Query 012087
Match_columns 471
No_of_seqs 94 out of 96
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zx6_A HAMP, methyl-accepting 96.8 0.45 1.5E-05 47.4 31.8 35 271-305 181-215 (341)
2 2ch7_A Methyl-accepting chemot 95.7 1.5 5.1E-05 41.8 32.8 40 275-314 163-202 (309)
3 3g67_A Methyl-accepting chemot 95.3 2.1 7E-05 40.7 26.7 37 271-307 112-148 (213)
4 1qu7_A Methyl-accepting chemot 94.6 3.2 0.00011 39.3 27.7 180 167-367 12-193 (227)
5 3vkg_A Dynein heavy chain, cyt 92.0 31 0.0011 44.4 26.4 154 142-296 1895-2074(3245)
6 2ch7_A Methyl-accepting chemot 91.4 9.9 0.00034 36.1 34.5 26 292-317 166-191 (309)
7 1m1j_B Fibrinogen beta chain; 88.0 12 0.00042 39.5 15.8 17 297-313 176-192 (464)
8 3ghg_B Fibrinogen beta chain; 81.9 22 0.00077 37.6 14.2 98 211-314 88-188 (461)
9 3g67_A Methyl-accepting chemot 81.8 35 0.0012 32.2 28.9 54 264-317 112-165 (213)
10 2l7b_A Apolipoprotein E, APO-E 81.3 1.5 5E-05 43.9 5.0 140 244-391 116-256 (307)
11 3oja_B Anopheles plasmodium-re 81.0 43 0.0015 34.7 16.2 19 129-147 389-407 (597)
12 3euh_A Protein KICB, chromosom 80.4 60 0.0021 34.0 18.3 172 153-384 110-283 (440)
13 2dnx_A Syntaxin-12; snare, HAB 79.9 19 0.00067 31.2 11.1 56 270-325 13-73 (130)
14 3p8c_F ABL interactor 2; actin 78.4 41 0.0014 30.9 13.7 105 253-375 4-108 (159)
15 3r2p_A Apolipoprotein A-I; amp 78.1 40 0.0014 30.6 13.4 20 170-189 19-38 (185)
16 2dfs_A Myosin-5A; myosin-V, in 77.2 50 0.0017 38.1 16.4 17 322-338 1027-1043(1080)
17 4f7g_B Talin-1; alpha-helix bu 72.6 32 0.0011 33.0 11.3 147 123-284 30-187 (216)
18 3na7_A HP0958; flagellar bioge 68.5 82 0.0028 29.9 19.7 28 271-298 90-117 (256)
19 2dfs_A Myosin-5A; myosin-V, in 67.3 1.2E+02 0.0041 35.1 16.5 47 270-316 997-1043(1080)
20 3oja_B Anopheles plasmodium-re 66.8 99 0.0034 31.9 14.6 30 269-298 535-564 (597)
21 1deq_A Fibrinogen (alpha chain 66.8 84 0.0029 32.5 13.5 24 244-267 111-134 (390)
22 3ghg_C Fibrinogen gamma chain; 63.5 90 0.0031 32.5 13.2 38 211-248 31-68 (411)
23 3na7_A HP0958; flagellar bioge 61.2 1.1E+02 0.0039 28.9 20.4 25 283-307 95-119 (256)
24 2lem_A Apolipoprotein A-I; lip 60.4 1.1E+02 0.0037 28.5 12.5 21 169-189 16-36 (216)
25 2qih_A Protein USPA1; trimeric 59.8 1E+02 0.0035 27.9 16.3 65 311-401 73-145 (157)
26 1nfn_A Apolipoprotein E3; lipi 58.6 69 0.0024 29.5 10.4 14 300-313 147-160 (191)
27 1gs9_A Apolipoprotein E, APOE4 57.9 65 0.0022 29.2 9.9 63 244-312 97-159 (165)
28 3etw_A Adhesin A; antiparallel 56.3 1E+02 0.0035 26.9 13.1 69 225-296 16-93 (119)
29 3ghg_A Fibrinogen alpha chain; 55.6 1.1E+02 0.0038 33.0 12.5 20 250-269 114-133 (562)
30 2avr_X Adhesion A; antiparalle 54.7 1.1E+02 0.0038 26.8 12.9 59 235-296 26-93 (119)
31 3ghg_A Fibrinogen alpha chain; 54.1 2.2E+02 0.0076 30.7 14.4 16 119-134 32-47 (562)
32 1deq_A Fibrinogen (alpha chain 52.5 2E+02 0.0068 29.8 13.4 33 214-246 63-95 (390)
33 3c98_B Syntaxin-1A; protein co 51.4 1.4E+02 0.0049 27.1 14.3 15 350-364 213-227 (279)
34 1m1j_A Fibrinogen alpha subuni 47.6 2.8E+02 0.0097 29.5 15.0 24 244-267 109-132 (491)
35 2a01_A Apolipoprotein A-I; fou 44.3 2.1E+02 0.0072 27.0 12.1 19 255-273 145-163 (243)
36 1m1j_C Fibrinogen gamma chain; 41.0 3.2E+02 0.011 28.2 13.5 15 301-315 117-131 (409)
37 2a01_A Apolipoprotein A-I; fou 38.8 2.5E+02 0.0087 26.4 21.1 17 169-185 17-33 (243)
38 2kr6_A Presenilin-1; protease, 38.8 14 0.00046 34.5 2.1 15 456-470 122-136 (176)
39 3oja_A Leucine-rich immune mol 37.4 3.2E+02 0.011 27.6 12.3 47 340-386 426-472 (487)
40 4ioe_A Secreted protein ESXB; 37.1 1.4E+02 0.0048 22.9 8.7 32 268-299 53-84 (93)
41 3l39_A Putative PHOU-like phos 33.8 2.9E+02 0.0098 25.5 12.2 22 302-323 164-185 (227)
42 3r2p_A Apolipoprotein A-I; amp 33.1 2.7E+02 0.0093 25.0 10.0 12 300-311 152-163 (185)
43 1bf5_A Signal transducer and a 32.0 4.5E+02 0.016 28.5 12.8 106 271-382 2-111 (575)
44 1t3j_A Mitofusin 1; coiled coi 31.2 1.9E+02 0.0064 24.5 7.7 28 271-298 64-91 (96)
45 3ghg_B Fibrinogen beta chain; 30.1 5.2E+02 0.018 27.3 13.3 14 350-363 171-184 (461)
46 1aq5_A Matrilin-1, CMP, cartil 29.5 86 0.0029 23.4 4.7 28 162-189 16-43 (47)
47 4ioe_A Secreted protein ESXB; 29.3 1.9E+02 0.0066 22.1 10.8 15 213-227 18-32 (93)
48 3s84_A Apolipoprotein A-IV; fo 28.4 4.1E+02 0.014 25.7 23.6 19 255-273 123-141 (273)
49 3vkg_A Dynein heavy chain, cyt 27.8 1.2E+03 0.039 30.7 27.0 28 209-236 1943-1970(3245)
50 1gl2_D Syntaxin 8, vesicle tra 27.7 1.1E+02 0.0038 23.1 5.4 28 269-296 7-34 (65)
51 2v71_A Nuclear distribution pr 27.7 3.8E+02 0.013 25.0 18.4 55 176-233 24-78 (189)
52 3uul_A Utrophin; spectrin repe 26.3 2.4E+02 0.0082 22.2 11.2 30 236-265 37-66 (118)
53 2p22_C Protein SRN2; endosome, 25.6 4E+02 0.014 24.6 14.4 25 299-323 127-151 (192)
54 3cve_A Homer protein homolog 1 25.1 2.7E+02 0.0091 22.3 9.0 51 178-228 2-52 (72)
55 3t97_C Nuclear pore glycoprote 24.7 88 0.003 24.5 4.3 46 183-228 12-57 (64)
56 1deb_A APC protein, adenomatou 24.6 79 0.0027 24.0 3.8 41 272-316 4-44 (54)
57 1eq1_A Apolp-III, apolipophori 24.2 4E+02 0.014 24.1 10.1 102 173-280 42-152 (166)
58 2cqq_A RSGI RUH-037, DNAJ homo 24.0 1.9E+02 0.0065 22.7 6.2 56 61-123 15-71 (72)
59 2de0_X Alpha-(1,6)-fucosyltran 23.0 4.5E+02 0.016 27.8 10.8 38 254-294 49-87 (526)
60 1sfc_D Protein (SNAP-25B), pro 22.5 3E+02 0.01 22.0 7.6 35 269-304 27-61 (87)
61 3mq9_A Bone marrow stromal ant 21.6 6.1E+02 0.021 25.3 14.2 29 169-197 359-387 (471)
62 1n7s_D SNAP-25A; neuronal snar 21.4 2.7E+02 0.0091 21.0 7.3 27 270-296 9-35 (66)
63 3mq9_A Bone marrow stromal ant 21.3 6.2E+02 0.021 25.3 15.3 9 79-87 224-232 (471)
64 3gwk_C SAG1039, putative uncha 21.3 2.9E+02 0.0099 21.4 10.3 31 268-298 52-82 (98)
65 2nps_D Syntaxin-6; vesicle fus 21.3 1.4E+02 0.0048 23.7 5.1 27 270-296 18-44 (82)
66 3zbh_A ESXA; unknown function, 21.2 2.8E+02 0.0096 21.2 10.4 30 268-297 53-82 (99)
67 2g0u_A Type III secretion syst 21.2 45 0.0015 28.1 2.1 68 294-362 18-85 (92)
68 1m1j_A Fibrinogen alpha subuni 20.9 7.7E+02 0.026 26.2 14.6 36 211-246 58-93 (491)
69 3gwk_C SAG1039, putative uncha 20.4 3.1E+02 0.01 21.3 9.2 17 211-227 15-31 (98)
70 3zbh_A ESXA; unknown function, 20.1 3E+02 0.01 21.1 10.5 18 211-228 16-33 (99)
No 1
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=96.85 E-value=0.45 Score=47.36 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM 305 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m 305 (471)
+.|-.+..|+.+|.+.+.+-..+|...=+.+...+
T Consensus 181 rGFAVVAdEVRkLAe~t~~at~~I~~~i~~~~~~v 215 (341)
T 3zx6_A 181 RGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKV 215 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888877777777766444333333
No 2
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=95.72 E-value=1.5 Score=41.82 Aligned_cols=40 Identities=13% Similarity=0.251 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhH
Q 012087 275 NLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADN 314 (471)
Q Consensus 275 ~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~ 314 (471)
.+.+++.+|.+.+.+...+|..+-+.+..........+++
T Consensus 163 VVA~eIr~LA~~t~~~~~~i~~v~~~i~~~a~~~~~~~~~ 202 (309)
T 2ch7_A 163 VVADEIRKLAEESQQASENVRRVVNEIRSIAEDAGKVSSE 202 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555455544444333333333333333
No 3
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=95.30 E-value=2.1 Score=40.68 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=25.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQ 307 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~ 307 (471)
+.|-.+..++.+|.+.+.+..++|...-..+....+.
T Consensus 112 rGFaVVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~ 148 (213)
T 3g67_A 112 KGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQR 148 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887777777776644444443333
No 4
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=94.57 E-value=3.2 Score=39.28 Aligned_cols=180 Identities=10% Similarity=0.158 Sum_probs=97.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHH--H
Q 012087 167 TERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE--I 244 (471)
Q Consensus 167 TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~ke--I 244 (471)
+-..++.+..+...+.+......+......+...+..+.+..+......|.+.++.+..-+ .....|-+|+.- +
T Consensus 12 ~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~~i~----~~I~~IA~QTNLLAL 87 (227)
T 1qu7_A 12 TAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADII----SVIDGIAFQTNILAL 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3445666666666666666666665555555555555555444445555555444433333 233344444443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchH
Q 012087 245 AASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLD 324 (471)
Q Consensus 245 a~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~Sle 324 (471)
+++..-.+-| --=+.|-.+..|+.+|-+.+.+-..+|..+=+.+...+..-...+ ..++.+++
T Consensus 88 NAaIEAARAG-------------E~GrGFAVVA~EVRkLA~~t~~at~~I~~~i~~~~~~v~~~~~~~----~~~~~~~~ 150 (227)
T 1qu7_A 88 NAAVEAARAG-------------EQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLV----ESAGETMA 150 (227)
T ss_dssp HHHHHHHHTG-------------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTHHH
T ss_pred HHHHHHHhcC-------------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3333322211 114778888888888888887777777775544444433332222 23344444
Q ss_pred HHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012087 325 KQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHK 367 (471)
Q Consensus 325 nQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~ 367 (471)
.=..-.+.-...+..+..-.+-|....++....+..+.+....
T Consensus 151 ~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 151 EIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555666666666666666655443
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.96 E-value=31 Score=44.38 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=76.2
Q ss_pred HHHHHHHHhHhhHHHHHHhhhh--HHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHH
Q 012087 142 KIYLAFLLETNSICYQLQAHGF--QYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQT 219 (471)
Q Consensus 142 ~vY~eF~~ht~sIC~~Lq~e~F--q~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~t 219 (471)
..|++|...=..+.---+.+.= +.+-+.=+.||.+++..+.+.=..+.+.+-+|.+...+....|..+...++...+.
T Consensus 1895 ~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~ 1974 (3245)
T 3vkg_A 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIK 1974 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456655554444433333222 22335556777777777777666666776666666655555555554444333222
Q ss_pred hHhH-------HHHHHHHHHhHH-----------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 012087 220 AKGV-------RDLMDILSRHSE-----------------VVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSN 275 (471)
Q Consensus 220 sk~v-------~~~i~dl~~~s~-----------------~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~ 275 (471)
.+.+ ...-..+....+ .+.+...+.+..+.+|...+.++ ..+++.++.+.+.|+.
T Consensus 1975 k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L-~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 1975 QKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATI-TALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1111 111111111111 11122233344444444444433 4456666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 012087 276 LGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 276 lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.-.+.++|++++...+.++..
T Consensus 2054 ~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2054 LIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666555554
No 6
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=91.41 E-value=9.9 Score=36.06 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=10.9
Q ss_pred HHHHHhhhhhhHhHHHHHHHHhHhhh
Q 012087 292 KEISKAGDAMFSSMEQLQRKADNIGS 317 (471)
Q Consensus 292 ~~i~~vg~~~s~~m~~Lq~~a~~I~~ 317 (471)
.+|+++++.....-......+++|.+
T Consensus 166 ~eIr~LA~~t~~~~~~i~~v~~~i~~ 191 (309)
T 2ch7_A 166 DEIRKLAEESQQASENVRRVVNEIRS 191 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444433333333334444433
No 7
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.97 E-value=12 Score=39.48 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=9.1
Q ss_pred hhhhhhHhHHHHHHHHh
Q 012087 297 AGDAMFSSMEQLQRKAD 313 (471)
Q Consensus 297 vg~~~s~~m~~Lq~~a~ 313 (471)
+-+.+..|++.|.....
T Consensus 176 ~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455556666655543
No 8
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=81.87 E-value=22 Score=37.55 Aligned_cols=98 Identities=10% Similarity=0.122 Sum_probs=49.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHhhHHHHHHHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKE---KLDEGMATLIDAYSNLGKEVNNLRDEA 287 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~---kid~g~a~~~e~y~~lg~~~e~l~~~~ 287 (471)
+++..+......++..|+.|.+.+..+++..+.|.++... -|..... .+.+...|+++.+...-+.+..--..
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~---~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~- 163 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQK---RQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPT- 163 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH---HHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHH-
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc---ccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchh-
Confidence 4555555566666777777777777777777777766554 2333222 22223335555444433222111111
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHhH
Q 012087 288 IEIEKEISKAGDAMFSSMEQLQRKADN 314 (471)
Q Consensus 288 ~~i~~~i~~vg~~~s~~m~~Lq~~a~~ 314 (471)
=.+.+..+-+.+..||+.|......
T Consensus 164 --~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 164 --NLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123333445666677777665543
No 9
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=81.77 E-value=35 Score=32.15 Aligned_cols=54 Identities=19% Similarity=0.393 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhh
Q 012087 264 EGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317 (471)
Q Consensus 264 ~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~ 317 (471)
.|++.+-+.-+.|++...+.+.+..++..+|...-+.....|.......++++.
T Consensus 112 rGFaVVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 165 (213)
T 3g67_A 112 KGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGK 165 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777778888877776666655555555555555555555555544444443
No 10
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=81.35 E-value=1.5 Score=43.93 Aligned_cols=140 Identities=14% Similarity=0.138 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccc
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEV-NNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDS 322 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~-e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~S 322 (471)
+.+....+.-....|+.++...|.-+.....-.+++. ++++.++.++..++..+++.|-.++.. .++++-...+=.
T Consensus 116 lEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeLr~kl~~---~veelr~~L~Py 192 (307)
T 2l7b_A 116 MEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGAREGAER---GLSAIRERLGPL 192 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHH---HHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHhhhH
Confidence 5555555555555666666555555555555544444 455557777777777777554443321 222222222211
Q ss_pred hHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhchH
Q 012087 323 LDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSR 391 (471)
Q Consensus 323 lenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s~ 391 (471)
.+..+..+. +...+.+ .-|.+--...+|+-|..+.-++++.+..+++|-. +++.++++|-++..
T Consensus 193 ~e~~~~~~~-~v~~~k~-~~L~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~---q~ee~~~ql~~~ae 256 (307)
T 2l7b_A 193 VEQGRVRAA-TVGSLAG-QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKE---QVAEVRAKLEEQAQ 256 (307)
T ss_dssp CTTTTTHHH-HHHHHHC-CCCSSCSCCHHHHHHHHHHHHHHTCSCSSCCCCS---SCSSHHHHHHHHHH
T ss_pred HHHHHHHHh-hhhhhhh-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 111111111 1111111 1111111114667777777777664445444432 56666666666554
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.04 E-value=43 Score=34.66 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=9.1
Q ss_pred HhHhhhcCChHHHHHHHHH
Q 012087 129 MINCLKKIDDEEHKIYLAF 147 (471)
Q Consensus 129 i~~Ct~~Mdd~af~vY~eF 147 (471)
...|....+........++
T Consensus 389 ~~~cc~~~~~~~~~~~~~~ 407 (597)
T 3oja_B 389 HGLCCKESDKPYLDRLLQY 407 (597)
T ss_dssp TTEEEECCSSHHHHHHHHH
T ss_pred CCccccCCCccchhHHHHH
Confidence 4456555555444433333
No 12
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=80.43 E-value=60 Score=33.96 Aligned_cols=172 Identities=18% Similarity=0.261 Sum_probs=92.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHH
Q 012087 153 SICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSR 232 (471)
Q Consensus 153 sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~ 232 (471)
-+=||+++..|- ++++=-.|..-+.+..+.++..+++.++ .++-++|..-+ .-
T Consensus 110 i~dyy~rqrefs--~l~LS~qls~va~EL~~a~~Aaee~~~e----------------------~~W~~~V~~~L---ky 162 (440)
T 3euh_A 110 ITDYYIRQREFS--TLRLSMQLSIVAGELKRAADAAEEGGDE----------------------FHWHRNVYAPL---KY 162 (440)
T ss_dssp HHHHTTSCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHCCSH----------------------HHHHHTTHHHH---HH
T ss_pred hhHHHHhhHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCH----------------------HHHHHHhhhhc---cC
Confidence 456899999998 7777777777777776666666654222 23444444444 12
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 233 HSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 233 ~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
.-++|+ ..|--+|+-+-+-|..+|+.|-+ .++..|+.--..-++|-+++ +.-+.+||.+-
T Consensus 163 SVaeif---d~Idl~QR~mDeQQ~~vk~eIA~---LL~~dW~~AI~~Ce~LL~Et--------------s~tLRELqdtL 222 (440)
T 3euh_A 163 SVAEIF---DSIDLTQRLMDEQQQQVKDDIAQ---LLNKDWRAAISSCELLLSET--------------SGTLRELQDTL 222 (440)
T ss_dssp THHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGGHHHHHHHHHHH--------------HHHHHHHHHHH
T ss_pred cHHHHH---hhhhhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHH--------------HhHHHHHHHHH
Confidence 222333 23444444444555556555432 24444444333334443333 33444455454
Q ss_pred hHhhhhhccchHHHHhHhhchHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Q 012087 313 DNIGSMAGDSLDKQQQLLHGQSTALE--SLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHD 384 (471)
Q Consensus 313 ~~I~~~~~~SlenQ~~LL~gQ~~a~~--~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~ 384 (471)
+--|+ +-|++||.=|..++. ++..+.+ .+..--.-+-+++.+|+.-..-.... .+.+|+
T Consensus 223 ~aagD------~lq~qLl~IQ~~~~~~~~l~~vd~----l~~~Lq~kLDRI~sWGqqsidlWigY---drhVHk 283 (440)
T 3euh_A 223 EAAGD------KLQANLLRIQDATMTHDDLHFVDR----LVFDLQSKLDRIISWGQQSIDLWIGY---DRHVHK 283 (440)
T ss_dssp HHHHH------HHHHHHHHHHHHHTTSSSCGGGTT----THHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHhHH------HHHHHHHHHHHHHhcCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 44444 347777777776632 2323222 34444455677888888776655543 456666
No 13
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.86 E-value=19 Score=31.22 Aligned_cols=56 Identities=13% Similarity=0.292 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhh-----hhhhHhHHHHHHHHhHhhhhhccchHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAG-----DAMFSSMEQLQRKADNIGSMAGDSLDK 325 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg-----~~~s~~m~~Lq~~a~~I~~~~~~Slen 325 (471)
.+-.+.++..+-++..++..|++-+..+| ..+..++..+++.+.++.+.++..|++
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~ 73 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKE 73 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777777777777777 457777777777777777777776665
No 14
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=78.44 E-value=41 Score=30.87 Aligned_cols=105 Identities=19% Similarity=0.281 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhc
Q 012087 253 EGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHG 332 (471)
Q Consensus 253 ~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~g 332 (471)
+.|.-+.+.|-+|..-+.+.|.+|.+-++=-.+.-..-...=..+-++..=-.+.|-+.|..|++.+. |--+|||-
T Consensus 4 ~l~~l~~~eiP~~r~~L~~s~~nL~~vAdYCE~nY~qs~dK~~aleeTK~Ya~qsLaSVAyqIn~lA~----~ll~lLd~ 79 (159)
T 3p8c_F 4 ELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLASVAYLINTLAN----NVLQMLDI 79 (159)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 45566666777788888888888887666655544333333345557777778999999999999885 44455666
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Q 012087 333 QSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKR 375 (471)
Q Consensus 333 Q~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~ 375 (471)
|... ++.-...|..+.+....+.|....|
T Consensus 80 Q~~~--------------l~~mes~v~~l~Q~v~ih~EKvaRr 108 (159)
T 3p8c_F 80 QASQ--------------LRRMESSINHISQTVDIHKEKVARR 108 (159)
T ss_dssp HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 4444556667777777777666554
No 15
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=78.12 E-value=40 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 012087 170 LVNELKKSADYTEHKLEIIE 189 (471)
Q Consensus 170 tVnkL~~sS~~a~e~Le~l~ 189 (471)
-|++|..+|..+.+.|....
T Consensus 19 Y~~~l~~~a~~~ve~l~~se 38 (185)
T 3r2p_A 19 YVDVLKDSGRDYVSQFEGSA 38 (185)
T ss_dssp HTHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHcch
Confidence 46778888888888887754
No 16
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.19 E-value=50 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=9.4
Q ss_pred chHHHHhHhhchHHHHH
Q 012087 322 SLDKQQQLLHGQSTALE 338 (471)
Q Consensus 322 SlenQ~~LL~gQ~~a~~ 338 (471)
+|++.++.|..|...++
T Consensus 1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566666655544
No 17
>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A
Probab=72.63 E-value=32 Score=32.96 Aligned_cols=147 Identities=17% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCc-chHhHhhhcCChHHHHHHHHHHHhHhhHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHhhHh
Q 012087 123 CDQK-SAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQ 201 (471)
Q Consensus 123 C~~~-~si~~Ct~~Mdd~af~vY~eF~~ht~sIC~~Lq~e~Fq~~TE~tVnkL~~sS~~a~e~Le~l~e~q~~Lle~~~~ 201 (471)
|++. ..+..|++++|...+.++..-+..-..+ -.+.||++....+..|........ .......+.|=..+.+
T Consensus 30 Cd~AI~~in~~i~dLd~AsLaA~s~~L~~~~~~----s~~~~qeq~~~~~~eL~~~i~~l~---~AAk~~~e~LG~av~~ 102 (216)
T 4f7g_B 30 CETAIAALNSCLRDLDQASLAAVSQQLAPREGI----SQEALHTQMLTAVQEISHLIEPLA---SAARAEASQLGHKVSQ 102 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSS----CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc----cHHHHHHHHHHHHHHHHHhhhHHH---HhhhcCHHHHhHHHHH
Confidence 4442 2478888888888887776644432221 124556555555444444332222 1222233333333333
Q ss_pred hhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH------HH----HHHHHHHHHHhHHHHHH
Q 012087 202 IHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQ------EG----QVRIKEKLDEGMATLID 271 (471)
Q Consensus 202 ~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el~------~~----q~~m~~kid~g~a~~~e 271 (471)
+- .-.+.|..+++...+.+- -++.+.+++++.|.++++..++- .| =..++..++++...+.|
T Consensus 103 ~a-------~~~epLv~aa~gaAS~t~-ds~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~l~e 174 (216)
T 4f7g_B 103 MA-------QYFEPLTLAAVGAASKTL-SHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTE 174 (216)
T ss_dssp HH-------HTHHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred HH-------HHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHHHHH
Confidence 22 223556666665555442 14456678888888777777663 11 23445556666555555
Q ss_pred HHHhhHHHHHHHH
Q 012087 272 AYSNLGKEVNNLR 284 (471)
Q Consensus 272 ~y~~lg~~~e~l~ 284 (471)
+-..+-..+++..
T Consensus 175 ai~d~~~tl~~~a 187 (216)
T 4f7g_B 175 AVEDLTTTLNEAA 187 (216)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=68.48 E-value=82 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=13.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
+.|+.|.++++.++..-..++.+|..+.
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444444
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.29 E-value=1.2e+02 Score=35.06 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhh
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG 316 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~ 316 (471)
.+.|+.+.++.+.+.+.......+++.--.+|....+.|..+.|++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333334444444555555554
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.82 E-value=99 Score=31.95 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=14.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 269 LIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 269 ~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
..+.|+.+.++.+++.....+...++..+-
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 345555555555555554444444444333
No 21
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=66.78 E-value=84 Score=32.54 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMA 267 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a 267 (471)
+..-..+|...+.-++++|++.+.
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444555666666777766655
No 22
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.45 E-value=90 Score=32.51 Aligned_cols=38 Identities=13% Similarity=0.181 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQ 248 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq 248 (471)
+++..+......++..|+.|.+.+..+++..+.|.++.
T Consensus 31 kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 31 TYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 45555666666666666666666666666666666553
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.15 E-value=1.1e+02 Score=28.91 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhHHH
Q 012087 283 LRDEAIEIEKEISKAGDAMFSSMEQ 307 (471)
Q Consensus 283 l~~~~~~i~~~i~~vg~~~s~~m~~ 307 (471)
|..+-.....++...-+.+..-|..
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343333333333333
No 24
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=60.43 E-value=1.1e+02 Score=28.47 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 012087 169 RLVNELKKSADYTEHKLEIIE 189 (471)
Q Consensus 169 ~tVnkL~~sS~~a~e~Le~l~ 189 (471)
.-|++|..+|..+.+.|....
T Consensus 16 ~Y~~~l~~~a~~~v~~l~~se 36 (216)
T 2lem_A 16 VYVDAVKDSGRDYVSQFESSS 36 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 346788888888888888765
No 25
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=59.76 E-value=1e+02 Score=27.91 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=46.1
Q ss_pred HHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhhhhch
Q 012087 311 KADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNS 390 (471)
Q Consensus 311 ~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l~~~s 390 (471)
...+||+.-+.=.+||-.+++.|...-.+.+++|+ |++. |+|-..-.+-|.+||
T Consensus 73 ~~RdIgsL~ddVa~NqaDIakNqADIdNNinnIYE---------------LAQQ-----------QDQHSSDIKTLkKnS 126 (157)
T 2qih_A 73 VARAVGNNTQGVATNKADIAKNQADIANNIKNIYE---------------LAQQ-----------QDQHSSDIKTLAKVS 126 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH-----------HHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHHhhHHHHHHhHHHHHhhHHHHHH---------------HHHH-----------HHHhHHHHHHHHhcc
Confidence 34556666666678889999999888888888888 6663 667777778887776
Q ss_pred H--------HHHHHHHHHH
Q 012087 391 R--------SILAAQEAFE 401 (471)
Q Consensus 391 ~--------~~l~aqe~f~ 401 (471)
- ---++|.+|+
T Consensus 127 ~~NTdnI~knka~~~a~~~ 145 (157)
T 2qih_A 127 AANTDRIAKNKAEADASFE 145 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhhhhHHHHhHHH
Confidence 4 2234666665
No 26
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=58.56 E-value=69 Score=29.52 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=6.5
Q ss_pred hhhHhHHHHHHHHh
Q 012087 300 AMFSSMEQLQRKAD 313 (471)
Q Consensus 300 ~~s~~m~~Lq~~a~ 313 (471)
.+..+|+.|+.+..
T Consensus 147 kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 147 RLLRDADDLQKRLA 160 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhH
Confidence 33444555555443
No 27
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=57.93 E-value=65 Score=29.20 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKA 312 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a 312 (471)
....+..|....+.+|.++.-.+ .+--..++.-+|.+|+...-+..++++ .....|+.|+.+.
T Consensus 97 ~e~Lr~~L~~d~EelR~~l~p~~---~el~~~l~~~~EelR~kl~P~~eeL~~---~~~~~~eeLr~kL 159 (165)
T 1gs9_A 97 LQAAQARLGADMEDVRGRLVQYR---GEVQAMLGQSTEELRVRLASHLRKLRK---RLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHTSTTCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHh
Confidence 33333444444555555544442 222334677677777654444444433 4445556665544
No 28
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=56.35 E-value=1e+02 Score=26.94 Aligned_cols=69 Identities=14% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 012087 225 DLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL---------IDAYSNLGKEVNNLRDEAIEIEKEIS 295 (471)
Q Consensus 225 ~~i~dl~~~s~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~---------~e~y~~lg~~~e~l~~~~~~i~~~i~ 295 (471)
..++.|.+.-.+=|...+.++......-..+..|+.+|++-.+.| .+.|..+.+.-++++. +|..+|+
T Consensus 16 ae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~k---eLd~~ik 92 (119)
T 3etw_A 16 AEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALK---KLEAEME 92 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 333444444455566667777776666667788888888888876 5677777765555544 5555555
Q ss_pred H
Q 012087 296 K 296 (471)
Q Consensus 296 ~ 296 (471)
.
T Consensus 93 ~ 93 (119)
T 3etw_A 93 Q 93 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.60 E-value=1.1e+02 Score=32.96 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 012087 250 ELQEGQVRIKEKLDEGMATL 269 (471)
Q Consensus 250 el~~~q~~m~~kid~g~a~~ 269 (471)
+|.....-|+++|+..+..|
T Consensus 114 ELRRrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55556666777777666443
No 30
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=54.70 E-value=1.1e+02 Score=26.81 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 235 EVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATL---------IDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 235 ~~i~e~~keIa~sq~el~~~q~~m~~kid~g~a~~---------~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+-|.+.+.++.+-...-..+..|..+|++..+.| .+.|..|.+.=..+ -.+|..+|+.
T Consensus 26 ~qrynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~---~~~Ld~eI~~ 93 (119)
T 2avr_X 26 EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA---LKKLEAEMEQ 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 45577778888887777788889999999988876 66787777733333 3355555554
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.14 E-value=2.2e+02 Score=30.72 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=9.3
Q ss_pred CCCCCCCcchHhHhhh
Q 012087 119 AFPNCDQKSAMINCLK 134 (471)
Q Consensus 119 ~fp~C~~~~si~~Ct~ 134 (471)
.||-|.++.=-..|-.
T Consensus 32 ~WPfCaDeDwGvkCPS 47 (562)
T 3ghg_A 32 DWPFCSDEDWNYKCPS 47 (562)
T ss_dssp CCCBCCSSSBTTEEEC
T ss_pred CCCcccccccCCCCCc
Confidence 3666776654555654
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.53 E-value=2e+02 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHH
Q 012087 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAA 246 (471)
Q Consensus 214 ~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~ 246 (471)
+.+......+...|+++.+.+.+++...+.|.+
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~ 95 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVE 95 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334444444555555556666666655555444
No 33
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=51.41 E-value=1.4e+02 Score=27.07 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAEY 364 (471)
Q Consensus 350 aleesr~tiq~~~~~ 364 (471)
++++....|..+.+.
T Consensus 213 ~i~~I~~~i~ei~~~ 227 (279)
T 3c98_B 213 EIIKLENSIRELHDM 227 (279)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 34
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=47.65 E-value=2.8e+02 Score=29.45 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 012087 244 IAASQTELQEGQVRIKEKLDEGMA 267 (471)
Q Consensus 244 Ia~sq~el~~~q~~m~~kid~g~a 267 (471)
+..-..+|...+.-++++|+..+.
T Consensus 109 ~~e~S~eLe~ri~yIK~kVd~qi~ 132 (491)
T 1m1j_A 109 YGHVSTELRRRIVTLKQRVATQVN 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666677777777777753
No 35
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=44.29 E-value=2.1e+02 Score=26.99 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 012087 255 QVRIKEKLDEGMATLIDAY 273 (471)
Q Consensus 255 q~~m~~kid~g~a~~~e~y 273 (471)
-..|+.++...+..+.+..
T Consensus 145 ~eelr~kl~~~veelk~~l 163 (243)
T 2a01_A 145 GEEMRDRARAHVDALRTHL 163 (243)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433
No 36
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=40.98 E-value=3.2e+02 Score=28.22 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=6.5
Q ss_pred hhHhHHHHHHHHhHh
Q 012087 301 MFSSMEQLQRKADNI 315 (471)
Q Consensus 301 ~s~~m~~Lq~~a~~I 315 (471)
+..+++.|.....++
T Consensus 117 ~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 117 NSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 334444444444333
No 37
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=38.84 E-value=2.5e+02 Score=26.39 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=9.5
Q ss_pred HHHHHHHHhHHHHHHHH
Q 012087 169 RLVNELKKSADYTEHKL 185 (471)
Q Consensus 169 ~tVnkL~~sS~~a~e~L 185 (471)
..|+++..++..+.+.+
T Consensus 17 ~Y~~q~~~sa~~~~~~~ 33 (243)
T 2a01_A 17 VYVDVLKDSGRDYVSQF 33 (243)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34555666666555555
No 38
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=38.79 E-value=14 Score=34.54 Aligned_cols=15 Identities=47% Similarity=0.631 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhc
Q 012087 456 RLYIGKHMFLYLLAI 470 (471)
Q Consensus 456 ~ly~gl~~~~~~~~~ 470 (471)
-..+|||+||++|++
T Consensus 122 aIL~GL~~TL~lLa~ 136 (176)
T 2kr6_A 122 AILIGLCLTLLLLAI 136 (176)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 455677777777764
No 39
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.36 E-value=3.2e+02 Score=27.58 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHhh
Q 012087 340 LQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL 386 (471)
Q Consensus 340 l~~l~~~q~~aleesr~tiq~~~~~~~~~qeell~~Qe~~~~~h~~l 386 (471)
++...+-+.+-.++.++.++.+.+-..+..+++-+...+|..+.+.|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 33444434445667788888888888888888888888887777744
No 40
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=37.10 E-value=1.4e+02 Score=22.95 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=18.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKAGD 299 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~ 299 (471)
.+.+.|+.....+.++.+...+|...++..++
T Consensus 53 af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~ 84 (93)
T 4ioe_A 53 KFRGEFIQSKQAMQQYIPILEGISTDLKRIAD 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666566666555443
No 41
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=33.84 E-value=2.9e+02 Score=25.52 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHhHhhhhhccch
Q 012087 302 FSSMEQLQRKADNIGSMAGDSL 323 (471)
Q Consensus 302 s~~m~~Lq~~a~~I~~~~~~Sl 323 (471)
..+++.+-+.+|++-..+.+.|
T Consensus 164 ~~eI~~lE~eaD~l~~~~~~~L 185 (227)
T 3l39_A 164 CTQLHDIENQADDVYELFITKL 185 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557777777766554443
No 42
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=33.07 E-value=2.7e+02 Score=25.00 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=5.1
Q ss_pred hhhHhHHHHHHH
Q 012087 300 AMFSSMEQLQRK 311 (471)
Q Consensus 300 ~~s~~m~~Lq~~ 311 (471)
.+...+.+|+..
T Consensus 152 ~l~~~~e~lk~~ 163 (185)
T 3r2p_A 152 RARAHVDALRTH 163 (185)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 43
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=32.00 E-value=4.5e+02 Score=28.48 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhh---hhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAG---DAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQ 347 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg---~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q 347 (471)
+....+.+.++.|+..+.+++++|+.+- |...=+-++++....+-+......+..+++. +-+-++.|..-.
T Consensus 2 ~~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~l~~~R 75 (575)
T 1bf5_A 2 DKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLL------LKKMYLMLDNKR 75 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------CH------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhccccHHHHHHHHHH------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-hHHhHHHHHHHHHHHHHH
Q 012087 348 SEALAESRNTLQELAEY-GHKQQEELLKRQEQLQEV 382 (471)
Q Consensus 348 ~~aleesr~tiq~~~~~-~~~~qeell~~Qe~~~~~ 382 (471)
.+.+++..+++..+... ..--.+||.+|..+=+.+
T Consensus 76 ~~~~~~~~~~~~~~~~lq~~ll~~eL~~WkrrQq~a 111 (575)
T 1bf5_A 76 KEVVHKIIELLNVTELTQNALINDELVEWKRRQQSA 111 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
No 44
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.23 E-value=1.9e+02 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
..++.+...+..||+.+..|+.+++.-.
T Consensus 64 ~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 64 DQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4566777788888999988888887743
No 45
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.09 E-value=5.2e+02 Score=27.33 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 012087 350 ALAESRNTLQELAE 363 (471)
Q Consensus 350 aleesr~tiq~~~~ 363 (471)
.|++.+..||.|..
T Consensus 171 ~~~~~~~~i~~l~~ 184 (461)
T 3ghg_B 171 ILENLRSKIQKLES 184 (461)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555543
No 46
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=29.51 E-value=86 Score=23.40 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012087 162 GFQYETERLVNELKKSADYTEHKLEIIE 189 (471)
Q Consensus 162 ~Fq~~TE~tVnkL~~sS~~a~e~Le~l~ 189 (471)
.||..|+..|+.|...-..+..+|+.++
T Consensus 16 ~FQ~~v~~~l~~Lt~kL~~vt~rle~lE 43 (47)
T 1aq5_A 16 KFQTKVEELINTLQQKLEAVAKRIEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998877777777764
No 47
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=29.34 E-value=1.9e+02 Score=22.14 Aligned_cols=15 Identities=13% Similarity=0.167 Sum_probs=5.6
Q ss_pred HHHHHHHhHhHHHHH
Q 012087 213 VQNVAQTAKGVRDLM 227 (471)
Q Consensus 213 ~~~La~tsk~v~~~i 227 (471)
..++..++..+...+
T Consensus 18 A~~~~~~~~~i~~~l 32 (93)
T 4ioe_A 18 AGNFKNAAGEAQSQI 32 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 48
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=28.44 E-value=4.1e+02 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 012087 255 QVRIKEKLDEGMATLIDAY 273 (471)
Q Consensus 255 q~~m~~kid~g~a~~~e~y 273 (471)
.+.++.++...+..+.+..
T Consensus 123 ~eelr~k~~~~leeLr~~l 141 (273)
T 3s84_A 123 ADEFKVKIDQTVEELRRSL 141 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555544444443
No 49
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.82 E-value=1.2e+03 Score=30.68 Aligned_cols=28 Identities=0% Similarity=0.156 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHhHHH
Q 012087 209 IDHRVQNVAQTAKGVRDLMDILSRHSEV 236 (471)
Q Consensus 209 i~~q~~~La~tsk~v~~~i~dl~~~s~~ 236 (471)
+..++..|++.++.....+..|.+.+..
T Consensus 1943 L~~~~~~L~~k~~ea~~~l~~i~~~~~~ 1970 (3245)
T 3vkg_A 1943 LAQKNRELDVKNEQANQKLKQMVQDQQA 1970 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444444333
No 50
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.69 E-value=1.1e+02 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 269 LIDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 269 ~~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.++....|+..+..+++.+.+|-.||..
T Consensus 7 qD~~Ld~L~~~v~~lk~~a~~Ig~El~~ 34 (65)
T 1gl2_D 7 QDAGLDALSSIISRQKQMGQEIGNELDE 34 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3566677888888888888888888876
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.67 E-value=3.8e+02 Score=25.01 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHh
Q 012087 176 KSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRH 233 (471)
Q Consensus 176 ~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~ 233 (471)
.....+..-|+...+.+.+|-..... .|+..+++...|......+..-++.+...
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~---eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEA---QLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666654443 45555555555555555555555544433
No 52
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.30 E-value=2.4e+02 Score=22.23 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012087 236 VVYNQSKEIAASQTELQEGQVRIKEKLDEG 265 (471)
Q Consensus 236 ~i~e~~keIa~sq~el~~~q~~m~~kid~g 265 (471)
.+..+.++..+-+.++...+..+..-.+.|
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g 66 (118)
T 3uul_A 37 DVKEQFATHETFMMELSAHQSSVGSVLQAG 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333
No 53
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.61 E-value=4e+02 Score=24.64 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=15.9
Q ss_pred hhhhHhHHHHHHHHhHhhhhhccch
Q 012087 299 DAMFSSMEQLQRKADNIGSMAGDSL 323 (471)
Q Consensus 299 ~~~s~~m~~Lq~~a~~I~~~~~~Sl 323 (471)
+++..+|+..-..+|+-......+.
T Consensus 127 ~~L~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 127 IALKKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655555
No 54
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.05 E-value=2.7e+02 Score=22.33 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH
Q 012087 178 ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 178 S~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~ 228 (471)
++.+..+|+.+.....+|.+.+..+...|+.-...+.++....+++...+|
T Consensus 2 ~~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 2 SHNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788899999888888887777777777666667777666676666665
No 55
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=24.70 E-value=88 Score=24.48 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH
Q 012087 183 HKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 183 e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~ 228 (471)
+++..+......+...++++-..|+-++.||..|...-...+..++
T Consensus 12 ekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~ 57 (64)
T 3t97_C 12 EKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVK 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666777777777777777666666554
No 56
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.55 E-value=79 Score=24.03 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=30.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHhHhh
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG 316 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~~I~ 316 (471)
+|.+|..++|.|+-|-.-+.+|++..+..++ .|..-+.+|-
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~ls----kLE~ets~mK 44 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLT----KLETEASNMK 44 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH----HHHhhhhhHH
Confidence 5889999999999999999999988665443 3444444443
No 57
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=24.23 E-value=4e+02 Score=24.09 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=52.9
Q ss_pred HHHHhHHHHHHHHHHHHHhhHH-HHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 012087 173 ELKKSADYTEHKLEIIEEKSDT-LLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTEL 251 (471)
Q Consensus 173 kL~~sS~~a~e~Le~l~e~q~~-Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~sq~el 251 (471)
.|.++|..+..+|..+...-.. |...-.+ .=+.+++-.+||..|+..+...--||-+.-.++.+-. .++-|.-.
T Consensus 42 A~KdGsDsvLqqls~~s~slq~al~dangk---akeALEq~R~nlektAeeLRkaHPdVE~qA~~lrdkL--qaAVQ~t~ 116 (166)
T 1eq1_A 42 ALKDGSDSVLQQLSAFSSSLQGAISDANGK---AKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKL--QAAVQTTV 116 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSST---HHHHHHHHHHHHHHHHHGGGGCSHHHHHTCSSSHHHH--HHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH--HHHHHhhH
Confidence 4566777777776666543222 2222222 2234456677777777777666666655555555422 22333322
Q ss_pred HHHHHHHHHHHHHhHH--------HHHHHHHhhHHHH
Q 012087 252 QEGQVRIKEKLDEGMA--------TLIDAYSNLGKEV 280 (471)
Q Consensus 252 ~~~q~~m~~kid~g~a--------~~~e~y~~lg~~~ 280 (471)
.+. .++...+...|. .|.++|....+.+
T Consensus 117 qes-qkLaKeVasn~eetN~KLaPkiK~Ay~dF~K~a 152 (166)
T 1eq1_A 117 QES-QKLAKEVASNMEETNKKLAPKIKQAYDDFVKHA 152 (166)
T ss_dssp HHH-HHHHHHHHSCCCSSCGGGHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222 234334333332 6788888877733
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.02 E-value=1.9e+02 Score=22.69 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhcCCC-CchHHHHHHHHhccchhhhccHhHHHHHHHHhhccchhhcCCCCCCCC
Q 012087 61 GKQLVEDAKRRLIGS-NACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNC 123 (471)
Q Consensus 61 G~k~le~a~~kl~~~-~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNCfle~SGR~~fp~C 123 (471)
-.+++++|.++.|.. .+-|..+-..+. + +.++-+.+.-.. -.-....+|+-++|+|
T Consensus 15 E~k~fe~al~~~p~~t~~RW~~IA~~lg---R---t~~eV~~~y~~L-~~d~~~~~G~vp~P~~ 71 (72)
T 2cqq_A 15 DLSQLTRSMVKFPGGTPGRWEKIAHELG---R---SVTDVTTKAKQL-KDSVTCSPGMVSGPSS 71 (72)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHHT---S---CHHHHHHHHHHH-HHSCCCCSCCCSCSCC
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHhC---C---CHHHHHHHHHHH-HHhcCccCCCCCCCCC
Confidence 458899999987643 478999988883 2 234445544333 3335567999999966
No 59
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=23.00 E-value=4.5e+02 Score=27.77 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH-HHHHHHHHH
Q 012087 254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRD-EAIEIEKEI 294 (471)
Q Consensus 254 ~q~~m~~kid~g~a~~~e~y~~lg~~~e~l~~-~~~~i~~~i 294 (471)
.++.+|+.++.+ +.|-+..+.-+++|+++ ...++++.|
T Consensus 49 ~~e~~~~~~~~~---~~e~~~~~~~~~~~~~~~~~~~~~~~~ 87 (526)
T 2de0_X 49 DHEILRRRIENG---AKELWFFLQSELKKLKNLEGNELQRHA 87 (526)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHh---HHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 466777777777 45557777777777777 444444433
No 60
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.46 E-value=3e+02 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 012087 269 LIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSS 304 (471)
Q Consensus 269 ~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~ 304 (471)
.++.+..|+..+..|++.+.+|-.||.. .+.|...
T Consensus 27 qD~~Ld~Ls~~v~rLk~la~~ig~Eld~-Qn~~Ld~ 61 (87)
T 1sfc_D 27 MDENLEQVSGIIGNLRHMALDMGNEIDT-QNRQIDR 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3556677778888888888888888876 3333333
No 61
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.59 E-value=6.1e+02 Score=25.29 Aligned_cols=29 Identities=7% Similarity=0.018 Sum_probs=13.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 169 RLVNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 169 ~tVnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
..+.++........+.|+.+.+.-+++++
T Consensus 359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~ 387 (471)
T 3mq9_A 359 TAVINAASGRQTVDEALKDAQTRITAARD 387 (471)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 33444443333444455555544444443
No 62
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=21.37 E-value=2.7e+02 Score=20.98 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
.+....|+..+..|++.+.+|-.||..
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~ 35 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDT 35 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777888888888888888876
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=21.33 E-value=6.2e+02 Score=25.25 Aligned_cols=9 Identities=11% Similarity=-0.046 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 012087 79 WQNAYRHLF 87 (471)
Q Consensus 79 W~~Al~~L~ 87 (471)
|..+...+.
T Consensus 224 ~~~~~~~f~ 232 (471)
T 3mq9_A 224 YSIAEAAFN 232 (471)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444443
No 64
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=21.31 E-value=2.9e+02 Score=21.42 Aligned_cols=31 Identities=10% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKAG 298 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~vg 298 (471)
.+...|+.....++++.+.-.+|...+...+
T Consensus 52 aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a 82 (98)
T 3gwk_C 52 SFEAQFNELSPKITEFAQLLEDINQQLLKVA 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555433
No 65
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=21.27 E-value=1.4e+02 Score=23.70 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=20.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 012087 270 IDAYSNLGKEVNNLRDEAIEIEKEISK 296 (471)
Q Consensus 270 ~e~y~~lg~~~e~l~~~~~~i~~~i~~ 296 (471)
++....|+..+..|++.+.+|-.||+.
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~ 44 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEE 44 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344566777788888888888888876
No 66
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=21.23 E-value=2.8e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=14.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 012087 268 TLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297 (471)
Q Consensus 268 ~~~e~y~~lg~~~e~l~~~~~~i~~~i~~v 297 (471)
.+.+.|+.....++++.+.-.+|...+...
T Consensus 53 af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (99)
T 3zbh_A 53 AFIQQYQELRPSFEKMAVLLNEVGQQLHNS 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444444443
No 67
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=21.19 E-value=45 Score=28.11 Aligned_cols=68 Identities=13% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHhhhhhhHhHHHHHHHHhHhhhhhccchHHHHhHhhchHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 012087 294 ISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELA 362 (471)
Q Consensus 294 i~~vg~~~s~~m~~Lq~~a~~I~~~~~~SlenQ~~LL~gQ~~a~~~l~~l~~~q~~aleesr~tiq~~~ 362 (471)
|.+|++.+.....+++....+.-+.-....+|=-.|-+-|++. ..++-.+++||..++..+.+.|.+.
T Consensus 18 Ld~vs~~f~~~a~~~~~~l~~Al~~L~~~psNPa~LAe~Qa~l-seynl~RNaQSntiKa~KD~~qaI~ 85 (92)
T 2g0u_A 18 LTGIGRAFDDGVKDLNKQLQDAQANLTKNPSDPTALANYQMIM-SEYNLYRNAQSSAVKSMKDIDSSIL 85 (92)
T ss_dssp HHHHHGGGCTTTHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHHHHHHHHHHHHHTHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444444444444556666777777776 7788999999998887777766543
No 68
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.88 E-value=7.7e+02 Score=26.19 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHhHHHHHHhHHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAA 246 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i~dl~~~s~~i~e~~keIa~ 246 (471)
.|-+++......+...|+++.+.+.+++...+.|.+
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~ 93 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETIN 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 344445555555555666666666666666555544
No 69
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=20.35 E-value=3.1e+02 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=6.6
Q ss_pred HHHHHHHHHhHhHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLM 227 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i 227 (471)
....++..++.++...+
T Consensus 15 ~~A~~~~~~~~~i~~~l 31 (98)
T 3gwk_C 15 SSAQKYTAGSQQVTEVL 31 (98)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444433333333
No 70
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=20.07 E-value=3e+02 Score=21.08 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHhHHHHHH
Q 012087 211 HRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 211 ~q~~~La~tsk~v~~~i~ 228 (471)
.-...+...+..+...++
T Consensus 16 ~~A~~~~~~~~~i~~~l~ 33 (99)
T 3zbh_A 16 GVARQYNVESSNVTELIA 33 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
Done!