0.0042 30.1 19.1 24 301-324 269-292 (312)
71 PF05802 EspB: Enterobacterial 62.8 2E+02 0.0044 30.1 14.1 71 250-320 236-307 (317)
72 KOG0804 Cytoplasmic Zn-finger 62.5 2.6E+02 0.0056 31.2 16.3 56 271-330 403-458 (493)
73 PLN03223 Polycystin cation cha 61.2 15 0.00032 45.2 5.9 51 299-349 1567-1617(1634)
74 COG1579 Zn-ribbon protein, pos 60.6 2E+02 0.0043 29.3 19.1 27 270-296 88-114 (239)
75 KOG0946 ER-Golgi vesicle-tethe 59.8 3.7E+02 0.008 32.1 24.3 66 365-431 808-881 (970)
76 PF11932 DUF3450: Protein of u 59.7 1.9E+02 0.0041 28.7 18.4 50 183-232 21-70 (251)
77 PLN03223 Polycystin cation cha 59.4 1.5E+02 0.0033 37.1 13.5 94 203-304 777-880 (1634)
78 TIGR00996 Mtu_fam_mce virulenc 57.8 2.1E+02 0.0044 28.6 17.3 40 212-251 186-225 (291)
79 PF00261 Tropomyosin: Tropomyo 57.8 2E+02 0.0043 28.4 19.1 17 211-227 134-150 (237)
80 PF00957 Synaptobrevin: Synapt 57.7 1.1E+02 0.0024 25.4 10.7 47 351-401 5-51 (89)
81 PF14523 Syntaxin_2: Syntaxin- 57.6 1.1E+02 0.0025 25.5 12.3 50 280-329 5-59 (102)
82 PF06705 SF-assemblin: SF-asse 56.2 2.1E+02 0.0046 28.3 29.4 52 370-427 168-219 (247)
83 PF10267 Tmemb_cc2: Predicted 55.7 3E+02 0.0066 29.9 16.4 22 416-437 321-345 (395)
84 KOG1655 Protein involved in va 55.2 2.3E+02 0.005 28.3 13.5 54 270-323 96-153 (218)
85 PRK10361 DNA recombination pro 54.6 3.5E+02 0.0075 30.2 20.4 47 274-320 143-189 (475)
86 PF05251 UPF0197: Uncharacteri 54.3 15 0.00033 31.2 3.3 35 433-467 28-62 (77)
87 PF13166 AAA_13: AAA domain 54.3 3.6E+02 0.0078 30.3 24.3 21 131-151 260-281 (712)
88 KOG4452 Predicted membrane pro 52.8 7.6 0.00017 32.5 1.3 34 434-467 31-64 (79)
89 PF04111 APG6: Autophagy prote 52.4 2.9E+02 0.0064 28.7 13.1 14 139-152 23-36 (314)
90 PF06103 DUF948: Bacterial pro 52.4 1.3E+02 0.0028 25.1 8.7 26 271-296 33-58 (90)
91 PHA03386 P10 fibrous body prot 52.1 45 0.00098 29.4 5.9 50 290-347 6-56 (94)
92 PF08702 Fib_alpha: Fibrinogen 51.9 2E+02 0.0044 26.8 15.1 101 202-313 23-128 (146)
93 PF10146 zf-C4H2: Zinc finger- 51.8 2.6E+02 0.0057 28.0 14.1 28 259-286 76-103 (230)
94 PF01519 DUF16: Protein of unk 51.0 1.2E+02 0.0027 27.1 8.5 44 269-312 51-94 (102)
95 KOG2196 Nuclear porin [Nuclear 49.7 3.1E+02 0.0067 28.2 15.1 46 183-228 113-158 (254)
96 COG4942 Membrane-bound metallo 49.5 4E+02 0.0086 29.4 21.5 60 236-296 46-105 (420)
97 PF09074 Mer2: Mer2; InterPro 49.0 2.8E+02 0.006 27.4 14.4 26 162-187 41-66 (190)
98 PF03882 KicB: KicB killing fa 48.6 4.1E+02 0.0089 29.3 21.8 172 153-384 110-283 (440)
99 COG1579 Zn-ribbon protein, pos 48.3 3.1E+02 0.0068 27.9 22.6 50 259-312 33-82 (239)
100 KOG0996 Structural maintenance 48.1 6.4E+02 0.014 31.4 29.5 19 74-93 706-724 (1293)
101 KOG2701 Uncharacterized conser 47.4 4.9E+02 0.011 29.9 26.9 78 299-376 380-467 (608)
102 PF11887 DUF3407: Protein of u 47.2 3.2E+02 0.0069 27.7 17.5 27 171-197 19-45 (267)
103 PF14992 TMCO5: TMCO5 family 46.8 3.6E+02 0.0078 28.1 19.1 52 350-401 110-161 (280)
104 PF04912 Dynamitin: Dynamitin 46.5 3.8E+02 0.0081 28.4 13.0 62 236-297 326-387 (388)
105 PF04344 CheZ: Chemotaxis phos 46.3 2.3E+02 0.005 27.9 10.6 27 272-298 128-155 (214)
106 COG1511 Predicted membrane pro 45.5 5.6E+02 0.012 30.0 17.9 120 244-363 421-546 (780)
107 COG1580 FliL Flagellar basal b 44.4 19 0.00042 34.1 2.7 20 10-29 25-44 (159)
108 PF06013 WXG100: Proteins of 1 44.3 1.5E+02 0.0032 22.9 8.0 27 270-296 50-76 (86)
109 KOG0612 Rho-associated, coiled 43.5 7.6E+02 0.016 30.9 30.1 70 350-421 624-693 (1317)
110 PF03904 DUF334: Domain of unk 43.2 3.7E+02 0.0081 27.3 14.8 32 172-203 46-77 (230)
111 PF10392 COG5: Golgi transport 43.1 2.5E+02 0.0055 25.3 12.4 36 261-296 69-104 (132)
112 KOG0933 Structural maintenance 42.2 7.5E+02 0.016 30.5 28.3 48 392-439 840-887 (1174)
113 PF06320 GCN5L1: GCN5-like pro 42.1 2.7E+02 0.0058 25.2 14.9 27 159-185 8-34 (121)
114 PF06120 Phage_HK97_TLTM: Tail 40.7 4.6E+02 0.0099 27.6 21.0 13 411-423 199-211 (301)
115 PF11887 DUF3407: Protein of u 40.4 4.1E+02 0.0088 26.9 16.5 30 215-244 67-96 (267)
116 cd07605 I-BAR_IMD Inverse (I)- 40.3 3.9E+02 0.0085 26.7 19.1 22 163-184 3-24 (223)
117 PRK11166 chemotaxis regulator 40.1 4E+02 0.0086 26.7 14.2 24 273-296 141-165 (214)
118 COG1196 Smc Chromosome segrega 40.0 7.8E+02 0.017 30.1 38.6 39 139-177 210-251 (1163)
119 PF09753 Use1: Membrane fusion 39.7 3.5E+02 0.0075 26.9 10.9 29 391-419 194-223 (251)
120 PF10112 Halogen_Hydrol: 5-bro 39.7 3.4E+02 0.0074 25.8 10.5 75 300-374 98-185 (199)
121 PRK09841 cryptic autophosphory 39.5 6.5E+02 0.014 29.0 17.6 8 79-86 100-107 (726)
122 KOG1916 Nuclear protein, conta 39.1 8.2E+02 0.018 30.0 22.3 88 242-341 939-1039(1283)
123 PF11221 Med21: Subunit 21 of 39.1 1.7E+02 0.0037 26.9 8.1 54 212-265 74-127 (144)
124 COG1463 Ttg2C ABC-type transpo 39.0 4.8E+02 0.01 27.3 15.9 19 169-187 162-180 (359)
125 PF04136 Sec34: Sec34-like fam 38.8 3.3E+02 0.0072 25.5 17.3 98 168-269 13-111 (157)
126 PRK02224 chromosome segregatio 38.4 6.9E+02 0.015 29.0 32.8 11 107-117 129-139 (880)
127 PF10186 Atg14: UV radiation r 38.3 3.9E+02 0.0085 26.1 19.6 147 110-308 5-156 (302)
128 PF04163 Tht1: Tht1-like nucle 38.3 6.4E+02 0.014 28.6 38.7 47 270-316 295-342 (544)
129 COG3853 TelA Uncharacterized p 38.0 5.7E+02 0.012 27.9 26.4 88 322-416 283-370 (386)
130 TIGR03513 GldL_gliding gliding 37.7 4.3E+02 0.0092 26.4 11.1 19 331-349 140-158 (202)
131 PF04740 LXG: LXG domain of WX 37.7 3.5E+02 0.0076 25.4 20.1 17 400-416 164-180 (204)
132 cd07610 FCH_F-BAR The Extended 37.3 3.3E+02 0.0072 25.0 21.0 36 349-384 123-158 (191)
133 KOG3208 SNARE protein GS28 [In 37.2 4.6E+02 0.01 26.6 17.3 42 377-418 142-190 (231)
134 PF04156 IncA: IncA protein; 36.6 3.6E+02 0.0078 25.2 14.9 35 259-293 125-159 (191)
135 PRK04863 mukB cell division pr 36.4 1E+03 0.022 30.4 32.9 49 374-422 586-634 (1486)
136 TIGR02105 III_needle type III 35.8 2.4E+02 0.0052 23.6 7.6 38 324-362 32-69 (72)
137 PF04912 Dynamitin: Dynamitin 35.6 5.6E+02 0.012 27.1 17.0 48 267-314 332-379 (388)
138 PRK10884 SH3 domain-containing 35.5 4.5E+02 0.0097 25.9 12.2 31 266-296 134-164 (206)
139 KOG0804 Cytoplasmic Zn-finger 35.0 6.9E+02 0.015 28.0 15.4 14 184-197 348-361 (493)
140 PF02520 DUF148: Domain of unk 35.0 3E+02 0.0065 23.8 10.2 66 251-316 45-110 (113)
141 PF10174 Cast: RIM-binding pro 34.8 8.4E+02 0.018 28.9 22.9 152 258-419 47-207 (775)
142 COG3883 Uncharacterized protei 34.4 5.4E+02 0.012 26.6 21.3 31 350-380 166-196 (265)
143 cd00179 SynN Syntaxin N-termin 34.1 3.4E+02 0.0073 24.1 14.0 41 296-336 92-132 (151)
144 PF01920 Prefoldin_2: Prefoldi 33.9 1.6E+02 0.0034 24.6 6.5 29 268-296 66-94 (106)
145 TIGR02131 phaP_Bmeg polyhydrox 33.8 4.3E+02 0.0093 25.2 12.3 30 372-401 87-124 (165)
146 PRK02224 chromosome segregatio 33.7 8.1E+02 0.018 28.4 33.1 11 268-278 283-293 (880)
147 PF07851 TMPIT: TMPIT-like pro 33.7 6.1E+02 0.013 27.0 15.8 120 301-437 23-165 (330)
148 TIGR00606 rad50 rad50. This fa 33.6 1E+03 0.022 29.5 36.0 19 368-386 1073-1091(1311)
149 PLN03094 Substrate binding sub 33.5 6.4E+02 0.014 27.2 14.3 31 292-322 323-353 (370)
150 TIGR00634 recN DNA repair prot 33.4 7.1E+02 0.015 27.7 25.7 25 371-395 347-371 (563)
151 PF05600 DUF773: Protein of un 33.0 6.6E+02 0.014 28.1 12.7 8 73-80 308-315 (507)
152 PTZ00464 SNF-7-like protein; P 33.0 5E+02 0.011 25.7 16.9 25 299-323 127-151 (211)
153 PF05073 Baculo_p24: Baculovir 32.4 3E+02 0.0064 27.1 8.6 54 148-201 64-126 (182)
154 PRK04863 mukB cell division pr 32.4 1.2E+03 0.025 29.9 31.0 18 406-423 656-673 (1486)
155 smart00511 ORANGE Orange domai 32.2 27 0.00059 25.8 1.4 37 74-113 6-42 (45)
156 PF10393 Matrilin_ccoil: Trime 31.9 1.2E+02 0.0026 23.5 4.8 31 161-191 15-45 (47)
157 PRK00753 psbL photosystem II r 31.6 31 0.00067 25.8 1.5 16 454-470 16-31 (39)
158 PF15237 PTRF_SDPR: PTRF/SDPR 31.0 3.6E+02 0.0078 27.7 9.3 37 202-238 21-57 (246)
159 TIGR03752 conj_TIGR03752 integ 30.7 5.5E+02 0.012 28.7 11.4 35 168-202 58-92 (472)
160 PF04799 Fzo_mitofusin: fzo-li 30.0 3.6E+02 0.0078 26.2 8.8 29 271-299 137-165 (171)
161 PF05531 NPV_P10: Nucleopolyhe 29.7 2.9E+02 0.0064 23.4 7.2 41 300-341 15-55 (75)
162 PF06156 DUF972: Protein of un 29.5 3.5E+02 0.0076 24.1 8.1 41 224-264 14-54 (107)
163 PF15254 CCDC14: Coiled-coil d 29.5 1E+03 0.023 28.4 14.4 19 249-267 490-508 (861)
164 cd00193 t_SNARE Soluble NSF (N 29.3 2.3E+02 0.005 20.8 6.7 24 273-296 8-31 (60)
165 PF04136 Sec34: Sec34-like fam 29.1 4.8E+02 0.01 24.4 11.7 23 184-206 8-30 (157)
166 KOG1916 Nuclear protein, conta 28.9 8.4E+02 0.018 30.0 12.9 70 326-395 899-972 (1283)
167 COG1322 Predicted nuclease of 28.8 8.3E+02 0.018 27.0 19.1 22 246-267 124-145 (448)
168 PF14662 CCDC155: Coiled-coil 28.7 5.9E+02 0.013 25.3 22.9 50 179-228 4-53 (193)
169 PRK10780 periplasmic chaperone 28.5 4.9E+02 0.011 24.2 12.0 34 286-319 51-84 (165)
170 PF08581 Tup_N: Tup N-terminal 28.3 3.7E+02 0.008 22.8 10.9 34 244-277 44-77 (79)
171 PF05384 DegS: Sensor protein 27.6 5.5E+02 0.012 24.5 11.0 90 160-249 68-157 (159)
172 CHL00038 psbL photosystem II p 27.3 40 0.00087 25.1 1.5 16 454-470 15-30 (38)
173 PF02994 Transposase_22: L1 tr 27.2 1.8E+02 0.004 30.8 7.0 6 350-355 265-270 (370)
174 PRK15326 type III secretion sy 27.2 4.1E+02 0.0088 22.9 7.7 41 322-363 37-77 (80)
175 cd07623 BAR_SNX1_2 The Bin/Amp 27.0 6E+02 0.013 24.8 24.3 77 268-363 67-144 (224)
176 PRK14011 prefoldin subunit alp 26.6 2.9E+02 0.0063 25.8 7.4 54 263-316 87-140 (144)
177 PF05055 DUF677: Protein of un 26.6 6.5E+02 0.014 26.7 10.8 80 219-299 237-316 (336)
178 TIGR00293 prefoldin, archaeal 26.5 3.2E+02 0.007 23.9 7.4 25 263-287 85-109 (126)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.5 4.8E+02 0.01 23.5 18.0 14 323-336 117-130 (132)
180 PRK11281 hypothetical protein; 26.5 1.3E+03 0.028 28.5 21.2 46 272-317 136-181 (1113)
181 PF03429 MSP1b: Major surface 26.4 1.2E+02 0.0026 33.7 5.5 82 252-333 146-239 (726)
182 PF13747 DUF4164: Domain of un 26.1 4.2E+02 0.0092 22.7 8.5 15 264-278 8-22 (89)
183 KOG3684 Ca2+-activated K+ chan 25.9 6.1E+02 0.013 28.4 10.6 60 187-254 390-449 (489)
184 PF05701 WEMBL: Weak chloropla 25.8 9.5E+02 0.021 26.7 33.2 70 350-419 373-442 (522)
185 smart00502 BBC B-Box C-termina 25.8 4E+02 0.0086 22.3 13.2 39 247-285 22-60 (127)
186 PF12128 DUF3584: Protein of u 25.7 1.3E+03 0.029 28.3 36.1 17 148-164 223-239 (1201)
187 KOG2148 Exocyst protein Sec3 [ 25.6 1.2E+03 0.025 27.7 12.9 137 167-310 216-367 (867)
188 PF01080 Presenilin: Presenili 25.5 64 0.0014 35.0 3.3 47 424-470 322-372 (403)
189 COG0497 RecN ATPase involved i 25.4 1.1E+03 0.023 27.1 15.2 123 172-308 262-387 (557)
190 cd00890 Prefoldin Prefoldin is 25.3 4.4E+02 0.0096 22.7 10.1 29 268-296 91-119 (129)
191 KOG0971 Microtubule-associated 25.2 1.3E+03 0.029 28.3 31.1 153 158-318 265-439 (1243)
192 PF06103 DUF948: Bacterial pro 25.0 4E+02 0.0087 22.1 10.4 7 274-280 78-84 (90)
193 PLN03094 Substrate binding sub 24.8 9E+02 0.019 26.1 15.8 16 171-186 248-263 (370)
194 PF03908 Sec20: Sec20; InterP 24.8 3.5E+02 0.0077 22.8 7.1 33 330-362 31-63 (92)
195 COG3599 DivIVA Cell division i 24.7 7.1E+02 0.015 24.8 15.6 33 266-298 32-64 (212)
196 PF06160 EzrA: Septation ring 24.7 1E+03 0.022 26.7 32.9 25 392-416 383-407 (560)
197 PF03342 Rhabdo_M1: Rhabdoviru 24.4 3.3E+02 0.0072 27.1 7.5 50 359-411 80-129 (219)
198 PF00517 GP41: Retroviral enve 24.4 6.7E+02 0.015 24.5 11.3 18 346-363 51-70 (204)
199 PF06419 COG6: Conserved oligo 24.3 1.1E+03 0.024 26.9 14.8 150 167-319 50-218 (618)
200 KOG4286 Dystrophin-like protei 24.2 1.3E+03 0.028 27.7 16.0 95 211-320 244-343 (966)
201 PF05483 SCP-1: Synaptonemal c 24.2 1.2E+03 0.027 27.5 30.7 55 337-391 337-391 (786)
202 PF00957 Synaptobrevin: Synapt 24.1 4.1E+02 0.0089 21.9 8.7 25 272-296 32-56 (89)
203 PF07527 Hairy_orange: Hairy O 24.0 33 0.00072 25.3 0.6 36 74-112 6-41 (43)
204 PF09602 PhaP_Bmeg: Polyhydrox 24.0 6.7E+02 0.015 24.3 20.8 59 297-368 79-137 (165)
205 PF11166 DUF2951: Protein of u 23.9 5.2E+02 0.011 23.1 8.8 46 166-211 8-53 (98)
206 PF04100 Vps53_N: Vps53-like, 23.5 8.9E+02 0.019 25.9 11.3 43 268-310 68-113 (383)
207 PF01608 I_LWEQ: I/LWEQ domain 23.2 6.6E+02 0.014 23.9 11.0 82 294-387 61-142 (152)
208 KOG4643 Uncharacterized coiled 23.2 1.5E+03 0.032 28.1 23.9 63 244-311 497-559 (1195)
209 KOG2911 Uncharacterized conser 22.9 1.1E+03 0.023 26.3 15.1 34 83-120 173-206 (439)
210 COG3937 Uncharacterized conser 22.7 5.9E+02 0.013 23.2 8.8 18 279-296 84-101 (108)
211 PF06109 HlyE: Haemolysin E (H 22.4 6.2E+02 0.014 25.5 9.1 60 258-317 113-172 (299)
212 COG4942 Membrane-bound metallo 22.3 1.1E+03 0.023 26.1 28.7 23 205-227 60-82 (420)
213 PF05483 SCP-1: Synaptonemal c 22.0 1.4E+03 0.03 27.2 24.2 31 292-322 370-400 (786)
214 KOG0980 Actin-binding protein 22.0 1.5E+03 0.032 27.6 29.9 31 167-197 331-361 (980)
215 PF08317 Spc7: Spc7 kinetochor 21.9 9E+02 0.019 25.0 26.7 82 254-339 146-227 (325)
216 COG3352 FlaC Putative archaeal 21.8 1.7E+02 0.0037 28.0 4.9 59 260-318 54-115 (157)
217 cd07673 F-BAR_FCHO2 The F-BAR 21.6 8.5E+02 0.018 24.6 22.3 129 268-411 64-198 (269)
218 PRK10807 paraquat-inducible pr 21.6 1.1E+03 0.024 26.5 12.0 106 171-282 415-525 (547)
219 PF02994 Transposase_22: L1 tr 21.5 2.4E+02 0.0051 30.0 6.5 26 271-296 165-190 (370)
220 PF12718 Tropomyosin_1: Tropom 21.5 6.5E+02 0.014 23.3 18.6 8 276-283 96-103 (143)
221 KOG0812 SNARE protein SED5/Syn 21.3 9.9E+02 0.022 25.3 17.4 57 324-390 209-267 (311)
222 PF13270 DUF4061: Domain of un 21.3 5.5E+02 0.012 22.3 8.3 41 221-261 9-55 (90)
223 PF05064 Nsp1_C: Nsp1-like C-t 21.0 1.3E+02 0.0027 26.9 3.8 54 179-232 53-106 (116)
224 PF09403 FadA: Adhesion protei 21.0 6.6E+02 0.014 23.1 13.5 50 235-284 44-102 (126)
225 PF02646 RmuC: RmuC family; I 20.7 5.1E+02 0.011 26.6 8.6 12 274-285 51-62 (304)
226 PF03114 BAR: BAR domain; Int 20.5 6.6E+02 0.014 22.9 23.6 183 251-434 5-215 (229)
227 PF09451 ATG27: Autophagy-rela 20.4 82 0.0018 31.7 2.7 13 431-443 206-218 (268)
228 PF03882 KicB: KicB killing fa 20.4 1.2E+03 0.026 25.9 13.0 23 302-324 250-272 (440)
229 PRK03100 sec-independent trans 20.3 5.3E+02 0.011 24.2 7.7 29 268-296 25-53 (136)
230 KOG2604 Subunit of cis-Golgi t 20.3 1.5E+03 0.032 26.9 13.0 110 136-269 88-202 (733)
231 PRK05431 seryl-tRNA synthetase 20.2 9.4E+02 0.02 26.0 10.8 41 283-323 71-111 (425)
232 TIGR02780 TrbJ_Ti P-type conju 20.2 8.7E+02 0.019 24.2 22.9 27 330-356 175-201 (246)
No 1
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=99.46 E-value=1e-08 Score=111.04 Aligned_cols=102 Identities=20% Similarity=0.370 Sum_probs=81.3
Q ss_pred cCCCCchHHHHHHHHhccc---hhhhccHhHHHHHHHHhhccchhhcCCCCCC-CCCCcchHhHhhhcC--ChHHHHHHH
Q 012087 72 LIGSNACWQNAYRHLFAGC---SEIIAIEEKRSRFAWHLSDCFQKDSGRPAFP-NCDQKSAMINCLKKI--DDEEHKIYL 145 (471)
Q Consensus 72 l~~~~~CW~~Al~~L~~~C---~~L~~~de~qSrLAl~LtNCfle~SGR~~fp-~C~~~~si~~Ct~~M--dd~af~vY~ 145 (471)
+.+.+.|++.|+..+-+.| .... +-+.|.+.|++|+-|.++.+|-. +| .|.. .++..|+..| ++..|.+|.
T Consensus 59 l~~~s~C~~~A~~~l~~~C~~~~g~e-sid~rv~~Ai~LsiCEle~a~~~-iP~~C~~-~~~~~Cl~~L~~s~q~Wttys 135 (544)
T PF04163_consen 59 LFLKSSCHRDALRSLIPQCQLLDGVE-SIDDRVSSAIKLSICELENAGIE-IPSECSP-GSLDSCLRALESSPQWWTTYS 135 (544)
T ss_pred hccCCcHHHHHHHHHHHhhcCCCCcc-cHHHHHHHHHHHHhhhcccCCCC-CCcccCc-ccHHHHHHHhcCCcHHHHhhh
Confidence 3467899999999999999 2222 22378888999999999999963 43 5888 6799999988 899999999
Q ss_pred HHHHhHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 012087 146 AFLLETNSICYQLQAHGFQYETERLVNELKK 176 (471)
Q Consensus 146 eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~ 176 (471)
-+|.++..||+..+....+++.=.+-..+.+
T Consensus 136 ~~~~~~~~iC~a~r~~~eKeqiL~ly~niT~ 166 (544)
T PF04163_consen 136 GYYQNALVICHAARLPYEKEQILELYQNITE 166 (544)
T ss_pred hhHhhHHHHHHHccCchhHHHHHHHHHHHHH
Confidence 9999999999999988777764333333333
No 2
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=97.17 E-value=0.51 Score=50.97 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEA 350 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~a 350 (471)
+.|-.+++|+.+|.+.+.+-.++|..+-+.....+......+ +.++.+++....-.......+..+..-.+-|+..
T Consensus 392 rGFAVVA~EVr~LA~~t~~st~~I~~~i~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 467 (553)
T PRK15048 392 RGFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLV----ESAGETMNNIVNAVTRVTDIMGEIASASDEQSRG 467 (553)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777765544444433322222 2333444444444444444444444444445555
Q ss_pred HHHHHHHHHHHHHH
Q 012087 351 LAESRNTLQELAEY 364 (471)
Q Consensus 351 leesr~tiq~~~~~ 364 (471)
.++....+..+.+.
T Consensus 468 ~~~i~~~~~~i~~~ 481 (553)
T PRK15048 468 IDQVALAVSEMDRV 481 (553)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555544444
No 3
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=97.04 E-value=0.71 Score=50.36 Aligned_cols=89 Identities=12% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHH
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEAL 351 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~al 351 (471)
.|-.+++|+.+|.+.+.+-.++|..+=+.....++.-...+ +.++.+++.-..-...-...++.+..-.+-|+.+.
T Consensus 395 GFAVVA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~ 470 (554)
T PRK15041 395 GFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLV----ESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGI 470 (554)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666554443333333322222 23333444444444444444555554444455555
Q ss_pred HHHHHHHHHHHHH
Q 012087 352 AESRNTLQELAEY 364 (471)
Q Consensus 352 eesr~tiq~~~~~ 364 (471)
++....+..+...
T Consensus 471 ~~i~~~i~~i~~~ 483 (554)
T PRK15041 471 DQVGLAVAEMDRV 483 (554)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 4
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=96.36 E-value=0.93 Score=42.73 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012087 278 KEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 278 ~~~e~l~~~~~~i~~~i~~ 296 (471)
.++..|.+.+.....+|++
T Consensus 133 ~~I~~la~~t~~~~~ev~~ 151 (262)
T smart00283 133 DEVRKLAERSAESAKEIES 151 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444333333333333
No 5
>PRK09793 methyl-accepting protein IV; Provisional
Probab=96.28 E-value=2.2 Score=46.25 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.|-.+.+|+.+|.+.+.+-.++|..+
T Consensus 391 GFAVVA~EVR~LAe~t~~a~~~I~~~ 416 (533)
T PRK09793 391 GFAVVAGEVRNLASRSAQAAKEIKGL 416 (533)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 6
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.86 E-value=1.8 Score=51.68 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ 341 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~ 341 (471)
.+.|+-.-+-.++..+.+.+-..|.+++-+--..-+...+++-++|.+.-++=++|++.|.+-+... .||+
T Consensus 1667 q~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL-~~Le 1737 (1758)
T KOG0994|consen 1667 QKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL-AGLE 1737 (1758)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh-hhHH
Confidence 3334433333344444444444444444433334444444444555555555555555555544443 4444
No 7
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.82 E-value=1.1 Score=51.22 Aligned_cols=82 Identities=16% Similarity=0.277 Sum_probs=59.2
Q ss_pred HHHHhHhhHH---HHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHh
Q 012087 146 AFLLETNSIC---YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKG 222 (471)
Q Consensus 146 eF~~ht~sIC---~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~ 222 (471)
+|+.++..++ |..+++.-+.+.++=|+.|..-...+.+.|..+.+..+.|.+....+.+-++.+...++.|.+=.+.
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777 5566778888888888888888888888888888888888777777666666666666666554444
Q ss_pred HHHHH
Q 012087 223 VRDLM 227 (471)
Q Consensus 223 v~~~i 227 (471)
|-..+
T Consensus 619 vl~~l 623 (717)
T PF10168_consen 619 VLQLL 623 (717)
T ss_pred HHHHH
Confidence 43333
No 8
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=95.55 E-value=4.4 Score=43.81 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=13.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012087 265 GMATLIDAYSNLGKEVNNLRDEAIEIE 291 (471)
Q Consensus 265 g~a~~~e~y~~lg~~~e~l~~~~~~i~ 291 (471)
|.|.+-+.=+.|.+...+.+.+...+-
T Consensus 393 GFAVVA~EVr~LA~~t~~st~~I~~~i 419 (553)
T PRK15048 393 GFAVVAGEVRNLASRSAQAAKEIKALI 419 (553)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555544444333
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.83 E-value=10 Score=43.89 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=47.0
Q ss_pred HHHHHHHHH----HHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHHhhhHHHHHHHHHHHH
Q 012087 350 ALAESRNTL----QELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILA-AQEAFESKQASMFIALDKLFA 416 (471)
Q Consensus 350 aleesr~ti----q~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~-aqe~f~~kq~~if~~ld~l~~ 416 (471)
|++|+.+.= .+ -+|-..|.++|...-+++..+.+.+-+..+.... ..++|..--.++-..+.+||.
T Consensus 980 aiee~~~~~~~a~er-~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168 980 KIKELGPVNLAAIEE-YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFP 1050 (1179)
T ss_pred HHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776422 33 2345678888888888998888888777777774 578888666666666777765
No 10
>PRK09793 methyl-accepting protein IV; Provisional
Probab=94.82 E-value=7.4 Score=42.28 Aligned_cols=21 Identities=5% Similarity=0.211 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012087 344 TKFQSEALAESRNTLQELAEY 364 (471)
Q Consensus 344 ~~~q~~aleesr~tiq~~~~~ 364 (471)
.+-|+...++....+..+.+.
T Consensus 459 ~~e~~~~~~~i~~~i~~i~~~ 479 (533)
T PRK09793 459 SEEQRRGIEQVAQAVSQMDQV 479 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 11
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=7.5 Score=40.25 Aligned_cols=150 Identities=20% Similarity=0.306 Sum_probs=89.8
Q ss_pred HHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHH---HHhh---HHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012087 294 ISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTA---LESL---QLLTKFQSEALAESRNTLQELAEYGHK 367 (471)
Q Consensus 294 i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a---~~~l---~~l~~~q~~aleesr~tiq~~~~~~~~ 367 (471)
-+.+..++-..|.+++.+..++-.....-+..|-....|+... ++.+ .+...|..+|+..+-.+.+-|+|. +.
T Consensus 125 ~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Ei-q~ 203 (297)
T KOG0810|consen 125 TSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEI-QE 203 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHH-HH
Confidence 3344456667788888888888888888888888888773222 2222 366677778888666666777777 44
Q ss_pred hHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH-hhhHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHHHH
Q 012087 368 QQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE-SKQASMFIALDKLF----ALHNAMLL--ESRMIKAFFIYSLSIFI 440 (471)
Q Consensus 368 ~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~-~kq~~if~~ld~l~----~l~n~~l~--E~~~~k~f~~y~~~~~~ 440 (471)
-+.++...-..|++.|+ ||---.-+.++|.+-. .=-.++-.|.|=.. .+.-|+-. -.|-+|-+.+++++|++
T Consensus 204 Rh~~ik~LEksi~ELhq-lFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~ 282 (297)
T KOG0810|consen 204 RHDEIKKLEKSIRELHQ-LFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIII 282 (297)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHH
Confidence 45678888888888888 3333333334443321 11111222222111 13334444 45666777888888777
Q ss_pred HHHHh
Q 012087 441 IYMLT 445 (471)
Q Consensus 441 iym~t 445 (471)
+.++-
T Consensus 283 ~v~v~ 287 (297)
T KOG0810|consen 283 VVLVV 287 (297)
T ss_pred HHHhh
Confidence 76553
No 12
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.70 E-value=19 Score=42.79 Aligned_cols=168 Identities=16% Similarity=0.217 Sum_probs=86.8
Q ss_pred HHHhHhhHHHHHHhhhhHHHH-----HHHHHHHHHhHH----HHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHH
Q 012087 147 FLLETNSICYQLQAHGFQYET-----ERLVNELKKSAD----YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVA 217 (471)
Q Consensus 147 F~~ht~sIC~~Lq~e~Fq~~T-----E~tVnkL~~sS~----~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La 217 (471)
|-..++++|.||-++-=.+-+ +.+++....-.+ .+...|..+.+....|.+..+.-..+|..++...+.+.
T Consensus 136 fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~ 215 (1072)
T KOG0979|consen 136 FNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLE 215 (1072)
T ss_pred HhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445689999999987655444 334443332222 23444555556666666655555555555555555554
Q ss_pred HHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 218 QTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 218 ~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.-..++...-. +++-..+.+.-+.+.- =+...+-...+.+.+.+..+.|+.+-+++..+.+.-.+++++++.
T Consensus 216 kdVE~~rer~~--~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e- 287 (1072)
T KOG0979|consen 216 KDVERVRERER--KKSKIELLEKKKKWVE-----YKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE- 287 (1072)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHhccccc-----hHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh-
Confidence 44333333221 0000011110010000 001112233445556677777777777777777766666665554
Q ss_pred hhhhhHhHHHHHHHHhHhhhhhccchHH
Q 012087 298 GDAMFSSMEQLQRKADNIGSMAGDSLDK 325 (471)
Q Consensus 298 g~~~s~~m~~Lq~~a~~I~~~~~~Slen 325 (471)
+.+++...++--++++..+....+|
T Consensus 288 ---t~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 288 ---TRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666665
No 13
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=93.65 E-value=13 Score=40.68 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=22.0
Q ss_pred hHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Q 012087 323 LDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEE 371 (471)
Q Consensus 323 lenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qee 371 (471)
.+.|..-.+.=..++..+....+-.+.+.++...+...|.+.+..-++.
T Consensus 463 ~~eq~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~ 511 (554)
T PRK15041 463 SDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEA 511 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333333333444444444444445555555555555544444333
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.21 E-value=25 Score=42.67 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=65.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchH--------------HHHHh
Q 012087 274 SNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQS--------------TALES 339 (471)
Q Consensus 274 ~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~--------------~a~~~ 339 (471)
++|..++++-+..+.++....+.|-++|-.-=+.. ..|.+...++.+.+.-=+++|+-=. +-+.-
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq-~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQ-GEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666654433322 2333333344444443333332100 00111
Q ss_pred hH-HHHHHHHHHHH------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 012087 340 LQ-LLTKFQSEALA------ESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (471)
Q Consensus 340 l~-~l~~~q~~ale------esr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~ 401 (471)
|. .+.+++-+|++ ...+|+..-.+-++.-++.+-..|+.++-+..-|-+....-+.||+.-+
T Consensus 1624 L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe 1692 (1758)
T KOG0994|consen 1624 LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAE 1692 (1758)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 11 22333334444 4445555555566666777778888888877766555555566665444
No 15
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=92.39 E-value=11 Score=36.57 Aligned_cols=40 Identities=35% Similarity=0.566 Sum_probs=27.7
Q ss_pred HhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHH
Q 012087 327 QQLLHGQSTALESLQLLTKFQSEALAESRNTLQE-LAEYGHKQQEELLKRQEQLQ 380 (471)
Q Consensus 327 ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~-~~~~~~~~qeell~~Qe~~~ 380 (471)
-+||.||.+.-+ |-.+|||+ +.--|..-|-.|+++|+.+.
T Consensus 134 L~llE~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (189)
T TIGR02132 134 LELLEGQQKTQD--------------ELKETIQKQIKTQGEQLQAQLLEKQEALA 174 (189)
T ss_pred HHHHhcCccchh--------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 467888888744 44567777 55566667777888877654
No 16
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=92.24 E-value=9.5 Score=35.28 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhHH
Q 012087 172 NELKKSADYTEHKLEIIEEKSDT 194 (471)
Q Consensus 172 nkL~~sS~~a~e~Le~l~e~q~~ 194 (471)
+.+........+.++.+.+..++
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~ 41 (213)
T PF00015_consen 19 EEIQESIEEIAESIEELSESSED 41 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333
No 17
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.97 E-value=13 Score=36.41 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=56.6
Q ss_pred HHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHH
Q 012087 174 LKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQE 253 (471)
Q Consensus 174 L~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~ 253 (471)
|.+-.......++.+.+....|.+.-.++.+.+.++ +++.+-.|-|.+-+.|+......+-|+-+.+.+--.++..
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555444444444322 3445555667777777777777777777777666666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Q 012087 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRD 285 (471)
Q Consensus 254 ~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~ 285 (471)
++..+ ..+|+.+.+.+..+--+.+.++.
T Consensus 96 E~q~L----~~~i~~Lqeen~kl~~e~~~lk~ 123 (193)
T PF14662_consen 96 EQQSL----VAEIETLQEENGKLLAERDGLKK 123 (193)
T ss_pred HHHHH----HHHHHHHHHHHhHHHHhhhhHHH
Confidence 66543 34445555555554444444444
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.35 E-value=34 Score=39.89 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=12.8
Q ss_pred CCCCchHHHHHHHHhcc---chhh
Q 012087 73 IGSNACWQNAYRHLFAG---CSEI 93 (471)
Q Consensus 73 ~~~~~CW~~Al~~L~~~---C~~L 93 (471)
..++.+...++..+..+ |.++
T Consensus 606 i~~~~~~~~~~~~~lg~~~v~~~l 629 (1164)
T TIGR02169 606 VEFDPKYEPAFKYVFGDTLVVEDI 629 (1164)
T ss_pred ccCcHHHHHHHHHHCCCeEEEcCH
Confidence 34556667777776665 5544
No 19
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=90.95 E-value=11 Score=39.26 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012087 213 VQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRI 258 (471)
Q Consensus 213 ~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m 258 (471)
+.+|..+..++...=+.|.+..+....+..+|+..+.++.+.|.+.
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~ 250 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRC 250 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777777777777888888777777777765
No 20
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=89.75 E-value=22 Score=35.36 Aligned_cols=46 Identities=13% Similarity=0.252 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHH
Q 012087 182 EHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM 227 (471)
Q Consensus 182 ~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i 227 (471)
.+.+..+..-.+.+-....++...+.++..-...+++..+.+...+
T Consensus 170 ~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v 215 (291)
T TIGR00996 170 RNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLL 215 (291)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 21
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=89.72 E-value=2.4 Score=40.02 Aligned_cols=38 Identities=32% Similarity=0.383 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhh
Q 012087 161 HGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSS 199 (471)
Q Consensus 161 e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~ 199 (471)
+-|+..+...||++..+ ....+.++.+.++++.+.+..
T Consensus 6 ~e~~~~~~~~~~~~~~~-~~~~Ev~~aik~~sd~~~~~l 43 (155)
T PF07464_consen 6 QEFQKEFQEQVNKLLGS-QNQQEVVKAIKEQSDSVAQQL 43 (155)
T ss_dssp HHHHHHHHHHHHHHTSS---SS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHhHHHHHHHH
Confidence 34555566666666654 444444555555555555433
No 22
>PRK11637 AmiB activator; Provisional
Probab=88.70 E-value=36 Score=36.20 Aligned_cols=36 Identities=14% Similarity=0.066 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 012087 239 NQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYS 274 (471)
Q Consensus 239 e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~ 274 (471)
+..++|...+.++...+.++.+.-+.=-.++...|.
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554444444445555665
No 23
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.61 E-value=20 Score=33.11 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFS 303 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~ 303 (471)
-+.|..+++++.+|-+.+.+...+|...=+.+..
T Consensus 74 G~gF~vvA~eir~LA~~t~~~~~~I~~~i~~i~~ 107 (213)
T PF00015_consen 74 GRGFAVVADEIRKLAEQTSESAKEISEIIEEIQE 107 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhh
Confidence 4677778888888877777777766664333333
No 24
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.50 E-value=31 Score=35.20 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
+.|-.++.++.+|.+.+.....+|..+-
T Consensus 271 rGFaVVAdEVR~LA~~s~~st~~I~~~i 298 (408)
T COG0840 271 RGFAVVADEVRKLAERSADSAKEIGLLI 298 (408)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888887776666666666544
No 25
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.34 E-value=20 Score=38.11 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=13.9
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 012087 158 LQAHGFQYETERLVNELKK 176 (471)
Q Consensus 158 Lq~e~Fq~~TE~tVnkL~~ 176 (471)
+....|+-+.||..-+|.-
T Consensus 191 vd~~eWklEvERV~PqLKv 209 (359)
T PF10498_consen 191 VDPAEWKLEVERVLPQLKV 209 (359)
T ss_pred CCHHHHHHHHHHHhhhhee
Confidence 4556788888888888854
No 26
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=88.24 E-value=7.2 Score=36.84 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccc
Q 012087 254 GQVRIKEKLDEGMATLIDAYS----NLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (471)
Q Consensus 254 ~q~~m~~kid~g~a~~~e~y~----~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~S 322 (471)
.+..|.+.|+++-..+.+++. .|.+.+++|+..--+++.+....++.|-+-+++|-.-++..+.-+++-
T Consensus 46 ~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 46 VSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554333333333 355666666665556666666666666666666655554444444433
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.32 E-value=39 Score=34.94 Aligned_cols=77 Identities=8% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHhHhhHHHHHHhhhhHHHH----HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHH
Q 012087 143 IYLAFLLETNSICYQLQAHGFQYET----ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQ 218 (471)
Q Consensus 143 vY~eF~~ht~sIC~~Lq~e~Fq~~T----E~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~ 218 (471)
.--.-|.-+..-|-..--..|.+-= +.+.+.|.........-.+.+......|-+-..++.+..+.++....+|.+
T Consensus 119 ~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~ 198 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQ 198 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555444444444322 555555555555555555555544444433333333333333444444443
Q ss_pred H
Q 012087 219 T 219 (471)
Q Consensus 219 t 219 (471)
.
T Consensus 199 ~ 199 (325)
T PF08317_consen 199 L 199 (325)
T ss_pred H
Confidence 3
No 28
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.19 E-value=77 Score=38.26 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 398 EAFESKQASMFIALDKLFALHNAMLLESRMI 428 (471)
Q Consensus 398 e~f~~kq~~if~~ld~l~~l~n~~l~E~~~~ 428 (471)
+.....+...+.+.+++..+++.|--=+.-+
T Consensus 429 ~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l 459 (1074)
T KOG0250|consen 429 EKAKEEEEEKEHIEGEILQLRKKIENISEEL 459 (1074)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678888888999999999887644333
No 29
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=85.21 E-value=16 Score=30.92 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q 012087 429 KAFFIYSLSIFIIY 442 (471)
Q Consensus 429 k~f~~y~~~~~~iy 442 (471)
=+|+||+++++.|.
T Consensus 75 ~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 75 FAFLFFLLVVLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 35666666665553
No 30
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=84.88 E-value=80 Score=37.16 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=6.4
Q ss_pred HHHHhhHHHHHhhHhhh
Q 012087 187 IIEEKSDTLLQSSNQIH 203 (471)
Q Consensus 187 ~l~e~q~~Lle~~~~~~ 203 (471)
....+.+++.+..++++
T Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (910)
T TIGR00833 516 LDGENLGQVSLAVRLMQ 532 (910)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=83.52 E-value=1.1e+02 Score=36.95 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=29.7
Q ss_pred cCCCCchHHHHHHHHhc---cchhhhccHh-HHHHHH------HHhhccchhhcCCCCC
Q 012087 72 LIGSNACWQNAYRHLFA---GCSEIIAIEE-KRSRFA------WHLSDCFQKDSGRPAF 120 (471)
Q Consensus 72 l~~~~~CW~~Al~~L~~---~C~~L~~~de-~qSrLA------l~LtNCfle~SGR~~f 120 (471)
+...++++..|+..+.. =|.++ +.. ...+.. +.|.++....+|--+-
T Consensus 598 li~~d~~~~~~~~~~l~~t~Iv~~l--~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tG 654 (1163)
T COG1196 598 LIDFDPKYEPAVRFVLGDTLVVDDL--EQARRLARKLRIKYRIVTLDGDLVEPSGSITG 654 (1163)
T ss_pred HhcCCHHHHHHHHHHhCCeEEecCH--HHHHHHHHhcCCCceEEecCCcEEeCCeeeec
Confidence 45778899999999986 46655 221 122222 5567888887776544
No 32
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.07 E-value=98 Score=35.88 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 171 VNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 171 VnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
++.|.++++...++++.+.++|+.|.+
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 33
>PRK11637 AmiB activator; Provisional
Probab=82.69 E-value=71 Score=34.02 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 236 VVYNQSKEIAASQTELQEGQVRIKEKLDE 264 (471)
Q Consensus 236 ~i~e~~keIa~sq~el~~~q~~m~~kid~ 264 (471)
.|.+..++|...+.++...+..|.+.+.+
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666555555443
No 34
>PRK10698 phage shock protein PspA; Provisional
Probab=81.99 E-value=56 Score=32.28 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
+..+..+|+..=-.=+......++.+...|......+++|++....+..+|...-
T Consensus 79 l~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 79 LRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444322333446677777888888888888888887777777776543
No 35
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.43 E-value=55 Score=31.91 Aligned_cols=101 Identities=9% Similarity=0.155 Sum_probs=60.8
Q ss_pred hhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 012087 204 DSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNL 283 (471)
Q Consensus 204 dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l 283 (471)
.+|..++.....+..-.......+.++...-... +..+..+|+..=..=+......++.+..+|..+...+++|
T Consensus 45 ~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A------l~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l 118 (219)
T TIGR02977 45 TTSARTIADKKELERRVSRLEAQVADWQEKAELA------LSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKL 118 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455554444443333 3334444444333344555677788889999999999999
Q ss_pred HHHHHHHHHHHHHhh---hhhhHhHHHHHH
Q 012087 284 RDEAIEIEKEISKAG---DAMFSSMEQLQR 310 (471)
Q Consensus 284 ~~~~~~i~~~i~~vg---~~~s~~m~~Lq~ 310 (471)
+....+++.+|..+- +.|..+.+..+.
T Consensus 119 ~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 119 QEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888765 455555555444
No 36
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=81.39 E-value=1.3e+02 Score=36.30 Aligned_cols=126 Identities=11% Similarity=0.166 Sum_probs=80.9
Q ss_pred HHHHHhhHHHHHHHHHHHH----HHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHH-HHhhHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAI----EIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTA-LESLQLLT 344 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~----~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a-~~~l~~l~ 344 (471)
...|+.+-+.++++++.+. .+.+.+....+.+.+.-.+.+....+|.........+++.++++.... ..+.+.-.
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~~~~~~ 800 (1041)
T KOG0243|consen 721 STFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSAVNSRE 800 (1041)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4556668888888887544 455666666677777666788889999999999999999999999877 45555322
Q ss_pred HHHH---HHHHHHHHHHHHHHHH--------hHHhHHHHHHHHHHHHHHHHhhhhchHHHHH
Q 012087 345 KFQS---EALAESRNTLQELAEY--------GHKQQEELLKRQEQLQEVHDHLFKNSRSILA 395 (471)
Q Consensus 345 ~~q~---~aleesr~tiq~~~~~--------~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~ 395 (471)
..-. .+-++.........++ ......-.-++|..+.-+|..+++++.++-.
T Consensus 801 ~~~~e~~~~~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 862 (1041)
T KOG0243|consen 801 SNLTESVSVMQNLSDDLKTIWQTLGKQNENHHNEVLSAIEEKQQAMKSVLKELLENAESQVD 862 (1041)
T ss_pred hHHHHhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 1222222222222222 2223444556778888888888888887666
No 37
>COG1511 Predicted membrane protein [Function unknown]
Probab=80.82 E-value=70 Score=37.14 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=63.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHH
Q 012087 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAAS 247 (471)
Q Consensus 168 E~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~s 247 (471)
=.+|+++......+.+.+..+.+...++....+++.+.+. .+........+.+..+..+...+.+....|.++
T Consensus 170 ~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~l~d~l~~i~~~ 242 (780)
T COG1511 170 FPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLN-------TLNNSSATFSDGLNALTSGLTTLTDGLNQLDSG 242 (780)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHH-------HHHHHHHhhhhhHHHHhhhhHHHhhhHHHHHhh
Confidence 4578888888888888888888888888777766665442 222222223344444444444444554444444
Q ss_pred HHHHHH---HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 248 QTELQE---GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 248 q~el~~---~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
...+.. .-.+..++|+.|...+...-..+.++++.+..-...|..-+..+.
T Consensus 243 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~g~~ql~~~~~~~~ 296 (780)
T COG1511 243 LGTLAAGIGELKQGAEQLNEGIGEFSSGLSELNSGVQDLAAGVPQLNQGISALA 296 (780)
T ss_pred hhHHhhhhHHHHHHHHHHHhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433333 333333444444444444444444444433333333333333333
No 38
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=80.76 E-value=30 Score=31.77 Aligned_cols=51 Identities=20% Similarity=0.418 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 243 EIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 243 eIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.+++...||..--..+-.|+|+..+ .-+.+.+++..++.+...|..++..|
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~e----i~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKE----ISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444445554444444444444433 33344444455555555555554443
No 39
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.57 E-value=1e+02 Score=35.07 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=51.2
Q ss_pred HhHhhhcCChH-----------HHHHHHHHHHhHhhHHHHHHhhhhHHH--HHHHHHHHHHhHHHHHHHHHHHHHhhHHH
Q 012087 129 MINCLKKIDDE-----------EHKIYLAFLLETNSICYQLQAHGFQYE--TERLVNELKKSADYTEHKLEIIEEKSDTL 195 (471)
Q Consensus 129 i~~Ct~~Mdd~-----------af~vY~eF~~ht~sIC~~Lq~e~Fq~~--TE~tVnkL~~sS~~a~e~Le~l~e~q~~L 195 (471)
-.+|.+-+.+. +..|--+|--|++.+|-....|. |+. .++-+..+.+.++...++.+.+.++|+.|
T Consensus 557 ~~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~Ql-Q~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L 635 (741)
T KOG4460|consen 557 PEECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQL-QDLSYCREERKSLREMAERLADRYEEAKEKQEDL 635 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 46676655432 23333455668888888765543 332 36778888999999999999999999998
Q ss_pred HHhhHhhh
Q 012087 196 LQSSNQIH 203 (471)
Q Consensus 196 le~~~~~~ 203 (471)
.+-++++.
T Consensus 636 ~~~~~~L~ 643 (741)
T KOG4460|consen 636 MNRMKKLL 643 (741)
T ss_pred HHHHHHHH
Confidence 88766543
No 40
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=79.30 E-value=1.3e+02 Score=34.80 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 250 ELQEGQVRIKEKLDEGMA---TLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 250 el~~~q~~m~~kid~g~a---~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
+++.....+++.+|-+|+ ..++....|+.|+|++...+.+|+.+=..
T Consensus 106 ~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~ 155 (683)
T PF08580_consen 106 DVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHS 155 (683)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556666777778888877 66788888999999999999888865433
No 41
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=79.19 E-value=79 Score=32.31 Aligned_cols=105 Identities=18% Similarity=0.240 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHh
Q 012087 264 EGMATLIDAYSNLGKEVNNLRDEAIEI----EKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALES 339 (471)
Q Consensus 264 ~g~a~~~e~y~~lg~~~e~l~~~~~~i----~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~ 339 (471)
.|++.+-+.=+.|+....+.+.+..++ ..++..+.+.|..-.+...+.+..+ +.++.+++.--.....-...+.+
T Consensus 271 rGFaVVAdEVR~LA~~s~~st~~I~~~i~~iq~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~i~~i~~~~~~ 349 (408)
T COG0840 271 RGFAVVADEVRKLAERSADSAKEIGLLIEEIQNEAADAVEHMEESASEVSEGVKLV-EETGSSLGEIAAAIEEVSQLISE 349 (408)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666555554444333 3344444444433333333333211 12222233322333333333333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 012087 340 LQLLTKFQSEALAESRNTLQELAEYGHKQQ 369 (471)
Q Consensus 340 l~~l~~~q~~aleesr~tiq~~~~~~~~~q 369 (471)
...-.+-|....++....++.+.+.....-
T Consensus 350 i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 350 IAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566677777777666654443
No 42
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.96 E-value=1.2e+02 Score=34.08 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHH-------HHHHHHHhHhHHHHHHHHHHhH
Q 012087 162 GFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHR-------VQNVAQTAKGVRDLMDILSRHS 234 (471)
Q Consensus 162 ~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q-------~~~La~tsk~v~~~i~dl~~~s 234 (471)
+-+..-++++++. ..+.......+.+.++=..+-...++...+.+.+++. ..+|.......++.|..|...-
T Consensus 275 ~lk~~n~~l~e~i-~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~ 353 (622)
T COG5185 275 NLKTQNDNLYEKI-QEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNI 353 (622)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344445555554 3456666667777766666655555555444433333 2223333333333333222222
Q ss_pred HHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 235 EVVYNQSKE--IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 235 ~~i~e~~ke--Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
..++-+.++ |+..+-+ .+.+=|++ +.+.+.-++-+.++|+.++.+-..++....+++-.+++++-+.+
T Consensus 354 d~L~~q~~kq~Is~e~fe---~mn~Ere~-------L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~ 423 (622)
T COG5185 354 DELHKQLRKQGISTEQFE---LMNQEREK-------LTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLI 423 (622)
T ss_pred HHHHHHHHhcCCCHHHHH---HHHHHHHH-------HHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322222 4443333 22222333 34555666777788888888777788877888888999999888
Q ss_pred hHhhhh
Q 012087 313 DNIGSM 318 (471)
Q Consensus 313 ~~I~~~ 318 (471)
+.|+-.
T Consensus 424 ~~i~~~ 429 (622)
T COG5185 424 QNITRS 429 (622)
T ss_pred HHhccc
Confidence 888765
No 43
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.95 E-value=63 Score=31.07 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
+..+..+|+..=..=+..+++.++.+...+......+++|++....++.+|..+
T Consensus 78 l~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 78 LAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455554444444555666677788888888888888888777777777663
No 44
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=78.74 E-value=72 Score=31.58 Aligned_cols=96 Identities=10% Similarity=0.207 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHH
Q 012087 165 YETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEI 244 (471)
Q Consensus 165 ~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keI 244 (471)
..+..++.+....+....++...+.+...++......+.. +.++|..-.+.+...+++..+....+.++..+|
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~-------e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLER-------EIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777777777777777776665554 444554445555555555555556677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 012087 245 AASQTELQEGQVRIKEKLDEGMA 267 (471)
Q Consensus 245 a~sq~el~~~q~~m~~kid~g~a 267 (471)
.....++.-...+|-+.++.-++
T Consensus 97 ~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 97 EETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777766555
No 45
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.51 E-value=53 Score=34.91 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=17.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.+.+.|++...++..++.+-.+|..+++.|
T Consensus 284 ~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 284 EVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666555555555553
No 46
>PRK05260 condesin subunit F; Provisional
Probab=78.15 E-value=1.1e+02 Score=33.47 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=90.8
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHH
Q 012087 151 TNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDIL 230 (471)
Q Consensus 151 t~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl 230 (471)
+.-+=||+++..|- |+++==.|+.-+.+..+.++...++.++ .++-++|..-+
T Consensus 108 ~gi~dyyirqrefs--~l~LS~qls~va~El~~a~~aA~e~gd~----------------------~~Wr~~V~a~L--- 160 (440)
T PRK05260 108 IGITDYYIRQREFS--TLRLSMQLSIVAGELKRAADAAEEGGDE----------------------FHWRRNVFAPL--- 160 (440)
T ss_pred ccchHHHHhhHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCH----------------------HHHHHHhHhcC---
Confidence 34456899999998 6777667766666666666555554332 22333333333
Q ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 012087 231 SRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQR 310 (471)
Q Consensus 231 ~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~ 310 (471)
.-.-++|++ .|.-+|+-+-+-|..+++.|.+ .++..|+.--..-+.|-+++ +.-+.+||+
T Consensus 161 kySVaeifd---~Idl~QR~mDeqQ~~vk~eIA~---LL~qdW~~AI~~Ce~LLdEt--------------sgtLRELqd 220 (440)
T PRK05260 161 KYSVAEIFD---SIDLTQRLMDEQQQQVKDDIAQ---LLNKDWRAAISSCELLLSET--------------SGTLRELQD 220 (440)
T ss_pred cCcHHHHHh---hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------------HhHHHHHHH
Confidence 111222332 2333344333444555544432 23333433333334444433 333334444
Q ss_pred HHhHhhhhhccchHHHHhHhhchHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 012087 311 KADNIGSMAGDSLDKQQQLLHGQSTALE--SLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHD 384 (471)
Q Consensus 311 ~a~~I~~~~~~SlenQ~~LL~gQ~~a~~--~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~ 384 (471)
+-.--|+ +-|.+||.=|..++. ++..+. +.+..--+-+-+++.+|+.-+..... =.+.+|+
T Consensus 221 tL~aagD------~lqaqLl~IQ~~~~~~~~l~~vd----~~~~~Lq~kLDRI~sWGqqaidlWig---YdrhVHk 283 (440)
T PRK05260 221 TLEAAGD------KLQANLLRIQDATMGRDDLDFVD----RLVFDLQSKLDRIISWGQQAIDLWIG---YDRHVHK 283 (440)
T ss_pred HHHHhHH------HHHHHHHHHHHHHhcCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 4433333 447777777777743 222332 35566666777889998877665554 3567777
No 47
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=77.71 E-value=69 Score=33.79 Aligned_cols=118 Identities=19% Similarity=0.308 Sum_probs=68.1
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q 012087 160 AHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239 (471)
Q Consensus 160 ~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e 239 (471)
+..|..+.||..-+|.-+-..-.+--. + -++.+++--.|+.+.++++...++.+|+...-..
T Consensus 200 a~eW~lEvERVlPQLKVt~k~DakDWR---------------~--H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~L- 261 (384)
T KOG0972|consen 200 AIEWKLEVERVLPQLKVTLKQDAKDWR---------------L--HLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKAL- 261 (384)
T ss_pred HHHHHHHHHHhhhhheehhccccHHHH---------------H--HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-
Confidence 456777777777777655433221110 0 1223334455667777888888887776554333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 240 QSKEIAASQTELQEGQVRIKEKLD---EGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 240 ~~keIa~sq~el~~~q~~m~~kid---~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
..|+.--..|-...+.|-.+.. +-.+.+.+.|++...+|++.|..-.+|-.+|+.+
T Consensus 262 --EkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~ 320 (384)
T KOG0972|consen 262 --EKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQL 320 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3343333333222233333322 3345678889999999999988777777777773
No 48
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=76.79 E-value=47 Score=33.60 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 012087 409 IALDKLFA-LHNAMLLESRMIKAFFIYSLS 437 (471)
Q Consensus 409 ~~ld~l~~-l~n~~l~E~~~~k~f~~y~~~ 437 (471)
..+||++. +-++||.==+..-.|||||+.
T Consensus 199 ~~~eR~~ls~~r~vL~nr~~R~~f~~Y~l~ 228 (248)
T PF08172_consen 199 SPPERIFLSLTRFVLSNRTTRMLFFFYCLG 228 (248)
T ss_pred ChHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 45888877 888998866666678899876
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=76.00 E-value=1.9e+02 Score=35.11 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=51.9
Q ss_pred hhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HH
Q 012087 202 IHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL----------ID 271 (471)
Q Consensus 202 ~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~----------~e 271 (471)
..+.|.+.........+-.+.+..-++......+++....++|.+.-.++.+...-+.+.+++..+.+ .+
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~ 358 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKE 358 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555555555555555556666666677777777777777777666665543 22
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.|+..-..+++++.....++++|..
T Consensus 359 ~~~~~~n~i~~~k~~~d~l~k~I~~ 383 (1074)
T KOG0250|consen 359 EIREIENSIRKLKKEVDRLEKQIAD 383 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555444
No 50
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.55 E-value=1e+02 Score=31.74 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHH
Q 012087 258 IKEKLDEGMATLIDAYSNLGKEVNNL 283 (471)
Q Consensus 258 m~~kid~g~a~~~e~y~~lg~~~e~l 283 (471)
+..+|++--.+|.+--+.|++.+..+
T Consensus 85 l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 85 LQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666555444
No 51
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=75.03 E-value=15 Score=40.41 Aligned_cols=112 Identities=12% Similarity=0.302 Sum_probs=80.5
Q ss_pred HHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHH---HHHHHhHHHHHHhHHHHHHHHHHH
Q 012087 175 KKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM---DILSRHSEVVYNQSKEIAASQTEL 251 (471)
Q Consensus 175 ~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i---~dl~~~s~~i~e~~keIa~sq~el 251 (471)
-..+..-.+.|+.=++.+.+|+.. ++.|.+.|..++=.-.+-+ .+|+..++.|.|..++=-+.+.++
T Consensus 130 ~s~~~~~~~~lekq~e~qkeLi~Q----------Lk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i 199 (621)
T KOG3759|consen 130 RSESESGNDVLEKQNERQKELIKQ----------LKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDI 199 (621)
T ss_pred cccccccchhhhhhcchHHHHHHH----------HHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCc
Confidence 345555666777778888888763 3456666666554333311 267888888888777755555555
Q ss_pred -HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 252 -QEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 252 -~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
+..++++++.+|++++.++.-++.=++=+++|+-.--|++.=|-=
T Consensus 200 ~~lsteelr~qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFInF 245 (621)
T KOG3759|consen 200 DKLSTEELRRQVDDALKQLVNPFKEKEQLVDQLKTQITDLERFINF 245 (621)
T ss_pred ccccHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999999999998877777766654
No 52
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.55 E-value=71 Score=29.39 Aligned_cols=34 Identities=15% Similarity=0.376 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 263 DEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 263 d~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
++.++-+.+--..++..++.+...+..++.+|..
T Consensus 88 ~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 88 KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555544443
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.21 E-value=1.3e+02 Score=32.46 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 012087 428 IKAFFIYSLSIFIIY 442 (471)
Q Consensus 428 ~k~f~~y~~~~~~iy 442 (471)
.+.++-||.-.+--|
T Consensus 422 ~~~~l~~~n~~~~~~ 436 (562)
T PHA02562 422 IKKYIPYFNKQINHY 436 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 54
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=73.38 E-value=91 Score=30.09 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=16.3
Q ss_pred hHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHH
Q 012087 302 FSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALE 338 (471)
Q Consensus 302 s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~ 338 (471)
++.|....+....|....-+.|+-|+.++.-+...++
T Consensus 18 ~~sls~~~~~~kqve~~~l~~lkqqqd~itk~veeLe 54 (165)
T PF09602_consen 18 SQSLSLFASFMKQVEQQTLKKLKQQQDWITKQVEELE 54 (165)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433
No 55
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=72.98 E-value=2e+02 Score=33.79 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhh
Q 012087 351 LAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL 386 (471)
Q Consensus 351 leesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l 386 (471)
+++....+..+.+--...+.++...++++....+.|
T Consensus 450 l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l 485 (1164)
T TIGR02169 450 IKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333444445555555555555544
No 56
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=72.79 E-value=1.2e+02 Score=31.38 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhHHHHHHhHHH----HHH-------HHHHHHHHHHHHHHHHHHhHHHH----H--HHHHhhHHHHHHHHH
Q 012087 223 VRDLMDILSRHSEVVYNQSKE----IAA-------SQTELQEGQVRIKEKLDEGMATL----I--DAYSNLGKEVNNLRD 285 (471)
Q Consensus 223 v~~~i~dl~~~s~~i~e~~ke----Ia~-------sq~el~~~q~~m~~kid~g~a~~----~--e~y~~lg~~~e~l~~ 285 (471)
+.+++.|=+.+..+|.|+.++ +.. +-+...-...+...+++.++.+. . +.-+++..+|..|++
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkd 171 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKD 171 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344555555666788888776 211 11222223344555566655533 2 334569999999999
Q ss_pred HHHHHHHHHHH
Q 012087 286 EAIEIEKEISK 296 (471)
Q Consensus 286 ~~~~i~~~i~~ 296 (471)
++-|+.+|+-.
T Consensus 172 Eardlrqelav 182 (333)
T KOG1853|consen 172 EARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 57
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.49 E-value=2.6e+02 Score=34.49 Aligned_cols=13 Identities=15% Similarity=0.437 Sum_probs=7.0
Q ss_pred cCCCCCCCCCCcc
Q 012087 115 SGRPAFPNCDQKS 127 (471)
Q Consensus 115 SGR~~fp~C~~~~ 127 (471)
...+..|.|...+
T Consensus 675 ~~~~~C~LC~R~f 687 (1311)
T TIGR00606 675 ENQSCCPVCQRVF 687 (1311)
T ss_pred ccCCcCCCCCCCC
Confidence 3445556666544
No 58
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.50 E-value=1.2e+02 Score=30.23 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH----
Q 012087 164 QYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN---- 239 (471)
Q Consensus 164 q~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e---- 239 (471)
...+...++.+-.........++.+.+..........++.+..+++..+.+.|..-.+++...|.++...-..+-+
T Consensus 40 ~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~ 119 (264)
T PF06008_consen 40 LNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQ 119 (264)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC
Confidence 3345566666666666666666666666666666666666666666677777777777777777665555444443
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHH
Q 012087 240 -QSKEIAASQTELQEGQVRIKEK 261 (471)
Q Consensus 240 -~~keIa~sq~el~~~q~~m~~k 261 (471)
....+...+.+...+...|+..
T Consensus 120 ~~~~~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 120 LPSEDLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc
Confidence 3344666666666677777544
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=70.35 E-value=3.3e+02 Score=35.36 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHH
Q 012087 165 YETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVY 238 (471)
Q Consensus 165 ~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~ 238 (471)
+.+|..++.|..-...+.+.+..+...-..+......+...|+..+.....+...-..+..+|+++........
T Consensus 1241 k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~ 1314 (1930)
T KOG0161|consen 1241 KKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEET 1314 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666665555555555666666677777777777777777777777777877765555444
No 60
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.65 E-value=2.5e+02 Score=33.53 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
++....+--+.++++++-..+..++.+ ++++..-|..-|..|
T Consensus 736 ~eel~a~~~e~k~l~~~q~~l~~~L~k-~~~~~es~k~~~~~a 777 (970)
T KOG0946|consen 736 NEELNAALSENKKLENDQELLTKELNK-KNADIESFKATQRSA 777 (970)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhh
Confidence 444444444445555444444444433 444444444444444
No 61
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.58 E-value=1.9e+02 Score=32.28 Aligned_cols=70 Identities=11% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH
Q 012087 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNL 283 (471)
Q Consensus 214 ~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l 283 (471)
..+.+....+...+..|..+...+.++.++-.....++.+.-..++..+.+--..+-.++..|.+..+.+
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~i 173 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENI 173 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHH
Confidence 3344444555555666666666666666666666667777777777777665554444444444444333
No 62
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=68.83 E-value=1.5e+02 Score=35.18 Aligned_cols=180 Identities=18% Similarity=0.174 Sum_probs=92.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHH---HhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 012087 156 YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLL---QSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (471)
Q Consensus 156 ~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Ll---e~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~ 232 (471)
.-+.+..+++++|.++.....++....+.++...+-+..|. +..+...+.-..+..+.+++.++++++.+++..+.-
T Consensus 35 q~~~~~~~~~~~~~a~~~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql~q~~r~i~eq~~~lr~ 114 (835)
T COG3264 35 QEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASDDRQLANLLLQLLQSSRTIREQIAVLRG 114 (835)
T ss_pred HHHhhhhcccccccchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44578899999999999877766655555555554444443 333332222224556677778888888888865444
Q ss_pred hHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 012087 233 HSEVVYNQSKEIAAS----QTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (471)
Q Consensus 233 ~s~~i~e~~keIa~s----q~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~L 308 (471)
....+....+.+... +.+-...=.++|+++-+. ....+.+..+.|+++.++.++...|-..--.|.+....-
T Consensus 115 sL~l~~~~~~q~~~lP~~~~~~e~~~v~~eR~~L~~e----~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~~~l~~ 190 (835)
T COG3264 115 SLLLSRILLQQLGPLPEAGQPQEQFEVTQERDALQAE----KAYINALEGQAEQLTAEVRDILDQILDTRRELLNSLLSQ 190 (835)
T ss_pred hHHHHHHHHHHhcCCCCCCCccchhHHHHHHHHHhhh----HHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 433333222221110 000011112334444333 223334555557777777666666665444444333222
Q ss_pred HHHHhHhhhhhccchH-HHHhHhhchHHHHHhhHHHHHHHHHHHH
Q 012087 309 QRKADNIGSMAGDSLD-KQQQLLHGQSTALESLQLLTKFQSEALA 352 (471)
Q Consensus 309 q~~a~~I~~~~~~Sle-nQ~~LL~gQ~~a~~~l~~l~~~q~~ale 352 (471)
- ...|++ ||+++. .+++.|+++...|+..+.
T Consensus 191 ~---------~~is~~l~~~q~~----~~~d~l~~~~~~~~fW~~ 222 (835)
T COG3264 191 R---------EAISLQLNQQQLS----AASDELRSLLHQQSFWVS 222 (835)
T ss_pred c---------cccCHhhhHHHHH----HHHHHHHHHHHHhhhhHH
Confidence 1 111222 233322 246777777776666444
No 63
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=68.65 E-value=1.3e+02 Score=30.02 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHH-HHHHHHHHHHHH
Q 012087 177 SADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE-IAASQTELQEGQ 255 (471)
Q Consensus 177 sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~ke-Ia~sq~el~~~q 255 (471)
+.+...++++.=. .-|-+...+..+.|-.++...-.+-...+.++..++......+...++.+. +..+...|+..-
T Consensus 14 ~~~~~~dk~EDp~---~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~a 90 (225)
T COG1842 14 NINELLDKAEDPE---KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREA 90 (225)
T ss_pred HHHHHHHhhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444444333 333333334444555555555555555666666666666666655555544 666667777666
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 256 VRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 256 ~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
..=+..+++-.+.+..+|..+...+++++-....++.+|...
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~ 132 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAEL 132 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888889999999999999999998999888873
No 64
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=67.51 E-value=95 Score=27.98 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhHhHHHHHH-HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 012087 208 SIDHRVQNVAQTAKGVRDLMD-ILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVN 281 (471)
Q Consensus 208 si~~q~~~La~tsk~v~~~i~-dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e 281 (471)
.+.....+|....+.+..+|. -|..+...+..+...+..... +...|..++..+..+|+.|..++-
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~--------~l~~v~~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES--------VLQAVRSSVESLQSSYERLRSEVI 96 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666665 234445555554444433222 344555556666666666555443
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.55 E-value=2.2e+02 Score=31.80 Aligned_cols=60 Identities=7% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 012087 223 VRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDE 286 (471)
Q Consensus 223 v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~ 286 (471)
+...++.|......+++....=..+.......+ .++...+.++.+.++.+..+++.+.+.
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~----~~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNS----DTLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444555555555554444222222222222 223333444455555555555555554
No 66
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.13 E-value=3.3e+02 Score=33.70 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHhhHHHHHHhhhhHHHHHHHHHHHHHhHHH
Q 012087 141 HKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADY 180 (471)
Q Consensus 141 f~vY~eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~ 180 (471)
.+.=.+|. ..-+-|+++++..+|..-.++.++++.-...
T Consensus 304 k~~al~fL-~kenel~~~~~~~~q~~~~~~~~ki~~~~~~ 342 (1293)
T KOG0996|consen 304 KNEALEFL-KKENELFRKKNKLCQYILYESRAKIAEMQEE 342 (1293)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 4556789999999999998888888765543
No 67
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=65.84 E-value=13 Score=39.18 Aligned_cols=127 Identities=14% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 012087 181 TEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKE 260 (471)
Q Consensus 181 a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~ 260 (471)
..++|..++.....|-++++.+...++.+....++++.+..++...|+.|...-.++......+......++.-- .
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l----s 108 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL----S 108 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh----h
Confidence 445666666677777777777777777777777777777666666666444433333333333322222211111 1
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccc
Q 012087 261 KLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (471)
Q Consensus 261 kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~S 322 (471)
..+..+..+...+..+.-.+.+||..+.. +..-+.+|+.....+...++..
T Consensus 109 ~h~ssIS~Lqs~v~~lsTdvsNLksdVSt-----------~aL~ItdLe~RV~~LEs~~s~~ 159 (326)
T PF04582_consen 109 DHSSSISDLQSSVSALSTDVSNLKSDVST-----------QALNITDLESRVKALESGSSSP 159 (326)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhhhHHHHHHhhhhhhhhhhhhhhhhhh-----------hcchHhhHHHHHHHHhcCCCCC
Confidence 11222334455555566666666654433 3444445777777776666554
No 68
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.27 E-value=2.7e+02 Score=32.48 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhHhhHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 140 EHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 140 af~vY~eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
.+-.-+....=+-.+|.|+-++...+..+.+.+.+..+......-+......-+.|+.
T Consensus 144 ~~L~~~~~~il~g~i~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~ 201 (806)
T PF05478_consen 144 ILLLLLTLIILFGVICAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLV 201 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445556667788899999999999999988888888888777777777666555554
No 69
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.81 E-value=2.5e+02 Score=31.41 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 012087 396 AQEAFESKQASMFIALDKLF 415 (471)
Q Consensus 396 aqe~f~~kq~~if~~ld~l~ 415 (471)
--++++..|..|...++.|-
T Consensus 391 ~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 391 QLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555443
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.54 E-value=1.9e+02 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=12.7
Q ss_pred hhHhHHHHHHHHhHhhhhhccchH
Q 012087 301 MFSSMEQLQRKADNIGSMAGDSLD 324 (471)
Q Consensus 301 ~s~~m~~Lq~~a~~I~~~~~~Sle 324 (471)
-...+..|....+-+.+..|-+..
T Consensus 269 t~~Ei~~Lk~~~~~Le~l~g~~~~ 292 (312)
T smart00787 269 TFKEIEKLKEQLKLLQSLTGWKIT 292 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCeeE
Confidence 344455555565555555555443
No 71
>PF05802 EspB: Enterobacterial EspB protein
Probab=62.78 E-value=2e+02 Score=30.13 Aligned_cols=71 Identities=15% Similarity=0.359 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHhhhhhhHhHHHHHHHHhHhhhhhc
Q 012087 250 ELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEI-EKEISKAGDAMFSSMEQLQRKADNIGSMAG 320 (471)
Q Consensus 250 el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i-~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~ 320 (471)
-|++|..-+-..|.+++..-+|-+++-.+.+|+|.+.-.++ .+.++.-.|-.++++-+.-.++-|.-+..+
T Consensus 236 slaeg~ktlptt~sesvks~h~~~eqr~ks~e~~q~~nl~~ykq~vrr~qddi~~rlr~~t~~~rdl~~~~n 307 (317)
T PF05802_consen 236 SLAEGTKTLPTTISESVKSNHEINEQRAKSVENFQQGNLELYKQDVRRTQDDITSRLRDMTTAARDLTDLQN 307 (317)
T ss_pred hhhcccccCCchHHHhhcccchhhHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777788888877888899999999998855554 456777778888888888888877665543
No 72
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.50 E-value=2.6e+02 Score=31.17 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHh
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLL 330 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL 330 (471)
|-.+.|-+.-+-.+....+++.+.+..-.++-.++++||++.-||- -=|++|++|-
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm----f~le~qqklk 458 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM----FFLEAQQKLK 458 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----eehhhhhhhh
Confidence 3344444444444455556666666666778888899999887652 3345665553
No 73
>PLN03223 Polycystin cation channel protein; Provisional
Probab=61.22 E-value=15 Score=45.21 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=35.7
Q ss_pred hhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHH
Q 012087 299 DAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSE 349 (471)
Q Consensus 299 ~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~ 349 (471)
+.+.+.-+-|+...++......|=+|+|.+|.+||++.++|=.-|.+.|++
T Consensus 1567 ~~~~e~~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~k 1617 (1634)
T PLN03223 1567 EDDDEDGDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSR 1617 (1634)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHH
Confidence 455555556666666666666777799999999999998865555554444
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.64 E-value=2e+02 Score=29.26 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=13.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+.|+.|..+++.+++....++.+|..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444444433
No 75
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.76 E-value=3.7e+02 Score=32.14 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=34.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHH---HH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 012087 365 GHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQAS---MF-----IALDKLFALHNAMLLESRMIKAF 431 (471)
Q Consensus 365 ~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~---if-----~~ld~l~~l~n~~l~E~~~~k~f 431 (471)
-+.+|.++-+.+++++-....- ++...-+++++.-+..+|. -. +-..|+--..|.|-.++--++|+
T Consensus 808 l~~~q~e~~~~keq~~t~~~~t-sa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl 881 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERT-SAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSL 881 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhH
Confidence 4567788888888888776643 2222333433333322222 11 22334445566666655555554
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=59.68 E-value=1.9e+02 Score=28.67 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 012087 183 HKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (471)
Q Consensus 183 e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~ 232 (471)
..++.+.+...+..+...+.+.-.+.+..+.+.+...-+.+...++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444445555555565555555555544433
No 77
>PLN03223 Polycystin cation channel protein; Provisional
Probab=59.39 E-value=1.5e+02 Score=37.11 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=55.8
Q ss_pred hhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012087 203 HDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQ----------SKEIAASQTELQEGQVRIKEKLDEGMATLIDA 272 (471)
Q Consensus 203 ~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~----------~keIa~sq~el~~~q~~m~~kid~g~a~~~e~ 272 (471)
.++|+++-.|.--|..++-.+..+|+-|...+...-.. ..-|.++-.+...||..+..|+|+=.+....+
T Consensus 777 ~~~l~~~~~~v~~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~~~~~~~il~kq~~a 856 (1634)
T PLN03223 777 AATLTNILTQVGTLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNSLETLINAGFTDIKAGQAALEAKLDEILGKQQQA 856 (1634)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHhchhHHHhHHHHHHhHHHHHHHHHHHH
Confidence 46777777777777777777777776555444322211 12277777888888887777776653322222
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 012087 273 YSNLGKEVNNLRDEAIEIEKEISKAGDAMFSS 304 (471)
Q Consensus 273 y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~ 304 (471)
+- -.+++..|.++++.++|.=..-
T Consensus 857 l~--------~~~~~~~~~~~~~~la~~~~~~ 880 (1634)
T PLN03223 857 LA--------AAQESLAIQQRTNGLAERQAAA 880 (1634)
T ss_pred HH--------HHHHHHHHHHHHHHHHHhhHHH
Confidence 11 1246667777777755443333
No 78
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=57.81 E-value=2.1e+02 Score=28.55 Aligned_cols=40 Identities=15% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 012087 212 RVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTEL 251 (471)
Q Consensus 212 q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el 251 (471)
+...+.+..+++...++.+......+.+...++......+
T Consensus 186 ~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l 225 (291)
T TIGR00996 186 RDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQL 225 (291)
T ss_pred cchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333333333
No 79
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=57.78 E-value=2e+02 Score=28.38 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHhHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLM 227 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i 227 (471)
.....+....+.+...|
T Consensus 134 eR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 134 ERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHH
Confidence 33333333333333333
No 80
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=57.72 E-value=1.1e+02 Score=25.39 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 012087 351 LAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (471)
Q Consensus 351 leesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~ 401 (471)
+++-.+.|....+.-..+=+.+++|.|.|....+ .|..+...=+.|+
T Consensus 5 l~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~----kt~~L~~~a~~F~ 51 (89)
T PF00957_consen 5 LEQIQEQVEEVKNIMRENIDKLLERGEKLEELED----KTEELSDNAKQFK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH----HHHHHHHHhHHHH
Confidence 4444555566666666666778888888776655 4555555333343
No 81
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=57.61 E-value=1.1e+02 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.311 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhh-----hhhhHhHHHHHHHHhHhhhhhccchHHHHhH
Q 012087 280 VNNLRDEAIEIEKEISKAG-----DAMFSSMEQLQRKADNIGSMAGDSLDKQQQL 329 (471)
Q Consensus 280 ~e~l~~~~~~i~~~i~~vg-----~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~L 329 (471)
+-++.+.+..+++.+..+| ..+..++..+...+.++...++..|.+-..+
T Consensus 5 l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666666 5567777778888888887777777775554
No 82
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=56.21 E-value=2.1e+02 Score=28.25 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 370 EELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRM 427 (471)
Q Consensus 370 eell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~ld~l~~l~n~~l~E~~~ 427 (471)
.|--.|...+..+.+.|-+..+..-...|.|++ .++|-|-.+-|++-+|+-.
T Consensus 168 ~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~------~v~~Ei~~lk~~l~~e~~~ 219 (247)
T PF06705_consen 168 KEKNTRESKLSELRSELEEVKRRREKGDEQFQN------FVLEEIAALKNALALESQE 219 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554333333333444433 2566677777777776643
No 83
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.67 E-value=3e+02 Score=29.88 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHH
Q 012087 416 ALHNAMLLESRM---IKAFFIYSLS 437 (471)
Q Consensus 416 ~l~n~~l~E~~~---~k~f~~y~~~ 437 (471)
.++.++-+|.+. +++|+++|+.
T Consensus 321 ~~Qq~~q~e~~~n~~~r~~l~k~in 345 (395)
T PF10267_consen 321 QQQQVVQLEGTENSRARALLGKLIN 345 (395)
T ss_pred HhhhhhhhcccccccHHHHHHHHHH
Confidence 566788888777 7888888744
No 84
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.15 E-value=2.3e+02 Score=28.35 Aligned_cols=54 Identities=22% Similarity=0.393 Sum_probs=35.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhh----hhhhHhHHHHHHHHhHhhhhhccch
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAG----DAMFSSMEQLQRKADNIGSMAGDSL 323 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg----~~~s~~m~~Lq~~a~~I~~~~~~Sl 323 (471)
.+++++.-..|..+++-..+...+-++|- +.|--.|.++=+.+++|..+.|++.
T Consensus 96 ~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y 153 (218)
T KOG1655|consen 96 AESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNY 153 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444445555555555555555555554 5566678888889999988888875
No 85
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=54.55 E-value=3.5e+02 Score=30.20 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhc
Q 012087 274 SNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAG 320 (471)
Q Consensus 274 ~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~ 320 (471)
.=+.+.++.++..+.+++.+=.+-.-+|.+.+..|+.....|..-|.
T Consensus 143 ~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~ 189 (475)
T PRK10361 143 SPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAI 189 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444445666666666666666665553
No 86
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=54.35 E-value=15 Score=31.20 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcccccccccchhHHHHHHHHHH
Q 012087 433 IYSLSIFIIYMLTSTKQTYTVRPRLYIGKHMFLYL 467 (471)
Q Consensus 433 ~y~~~~~~iym~ts~k~T~~~r~~ly~gl~~~~~~ 467 (471)
+.+...|+||=+||+|.+.++=--|.++++..+|+
T Consensus 28 l~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~fl 62 (77)
T PF05251_consen 28 LFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFL 62 (77)
T ss_pred HHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHH
Confidence 45667899999999999999777777777776654
No 87
>PF13166 AAA_13: AAA domain
Probab=54.34 E-value=3.6e+02 Score=30.31 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=16.8
Q ss_pred Hhhhc-CChHHHHHHHHHHHhH
Q 012087 131 NCLKK-IDDEEHKIYLAFLLET 151 (471)
Q Consensus 131 ~Ct~~-Mdd~af~vY~eF~~ht 151 (471)
=|.++ +++..+..|..||...
T Consensus 260 fC~q~~l~~~~~~~l~~~f~~~ 281 (712)
T PF13166_consen 260 FCQQEPLSEERKERLEKYFDEE 281 (712)
T ss_pred CCCCcCCcHHHHHHHHHHHHHH
Confidence 56786 8999999998887764
No 88
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=52.84 E-value=7.6 Score=32.47 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccccccccchhHHHHHHHHHH
Q 012087 434 YSLSIFIIYMLTSTKQTYTVRPRLYIGKHMFLYL 467 (471)
Q Consensus 434 y~~~~~~iym~ts~k~T~~~r~~ly~gl~~~~~~ 467 (471)
++..-|++|-+||||-+..+-.-|+|.+|..+|+
T Consensus 31 fftAwFf~~~VtStKy~r~l~KELlIsl~aSvFl 64 (79)
T KOG4452|consen 31 FFTAWFFMIQVTSTKYNRNLLKELLISLTASVFL 64 (79)
T ss_pred HHHHHHHheeEecchhhHHHHHHHHHHHHHHHHH
Confidence 4556678899999999988777889999888875
No 89
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=52.37 E-value=2.9e+02 Score=28.71 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHh
Q 012087 139 EEHKIYLAFLLETN 152 (471)
Q Consensus 139 ~af~vY~eF~~ht~ 152 (471)
..-..|..|.....
T Consensus 23 ~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 23 KERDTYQEFLKKLE 36 (314)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 45677888877766
No 90
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=52.37 E-value=1.3e+02 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=10.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
+.-+.+.++++.+..++.++..+...
T Consensus 33 ~ti~~l~~~~~~i~~e~~~ll~~~n~ 58 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEINDLLHNTNE 58 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33333333334444433333333333
No 91
>PHA03386 P10 fibrous body protein; Provisional
Probab=52.13 E-value=45 Score=29.38 Aligned_cols=50 Identities=20% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhH-HHHHHH
Q 012087 290 IEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ-LLTKFQ 347 (471)
Q Consensus 290 i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~-~l~~~q 347 (471)
|...|+..-.++..|...||.++++...+ + +-||||+..+..|+ .+.++|
T Consensus 6 ILl~Ir~dIkavd~KVdaLQ~qV~dv~~n------~--~~LDa~~~qL~~l~tkV~~Iq 56 (94)
T PHA03386 6 VLTQILDAVQEVDTKVDALQTQLNGLEED------S--QPLDGLPAQLTELDTKVSDIQ 56 (94)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhc------c--hhhhhHHHHHHHHHHHHHHHH
Confidence 44455555566778888899999998876 2 22888888777666 454443
No 92
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=51.92 E-value=2e+02 Score=26.76 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHH
Q 012087 202 IHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSN-LGKEV 280 (471)
Q Consensus 202 ~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~-lg~~~ 280 (471)
+++.|. .+...+......++..++++.+.+..+++..+.|.++... +.+-...-..+..+|.. |-+-.
T Consensus 23 i~~~L~---k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~--------~q~~~~~n~~i~~~~s~~l~~~~ 91 (146)
T PF08702_consen 23 IQDFLD---KYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRP--------RQKQAKPNDNIYNQYSKSLRKMI 91 (146)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--------cccccCCcccHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHHHHHHHHHhh---hhhhHhHHHHHHHHh
Q 012087 281 -NNLRDEAIEIEKEISKAG---DAMFSSMEQLQRKAD 313 (471)
Q Consensus 281 -e~l~~~~~~i~~~i~~vg---~~~s~~m~~Lq~~a~ 313 (471)
..+..-.......|+.+. ++...||+.|....+
T Consensus 92 ~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 92 IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDID 128 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
No 93
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.85 E-value=2.6e+02 Score=28.04 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=20.6
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHH
Q 012087 259 KEKLDEGMATLIDAYSNLGKEVNNLRDE 286 (471)
Q Consensus 259 ~~kid~g~a~~~e~y~~lg~~~e~l~~~ 286 (471)
+++..+.+.++.+.|..|-.+++.++.+
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677788888888888888775
No 94
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=51.03 E-value=1.2e+02 Score=27.11 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 269 LIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 269 ~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
.-+....|.+.+++.-+...++..|++++|+++-...+.|++--
T Consensus 51 qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 51 QGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666777778888899988877777776543
No 95
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=49.66 E-value=3.1e+02 Score=28.20 Aligned_cols=46 Identities=9% Similarity=0.132 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH
Q 012087 183 HKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 183 e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~ 228 (471)
+++-.+..--.++-..++++++.|+.|..||+.|..-...++..+.
T Consensus 113 ekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 113 EKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555556667777777777777777776666666654
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.48 E-value=4e+02 Score=29.36 Aligned_cols=60 Identities=13% Similarity=0.261 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 236 VVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 236 ~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
+|-+..++|...+.+++..+.++ ..++..++.+.++........+++...-.++..+|.+
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~l-k~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQL-KSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 33344455555555555554444 3445556666666666666666666555555555555
No 97
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=49.01 E-value=2.8e+02 Score=27.44 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHH
Q 012087 162 GFQYETERLVNELKKSADYTEHKLEI 187 (471)
Q Consensus 162 ~Fq~~TE~tVnkL~~sS~~a~e~Le~ 187 (471)
.-++.++.+++-|..++......++.
T Consensus 41 dLrEks~~L~~lL~~ns~~L~~~~~~ 66 (190)
T PF09074_consen 41 DLREKSSKLINLLNQNSKELCSVQEQ 66 (190)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554433333
No 98
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=48.63 E-value=4.1e+02 Score=29.28 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=82.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 012087 153 SICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (471)
Q Consensus 153 sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~ 232 (471)
-+=||+++..|-.. ++==.|..-+.+..+..+..+++.++ .++-++|...+- -
T Consensus 110 I~dyyirqrefs~l--rLS~qls~va~El~~aa~aa~e~~~e----------------------~~W~~~V~a~Lk---y 162 (440)
T PF03882_consen 110 ISDYYIRQREFSTL--RLSIQLSIVAQELQRAADAAEEGGDE----------------------SHWRRNVFAPLK---Y 162 (440)
T ss_dssp HHHHHHS-----HH--HHHHHHHHHHHHHHHHHHHHHT--SH----------------------HHHHHHTHHHHH---H
T ss_pred hhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCCh----------------------HHHHHhhhhccc---c
Confidence 45688888888655 33333333333333333333332111 345555555551 1
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 233 HSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 233 ~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
.-++|+ ..|--+|+-+-+.|..+|+.|.+ .++..|+.--..-++|-+++..-.+| ||++-
T Consensus 163 SVaeif---d~Idl~QR~MDeqQ~~vk~eIA~---LL~qdW~~AI~~Ce~LL~EtsgtLRE--------------LqdtL 222 (440)
T PF03882_consen 163 SVAEIF---DSIDLNQRAMDEQQQSVKEEIAA---LLNQDWRAAIQSCEQLLDETSGTLRE--------------LQDTL 222 (440)
T ss_dssp THHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGGHHHHHHHHHHHHHHHHH--------------HHHHH
T ss_pred cHHHHH---hhhhHHHHHHHHHHHHHHHHHHH---HHchhHHHHHHHHHHHHHHHHhhHHH--------------HHHHH
Confidence 223333 34555666666677777776643 35556665555555555555433333 44344
Q ss_pred hHhhhhhccchHHHHhHhhchHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 012087 313 DNIGSMAGDSLDKQQQLLHGQSTALE--SLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHD 384 (471)
Q Consensus 313 ~~I~~~~~~SlenQ~~LL~gQ~~a~~--~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~ 384 (471)
+--|+ +-|.+||.=|..++. ++..+. +++-.--.-+-++..+|+.-...... =-+.+|+
T Consensus 223 ~aagd------~lqa~Ll~IQe~~~~~~~l~~v~----~l~~~Lq~kLDrI~sWGqq~idlWig---YdrhVHk 283 (440)
T PF03882_consen 223 EAAGD------KLQAQLLRIQEAVMGRDELEFVD----NLIFDLQMKLDRIISWGQQAIDLWIG---YDRHVHK 283 (440)
T ss_dssp HHHHH------HHHHHHHHHHHHHHCSSS-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHhHH------HHHHHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33333 336666666666532 222222 23334444566678887766555443 3567777
No 99
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.27 E-value=3.1e+02 Score=27.85 Aligned_cols=50 Identities=20% Similarity=0.328 Sum_probs=38.6
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 259 KEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 259 ~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
.+++.+-...+.+.+..+-.+++.+++....++.+|.. +..++.+++.+.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~----~r~r~~~~e~kl 82 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE----IRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444555677888999999999999999999999988 666777666665
No 100
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.08 E-value=6.4e+02 Score=31.40 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=8.4
Q ss_pred CCCchHHHHHHHHhccchhh
Q 012087 74 GSNACWQNAYRHLFAGCSEI 93 (471)
Q Consensus 74 ~~~~CW~~Al~~L~~~C~~L 93 (471)
....|+..|+.+-- =|+++
T Consensus 706 ~~r~aFYfaLrdtL-V~d~L 724 (1293)
T KOG0996|consen 706 KFRPAFYFALRDTL-VADNL 724 (1293)
T ss_pred HHHHHHHHHHhhhh-hhcCH
Confidence 34455555544322 24544
No 101
>KOG2701 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.44 E-value=4.9e+02 Score=29.91 Aligned_cols=78 Identities=23% Similarity=0.218 Sum_probs=56.8
Q ss_pred hhhhHhHHHHHHHHhHhhhhhccchHHH----HhHhhchHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 012087 299 DAMFSSMEQLQRKADNIGSMAGDSLDKQ----QQLLHGQSTAL------ESLQLLTKFQSEALAESRNTLQELAEYGHKQ 368 (471)
Q Consensus 299 ~~~s~~m~~Lq~~a~~I~~~~~~SlenQ----~~LL~gQ~~a~------~~l~~l~~~q~~aleesr~tiq~~~~~~~~~ 368 (471)
..|-.++.+|+...+|-.+-.+++.++| ..-|+|+-++. +.+.+|.--+++|++|.=.+=++-+.-...-
T Consensus 380 ~rc~~~~~nl~~qi~Dl~~~~~~~~~ke~n~re~~l~~~ek~~~~y~~~~~l~si~~~l~r~~reii~~~rKr~~d~vpe 459 (608)
T KOG2701|consen 380 VRCRSDLANLQDQIRDLKSPKAKRHDKETNIREEALDGHEKTLNSYGKLRLLESIRLRLARALREIISLRRKRAIDDVPE 459 (608)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhhHHHHHhcchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3677789999999999999999999999 78999999985 7777777777777777655444433333333
Q ss_pred HHHHHHHH
Q 012087 369 QEELLKRQ 376 (471)
Q Consensus 369 qeell~~Q 376 (471)
+-||++.|
T Consensus 460 ~sEl~qy~ 467 (608)
T KOG2701|consen 460 RSELLQYQ 467 (608)
T ss_pred cchhhHHH
Confidence 34444333
No 102
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=47.22 E-value=3.2e+02 Score=27.65 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 171 VNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 171 VnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
++.|++.-.--.++|..+-..-.+++.
T Consensus 19 L~ala~Al~GrG~~lg~~l~~l~~~l~ 45 (267)
T PF11887_consen 19 LSALATALDGRGEQLGETLDDLNTLLA 45 (267)
T ss_pred HHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 333333333333344444444444443
No 103
>PF14992 TMCO5: TMCO5 family
Probab=46.80 E-value=3.6e+02 Score=28.13 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (471)
Q Consensus 350 aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~ 401 (471)
.|++|.+.+|.+.+...+|=+++.+..+.++++|.-.-.-++.|.+-||.++
T Consensus 110 ~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~ 161 (280)
T PF14992_consen 110 SLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLR 161 (280)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888887755444555555555553
No 104
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=46.51 E-value=3.8e+02 Score=28.42 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=39.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 236 VVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 236 ~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.++++..+-+..-.++...|.+|...++.--..+..--+++.+.++.+..+...|+.||.++
T Consensus 326 ~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 326 SLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444455555566666666665555566666667777777888888888888763
No 105
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=46.27 E-value=2.3e+02 Score=27.86 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=18.8
Q ss_pred HHHh-hHHHHHHHHHHHHHHHHHHHHhh
Q 012087 272 AYSN-LGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 272 ~y~~-lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
.|+. .|+-+.|..+-..+|+.++-.+-
T Consensus 128 ~FQDLTGQ~IkKVv~~l~~vE~~L~~ll 155 (214)
T PF04344_consen 128 DFQDLTGQRIKKVVNLLQEVEERLVQLL 155 (214)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 67777888777777777776643
No 106
>COG1511 Predicted membrane protein [Function unknown]
Probab=45.52 E-value=5.6e+02 Score=29.96 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHhhh-hhhHhHHHHHHHHhHhhh---
Q 012087 244 IAASQTELQEGQVRIKEKLD-EGMATLIDAYS-NLGKEVNNLRDEAIEIEKEISKAGD-AMFSSMEQLQRKADNIGS--- 317 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid-~g~a~~~e~y~-~lg~~~e~l~~~~~~i~~~i~~vg~-~~s~~m~~Lq~~a~~I~~--- 317 (471)
|+++..++..+=.+....++ .|+..+..++. .+-.+...+.+...++-...+.+.. .+.+.++++.+.+++..+
T Consensus 421 i~~~~~~l~~~~~~~~~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 500 (780)
T COG1511 421 IAASIAQLLPGASEVLKTLKSKGLDKLLNQLNGALAKGSNALVQGLSDANDSFRSITSAQLKAGLNTLADGSNDLSSLGP 500 (780)
T ss_pred HHHHHHHhhhhHHHHHHHHhhcchhhhhhhhHHHHhcchhhhhhccchhhhhhcccchHHHHHHHHHHHhhHhhhhcccc
Confidence 44444444444444444444 44444444444 3444444444433333333333222 277788999999999888
Q ss_pred hhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 318 MAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAE 363 (471)
Q Consensus 318 ~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~ 363 (471)
+.+..-+.-++|.+|=..+-.|-..|.+-+.+...++++.--.+++
T Consensus 501 gl~~l~~~s~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 546 (780)
T COG1511 501 GLGQLADGSKLLADGLSELNTGSAQLRDGLGELSDGLTELADSLQD 546 (780)
T ss_pred chhhhhhhhhhhhchhhHHHHHHHHHhhhHHHHHHhHhHHHHHHHh
Confidence 6667777777777777777777777777777666666655544443
No 107
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=44.36 E-value=19 Score=34.12 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=13.2
Q ss_pred HHHHhhccccCcccccccCC
Q 012087 10 LILFLVLPGCQSWGWFSSGS 29 (471)
Q Consensus 10 lil~~~~~~~~s~~WFsS~~ 29 (471)
+|.++..+.|..+.||++++
T Consensus 25 ~ivl~~~a~~~~~~~~~~~~ 44 (159)
T COG1580 25 LIVLLALAGAGYFFWFGSKS 44 (159)
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 33344677777788987753
No 108
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=44.28 E-value=1.5e+02 Score=22.93 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+.|..+...++++.+.-.++...+..
T Consensus 50 ~~~~~~~~~~~~~~~~~L~~~~~~l~~ 76 (86)
T PF06013_consen 50 QDKFEEWNQAFRQLNEALEELSQALRQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333333333
No 109
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.52 E-value=7.6e+02 Score=30.93 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAM 421 (471)
Q Consensus 350 aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~ld~l~~l~n~~ 421 (471)
+..+.++.|..|.+--.....++...|+ ++.....-+.++..- +.--.++-|....+.-+.+.-.=|+..
T Consensus 624 ~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~~~~ek~-~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 624 IIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERISDSEKE-ALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666676666665556666666665 333332222222111 112235566677777777777766655
No 110
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=43.21 E-value=3.7e+02 Score=27.29 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhh
Q 012087 172 NELKKSADYTEHKLEIIEEKSDTLLQSSNQIH 203 (471)
Q Consensus 172 nkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~ 203 (471)
++|.....-....|..+.+.++......+.+-
T Consensus 46 ~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ 77 (230)
T PF03904_consen 46 QELKRQNKLIIKYLSEIEEKQDIREKNLKEIK 77 (230)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556555555555444433
No 111
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=43.09 E-value=2.5e+02 Score=25.27 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 261 KLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 261 kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.++.-++.+..+.++|-.+.++|+.+..+=..+|.+
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~ 104 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQK 104 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344444444444444444444444443333333
No 112
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=42.18 E-value=7.5e+02 Score=30.47 Aligned_cols=48 Identities=13% Similarity=-0.074 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 392 SILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIF 439 (471)
Q Consensus 392 ~~l~aqe~f~~kq~~if~~ld~l~~l~n~~l~E~~~~k~f~~y~~~~~ 439 (471)
+....++++.+.=..+.+.+++...-|+..+-|.-+.|+-+-|+=.-+
T Consensus 840 ~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 840 QLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344578889999999999999999999999999999999998887543
No 113
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=42.05 E-value=2.7e+02 Score=25.25 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=14.6
Q ss_pred HhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 012087 159 QAHGFQYETERLVNELKKSADYTEHKL 185 (471)
Q Consensus 159 q~e~Fq~~TE~tVnkL~~sS~~a~e~L 185 (471)
++..=++.||+.......++..+.+.|
T Consensus 8 ~q~~~re~~e~~r~ea~~s~~~l~~~l 34 (121)
T PF06320_consen 8 RQAELREEQERARKEAIASAQALTNAL 34 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666665555444443
No 114
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=40.67 E-value=4.6e+02 Score=27.57 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 012087 411 LDKLFALHNAMLL 423 (471)
Q Consensus 411 ld~l~~l~n~~l~ 423 (471)
+|+++.|-|=++.
T Consensus 199 f~~l~~l~n~~~~ 211 (301)
T PF06120_consen 199 FNRLMGLGNQLLA 211 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 6777666554443
No 115
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=40.39 E-value=4.1e+02 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHhHhHHHHHHHHHHhHHHHHHhHHHH
Q 012087 215 NVAQTAKGVRDLMDILSRHSEVVYNQSKEI 244 (471)
Q Consensus 215 ~La~tsk~v~~~i~dl~~~s~~i~e~~keI 244 (471)
-++.++.++...++++..-+.+|-++..+|
T Consensus 67 ~~a~aapdL~~~l~~~~~~s~tL~~~~~~L 96 (267)
T PF11887_consen 67 TYADAAPDLLDALDNLTTTSRTLVDQRQQL 96 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334444444444444444444444333333
No 116
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=40.31 E-value=3.9e+02 Score=26.69 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHH
Q 012087 163 FQYETERLVNELKKSADYTEHK 184 (471)
Q Consensus 163 Fq~~TE~tVnkL~~sS~~a~e~ 184 (471)
..+.|+.+++.++.++.=..+.
T Consensus 3 ~~~lt~~~~~~~~~~~~P~~~~ 24 (223)
T cd07605 3 LNRLTENIYKNIKEQFNPVLRN 24 (223)
T ss_pred HHHHHHHHHHHHHhccChhHHH
Confidence 3456677777777744443333
No 117
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=40.09 E-value=4e+02 Score=26.70 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=17.0
Q ss_pred HHh-hHHHHHHHHHHHHHHHHHHHH
Q 012087 273 YSN-LGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 273 y~~-lg~~~e~l~~~~~~i~~~i~~ 296 (471)
|+. .|+-+.|..+-..+||.++-.
T Consensus 141 FQDLTGQvI~kVi~~v~~vE~~L~~ 165 (214)
T PRK11166 141 FQDLTGQVIKRMMDVIQEIERQLLM 165 (214)
T ss_pred chHhHhHHHHHHHHHHHHHHHHHHH
Confidence 555 577777777777777777755
No 118
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.95 E-value=7.8e+02 Score=30.06 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH---hHhhHHHHHHhhhhHHHHHHHHHHHHHh
Q 012087 139 EEHKIYLAFLL---ETNSICYQLQAHGFQYETERLVNELKKS 177 (471)
Q Consensus 139 ~af~vY~eF~~---ht~sIC~~Lq~e~Fq~~TE~tVnkL~~s 177 (471)
....-|..... .....++..+-..++.+-+.+.+.+...
T Consensus 210 ~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 251 (1163)
T COG1196 210 EKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRL 251 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 4444555555555544444444444433
No 119
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=39.70 E-value=3.5e+02 Score=26.89 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=20.0
Q ss_pred HHHHH-HHHHHHhhhHHHHHHHHHHHHHHH
Q 012087 391 RSILA-AQEAFESKQASMFIALDKLFALHN 419 (471)
Q Consensus 391 ~~~l~-aqe~f~~kq~~if~~ld~l~~l~n 419 (471)
+.+|+ +.+..+...+.|=.+-+||-...+
T Consensus 194 ~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~ 223 (251)
T PF09753_consen 194 NKVLDRTEEGLDRNLSSLKRESKRLKEHSS 223 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565 777777777777778888766543
No 120
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=39.67 E-value=3.4e+02 Score=25.82 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=44.9
Q ss_pred hhhHhHHHHHHHHhHhhhhhccchHH---HHh----HhhchHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHhH
Q 012087 300 AMFSSMEQLQRKADNIGSMAGDSLDK---QQQ----LLHGQSTALESLQLLTKFQ------SEALAESRNTLQELAEYGH 366 (471)
Q Consensus 300 ~~s~~m~~Lq~~a~~I~~~~~~Slen---Q~~----LL~gQ~~a~~~l~~l~~~q------~~aleesr~tiq~~~~~~~ 366 (471)
.+..++..++..+..|...+.+-=+. -.+ -|++=.++++.+..|++-. .++++|++++|..+.+-..
T Consensus 98 ~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~ 177 (199)
T PF10112_consen 98 EMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQPVKSEEIKQSLEEIEETLDTLNQAFE 177 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777776655432221 111 2444455556665555422 2378888999888888777
Q ss_pred HhHHHHHH
Q 012087 367 KQQEELLK 374 (471)
Q Consensus 367 ~~qeell~ 374 (471)
++...|++
T Consensus 178 ~~~~~l~~ 185 (199)
T PF10112_consen 178 KDLDKLLE 185 (199)
T ss_pred HHHHHHHH
Confidence 76666654
No 121
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.49 E-value=6.5e+02 Score=29.00 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 012087 79 WQNAYRHL 86 (471)
Q Consensus 79 W~~Al~~L 86 (471)
...|+++|
T Consensus 100 ~~~VV~~L 107 (726)
T PRK09841 100 LGKTIAEL 107 (726)
T ss_pred HHHHHHHh
Confidence 33444443
No 122
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=39.10 E-value=8.2e+02 Score=30.05 Aligned_cols=88 Identities=26% Similarity=0.374 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhhhhhHhHHHHHH----------
Q 012087 242 KEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK-AGDAMFSSMEQLQR---------- 310 (471)
Q Consensus 242 keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~-vg~~~s~~m~~Lq~---------- 310 (471)
++.+..+..+.+.|+++...+..- +.++....-+.+ |..||.+ ||-.++.-|.-+++
T Consensus 939 e~la~~e~~~r~~~~qi~q~ltq~----------~s~~~~~~~e~t--i~~El~~tv~P~v~rs~~p~~~q~~~s~itkl 1006 (1283)
T KOG1916|consen 939 EELAKNEKALRDLQQQITQQLTQF----------LSKELNAMFEKT--IKKELAKTVGPCVARSVEPVIEQTVSSAITKL 1006 (1283)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHH--HHHHHHhhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 446777777777777776554433 222222222221 3355555 55444444444433
Q ss_pred -HHhHhhhhhccchHHHHhHhhchHHH-HHhhH
Q 012087 311 -KADNIGSMAGDSLDKQQQLLHGQSTA-LESLQ 341 (471)
Q Consensus 311 -~a~~I~~~~~~SlenQ~~LL~gQ~~a-~~~l~ 341 (471)
..|-|++..---|.|=++|+|-=.++ ..+++
T Consensus 1007 ~~~eg~~kenI~ql~KSknl~dtvar~i~~~~Q 1039 (1283)
T KOG1916|consen 1007 FQREGIGKENINQLLKSKNLEDTVARQIQAQFQ 1039 (1283)
T ss_pred HHhhchHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 23445554444566666677755544 33444
No 123
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.08 E-value=1.7e+02 Score=26.86 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=34.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012087 212 RVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEG 265 (471)
Q Consensus 212 q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g 265 (471)
-...+..++|.+...|+.|=..-.+--++.+.|...+.++...-.++.++++++
T Consensus 74 lA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~ 127 (144)
T PF11221_consen 74 LATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEA 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888876554333444666677777777766666666666655
No 124
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.98 E-value=4.8e+02 Score=27.33 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=7.0
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 012087 169 RLVNELKKSADYTEHKLEI 187 (471)
Q Consensus 169 ~tVnkL~~sS~~a~e~Le~ 187 (471)
.+++.+..........|..
T Consensus 162 ~~l~~~~~~~~g~~~~l~~ 180 (359)
T COG1463 162 AILNEAAAALAGTGPQLNA 180 (359)
T ss_pred HHHHHHHHHhcccchHHHH
Confidence 3333333333333333333
No 125
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=38.82 E-value=3.3e+02 Score=25.47 Aligned_cols=98 Identities=12% Similarity=0.226 Sum_probs=64.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHH
Q 012087 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAAS 247 (471)
Q Consensus 168 E~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~s 247 (471)
....+.+......+.+.|+.+.+.-..|.+..+.+|+.=+.+...+.+|.+.++.+..-+. ....+-.-++.++..
T Consensus 13 ~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~----yF~~Ld~itr~Ln~p 88 (157)
T PF04136_consen 13 REECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQ----YFEELDPITRRLNSP 88 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHhhHHHHHHHHcCC
Confidence 3355667777888888888888888888888888888777777888888877777766662 222222222222111
Q ss_pred H-HHHHHHHHHHHHHHHHhHHHH
Q 012087 248 Q-TELQEGQVRIKEKLDEGMATL 269 (471)
Q Consensus 248 q-~el~~~q~~m~~kid~g~a~~ 269 (471)
- .-.++....|..+||+.++=+
T Consensus 89 ~~sV~~~~F~~~L~~LD~cl~Fl 111 (157)
T PF04136_consen 89 GSSVNSDSFKPMLSRLDECLEFL 111 (157)
T ss_pred CCcccchHHHHHHHHHHHHHHHH
Confidence 0 112566778888888888754
No 126
>PRK02224 chromosome segregation protein; Provisional
Probab=38.40 E-value=6.9e+02 Score=28.98 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=5.1
Q ss_pred hhccchhhcCC
Q 012087 107 LSDCFQKDSGR 117 (471)
Q Consensus 107 LtNCfle~SGR 117 (471)
|.||..-.-|.
T Consensus 129 f~~~~~i~Qge 139 (880)
T PRK02224 129 FVNCAYVRQGE 139 (880)
T ss_pred hcceeEeeccC
Confidence 45554444444
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.30 E-value=3.9e+02 Score=26.13 Aligned_cols=147 Identities=12% Similarity=0.318 Sum_probs=0.0
Q ss_pred cchhhcCCCCCCCCCCcchHhHhhhcCChHHHHHHHHHHHhHhhHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012087 110 CFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIE 189 (471)
Q Consensus 110 Cfle~SGR~~fp~C~~~~si~~Ct~~Mdd~af~vY~eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~ 189 (471)
|+ ..+++| .|. .|+++ +-..-...+..+.
T Consensus 5 C~---~~~~~~-~C~------~C~~~-----------------------------------------~L~~~~~~l~~~~ 33 (302)
T PF10186_consen 5 CH---NSRRRF-YCA------NCVNN-----------------------------------------RLLELRSELQQLK 33 (302)
T ss_pred CC---CCCCCe-ECH------HHHHH-----------------------------------------HHHHHHHHHHHHH
Q ss_pred HhhHHHHHhhHhhhh-----hhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 190 EKSDTLLQSSNQIHD-----SLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDE 264 (471)
Q Consensus 190 e~q~~Lle~~~~~~d-----sL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~ 264 (471)
...+.+....++.-. ....+......+.+....+...-..+.+..+.|.+.-+.+......+..-...+. +-..
T Consensus 34 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~-~~~~ 112 (302)
T PF10186_consen 34 EENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS-ASQD 112 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 012087 265 GMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (471)
Q Consensus 265 g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~L 308 (471)
......+....+.++.+..+.....++.++...-..+...+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 113 LVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 128
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=38.26 E-value=6.4e+02 Score=28.60 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=24.4
Q ss_pred HHHHHhhHHHHHHHHHHHHH-HHHHHHHhhhhhhHhHHHHHHHHhHhh
Q 012087 270 IDAYSNLGKEVNNLRDEAIE-IEKEISKAGDAMFSSMEQLQRKADNIG 316 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~-i~~~i~~vg~~~s~~m~~Lq~~a~~I~ 316 (471)
.+....+.+++..+-+.+.+ +.+..+..-+.+.+.++.+...+..+.
T Consensus 295 ~e~~~~le~~~k~Lve~s~d~L~~~~~~~~elvns~~Qkl~~~~~~lk 342 (544)
T PF04163_consen 295 DESSSQLEQGMKNLVEMSNDSLSESMESNNELVNSGFQKLEDLTSQLK 342 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555 555555555555555555555544443
No 129
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=38.02 E-value=5.7e+02 Score=27.90 Aligned_cols=88 Identities=26% Similarity=0.233 Sum_probs=57.9
Q ss_pred chHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q 012087 322 SLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE 401 (471)
Q Consensus 322 SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~ 401 (471)
-|.+|+.-+++|.-..+-=|.|=.--++.|.+...++++.++-+-=-=|-|-+-++.+ +..-.+|+..||+-+
T Consensus 283 tL~rQk~v~~~~~av~etTN~lL~~nAemlKen~ieiak~~~~~~IdieTlk~t~~~v-------v~~ieet~~i~ee~r 355 (386)
T COG3853 283 TLKRQKKVLKAQQAVNETTNELLLSNAEMLKENSIEIAKQAERPTIDIETLKKTQQSV-------VAAIEETSQIQEEGR 355 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 4667777777776666655555555566677777666666655544444444444444 444448999999988
Q ss_pred hhhHHHHHHHHHHHH
Q 012087 402 SKQASMFIALDKLFA 416 (471)
Q Consensus 402 ~kq~~if~~ld~l~~ 416 (471)
.|=+--...||++-.
T Consensus 356 ~kr~~~~~~L~~l~~ 370 (386)
T COG3853 356 KKRADTIRELDKLEE 370 (386)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777788888755
No 130
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=37.68 E-value=4.3e+02 Score=26.36 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=13.3
Q ss_pred hchHHHHHhhHHHHHHHHH
Q 012087 331 HGQSTALESLQLLTKFQSE 349 (471)
Q Consensus 331 ~gQ~~a~~~l~~l~~~q~~ 349 (471)
.+=+..|.+||.+|+.|-+
T Consensus 140 ~~aa~~l~~LN~~Ye~QL~ 158 (202)
T TIGR03513 140 SSLAANMEGLNTIYEAQLK 158 (202)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345568889999987644
No 131
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=37.65 E-value=3.5e+02 Score=25.39 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=8.3
Q ss_pred HHhhhHHHHHHHHHHHH
Q 012087 400 FESKQASMFIALDKLFA 416 (471)
Q Consensus 400 f~~kq~~if~~ld~l~~ 416 (471)
|.+++..+|..++.+..
T Consensus 164 fd~~~~~~~~~~~~~~~ 180 (204)
T PF04740_consen 164 FDQQSSSIFSEIEELLQ 180 (204)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 44445555554444444
No 132
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=37.33 E-value=3.3e+02 Score=24.99 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 012087 349 EALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHD 384 (471)
Q Consensus 349 ~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~ 384 (471)
+|-++++..+..+...-..--++.+......++...
T Consensus 123 k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e 158 (191)
T cd07610 123 KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREE 158 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777776666555555555555444444443
No 133
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.19 E-value=4.6e+02 Score=26.64 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhchH---HHHH-HHHHHH--hhhHHHH-HHHHHHHHHH
Q 012087 377 EQLQEVHDHLFKNSR---SILA-AQEAFE--SKQASMF-IALDKLFALH 418 (471)
Q Consensus 377 e~~~~~h~~l~~~s~---~~l~-aqe~f~--~kq~~if-~~ld~l~~l~ 418 (471)
|.++.=|+||=.+.+ ..++ ||++-+ .-|-++| .+=.|+..+-
T Consensus 142 e~~lkE~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a 190 (231)
T KOG3208|consen 142 EMYLKEHDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIA 190 (231)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445666777744443 5566 888877 6677777 4444554443
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.56 E-value=3.6e+02 Score=25.17 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 012087 259 KEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKE 293 (471)
Q Consensus 259 ~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~ 293 (471)
.+...+.+..+.+.|+.+-++...+.++..+...+
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666433333333
No 135
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.41 E-value=1e+03 Score=30.37 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 012087 374 KRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAML 422 (471)
Q Consensus 374 ~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~ld~l~~l~n~~l 422 (471)
.+++|+.+-+.+|-.-+..-+.|||+++.=...-=+.++---.++++|.
T Consensus 586 ~~~~qL~~~i~~l~~~ap~W~~a~~al~~L~eq~g~~~~~~~~v~~~mq 634 (1486)
T PRK04863 586 QQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ 634 (1486)
T ss_pred HHHHHHHHHHHHHHHhChHHHhhHHHHHHHHHhcchhhcCHHHHHHHHH
Confidence 3444444445555555555666666666433333344444444555554
No 136
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=35.75 E-value=2.4e+02 Score=23.62 Aligned_cols=38 Identities=5% Similarity=0.009 Sum_probs=31.8
Q ss_pred HHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012087 324 DKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELA 362 (471)
Q Consensus 324 enQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~ 362 (471)
.|-..|+.-|... ..++...++||..++-.+...+.+.
T Consensus 32 ~nP~~La~~Q~~~-~qYs~~~n~qSs~iK~iKD~~~~Ii 69 (72)
T TIGR02105 32 NDPELMAELQFAL-NQYSAYYNIESTIVKMIKDLDSGIL 69 (72)
T ss_pred CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888876 7799999999999888888877754
No 137
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=35.64 E-value=5.6e+02 Score=27.13 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhH
Q 012087 267 ATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADN 314 (471)
Q Consensus 267 a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~ 314 (471)
+.+......|-+...++......-+.=|.+|-++|..-|..++.....
T Consensus 332 ~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~ 379 (388)
T PF04912_consen 332 AEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKK 379 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333344444444444444444444333
No 138
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.46 E-value=4.5e+02 Score=25.95 Aligned_cols=31 Identities=6% Similarity=0.102 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 266 MATLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 266 ~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
+..+.+.|..|-++.+.++++..+++.++..
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346666666766666666666555555554
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.05 E-value=6.9e+02 Score=28.00 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=5.4
Q ss_pred HHHHHHHhhHHHHH
Q 012087 184 KLEIIEEKSDTLLQ 197 (471)
Q Consensus 184 ~Le~l~e~q~~Lle 197 (471)
+|+..++.-+.+++
T Consensus 348 qlen~k~~~e~~~~ 361 (493)
T KOG0804|consen 348 QLENQKQYYELLIT 361 (493)
T ss_pred HHHhHHHHHHHHHH
Confidence 33343333333333
No 140
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=35.01 E-value=3e+02 Score=23.84 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhh
Q 012087 251 LQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG 316 (471)
Q Consensus 251 l~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~ 316 (471)
....+.+++..+.+.++.+..+|..|..=.++-..--.+....|..+-+.+...+..|.-.+..+.
T Consensus 45 ~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~~l~~i~~~~~ 110 (113)
T PF02520_consen 45 VQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVDTLFFIRKEIE 110 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 334666777778888888888888887766666556677888888888888888777776666554
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=34.79 E-value=8.4e+02 Score=28.93 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=95.8
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHH
Q 012087 258 IKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTAL 337 (471)
Q Consensus 258 m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~ 337 (471)
+++.-..-+.++.+.|+.++.+.+++..++-.+..+++.-+| +-.-.+.+..+..+.++-.. ++. ..||..-
T Consensus 47 ~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeELr~q~e-~~rL~~~~e~~~~e~e~l~~--ld~----~~~q~~r- 118 (775)
T PF10174_consen 47 LRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEELRAQRE-LNRLQQELEKAQYEFESLQE--LDK----AQEQFER- 118 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHhhhcccccchhhh--hhh----HHHHHHH-
Confidence 444444456778889999888888888888888888844332 11112222222322222222 444 4444443
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhh---------hhchHHHHHHHHHHHhhhHHHH
Q 012087 338 ESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL---------FKNSRSILAAQEAFESKQASMF 408 (471)
Q Consensus 338 ~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l---------~~~s~~~l~aqe~f~~kq~~if 408 (471)
|+.=++-+..=|+..|.|+.++-.---++|.+|-.+++.|....+.| ....+.++.....-++.+..+-
T Consensus 119 --l~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le 196 (775)
T PF10174_consen 119 --LQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLE 196 (775)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHH
Confidence 33345555567888899999988888889999999999999999988 3333456666666666666665
Q ss_pred HHHHHHHHHHH
Q 012087 409 IALDKLFALHN 419 (471)
Q Consensus 409 ~~ld~l~~l~n 419 (471)
..|++--.-||
T Consensus 197 ~lle~~e~~~~ 207 (775)
T PF10174_consen 197 SLLERKEKEHM 207 (775)
T ss_pred HHHHHHHHHhh
Confidence 55555444443
No 142
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.43 E-value=5.4e+02 Score=26.63 Aligned_cols=31 Identities=23% Similarity=0.191 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQ 380 (471)
Q Consensus 350 aleesr~tiq~~~~~~~~~qeell~~Qe~~~ 380 (471)
++++--+++..+...-..++..|-..|-+..
T Consensus 166 ~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 166 ALEDKLETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555544444444444444444433
No 143
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=34.11 E-value=3.4e+02 Score=24.12 Aligned_cols=41 Identities=10% Similarity=0.223 Sum_probs=24.2
Q ss_pred HhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHH
Q 012087 296 KAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTA 336 (471)
Q Consensus 296 ~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a 336 (471)
++...+..-|+..|....+.-.....-++-|.+...+...-
T Consensus 92 ~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i~~~~~td 132 (151)
T cd00179 92 GLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEITGGEATD 132 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCh
Confidence 33444555566666666666666666666666666655444
No 144
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.86 E-value=1.6e+02 Score=24.60 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=13.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+.+....+...++++...-..+..+++.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444454444444444444
No 145
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=33.76 E-value=4.3e+02 Score=25.22 Aligned_cols=30 Identities=47% Similarity=0.535 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhh-------hhchHHHHH-HHHHHH
Q 012087 372 LLKRQEQLQEVHDHL-------FKNSRSILA-AQEAFE 401 (471)
Q Consensus 372 ll~~Qe~~~~~h~~l-------~~~s~~~l~-aqe~f~ 401 (471)
.-+||++--++--|| .++|-|||- ||+.|+
T Consensus 87 i~EWq~k~~E~~~~lhqL~~~ptKtSlSil~Qt~~Qfe 124 (165)
T TIGR02131 87 IEEWQDKTHEALAHLHELFFNPSKSSLSILKQAQEQFE 124 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHH
Confidence 345666555444444 456668887 888887
No 146
>PRK02224 chromosome segregation protein; Provisional
Probab=33.72 E-value=8.1e+02 Score=28.41 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.2
Q ss_pred HHHHHHHhhHH
Q 012087 268 TLIDAYSNLGK 278 (471)
Q Consensus 268 ~~~e~y~~lg~ 278 (471)
.+.+.+..+..
T Consensus 283 ~~~~~~~~le~ 293 (880)
T PRK02224 283 DLRERLEELEE 293 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 147
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.68 E-value=6.1e+02 Score=27.01 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=64.7
Q ss_pred hhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Q 012087 301 MFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQ 380 (471)
Q Consensus 301 ~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~ 380 (471)
-..|.+++....++. ..|++.|++-|..=.+ +|.+.+.++=.|.++.++++ ++++.+++..+.
T Consensus 23 Y~qKleel~~lQ~~C----~ssI~~QkkrLk~L~~------sLk~~~~~~~~e~~~~i~~L-------~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 23 YKQKLEELSKLQDKC----SSSISHQKKRLKELKK------SLKRCKKSLSAEERELIEKL-------EEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------HHHHhccCCChhHHHHHHHH-------HHHHHHHHhhHH
Confidence 334444454444443 3455666665432222 34443333333444444444 345777788888
Q ss_pred HHHHhhhhc-h----------H-HHHHHH---------HHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 381 EVHDHLFKN-S----------R-SILAAQ---------EAFESKQASMFIA--LDKLFALHNAMLLESRMIKAFFIYSLS 437 (471)
Q Consensus 381 ~~h~~l~~~-s----------~-~~l~aq---------e~f~~kq~~if~~--ld~l~~l~n~~l~E~~~~k~f~~y~~~ 437 (471)
++..-|=+. . + +++.-| |.|+-+-+.|+-. +==+|.+|+.++-+.-.|=-.+|||-.
T Consensus 86 DmEa~LPkkNGlyL~liLGnVNVsll~k~~kf~yKdEYEkFKl~~tii~l~~~~~~~~~~~~r~~d~~~~f~lvwyY~tL 165 (330)
T PF07851_consen 86 DMEAFLPKKNGLYLRLILGNVNVSLLSKQAKFKYKDEYEKFKLYLTIILLLFAVALLFLLNYRVLDQLFNFLLVWYYCTL 165 (330)
T ss_pred HHHhhCCCCCCcccceecccccceecccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 888766222 1 1 344434 4555555666533 333566777777777777777788765
No 148
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.58 E-value=1e+03 Score=29.51 Aligned_cols=19 Identities=5% Similarity=0.109 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 012087 368 QQEELLKRQEQLQEVHDHL 386 (471)
Q Consensus 368 ~qeell~~Qe~~~~~h~~l 386 (471)
.+-+.-..+++|......|
T Consensus 1073 l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1073 ALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666
No 149
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=33.53 E-value=6.4e+02 Score=27.18 Aligned_cols=31 Identities=10% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhHhhhhhccc
Q 012087 292 KEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (471)
Q Consensus 292 ~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~S 322 (471)
..+++--+++..-+++++..+.||..-++..
T Consensus 323 ~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D~ 353 (370)
T PLN03094 323 ELLRQSIYTLTKTLKHIESISSDISGFTGDE 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 3444444556666677777777777766653
No 150
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=33.40 E-value=7.1e+02 Score=27.68 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhhhchHHHHH
Q 012087 371 ELLKRQEQLQEVHDHLFKNSRSILA 395 (471)
Q Consensus 371 ell~~Qe~~~~~h~~l~~~s~~~l~ 395 (471)
++-..++++..+.+.+.+.+..+-.
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~ 371 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSL 371 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555444
No 151
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=33.03 E-value=6.6e+02 Score=28.09 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=4.8
Q ss_pred CCCCchHH
Q 012087 73 IGSNACWQ 80 (471)
Q Consensus 73 ~~~~~CW~ 80 (471)
+..+.+|-
T Consensus 308 ~~~~Idwg 315 (507)
T PF05600_consen 308 ESGGIDWG 315 (507)
T ss_pred ccCCcccc
Confidence 45566775
No 152
>PTZ00464 SNF-7-like protein; Provisional
Probab=33.00 E-value=5e+02 Score=25.75 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=18.2
Q ss_pred hhhhHhHHHHHHHHhHhhhhhccch
Q 012087 299 DAMFSSMEQLQRKADNIGSMAGDSL 323 (471)
Q Consensus 299 ~~~s~~m~~Lq~~a~~I~~~~~~Sl 323 (471)
|.+-..|++....+++|++..+.++
T Consensus 127 d~l~Dei~E~~e~~~EI~e~Ls~~~ 151 (211)
T PTZ00464 127 EDLQDELADLYEDTQEIQEIMGRAY 151 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4455667777888888888887764
No 153
>PF05073 Baculo_p24: Baculovirus P24 capsid protein; InterPro: IPR007765 The Culex nigripalpus NPV (Culex nigripalpus nucleopolyhedrovirus) protein p24 is associated with nucleocapsids of budded and polyhedra-derived virions [, ].; GO: 0019028 viral capsid
Probab=32.41 E-value=3e+02 Score=27.08 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=34.5
Q ss_pred HHhHhhHHHHHHhhhhHHH--------HHHHHHHHHHhHHH-HHHHHHHHHHhhHHHHHhhHh
Q 012087 148 LLETNSICYQLQAHGFQYE--------TERLVNELKKSADY-TEHKLEIIEEKSDTLLQSSNQ 201 (471)
Q Consensus 148 ~~ht~sIC~~Lq~e~Fq~~--------TE~tVnkL~~sS~~-a~e~Le~l~e~q~~Lle~~~~ 201 (471)
|.|+..+|=||.+-.-... -.++|.+|.-++.. +.+-|..++..-..|-+..+.
T Consensus 64 yvHvf~l~KYLs~y~ls~~~~p~~Y~~LKqLi~DLl~G~Q~~~~dpL~eIK~qLc~iqe~l~~ 126 (182)
T PF05073_consen 64 YVHVFALCKYLSSYNLSDSKHPPEYYTLKQLIRDLLVGAQSEIVDPLCEIKTQLCTIQECLNE 126 (182)
T ss_pred eehHHHHHHHHHhCCCcccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688888888876544333 36788888776654 455566666666555554443
No 154
>PRK04863 mukB cell division protein MukB; Provisional
Probab=32.41 E-value=1.2e+03 Score=29.87 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012087 406 SMFIALDKLFALHNAMLL 423 (471)
Q Consensus 406 ~if~~ld~l~~l~n~~l~ 423 (471)
.+-.-.++++..+...-.
T Consensus 656 ~L~~~i~~l~~~~~g~~~ 673 (1486)
T PRK04863 656 ALDEEIERLSQPGGSEDP 673 (1486)
T ss_pred HHHHHHHhhhccCCCccH
Confidence 333555555555555543
No 155
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=32.17 E-value=27 Score=25.80 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=31.4
Q ss_pred CCCchHHHHHHHHhccchhhhccHhHHHHHHHHhhccchh
Q 012087 74 GSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQK 113 (471)
Q Consensus 74 ~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNCfle 113 (471)
++..|+.++..-|. +|..+ +++.+.||=-||.+|..+
T Consensus 6 Gy~~C~~Ev~~fLs-~~~~~--~~~~~~~Ll~HL~~~~~~ 42 (45)
T smart00511 6 GYRECANEVSRFLS-QLPGT--DPDVRARLLSHLQTHLNQ 42 (45)
T ss_pred HHHHHHHHHHHHHh-cCCCC--ChHHHHHHHHHHHHHHHh
Confidence 68899999988876 67778 888999999999888654
No 156
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=31.90 E-value=1.2e+02 Score=23.53 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 012087 161 HGFQYETERLVNELKKSADYTEHKLEIIEEK 191 (471)
Q Consensus 161 e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~ 191 (471)
-.||..|...+..|...-..+..+|+.++.+
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999999999998877777788777653
No 157
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=31.63 E-value=31 Score=25.76 Aligned_cols=16 Identities=38% Similarity=0.870 Sum_probs=11.2
Q ss_pred cchhHHHHHHHHHHHhc
Q 012087 454 RPRLYIGKHMFLYLLAI 470 (471)
Q Consensus 454 r~~ly~gl~~~~~~~~~ 470 (471)
|-.||.||+. +|++||
T Consensus 16 RTSLy~GlLl-ifvl~v 31 (39)
T PRK00753 16 RTSLYLGLLL-VFVLGI 31 (39)
T ss_pred hhhHHHHHHH-HHHHHH
Confidence 6789999875 445543
No 158
>PF15237 PTRF_SDPR: PTRF/SDPR family
Probab=30.96 E-value=3.6e+02 Score=27.68 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=24.6
Q ss_pred hhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHH
Q 012087 202 IHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVY 238 (471)
Q Consensus 202 ~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~ 238 (471)
++.+...|+..|..+..+.+.++..|..|.+.+.+..
T Consensus 21 vQ~~Q~~mE~RQ~emE~sV~~IQ~dl~KLsk~H~~Ts 57 (246)
T PF15237_consen 21 VQETQQRMEERQREMEGSVKGIQGDLTKLSKSHSTTS 57 (246)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcccHH
Confidence 3334445667777777888888888877766665444
No 159
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.69 E-value=5.5e+02 Score=28.74 Aligned_cols=35 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhh
Q 012087 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQI 202 (471)
Q Consensus 168 E~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~ 202 (471)
..||..|.....++...+..+....+.|.++-+++
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888777777644443
No 160
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.97 E-value=3.6e+02 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGD 299 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~ 299 (471)
+.++.+...+..||+.+..++.|+....+
T Consensus 137 ~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 137 QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777888888888888877443
No 161
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=29.66 E-value=2.9e+02 Score=23.44 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=23.3
Q ss_pred hhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhH
Q 012087 300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ 341 (471)
Q Consensus 300 ~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~ 341 (471)
.+..|...||...+++..+.-. .+.=..=||||...+..|+
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~~~-v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNLPD-VTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHH
Confidence 3444555677777666665532 1111222688888877776
No 162
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=29.47 E-value=3.5e+02 Score=24.11 Aligned_cols=41 Identities=20% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 224 RDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDE 264 (471)
Q Consensus 224 ~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~ 264 (471)
..++..+...-.++.....++-.-...|.-+-..+|+.|+.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444455555555555543
No 163
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.46 E-value=1e+03 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 012087 249 TELQEGQVRIKEKLDEGMA 267 (471)
Q Consensus 249 ~el~~~q~~m~~kid~g~a 267 (471)
.+-..+..+++-.++++++
T Consensus 490 q~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 490 QQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555444
No 164
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=29.31 E-value=2.3e+02 Score=20.78 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 273 YSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 273 y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
...|...+..+++.+.+|..+|..
T Consensus 8 l~~l~~~i~~l~~l~~~i~~~v~~ 31 (60)
T cd00193 8 LEQLEASIGELKQIFLDLGTEVEE 31 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445455555444
No 165
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=29.12 E-value=4.8e+02 Score=24.40 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=10.1
Q ss_pred HHHHHHHhhHHHHHhhHhhhhhh
Q 012087 184 KLEIIEEKSDTLLQSSNQIHDSL 206 (471)
Q Consensus 184 ~Le~l~e~q~~Lle~~~~~~dsL 206 (471)
.|....+.-+.++...+.+.+.|
T Consensus 8 ~L~~~~~~~~~ll~~~~~~~~~l 30 (157)
T PF04136_consen 8 YLQQYREECDQLLDQTDEILDQL 30 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444554444433333
No 166
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=28.95 E-value=8.4e+02 Score=29.96 Aligned_cols=70 Identities=23% Similarity=0.280 Sum_probs=48.5
Q ss_pred HHhHhhchHHHHHh-hH-HHHHHHHHHHHHHHHHHHH-HHHHhHHhHHHHHHHHHHHHHHHHh-hhhchHHHHH
Q 012087 326 QQQLLHGQSTALES-LQ-LLTKFQSEALAESRNTLQE-LAEYGHKQQEELLKRQEQLQEVHDH-LFKNSRSILA 395 (471)
Q Consensus 326 Q~~LL~gQ~~a~~~-l~-~l~~~q~~aleesr~tiq~-~~~~~~~~qeell~~Qe~~~~~h~~-l~~~s~~~l~ 395 (471)
|+.|+-.=..++.| |+ .|...=+++|+..-+..++ |.|+--+.++.+-.+|+||-+.--+ +++--..|++
T Consensus 899 Q~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~e~la~~e~~~r~~~~qi~q~ltq~~s~~~~~~~e 972 (1283)
T KOG1916|consen 899 QKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQEELAKNEKALRDLQQQITQQLTQFLSKELNAMFE 972 (1283)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333455677 77 7888888999999888887 8888888888888888887665443 3333334554
No 167
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=28.77 E-value=8.3e+02 Score=27.03 Aligned_cols=22 Identities=5% Similarity=-0.043 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 012087 246 ASQTELQEGQVRIKEKLDEGMA 267 (471)
Q Consensus 246 ~sq~el~~~q~~m~~kid~g~a 267 (471)
+...+...-..+|++.+++++.
T Consensus 124 el~~~~~~~Ll~~~~~~~e~f~ 145 (448)
T COG1322 124 ELNQQNLKQLLKPLREVLEKFR 145 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455556666655543
No 168
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=28.66 E-value=5.9e+02 Score=25.27 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH
Q 012087 179 DYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 179 ~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~ 228 (471)
......++.+.-+...|.....+++.+++.++.--.+|.+-...+..++.
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777788777777777666555554455444444444443
No 169
>PRK10780 periplasmic chaperone; Provisional
Probab=28.47 E-value=4.9e+02 Score=24.20 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhh
Q 012087 286 EAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMA 319 (471)
Q Consensus 286 ~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~ 319 (471)
+.....+++....+.+-.+++.+|..+..++...
T Consensus 51 ~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~ 84 (165)
T PRK10780 51 EFKGRASELQRMETDLQAKMQKLQRDGSTMKGSD 84 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHH
Confidence 3333344444444444445555655554444444
No 170
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.33 E-value=3.7e+02 Score=22.82 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLG 277 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg 277 (471)
|-.+.-+|...+.+|+.+-++-++++....++-|
T Consensus 44 ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 44 IRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5556667777888888888888777777666544
No 171
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=27.59 E-value=5.5e+02 Score=24.52 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHH
Q 012087 160 AHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239 (471)
Q Consensus 160 ~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e 239 (471)
+..|...||.-|-+-++.|+...-.|....+.=..|...=+++...|.++..-.++-.+..-.+...++-|......+.+
T Consensus 68 S~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~ 147 (159)
T PF05384_consen 68 SRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSE 147 (159)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q ss_pred hHHHHHHHHH
Q 012087 240 QSKEIAASQT 249 (471)
Q Consensus 240 ~~keIa~sq~ 249 (471)
...+....|.
T Consensus 148 ~~e~~~~~q~ 157 (159)
T PF05384_consen 148 QIEDAQQKQQ 157 (159)
T ss_pred HHHHHHHhhh
No 172
>CHL00038 psbL photosystem II protein L
Probab=27.28 E-value=40 Score=25.08 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=11.0
Q ss_pred cchhHHHHHHHHHHHhc
Q 012087 454 RPRLYIGKHMFLYLLAI 470 (471)
Q Consensus 454 r~~ly~gl~~~~~~~~~ 470 (471)
|-.||.||+. +|++|+
T Consensus 15 RTSLy~GLLl-ifvl~v 30 (38)
T CHL00038 15 RTSLYWGLLL-IFVLAV 30 (38)
T ss_pred hhhHHHHHHH-HHHHHH
Confidence 6789999875 444443
No 173
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=27.21 E-value=1.8e+02 Score=30.84 Aligned_cols=6 Identities=33% Similarity=0.479 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012087 350 ALAESR 355 (471)
Q Consensus 350 aleesr 355 (471)
+|..+|
T Consensus 265 IL~aAR 270 (370)
T PF02994_consen 265 ILKAAR 270 (370)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 174
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=27.16 E-value=4.1e+02 Score=22.89 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=31.9
Q ss_pred chHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012087 322 SLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAE 363 (471)
Q Consensus 322 SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~ 363 (471)
..+|=..|-+-|++. ..++-.+++||..++..+.+.+.+.+
T Consensus 37 ~pdnP~~LA~~Qa~l-~eyn~~RNaQSn~iKa~KD~~~aIIq 77 (80)
T PRK15326 37 KPSDPALLAAYQSKL-SEYNLYRNAQSNTVKVFKDIDAAIIQ 77 (80)
T ss_pred CCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777776 67889999999999999888887654
No 175
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=27.02 E-value=6e+02 Score=24.83 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH-HHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIE-IEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKF 346 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~-i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~ 346 (471)
.+.+++.++|+-.+++.....+ -..+.-.+|++|..=+-.+++.=+ .+.-..++...++++..
T Consensus 67 ~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~---------------~f~~R~~a~~~~q~a~~- 130 (224)
T cd07623 67 SLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKD---------------VFHERVKVWQNWQNAQQ- 130 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH-
Confidence 3456666666666666553333 344555555555555544443322 23334445444444433
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012087 347 QSEALAESRNTLQELAE 363 (471)
Q Consensus 347 q~~aleesr~tiq~~~~ 363 (471)
.|.+-|+.+.++..
T Consensus 131 ---~l~kkr~~~~Kl~~ 144 (224)
T cd07623 131 ---TLTKKREAKAKLEL 144 (224)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 45555666655543
No 176
>PRK14011 prefoldin subunit alpha; Provisional
Probab=26.61 E-value=2.9e+02 Score=25.84 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhh
Q 012087 263 DEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG 316 (471)
Q Consensus 263 d~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~ 316 (471)
++++..+.+--+.|.+..+++.....++..++..+...|-.+++.++..+...+
T Consensus 87 ~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~~~ 140 (144)
T PRK14011 87 SEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQMK 140 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344444454455555555555555555555555555555556666655554433
No 177
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=26.57 E-value=6.5e+02 Score=26.72 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=49.0
Q ss_pred HhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 219 TAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 219 tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
.-+.+.++++...+|.--+-+-...|......|.++=+-|++.++.++.+=.+. ..+..-+++++.+-.....+|+.++
T Consensus 237 al~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~-~~vk~vv~el~k~~~~f~~qleELe 315 (336)
T PF05055_consen 237 ALKKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDE-EAVKEVVKELKKNVESFTEQLEELE 315 (336)
T ss_pred HHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445666777777777766667777788888888888888888888887654332 1233334444444433344444433
Q ss_pred h
Q 012087 299 D 299 (471)
Q Consensus 299 ~ 299 (471)
|
T Consensus 316 e 316 (336)
T PF05055_consen 316 E 316 (336)
T ss_pred H
Confidence 3
No 178
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.54 E-value=3.2e+02 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHHhhHHHHHHHHHHH
Q 012087 263 DEGMATLIDAYSNLGKEVNNLRDEA 287 (471)
Q Consensus 263 d~g~a~~~e~y~~lg~~~e~l~~~~ 287 (471)
+++...+.+--+.+.+.++++.+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l 109 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEAL 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444344443333
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.47 E-value=4.8e+02 Score=23.47 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=9.6
Q ss_pred hHHHHhHhhchHHH
Q 012087 323 LDKQQQLLHGQSTA 336 (471)
Q Consensus 323 lenQ~~LL~gQ~~a 336 (471)
|..|..||.-|-.+
T Consensus 117 L~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 117 LNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHhh
Confidence 46788888777543
No 180
>PRK11281 hypothetical protein; Provisional
Probab=26.46 E-value=1.3e+03 Score=28.55 Aligned_cols=46 Identities=11% Similarity=0.297 Sum_probs=24.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhh
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~ 317 (471)
..+...+..........+...+.+.....|++-.+.+|+.-..+.+
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333334444445555666666666666666666655554444
No 181
>PF03429 MSP1b: Major surface protein 1B; InterPro: IPR005091 The major surface protein (MSP1) of the cattle pathogen Anaplasma is a heterodimer comprised of MSP1a and MSP1b. This family is the MSP1b chain. The MSP1 proteins are putative adhesins for bovine erythrocytes.
Probab=26.42 E-value=1.2e+02 Score=33.73 Aligned_cols=82 Identities=18% Similarity=0.273 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHhh-----hhhhHhHHHHHHHHhHhhhhh
Q 012087 252 QEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK-------EISKAG-----DAMFSSMEQLQRKADNIGSMA 319 (471)
Q Consensus 252 ~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~-------~i~~vg-----~~~s~~m~~Lq~~a~~I~~~~ 319 (471)
+=|..-+++.||+++.|+.+..+-|++|--++.+-..+-.. |+..+| +.|+..---+.-..+.||+.+
T Consensus 146 AwGLaGfKrTvDEslEMLgRGMhMlaEGQA~isqGi~~K~t~lVreGLE~SrLGaglC~ngLveasyGvsyane~MGK~A 225 (726)
T PF03429_consen 146 AWGLAGFKRTVDESLEMLGRGMHMLAEGQAQISQGIEAKDTELVREGLETSRLGAGLCRNGLVEASYGVSYANETMGKYA 225 (726)
T ss_pred HHhhhhhhhhhhhHHHHHhhHHHHHhhhHHHHhcccccccHHHHHhHhHhcccchhhHhcchHHhhhhhhhhhchhhhhh
Confidence 44677789999999999999999988887777663322222 344555 333333334455667999999
Q ss_pred ccchHHHHhHhhch
Q 012087 320 GDSLDKQQQLLHGQ 333 (471)
Q Consensus 320 ~~SlenQ~~LL~gQ 333 (471)
|+-|||=+.-|+-=
T Consensus 226 GKGLEKCknKL~~A 239 (726)
T PF03429_consen 226 GKGLEKCKNKLEAA 239 (726)
T ss_pred cccHHHHHHHHHHH
Confidence 99999988777643
No 182
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.08 E-value=4.2e+02 Score=22.73 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=5.8
Q ss_pred HhHHHHHHHHHhhHH
Q 012087 264 EGMATLIDAYSNLGK 278 (471)
Q Consensus 264 ~g~a~~~e~y~~lg~ 278 (471)
+...+|..++..|..
T Consensus 8 ~al~rL~~aid~LE~ 22 (89)
T PF13747_consen 8 AALTRLEAAIDRLEK 22 (89)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 183
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=25.95 E-value=6.1e+02 Score=28.42 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=41.6
Q ss_pred HHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHH
Q 012087 187 IIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEG 254 (471)
Q Consensus 187 ~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~ 254 (471)
.+...|...+.+..+ +.+++..+.+|.+. .+.+.|+.+.+.+.+|..+++.+.|.++.+-
T Consensus 390 rlR~hQRkfL~AI~~----fR~Vk~~qRkl~e~----~nsl~d~aK~~~~myd~~~~l~~~q~~le~q 449 (489)
T KOG3684|consen 390 RLRKHQRKFLQAIHQ----FRSVKWEQRKLSEQ----ANSLVDLAKTQNDMYDLLQELHSRQEELEKQ 449 (489)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHhh----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777765553 66777777777766 4455678888888888888887777765433
No 184
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=25.80 E-value=9.5e+02 Score=26.70 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419 (471)
Q Consensus 350 aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~ld~l~~l~n 419 (471)
+|++-....-..-.....-++|+..-..++.+..-.+-.--..+..|+.++++--++--.||+.|-.|.+
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e 442 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSE 442 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444555666777777788888887766555557777999999888999999999988654
No 185
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.77 E-value=4e+02 Score=22.28 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Q 012087 247 SQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRD 285 (471)
Q Consensus 247 sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~ 285 (471)
...++......+....+.--..|...|..+..-+++.++
T Consensus 22 ~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~ 60 (127)
T smart00502 22 ALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKK 60 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444555555555554444443
No 186
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=25.71 E-value=1.3e+03 Score=28.34 Aligned_cols=17 Identities=12% Similarity=-0.029 Sum_probs=12.8
Q ss_pred HHhHhhHHHHHHhhhhH
Q 012087 148 LLETNSICYQLQAHGFQ 164 (471)
Q Consensus 148 ~~ht~sIC~~Lq~e~Fq 164 (471)
....+.-|++-+...|+
T Consensus 223 ~~~~~i~~W~~~~~~~~ 239 (1201)
T PF12128_consen 223 LKKNDIDDWLRDIRASQ 239 (1201)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 55667778888888776
No 187
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.62 E-value=1.2e+03 Score=27.74 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHH-------HHHhhHHHHHhhHhhhhhhhhHHHH---HHHHHHHhHhHHHHHHHHHHhHHH
Q 012087 167 TERLVNELKKSADYTEHKLEI-------IEEKSDTLLQSSNQIHDSLDSIDHR---VQNVAQTAKGVRDLMDILSRHSEV 236 (471)
Q Consensus 167 TE~tVnkL~~sS~~a~e~Le~-------l~e~q~~Lle~~~~~~dsL~si~~q---~~~La~tsk~v~~~i~dl~~~s~~ 236 (471)
.|..||+|..+-.++..-.+. -.+.-..+.+.++.+...-+-++.+ -.+|-+....+-++++.-+.|.++
T Consensus 216 SE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~a 295 (867)
T KOG2148|consen 216 SEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAA 295 (867)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHh
Confidence 488999998887776543333 2233333333333333222222222 334455556667777755555555
Q ss_pred HHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHH
Q 012087 237 VYNQS-----KEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQR 310 (471)
Q Consensus 237 i~e~~-----keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~ 310 (471)
+.+.. +.|.+-..-..-.+.-|.-.||-++..+ ++|+.--++.+++++-. ++.+...|.+-|.+|.+
T Consensus 296 L~egdf~~a~~~ieact~aA~al~q~~~~~ldp~~l~m-~Avkdqr~eleklk~~F------vrrlssfLnnlF~~l~d 367 (867)
T KOG2148|consen 296 LTEGDFDEADQGIEACTWAAKALRQLMNPNLDPIYLNM-RAVKDQRAELEKLKATF------VRRLSSFLNNLFASLGD 367 (867)
T ss_pred cccCCccccchhHHHHHHHHHHHHHhhcCCCCHHHHHH-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcc
Confidence 55321 3344444444445555666666666554 67777778888887744 34455555555555544
No 188
>PF01080 Presenilin: Presenilin Alzheimer disease; InterPro: IPR001108 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22A, the type example being presenilin 1 from Homo sapiens (Human). Presenilins are polytopic transmembrane (TM) proteins, mutations in which are associated with the occurrence of early-onset familial Alzheimer's disease, a rare form of the disease that results from a single-gene mutation [, ]. The physiological functions of presenilins are unknown, but they may be related to developmental signalling, apoptotic signal transduction, or processing of selected proteins, such as the beta-amyloid precursor protein(beta-APP). There are a number of subtypes which belong to this presenilin family. That presenilin homologues have been identified in species that do not have an Alzhemier's disease correlate suggests that they may have functions unrelated to the disease, homologues having been identified in mouse, Drosophila melanogaster, Caenorhabditis elegans [] and other members of the eukarya including plants. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 2KR6_A.
Probab=25.54 E-value=64 Score=35.01 Aligned_cols=47 Identities=32% Similarity=0.335 Sum_probs=27.0
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhc
Q 012087 424 ESRMIK----AFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGKHMFLYLLAI 470 (471)
Q Consensus 424 E~~~~k----~f~~y~~~~~~iym~ts~k~T~~~r~~ly~gl~~~~~~~~~ 470 (471)
|.+-+| =|+||.+.+==-.+--+..-+...=.-..+|||+|+++|++
T Consensus 322 ~~~~~klGlGDFiFYs~Lvg~aa~~~~~~~~~~~~~ail~Gl~~Tl~~l~~ 372 (403)
T PF01080_consen 322 EERGIKLGLGDFIFYSVLVGRAAMYGDWNTVVACFVAILIGLCLTLLLLAI 372 (403)
T ss_dssp -SS--SS-TTTHHHHHHHHHHHHHH-TTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceeecchhHHHHHHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444 47888877655444333333333334567899999999885
No 189
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.39 E-value=1.1e+03 Score=27.10 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhh---hhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 012087 172 NELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDS---LDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQ 248 (471)
Q Consensus 172 nkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~ds---L~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq 248 (471)
.+|..-+....+.+..+.+-..+|-.-.+.+.-- |+.++.....|..-.+.-...++++..-...+.+....|.++-
T Consensus 262 ~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~ 341 (557)
T COG0497 262 GKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSE 341 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 012087 249 TELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (471)
Q Consensus 249 ~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~L 308 (471)
..+.....++ ...+..+-+.+++|...=....+++.+ .+...|..|
T Consensus 342 ~~~~~Le~~~-----------~~l~~~~~~~A~~Ls~~R~~~A~~L~~---~v~~eL~~L 387 (557)
T COG0497 342 ESLEALEKEV-----------KKLKAELLEAAEALSAIRKKAAKELEK---EVTAELKAL 387 (557)
T ss_pred hHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhc
No 190
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.30 E-value=4.4e+02 Score=22.68 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=11.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+.+--..+.+.++++.+....+..++..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 119 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITE 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334333333333333333333
No 191
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.16 E-value=1.3e+03 Score=28.25 Aligned_cols=153 Identities=13% Similarity=0.267 Sum_probs=69.9
Q ss_pred HHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhh--HHH-----HHHHHHHHhHhHHHHHHHH
Q 012087 158 LQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDS--IDH-----RVQNVAQTAKGVRDLMDIL 230 (471)
Q Consensus 158 Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~s--i~~-----q~~~La~tsk~v~~~i~dl 230 (471)
-|.+-|+.+.-.-.-.|-.--.++....+...+-+++.-+.+.+..|+.+- +++ ..+-|..-...+.+-++.+
T Consensus 265 eqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~del 344 (1243)
T KOG0971|consen 265 EQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDEL 344 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555555555555555555555555555555555565555431 111 1111111112222223322
Q ss_pred HHhHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012087 231 SRHSEVVYNQSK---------------EIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEIS 295 (471)
Q Consensus 231 ~~~s~~i~e~~k---------------eIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~ 295 (471)
..-.+-+++... .|..-...|++..++||+-.... .---..+.+++|+.+++. ++++
T Consensus 345 etdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~e----k~d~qK~~kelE~k~sE~----~eL~ 416 (1243)
T KOG0971|consen 345 ETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASE----KQDHQKLQKELEKKNSEL----EELR 416 (1243)
T ss_pred HHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHHHhhHH----HHHH
Confidence 222222222111 12333333444444444332111 111234788888888877 4555
Q ss_pred HhhhhhhHhHHHHHHHHhHhhhh
Q 012087 296 KAGDAMFSSMEQLQRKADNIGSM 318 (471)
Q Consensus 296 ~vg~~~s~~m~~Lq~~a~~I~~~ 318 (471)
.+.|.|+.+...+-++..|.-.+
T Consensus 417 r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 417 RQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555555444333
No 192
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=25.03 E-value=4e+02 Score=22.10 Aligned_cols=7 Identities=43% Similarity=0.890 Sum_probs=2.6
Q ss_pred HhhHHHH
Q 012087 274 SNLGKEV 280 (471)
Q Consensus 274 ~~lg~~~ 280 (471)
..+|+.+
T Consensus 78 ~~~g~~v 84 (90)
T PF06103_consen 78 ADLGESV 84 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 193
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=24.82 E-value=9e+02 Score=26.09 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=7.5
Q ss_pred HHHHHHhHHHHHHHHH
Q 012087 171 VNELKKSADYTEHKLE 186 (471)
Q Consensus 171 VnkL~~sS~~a~e~Le 186 (471)
+++|..++..+.+.++
T Consensus 248 v~~l~~~~~~~a~~~~ 263 (370)
T PLN03094 248 VAKMYALAERAADLME 263 (370)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555544444433333
No 194
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=24.80 E-value=3.5e+02 Score=22.78 Aligned_cols=33 Identities=33% Similarity=0.260 Sum_probs=17.2
Q ss_pred hhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012087 330 LHGQSTALESLQLLTKFQSEALAESRNTLQELA 362 (471)
Q Consensus 330 L~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~ 362 (471)
|++|+..+..++.=|.-+...|..|+.-|..+-
T Consensus 31 L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 31 LEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444445555555555554443
No 195
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=24.73 E-value=7.1e+02 Score=24.83 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 266 MATLIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 266 ~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
...+.+.|+.+-++.++++++..++.++|..-.
T Consensus 32 LD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~ 64 (212)
T COG3599 32 LDDVIDDYEQLLDENEDLEDEIDELKEELKEAA 64 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555555555443
No 196
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.70 E-value=1e+03 Score=26.68 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 012087 392 SILAAQEAFESKQASMFIALDKLFA 416 (471)
Q Consensus 392 ~~l~aqe~f~~kq~~if~~ld~l~~ 416 (471)
.+++.=++++.+|..++..|+.|..
T Consensus 383 ~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 383 EIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677889999988888764
No 197
>PF03342 Rhabdo_M1: Rhabdovirus M1 matrix protein (M1 polymerase-associated protein); InterPro: IPR005010 This is a family of phosphoproteins of unknown function expressed by Rhadovirus.
Probab=24.42 E-value=3.3e+02 Score=27.14 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHH
Q 012087 359 QELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIAL 411 (471)
Q Consensus 359 q~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~l 411 (471)
|++.+.-+.+|+||-+-=|..-.=|. -|-++++++|.+-+.+=.+|..+|
T Consensus 80 qlir~ik~sHQeelT~HLEkv~~EnR---Anl~al~eSQ~E~~K~tk~ILs~l 129 (219)
T PF03342_consen 80 QLIRQIKMSHQEELTQHLEKVATENR---ANLQALTESQQEHEKVTKEILSAL 129 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH---HhHHHHHHHHHHhcchHHHHHHHH
Confidence 55788888999999887777777676 667788998888887777777664
No 198
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=24.39 E-value=6.7e+02 Score=24.47 Aligned_cols=18 Identities=28% Similarity=0.169 Sum_probs=12.0
Q ss_pred HHHH--HHHHHHHHHHHHHH
Q 012087 346 FQSE--ALAESRNTLQELAE 363 (471)
Q Consensus 346 ~q~~--aleesr~tiq~~~~ 363 (471)
.|.. |||++-+.-+.+..
T Consensus 51 L~aRV~alE~~l~dq~ll~~ 70 (204)
T PF00517_consen 51 LQARVLALERYLKDQQLLNI 70 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-SB
T ss_pred hhhhHHHHHHHhhhHHHHHh
Confidence 5666 88888777666653
No 199
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.30 E-value=1.1e+03 Score=26.86 Aligned_cols=150 Identities=13% Similarity=0.154 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHh-----------------HhHHHHHHH
Q 012087 167 TERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTA-----------------KGVRDLMDI 229 (471)
Q Consensus 167 TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~ts-----------------k~v~~~i~d 229 (471)
.+..|++|...-..+.+.|.........+++..+.+.+-...++.+++-+..=. ..|.+..=+
T Consensus 50 ~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~ 129 (618)
T PF06419_consen 50 LQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFD 129 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHH
Confidence 356788999999999999999999999999999888777776666655542110 011111114
Q ss_pred HHHhHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012087 230 LSRHSEVVYNQSKEIAAS--QTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQ 307 (471)
Q Consensus 230 l~~~s~~i~e~~keIa~s--q~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~ 307 (471)
++.+-+.|++--+-+-.. |.-..+..++|...++.|..++ |+.+..+-..+..+.-++..-+++-=..|.++..-
T Consensus 130 ~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl---~~w~q~e~~~l~~~~~~~~~~l~~al~~L~~rp~l 206 (618)
T PF06419_consen 130 ALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERL---YRWVQRECRSLNLDNPEVSPLLRRALRYLRERPVL 206 (618)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhcCcccchHHHHHHHHHhcChHH
Confidence 444455555444442221 1222344555555555554333 33334444444333333333343333455666666
Q ss_pred HHHHHhHhhhhh
Q 012087 308 LQRKADNIGSMA 319 (471)
Q Consensus 308 Lq~~a~~I~~~~ 319 (471)
++...|++.+.=
T Consensus 207 f~~~l~~~~~~R 218 (618)
T PF06419_consen 207 FNYCLDEFAEAR 218 (618)
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 200
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=24.18 E-value=1.3e+03 Score=27.73 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHHHHHHHhHhHHH-HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHH----HH
Q 012087 211 HRVQNVAQTAKGVRD-LMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNL----RD 285 (471)
Q Consensus 211 ~q~~~La~tsk~v~~-~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l----~~ 285 (471)
.+.+++..|-|-|.+ +||++..|.+.|..-.++|+- +..+|..++|.-.+|...==++ ..
T Consensus 244 ~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p---------------~~~~v~~vndla~ql~~~d~~ls~~~~~ 308 (966)
T KOG4286|consen 244 RQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAP---------------LKENVSHVNDLARQLTTLDIQLSPYNLS 308 (966)
T ss_pred hHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcch---------------HhhchhhHHHHHHHhhhcccCCChhhHh
Confidence 456666666666655 456666666655544444432 3344555566555554321111 12
Q ss_pred HHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhc
Q 012087 286 EAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAG 320 (471)
Q Consensus 286 ~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~ 320 (471)
.-.+|-.|-+.+.-+.-.++-.|+.+++|.|....
T Consensus 309 ~le~~n~rwk~Lq~SV~~rl~qlrna~~dfgp~sq 343 (966)
T KOG4286|consen 309 TLEDLNTRWKLLQVSVPDRLTQLRNAHRDFGPISQ 343 (966)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 23445566666666666677778889988887653
No 201
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=24.17 E-value=1.2e+03 Score=27.49 Aligned_cols=55 Identities=27% Similarity=0.275 Sum_probs=40.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchH
Q 012087 337 LESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSR 391 (471)
Q Consensus 337 ~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~ 391 (471)
|+.+|....-++.-+++...||+.|-+.-...|..+-..-+++...-..|-+.|.
T Consensus 337 ~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~ 391 (786)
T PF05483_consen 337 MEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILTMELQKKSS 391 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhH
Confidence 6777777777777888888888888887777777777777777766666655443
No 202
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.14 E-value=4.1e+02 Score=21.92 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=10.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
-.+.|.+.+++|.+.|....+.-++
T Consensus 32 ~L~~L~~kt~~L~~~a~~F~k~a~~ 56 (89)
T PF00957_consen 32 KLEELEDKTEELSDNAKQFKKNAKK 56 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444444444444444333333
No 203
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=24.03 E-value=33 Score=25.28 Aligned_cols=36 Identities=25% Similarity=0.509 Sum_probs=29.6
Q ss_pred CCCchHHHHHHHHhccchhhhccHhHHHHHHHHhhccch
Q 012087 74 GSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQ 112 (471)
Q Consensus 74 ~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNCfl 112 (471)
++..|-.+|..-| ..+..+ +++.+.||--||.+|--
T Consensus 6 Gy~~C~~Ev~~fL-~~~~~~--~~~~~~rLl~HL~~~~~ 41 (43)
T PF07527_consen 6 GYSECLNEVSRFL-SSVEGV--DPGVRARLLSHLQSCLN 41 (43)
T ss_dssp HHHHHHHHHHHHH-HHTS-----THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hcCCCC--ChHHHHHHHHHHHHHhc
Confidence 5789999999999 999988 89999999999998854
No 204
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=23.98 E-value=6.7e+02 Score=24.32 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=38.8
Q ss_pred hhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 012087 297 AGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQ 368 (471)
Q Consensus 297 vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~ 368 (471)
-|+.+-..++++++...+|+... ..|+--++++ .+.+=+++=+..++|+-.|.+.-+.+
T Consensus 79 ~~~~l~d~inE~t~k~~El~~~i-------~el~~~~~Ks------~~~~l~q~~~~~eEtv~~~ieqqk~~ 137 (165)
T PF09602_consen 79 TGNSLNDSINEWTDKLNELSAKI-------QELLLSPSKS------SFSLLSQISKQYEETVKQLIEQQKLT 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHcchHHH------HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35666667778999999998877 4455556666 34444445566777777777664433
No 205
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=23.93 E-value=5.2e+02 Score=23.06 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHH
Q 012087 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDH 211 (471)
Q Consensus 166 ~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~ 211 (471)
.+|.=|..|-++-...-++|..+++++.....-..++..+|+++..
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 6788888888888888889999888776655544444445554433
No 206
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=23.50 E-value=8.9e+02 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=21.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh---hhhhHhHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKAG---DAMFSSMEQLQR 310 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg---~~~s~~m~~Lq~ 310 (471)
-+....+.+-.-+++-...+.+|-..|+.+. .+++.-|..|++
T Consensus 68 ~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~Lkr 113 (383)
T PF04100_consen 68 ELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKR 113 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555566666666655 344444444443
No 207
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=23.20 E-value=6.6e+02 Score=23.92 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Q 012087 294 ISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELL 373 (471)
Q Consensus 294 i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell 373 (471)
-+.-.|..|..+..|+.+.......++.=+..=+...+-+.. .+.+.-+.-++..+...-+.+|.++|
T Consensus 61 srVKa~~~S~~~~~L~~As~~V~~At~~LV~av~~~~~~~~~------------~~~~d~s~ls~~~~k~~eMe~Qv~iL 128 (152)
T PF01608_consen 61 SRVKADPNSKTQDRLEQASKAVKKATENLVAAVKAAIEQEEE------------QEEVDFSKLSLHQAKRQEMEAQVRIL 128 (152)
T ss_dssp HCTTS-TTSCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH------------HHH----------HHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hcccchhhhcHHHHHHHHHHHHHHHH
Confidence 334447778888888877655554443222211111111100 01122222233334444578999999
Q ss_pred HHHHHHHHHHHhhh
Q 012087 374 KRQEQLQEVHDHLF 387 (471)
Q Consensus 374 ~~Qe~~~~~h~~l~ 387 (471)
+...+|+..+.+|-
T Consensus 129 ~lE~eLe~ar~kL~ 142 (152)
T PF01608_consen 129 KLEKELEKARKKLA 142 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999884
No 208
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=23.17 E-value=1.5e+03 Score=28.08 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHH
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRK 311 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~ 311 (471)
|.++..++...+.. ..++++.......+|+-+++-.+.|.+...-++.|= .+|..+++.|-.+
T Consensus 497 L~~r~~elsrl~a~-~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~EN----a~LlkqI~~Lk~t 559 (1195)
T KOG4643|consen 497 LNNRDLELSRLHAL-KNELKEQYKTCDIQYELLSNKLEELEELLGNLEEEN----AHLLKQIQSLKTT 559 (1195)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHH
Confidence 55555555544442 344444444555555555555555544433333332 3455555555544
No 209
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.90 E-value=1.1e+03 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=18.5
Q ss_pred HHHHhccchhhhccHhHHHHHHHHhhccchhhcCCCCC
Q 012087 83 YRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAF 120 (471)
Q Consensus 83 l~~L~~~C~~L~~~de~qSrLAl~LtNCfle~SGR~~f 120 (471)
+..+++-|+..-.-++.-. .+.-|+++.-+|-+.
T Consensus 173 ~nef~tlc~~~~~~~~~t~----~l~l~~l~~~k~i~v 206 (439)
T KOG2911|consen 173 LNEFQTLCSNLGKPDEETK----DLVLCWLAYQKHIIV 206 (439)
T ss_pred HHHHHHHhccCCCCcHHHH----HHHHHHHHhhhheee
Confidence 4566677776322222222 455677777777543
No 210
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=5.9e+02 Score=23.16 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012087 279 EVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 279 ~~e~l~~~~~~i~~~i~~ 296 (471)
+|+.++...-.+++++.+
T Consensus 84 ~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 84 EMDELTERVDALERQVAD 101 (108)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 445555555555555554
No 211
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=22.45 E-value=6.2e+02 Score=25.53 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhh
Q 012087 258 IKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317 (471)
Q Consensus 258 m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~ 317 (471)
+-..+|+|+..++++-++|.-...-+.+.+..+.--=.++.+-.++|-..+|+.+|.|-+
T Consensus 113 likvlddgi~kl~~aq~sl~~ssqsfn~asgkl~aldsql~ndf~eks~yfq~qvdkirk 172 (299)
T PF06109_consen 113 LIKVLDDGIIKLNKAQQSLHVSSQSFNNASGKLIALDSQLTNDFSEKSSYFQSQVDKIRK 172 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhcchhhHHHHHHHHHhhhhhhhcccccceeeehhhhhcchhHHHHHHHHHHHHHHH
Confidence 345689999999999999998888888777666555566778889999999999999865
No 212
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.32 E-value=1.1e+03 Score=26.11 Aligned_cols=23 Identities=0% Similarity=0.199 Sum_probs=9.9
Q ss_pred hhhhHHHHHHHHHHHhHhHHHHH
Q 012087 205 SLDSIDHRVQNVAQTAKGVRDLM 227 (471)
Q Consensus 205 sL~si~~q~~~La~tsk~v~~~i 227 (471)
....++.+...+......+.+++
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444
No 213
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=22.01 E-value=1.4e+03 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhHhhhhhccc
Q 012087 292 KEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (471)
Q Consensus 292 ~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~S 322 (471)
+|++..-|.+..-+.+||....+++.++.-+
T Consensus 370 qr~~~~ed~lk~l~~eLqkks~eleEmtk~k 400 (786)
T PF05483_consen 370 QRLKKNEDQLKILTMELQKKSSELEEMTKQK 400 (786)
T ss_pred HHHHHhHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4555666777777778888888887766433
No 214
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.99 E-value=1.5e+03 Score=27.61 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 167 TERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 167 TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
++..+..|+..-....-.++.+.+.+....+
T Consensus 331 ~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~ 361 (980)
T KOG0980|consen 331 RELQIEQLSREVAQLKAQLENLKEEARRRIE 361 (980)
T ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 215
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=21.91 E-value=9e+02 Score=25.03 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhch
Q 012087 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQ 333 (471)
Q Consensus 254 ~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ 333 (471)
++..+++.+++..+.+..-+..|.+..+.+.. +-.++....+.|..++..|+..+++|++.=..=|+.-++-|.-+
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~----~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~ 221 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDE----LLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQ 221 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHH
Confidence 44555666666666667777777666555543 44556666667778888899988888776666666655555555
Q ss_pred HHHHHh
Q 012087 334 STALES 339 (471)
Q Consensus 334 ~~a~~~ 339 (471)
...+..
T Consensus 222 ~~~i~~ 227 (325)
T PF08317_consen 222 KEEIEA 227 (325)
T ss_pred HHHHHH
Confidence 554443
No 216
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=21.85 E-value=1.7e+02 Score=28.02 Aligned_cols=59 Identities=8% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh---hhhhHhHHHHHHHHhHhhhh
Q 012087 260 EKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAG---DAMFSSMEQLQRKADNIGSM 318 (471)
Q Consensus 260 ~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg---~~~s~~m~~Lq~~a~~I~~~ 318 (471)
..|++-..++.......++++.-.+++...|+++|+.+- +-.|++++.+-+....+.+.
T Consensus 54 ~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~ 115 (157)
T COG3352 54 TDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG 115 (157)
T ss_pred HHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH
Confidence 345555556666666667777777777777777776654 55666666666655544443
No 217
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.58 E-value=8.5e+02 Score=24.64 Aligned_cols=129 Identities=14% Similarity=0.184 Sum_probs=58.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQ 347 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q 347 (471)
++..+|..+-.++|++.+.=..+...|.. +..++..+...+ .+.-++-++.+++=.++ .+.+ .-+
T Consensus 64 t~~~~~~~~~~e~e~~a~~H~~la~~L~~----~~~~l~~~~~~~-------~k~rK~~ke~~~~~~~~---~~~~-~~~ 128 (269)
T cd07673 64 TFAPVWDVFKTSTEKLANCHLELVRKLQE----LIKEVQKYGEEQ-------VKSHKKTKEEVAGTLEA---VQNI-QSI 128 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-------HHHHHhHHHHHhhHHHH---HHHH-HHH
Confidence 57777877777777776643333333322 112222222111 11222211112222222 2222 223
Q ss_pred HHHHHHHHHHHHHHHHHhH------HhHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHhhhHHHHHHH
Q 012087 348 SEALAESRNTLQELAEYGH------KQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIAL 411 (471)
Q Consensus 348 ~~aleesr~tiq~~~~~~~------~~qeell~~Qe~~~~~h~~l~~~s~~~l~aqe~f~~kq~~if~~l 411 (471)
.+++++|++.-.....-.. ..++++-.-+.+++.+.+..-..-...-..|..|+.+-..+|..+
T Consensus 129 ~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 129 TQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777776665442211 134555555555555555432222233336667777666666544
No 218
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.57 E-value=1.1e+03 Score=26.46 Aligned_cols=106 Identities=8% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH--HHHHhHHHHHHhHHHHHHHH
Q 012087 171 VNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD--ILSRHSEVVYNQSKEIAASQ 248 (471)
Q Consensus 171 VnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~--dl~~~s~~i~e~~keIa~sq 248 (471)
+.+|.+......++++.+- +-+-.+.+..+|.+++.-..++..+..++...+. +...-..++.+..+++....
T Consensus 415 l~~l~~~~~~il~kin~lp-----le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l 489 (547)
T PRK10807 415 LAQIQQKLMEALDKINNLP-----LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSM 489 (547)
T ss_pred HHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---HHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHH
Q 012087 249 TE---LQEGQVRIKEKLDEGMATLIDAYSNLGKEVNN 282 (471)
Q Consensus 249 ~e---l~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~ 282 (471)
.. -+..+.+|++.+++ +++..++.+.|.+..+.
T Consensus 490 ~~~~~~s~~~~~l~~tl~~-l~~~~r~lr~l~~~L~~ 525 (547)
T PRK10807 490 QGFQPGSPAYNKMVADMQR-LDQVLRELQPVLKTLNE 525 (547)
T ss_pred hhcCCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
No 219
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=21.51 E-value=2.4e+02 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=13.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
...+.+.+.+.++.+...|++++++.
T Consensus 165 ~~~~~~~k~i~~l~~kl~DlEnrsRR 190 (370)
T PF02994_consen 165 QAIKELEKRIKKLEDKLDDLENRSRR 190 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33334445555555555666666554
No 220
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.49 E-value=6.5e+02 Score=23.26 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=2.9
Q ss_pred hHHHHHHH
Q 012087 276 LGKEVNNL 283 (471)
Q Consensus 276 lg~~~e~l 283 (471)
|....++|
T Consensus 96 L~e~~ekl 103 (143)
T PF12718_consen 96 LKETTEKL 103 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 221
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=9.9e+02 Score=25.32 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHhHhhchHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhch
Q 012087 324 DKQQQLLHGQSTALESLQLLTKFQS--EALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNS 390 (471)
Q Consensus 324 enQ~~LL~gQ~~a~~~l~~l~~~q~--~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s 390 (471)
+-|+.||+.+ ..=.|+ ++++-..-||.+|-..++ |---..+-|+++-+=+|..+..+
T Consensus 209 qqQm~ll~es---------~~Y~Q~R~~~~q~IEstIsElG~IF~-QLA~mVseQ~E~i~RID~nv~ds 267 (311)
T KOG0812|consen 209 QQQMALLDES---------DEYVQERAKTMQNIESTISELGGIFQ-QLASMVSEQEETIQRIDDNVDDS 267 (311)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhh
Confidence 6677888766 111122 255555556666555432 22333444555555555554443
No 222
>PF13270 DUF4061: Domain of unknown function (DUF4061)
Probab=21.33 E-value=5.5e+02 Score=22.34 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHhHHHHH------HhHHHHHHHHHHHHHHHHHHHHH
Q 012087 221 KGVRDLMDILSRHSEVVY------NQSKEIAASQTELQEGQVRIKEK 261 (471)
Q Consensus 221 k~v~~~i~dl~~~s~~i~------e~~keIa~sq~el~~~q~~m~~k 261 (471)
+.+-..++|-+.|--..| |+..+|-.-|..|+..+-++...
T Consensus 9 ~~Ll~Ll~dF~sGkl~aFG~~cs~eqM~~IReqQE~LarlHfeL~~~ 55 (90)
T PF13270_consen 9 KGLLQLLEDFHSGKLQAFGKECSMEQMTKIREQQEKLARLHFELDSE 55 (90)
T ss_pred HHHHHHHHHHhhhHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566665544444 77777888888777777766443
No 223
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.04 E-value=1.3e+02 Score=26.87 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 012087 179 DYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (471)
Q Consensus 179 ~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~ 232 (471)
..-.+++..+......+...++++...|+-++.||..|...-..++..++++..
T Consensus 53 v~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~~ 106 (116)
T PF05064_consen 53 VENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLLS 106 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666666667777777777777777777777777765443
No 224
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.04 E-value=6.6e+02 Score=23.14 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=23.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHhhHHHHHHHH
Q 012087 235 EVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL---------IDAYSNLGKEVNNLR 284 (471)
Q Consensus 235 ~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~---------~e~y~~lg~~~e~l~ 284 (471)
.+-++..+.+++.-..--..+..|...+++..+.+ .+.|.+|.+.-+.+.
T Consensus 44 ~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 44 EARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 33444444433333333334444444444444433 566777666444443
No 225
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=20.74 E-value=5.1e+02 Score=26.62 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.6
Q ss_pred HhhHHHHHHHHH
Q 012087 274 SNLGKEVNNLRD 285 (471)
Q Consensus 274 ~~lg~~~e~l~~ 285 (471)
+.+.+++.+|++
T Consensus 51 ~~l~~~~~~L~~ 62 (304)
T PF02646_consen 51 QQLSQEASNLTS 62 (304)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 226
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.50 E-value=6.6e+02 Score=22.92 Aligned_cols=183 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHH-------HHHhHhhhhhccc
Q 012087 251 LQEGQVRIKEKLDEGMATL-IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQ-------RKADNIGSMAGDS 322 (471)
Q Consensus 251 l~~~q~~m~~kid~g~a~~-~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq-------~~a~~I~~~~~~S 322 (471)
.......+++++..+-.+. ++.|+.+.+..+.+......|.+.++...+++..-..... .-++.+.......
T Consensus 5 ~~R~~q~~~~k~g~~~~t~~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (229)
T PF03114_consen 5 INRAKQRVKQKLGKSEKTEIDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEF 84 (229)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccc
Q ss_pred hHHHH------hHhhchHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhch-----
Q 012087 323 LDKQQ------QLLHGQSTALESLQ-LLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNS----- 390 (471)
Q Consensus 323 lenQ~------~LL~gQ~~a~~~l~-~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s----- 390 (471)
-+.-. .+-.-....-.... ...++....++-.++.+ ....--.+.-+.+-.+--.+......+-+..
T Consensus 85 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~~ 163 (229)
T PF03114_consen 85 SDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKSK 163 (229)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSSB
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q ss_pred ---HHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 012087 391 ---RSILA-AQEAFESKQASMFIALDKLFALHNAMLL----ESRMIKAFFIY 434 (471)
Q Consensus 391 ---~~~l~-aqe~f~~kq~~if~~ld~l~~l~n~~l~----E~~~~k~f~~y 434 (471)
..-++ |++.|++.-..+-..|.+++.....++. .+...-.-||+
T Consensus 164 ~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~ 215 (229)
T PF03114_consen 164 SSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQ 215 (229)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 227
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=20.40 E-value=82 Score=31.73 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 012087 431 FFIYSLSIFIIYM 443 (471)
Q Consensus 431 f~~y~~~~~~iym 443 (471)
||+|+++.+++||
T Consensus 206 l~i~~~l~~~~Y~ 218 (268)
T PF09451_consen 206 LFIILFLFLAAYL 218 (268)
T ss_pred HHHHHHHHHHHHh
Confidence 3333333333333
No 228
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=20.39 E-value=1.2e+03 Score=25.87 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=15.0
Q ss_pred hHhHHHHHHHHhHhhhhhccchH
Q 012087 302 FSSMEQLQRKADNIGSMAGDSLD 324 (471)
Q Consensus 302 s~~m~~Lq~~a~~I~~~~~~Sle 324 (471)
-.-+.+||.+-|.|.+=.+.+++
T Consensus 250 ~~l~~~Lq~kLDrI~sWGqq~id 272 (440)
T PF03882_consen 250 DNLIFDLQMKLDRIISWGQQAID 272 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888775544443
No 229
>PRK03100 sec-independent translocase; Provisional
Probab=20.32 E-value=5.3e+02 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=18.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
++=+.-+.+|+.+.++|..+.++..+++.
T Consensus 25 rLP~~~r~lG~~vr~~R~~~~~~~~~~~~ 53 (136)
T PRK03100 25 RLPGAIRWTARALRQARDYASGATSQLRE 53 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777777766666666653
No 230
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.31 E-value=1.5e+03 Score=26.86 Aligned_cols=110 Identities=17% Similarity=0.262 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHHhHhhHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHH
Q 012087 136 IDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQN 215 (471)
Q Consensus 136 Mdd~af~vY~eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~ 215 (471)
-.+..|..|....+....-|=. ..+....+.+.|+++...-+-+.+-.+.+|+.=+.+-..+.+
T Consensus 88 ~~~~~y~~y~d~l~~~~~~c~~----------------il~q~~~~~~~l~sl~~k~~~vs~kt~~l~eace~l~~eq~k 151 (733)
T KOG2604|consen 88 ISRPKYRIYLDQLKKRIEECDA----------------ILDQTNNALDTLLSLQKKFEFVSQKTSALHEACEQLLEEQSK 151 (733)
T ss_pred hccchHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3667788888888888888862 233344455555555555555544444444444444455555
Q ss_pred HHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHH
Q 012087 216 VAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQT-----ELQEGQVRIKEKLDEGMATL 269 (471)
Q Consensus 216 La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~-----el~~~q~~m~~kid~g~a~~ 269 (471)
|.+-+.++..-+ ..|+..++|++--. --+.+...|..+||+.+.-|
T Consensus 152 l~elae~I~k~L--------~yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ci~~l 202 (733)
T KOG2604|consen 152 LSELAEGIRKKL--------HYFAELEELNRRLNHPTLSVGKVSFKEMLAKLDECIMFL 202 (733)
T ss_pred HHHHHHHHHHhh--------hhHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHH
Confidence 655555555544 46666666533221 22678888999999988755
No 231
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=20.24 E-value=9.4e+02 Score=26.01 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccch
Q 012087 283 LRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSL 323 (471)
Q Consensus 283 l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~Sl 323 (471)
++.++.+|.++|+.+-+.+-.--+.+...+..|.|....++
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~v 111 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSV 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccC
Confidence 33344444444444443333333444445555555555444
No 232
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=20.21 E-value=8.7e+02 Score=24.23 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=13.3
Q ss_pred hhchHHHHHhhHHHHHHHHHHHHHHHH
Q 012087 330 LHGQSTALESLQLLTKFQSEALAESRN 356 (471)
Q Consensus 330 L~gQ~~a~~~l~~l~~~q~~aleesr~ 356 (471)
-.|+.+|++.-|-|--.|.+=|-.-|.
T Consensus 175 A~G~lqA~Qa~Nql~a~q~~Ql~~L~~ 201 (246)
T TIGR02780 175 ASGQLQALQAGNQLAAQQSKQLQKLRA 201 (246)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444444444333
Done!