Query 012087
Match_columns 471
No_of_seqs 94 out of 96
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 21:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012087.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012087hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gs9a_ a.24.1.1 (A:) Apolipop 47.3 65 0.0047 25.8 10.9 37 274-313 103-139 (144)
2 d1owaa_ a.7.1.1 (A:) Spectrin 43.3 68 0.005 24.9 10.2 53 175-228 18-70 (156)
3 d2jm5a1 a.91.1.1 (A:3-134) Reg 36.3 35 0.0026 26.5 6.3 103 56-165 17-126 (132)
4 d1s35a2 a.7.1.1 (A:1169-1273) 24.5 1.2E+02 0.0086 21.9 9.8 22 262-283 77-98 (105)
5 d1bg1a1 a.47.1.1 (A:136-321) S 24.0 2E+02 0.015 24.4 9.9 40 271-310 4-46 (186)
6 d2elba1 a.238.1.1 (A:6-273) DC 22.9 2.1E+02 0.015 24.1 24.0 30 168-197 29-58 (268)
7 d1eq1a_ a.63.1.1 (A:) Apolipop 19.7 1.2E+02 0.0086 25.6 7.0 36 172-207 41-77 (166)
8 d1agre_ a.91.1.1 (E:) Regulato 17.8 41 0.003 26.1 3.3 63 56-125 17-81 (128)
9 d1owaa_ a.7.1.1 (A:) Spectrin 16.1 2.2E+02 0.016 21.6 9.1 12 269-280 31-42 (156)
10 d1eq1a_ a.63.1.1 (A:) Apolipop 16.1 2.9E+02 0.021 23.0 9.0 37 272-308 79-115 (166)
No 1
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=47.33 E-value=65 Score=25.76 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=19.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHh
Q 012087 274 SNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKAD 313 (471)
Q Consensus 274 ~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~Lq~~a~ 313 (471)
..+++.+|.++........+++ +.+...++.|+.+..
T Consensus 103 ~~~~~~~ee~r~~l~p~~eel~---~~l~~~~eel~~kL~ 139 (144)
T d1gs9a_ 103 AMLGQSTEELRVRLASHLRKLR---KRLLRDADDLQKRLA 139 (144)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 3455666666665544444443 355556666665543
No 2
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.27 E-value=68 Score=24.87 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHhHHHHHHHHHHHHHhhHHHHHhhHhhhhhhhhHHHHHHHHHHHhHhHHHHHH
Q 012087 175 KKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228 (471)
Q Consensus 175 ~~sS~~a~e~Le~l~e~q~~Lle~~~~~~dsL~si~~q~~~La~tsk~v~~~i~ 228 (471)
.+++..+.+++..+.+.=+.|.....+-+..|+... +...+....+.+..-|.
T Consensus 18 ~e~~~~i~~~~~~l~~rw~~L~~~~~~R~~~Le~~~-~~~~F~~~~~~l~~Wl~ 70 (156)
T d1owaa_ 18 LETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIM 70 (156)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSCH-HHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345666777888888888887776666555565433 23455555555555553
No 3
>d2jm5a1 a.91.1.1 (A:3-134) Regulator of G-protein signaling 18, RGS18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.32 E-value=35 Score=26.52 Aligned_cols=103 Identities=10% Similarity=0.019 Sum_probs=60.0
Q ss_pred cCChhhhHHHHHHHHh--cCCCCchHHHHHHHHhccchhhhccHhHHHHHHHHhhccchhhcCCCCCCCCCCc--chHhH
Q 012087 56 LHNEKGKQLVEDAKRR--LIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQK--SAMIN 131 (471)
Q Consensus 56 ~~d~rG~k~le~a~~k--l~~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNCfle~SGR~~fp~C~~~--~si~~ 131 (471)
++|+.|..++.+...+ -...-.||.. +..++.. .++..+...|..+.+.|+....-. .++++.. ..+.+
T Consensus 17 L~d~~~~~~F~~fl~~~~~~e~l~Fw~~-ve~~k~~-----~~~~~~~~~a~~Iy~~yi~~~s~~-~i~~~~~~~~~i~~ 89 (132)
T d2jm5a1 17 LSHRDGLEAFTRFLKTEFSEENIEFWIA-CEDFKKS-----KGPQQIHLKAKAIYEKFIQTDAPK-EVNLDFHTKEVITN 89 (132)
T ss_dssp HHSHHHHHHHHHHHHHTTCTTTHHHHHH-HHHHHTC-----CCHHHHHHHHHHHHHHTTCSSSSS-CCCCCHHHHHHHHH
T ss_pred HcChHHHHHHHHHHhHcCCHHHHHHHHH-HHHHHcc-----CCHHHHHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Confidence 5688899887776443 2345678954 4566542 256678889999999999875433 2234432 24556
Q ss_pred hhhcCChHHH-HHHHHHHHhHhhHHH--HHHhhhhHH
Q 012087 132 CLKKIDDEEH-KIYLAFLLETNSICY--QLQAHGFQY 165 (471)
Q Consensus 132 Ct~~Mdd~af-~vY~eF~~ht~sIC~--~Lq~e~Fq~ 165 (471)
+..+-++..| .+....+..-..-+| |+++..|.+
T Consensus 90 ~~~~~~~~~F~~aq~~V~~~l~~~~yp~Fl~S~~y~~ 126 (132)
T d2jm5a1 90 SITQPTLHSFDAAQSRVYQLMEQDSYTRFLKSDIYLD 126 (132)
T ss_dssp HTTSCCTTTTHHHHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhhhhhccCHHHHH
Confidence 6555555544 344444444434344 445544443
No 4
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.54 E-value=1.2e+02 Score=21.90 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHhhHHHHHHH
Q 012087 262 LDEGMATLIDAYSNLGKEVNNL 283 (471)
Q Consensus 262 id~g~a~~~e~y~~lg~~~e~l 283 (471)
|..-+..+.+.|..|-+-+++.
T Consensus 77 I~~~~~~l~~rw~~l~~~~~~r 98 (105)
T d1s35a2 77 IKEKVQLIEDRHRKNNEKAQEA 98 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555544443
No 5
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.02 E-value=2e+02 Score=24.37 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=24.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH---hhhhhhHhHHHHHH
Q 012087 271 DAYSNLGKEVNNLRDEAIEIEKEISK---AGDAMFSSMEQLQR 310 (471)
Q Consensus 271 e~y~~lg~~~e~l~~~~~~i~~~i~~---vg~~~s~~m~~Lq~ 310 (471)
+..+.+.+.++.++..+.++++.|+. ..|...-+...|+.
T Consensus 4 ~~q~ei~~~v~~l~~~~q~~e~~ik~Le~~Qe~f~f~yk~lq~ 46 (186)
T d1bg1a1 4 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKS 46 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666677777777777777774 33455445555543
No 6
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.94 E-value=2.1e+02 Score=24.13 Aligned_cols=30 Identities=7% Similarity=0.054 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHH
Q 012087 168 ERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197 (471)
Q Consensus 168 E~tVnkL~~sS~~a~e~Le~l~e~q~~Lle 197 (471)
|.-+++|........+.+..+...+..+.+
T Consensus 29 ~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~ 58 (268)
T d2elba1 29 SNYMNQLYQAMHRIYDAQNELSAATHLTSK 58 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555444444443
No 7
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=19.69 E-value=1.2e+02 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=19.1
Q ss_pred HHHHHhHHHHHHHHHHHHH-hhHHHHHhhHhhhhhhh
Q 012087 172 NELKKSADYTEHKLEIIEE-KSDTLLQSSNQIHDSLD 207 (471)
Q Consensus 172 nkL~~sS~~a~e~Le~l~e-~q~~Lle~~~~~~dsL~ 207 (471)
..+.+++..+.+.+....+ -+..+.++.++..|.++
T Consensus 41 ~a~ke~a~~v~e~~~~~~~~l~~~~~Ea~~~a~dav~ 77 (166)
T d1eq1a_ 41 KALKDGSDSVLQQLSAFSSSLQGAISDANGKAKEALE 77 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665555543 34455555555555444
No 8
>d1agre_ a.91.1.1 (E:) Regulator of G-protein signaling 4, RGS4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.82 E-value=41 Score=26.11 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=38.1
Q ss_pred cCChhhhHHHHHHHHh-cC-CCCchHHHHHHHHhccchhhhccHhHHHHHHHHhhccchhhcCCCCCCCCCC
Q 012087 56 LHNEKGKQLVEDAKRR-LI-GSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQ 125 (471)
Q Consensus 56 ~~d~rG~k~le~a~~k-l~-~~~~CW~~Al~~L~~~C~~L~~~de~qSrLAl~LtNCfle~SGR~~fp~C~~ 125 (471)
+.|+.|..++.+...+ .+ ..-.||..| ..++.. .++..+...|..+.+.|+..++-. .++++.
T Consensus 17 L~d~~~~~~F~~FL~~~~~~e~l~Fw~~v-e~~k~~-----~~~~~~~~~a~~Iy~~yi~~~s~~-~~~l~~ 81 (128)
T d1agre_ 17 INHECGLAAFKAFLKSEYSEENIDFWISC-EEYKKI-----KSPSKLSPKAKKIYNEFISVQATK-EVNLDS 81 (128)
T ss_dssp HHSHHHHHHHHHHHHHTTCTHHHHHHHHH-HHHHHC-----CCTTTHHHHHHHHHHHHTSTTCTT-CCCCCH
T ss_pred HCChHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhcc-----CCHHHHHHHHHHHHHHHhCCCCCc-ccCCCH
Confidence 4578898887776544 22 223566544 444421 245568888999999999764433 333543
No 9
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.11 E-value=2.2e+02 Score=21.63 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=4.9
Q ss_pred HHHHHHhhHHHH
Q 012087 269 LIDAYSNLGKEV 280 (471)
Q Consensus 269 ~~e~y~~lg~~~ 280 (471)
+.+.|..|..-+
T Consensus 31 l~~rw~~L~~~~ 42 (156)
T d1owaa_ 31 VLTRYQSFKERV 42 (156)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 10
>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId: 7130]}
Probab=16.06 E-value=2.9e+02 Score=22.98 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=18.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHH
Q 012087 272 AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQL 308 (471)
Q Consensus 272 ~y~~lg~~~e~l~~~~~~i~~~i~~vg~~~s~~m~~L 308 (471)
+-.++-+.++.++..+.+|..+...+.+.+....+.+
T Consensus 79 a~~nle~~Aeelrk~~e~ikq~a~d~~~~~~~~~~~~ 115 (166)
T d1eq1a_ 79 ARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTT 115 (166)
T ss_dssp HHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444444444444333
Done!