Query 012089
Match_columns 471
No_of_seqs 384 out of 2367
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 4.1E-62 8.8E-67 516.0 32.1 424 2-471 165-627 (1227)
2 KOG1028 Ca2+-dependent phospho 99.9 1.5E-25 3.2E-30 227.9 19.4 178 258-471 161-351 (421)
3 cd04016 C2_Tollip C2 domain pr 99.9 1.1E-21 2.4E-26 165.6 14.5 119 263-392 1-121 (121)
4 cd08682 C2_Rab11-FIP_classI C2 99.8 1.3E-20 2.8E-25 161.5 13.7 119 266-391 1-126 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.3E-20 7.1E-25 157.8 15.4 120 266-394 2-121 (121)
6 cd08681 C2_fungal_Inn1p-like C 99.8 1.7E-20 3.8E-25 158.8 12.7 117 264-392 1-118 (118)
7 cd08376 C2B_MCTP_PRT C2 domain 99.8 5.5E-20 1.2E-24 155.2 14.7 115 265-393 1-115 (116)
8 cd08375 C2_Intersectin C2 doma 99.8 6.6E-20 1.4E-24 158.8 15.2 122 258-392 9-135 (136)
9 cd08677 C2A_Synaptotagmin-13 C 99.8 2.4E-20 5.3E-25 155.1 10.9 107 258-367 8-117 (118)
10 cd04036 C2_cPLA2 C2 domain pre 99.8 9.6E-20 2.1E-24 154.4 14.8 116 266-392 2-117 (119)
11 cd08395 C2C_Munc13 C2 domain t 99.8 7.9E-20 1.7E-24 153.9 14.0 108 265-373 1-115 (120)
12 cd08379 C2D_MCTP_PRT_plant C2 99.8 8.7E-20 1.9E-24 155.1 13.8 116 265-388 1-125 (126)
13 KOG1030 Predicted Ca2+-depende 99.8 4.9E-20 1.1E-24 159.0 10.8 100 261-364 3-102 (168)
14 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.9E-19 4E-24 154.5 13.4 121 265-393 1-126 (127)
15 cd04044 C2A_Tricalbin-like C2 99.8 2.7E-19 5.9E-24 152.7 14.1 122 263-394 1-124 (124)
16 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.1E-19 6.7E-24 157.0 14.3 127 265-394 1-133 (150)
17 cd04024 C2A_Synaptotagmin-like 99.8 2.9E-19 6.4E-24 153.4 13.7 123 264-392 1-128 (128)
18 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 3.3E-19 7E-24 152.1 13.9 122 265-390 1-122 (123)
19 cd08678 C2_C21orf25-like C2 do 99.8 6.9E-19 1.5E-23 150.7 15.3 122 266-395 1-122 (126)
20 cd04028 C2B_RIM1alpha C2 domai 99.8 3.7E-19 8E-24 154.8 13.6 111 262-373 27-141 (146)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.2E-19 1.6E-23 149.3 14.6 119 266-392 2-121 (121)
22 cd08381 C2B_PI3K_class_II C2 d 99.8 2.5E-19 5.4E-24 152.4 11.4 105 263-368 12-121 (122)
23 cd08400 C2_Ras_p21A1 C2 domain 99.8 1.3E-18 2.7E-23 149.0 15.6 122 263-394 3-124 (126)
24 cd08391 C2A_C2C_Synaptotagmin_ 99.8 7.2E-19 1.6E-23 149.4 13.2 115 264-392 1-121 (121)
25 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.6E-19 1E-23 151.5 11.5 110 259-368 10-124 (125)
26 cd04046 C2_Calpain C2 domain p 99.8 2.2E-18 4.7E-23 147.6 15.6 123 262-394 1-123 (126)
27 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 1.9E-18 4.2E-23 149.4 14.2 123 265-393 1-133 (133)
28 cd04029 C2A_SLP-4_5 C2 domain 99.8 9.6E-19 2.1E-23 149.4 12.1 111 258-368 9-124 (125)
29 cd08387 C2A_Synaptotagmin-8 C2 99.8 1.2E-18 2.6E-23 148.9 11.9 112 258-369 10-123 (124)
30 cd04015 C2_plant_PLD C2 domain 99.8 5E-18 1.1E-22 150.8 15.6 123 263-393 6-158 (158)
31 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.2E-18 7E-23 145.3 13.6 113 266-392 2-119 (121)
32 cd08377 C2C_MCTP_PRT C2 domain 99.8 5.6E-18 1.2E-22 143.5 14.5 118 264-392 1-118 (119)
33 cd04010 C2B_RasA3 C2 domain se 99.8 3.4E-18 7.3E-23 149.6 13.3 124 265-390 1-147 (148)
34 cd04041 C2A_fungal C2 domain f 99.8 1.6E-18 3.4E-23 145.0 10.5 96 264-359 1-100 (111)
35 cd08388 C2A_Synaptotagmin-4-11 99.8 3.7E-18 8.1E-23 146.4 12.7 112 258-369 10-127 (128)
36 cd08385 C2A_Synaptotagmin-1-5- 99.8 3E-18 6.6E-23 146.3 12.2 110 259-368 11-122 (124)
37 cd08680 C2_Kibra C2 domain fou 99.8 1.9E-18 4.2E-23 146.7 10.5 110 258-367 8-123 (124)
38 cd04043 C2_Munc13_fungal C2 do 99.8 1.3E-17 2.8E-22 142.9 14.5 118 265-394 2-122 (126)
39 cd04014 C2_PKC_epsilon C2 doma 99.8 1.5E-17 3.3E-22 143.6 14.8 116 263-394 3-130 (132)
40 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.5E-17 3.2E-22 141.4 14.1 118 266-391 2-120 (121)
41 cd08392 C2A_SLP-3 C2 domain fi 99.8 6.4E-18 1.4E-22 144.7 11.9 111 258-368 9-127 (128)
42 cd08373 C2A_Ferlin C2 domain f 99.8 2.4E-17 5.3E-22 141.3 14.9 116 270-396 2-119 (127)
43 cd04017 C2D_Ferlin C2 domain f 99.8 2.2E-17 4.7E-22 143.2 14.7 120 265-395 2-134 (135)
44 cd08389 C2A_Synaptotagmin-14_1 99.8 9.2E-18 2E-22 143.2 11.8 111 258-369 10-123 (124)
45 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.3E-17 2.8E-22 142.6 12.5 112 258-369 10-124 (125)
46 cd04039 C2_PSD C2 domain prese 99.7 1E-17 2.2E-22 139.1 10.9 94 264-360 1-99 (108)
47 cd04032 C2_Perforin C2 domain 99.7 1.5E-17 3.3E-22 141.5 12.2 108 248-359 12-120 (127)
48 cd08382 C2_Smurf-like C2 domai 99.7 2.6E-17 5.7E-22 140.2 13.6 118 266-390 2-122 (123)
49 cd08685 C2_RGS-like C2 domain 99.7 9.1E-18 2E-22 142.0 9.6 106 262-368 10-119 (119)
50 cd04030 C2C_KIAA1228 C2 domain 99.7 2.7E-17 5.9E-22 141.0 12.2 110 259-368 11-126 (127)
51 cd08521 C2A_SLP C2 domain firs 99.7 1.8E-17 3.9E-22 141.2 10.9 111 258-368 8-123 (123)
52 cd08390 C2A_Synaptotagmin-15-1 99.7 4.1E-17 8.8E-22 139.1 12.9 112 258-369 8-122 (123)
53 cd04050 C2B_Synaptotagmin-like 99.7 3.2E-17 7E-22 135.7 11.2 99 265-369 1-101 (105)
54 cd04031 C2A_RIM1alpha C2 domai 99.7 4.7E-17 1E-21 139.1 11.8 109 259-368 11-124 (125)
55 cd08690 C2_Freud-1 C2 domain f 99.7 1.8E-16 4E-21 138.9 15.1 124 264-394 4-138 (155)
56 cd04040 C2D_Tricalbin-like C2 99.7 1.4E-16 3.1E-21 134.1 13.5 114 266-388 1-114 (115)
57 cd04027 C2B_Munc13 C2 domain s 99.7 1.6E-16 3.6E-21 136.1 14.0 115 265-390 2-127 (127)
58 cd08676 C2A_Munc13-like C2 dom 99.7 7.8E-17 1.7E-21 141.5 12.0 106 258-368 22-153 (153)
59 cd04051 C2_SRC2_like C2 domain 99.7 7.1E-17 1.5E-21 138.0 11.0 115 265-388 1-125 (125)
60 cd08406 C2B_Synaptotagmin-12 C 99.7 3.1E-17 6.7E-22 141.7 8.6 111 258-370 9-123 (136)
61 KOG2059 Ras GTPase-activating 99.7 4.3E-17 9.3E-22 166.3 11.0 169 264-471 5-182 (800)
62 cd08688 C2_KIAA0528-like C2 do 99.7 7.1E-17 1.5E-21 134.8 10.2 101 266-369 1-108 (110)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 9.2E-17 2E-21 143.2 11.2 110 259-368 22-136 (162)
64 cd04049 C2_putative_Elicitor-r 99.7 1E-16 2.2E-21 136.9 10.9 104 264-370 1-108 (124)
65 cd04037 C2E_Ferlin C2 domain f 99.7 1E-16 2.2E-21 136.8 10.5 120 265-394 1-120 (124)
66 cd08691 C2_NEDL1-like C2 domai 99.7 7.5E-16 1.6E-20 133.0 15.3 118 265-390 2-136 (137)
67 cd08407 C2B_Synaptotagmin-13 C 99.7 7.1E-17 1.5E-21 139.5 8.9 111 258-370 9-125 (138)
68 cd04038 C2_ArfGAP C2 domain pr 99.7 2.5E-16 5.4E-21 137.4 11.6 93 263-360 1-93 (145)
69 cd08384 C2B_Rabphilin_Doc2 C2 99.7 9E-17 1.9E-21 139.0 8.5 111 258-370 7-121 (133)
70 cd08394 C2A_Munc13 C2 domain f 99.7 3.6E-16 7.9E-21 131.4 11.6 99 264-371 2-102 (127)
71 cd04009 C2B_Munc13-like C2 dom 99.7 3.3E-16 7.3E-21 135.3 11.3 101 259-359 11-119 (133)
72 PLN03008 Phospholipase D delta 99.7 5.2E-16 1.1E-20 164.4 15.0 130 262-399 12-183 (868)
73 cd04045 C2C_Tricalbin-like C2 99.7 3.9E-16 8.4E-21 132.3 11.3 103 264-370 1-103 (120)
74 cd04018 C2C_Ferlin C2 domain t 99.7 4.7E-16 1E-20 136.3 11.8 93 265-360 1-108 (151)
75 cd08405 C2B_Synaptotagmin-7 C2 99.7 6.6E-16 1.4E-20 134.1 11.5 110 258-369 9-122 (136)
76 cd04048 C2A_Copine C2 domain f 99.7 6.4E-16 1.4E-20 131.1 11.0 100 270-369 6-113 (120)
77 cd08675 C2B_RasGAP C2 domain s 99.7 7.5E-16 1.6E-20 133.6 11.5 106 266-372 1-122 (137)
78 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.8E-16 3.9E-21 137.6 7.5 109 259-369 10-122 (136)
79 cd08408 C2B_Synaptotagmin-14_1 99.7 6.3E-16 1.4E-20 134.1 10.6 111 258-369 9-124 (138)
80 cd04035 C2A_Rabphilin_Doc2 C2 99.7 1.1E-15 2.5E-20 130.2 11.9 109 258-367 9-122 (123)
81 cd08692 C2B_Tac2-N C2 domain s 99.7 3.5E-16 7.5E-21 133.4 8.5 110 259-369 9-122 (135)
82 cd04021 C2_E3_ubiquitin_ligase 99.6 2.8E-15 6E-20 128.1 14.0 118 264-390 2-124 (125)
83 cd04052 C2B_Tricalbin-like C2 99.6 1.3E-15 2.9E-20 127.3 11.4 101 281-394 9-110 (111)
84 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.1E-16 6.8E-21 135.7 7.9 110 258-369 8-121 (134)
85 cd04011 C2B_Ferlin C2 domain s 99.6 1.5E-15 3.1E-20 127.1 11.6 98 264-368 4-108 (111)
86 cd08402 C2B_Synaptotagmin-1 C2 99.6 5.8E-16 1.3E-20 134.4 9.4 110 258-369 9-122 (136)
87 cd08410 C2B_Synaptotagmin-17 C 99.6 1.5E-15 3.4E-20 131.5 10.7 111 258-369 8-122 (135)
88 cd08409 C2B_Synaptotagmin-15 C 99.6 4.2E-16 9.2E-21 135.3 7.0 112 258-370 9-124 (137)
89 cd04013 C2_SynGAP_like C2 doma 99.6 9.2E-15 2E-19 126.9 15.0 126 262-395 9-141 (146)
90 cd08686 C2_ABR C2 domain in th 99.6 8.8E-15 1.9E-19 121.4 12.9 95 266-367 1-106 (118)
91 cd08383 C2A_RasGAP C2 domain ( 99.6 1.4E-14 3E-19 122.2 14.1 114 266-392 2-117 (117)
92 cd04026 C2_PKC_alpha_gamma C2 99.6 6.9E-15 1.5E-19 126.8 11.1 106 264-370 13-121 (131)
93 cd00275 C2_PLC_like C2 domain 99.6 2.7E-14 5.8E-19 122.5 14.7 119 265-392 3-127 (128)
94 cd00276 C2B_Synaptotagmin C2 d 99.6 1.7E-15 3.7E-20 131.0 6.8 110 259-370 9-122 (134)
95 cd04047 C2B_Copine C2 domain s 99.6 9.7E-15 2.1E-19 121.8 11.2 96 269-365 5-107 (110)
96 KOG0696 Serine/threonine prote 99.6 8.9E-16 1.9E-20 149.0 4.0 109 261-370 177-288 (683)
97 PF00168 C2: C2 domain; Inter 99.5 7.4E-14 1.6E-18 110.1 9.0 85 266-350 1-85 (85)
98 PLN03200 cellulose synthase-in 99.5 6.4E-14 1.4E-18 161.6 11.7 123 259-394 1975-2101(2102)
99 cd08374 C2F_Ferlin C2 domain s 99.4 3.4E-12 7.3E-17 108.9 11.2 95 266-360 2-125 (133)
100 KOG1011 Neurotransmitter relea 99.4 1.3E-12 2.9E-17 132.0 8.7 127 260-397 291-428 (1283)
101 KOG1013 Synaptic vesicle prote 99.3 4.9E-13 1.1E-17 126.3 3.0 181 259-471 88-286 (362)
102 smart00239 C2 Protein kinase C 99.3 1.4E-11 3E-16 99.7 10.7 96 265-360 1-96 (101)
103 COG5038 Ca2+-dependent lipid-b 99.3 1.3E-11 2.8E-16 133.4 9.9 129 259-395 1035-1163(1227)
104 cd00030 C2 C2 domain. The C2 d 99.3 4.6E-11 9.9E-16 96.3 10.7 99 266-366 1-100 (102)
105 KOG1028 Ca2+-dependent phospho 99.2 3E-11 6.6E-16 123.4 9.9 97 259-355 293-393 (421)
106 PF10296 DUF2404: Putative int 99.2 1.4E-10 3E-15 92.9 10.2 85 78-163 1-89 (91)
107 PLN02223 phosphoinositide phos 99.2 3.2E-10 7E-15 116.3 14.4 98 263-360 408-512 (537)
108 cd08677 C2A_Synaptotagmin-13 C 99.1 1.9E-10 4E-15 95.9 7.6 56 384-471 1-63 (118)
109 PLN02270 phospholipase D alpha 99.1 7E-10 1.5E-14 118.4 13.9 129 263-399 7-154 (808)
110 PLN02952 phosphoinositide phos 99.1 1.1E-09 2.4E-14 114.7 14.4 104 263-369 469-580 (599)
111 KOG1328 Synaptic vesicle prote 99.0 7.4E-11 1.6E-15 121.1 2.1 133 259-397 109-305 (1103)
112 PLN02230 phosphoinositide phos 99.0 4.7E-09 1E-13 109.9 13.6 99 263-361 468-574 (598)
113 KOG0169 Phosphoinositide-speci 99.0 4.4E-09 9.5E-14 110.2 11.9 121 265-393 617-744 (746)
114 cd08407 C2B_Synaptotagmin-13 C 99.0 1.6E-09 3.5E-14 93.7 7.0 57 383-471 1-70 (138)
115 cd08406 C2B_Synaptotagmin-12 C 98.9 1.8E-09 3.9E-14 93.3 6.8 57 383-471 1-68 (136)
116 PLN02222 phosphoinositide phos 98.9 1.3E-08 2.8E-13 106.5 14.1 99 263-361 451-557 (581)
117 PLN02228 Phosphoinositide phos 98.9 1.3E-08 2.8E-13 106.2 14.0 123 264-394 431-562 (567)
118 KOG1328 Synaptic vesicle prote 98.9 5.3E-10 1.1E-14 115.0 3.2 100 259-358 942-1049(1103)
119 cd04029 C2A_SLP-4_5 C2 domain 98.9 3.6E-09 7.7E-14 90.3 7.7 57 383-471 1-69 (125)
120 cd08393 C2A_SLP-1_2 C2 domain 98.9 4.3E-09 9.3E-14 89.8 7.4 57 383-471 1-69 (125)
121 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.9 6.7E-09 1.5E-13 92.6 8.4 69 383-471 1-80 (162)
122 cd08689 C2_fungal_Pkc1p C2 dom 98.9 8.2E-09 1.8E-13 83.0 7.3 86 266-359 1-89 (109)
123 cd08392 C2A_SLP-3 C2 domain fi 98.9 7.6E-09 1.7E-13 88.5 7.7 57 383-471 1-69 (128)
124 cd04028 C2B_RIM1alpha C2 domai 98.8 1.3E-08 2.8E-13 88.7 7.8 58 380-471 14-83 (146)
125 cd08381 C2B_PI3K_class_II C2 d 98.8 1.3E-08 2.8E-13 86.4 7.6 44 428-471 12-65 (122)
126 cd08388 C2A_Synaptotagmin-4-11 98.8 1.5E-08 3.2E-13 86.9 7.9 57 383-471 2-68 (128)
127 cd04030 C2C_KIAA1228 C2 domain 98.8 1.6E-08 3.6E-13 86.3 7.9 58 382-471 1-69 (127)
128 cd04031 C2A_RIM1alpha C2 domai 98.8 2E-08 4.3E-13 85.5 7.8 57 383-471 2-69 (125)
129 cd08409 C2B_Synaptotagmin-15 C 98.8 1.8E-08 4E-13 87.3 7.1 57 383-471 1-67 (137)
130 cd08410 C2B_Synaptotagmin-17 C 98.7 2.3E-08 5E-13 86.5 6.9 56 384-471 1-67 (135)
131 cd08387 C2A_Synaptotagmin-8 C2 98.7 3E-08 6.4E-13 84.4 7.5 57 383-471 2-67 (124)
132 cd08685 C2_RGS-like C2 domain 98.7 3.5E-08 7.7E-13 83.3 7.6 44 428-471 11-64 (119)
133 cd08385 C2A_Synaptotagmin-1-5- 98.7 3.5E-08 7.5E-13 84.0 7.3 57 383-471 2-67 (124)
134 KOG1264 Phospholipase C [Lipid 98.7 5E-08 1.1E-12 101.9 9.6 126 264-398 1065-1194(1267)
135 cd08386 C2A_Synaptotagmin-7 C2 98.7 4.1E-08 8.9E-13 83.6 7.5 57 383-471 2-67 (125)
136 cd08692 C2B_Tac2-N C2 domain s 98.7 3.2E-08 6.9E-13 84.6 6.2 55 385-471 2-68 (135)
137 KOG2059 Ras GTPase-activating 98.7 3.4E-08 7.3E-13 102.1 7.4 124 270-394 137-277 (800)
138 cd08680 C2_Kibra C2 domain fou 98.7 5.5E-08 1.2E-12 82.6 7.3 45 427-471 12-68 (124)
139 KOG1031 Predicted Ca2+-depende 98.7 5.4E-08 1.2E-12 98.1 8.0 122 264-395 3-138 (1169)
140 cd08402 C2B_Synaptotagmin-1 C2 98.7 6E-08 1.3E-12 84.0 7.3 57 383-471 1-68 (136)
141 cd08404 C2B_Synaptotagmin-4 C2 98.6 8.4E-08 1.8E-12 83.1 7.8 57 383-471 1-68 (136)
142 cd08405 C2B_Synaptotagmin-7 C2 98.6 7.4E-08 1.6E-12 83.4 7.5 57 383-471 1-68 (136)
143 cd08408 C2B_Synaptotagmin-14_1 98.6 5.7E-08 1.2E-12 84.3 6.3 56 384-471 2-69 (138)
144 cd04009 C2B_Munc13-like C2 dom 98.6 1E-07 2.3E-12 82.2 7.5 57 383-471 2-71 (133)
145 cd08521 C2A_SLP C2 domain firs 98.6 1.2E-07 2.7E-12 80.4 7.9 56 384-471 1-68 (123)
146 cd08389 C2A_Synaptotagmin-14_1 98.6 1.1E-07 2.4E-12 81.0 7.4 57 383-471 2-66 (124)
147 cd08403 C2B_Synaptotagmin-3-5- 98.6 1.2E-07 2.6E-12 81.9 7.5 56 384-471 1-67 (134)
148 PLN02352 phospholipase D epsil 98.6 4.3E-07 9.3E-12 97.1 12.6 122 262-399 8-136 (758)
149 cd04016 C2_Tollip C2 domain pr 98.5 1.2E-07 2.6E-12 80.1 5.8 43 429-471 2-50 (121)
150 cd04050 C2B_Synaptotagmin-like 98.5 1.3E-07 2.9E-12 77.9 5.7 42 430-471 1-48 (105)
151 cd08390 C2A_Synaptotagmin-15-1 98.5 2.4E-07 5.1E-12 78.6 7.4 56 384-471 1-66 (123)
152 cd04035 C2A_Rabphilin_Doc2 C2 98.5 3.1E-07 6.8E-12 78.0 7.8 57 383-471 1-68 (123)
153 cd00276 C2B_Synaptotagmin C2 d 98.5 2.4E-07 5.2E-12 79.8 7.1 56 384-471 1-67 (134)
154 cd04039 C2_PSD C2 domain prese 98.5 1.9E-07 4.2E-12 77.4 5.9 43 429-471 1-53 (108)
155 cd08384 C2B_Rabphilin_Doc2 C2 98.5 2.7E-07 5.7E-12 79.6 6.5 45 427-471 11-66 (133)
156 KOG1326 Membrane-associated pr 98.5 7.1E-08 1.5E-12 103.1 3.1 92 263-355 612-703 (1105)
157 cd08400 C2_Ras_p21A1 C2 domain 98.4 3.4E-07 7.4E-12 78.1 6.1 43 429-471 4-49 (126)
158 cd08379 C2D_MCTP_PRT_plant C2 98.4 2.5E-07 5.5E-12 78.7 5.2 42 430-471 1-51 (126)
159 cd08394 C2A_Munc13 C2 domain f 98.4 3.9E-07 8.5E-12 76.9 5.9 43 429-471 2-46 (127)
160 cd04032 C2_Perforin C2 domain 98.4 3.5E-07 7.6E-12 77.9 5.3 45 427-471 26-75 (127)
161 cd08681 C2_fungal_Inn1p-like C 98.4 3.8E-07 8.3E-12 76.8 5.2 43 429-471 1-50 (118)
162 cd08395 C2C_Munc13 C2 domain t 98.4 3.8E-07 8.3E-12 76.9 4.9 42 430-471 1-54 (120)
163 cd04011 C2B_Ferlin C2 domain s 98.4 5.4E-07 1.2E-11 75.1 5.5 43 428-471 3-48 (111)
164 cd08375 C2_Intersectin C2 doma 98.4 7.2E-07 1.6E-11 77.2 6.4 45 427-471 13-63 (136)
165 KOG0905 Phosphoinositide 3-kin 98.4 3.1E-07 6.6E-12 99.5 4.7 108 262-369 1522-1634(1639)
166 cd04041 C2A_fungal C2 domain f 98.3 6.2E-07 1.3E-11 74.7 5.2 43 429-471 1-53 (111)
167 cd08378 C2B_MCTP_PRT_plant C2 98.3 7.2E-07 1.6E-11 75.6 4.9 41 430-471 1-44 (121)
168 cd08376 C2B_MCTP_PRT C2 domain 98.3 8.5E-07 1.8E-11 74.4 5.3 42 430-471 1-48 (116)
169 cd04026 C2_PKC_alpha_gamma C2 98.3 2.3E-06 4.9E-11 73.5 7.4 43 429-471 13-66 (131)
170 cd08688 C2_KIAA0528-like C2 do 98.3 1.4E-06 3.1E-11 72.4 5.3 41 431-471 1-49 (110)
171 cd04046 C2_Calpain C2 domain p 98.2 1.9E-06 4.1E-11 73.6 6.0 44 428-471 2-51 (126)
172 cd08377 C2C_MCTP_PRT C2 domain 98.2 1.9E-06 4.2E-11 72.5 6.0 43 429-471 1-49 (119)
173 cd08391 C2A_C2C_Synaptotagmin_ 98.2 1.6E-06 3.5E-11 73.2 5.4 43 429-471 1-55 (121)
174 cd04024 C2A_Synaptotagmin-like 98.2 2E-06 4.2E-11 73.5 5.9 43 429-471 1-51 (128)
175 cd04025 C2B_RasA1_RasA4 C2 dom 98.2 1.9E-06 4.1E-11 73.1 5.5 42 430-471 1-48 (123)
176 KOG1013 Synaptic vesicle prote 98.2 1.6E-06 3.6E-11 82.6 5.3 95 258-352 227-325 (362)
177 cd04014 C2_PKC_epsilon C2 doma 98.2 4E-06 8.7E-11 72.1 6.2 45 427-471 2-63 (132)
178 cd04027 C2B_Munc13 C2 domain s 98.2 3.3E-06 7.2E-11 72.1 5.6 43 429-471 1-49 (127)
179 KOG1011 Neurotransmitter relea 98.1 9.2E-06 2E-10 83.4 9.4 121 263-390 1124-1251(1283)
180 cd04042 C2A_MCTP_PRT C2 domain 98.1 4.1E-06 8.9E-11 70.9 5.7 42 430-471 1-49 (121)
181 cd04045 C2C_Tricalbin-like C2 98.1 5.7E-06 1.2E-10 70.0 5.9 43 429-471 1-50 (120)
182 cd04054 C2A_Rasal1_RasA4 C2 do 98.1 5.3E-06 1.1E-10 70.2 5.7 41 431-471 2-49 (121)
183 cd08401 C2A_RasA2_RasA3 C2 dom 98.1 4.6E-06 9.9E-11 70.6 5.3 41 431-471 2-50 (121)
184 cd04036 C2_cPLA2 C2 domain pre 98.1 4.5E-06 9.7E-11 70.4 4.9 41 431-471 2-51 (119)
185 cd04049 C2_putative_Elicitor-r 98.1 5.7E-06 1.2E-10 70.3 5.5 43 429-471 1-50 (124)
186 cd04044 C2A_Tricalbin-like C2 98.1 5.7E-06 1.2E-10 70.1 5.3 43 429-471 2-53 (124)
187 cd08383 C2A_RasGAP C2 domain ( 98.1 6.7E-06 1.4E-10 69.0 5.5 40 431-471 2-45 (117)
188 KOG1327 Copine [Signal transdu 98.1 2.4E-05 5.2E-10 80.3 10.4 133 300-471 42-190 (529)
189 cd08382 C2_Smurf-like C2 domai 98.0 6.4E-06 1.4E-10 69.9 5.3 41 431-471 2-49 (123)
190 cd04037 C2E_Ferlin C2 domain f 97.9 1.2E-05 2.7E-10 68.3 5.1 42 430-471 1-50 (124)
191 cd08676 C2A_Munc13-like C2 dom 97.9 1.9E-05 4.2E-10 69.5 5.8 31 427-457 26-59 (153)
192 cd04051 C2_SRC2_like C2 domain 97.9 1.6E-05 3.4E-10 67.6 4.8 41 431-471 2-50 (125)
193 cd04043 C2_Munc13_fungal C2 do 97.9 2.3E-05 5E-10 66.7 5.9 42 430-471 2-52 (126)
194 cd08684 C2A_Tac2-N C2 domain f 97.8 1.4E-05 3.1E-10 61.7 3.0 91 267-359 2-95 (103)
195 PLN02964 phosphatidylserine de 97.8 2.4E-05 5.2E-10 83.4 5.7 93 258-360 48-141 (644)
196 KOG1327 Copine [Signal transdu 97.8 4.7E-05 1E-09 78.2 6.4 88 270-358 142-236 (529)
197 cd04040 C2D_Tricalbin-like C2 97.7 3.9E-05 8.6E-10 64.1 4.8 41 431-471 1-48 (115)
198 KOG0696 Serine/threonine prote 97.7 4.1E-05 8.8E-10 75.7 5.2 44 428-471 179-233 (683)
199 PF00168 C2: C2 domain; Inter 97.7 3.7E-05 8.1E-10 59.9 3.8 41 431-471 1-50 (85)
200 cd08683 C2_C2cd3 C2 domain fou 97.7 9.2E-05 2E-09 61.7 5.7 93 266-359 1-133 (143)
201 PLN03200 cellulose synthase-in 97.7 4.1E-05 8.8E-10 90.2 4.8 45 427-471 1978-2027(2102)
202 KOG3532 Predicted protein kina 97.6 0.00023 4.9E-09 73.9 9.3 225 61-295 81-358 (1051)
203 cd04021 C2_E3_ubiquitin_ligase 97.6 9.4E-05 2E-09 63.0 5.7 42 430-471 3-50 (125)
204 cd04013 C2_SynGAP_like C2 doma 97.5 0.00013 2.8E-09 63.6 5.3 43 427-471 9-55 (146)
205 cd04047 C2B_Copine C2 domain s 97.5 0.00015 3.3E-09 60.0 4.6 38 434-471 5-54 (110)
206 cd04048 C2A_Copine C2 domain f 97.4 0.00022 4.8E-09 60.1 4.7 37 435-471 6-55 (120)
207 cd00275 C2_PLC_like C2 domain 97.4 0.0003 6.6E-09 59.8 5.6 42 430-471 3-59 (128)
208 KOG2060 Rab3 effector RIM1 and 97.3 0.00015 3.3E-09 70.6 3.6 109 262-371 267-380 (405)
209 KOG1326 Membrane-associated pr 97.3 8.8E-05 1.9E-09 80.1 1.8 116 263-390 205-329 (1105)
210 cd08689 C2_fungal_Pkc1p C2 dom 97.3 0.00052 1.1E-08 55.5 5.2 41 431-471 1-48 (109)
211 cd08682 C2_Rab11-FIP_classI C2 97.1 0.0004 8.6E-09 59.1 3.1 28 444-471 17-47 (126)
212 cd04018 C2C_Ferlin C2 domain t 96.9 0.00082 1.8E-08 59.0 3.5 28 444-471 32-62 (151)
213 cd04022 C2A_MCTP_PRT_plant C2 96.9 0.001 2.2E-08 56.7 3.8 28 444-471 18-48 (127)
214 KOG3837 Uncharacterized conser 96.8 0.0012 2.6E-08 65.1 4.4 125 262-393 365-503 (523)
215 KOG0905 Phosphoinositide 3-kin 96.8 0.0013 2.8E-08 72.4 5.0 58 380-471 1509-1577(1639)
216 cd04052 C2B_Tricalbin-like C2 96.8 0.0013 2.9E-08 54.5 3.5 28 444-471 10-41 (111)
217 cd00030 C2 C2 domain. The C2 d 96.7 0.0029 6.3E-08 50.0 5.1 41 431-471 1-48 (102)
218 cd04017 C2D_Ferlin C2 domain f 96.6 0.0022 4.7E-08 55.3 4.1 29 443-471 18-49 (135)
219 smart00239 C2 Protein kinase C 96.5 0.0049 1.1E-07 48.9 5.3 41 431-471 2-51 (101)
220 cd04015 C2_plant_PLD C2 domain 96.5 0.0025 5.4E-08 56.5 3.5 29 443-471 54-86 (158)
221 PF10358 NT-C2: N-terminal C2 96.5 0.16 3.5E-06 43.9 14.9 124 262-397 5-139 (143)
222 cd08398 C2_PI3K_class_I_alpha 96.4 0.081 1.8E-06 46.8 12.9 89 264-356 8-106 (158)
223 PF12416 DUF3668: Cep120 prote 96.3 0.19 4.1E-06 50.0 15.7 121 266-396 2-135 (340)
224 PF15627 CEP76-C2: CEP76 C2 do 96.3 0.068 1.5E-06 46.7 11.1 127 262-395 7-152 (156)
225 cd08678 C2_C21orf25-like C2 do 96.2 0.0042 9.2E-08 52.7 3.4 29 443-471 14-47 (126)
226 cd08693 C2_PI3K_class_I_beta_d 95.6 0.077 1.7E-06 47.7 9.0 90 264-355 8-119 (173)
227 KOG1265 Phospholipase C [Lipid 95.6 0.022 4.8E-07 61.4 6.2 90 263-360 702-798 (1189)
228 cd04033 C2_NEDD4_NEDD4L C2 dom 95.6 0.018 3.9E-07 49.2 4.6 27 445-471 19-55 (133)
229 cd08380 C2_PI3K_like C2 domain 95.5 0.076 1.6E-06 46.9 8.6 91 265-356 9-107 (156)
230 KOG1452 Predicted Rho GTPase-a 95.3 0.039 8.5E-07 52.8 6.1 119 260-394 47-168 (442)
231 cd08686 C2_ABR C2 domain in th 94.8 0.028 6E-07 47.0 3.3 40 431-471 1-47 (118)
232 cd04012 C2A_PI3K_class_II C2 d 94.8 0.12 2.7E-06 46.3 7.7 93 264-356 8-119 (171)
233 cd08687 C2_PKN-like C2 domain 94.2 0.48 1E-05 37.3 8.5 86 283-392 7-92 (98)
234 cd08397 C2_PI3K_class_III C2 d 94.1 0.16 3.6E-06 44.9 6.9 74 283-356 28-107 (159)
235 PLN03008 Phospholipase D delta 94.1 0.039 8.5E-07 60.3 3.2 28 444-471 74-105 (868)
236 PF15625 CC2D2AN-C2: CC2D2A N- 93.8 1.1 2.4E-05 40.1 11.6 71 284-358 36-108 (168)
237 PF00792 PI3K_C2: Phosphoinosi 93.7 0.4 8.7E-06 41.6 8.4 64 293-356 12-85 (142)
238 cd08399 C2_PI3K_class_I_gamma 93.6 0.44 9.6E-06 42.9 8.7 73 265-338 11-88 (178)
239 KOG2060 Rab3 effector RIM1 and 93.0 0.15 3.3E-06 50.2 5.0 44 427-470 267-322 (405)
240 cd08695 C2_Dock-B C2 domains f 92.5 1.3 2.7E-05 40.3 9.9 56 299-354 53-112 (189)
241 PLN02223 phosphoinositide phos 91.3 0.32 6.8E-06 51.0 5.2 45 427-471 407-467 (537)
242 cd08694 C2_Dock-A C2 domains f 91.0 2.6 5.6E-05 38.4 10.2 56 299-354 53-114 (196)
243 PLN02952 phosphoinositide phos 89.2 0.68 1.5E-05 49.5 5.8 44 428-471 469-529 (599)
244 cd08697 C2_Dock-D C2 domains f 89.2 6.5 0.00014 35.6 11.3 107 238-355 3-123 (185)
245 smart00142 PI3K_C2 Phosphoinos 89.0 2.3 4.9E-05 34.4 7.6 73 266-338 13-91 (100)
246 PLN02222 phosphoinositide phos 87.3 0.97 2.1E-05 48.2 5.5 44 428-471 451-511 (581)
247 PF14429 DOCK-C2: C2 domain in 87.1 2.4 5.3E-05 38.4 7.4 57 299-355 59-120 (184)
248 PLN02230 phosphoinositide phos 87.1 0.96 2.1E-05 48.4 5.3 45 427-471 467-528 (598)
249 KOG1264 Phospholipase C [Lipid 86.2 0.98 2.1E-05 48.9 4.7 44 428-471 1064-1118(1267)
250 PLN02964 phosphatidylserine de 83.3 1.4 3E-05 47.7 4.4 41 427-471 52-96 (644)
251 PLN02228 Phosphoinositide phos 82.9 1.8 4E-05 46.0 5.1 43 428-470 430-489 (567)
252 cd08374 C2F_Ferlin C2 domain s 80.9 1.2 2.7E-05 38.1 2.4 29 443-471 21-57 (133)
253 cd08679 C2_DOCK180_related C2 74.8 9.6 0.00021 34.3 6.5 53 303-355 56-115 (178)
254 KOG1329 Phospholipase D1 [Lipi 74.5 8 0.00017 42.9 6.8 107 285-398 138-245 (887)
255 PF11618 DUF3250: Protein of u 74.4 17 0.00036 29.8 7.2 84 301-393 13-105 (107)
256 PF08693 SKG6: Transmembrane a 74.0 2.6 5.7E-05 27.8 1.9 14 22-35 26-39 (40)
257 cd08696 C2_Dock-C C2 domains f 73.5 11 0.00024 34.0 6.4 57 299-355 54-118 (179)
258 KOG4092 Mitochondrial F1F0-ATP 70.9 2.1 4.5E-05 33.7 1.0 55 49-103 26-80 (108)
259 PLN02270 phospholipase D alpha 66.5 5.8 0.00013 43.8 3.6 28 444-471 44-76 (808)
260 KOG2238 Uncharacterized conser 61.5 2.8 6.1E-05 45.5 0.2 91 72-163 334-428 (795)
261 KOG0169 Phosphoinositide-speci 61.2 10 0.00022 41.2 4.3 42 430-471 617-674 (746)
262 KOG0694 Serine/threonine prote 50.8 4 8.6E-05 43.8 -0.8 95 284-394 27-122 (694)
263 PTZ00447 apical membrane antig 48.0 2.1E+02 0.0046 28.5 10.4 111 263-391 57-171 (508)
264 cd08690 C2_Freud-1 C2 domain f 45.4 12 0.00026 32.9 1.5 14 458-471 41-57 (155)
265 PF10206 WRW: Mitochondrial F1 41.7 24 0.00052 28.7 2.5 43 51-93 28-70 (104)
266 PLN02352 phospholipase D epsil 41.1 22 0.00048 39.2 3.0 24 448-471 37-61 (758)
267 cd08691 C2_NEDL1-like C2 domai 40.7 15 0.00032 31.6 1.3 15 457-471 44-62 (137)
268 KOG0904 Phosphatidylinositol 3 36.7 1.5E+02 0.0032 33.4 8.1 71 264-337 343-421 (1076)
269 PF05545 FixQ: Cbb3-type cytoc 33.1 13 0.00028 25.7 -0.2 19 18-36 17-35 (49)
270 KOG4269 Rac GTPase-activating 32.0 27 0.00058 38.8 1.8 74 258-338 753-828 (1112)
271 PF05393 Hum_adeno_E3A: Human 31.9 16 0.00034 28.5 0.0 41 10-50 30-72 (94)
272 cd01324 cbb3_Oxidase_CcoQ Cyto 31.1 18 0.0004 24.9 0.3 18 20-37 20-37 (48)
273 KOG1265 Phospholipase C [Lipid 31.0 67 0.0015 35.9 4.5 44 427-471 701-755 (1189)
274 PF14356 DUF4403: Domain of un 30.6 3.3E+02 0.0071 28.2 9.5 58 177-244 309-366 (427)
275 KOG4027 Uncharacterized conser 27.8 4.3E+02 0.0092 23.3 8.2 42 313-354 65-109 (187)
276 PF06295 DUF1043: Protein of u 27.7 20 0.00043 30.4 -0.0 21 15-35 3-23 (128)
277 PF14991 MLANA: Protein melan- 24.4 27 0.00058 28.7 0.2 24 11-34 27-50 (118)
278 PRK00081 coaE dephospho-CoA ki 23.7 75 0.0016 28.8 3.0 37 50-97 65-101 (194)
279 PRK00523 hypothetical protein; 22.9 40 0.00087 25.4 0.8 20 11-30 8-27 (72)
280 cd05137 RasGAP_CLA2_BUD2 CLA2/ 22.6 1.2E+02 0.0027 31.0 4.6 44 345-394 1-45 (395)
281 COG3105 Uncharacterized protei 22.2 39 0.00085 28.4 0.7 15 15-29 12-26 (138)
282 PF04478 Mid2: Mid2 like cell 22.0 42 0.00091 29.3 0.9 10 27-36 69-78 (154)
283 PF07162 B9-C2: Ciliary basal 21.2 5.7E+02 0.012 22.5 10.6 94 269-370 7-116 (168)
284 PTZ00382 Variant-specific surf 20.6 59 0.0013 26.1 1.4 15 20-34 79-93 (96)
285 PF10409 PTEN_C2: C2 domain of 20.6 5E+02 0.011 21.6 10.5 90 265-357 5-98 (134)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=4.1e-62 Score=515.98 Aligned_cols=424 Identities=28% Similarity=0.510 Sum_probs=349.1
Q ss_pred cchhhhhhhhcccccchhHHHHHHhheeeeec----cCCcccccccccccccCCchhHhhhCCCCCCcccCCCCcchHHH
Q 012089 2 GFLSSVLGVLGFGFIGLPLGLLVGFFLFIYSK----PNDDQVEEPLVTPLCELDTIPLFDLLPEIPLWVKNPDYERVDWL 77 (471)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~~~d~E~~~Wl 77 (471)
|++||++|++||+++-+++.++. +.++|+ +.+|..|+...+.+.+ +++. .|+|++|||
T Consensus 165 ~v~Swifg~~~fs~~slffii~~---~~~vY~~~~~rv~rnird~v~~~~~~------ek~~---------nd~ESveWL 226 (1227)
T COG5038 165 SVASWIFGYLGFSFASLFFIILV---TMYVYRTCIKRVRRNIRDLVQQELSE------EKLE---------NDYESVEWL 226 (1227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH------Hhhh---------cchhHHHHH
Confidence 68999999999995555543333 333444 2222233333333322 2232 699999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeEEEeEeeCCCCCCEEeEEEEEeC-CCCeEEEEeeeeEec---
Q 012089 78 NRFLSDMWPYLDKAICANVRTTAQPIFDEYSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG--- 153 (471)
Q Consensus 78 N~~l~~~Wp~~~~~~~~~i~~~~~~~l~~~~p~~~i~~i~~~~~~lG~~~P~i~~vr~~~~-~~~~~~le~~~~~~~--- 153 (471)
|.+|+++||.+++.+++.|.+++|+.|+++.|+| |+.+.+.+||||++||||.+||.|+. +.+.+.||+++++..
T Consensus 227 NtfL~KfW~i~eP~iSqqV~dqvn~~la~~iPsF-I~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~~sftP~d~ 305 (1227)
T COG5038 227 NTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSF-IDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVDFSFTPHDI 305 (1227)
T ss_pred HHHHHhheeccChHHHHHHHHHHHHHHHhhcchh-hhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEeeeccCccch
Confidence 9999999999999999999999999999999999 99999999999999999999999987 567899999999963
Q ss_pred ------------CCcEEEEEEE---ee-eEEEEEEEEEEEEEEEEEEEeeCCCCCCceeEEEEEcCCCceEEEEEEEeC-
Q 012089 154 ------------NPNIVLVLKL---LS-FRITVQLVDLQIFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILG- 216 (471)
Q Consensus 154 ------------~~~i~l~~~~---~~-~~~~v~v~~l~~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g- 216 (471)
+++|.|.++. ++ +++||.|+|+.|.|++||+++ |++.+|++..+.++|+|.|.+||.++|+|
T Consensus 306 sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~-L~~~~PfiktV~~~Lle~Pe~df~l~Plg~ 384 (1227)
T COG5038 306 SDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVE-LMSKYPFIKTVSFQLLEVPEFDFILVPLGG 384 (1227)
T ss_pred hhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEE-ecCCCcceeEEEEEEecCcceeEEEEEcCC
Confidence 4678888865 44 789999999999999999999 99999999999999999999999999987
Q ss_pred ----CCccccchhhHHHHHHHHHhhhcccccCCceeeeccCcccccccCCceEEEEEEEEccccccCc--cCCCCCcEEE
Q 012089 217 ----GDIMSIPGLYQFIQKCITKYVAGIYIWPQTYEIPILDASSVAIKKPVGILHVKVVRASKLLKKD--FLGTSDPYVK 290 (471)
Q Consensus 217 ----~~i~~~P~l~~~i~~~i~~~l~~~~v~P~~~~i~l~~~~~~~~~~~~G~L~V~v~~a~~L~~~d--~~g~~DPyv~ 290 (471)
.||+++|||.+||+++|..++++|+++|+.+++++.+...+....+.|+|.|+|.+|++|...| ..+..|||++
T Consensus 385 ~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit 464 (1227)
T COG5038 385 DFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYIT 464 (1227)
T ss_pred CccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEE
Confidence 4789999999999999999999999999999999998766558889999999999999999988 6799999999
Q ss_pred EEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEE-EEecc
Q 012089 291 LSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEF-TLDLL 369 (471)
Q Consensus 291 v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~-~~~l~ 369 (471)
+...+... .||+++++++||+|||+|++.+... ++.|.++|||.+....|+.+|++.++|..|.....+.. ...+.
T Consensus 465 ~~~~~r~~--gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~ 541 (1227)
T COG5038 465 VTFSDRVI--GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL 541 (1227)
T ss_pred EEeccccC--CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee
Confidence 99765433 3899999999999999999999764 67999999999999999999999999999987654332 33332
Q ss_pred cccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccC-cceEEEEEEeeeecCCCC-C-C
Q 012089 370 KHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALS-GAGLLSVLVQGAEDVEGE-N-H 446 (471)
Q Consensus 370 ~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~L~V~v~~Ak~L~~~-~-~ 446 (471)
.+.+..|+|+.+++|+|..++.....+. . +..+. .+|++.+++++.++|... + .
T Consensus 542 --------~~~k~vGrL~yDl~ffp~~e~k~~~~~s---------~------e~~ed~n~GI~k~tl~~~~~l~~~~~~~ 598 (1227)
T COG5038 542 --------RNTKNVGRLTYDLRFFPVIEDKKELKGS---------V------EPLEDSNTGILKVTLREVKALDELSSKK 598 (1227)
T ss_pred --------ccCccceEEEEeeeeecccCCccccccc---------c------CCcccCCcceeEEEeeccccccCccccc
Confidence 2478899999999999987664322111 0 11122 469999999999999873 2 3
Q ss_pred CCcEEEEEEcCeeeee-C---CCCCCcCC
Q 012089 447 NNPYAIILYKGDKKRT-K---KNSRPCLE 471 (471)
Q Consensus 447 ~dpyv~v~~~~~~~kT-k---~t~nP~Wn 471 (471)
..-|++++.+++...| + .+.+|.||
T Consensus 599 ~~~~a~l~~~~keV~st~~~k~t~~~~wn 627 (1227)
T COG5038 599 DNKSAELYTNAKEVYSTGKLKFTNHPSWN 627 (1227)
T ss_pred cceeEEEEecceEEeccceeeeccCCcee
Confidence 3344999999887743 2 89999997
No 2
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.5e-25 Score=227.93 Aligned_cols=178 Identities=33% Similarity=0.504 Sum_probs=153.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v~ 335 (471)
.++.....|+|+|++|++|+..|..|.+||||++++.+++..+.+|++.++|+||.|||+|.|.+.. ...+.|.+.||
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~ 240 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVY 240 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEE
Confidence 4667789999999999999999977889999999999998888899999999999999999999653 34789999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSG 415 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~ 415 (471)
|+|++++|+++|++.++|..+.......+|.++....... ....|+|.++++|.|
T Consensus 241 ~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~----~~~~gel~~sL~Y~p--------------------- 295 (421)
T KOG1028|consen 241 DFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDS----EELAGELLLSLCYLP--------------------- 295 (421)
T ss_pred ecCCcccccEEEEEEecCccccccccceeeeccccccCCc----ccccceEEEEEEeec---------------------
Confidence 9999999999999999999998887788899887653322 222389999999999
Q ss_pred CCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeee-----eeC---CCCCCcCC
Q 012089 416 NDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 416 ~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-----kTk---~t~nP~Wn 471 (471)
.+|+|+|.|.+||||.. .+.+||||++++....+ ||. ++.||+||
T Consensus 296 -----------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~n 351 (421)
T KOG1028|consen 296 -----------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFN 351 (421)
T ss_pred -----------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCccc
Confidence 57999999999999986 46899999999854322 554 99999998
No 3
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=1.1e-21 Score=165.65 Aligned_cols=119 Identities=21% Similarity=0.338 Sum_probs=101.7
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|.|+|+|++|++++..+ .|++||||++.+++++. +|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~---kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVY---ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEE---EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCc
Confidence 489999999999998777 79999999999987654 8888765 79999999999999753 468999999999999
Q ss_pred CCCeeEEEEEECc-ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 342 GHDRLGMQLVPLK-LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 342 ~d~~lG~~~i~L~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+|++||++.+++. .+..++....|++|... ...+..|+|+|+++|
T Consensus 76 ~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~------~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 MDERIAWTHITIPESVFNGETLDDWYSLSGK------QGEDKEGMINLVFSY 121 (121)
T ss_pred CCceEEEEEEECchhccCCCCccccEeCcCc------cCCCCceEEEEEEeC
Confidence 9999999999996 57777777889988642 123567999999987
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.3e-20 Score=161.46 Aligned_cols=119 Identities=33% Similarity=0.448 Sum_probs=101.1
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec-----CCCCeEEEEEEEcCCC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-----PESQILQLQVFDWDKV 340 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~~~~L~v~v~d~d~~ 340 (471)
++|+|++|+||+.++..|.+||||++++++.+ ++|+++++++||+|||+|.|.+.. +....|.++|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~---~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK---YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee---eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999999988999999999998654 489999999999999999999976 3567899999999998
Q ss_pred CCCCeeEEEEEECcccC--CCCceEEEEecccccCCCCCCCCccceEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKLLT--PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~--~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (471)
++|++||++.++|+++. .+.....|++|..... ...+.+|+|++++.
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----CCccccceEEEEeC
Confidence 89999999999999987 5556678888864221 23467899999873
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.85 E-value=3.3e-20 Score=157.79 Aligned_cols=120 Identities=33% Similarity=0.513 Sum_probs=105.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..|..|.+||||++++++.. .++|+++.++.||.|||+|.|.+.+. .+.|.|+|||++..++|++
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~--~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT--VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE--EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcc
Confidence 78999999999999988999999999998632 35899999999999999999998765 5789999999999999999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
||++.++++++..+...+.|++|... .+.+..|+|++.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDP------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCC------CCccCceEEEEEEEECC
Confidence 99999999999988888999998542 12467899999999976
No 6
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.84 E-value=1.7e-20 Score=158.76 Aligned_cols=117 Identities=32% Similarity=0.444 Sum_probs=100.6
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|+++. ++.||.|||.|.|.+.....+.|.++|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~---~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT---KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc---cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999999989999999999998743 4787764 5799999999999998766678999999998765
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
|++||++.+++.++..+.....|++|.. +++..|+|+++++|
T Consensus 77 ~~~iG~~~~~l~~~~~~~~~~~w~~L~~--------~~~~~G~i~l~l~f 118 (118)
T cd08681 77 PDLIGDTEVDLSPALKEGEFDDWYELTL--------KGRYAGEVYLELTF 118 (118)
T ss_pred CcceEEEEEecHHHhhcCCCCCcEEecc--------CCcEeeEEEEEEEC
Confidence 8999999999999876666677887753 24678999999986
No 7
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.84 E-value=5.5e-20 Score=155.17 Aligned_cols=115 Identities=34% Similarity=0.513 Sum_probs=103.4
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
+++|+|++|++|+..+..+.+||||++++++.. ++|+++++|.||.|||+|.|.+.+...+.|.++|||++..++|+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~ 77 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK---YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDE 77 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe---EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 478999999999999988999999999997644 48999999999999999999998766789999999999988999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+||++.++|+++..+.....|++|.+ ..|+|++.++|.
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~-----------~~G~~~~~~~~~ 115 (116)
T cd08376 78 FIGRCEIDLSALPREQTHSLELELED-----------GEGSLLLLLTLT 115 (116)
T ss_pred eEEEEEEeHHHCCCCCceEEEEEccC-----------CCcEEEEEEEec
Confidence 99999999999998888899998842 269999999884
No 8
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.84 E-value=6.6e-20 Score=158.76 Aligned_cols=122 Identities=30% Similarity=0.432 Sum_probs=103.8
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
......|.|+|+|++|++|+..|..|.+||||+++++... ++|++++++.||.|||+|.|.+.++..+.|.++|||+
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~---~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~ 85 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE---HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDR 85 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe---eeccccCCCCCCccCceEEEEecCccCCEEEEEEEEC
Confidence 3566789999999999999999989999999999997654 4899999999999999999999877778999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-----CceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPH-----ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+..++|++||++.+++.++... .....+..+ ..+..|+|+|++++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc----------ccccceeEEEEEEe
Confidence 9999999999999999998862 122233332 25778999999986
No 9
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.83 E-value=2.4e-20 Score=155.05 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=90.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC-ccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG-EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v 334 (471)
.+....|.|+|+|++|++|+ . .|.+||||++++.+ .+..+++|+++++|+||+|||+|.|.+.. .....|.|+|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 35667899999999999999 3 36799999999975 34456799999999999999999999874 3467899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 367 (471)
||+|+++++++||++.++++++..+.+.+.|.+
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999999999999999999998865555555644
No 10
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.83 E-value=9.6e-20 Score=154.44 Aligned_cols=116 Identities=34% Similarity=0.483 Sum_probs=101.8
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+.....+.|.|+|||++.. +|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998889999999999975434456999999999999999999999766567899999999988 8999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
||++.+++.++..+.....|++|.. +.+|+|++++..
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~----------~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNP----------QGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCC----------CCCceEEEEEEe
Confidence 9999999999998888899998742 357999988864
No 11
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.83 E-value=7.9e-20 Score=153.95 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=93.1
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcC----ccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEEEEc
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVFDW 337 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~----~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v~d~ 337 (471)
.|+|+|++|++|+..+ .|.+||||++++.+ .+.++++|+++++|+||+|||+|.|.+.. +....|.|+|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 49999999999842 33345689999999999999999999974 3346799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccC
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 373 (471)
+..++|++||++.+||.++..++....|++|.+..+
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence 988889999999999999999888899999876544
No 12
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.83 E-value=8.7e-20 Score=155.06 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=99.6
Q ss_pred EEEEEEEEccc---cccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 265 ILHVKVVRASK---LLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 265 ~L~V~v~~a~~---L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|+|+|++|+| |+.+|..|.+||||++++++++. +|+++++++||+|||+|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~---rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV---RTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe---EcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcc
Confidence 38999999999 89999999999999999987654 8999999999999999999997754 58999999999873
Q ss_pred ------CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 012089 342 ------GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 342 ------~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
+|++||++.++|.++..+.....|++|... + ....+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~-~---~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSL-N---PSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeC-C---CCCccCCcEEEe
Confidence 899999999999999988888899988642 1 123567788875
No 13
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=4.9e-20 Score=158.96 Aligned_cols=100 Identities=45% Similarity=0.746 Sum_probs=91.8
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.+.|.|+|+|++|.||..+|..++|||||++.+++++. +|+++++++||+|||.|.|.+.++ ...|+++|||+|.+
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l---kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL---KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTF 78 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee---eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCC
Confidence 46799999999999999999889999999999999887 899999999999999999999986 56999999999999
Q ss_pred CCCCeeEEEEEECcccCCCCceEE
Q 012089 341 GGHDRLGMQLVPLKLLTPHETKEF 364 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~~~~ 364 (471)
++||+||.+.|+|..+.......+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999999876654444
No 14
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=1.9e-19 Score=154.47 Aligned_cols=121 Identities=32% Similarity=0.467 Sum_probs=102.0
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC---CCeEEEEEEEcCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE---SQILQLQVFDWDKVG 341 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~L~v~v~d~d~~~ 341 (471)
.|+|+|++|++|+..+..|.+||||++++++++ ++|++++++.||.|||.|.|.+.++. ...|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~---~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK---KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE---ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 389999999999999988999999999998754 48999999999999999999987543 368999999999886
Q ss_pred -CCCeeEEEEEECcccC-CCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 342 -GHDRLGMQLVPLKLLT-PHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 342 -~d~~lG~~~i~L~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
+|++||++.++++++. .+.....|++|.+.. ..++.+|+|+|++.+.
T Consensus 78 ~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 78 RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG-----LFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCC-----CCCCccEEEEEEEEEc
Confidence 8999999999999998 455667888886431 1245799999999863
No 15
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=2.7e-19 Score=152.67 Aligned_cols=122 Identities=31% Similarity=0.516 Sum_probs=101.5
Q ss_pred ceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 263 VGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
.|.|+|+|++|++|+..+ ..+.+||||++++++. ...++|++++++.||.|||.|.|.+. ...+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCC
Confidence 489999999999999755 4467999999999873 23469999999999999999999987 44679999999999888
Q ss_pred CCCeeEEEEEECcccCCCCceE-EEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 342 GHDRLGMQLVPLKLLTPHETKE-FTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|++||++.++|.++..+.... .+..+. .+++..|+|+++++|+|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--------~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLL--------RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhh--------cCCccceEEEEEEEeCC
Confidence 9999999999999998765543 333332 13667899999999987
No 16
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.81 E-value=3.1e-19 Score=156.96 Aligned_cols=127 Identities=25% Similarity=0.310 Sum_probs=104.7
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecC-CCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKK-NLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
.|+|+|++|++|+.+|..|.+||||+++++++. .+|+++.+ +.||+|||+|.|.+.++....+.++|||++..++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~---~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~d 77 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV---LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKD 77 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE---eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCC
Confidence 389999999999999999999999999999754 47888766 69999999999999876667999999999988899
Q ss_pred CeeEEEEEECcccCCC----CceEEEEecccccCC-CCCCCCccceEEEEEEEEEe
Q 012089 344 DRLGMQLVPLKLLTPH----ETKEFTLDLLKHTNI-SDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~----~~~~~~~~l~~~~~~-~~~~~~~~~G~l~l~l~y~p 394 (471)
++||++.++|+++..+ .....|++|...... .+.+..+..|+|+|+++|.+
T Consensus 78 d~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 78 EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9999999999998743 345788888654221 01123567899999999975
No 17
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=2.9e-19 Score=153.41 Aligned_cols=123 Identities=30% Similarity=0.453 Sum_probs=103.7
Q ss_pred eEEEEEEEEccccccCcc--CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 264 GILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
|+|+|+|++|++|+..+. .+.+||||++++++.. ++|++++++.||.|||+|.|.+.++..+.|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~---~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR---FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE---EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 789999999999999888 8899999999997644 48999999999999999999998766789999999999988
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
++++||++.+++.++.. ......|++|..... ..+....|+|+|+++|
T Consensus 78 ~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCcceEEEEEHHHhhcccccCccceeEEccCccc---CccccccceEEEEEEC
Confidence 99999999999999873 233567777754311 1235679999999975
No 18
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.81 E-value=3.3e-19 Score=152.10 Aligned_cols=122 Identities=30% Similarity=0.485 Sum_probs=104.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|+|+|++|++|+..|..+.+||||++++++.. .+|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~ 77 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT---LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKND 77 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE---EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 389999999999999988899999999997654 48999999999999999999998766678999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+||++.++|.++..+.....|++|.+.... ....++..|.|++.+
T Consensus 78 ~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 78 FLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred EeEEEEEEHHHcccCCCCCCEEECCCCCCC-CccccCceEEEEEEe
Confidence 999999999999877667788888754322 234578899999876
No 19
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.81 E-value=6.9e-19 Score=150.71 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=103.1
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|+||+. ..|.+||||+++++.. ...++|+++++|.||.|||.|.|.+.. ..+.|.|+|||++..++|++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP-PQKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC-CcEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCCCCCce
Confidence 5799999999987 6789999999999742 234699999999999999999999854 46789999999999889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
||++.+++.++..+.....|++|..... .+.+..|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~----~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPY----EGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCC----CCCCcceEEEEEEEEecc
Confidence 9999999999998777778888764321 135679999999999873
No 20
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.81 E-value=3.7e-19 Score=154.77 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=96.4
Q ss_pred CceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 012089 262 PVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~-d~ 337 (471)
..|.|+|+|++|+||+..+ ..|.+||||++++.++. ..++||+++++|+||+|||+|.|.+. .....|.++|| |+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 3589999999999999864 56889999999997654 34679999999999999999999998 56789999999 67
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccC
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN 373 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~ 373 (471)
+.++++++||++.++|+++..+.....|++|.+...
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSS 141 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCCccc
Confidence 888899999999999999987777788999876543
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=7.2e-19 Score=149.30 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=100.7
Q ss_pred EEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 266 LHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 266 L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
|+|+|++|+||+..+ ..|.+||||+++++.+. .++|+++++|+||.|||+|.|.+.+. ...|.|.|||++.+++|+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~--~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~ 78 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE--VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDS 78 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc--EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCc
Confidence 689999999999874 45789999999997543 36899999999999999999999753 469999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+||++.++++++..+...+.|++|.+.. ...+..|+|++++++
T Consensus 79 ~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 79 VIGKVAIKKEDLHKYYGKDTWFPLQPVD-----ADSEVQGKVHLELRL 121 (121)
T ss_pred eEEEEEEEHHHccCCCCcEeeEEEEccC-----CCCcccEEEEEEEEC
Confidence 9999999999998877788899886531 123468999999864
No 22
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.80 E-value=2.5e-19 Score=152.35 Aligned_cols=105 Identities=31% Similarity=0.369 Sum_probs=92.2
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEe-e--cCCCCeEEEEEEEc
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVV-K--EPESQILQLQVFDW 337 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v-~--~~~~~~L~v~v~d~ 337 (471)
.|.|+|+|++|+||+..+ .+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 589999999999999999 8999999999998643 3457899999999999999999987 2 33467899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+.++++++||++.++|.++..++....|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 9999999999999999999977766777765
No 23
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.80 E-value=1.3e-18 Score=148.99 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=101.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
...|+|+|++|+||+.. +.+||||++++++.. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~--~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVK--VARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEe--EEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 35799999999999875 478999999997643 2478874 68999999999998765544689999999999999
Q ss_pred CCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 343 HDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
|++||++.++|.++..+...+.|++|.+.. ....+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSAS----PLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccCC----CCCCCcCcEEEEEEEEEc
Confidence 999999999999999888888999986531 123567899999999986
No 24
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.80 E-value=7.2e-19 Score=149.40 Aligned_cols=115 Identities=34% Similarity=0.510 Sum_probs=100.6
Q ss_pred eEEEEEEEEccccccCcc------CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDF------LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~------~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
|+|+|+|++|+||+..|. .|.+||||++++++. .++|++++++.||.|||+|.|.+.+...+.|.++|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQ---TFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCE---eEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 789999999999998875 368999999999863 35899999999999999999999876678999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
+.. +|++||++.+++.++..+.....|++|.. ...|+|+++++|
T Consensus 78 ~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------~~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED----------VKSGRLHLKLEW 121 (121)
T ss_pred CCC-CCCcEEEEEEEHHHhcccCccceEEECcC----------CCCceEEEEEeC
Confidence 987 89999999999999987777788888742 367999999875
No 25
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.80 E-value=4.6e-19 Score=151.47 Aligned_cols=110 Identities=34% Similarity=0.407 Sum_probs=95.3
Q ss_pred ccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
+....+.|+|+|++|+||+++|.. |.+||||++++.+.. ...++|+++++++||.|||+|.|.+.. .....|.++
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~ 89 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLS 89 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 455678999999999999999875 899999999997654 345689999999999999999999863 335689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++.++++++||++.++|.++..+.....|++|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 99999999999999999999999877767778775
No 26
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.79 E-value=2.2e-18 Score=147.56 Aligned_cols=123 Identities=26% Similarity=0.363 Sum_probs=101.8
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
|.++|+|+|++|++|+..|..|.+||||++.++++. .+|++++++.||+|||.|.|.+.+. ...|.|+|||++..
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~---~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~- 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES---VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL- 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE---EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-
Confidence 468999999999999999988999999999998765 4899999999999999999988764 57899999999876
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|++||++.+++.++.....++ ++|.... ...+++..|+|.+++++.+
T Consensus 76 ~d~~lG~~~~~l~~~~~~~~~~--~~l~~~~---~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 CDEFLGQATLSADPNDSQTLRT--LPLRKRG---RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCceEEEEEecccCCCcCceE--EEcccCC---CCCCCCCCCEEEEEEEEcc
Confidence 5899999999999876554444 4443221 1235788999999998865
No 27
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.9e-18 Score=149.42 Aligned_cols=123 Identities=35% Similarity=0.516 Sum_probs=101.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.|+|+|++|++|+..|..|.+||||++++.+.. ...++|+++++|.||.|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 489999999999999988999999999997641 2245899999999999999999998653 56899999999999
Q ss_pred CCCCeeEEEEEECcccCCCCc------eEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKLLTPHET------KEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~------~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
++|++||++.+++.++..+.. ...|++|.+. ...++..|+|+++++|+
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR-----SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec-----CCCCcceeEEEEEEeeC
Confidence 999999999999999886532 3466776542 11356799999999984
No 28
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=9.6e-19 Score=149.39 Aligned_cols=111 Identities=31% Similarity=0.420 Sum_probs=96.5
Q ss_pred cccCCceEEEEEEEEccccccCcc-CCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~-~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....|.|.|+|++|+||+..+. .|.+||||++++.+.. ...+||++++++.||.|||+|.|.+... ....|.|
T Consensus 9 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~ 88 (125)
T cd04029 9 SYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQL 88 (125)
T ss_pred EEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 456678999999999999998875 4889999999997644 3457899999999999999999998642 3568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+|||++..+++++||++.++|.++........|++|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999999999999999999999999988878888876
No 29
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.78 E-value=1.2e-18 Score=148.86 Aligned_cols=112 Identities=30% Similarity=0.552 Sum_probs=98.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~ 335 (471)
.+....|.|+|+|++|+||+..+..|.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.++||
T Consensus 10 ~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 10 EYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred EECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 35667799999999999999999889999999999975544457999999999999999999998643 3568999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|++.+++|++||++.++|+++..+.....|++|+
T Consensus 90 d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999999999999999999998777788888764
No 30
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=5e-18 Score=150.79 Aligned_cols=123 Identities=32% Similarity=0.444 Sum_probs=103.1
Q ss_pred ceEEEEEEEEccccccCc------------------------------cCCCCCcEEEEEEcCccccceeeeeecCCCCC
Q 012089 263 VGILHVKVVRASKLLKKD------------------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP 312 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d------------------------------~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP 312 (471)
.|+|.|+|.+|++|+.+| ..|.+||||++++++.+. .+|++++++.||
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~--~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARV--ARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEe--eEEEEeCCCCCC
Confidence 599999999999999887 346789999999986543 589999999999
Q ss_pred eEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 313 EWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 313 ~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
.|||+|.|.+... .+.|.|+|||++..+ +++||++.++++++..+...+.|++|..... ...+..|+|+++++|
T Consensus 84 ~WnE~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~----~~~~~~~~l~v~~~f 157 (158)
T cd04015 84 VWNESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG----KPPKPGAKIRVSLQF 157 (158)
T ss_pred ccceEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC----CCCCCCCEEEEEEEE
Confidence 9999999998754 468999999999764 6899999999999998888889999865311 123557899999998
Q ss_pred E
Q 012089 393 V 393 (471)
Q Consensus 393 ~ 393 (471)
.
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=3.2e-18 Score=145.28 Aligned_cols=113 Identities=26% Similarity=0.365 Sum_probs=95.8
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|+||+.. .+||||++++++.. .+|++++++.||+|||+|.|.+..+....|.++|||++.. ++++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~---~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYK---GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDF 73 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCcc---ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCce
Confidence 89999999999887 78999999998643 4999999999999999999998776678999999999976 8899
Q ss_pred eEEEEEECcccCCCC-----ceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 346 LGMQLVPLKLLTPHE-----TKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 346 lG~~~i~L~~l~~~~-----~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
||++.++|+++.... ....|++|.... +.+.+|+|+|++.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------GGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------CCccceEEEEEEEe
Confidence 999999999987532 245788876531 24678999999987
No 32
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=5.6e-18 Score=143.52 Aligned_cols=118 Identities=34% Similarity=0.518 Sum_probs=100.0
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. .+|++++++.||.|||+|.|.+.+. ...+.++|||++..+++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~---~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~ 76 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR---LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKP 76 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe---eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999998654 4899999999999999999998653 57899999999988899
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
++||++.+++.++..+.. .|+.|... ....+..|+|++++.+
T Consensus 77 ~~iG~~~~~l~~~~~~~~--~~~~l~~~-----~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 77 EFLGKVAIPLLSIKNGER--KWYALKDK-----KLRTRAKGSILLEMDV 118 (119)
T ss_pred ceeeEEEEEHHHCCCCCc--eEEECccc-----CCCCceeeEEEEEEEe
Confidence 999999999999976654 45665432 1234579999999876
No 33
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=3.4e-18 Score=149.61 Aligned_cols=124 Identities=28% Similarity=0.361 Sum_probs=98.4
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEee---------------cCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVK---------------EPES 327 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~---------------~~~~ 327 (471)
.|+|+|++|+||+. .+|.+||||++++.+. +...++|+++++|+||+|||+|.|.+. +...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 4689999999999864 223468999999999999999999985 1223
Q ss_pred CeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCC-----CCCCccceEEEEEE
Q 012089 328 QILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISD-----PKDMKQRGKIVVEL 390 (471)
Q Consensus 328 ~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~-----~~~~~~~G~l~l~l 390 (471)
..|.++|||++..++|++||++.++|.++..+ .....|++|.+.....+ ..+....|.|++++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 57999999999888999999999999999876 56678888866533221 12345667777764
No 34
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.77 E-value=1.6e-18 Score=145.04 Aligned_cols=96 Identities=36% Similarity=0.569 Sum_probs=85.3
Q ss_pred eEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (471)
|+|+|+|++|++|+..|.. +.+||||++++.+.....++|+++++|+||.|||+|.|.+... ..+.|.++|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 8999999999976544457999999999999999999987643 35689999999999
Q ss_pred CCCCCeeEEEEEECcccCCC
Q 012089 340 VGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~ 359 (471)
.++|++||++.+++.++...
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 81 FTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCcceEEEEEHHHHhcC
Confidence 99999999999999999843
No 35
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.77 E-value=3.7e-18 Score=146.37 Aligned_cols=112 Identities=28% Similarity=0.361 Sum_probs=93.7
Q ss_pred cccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEE-ee--cCCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VK--EPESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~--~~~~~~L~v~ 333 (471)
.+....+.|+|+|++|+||+..+.. |.+||||++++.+.....+||+++++++||.|||+|.|. +. +.....|.++
T Consensus 10 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~ 89 (128)
T cd08388 10 RYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFA 89 (128)
T ss_pred EEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEE
Confidence 3566678999999999999998876 899999999998665556799999999999999999994 43 2234579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l~ 369 (471)
|||++.+++|++||++.++|+++... .....|++++
T Consensus 90 V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 90 VLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 99999999999999999999998654 4566777653
No 36
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=3e-18 Score=146.31 Aligned_cols=110 Identities=35% Similarity=0.456 Sum_probs=96.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFD 336 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d 336 (471)
+....|.|+|+|++|+||+..+..+.+||||++++.+.....++|++++++.||.|||+|.|.+... ....|.|+|||
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d 90 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYD 90 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEe
Confidence 5556789999999999999999889999999999986655567999999999999999999998642 35689999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
++.++++++||++.++|.++..+.....|++|
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 99999999999999999999877777888876
No 37
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.77 E-value=1.9e-18 Score=146.71 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=93.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....+.|.|+|++|+||+..+..|.+||||++++.++. ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 4666779999999999999999888899999999998765 3467999999999999999999998643 4679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCC-ceEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE-TKEFTLD 367 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~ 367 (471)
+|||++..+++++||++.++|+++.... ....|++
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999996543 3445554
No 38
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.76 E-value=1.3e-17 Score=142.86 Aligned_cols=118 Identities=31% Similarity=0.434 Sum_probs=100.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|+|+|++|++|+..+..+.+||||++.+.+.....++|++++++.||.|||+|.|.+.......|.|+|||++..++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 58999999999999998899999999998765344568999999999999999999998755678999999999888999
Q ss_pred eeEEEEEECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 345 RLGMQLVPLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 345 ~lG~~~i~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+||++.++|.++.. +.....|+++. ..|++++.++|.-
T Consensus 82 ~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------~~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGDDGLPREIWLDLD------------TQGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCCCCCCceEEEEcC------------CCCeEEEEEEEee
Confidence 99999999987643 33566888762 2699999998864
No 39
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.76 E-value=1.5e-17 Score=143.57 Aligned_cols=116 Identities=28% Similarity=0.440 Sum_probs=100.4
Q ss_pred ceEEEEEEEEccccccCccC----------CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEE
Q 012089 263 VGILHVKVVRASKLLKKDFL----------GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQL 332 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~----------g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v 332 (471)
.|.|+|+|++|++|+..|.. +.+||||++.++++.. .+|++++++.||.|||+|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~--~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI--GKTSTKPKTNSPVWNEEFTTEVH--NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE--eEEeEcCCCCCCCcceeEEEEcC--CCCEEEE
Confidence 48999999999999988753 6799999999986543 48899999999999999999996 3478999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCC--CCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTP--HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~--~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.|||++..+++++||++.++|.++.. +...+.|++|. ..|+|+++++|..
T Consensus 79 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------CCcEEEEEEEEec
Confidence 99999988899999999999999987 55678888873 4699999999875
No 40
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.76 E-value=1.5e-17 Score=141.40 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=98.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|++|++.|..|.+||||++.+++.. .++|++++++.||.|||.|.|.+... .+.|.|+|||++..++|++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~ 78 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV--IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDV 78 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe--eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCE
Confidence 78999999999999999999999999997643 35899999999999999999998643 4689999999999999999
Q ss_pred eEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEE
Q 012089 346 LGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (471)
Q Consensus 346 lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (471)
||++.++++++..+ ...+.|++|.+. ...++..|+|++.++
T Consensus 79 iG~~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~~~~G~i~l~~~ 120 (121)
T cd04054 79 IGKVSLTREVISAHPRGIDGWMNLTEV-----DPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEEcHHHhccCCCCCCcEEECeee-----CCCCccccEEEEEEE
Confidence 99999999888754 335678887542 122457899999875
No 41
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.76 E-value=6.4e-18 Score=144.66 Aligned_cols=111 Identities=28% Similarity=0.330 Sum_probs=92.9
Q ss_pred cccCCceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....+.|.|+|++|+||+.+|.. |.+||||++++.+.. ..++||++++++.||+|||+|.|.+... ....|.+
T Consensus 9 ~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 9 HYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred EEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 3556679999999999999999875 999999999998664 3356899999999999999999998643 3569999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCC---ceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHE---TKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~---~~~~~~~l 368 (471)
.|||++.++++++||++.|+|.++.... ....|++|
T Consensus 89 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999999999999999999999986542 33456654
No 42
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=2.4e-17 Score=141.33 Aligned_cols=116 Identities=32% Similarity=0.466 Sum_probs=99.7
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCCCCeeE
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGGHDRLG 347 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~~d~~lG 347 (471)
|++|++|+. ..|.+||||++++++.+ ++|++++++.||.|||+|.|.+... ..+.|.++|||++..++|++||
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~---~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG 76 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVK---KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIG 76 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEe---eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEE
Confidence 689999998 67899999999998654 4899999999999999999999754 4679999999999988999999
Q ss_pred EEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 348 MQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 348 ~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
++.++++++..+.....|++|... ......|+|+++++|.|..
T Consensus 77 ~~~~~l~~l~~~~~~~~~~~L~~~------~~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 77 SATVSLQDLVSEGLLEVTEPLLDS------NGRPTGATISLEVSYQPPD 119 (127)
T ss_pred EEEEEhhHcccCCceEEEEeCcCC------CCCcccEEEEEEEEEeCCC
Confidence 999999999988888888888542 1233579999999999954
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=2.2e-17 Score=143.16 Aligned_cols=120 Identities=25% Similarity=0.433 Sum_probs=98.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---------CCCeEEEEEE
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQVF 335 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~v~v~ 335 (471)
.|+|+|++|++|+.+|..|.+||||++++++.. ++|+++++|.||.|||+|.|.+... ....+.++||
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~---~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS---QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee---eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 489999999999999999999999999998654 4899999999999999999975432 1257999999
Q ss_pred EcCCCCCCCeeEEEEE-ECcccCC---CCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 336 DWDKVGGHDRLGMQLV-PLKLLTP---HETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i-~L~~l~~---~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
|++..++|++||++.+ ++..+.. ......|++|.+ .+...|+|++++++.+.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~--------~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK--------GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec--------CCCchhheeEEeEEEEe
Confidence 9999999999999987 4444432 345668888753 24579999999999874
No 44
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=9.2e-18 Score=143.18 Aligned_cols=111 Identities=27% Similarity=0.344 Sum_probs=97.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEE-eec--CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLV-VKE--PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~--~~~~~L~v~v 334 (471)
.+....+.|+|+|++|+||+..+..|.+||||++.+.+.+...++|+++++ .||+|||+|.|. +.. .....|.++|
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V 88 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRL 88 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEE
Confidence 466677899999999999999998899999999998776666779999887 999999999998 542 2367899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++.++++++||++.++|+++..+.....|++|.
T Consensus 89 ~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 89 YGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99999999999999999999998888888888874
No 45
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.75 E-value=1.3e-17 Score=142.59 Aligned_cols=112 Identities=38% Similarity=0.554 Sum_probs=96.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v 334 (471)
.+....+.|+|+|++|+||+..|..+.+||||++++.+.....++|++++++.||.|||+|.|.+.. .....|.++|
T Consensus 10 ~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 10 SYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 3556678999999999999999988999999999996544445799999999999999999997532 2346799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++++++..+.....|++|.
T Consensus 90 ~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999999999999999999999887888888774
No 46
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.74 E-value=1e-17 Score=139.12 Aligned_cols=94 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred eEEEEEEEEccccccCccC----CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 012089 264 GILHVKVVRASKLLKKDFL----GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~----g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d 338 (471)
|+|.|+|++|++|+..+.. +.+||||+++++... +||+++++++||+|||.|.|.+.+.. ...|.|+|||++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~---~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d 77 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV---FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKD 77 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe---EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence 7899999999999987642 358999999997543 48999999999999999999986543 457999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCC
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
..++|++||++.++|+++..+.
T Consensus 78 ~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 78 KFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcceEEEEEEHHHHHhhC
Confidence 9999999999999999997653
No 47
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=1.5e-17 Score=141.49 Aligned_cols=108 Identities=29% Similarity=0.415 Sum_probs=92.0
Q ss_pred eeeccCcccccccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec-CC
Q 012089 248 EIPILDASSVAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE-PE 326 (471)
Q Consensus 248 ~i~l~~~~~~~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~ 326 (471)
.-|++++..+......|.|+|+|++|++|+. +..+.+||||++++++. .++|++++++.||+|||+|.|.... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~ 87 (127)
T cd04032 12 SSPNVNSNCCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQ---EKRTEVIWNNNNPRWNATFDFGSVELSP 87 (127)
T ss_pred CCCCcCCCcCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCc---cccCceecCCCCCcCCCEEEEecccCCC
Confidence 4577776655568889999999999999984 66789999999999866 4599999999999999999997533 34
Q ss_pred CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 012089 327 SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 327 ~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~ 359 (471)
.+.|+|+|||++..++|++||++.++|.....+
T Consensus 88 ~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 88 GGKLRFEVWDRDNGWDDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCEEEEEEEeCCCCCCCCeeEEEEEEecCCcee
Confidence 679999999999999999999999999976643
No 48
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=2.6e-17 Score=140.24 Aligned_cols=118 Identities=36% Similarity=0.547 Sum_probs=96.2
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC--C
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG--H 343 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~--d 343 (471)
|+|+|++|++|+..+..+.+||||++++++. ..++|++++++.||.|||+|.|.+.. .+.|.++|||++..++ |
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d 77 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG--QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQ 77 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc--cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCC
Confidence 7899999999999998899999999999753 34689999999999999999999965 6799999999998765 5
Q ss_pred CeeEEEEEECcccCCCC-ceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHE-TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
++||++.+++.++.... ....|+++.... + ...+...|+|.+++
T Consensus 78 ~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~G~v~~~~ 122 (123)
T cd08382 78 GFLGCVRIRANAVLPLKDTGYQRLDLRKLK-K--SDNLSVRGKIVVSL 122 (123)
T ss_pred ceEeEEEEEHHHccccCCCccceeEeecCC-C--CCCceEeeEEEEEe
Confidence 79999999999987554 335577664321 1 12456789998876
No 49
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.74 E-value=9.1e-18 Score=141.98 Aligned_cols=106 Identities=25% Similarity=0.275 Sum_probs=88.5
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc--cceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEcC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDWD 338 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~d 338 (471)
..+.|.|+|++|+||+..+ .|.+||||++++.+... ..++|++++++.||.|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 4589999999999999998 78999999999987532 3458999999999999999999986422 357899999999
Q ss_pred CCC-CCCeeEEEEEECcccCCCCceEEEEec
Q 012089 339 KVG-GHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 339 ~~~-~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
... ++++||++.++|.++..+.....|+.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 875 478999999999999866655666643
No 50
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.73 E-value=2.7e-17 Score=141.00 Aligned_cols=110 Identities=30% Similarity=0.338 Sum_probs=94.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....+.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+... ....|.+.|
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v 90 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAV 90 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEE
Confidence 556679999999999999999988999999999997543 3457999999999999999999998632 356899999
Q ss_pred EEcCCC--CCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 335 FDWDKV--GGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 335 ~d~d~~--~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
||++.. ++|++||++.++|.++..+.....|++|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999875 6899999999999999877777778776
No 51
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.73 E-value=1.8e-17 Score=141.23 Aligned_cols=111 Identities=31% Similarity=0.412 Sum_probs=94.1
Q ss_pred cccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccc--cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKL--PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v 332 (471)
.+....|.|+|+|++|+||+..+ ..+.+||||++++.+... ..++|++++++.||.|||+|.|.+... ....|.+
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 8 SYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 35567799999999999999988 778999999999865432 456899999999999999999998643 2568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
+|||++..+++++||++.++|.++..+.....|++|
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 999999999999999999999999766666677754
No 52
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=4.1e-17 Score=139.08 Aligned_cols=112 Identities=28% Similarity=0.371 Sum_probs=97.2
Q ss_pred cccCCceEEEEEEEEccccccCc-cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKD-FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d-~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
.++...+.|.|+|++|+||+..+ ..+.+||||++++.+.....++|+++++++||+|||+|.|.+... ....|.|+|
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v 87 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSV 87 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEE
Confidence 45667799999999999999998 678999999999965444456899999999999999999998643 245899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++|.++........|++|.
T Consensus 88 ~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 88 YDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 99999888999999999999999888888888873
No 53
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=3.2e-17 Score=135.69 Aligned_cols=99 Identities=30% Similarity=0.438 Sum_probs=87.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|.|+|++|++|+..+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.++..+.|.|+|||++. ++
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~---~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~ 74 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKT---TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GK 74 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCE---EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CC
Confidence 37899999999999988899999999999874 3589999999999999999999998777899999999985 78
Q ss_pred eeEEEEEECcccCCCC--ceEEEEecc
Q 012089 345 RLGMQLVPLKLLTPHE--TKEFTLDLL 369 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~--~~~~~~~l~ 369 (471)
+||++.++|.++..+. ....|++|.
T Consensus 75 ~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 75 SLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred ccEEEEEEHHHhhccccceeeeeEecC
Confidence 9999999999987653 456788774
No 54
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=4.7e-17 Score=139.10 Aligned_cols=109 Identities=29% Similarity=0.433 Sum_probs=90.2
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC---CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP---ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~~L~v~ 333 (471)
+....|.|+|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~ 90 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVT 90 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEE
Confidence 455678999999999999999988999999999997632 2356899999999999999999986432 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++..+++++||++.++|.+... .....|++|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccc-cCCcceEEC
Confidence 9999998899999999999998332 234567665
No 55
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=1.8e-16 Score=138.92 Aligned_cols=124 Identities=23% Similarity=0.245 Sum_probs=98.2
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCccccceeeeeecCCCCCeEeeEEEEEeecCC--------CCeEEEE
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--------SQILQLQ 333 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--------~~~L~v~ 333 (471)
|.|+|....+.+|+..+..+.+||||++++ .+......||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445554444444788887889999999997 334445679999999999999999999996431 4679999
Q ss_pred EEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 334 VFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 334 v~d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
|||++.+ ++|++||++.++|+.+..+.....+++|+.. .....|.|+++++.-.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------CCCcCCEEEEEEEecC
Confidence 9999986 5799999999999999887766778887642 2456789999998764
No 56
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=1.4e-16 Score=134.07 Aligned_cols=114 Identities=41% Similarity=0.632 Sum_probs=97.7
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|++|+..+..+.+||||++++.+.. .++|+++.++.||.|||+|.|.+.....+.+.|+|||++..+++++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~--~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~ 78 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK--VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDL 78 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc--ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCc
Confidence 57999999999998888899999999997632 3689999999999999999999986666889999999998889999
Q ss_pred eEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEE
Q 012089 346 LGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 346 lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
||++.+++.++..+.....|++|... ++...|.|.+
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~-------g~~~~~~~~~ 114 (115)
T cd04040 79 LGSAYIDLSDLEPEETTELTLPLDGQ-------GGGKLGAVFL 114 (115)
T ss_pred eEEEEEEHHHcCCCCcEEEEEECcCC-------CCccCceEEc
Confidence 99999999999988888899888542 3455666643
No 57
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.6e-16 Score=136.13 Aligned_cols=115 Identities=32% Similarity=0.511 Sum_probs=94.9
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV---- 340 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~---- 340 (471)
.|+|+|++|++|+..|..|.+||||++++++.. ++|++++++.||.|||+|.|.+..+ ...|.++|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~---~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK---KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe---eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccc
Confidence 589999999999999988999999999997543 4899999999999999999988654 46899999999852
Q ss_pred -------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 341 -------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 341 -------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+.+++||++.+++.++... ...|+.|.+.. .....+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRT-----DKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCC--CCeEEECccCC-----CCCcEeEEEEEEC
Confidence 4689999999999988644 45777776532 2356799999874
No 58
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=7.8e-17 Score=141.48 Aligned_cols=106 Identities=37% Similarity=0.552 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccc--------------------------cceeeeeecCCCC
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL--------------------------PWKKTTVKKKNLN 311 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~--------------------------~~~kT~v~~~t~n 311 (471)
....+.+.|+|+|++|+||...|..|.+||||++.+.+... ..++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 46778999999999999999999999999999999964321 2368999999999
Q ss_pred CeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 312 PEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 312 P~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|.|||+|.|.+..+..+.|.|+|||++ |++||++.++++++.. .....|++|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999998766789999999997 8899999999999983 345666654
No 59
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.71 E-value=7.1e-17 Score=138.02 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=95.8
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (471)
.|+|+|++|++|+..+..+.+||||++++++. ..++|++.. ++.||.|||.|.|.+.... ...|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~ 78 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP 78 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC
Confidence 48999999999999988899999999999872 234788764 6899999999999997663 5789999999998
Q ss_pred CCCCCeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEE
Q 012089 340 VGGHDRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVV 388 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l 388 (471)
.++|++||++.++|.++..+.. ...|++|... +++..|.|++
T Consensus 79 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~-------~g~~~G~~~~ 125 (125)
T cd04051 79 SLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP-------SGKPQGVLNF 125 (125)
T ss_pred CCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC-------CCCcCeEEeC
Confidence 8899999999999999986543 3577777542 3778899874
No 60
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=3.1e-17 Score=141.74 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=90.6
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....+.|+|+|++|+||+..|..|.+||||++++.++. ..+++|+++++++||+|||+|.|.+.. .....|.|+
T Consensus 9 ~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 9 SYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred EEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3555678999999999999999988999999999996543 335689999999999999999999864 346789999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||+|..+++++||++.++... .+...+.|.++..
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 9999999999999999997664 3344445555443
No 61
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-17 Score=166.34 Aligned_cols=169 Identities=24% Similarity=0.294 Sum_probs=136.3
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
..|.|+|.+|+||++.+..|.+||||.|.++.+.. .||.++.+++.|.|.|.|+|.+... -+.|.|-|||+| +++|
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v--~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D 80 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV--CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRD 80 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhh--hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccc
Confidence 45899999999999999999999999999997654 5899999999999999999999754 368999999999 9999
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCcc
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEE 423 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
+.||.+.+.-++|....+.+-|+.|.. .++ +...+|+|++++.+.+...+
T Consensus 81 ~~IGKvai~re~l~~~~~~d~W~~L~~-VD~----dsEVQG~v~l~l~~~e~~~~------------------------- 130 (800)
T KOG2059|consen 81 DIIGKVAIKREDLHMYPGKDTWFSLQP-VDP----DSEVQGKVHLELALTEAIQS------------------------- 130 (800)
T ss_pred cccceeeeeHHHHhhCCCCccceeccc-cCC----ChhhceeEEEEEEeccccCC-------------------------
Confidence 999999999999987777888888754 333 36789999999999873211
Q ss_pred ccCcceEEEEEEeeeecC-CC-CCCCCcEEEEEEcCeee----eeC---CCCCCcCC
Q 012089 424 ALSGAGLLSVLVQGAEDV-EG-ENHNNPYAIILYKGDKK----RTK---KNSRPCLE 471 (471)
Q Consensus 424 ~~~~~g~L~V~v~~Ak~L-~~-~~~~dpyv~v~~~~~~~----kTk---~t~nP~Wn 471 (471)
.-+...+.+++++ |. .+.+||||+++..+..+ +|+ +|.||.||
T Consensus 131 -----~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 -----SGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred -----CcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 1122223344444 43 46799999999876554 676 99999996
No 62
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.70 E-value=7.1e-17 Score=134.79 Aligned_cols=101 Identities=30% Similarity=0.410 Sum_probs=86.4
Q ss_pred EEEEEEEccccccCcc-CCCCCcEEEEEEcCccccceeeeeecCCCCCeE-eeEEEEEeecC--CCCeEEEEEEEcCCCC
Q 012089 266 LHVKVVRASKLLKKDF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVKEP--ESQILQLQVFDWDKVG 341 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~-~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~--~~~~L~v~v~d~d~~~ 341 (471)
|+|+|++|++|+.++. .|.+||||++++++. .++|+++++++||.| ||+|.|.+... ..+.|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~---~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST---TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe---eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999999884 688999999999863 458999999999999 99999998753 2468999999999999
Q ss_pred CCCeeEEEEEECcccCC---CCceEEEEecc
Q 012089 342 GHDRLGMQLVPLKLLTP---HETKEFTLDLL 369 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~---~~~~~~~~~l~ 369 (471)
+|++||++.+++.++.. ......|++|.
T Consensus 78 ~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 99999999999999986 23455677664
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.70 E-value=9.2e-17 Score=143.21 Aligned_cols=110 Identities=34% Similarity=0.326 Sum_probs=93.1
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~ 333 (471)
...+.|.|+|+|++|+||+..+..|.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34468999999999999999998899999999998643 2345799999999999999999998532 234579999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEec
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDL 368 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l 368 (471)
|||++.+++|++||++.+++.++........|+++
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 99999999999999999999999876666777765
No 64
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=1e-16 Score=136.93 Aligned_cols=104 Identities=36% Similarity=0.555 Sum_probs=90.2
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeec-CCCCCeEeeEEEEEeecC---CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKK-KNLNPEWNENFKLVVKEP---ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~---~~~~L~v~v~d~d~ 339 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. ++|++.+ ++.||.|||+|.|.+..+ ..+.|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~---~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE---RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe---eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999998888999999999997654 3777776 489999999999999876 25789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
.++|++||++.+++.++..+.....|+.+.+
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 8899999999999999987766677777644
No 65
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=1e-16 Score=136.81 Aligned_cols=120 Identities=29% Similarity=0.420 Sum_probs=95.5
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
+|+|+|++|++|+..|..|.+||||++++++... ..+|+++++++||.|||+|.|.+..+..+.|.|+|||++..++|+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 4789999999999999999999999999987653 347888889999999999999987766789999999999999999
Q ss_pred eeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 345 RLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+||++.++|++..-. .++.+..+.. .....|.++.+-++.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLPP--------TYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCCC--------cccccCceecCcccCc
Confidence 999999999876542 2222322211 1335677777766655
No 66
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=7.5e-16 Score=132.99 Aligned_cols=118 Identities=24% Similarity=0.374 Sum_probs=95.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccc----------cceeeeeecCCCCCeE-eeEEEEEeecCCCCeEEEE
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL----------PWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQ 333 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~----------~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~v~ 333 (471)
+..|++++|+||+ ++..|++||||++++.+... ..++|+++++++||+| ||+|.|.+. ..+.|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEE
Confidence 4678999999998 67789999999999975442 2579999999999999 999999985 35689999
Q ss_pred EEEcCCCCC---CCeeEEEEEECcccCCCC---ceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 334 VFDWDKVGG---HDRLGMQLVPLKLLTPHE---TKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 334 v~d~d~~~~---d~~lG~~~i~L~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
|||++..++ +++||++.+++.++..+. ....++++.++. .....+|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----PTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----CCCcEEEEEEEEe
Confidence 999875443 799999999999997553 355777776543 2467889998875
No 67
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=7.1e-17 Score=139.46 Aligned_cols=111 Identities=25% Similarity=0.322 Sum_probs=90.9
Q ss_pred cccCCceEEEEEEEEccccccCcc--CCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQ 331 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~ 331 (471)
.+....|.|.|+|++|+||+..|. .+.+||||++++.++ +..++||+++++++||+|||+|.|.+... ....|.
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~ 88 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVE 88 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEE
Confidence 355567899999999999999883 355999999999875 33467899999999999999999998742 356899
Q ss_pred EEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 332 LQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 332 v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|+|||+|.++++++||++.+++.. .+.+.+.|.++..
T Consensus 89 ~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 89 LEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 999999999999999999999975 3444556655543
No 68
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.68 E-value=2.5e-16 Score=137.45 Aligned_cols=93 Identities=45% Similarity=0.708 Sum_probs=84.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
.|.|+|+|++|++|+..+. +.+||||+++++++. ++|++++++.||.|||+|.|.+.++ ...+.|+|||++.+++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~---~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~ 75 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQK---VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSK 75 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEE---EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCC
Confidence 4899999999999998887 899999999998654 4899999999999999999999876 6789999999999999
Q ss_pred CCeeEEEEEECcccCCCC
Q 012089 343 HDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~~ 360 (471)
|++||++.+++.++....
T Consensus 76 dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 76 DDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCEEEEEEEEHHHhhhhh
Confidence 999999999999987653
No 69
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.68 E-value=9e-17 Score=138.96 Aligned_cols=111 Identities=34% Similarity=0.402 Sum_probs=92.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|.|+|++|+||+..|..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+... ....|.|+
T Consensus 7 ~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 7 MYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 3556679999999999999999988999999999997542 3456899999999999999999998643 35689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++..++|++||++.+++... ++....|+++..
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 99999988999999999999863 334456666544
No 70
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=3.6e-16 Score=131.35 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=81.7
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
+.|.|+|++|++|+..+ ..||||++.+++++ .+|++.++ .||.|||.|.|.+.+.. ..|.++|||++.+ .|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k---~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVK---STTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WD 72 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEE---eEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CC
Confidence 68999999999997654 56999999998754 37888777 49999999999997754 4599999999854 99
Q ss_pred CeeEEEEEECcccCCCCce--EEEEecccc
Q 012089 344 DRLGMQLVPLKLLTPHETK--EFTLDLLKH 371 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~--~~~~~l~~~ 371 (471)
|+||++.++|+++..+... ..|++|...
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999998865443 577777643
No 71
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.67 E-value=3.3e-16 Score=135.33 Aligned_cols=101 Identities=35% Similarity=0.511 Sum_probs=87.5
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecC----CCCeE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L 330 (471)
+....+.|+|+|++|++|+..+..|.+||||++++.+.. ...++|+++++|+||.|||+|.|.+... ....|
T Consensus 11 y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 11 YRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred EcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 445568899999999999999888999999999997543 3457999999999999999999998752 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCCC
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~~ 359 (471)
.++|||++..++|++||++.++|+++..-
T Consensus 91 ~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 91 LFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 99999999999999999999999998743
No 72
>PLN03008 Phospholipase D delta
Probab=99.67 E-value=5.2e-16 Score=164.40 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=109.2
Q ss_pred CceEEEEEEEEccccccCcc------------------------------------------CCCCCcEEEEEEcCcccc
Q 012089 262 PVGILHVKVVRASKLLKKDF------------------------------------------LGTSDPYVKLSLTGEKLP 299 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~------------------------------------------~g~~DPyv~v~l~~~~~~ 299 (471)
-.|.|.++|.+|++|+.+|. .+++||||+|.+++++
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r-- 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT-- 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc--
Confidence 35889999999998875321 2467999999997654
Q ss_pred ceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCC
Q 012089 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKD 379 (471)
Q Consensus 300 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~ 379 (471)
..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.+||+++..+...+.|+++..... +.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----kp 163 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASG----KP 163 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCC----CC
Confidence 348999999999999999999998764 58999999999986 5899999999999999999999999977543 23
Q ss_pred CccceEEEEEEEEEeccCCc
Q 012089 380 MKQRGKIVVELTYVPFKEDS 399 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~ 399 (471)
.+..|+|++++.|.|+.++.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 56678999999999998765
No 73
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=3.9e-16 Score=132.30 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=89.8
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
|.|+|+|++|++|+..+..+.+||||++++++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..++|
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~--~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d 77 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV--KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKD 77 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE--eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCC
Confidence 7899999999999999988999999999997542 35889999999999999999988764 47899999999999999
Q ss_pred CeeEEEEEECcccCCCCceEEEEeccc
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
++||++.+++.++..+ ..+.|+.+..
T Consensus 78 ~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 78 RSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9999999999999876 4566666543
No 74
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=4.7e-16 Score=136.33 Aligned_cols=93 Identities=35% Similarity=0.612 Sum_probs=81.4
Q ss_pred EEEEEEEEccccccCccCC--------------CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCe
Q 012089 265 ILHVKVVRASKLLKKDFLG--------------TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQI 329 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g--------------~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~ 329 (471)
.|+|+|++|++|+.+|..+ .+||||++.+++.+. +|++++++.||+|||+|.|.+..+. .+.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~---kT~v~~~t~nPvWNE~f~f~v~~p~~~~~ 77 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV---KTSVKKNSYNPEWNEQIVFPEMFPPLCER 77 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee---ecceEcCCCCCCcceEEEEEeeCCCcCCE
Confidence 3789999999999988543 689999999997654 8999999999999999999976443 568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 012089 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 330 L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
|.|+|||+|..++|++||++.+++.++....
T Consensus 78 l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 78 IKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 9999999999999999999999999987653
No 75
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=6.6e-16 Score=134.06 Aligned_cols=110 Identities=30% Similarity=0.403 Sum_probs=90.3
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....|.|+|+|++|+||+..+..|.+||||++++.+ .....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 9 ~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 9 CYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 35567799999999999999999889999999999853 23345689999999999999999999763 235689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++.+++|++||++.+++.+. +...+.|.++.
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~ 122 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDML 122 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC--CchHHHHHHHH
Confidence 99999999999999999999876 33344555544
No 76
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=6.4e-16 Score=131.15 Aligned_cols=100 Identities=31% Similarity=0.442 Sum_probs=87.2
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC----CC
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK----VG 341 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~----~~ 341 (471)
.++|++|+..+..|.+||||++++.+.. ...++|+++++++||.|||+|.|.+.....+.|.++|||++. .+
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 4789999999989999999999998754 224699999999999999999998765556789999999997 78
Q ss_pred CCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
+|++||++.+++.++..+.....+++|.
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 9999999999999999887777888773
No 77
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=7.5e-16 Score=133.61 Aligned_cols=106 Identities=30% Similarity=0.399 Sum_probs=91.3
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCc-cccceeeeeecCCCCCeEeeEEEEEeecC---------------CCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-KLPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQI 329 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~ 329 (471)
|+|+|++|++|+.+ ..|.+||||++++++. ....++|++++++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 7789999999999842 22346899999999999999999998765 4568
Q ss_pred EEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccccc
Q 012089 330 LQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHT 372 (471)
Q Consensus 330 L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~ 372 (471)
|.|+|||++..+++++||++.+++.++........|++|.+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 9999999998889999999999999998776778888887653
No 78
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.66 E-value=1.8e-16 Score=137.59 Aligned_cols=109 Identities=31% Similarity=0.395 Sum_probs=89.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v 334 (471)
+....+.|.|+|++|+||+..|..|.+||||++++.+.. ...++|++++++.||.|||+|.|.+... ....|.|+|
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v 89 (136)
T cd08404 10 YQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLV 89 (136)
T ss_pred EeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 445678999999999999999989999999999996432 3356899999999999999999998642 345799999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++.++++++||++.+++.. .+.....|.++.
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred EECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 999999999999999999988 333445566553
No 79
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.65 E-value=6.3e-16 Score=134.12 Aligned_cols=111 Identities=22% Similarity=0.320 Sum_probs=91.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v 332 (471)
.+....+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+.. .....|.|
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4667789999999999999999988999999999997532 235689999999999999999999874 34679999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
+|||++.++++++||++.+++.....+ ..+.|..+.
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~-~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGEE-EEEHWNEMK 124 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCch-HHHHHHHHH
Confidence 999999999999999999988754432 234555543
No 80
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.65 E-value=1.1e-15 Score=130.16 Aligned_cols=109 Identities=37% Similarity=0.499 Sum_probs=92.2
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQL 332 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v 332 (471)
.++...+.|+|+|++|++|+..+..+.+||||++++.+. ....++|++++++.||.|||+|.|.... .....+.+
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 355667899999999999999888899999999998543 2345799999999999999999996332 22568999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEe
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLD 367 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~ 367 (471)
+|||++.. .+++||++.++|+++..++.+++++.
T Consensus 89 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 89 LVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred EEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 99999988 88999999999999999888888765
No 81
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=3.5e-16 Score=133.36 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=88.0
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCC-CCeEeeEEEEEeecCC-CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNL-NPEWNENFKLVVKEPE-SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~-nP~wne~f~f~v~~~~-~~~L~v~v 334 (471)
+....|.|+|+|++|+||++.+..+.+||||++++.. .+..++||+++++|+ ||.|||+|.|.+.... .-.|.++|
T Consensus 9 Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 9 FQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred ecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE
Confidence 5566799999999999999876567789999999854 344567999999996 6999999999997533 45788999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||++..+++++||++.++.++.. +...+.|.++.
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 99999899999999999997643 22345665553
No 82
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=2.8e-15 Score=128.07 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=93.8
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d 343 (471)
-.|+|+|++|+ |...+..+.+||||+++++++ ..++|++++++.||.|||+|.|.+.. .+.|.|+|||++..+.|
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~ 76 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKAD 76 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCC
Confidence 36899999998 555555789999999999865 34689999999999999999999863 57899999999999899
Q ss_pred CeeEEEEEECcccCCCCc-----eEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHET-----KEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~-----~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
++||++.++|.++..+.. ...++++....+ .+.+..|+|++++
T Consensus 77 ~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~G~~~~~~ 124 (125)
T cd04021 77 VLLGEASLDLSDILKNHNGKLENVKLTLNLSSENK----GSSVKVGELTVIL 124 (125)
T ss_pred cEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCC----CcceeeeeEEEEe
Confidence 999999999999875432 234666653211 1357789998875
No 83
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.65 E-value=1.3e-15 Score=127.30 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=85.5
Q ss_pred cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-
Q 012089 281 FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH- 359 (471)
Q Consensus 281 ~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~- 359 (471)
.+|.+||||+++++++. .++|++++++.||.|||+|.|.+.+.....|.|+|||++.. +|++||++.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~--~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~ 85 (111)
T cd04052 9 KTGLLSPYAELYLNGKL--VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDAT 85 (111)
T ss_pred cCCCCCceEEEEECCEE--EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhh
Confidence 46889999999998653 35889999999999999999999876677899999999988 899999999999998543
Q ss_pred CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 360 ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 360 ~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.....|++|.. ...|+|++++.|.|
T Consensus 86 ~~~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 86 SVGQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred hccceeEECCC----------CCCCEEEEEEEEec
Confidence 33467887742 35799999999998
No 84
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.65 E-value=3.1e-16 Score=135.74 Aligned_cols=110 Identities=35% Similarity=0.493 Sum_probs=89.4
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|++.|..|.+||||++++.+. ....++|++++++.||.|||+|.|.+... ....|.|+
T Consensus 8 ~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 8 CYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred EEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 355677999999999999999999999999999998543 33456899999999999999999988532 23569999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++..+++++||++.+++... +.....|.++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~~ 121 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEML 121 (134)
T ss_pred EEECCCCCCCceeEEEEECCCCC--CchHHHHHHHH
Confidence 99999999999999999998733 33344555543
No 85
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.5e-15 Score=127.09 Aligned_cols=98 Identities=28% Similarity=0.353 Sum_probs=83.1
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~ 339 (471)
-.|+|+|++|++|+ .|.+||||++++++++ ++|++++++.||.|||+|.|.+..+. ...|.|+|||++.
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQK---KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCEe---eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 35899999999998 4789999999999764 48999999999999999999986432 4689999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCc---eEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHET---KEFTLDL 368 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~---~~~~~~l 368 (471)
+++|++||++.++|+++..+.. ...|++|
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L 108 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLL 108 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEe
Confidence 8899999999999999976533 3456665
No 86
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.64 E-value=5.8e-16 Score=134.39 Aligned_cols=110 Identities=35% Similarity=0.492 Sum_probs=89.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC--ccccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG--EKLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|+..+..|.+||||++++.+ .....++|+++++++||.|||+|.|.+... ....|.|+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 46667899999999999999999899999999999964 233456899999999999999999998633 23479999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++.+++|++||++.+++... +.....|.++.
T Consensus 89 v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~ 122 (136)
T cd08402 89 VLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDML 122 (136)
T ss_pred EEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHH
Confidence 99999999999999999999764 33334455543
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=1.5e-15 Score=131.47 Aligned_cols=111 Identities=26% Similarity=0.400 Sum_probs=86.9
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~ 333 (471)
.+....|.|+|+|++|++|+..|..|.+||||++++.+. ....++|+++++|.||.|||+|.|.+... ....|.|+
T Consensus 8 ~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 8 NYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred EECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 355567999999999999999998899999999998442 23456899999999999999999998532 24479999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
|||++..+++++||++.+.......+ ....|..+.
T Consensus 88 V~d~d~~~~~~~iG~~~l~~~~~~~~-~~~~W~~l~ 122 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQYSSGPS-ETNHWRRML 122 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcCccCCch-HHHHHHHHH
Confidence 99999999999999998765333322 234454443
No 88
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=4.2e-16 Score=135.26 Aligned_cols=112 Identities=27% Similarity=0.288 Sum_probs=92.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
.+....+.|.|+|++|+||+..+ .+.+||||++++.+. ....++|++++++.||.|||+|.|.+.. .....|.|+
T Consensus 9 ~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 9 TYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred EECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 35556789999999999999988 788999999998754 2245689999999999999999999863 335689999
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|||++..+++++||++.++......+...+.|.++..
T Consensus 88 V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 9999999999999999999776665655666666544
No 89
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.63 E-value=9.2e-15 Score=126.89 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=100.1
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVG 341 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~ 341 (471)
-...|.|.|++|++|+.++ +|||.+.+++... .||+++.++.||.|+|.|.|..... ...+.|.||..+...
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~v--aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~ 80 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLY--ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKK 80 (146)
T ss_pred EEEEEEEEEEEccCCCCcC-----CceEEEEECCEEE--EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcc
Confidence 4577999999999999865 8999999998654 5899999999999999999975433 467999998765322
Q ss_pred ----CCCeeEEEEEECcccCCCCceEEEEecccccCCCC---CCCCccceEEEEEEEEEec
Q 012089 342 ----GHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISD---PKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 342 ----~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~G~l~l~l~y~p~ 395 (471)
++++||.+.||+.++..+...+.|+++.......+ ....+..++|+++++|.+.
T Consensus 81 ~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 81 KKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 57899999999999999888899999876422110 0012456899999999984
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=8.8e-15 Score=121.40 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=75.5
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc------
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW------ 337 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~------ 337 (471)
|+|+|++|+||+ +.+||||++++++.. ...++|+++++|+||+|||+|.|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 689999999996 568999999997642 345799999999999999999999963 67999999998
Q ss_pred -CCCCCCCeeEEEEEECc--ccCCCCceEEEEe
Q 012089 338 -DKVGGHDRLGMQLVPLK--LLTPHETKEFTLD 367 (471)
Q Consensus 338 -d~~~~d~~lG~~~i~L~--~l~~~~~~~~~~~ 367 (471)
|..+.|+++|++.+.|. .+.....+...+.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~ 106 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVIS 106 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEE
Confidence 45678999988887774 4444444444443
No 91
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.61 E-value=1.4e-14 Score=122.21 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=87.9
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCCC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGGH 343 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~d~d~~~~d 343 (471)
|+|+|++|++|+.. |.+||||++++++.. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~--~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVE--VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEE--eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCe
Confidence 78999999999976 789999999998643 358888888 99999999999987543 34678888888766566
Q ss_pred CeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 344 DRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
..+|.+. +..+..+...+.|++|.+.. ......|+|++++.|
T Consensus 76 ~~~g~v~--l~~~~~~~~~~~w~~L~~~~-----~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVA--LSKLDLGQGKDEWFPLTPVD-----PDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEE--ecCcCCCCcceeEEECccCC-----CCCCcCceEEEEEEC
Confidence 6666654 55555566678898886531 124678999999986
No 92
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=6.9e-15 Score=126.80 Aligned_cols=106 Identities=35% Similarity=0.501 Sum_probs=91.4
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecC-CCCeEEEEEEEcCCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDWDKV 340 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~v~v~d~d~~ 340 (471)
+.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ..+.|.++|||++..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~ 92 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT 92 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence 889999999999999888889999999999742 22356899999999999999999998754 256899999999988
Q ss_pred CCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 341 GGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
+++++||++.++|.++... ....|++|..
T Consensus 93 ~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 93 TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8999999999999999855 6678888754
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.60 E-value=2.7e-14 Score=122.46 Aligned_cols=119 Identities=30% Similarity=0.414 Sum_probs=94.4
Q ss_pred EEEEEEEEccccccCc--cCCCCCcEEEEEEcCcc---ccceeeeeecCCC-CCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKD--FLGTSDPYVKLSLTGEK---LPWKKTTVKKKNL-NPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d--~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~-nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
.|+|+|++|+||+..+ ..+.+||||++++.+.. ...++|+++.++. ||.|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 6899999999999887 57899999999996432 2456898877765 9999999999998766668999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
.. ++++||++.++++++..+. .+++|... .......|.|.+.++.
T Consensus 83 ~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~-----~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SG-DDDFLGQACLPLDSLRQGY---RHVPLLDS-----KGEPLELSTLFVHIDI 127 (128)
T ss_pred CC-CCcEeEEEEEEhHHhcCce---EEEEecCC-----CCCCCcceeEEEEEEE
Confidence 87 8999999999999996542 34555432 1113557899988865
No 94
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.59 E-value=1.7e-15 Score=131.00 Aligned_cols=110 Identities=35% Similarity=0.403 Sum_probs=92.6
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v 334 (471)
+....+.|.|+|++|+||+..+..+.+||||++++.+.. ...++|++++++.||.|||+|.|.+.... ...|.|+|
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v 88 (134)
T cd00276 9 YLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITV 88 (134)
T ss_pred eeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence 445568999999999999998888999999999997642 33568999999999999999999987543 57899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
||++..+++++||++.+++++ .+.....|+++..
T Consensus 89 ~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 89 VDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred EecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 999988899999999999999 4445667777654
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=9.7e-15 Score=121.84 Aligned_cols=96 Identities=32% Similarity=0.539 Sum_probs=80.0
Q ss_pred EEEEccccccCccCCCCCcEEEEEEcCcc---ccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCC
Q 012089 269 KVVRASKLLKKDFLGTSDPYVKLSLTGEK---LPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVG 341 (471)
Q Consensus 269 ~v~~a~~L~~~d~~g~~DPyv~v~l~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~~~ 341 (471)
-.++|++|+..|..|.+||||++++.++. ...++|+++++++||+|| +|.|.+.... .+.|.++|||++..+
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~ 83 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG 83 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC
Confidence 35699999999999999999999987642 335799999999999999 6888764322 578999999999999
Q ss_pred CCCeeEEEEEECcccCCCCceEEE
Q 012089 342 GHDRLGMQLVPLKLLTPHETKEFT 365 (471)
Q Consensus 342 ~d~~lG~~~i~L~~l~~~~~~~~~ 365 (471)
+|++||++.++++++......++.
T Consensus 84 ~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 84 KHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred CCcEEEEEEEEHHHHhcCCCceEE
Confidence 999999999999999866555443
No 96
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.58 E-value=8.9e-16 Score=148.96 Aligned_cols=109 Identities=32% Similarity=0.481 Sum_probs=92.8
Q ss_pred CCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecC-CCCeEEEEEEEc
Q 012089 261 KPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEP-ESQILQLQVFDW 337 (471)
Q Consensus 261 ~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~L~v~v~d~ 337 (471)
.....|+|+|.+|+||.++|.+|.|||||++.+-++. ..+++|++++.++||+|||+|.|.+... ....|.++|||+
T Consensus 177 ~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDW 256 (683)
T KOG0696|consen 177 IKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDW 256 (683)
T ss_pred ecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecc
Confidence 3456789999999999999999999999999997653 3356899999999999999999998743 367899999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
|+-+++||+|..++.+++|.... ..-|+.|+.
T Consensus 257 DrTsRNDFMGslSFgisEl~K~p-~~GWyKlLs 288 (683)
T KOG0696|consen 257 DRTSRNDFMGSLSFGISELQKAP-VDGWYKLLS 288 (683)
T ss_pred cccccccccceecccHHHHhhcc-hhhHHHHhh
Confidence 99999999999999999998663 445666543
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.51 E-value=7.4e-14 Score=110.10 Aligned_cols=85 Identities=36% Similarity=0.603 Sum_probs=76.6
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|+|+|++|+||+..+..+.+||||++++.+.....++|+++.++.+|.|||+|.|.+.....+.|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 78999999999998888899999999998755445799999999999999999999887777779999999999988999
Q ss_pred eEEEE
Q 012089 346 LGMQL 350 (471)
Q Consensus 346 lG~~~ 350 (471)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 98
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.50 E-value=6.4e-14 Score=161.57 Aligned_cols=123 Identities=21% Similarity=0.371 Sum_probs=104.7
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-CCeEEEEEEEc
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-SQILQLQVFDW 337 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~L~v~v~d~ 337 (471)
+..-.|.|+|+|++|+||. +..|.+||||++.++++.. +||++++++.||+|||.|.|.+.++. ++.++++|||+
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~--~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPP--RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred HhhCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCc--ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 4556899999999999998 4468999999999996532 38999999999999999999998765 46799999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceE---EEEEEEEEe
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGK---IVVELTYVP 394 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~---l~l~l~y~p 394 (471)
|.+++| .+|.+.+++.++..+.....|++|.. +++..|+ |++++.|.+
T Consensus 2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~--------~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLNP--------ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCC-CCceEEEEHHHHhcCceeeeeeecCc--------ccccCCCcceEEEEEEecC
Confidence 988554 89999999999998888888888854 2455677 999998864
No 99
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=3.4e-12 Score=108.90 Aligned_cols=95 Identities=33% Similarity=0.348 Sum_probs=80.4
Q ss_pred EEEEEEEccccccCc--cCC--CCCcEEEEEEcCccccceeeeeecCCCC--CeEeeEEEEEeecC--------------
Q 012089 266 LHVKVVRASKLLKKD--FLG--TSDPYVKLSLTGEKLPWKKTTVKKKNLN--PEWNENFKLVVKEP-------------- 325 (471)
Q Consensus 266 L~V~v~~a~~L~~~d--~~g--~~DPyv~v~l~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~~-------------- 325 (471)
|+|.|.+|++++..+ ..| .+||||+..+.+.....++|.++.+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 799999999966433 356 4999999999986555679999999999 99999999987641
Q ss_pred ---------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCC
Q 012089 326 ---------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 326 ---------~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
....|.++|||+|.+++|++||++.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 14689999999999999999999999999887653
No 100
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.3e-12 Score=132.03 Aligned_cols=127 Identities=27% Similarity=0.397 Sum_probs=103.7
Q ss_pred cCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCC
Q 012089 260 KKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
..-...++++|++|.+|..+|..|++||||...++..+. +|+++...+||+|||.|.|..++. +..+++.|||.|.
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkr---rtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~ 366 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKR---RTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDN 366 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecccch---hhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcc
Confidence 345678999999999999999999999999999986554 899999999999999999999875 5789999999874
Q ss_pred C-----------CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 340 V-----------GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 340 ~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
. ..|||+|+..|.++.+..+ .+.|+.|.++.+. ...+|.|++.++.--..+
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdk-----savsgairlhisveikge 428 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDK-----SAVSGAIRLHISVEIKGE 428 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccch-----hhccceEEEEEEEEEcCc
Confidence 3 3589999999999988754 5567777665442 567898888777654433
No 101
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.9e-13 Score=126.30 Aligned_cols=181 Identities=29% Similarity=0.397 Sum_probs=135.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEE--eecC-CCCeEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLV--VKEP-ESQILQLQ 333 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~--v~~~-~~~~L~v~ 333 (471)
+......+..++..|++|++++.++..|||++..+++. +..+.+|++..+++||.|||+-... ..+. ....+++.
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhhee
Confidence 45566788999999999999999999999999999764 3334578888999999999765443 3322 24578899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccC--CCCCCCCccceEEEEEEEEEeccCCccccccccccccc
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTN--ISDPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSR 411 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~ 411 (471)
|.|.+.+..++++|+..+++..+.+.+.+.+..-|...+. ..+....+.+|++.+++.|-.
T Consensus 168 vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s----------------- 230 (362)
T KOG1013|consen 168 VCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS----------------- 230 (362)
T ss_pred eccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc-----------------
Confidence 9999999999999999999999988765443332222222 122222467899999998743
Q ss_pred CCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeee-----eeC---CCCCCcCC
Q 012089 412 KGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 412 ~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-----kTk---~t~nP~Wn 471 (471)
...-+.|++.++..|.. ++.+||||+.++..+.. ||+ +|.||++|
T Consensus 231 ---------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd 286 (362)
T KOG1013|consen 231 ---------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFD 286 (362)
T ss_pred ---------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccc
Confidence 34567788888888875 57899999999864432 554 89999986
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.4e-11 Score=99.72 Aligned_cols=96 Identities=45% Similarity=0.658 Sum_probs=82.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHD 344 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~ 344 (471)
.|.|+|++|++|......+..+|||++++.+.....++|+++.++.||.|||+|.|.+.....+.|.++|||.+..+.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDD 80 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCc
Confidence 36899999999998776578899999999865323458999999999999999999998765789999999999877789
Q ss_pred eeEEEEEECcccCCCC
Q 012089 345 RLGMQLVPLKLLTPHE 360 (471)
Q Consensus 345 ~lG~~~i~L~~l~~~~ 360 (471)
++|.+.+++.++..+.
T Consensus 81 ~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 81 FIGQVTIPLSDLLLGG 96 (101)
T ss_pred eeEEEEEEHHHcccCc
Confidence 9999999999987664
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=133.44 Aligned_cols=129 Identities=30% Similarity=0.420 Sum_probs=108.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcC
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWD 338 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d 338 (471)
+-.+.|.|+|.+..|.||+..|.+|.+||||++.+.+++ .++|+++++|+||+|||.|...+.+-....+.+.|+|+|
T Consensus 1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~--vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS--VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred eecccCcEEEEEeccCCCcccccCCCCCceEEEEeccee--cccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence 455789999999999999999999999999999999765 469999999999999999999998766789999999999
Q ss_pred CCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 339 KVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 339 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
...+++.||.+.++|..+..+.......++... ......|.++....+-+.
T Consensus 1113 ~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk------~~~~~~g~~~~~~~~r~~ 1163 (1227)
T COG5038 1113 SGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK------TFIVLDGTLHPGFNFRSK 1163 (1227)
T ss_pred cCCCccccccccccHhhcCcCCccceeeeccCc------ceEecccEeecceecchh
Confidence 999999999999999999988777766665321 012456677776666553
No 104
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.26 E-value=4.6e-11 Score=96.27 Aligned_cols=99 Identities=44% Similarity=0.635 Sum_probs=82.4
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCe
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDR 345 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~ 345 (471)
|.|+|++|++|......+.++|||.+.+.+ ...++|+++.++.||.|||.|.|.+.......+.++||+.+..+.+++
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 78 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDF 78 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCce
Confidence 478999999998866667899999999987 223588999999999999999999986456789999999998877899
Q ss_pred eEEEEEECcccC-CCCceEEEE
Q 012089 346 LGMQLVPLKLLT-PHETKEFTL 366 (471)
Q Consensus 346 lG~~~i~L~~l~-~~~~~~~~~ 366 (471)
+|.+.+++.++. .......|+
T Consensus 79 ig~~~~~l~~l~~~~~~~~~~~ 100 (102)
T cd00030 79 LGEVEIPLSELLDSGKEGELWL 100 (102)
T ss_pred eEEEEEeHHHhhhcCCcCccee
Confidence 999999999987 444444444
No 105
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3e-11 Score=123.41 Aligned_cols=97 Identities=39% Similarity=0.535 Sum_probs=84.8
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQV 334 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v 334 (471)
+..+.|.|+|.|++|++|+.++..+.+||||++++... +..+++|.++++++||.|||+|.|.+.. ...-.+.++|
T Consensus 293 Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 293 YLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred eecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 56678999999999999999999999999999998654 3456799999999999999999998873 3355799999
Q ss_pred EEcCCCCCCCeeEEEEEECcc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKL 355 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~ 355 (471)
||+|.++++++||++.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 999999999999998887665
No 106
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.20 E-value=1.4e-10 Score=92.93 Aligned_cols=85 Identities=22% Similarity=0.422 Sum_probs=73.8
Q ss_pred HHHHHHHhh-hHH-HHHHHHHHHHHHHHHhh-ccCCceeeeEEEeEeeCCCCCCEEeEEEEEeC-CCCeEEEEeeeeEec
Q 012089 78 NRFLSDMWP-YLD-KAICANVRTTAQPIFDE-YSGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEPALRWAG 153 (471)
Q Consensus 78 N~~l~~~Wp-~~~-~~~~~~i~~~~~~~l~~-~~p~~~i~~i~~~~~~lG~~~P~i~~vr~~~~-~~~~~~le~~~~~~~ 153 (471)
|.+++|++- +++ +++.+.+++.++..|++ .+|+| +++|++++++||+.+|.|+++|+.+. .++++.+|+++.|.|
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~f-l~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G 79 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSF-LDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSG 79 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCc-cCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcC
Confidence 677888765 333 68899999999999998 47999 99999999999999999999999875 445699999999999
Q ss_pred CCcEEEEEEE
Q 012089 154 NPNIVLVLKL 163 (471)
Q Consensus 154 ~~~i~l~~~~ 163 (471)
+..+++++++
T Consensus 80 ~~~l~l~t~l 89 (91)
T PF10296_consen 80 GFSLTLETKL 89 (91)
T ss_pred CeEEEEEEEE
Confidence 9999998875
No 107
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=3.2e-10 Score=116.31 Aligned_cols=98 Identities=27% Similarity=0.448 Sum_probs=82.4
Q ss_pred ceEEEEEEEEcccccc-----CccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLK-----KDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~-----~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~ 335 (471)
...|+|+|++|++++. .+.....||||+|.+.+-. ...++|++..++.||.|||+|.|.+..++-..|+|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 4679999999998751 1223567999999997532 23457888889999999999999999888888999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
|+|..+.|+++|++.+|+..+..+-
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy 512 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI 512 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc
Confidence 9998888999999999999999885
No 108
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.12 E-value=1.9e-10 Score=95.93 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=48.8
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCCCCCCcEEEEEEcC----ee
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGENHNNPYAIILYKG----DK 459 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~----~~ 459 (471)
|+|+++++|.| ..+.|+|+|++|+||+..+.+||||++++.. .+
T Consensus 1 ~~l~fsL~Y~~--------------------------------~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k 48 (118)
T cd08677 1 PKLHYSLSYDK--------------------------------QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKE 48 (118)
T ss_pred CeEEEEEEEcC--------------------------------cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccE
Confidence 68999999988 5789999999999999777899999999964 23
Q ss_pred eeeC---CCCCCcCC
Q 012089 460 KRTK---KNSRPCLE 471 (471)
Q Consensus 460 ~kTk---~t~nP~Wn 471 (471)
+||+ +|+||+||
T Consensus 49 ~kT~v~rktlnPvfn 63 (118)
T cd08677 49 AQTALKKLALHTQWE 63 (118)
T ss_pred EEcceecCCCCCccc
Confidence 3676 99999998
No 109
>PLN02270 phospholipase D alpha
Probab=99.12 E-value=7e-10 Score=118.36 Aligned_cols=129 Identities=22% Similarity=0.375 Sum_probs=104.1
Q ss_pred ceEEEEEEEEccccccCc------------------cCCCCCcEEEEEEcCccccceeeeeecCC-CCCeEeeEEEEEee
Q 012089 263 VGILHVKVVRASKLLKKD------------------FLGTSDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVK 323 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d------------------~~g~~DPyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~ 323 (471)
.|.|.|+|.+|++|+..+ ..+.+||||.+.+++.+. .||+++.+. .||.|||+|.+++.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v--~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV--GRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE--EEEeecCCCCCCCccccceEEeec
Confidence 599999999999998631 125689999999997665 599999875 69999999999997
Q ss_pred cCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCCc
Q 012089 324 EPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKEDS 399 (471)
Q Consensus 324 ~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~~ 399 (471)
-.. ..+.|.|.|.|.++. .+||.+.+|..++..+...+.|+++..... +..+..-.|++++.|.|...++
T Consensus 85 h~~-~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~----~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 85 HMA-SNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDK----NPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred cCc-ceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCC----CcCCCCCEEEEEEEEEEcccCc
Confidence 654 689999999997755 599999999999999988889998865321 1123335999999999987764
No 110
>PLN02952 phosphoinositide phospholipase C
Probab=99.10 E-value=1.1e-09 Score=114.68 Aligned_cols=104 Identities=28% Similarity=0.390 Sum_probs=84.3
Q ss_pred ceEEEEEEEEccccccC------ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLLKK------DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~------d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
...|.|+|++|.+++.. +.....||||++.+-+-. ..+++|+++.++.||.|||+|.|.+..++-..++|+|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 46899999999987531 112345999999986531 2346899999999999999999999988777899999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
||+|..+.|+++|++.+|+..|..+-. +++|.
T Consensus 549 ~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~ 580 (599)
T PLN02952 549 REYDMSEKDDFGGQTCLPVSELRPGIR---SVPLH 580 (599)
T ss_pred EecCCCCCCCeEEEEEcchhHhcCCce---eEeCc
Confidence 999988899999999999999998853 55654
No 111
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.03 E-value=7.4e-11 Score=121.13 Aligned_cols=133 Identities=29% Similarity=0.521 Sum_probs=105.4
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc-------------------------ccc---ceeeeeecCCC
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE-------------------------KLP---WKKTTVKKKNL 310 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~-------------------------~~~---~~kT~v~~~t~ 310 (471)
.+.|.-.+.|.+.+|+||.++|.+|-||||+...+.+. ..+ .+-|+++++|+
T Consensus 109 ~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TL 188 (1103)
T KOG1328|consen 109 NKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTL 188 (1103)
T ss_pred CCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccC
Confidence 34455567788899999999999999999999877321 000 23588999999
Q ss_pred CCeEeeEEEEEeecCCCCeEEEEEEEcCCC---------------------------------C---CCCeeEEEEEECc
Q 012089 311 NPEWNENFKLVVKEPESQILQLQVFDWDKV---------------------------------G---GHDRLGMQLVPLK 354 (471)
Q Consensus 311 nP~wne~f~f~v~~~~~~~L~v~v~d~d~~---------------------------------~---~d~~lG~~~i~L~ 354 (471)
||.|+|.|.|.+.+..+..+.+.+||+|.- + .|||+|++.+||.
T Consensus 189 nPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~ 268 (1103)
T KOG1328|consen 189 NPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLA 268 (1103)
T ss_pred CcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchh
Confidence 999999999999998889999999998743 2 2799999999999
Q ss_pred ccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 355 LLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 355 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
++... +.+.|+.|.++.+ +.+.+|++++.+...-..+
T Consensus 269 EiP~~-Gld~WFkLepRS~-----~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 269 EIPPD-GLDQWFKLEPRSD-----KSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cCCcc-hHHHHhccCcccc-----cccccceEEEEEEEeeecc
Confidence 99866 4667777766533 4688999999997765433
No 112
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.99 E-value=4.7e-09 Score=109.90 Aligned_cols=99 Identities=24% Similarity=0.361 Sum_probs=82.1
Q ss_pred ceEEEEEEEEcccccc--C----ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLLK--K----DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~--~----d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
..+|.|+|+.+.+++. . +.....||||+|.+-+-. ...++|++..++.||.|||+|.|.+..++-..|+|+|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998742 1 222357999999996522 2345888989999999999999999988888999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~ 361 (471)
+|+|...+|+++|+..+|+..|..+-.
T Consensus 548 ~d~d~~~~ddfiGQ~~lPv~~Lr~GyR 574 (598)
T PLN02230 548 HEHDINEKDDFGGQTCLPVSEIRQGIH 574 (598)
T ss_pred EECCCCCCCCEEEEEEcchHHhhCccc
Confidence 999988899999999999999998853
No 113
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.96 E-value=4.4e-09 Score=110.15 Aligned_cols=121 Identities=26% Similarity=0.462 Sum_probs=92.2
Q ss_pred EEEEEEEEccccccCc----cCCCCCcEEEEEEcCcc--ccceeee-eecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 265 ILHVKVVRASKLLKKD----FLGTSDPYVKLSLTGEK--LPWKKTT-VKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d----~~g~~DPyv~v~l~~~~--~~~~kT~-v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
+|.|+|+++.++.... ....+||||.+++-+-+ ....+|+ +..++.||.|+|+|+|.+..|+-.-++|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999775432 22457999999986532 2245788 667899999999999999999888999999999
Q ss_pred CCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
|..++|||+|+..+|+.+|..+-.+. +|... ....-..-+|.+.+.+.
T Consensus 697 d~~~~ddF~GQ~tlP~~~L~~GyRhV---pL~~~-----~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIGKDDFIGQTTLPVSELRQGYRHV---PLLSR-----EGEALSSASLFVRIAIV 744 (746)
T ss_pred CCCCcccccceeeccHHHhhCceeee---eecCC-----CCccccceeEEEEEEEe
Confidence 99999999999999999999885433 33221 11123445677777664
No 114
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.95 E-value=1.6e-09 Score=93.66 Aligned_cols=57 Identities=23% Similarity=0.401 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC-----CCCCcEEEEEEcC
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE-----NHNNPYAIILYKG 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~-----~~~dpyv~v~~~~ 457 (471)
.|+|.++|+|.| .+++|.|+|++|+||... +.+||||++++..
T Consensus 1 ~Gel~~sL~Y~~--------------------------------~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~ 48 (138)
T cd08407 1 TGEVLLSISYLP--------------------------------AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKH 48 (138)
T ss_pred CCEEEEEEEEeC--------------------------------CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEc
Confidence 499999999998 578999999999999863 3489999999875
Q ss_pred ee-----eeeC---CCCCCcCC
Q 012089 458 DK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~~-----~kTk---~t~nP~Wn 471 (471)
+. +||+ ++.||+||
T Consensus 49 ~~~k~~kkkT~v~k~t~nPvfN 70 (138)
T cd08407 49 QNAKLKKKQTKRAKHKINPVWN 70 (138)
T ss_pred CCcccceeccceeeCCCCCccc
Confidence 42 2666 89999998
No 115
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.94 E-value=1.8e-09 Score=93.34 Aligned_cols=57 Identities=28% Similarity=0.535 Sum_probs=48.0
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.++++|.| ..+.|.|+|++|+||+. .+.+||||++++..+
T Consensus 1 ~G~i~~sL~Y~~--------------------------------~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~ 48 (136)
T cd08406 1 VGEILLSLSYLP--------------------------------TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDG 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCC
Confidence 399999999988 46799999999999986 468999999998543
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~k~kT~v~k~t~nP~~n 68 (136)
T cd08406 49 RKISKKKTSVKRDDTNPIFN 68 (136)
T ss_pred ccccccCCccccCCCCCeec
Confidence 23665 99999998
No 116
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.93 E-value=1.3e-08 Score=106.47 Aligned_cols=99 Identities=24% Similarity=0.366 Sum_probs=81.2
Q ss_pred ceEEEEEEEEccccc----cC--ccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEE
Q 012089 263 VGILHVKVVRASKLL----KK--DFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~----~~--d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v 334 (471)
...|+|+|+.+.+++ .. +.....||||+|.+.+-. ..+++|+++.++.||.|||+|.|.+..++-..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 457999999998753 11 122457999999996432 2346899999999999999999999888878999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCc
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHET 361 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~ 361 (471)
+|+|..+.|+++|++.+|+..|..+-.
T Consensus 531 ~d~D~~~~ddfigq~~lPv~~Lr~GyR 557 (581)
T PLN02222 531 HEYDMSEKDDFGGQTCLPVWELSQGIR 557 (581)
T ss_pred EECCCCCCCcEEEEEEcchhhhhCccc
Confidence 999988889999999999999998843
No 117
>PLN02228 Phosphoinositide phospholipase C
Probab=98.93 E-value=1.3e-08 Score=106.20 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=93.3
Q ss_pred eEEEEEEEEcccccc---C---ccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeE-eeEEEEEeecCCCCeEEEEE
Q 012089 264 GILHVKVVRASKLLK---K---DFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEW-NENFKLVVKEPESQILQLQV 334 (471)
Q Consensus 264 G~L~V~v~~a~~L~~---~---d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~~~~L~v~v 334 (471)
..|+|+|++|++|+. . +.....||||++.+.+- ....++|++++++.||.| ||+|.|.+..++-.-|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 479999999998731 1 12234799999998653 223468999888999999 99999999988878999999
Q ss_pred EEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 335 FDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 335 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|+|..+.|+++|++.+|+..|..+-. ..+|.... ...-...+|.+++.+.+
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~-----G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRA-----GKAYKNTRLLVSFALDP 562 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCC-----CCCCCCeEEEEEEEEcC
Confidence 999988899999999999999987743 23443211 11223467888888866
No 118
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.92 E-value=5.3e-10 Score=115.00 Aligned_cols=100 Identities=29% Similarity=0.442 Sum_probs=87.9
Q ss_pred ccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc----ccceeeeeecCCCCCeEeeEEEEEeecC----CCCeE
Q 012089 259 IKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK----LPWKKTTVKKKNLNPEWNENFKLVVKEP----ESQIL 330 (471)
Q Consensus 259 ~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~~L 330 (471)
+..+...|.|.|+.|+++.+-|.+|.|||||+|.+.+.. ....+|+++.+|+||+|+|+|+|.|... +...+
T Consensus 942 y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 942 YNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred eeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 556677899999999999999999999999999999864 2457999999999999999999999732 25689
Q ss_pred EEEEEEcCCCCCCCeeEEEEEECcccCC
Q 012089 331 QLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (471)
Q Consensus 331 ~v~v~d~d~~~~d~~lG~~~i~L~~l~~ 358 (471)
.|+|+|+|-.+.+||-|++.+.|+++..
T Consensus 1022 ~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1022 HFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred EEEeeccceecccccchHHHHhhCCCCC
Confidence 9999999999999999999999988753
No 119
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.91 E-value=3.6e-09 Score=90.27 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~ 458 (471)
+|+|+++++|.+ ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~ 48 (125)
T cd04029 1 SGEILFSLSYDY--------------------------------KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC
Confidence 599999999986 57899999999999975 368999999999532
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~~~kT~v~~~t~nP~wn 69 (125)
T cd04029 49 KSRQSKRKTSIKRNTTNPVYN 69 (125)
T ss_pred CccccceEeeeeeCCCCCccc
Confidence 34776 88999998
No 120
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.89 E-value=4.3e-09 Score=89.80 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
+|+|++++.|.+ ..+.|.|+|++|+||+. . +.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~ 48 (125)
T cd08393 1 QGSVQFALDYDP--------------------------------KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD 48 (125)
T ss_pred CcEEEEEEEEEC--------------------------------CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC
Confidence 599999999987 46799999999999986 2 57999999999532
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~~~~kT~v~~~t~nP~~n 69 (125)
T cd08393 49 KSNRGKRKTSVKKKTLNPVFN 69 (125)
T ss_pred CCccccccCccCcCCCCCccC
Confidence 24776 99999998
No 121
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.87 E-value=6.7e-09 Score=92.63 Aligned_cols=69 Identities=23% Similarity=0.398 Sum_probs=53.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
+|+|.++++|.|...+... .......|.|+|+|++|+||+. .+.+||||++++..
T Consensus 1 ~G~l~~~l~y~~~~~~~~~--------------------~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~ 60 (162)
T cd04020 1 RGELKVALKYVPPESEGAL--------------------KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDK 60 (162)
T ss_pred CceEEEEEEecCccccccc--------------------cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCC
Confidence 5999999999996543221 1122368999999999999986 36899999999842
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ +|.||+||
T Consensus 61 ~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 61 SKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CCCcceeCCccCCCCCCCCC
Confidence 334777 89999998
No 122
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.85 E-value=8.2e-09 Score=82.96 Aligned_cols=86 Identities=19% Similarity=0.338 Sum_probs=71.0
Q ss_pred EEEEEEEccccccCc---cCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 266 LHVKVVRASKLLKKD---FLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 266 L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
|+|+|.+|+++...+ ..+.+||||.+.+++.. +.||+. +.||.|||+|.|.+. ....+.+.|||... ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~--kaRTr~---srnd~WnE~F~i~Vd--k~nEiel~VyDk~~-~~ 72 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVE--RARTKP---SRNDRWNEDFEIPVE--KNNEEEVIVYDKGG-DQ 72 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEE--EEeccC---CCCCcccceEEEEec--CCcEEEEEEEeCCC-Ce
Confidence 679999999998877 57889999999999764 246655 589999999999995 46799999999963 45
Q ss_pred CCeeEEEEEECcccCCC
Q 012089 343 HDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~~ 359 (471)
.-.+|...+.++++..+
T Consensus 73 ~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 73 PVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ecceeeehhhHHHHHHH
Confidence 56799999999988754
No 123
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.85 E-value=7.6e-09 Score=88.53 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=48.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
.|+|.+++.|.+ ..+.|.|.|++|+||+. . +.+||||++++..+
T Consensus 1 ~G~i~~sl~Y~~--------------------------------~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~ 48 (128)
T cd08392 1 TGEIEFALHYNF--------------------------------RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD 48 (128)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC
Confidence 499999999987 46799999999999975 2 68999999998633
Q ss_pred -----eeeeC---CCCCCcCC
Q 012089 459 -----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 -----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~k~kT~v~~~t~nPvfN 69 (128)
T cd08392 49 KSHNSKRKTAVKKGTVNPVFN 69 (128)
T ss_pred CcccceeecccccCCCCCccc
Confidence 34777 89999998
No 124
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.81 E-value=1.3e-08 Score=88.73 Aligned_cols=58 Identities=28% Similarity=0.288 Sum_probs=48.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEE
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILY 455 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~ 455 (471)
....|+|.+++.|. .|.|.|+|++|+||+. .+.+||||++++
T Consensus 14 ~~~~G~l~lsl~y~----------------------------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~L 59 (146)
T cd04028 14 SPSMGDIQLGLYDK----------------------------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYL 59 (146)
T ss_pred CCCcceEEEEEEeC----------------------------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEE
Confidence 45689999999982 4689999999999975 257999999999
Q ss_pred cCe-----eeeeC---CCCCCcCC
Q 012089 456 KGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 456 ~~~-----~~kTk---~t~nP~Wn 471 (471)
..+ ++||+ +|+||+||
T Consensus 60 lp~~~~~~k~KT~v~kktlnPvfN 83 (146)
T cd04028 60 LEGKKCIAKKKTKIARKTLDPLYQ 83 (146)
T ss_pred ECCCccccceeceecCCCCCCccC
Confidence 543 34776 99999998
No 125
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.81 E-value=1.3e-08 Score=86.40 Aligned_cols=44 Identities=27% Similarity=0.418 Sum_probs=37.1
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
.+.|.|.|++|+||+. .+.+||||++++.+ .++||+ ++.||+||
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wn 65 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFN 65 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcc
Confidence 3689999999999986 46899999999974 234787 99999998
No 126
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.80 E-value=1.5e-08 Score=86.88 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=48.3
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~ 458 (471)
.|+|.+++.|.+ ..+.|+|+|++|+||+. . +.+||||++++...
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~ 49 (128)
T cd08388 2 LGTLFFSLRYNS--------------------------------EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE 49 (128)
T ss_pred CeEEEEEEEEEC--------------------------------CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC
Confidence 699999999987 46799999999999986 2 67899999998633
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~~kT~v~~~t~nP~wn 68 (128)
T cd08388 50 KEHKVKTRVLRKTRNPVYD 68 (128)
T ss_pred cCceeeccEEcCCCCCcee
Confidence 33777 89999998
No 127
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.79 E-value=1.6e-08 Score=86.33 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=49.4
Q ss_pred cceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-
Q 012089 382 QRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG- 457 (471)
Q Consensus 382 ~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~- 457 (471)
+.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 1 ~~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~ 48 (127)
T cd04030 1 PLGRIQLTIRYSS--------------------------------QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD 48 (127)
T ss_pred CCeEEEEEEEEeC--------------------------------CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC
Confidence 3699999999987 46899999999999986 36899999999863
Q ss_pred ----eeeeeC---CCCCCcCC
Q 012089 458 ----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ----~~~kTk---~t~nP~Wn 471 (471)
.+.||+ ++.||+||
T Consensus 49 ~~~~~~~kT~v~~~~~nP~wn 69 (127)
T cd04030 49 KSKSTRRKTSVKKDNLNPVFD 69 (127)
T ss_pred CCCCceEecccccCCCCCEEC
Confidence 334776 89999998
No 128
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.78 E-value=2e-08 Score=85.52 Aligned_cols=57 Identities=32% Similarity=0.400 Sum_probs=48.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~~~~--------------------------------~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~ 49 (125)
T cd04031 2 TGRIQIQLWYDK--------------------------------VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDR 49 (125)
T ss_pred cEEEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCC
Confidence 599999999987 56899999999999986 35799999999975
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ +|.||+||
T Consensus 50 ~~~~~~kT~v~~~t~nP~wn 69 (125)
T cd04031 50 SEKSKRRTKTVKKTLNPEWN 69 (125)
T ss_pred CccccccccccCCCCCCccc
Confidence 234776 89999998
No 129
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.76 E-value=1.8e-08 Score=87.33 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC--CCCCCcEEEEEEcCe--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-- 458 (471)
.|+|+++++|.| ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~i~~sl~y~~--------------------------------~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~ 48 (137)
T cd08409 1 LGDIQISLTYNP--------------------------------TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNK 48 (137)
T ss_pred CcEEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCE
Confidence 499999999987 46799999999999986 357999999998642
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~kT~v~~~~~nP~fn 67 (137)
T cd08409 49 VVKTKKTEVVDGAASPSFN 67 (137)
T ss_pred EeeeeecccEeCCCCCccc
Confidence 34776 89999998
No 130
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.74 E-value=2.3e-08 Score=86.51 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=47.0
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC-e-
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-D- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~- 458 (471)
|+|.+++.|.| ..|.|.|+|++|+||+. .+.+||||++++.. .
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~ 48 (135)
T cd08410 1 GELLLSLNYLP--------------------------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLK 48 (135)
T ss_pred CcEEEEEEECC--------------------------------CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCc
Confidence 89999999987 46899999999999986 36899999999843 2
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ +|.||+||
T Consensus 49 ~~~~~kT~v~~~t~nP~wn 67 (135)
T cd08410 49 LIKTKKTSCMRGTIDPFYN 67 (135)
T ss_pred ccceEcCccccCCCCCccc
Confidence 23665 88999998
No 131
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.73 E-value=3e-08 Score=84.43 Aligned_cols=57 Identities=25% Similarity=0.461 Sum_probs=48.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
+|+|++++.|.| ..|.|.|.|++|+||+. .+.+||||++++..
T Consensus 2 ~G~l~~sl~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~ 49 (124)
T cd08387 2 RGELHFSLEYDK--------------------------------DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR 49 (124)
T ss_pred CCEEEEEEEECC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC
Confidence 699999999987 46799999999999986 36899999999942
Q ss_pred -eeeeeC---CCCCCcCC
Q 012089 458 -DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -~~~kTk---~t~nP~Wn 471 (471)
..+||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~~P~wn 67 (124)
T cd08387 50 SNTKQSKIHKKTLNPEFD 67 (124)
T ss_pred CCcEeCceEcCCCCCCcc
Confidence 234776 99999997
No 132
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.72 E-value=3.5e-08 Score=83.32 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred ceEEEEEEeeeecCCC--CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
.+.|.|+|++|+||+. .+.+||||++++... ++||+ ++.||+||
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~n 64 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFH 64 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccc
Confidence 5689999999999986 367999999999752 33776 89999998
No 133
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.71 E-value=3.5e-08 Score=84.00 Aligned_cols=57 Identities=28% Similarity=0.382 Sum_probs=48.3
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.+++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~ 49 (124)
T cd08385 2 LGKLQFSLDYDF--------------------------------QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK 49 (124)
T ss_pred ccEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC
Confidence 699999999986 46799999999999986 357999999998643
Q ss_pred --eeeeC---CCCCCcCC
Q 012089 459 --KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 --~~kTk---~t~nP~Wn 471 (471)
.+||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~nP~wn 67 (124)
T cd08385 50 KKKFETKVHRKTLNPVFN 67 (124)
T ss_pred CCceecccCcCCCCCcee
Confidence 23776 89999997
No 134
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.71 E-value=5e-08 Score=101.85 Aligned_cols=126 Identities=25% Similarity=0.393 Sum_probs=96.3
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEEcCccc---cceeeeeecCCCCCeEe-eEEEEEeecCCCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKL---PWKKTTVKKKNLNPEWN-ENFKLVVKEPESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~---~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~L~v~v~d~d~ 339 (471)
-.|.|.|+.|++|+... .|.+.|||+|.+-+... ..++|.+..+++||+|| |.|+|.+.+|+-.-|+|.|||.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56889999999999543 35567999999866432 23466777899999999 999999999998899999999999
Q ss_pred CCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEeccCC
Q 012089 340 VGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (471)
++...|||++.+|+..+..+-. ..+|.... ...-....|.+.+...|..+.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~GfR---sVpLkN~y-----SEdlELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGFR---SVPLKNGY-----SEDLELASLLVFIEMRPVLES 1194 (1267)
T ss_pred cCCcceeeeeecchhhhhccce---eeecccCc-----hhhhhhhhheeeeEeccccCc
Confidence 9998999999999999987632 22332110 112345677888888886554
No 135
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.71 E-value=4.1e-08 Score=83.63 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc---
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--- 456 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~--- 456 (471)
.|+|++++.|.+ ..+.|.|.|++|+||+. .+.+||||++++.
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 49 (125)
T cd08386 2 LGRIQFSVSYDF--------------------------------QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK 49 (125)
T ss_pred ccEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC
Confidence 699999999976 46789999999999986 4679999999994
Q ss_pred CeeeeeC---CCCCCcCC
Q 012089 457 GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~~~kTk---~t~nP~Wn 471 (471)
+...||+ ++.||+||
T Consensus 50 ~~~~kT~v~~~t~~P~Wn 67 (125)
T cd08386 50 KHKLETKVKRKNLNPHWN 67 (125)
T ss_pred CcceeeeeecCCCCCccc
Confidence 3334776 89999998
No 136
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.69 E-value=3.2e-08 Score=84.60 Aligned_cols=55 Identities=7% Similarity=0.080 Sum_probs=44.4
Q ss_pred EEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEEEEEcCe---
Q 012089 385 KIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAIILYKGD--- 458 (471)
Q Consensus 385 ~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~--- 458 (471)
+|.++|+|.| .+|+|+|+|++|+||+.. +.+|||||+++...
T Consensus 2 el~~sL~Y~p--------------------------------~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~ 49 (135)
T cd08692 2 ELQLGTCFQA--------------------------------VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGL 49 (135)
T ss_pred eEEEEeeecC--------------------------------cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCc
Confidence 7899999998 688999999999999874 45799999987532
Q ss_pred --eeeeC---CC-CCCcCC
Q 012089 459 --KKRTK---KN-SRPCLE 471 (471)
Q Consensus 459 --~~kTk---~t-~nP~Wn 471 (471)
++||+ +| +||+||
T Consensus 50 ~~KkKT~v~k~t~~~P~fN 68 (135)
T cd08692 50 LYKKKTRLVKSSNGQVKWG 68 (135)
T ss_pred ceeecCccEECCCCCceec
Confidence 23665 66 469998
No 137
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.68 E-value=3.4e-08 Score=102.11 Aligned_cols=124 Identities=26% Similarity=0.361 Sum_probs=96.1
Q ss_pred EEEccccccCccCCCCCcEEEEEEcCcc-ccceeeeeecCCCCCeEeeEEEEEeecC---------------CCCeEEEE
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLTGEK-LPWKKTTVKKKNLNPEWNENFKLVVKEP---------------ESQILQLQ 333 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~---------------~~~~L~v~ 333 (471)
+.+++++-+.+ ++.+|||+.+...+.. ....+|++++.|.+|.|+|.|.|.+... ..-.++++
T Consensus 137 ~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~ 215 (800)
T KOG2059|consen 137 VLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD 215 (800)
T ss_pred hhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence 34445555544 4669999999986543 2346899999999999999999998754 23478999
Q ss_pred EEE-cCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 334 VFD-WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 334 v~d-~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+|+ .+....++|+|++.+|+..+........|+.|.+..+.++...+...|.+++.+.|.-
T Consensus 216 lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 216 LWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred eccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999 5566679999999999999886666778888877766555556778899999999974
No 138
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.68 E-value=5.5e-08 Score=82.63 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=37.7
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe------eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD------KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~------~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. ++.+||||++++..+ ++||+ ++.||+||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfn 68 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN 68 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccc
Confidence 57899999999999986 468999999998532 33676 99999998
No 139
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.67 E-value=5.4e-08 Score=98.15 Aligned_cols=122 Identities=28% Similarity=0.407 Sum_probs=97.6
Q ss_pred eEEEEEEEEccccccCccC-CCCCcEEEEEEcCccccceeeeeecCCCCCeEe-eEEEEEeecC--CCCeEEEEEEEcCC
Q 012089 264 GILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWN-ENFKLVVKEP--ESQILQLQVFDWDK 339 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~--~~~~L~v~v~d~d~ 339 (471)
|.|.|+|..|++|+.+|.. ...|.||.+.+.+... +|.+..+++||.|| +.|.|.+.+. ....|.+.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~---ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF---KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce---ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999998854 4679999999987654 89999999999999 7899998754 36789999999999
Q ss_pred CCCCCeeEEEEEECcccCCCC----------ceEEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 340 VGGHDRLGMQLVPLKLLTPHE----------TKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 340 ~~~d~~lG~~~i~L~~l~~~~----------~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
.+.+|-||.+.|+++.+.-++ ...-|++....+ ...+|+|.+-+..--+
T Consensus 80 ysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivkvdlf 138 (1169)
T KOG1031|consen 80 YSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVKVDLF 138 (1169)
T ss_pred cccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEEEeeh
Confidence 999999999999998775321 134677765543 3467888876654433
No 140
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.66 E-value=6e-08 Score=83.97 Aligned_cols=57 Identities=32% Similarity=0.540 Sum_probs=47.9
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.++++|.| ..|.|.|.|++|+||+. .+.+||||++++..
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~ 48 (136)
T cd08402 1 LGDICFSLRYVP--------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 48 (136)
T ss_pred CcEEEEEeEEcC--------------------------------CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECC
Confidence 499999999988 56899999999999986 36799999999953
Q ss_pred e---eeeeC---CCCCCcCC
Q 012089 458 D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~---~~kTk---~t~nP~Wn 471 (471)
+ ++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~nP~wn 68 (136)
T cd08402 49 KRLKKKKTTIKKRTLNPYYN 68 (136)
T ss_pred cccceeeccceeCCCCCccc
Confidence 1 23665 89999997
No 141
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.65 E-value=8.4e-08 Score=83.06 Aligned_cols=57 Identities=26% Similarity=0.444 Sum_probs=47.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++...
T Consensus 1 ~G~l~~~l~y~~--------------------------------~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~ 48 (136)
T cd08404 1 RGELLLSLCYQP--------------------------------TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGK 48 (136)
T ss_pred CCeEEEEEEEeC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCC
Confidence 599999999976 46789999999999986 368999999998532
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~k~t~nP~w~ 68 (136)
T cd08404 49 KRISKKKTHVKKCTLNPVFN 68 (136)
T ss_pred ceeeeEcCccccCCCCCccC
Confidence 23665 89999997
No 142
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.65 E-value=7.4e-08 Score=83.40 Aligned_cols=57 Identities=25% Similarity=0.524 Sum_probs=47.8
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc--C
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK--G 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~--~ 457 (471)
+|+|.++++|.+ ..+.|.|+|++|+||+. .+.+||||++++. +
T Consensus 1 ~G~l~~sl~y~~--------------------------------~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~ 48 (136)
T cd08405 1 RGELLLSLCYNP--------------------------------TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKD 48 (136)
T ss_pred CcEEEEEEEEcC--------------------------------CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCC
Confidence 599999999987 56899999999999986 4689999999984 2
Q ss_pred e---eeeeC---CCCCCcCC
Q 012089 458 D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~---~~kTk---~t~nP~Wn 471 (471)
. +.||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~~P~wn 68 (136)
T cd08405 49 KRVEKKKTVIKKRTLNPVFN 68 (136)
T ss_pred CccccccCcceeCCCCCccc
Confidence 2 23676 89999998
No 143
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.63 E-value=5.7e-08 Score=84.28 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=47.2
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|.++++|.+ ..++|.|+|++|+||+. .+.+||||++++...
T Consensus 2 ~ei~~sL~Y~~--------------------------------~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~ 49 (138)
T cd08408 2 PELLLGLEYNA--------------------------------LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDG 49 (138)
T ss_pred CeEEEEeEEcC--------------------------------CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCC
Confidence 78999999987 57899999999999986 368999999998531
Q ss_pred ----eeeeC---CCCCCcCC
Q 012089 459 ----KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ----~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~~~kT~v~~~t~nPvfn 69 (138)
T cd08408 50 QEISKSKTSIRRGQPDPEFK 69 (138)
T ss_pred cceeeccceeecCCCCCcEe
Confidence 23676 88999998
No 144
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.62 E-value=1e-07 Score=82.16 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=48.1
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|.++++|.+ ..+.|.|.|++|+||+. .+.+||||++++.+
T Consensus 2 ~G~l~~~l~y~~--------------------------------~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~ 49 (133)
T cd04009 2 YGVLTVKAYYRA--------------------------------SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRH 49 (133)
T ss_pred ceEEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCC
Confidence 699999999976 45789999999999986 36899999999863
Q ss_pred -----eeeeeC---CCCCCcCC
Q 012089 458 -----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -----~~~kTk---~t~nP~Wn 471 (471)
..+||+ +|.||+||
T Consensus 50 ~~~~~~~~kT~v~~~t~nP~wn 71 (133)
T cd04009 50 LFPDVPTPKTQVKKKTLFPLFD 71 (133)
T ss_pred cCccccccccccCcCCCCCccC
Confidence 234776 99999998
No 145
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.62 E-value=1.2e-07 Score=80.40 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=46.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC----CCCCCcEEEEEEcC--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG----ENHNNPYAIILYKG-- 457 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~-- 457 (471)
|+|++++.|.+ ..+.|.|+|.+|+||+. .+.+||||++++.+
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~ 48 (123)
T cd08521 1 GEIEFSLSYNY--------------------------------KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDK 48 (123)
T ss_pred CeEEEEEEEeC--------------------------------CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCC
Confidence 89999999976 56799999999999985 35899999999843
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
.++||+ ++.||+||
T Consensus 49 ~~~~~~kT~v~~~t~~P~wn 68 (123)
T cd08521 49 SKQSKRKTSVKKNTTNPVFN 68 (123)
T ss_pred CcCceeeccccCCCCCCccc
Confidence 234676 88999998
No 146
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.61 E-value=1.1e-07 Score=80.99 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=47.6
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD- 458 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~- 458 (471)
.|+|.+++.|.+ .++.|.|+|++|+||+. .+.+||||++.+...
T Consensus 2 ~G~l~~sl~Y~~--------------------------------~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~ 49 (124)
T cd08389 2 CGDLDVAFEYDP--------------------------------SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK 49 (124)
T ss_pred CEEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC
Confidence 599999999987 56799999999999986 367999999887443
Q ss_pred --eeeeC--CCCCCcCC
Q 012089 459 --KKRTK--KNSRPCLE 471 (471)
Q Consensus 459 --~~kTk--~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 50 ~~~~kTkv~~~~nP~fn 66 (124)
T cd08389 50 KQRAKTKVQRGPNPVFN 66 (124)
T ss_pred cceeecccccCCCCccc
Confidence 33777 55999998
No 147
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.60 E-value=1.2e-07 Score=81.89 Aligned_cols=56 Identities=25% Similarity=0.535 Sum_probs=47.1
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|.+++.|.| .++.|+|+|++|++|+. .+.+||||++++...
T Consensus 1 g~l~~~~~y~~--------------------------------~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~ 48 (134)
T cd08403 1 GELMFSLCYLP--------------------------------TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGR 48 (134)
T ss_pred CeEEEEEEEcC--------------------------------CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCc
Confidence 89999999987 57899999999999986 368999999998532
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
++||+ ++.||+||
T Consensus 49 ~~~~~kT~v~~~t~nP~wn 67 (134)
T cd08403 49 RLKKKKTSVKKNTLNPTYN 67 (134)
T ss_pred ccceecCCcccCCCCCccc
Confidence 23665 88999997
No 148
>PLN02352 phospholipase D epsilon
Probab=98.59 E-value=4.3e-07 Score=97.13 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=91.7
Q ss_pred CceEEEEEEEEccccccC----cc-CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 262 PVGILHVKVVRASKLLKK----DF-LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~----d~-~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
-.|.|.++|.+|+-+... +. ....||||.+.+++.+. .|| .+..||.|||+|.+.+.-.....+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v--~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~ 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV--AKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE--ecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence 469999999999843321 11 11239999999997665 466 556699999999999976543579999988
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCc-eEEEEecccccCCCCCCCCccc-eEEEEEEEEEeccCCc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHET-KEFTLDLLKHTNISDPKDMKQR-GKIVVELTYVPFKEDS 399 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~-G~l~l~l~y~p~~~~~ 399 (471)
...+||.+.+|..++..+.. .+.|+++..... .... ..|++++.|.|...+.
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~------~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG------KPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC------CCCCCCEEEEEEEEEEhhhCc
Confidence 25789999999999998865 788998865321 1123 5999999999987764
No 149
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.55 E-value=1.2e-07 Score=80.11 Aligned_cols=43 Identities=26% Similarity=0.240 Sum_probs=38.3
Q ss_pred eEEEEEEeeeecCCC--CCCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
|.|.|+|++||+|+. .+.+||||++.+++++.||+ ++.||+||
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WN 50 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWN 50 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccC
Confidence 799999999999875 37899999999999888887 47999998
No 150
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.54 E-value=1.3e-07 Score=77.90 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=37.7
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+||+. .+.+||||+++++++.+||+ +|.||+||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWE 48 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCccc
Confidence 37899999999986 36899999999999888887 89999998
No 151
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.53 E-value=2.4e-07 Score=78.64 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=46.7
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC----CCCCcEEEEEEcC--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE----NHNNPYAIILYKG-- 457 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~----~~~dpyv~v~~~~-- 457 (471)
|+|.+++.|.+ .++.|.|.|.+|+||+.. +.+||||++++..
T Consensus 1 G~l~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~ 48 (123)
T cd08390 1 GRLWFSVQYDL--------------------------------EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE 48 (123)
T ss_pred CEEEEEEEECC--------------------------------CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC
Confidence 89999999976 467999999999999863 4789999999853
Q ss_pred -eeeeeC---CCCCCcCC
Q 012089 458 -DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 -~~~kTk---~t~nP~Wn 471 (471)
..+||+ ++.||+||
T Consensus 49 ~~~~~T~v~~~~~~P~wn 66 (123)
T cd08390 49 RRSLQSKVKRKTQNPNFD 66 (123)
T ss_pred CCceEeeeEcCCCCCccc
Confidence 233676 99999997
No 152
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.52 E-value=3.1e-07 Score=77.96 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=47.4
Q ss_pred ceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcC--
Q 012089 383 RGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG-- 457 (471)
Q Consensus 383 ~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-- 457 (471)
.|+|++++.|.+ ..+.|.|+|++|+||+. .+.+||||++++.+
T Consensus 1 ~G~~~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~ 48 (123)
T cd04035 1 LGTLEFTLLYDP--------------------------------ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGA 48 (123)
T ss_pred CcEEEEEEEEeC--------------------------------CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCC
Confidence 489999999987 46789999999999986 35799999999842
Q ss_pred ---eeeeeC---CCCCCcCC
Q 012089 458 ---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ---~~~kTk---~t~nP~Wn 471 (471)
...||+ ++.||+||
T Consensus 49 ~~~~~~rT~v~~~~~~P~Wn 68 (123)
T cd04035 49 SKATKLRTKTVHKTRNPEFN 68 (123)
T ss_pred CCCCceeeeeecCCCCCCcc
Confidence 234776 89999998
No 153
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.52 E-value=2.4e-07 Score=79.80 Aligned_cols=56 Identities=27% Similarity=0.510 Sum_probs=47.4
Q ss_pred eEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe--
Q 012089 384 GKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-- 458 (471)
Q Consensus 384 G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-- 458 (471)
|+|++.++|.+ ..+.|.|+|++|+||+. .+.+||||++++.+.
T Consensus 1 G~i~~~l~y~~--------------------------------~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~ 48 (134)
T cd00276 1 GELLLSLSYLP--------------------------------TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK 48 (134)
T ss_pred CeEEEEEEeeC--------------------------------CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe
Confidence 89999999987 46799999999999986 358999999998654
Q ss_pred ---eeeeC---CCCCCcCC
Q 012089 459 ---KKRTK---KNSRPCLE 471 (471)
Q Consensus 459 ---~~kTk---~t~nP~Wn 471 (471)
.+||+ ++.||+||
T Consensus 49 ~~~~~~T~~~~~~~~P~wn 67 (134)
T cd00276 49 KLKKKKTSVKKGTLNPVFN 67 (134)
T ss_pred EeeeecCcceecCCCCeee
Confidence 23666 88999997
No 154
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.50 E-value=1.9e-07 Score=77.36 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=37.9
Q ss_pred eEEEEEEeeeecCCCC-------CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~-------~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|+|.|+|.+|+||+.. +.+||||+++++++..||+ ++.||+||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWn 53 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFN 53 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCccc
Confidence 6899999999999862 2489999999988777888 89999998
No 155
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.49 E-value=2.7e-07 Score=79.57 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=37.6
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
..+.|.|+|++|+||+. .+.+||||++++.++ ..||+ ++.||+||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 57899999999999986 357999999999642 23676 89999998
No 156
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.48 E-value=7.1e-08 Score=103.14 Aligned_cols=92 Identities=28% Similarity=0.390 Sum_probs=82.5
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGG 342 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~ 342 (471)
...++|.+++|.+|.+.|.+|.+|||+++.+++... ..++..+.+|+||+|++.|++....+....+.++|||+|..+.
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~-~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRT-LDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchh-hhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccc
Confidence 445779999999999999999999999999997654 2367788999999999999999888778899999999999999
Q ss_pred CCeeEEEEEECcc
Q 012089 343 HDRLGMQLVPLKL 355 (471)
Q Consensus 343 d~~lG~~~i~L~~ 355 (471)
|+.+|+..++|+.
T Consensus 691 d~~iget~iDLEn 703 (1105)
T KOG1326|consen 691 DEKIGETTIDLEN 703 (1105)
T ss_pred cchhhceehhhhh
Confidence 9999999999875
No 157
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.44 E-value=3.4e-07 Score=78.15 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=38.4
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCee-eeeC--CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTK--KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~-~kTk--~t~nP~Wn 471 (471)
..|+|+|++|+||+.++.+||||++++++.+ .||+ ++.||+||
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v~~~~nP~Wn 49 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKVREGPNPVWS 49 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeecCCCCCCccC
Confidence 4799999999999998899999999998755 4787 88999998
No 158
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.44 E-value=2.5e-07 Score=78.68 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=37.1
Q ss_pred EEEEEEeeeec---CCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAED---VEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~---L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+| |+. .+.+||||++.+++++.||+ ++.||+||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~Wn 51 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWN 51 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcce
Confidence 38899999999 654 47899999999999988888 89999998
No 159
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.43 E-value=3.9e-07 Score=76.89 Aligned_cols=43 Identities=33% Similarity=0.446 Sum_probs=39.1
Q ss_pred eEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC--CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK--KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk--~t~nP~Wn 471 (471)
+.|.|.|.+||+|+.++..||||++.+++++.||+ +..||.||
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~~nP~Wn 46 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRGSQPCWE 46 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCCCCCcee
Confidence 58999999999999888899999999999877888 66799998
No 160
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.41 E-value=3.5e-07 Score=77.92 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=40.3
Q ss_pred cceEEEEEEeeeecCCC--CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|+|+|++|+||+. .+.+||||+++++++..||+ ++.||+||
T Consensus 26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWN 75 (127)
T cd04032 26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWN 75 (127)
T ss_pred CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCC
Confidence 56899999999999985 46799999999998877888 88999998
No 161
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.40 E-value=3.8e-07 Score=76.78 Aligned_cols=43 Identities=28% Similarity=0.524 Sum_probs=37.5
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---C-CCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---K-NSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~-t~nP~Wn 471 (471)
|.|+|+|++|+||+. .+.+||||++++++.++||+ + +.||+||
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wn 50 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWD 50 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccC
Confidence 689999999999986 36899999999998777776 3 6899998
No 162
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.39 E-value=3.8e-07 Score=76.87 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=33.9
Q ss_pred EEEEEEeeeecCCCC--CCCCcEEEEEEcC----e---eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE--NHNNPYAIILYKG----D---KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~--~~~dpyv~v~~~~----~---~~kTk---~t~nP~Wn 471 (471)
+|+|+|.+|+||+.. +.+||||++++.+ + ++||+ +|.||+||
T Consensus 1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwN 54 (120)
T cd08395 1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYN 54 (120)
T ss_pred CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccC
Confidence 489999999999874 6899999999842 2 22565 88899998
No 163
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.38 E-value=5.4e-07 Score=75.09 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=38.7
Q ss_pred ceEEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.-.|+|+|++|+||+ .+.+||||+++++++++||+ ++.||+||
T Consensus 3 ~~~l~V~v~~a~~L~-~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wn 48 (111)
T cd04011 3 DFQVRVRVIEARQLV-GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYN 48 (111)
T ss_pred cEEEEEEEEEcccCC-CCCCCCEEEEEECCEeeeeeEEeccCCCccc
Confidence 357999999999999 57899999999999888887 78999998
No 164
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.37 E-value=7.2e-07 Score=77.18 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=40.7
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..|.|+|+|++|+||+. .+.+||||+++++++..||+ +|.||.||
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wn 63 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWN 63 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccC
Confidence 56999999999999986 36899999999998888887 89999998
No 165
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.37 E-value=3.1e-07 Score=99.54 Aligned_cols=108 Identities=26% Similarity=0.192 Sum_probs=88.7
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEe---ecCCCCeEEEEEEE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVV---KEPESQILQLQVFD 336 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v---~~~~~~~L~v~v~d 336 (471)
..|+|.|-|..|++|+--..+..+||||+.++.++ +..++||++.++|.||+|||...+.- .......|.++||.
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence 36899999999999976555678999999999875 33467999999999999999887662 12235789999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCCceEEEEecc
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLL 369 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~ 369 (471)
.+....+.++|.+.++|.++...++...|+.|.
T Consensus 1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 999989999999999999988776666777663
No 166
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.35 E-value=6.2e-07 Score=74.74 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=36.2
Q ss_pred eEEEEEEeeeecCCC---C-CCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---E-NHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~-~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
|.|+|+|++|+||+. . +.+||||++++.+. ..||+ +|.||+||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wn 53 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWE 53 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccc
Confidence 689999999999986 3 68999999998543 23776 99999998
No 167
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.31 E-value=7.2e-07 Score=75.56 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=37.5
Q ss_pred EEEEEEeeeecCCCCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.|.|+|++|+||+.. .+||||+++++++.+||+ +|.||+||
T Consensus 1 ~L~V~Vi~a~~L~~~-~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wn 44 (121)
T cd08378 1 YLYVRVVKARGLPAN-SNDPVVEVKLGNYKGSTKAIERTSNPEWN 44 (121)
T ss_pred CEEEEEEEecCCCcc-cCCCEEEEEECCccccccccCCCCCCccc
Confidence 388999999999988 899999999998877887 89999998
No 168
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.31 E-value=8.5e-07 Score=74.40 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=37.4
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+++|+|++|+||+.. +.+||||++++++++.||+ +|.||.||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWL 48 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCcee
Confidence 478999999999873 6899999999998878887 89999997
No 169
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.28 E-value=2.3e-06 Score=73.52 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=36.2
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
+.|+|+|++|+||+. .+.+||||++.+.+ ...||+ ++.||.||
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wn 66 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWN 66 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCcc
Confidence 689999999999985 35799999999964 334776 88999997
No 170
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.25 E-value=1.4e-06 Score=72.40 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=35.9
Q ss_pred EEEEEeeeecCCC----CCCCCcEEEEEEcCeeeeeC---CCCCCcC-C
Q 012089 431 LSVLVQGAEDVEG----ENHNNPYAIILYKGDKKRTK---KNSRPCL-E 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~~~kTk---~t~nP~W-n 471 (471)
|.|+|++|+||+. .+.+||||++++++.+.||+ ++.||+| |
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~n 49 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNS 49 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccC
Confidence 5799999999985 35799999999998777887 8899999 5
No 171
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.24 E-value=1.9e-06 Score=73.57 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=39.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.++|+|+|++|+||.. .+.+||||++.++++..||+ ++.||+||
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wn 51 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFD 51 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCccc
Confidence 4689999999999986 36899999999999888888 89999998
No 172
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.24 E-value=1.9e-06 Score=72.52 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=38.3
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|.|+|++|+||+. .+.+||||++++++...||+ ++.||.||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~ 49 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWN 49 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccC
Confidence 689999999999986 35799999999998877887 89999997
No 173
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.24 E-value=1.6e-06 Score=73.19 Aligned_cols=43 Identities=26% Similarity=0.471 Sum_probs=38.0
Q ss_pred eEEEEEEeeeecCCCC---------CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE---------NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~---------~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|.|.|++|+||+.. +.+||||+++++++..||+ ++.||+||
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~ 55 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWN 55 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCccc
Confidence 6799999999999852 4799999999998777887 89999997
No 174
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.24 E-value=2e-06 Score=73.47 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=38.4
Q ss_pred eEEEEEEeeeecCCC-----CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG-----ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~-----~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
|.|+|.|++|+||+. .+.+||||++++++++.||+ ++.||+||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wn 51 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWN 51 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccC
Confidence 689999999999975 35799999999988878887 89999997
No 175
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.22 E-value=1.9e-06 Score=73.14 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=37.1
Q ss_pred EEEEEEeeeecCCCC---CCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE---NHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+|+|+|++|+||+.. +.+||||++++++...||+ +|.||+||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wn 48 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWN 48 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccC
Confidence 589999999999863 5799999999998877887 89999998
No 176
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=1.6e-06 Score=82.64 Aligned_cols=95 Identities=34% Similarity=0.394 Sum_probs=79.1
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQ 333 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~ 333 (471)
++.....-|.|++++|..|..+|.+|.+||||..++.++. .-+++|.+.++|.||.||+.|.|.+.. .....+.+.
T Consensus 227 ~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 227 AYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred ccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 4566678899999999999999999999999999997642 335689999999999999999998863 336789999
Q ss_pred EEEcCCCCCCCeeEEEEEE
Q 012089 334 VFDWDKVGGHDRLGMQLVP 352 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~ 352 (471)
|||++.....+++|-+...
T Consensus 307 vgd~~~G~s~d~~GG~~~g 325 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSMLG 325 (362)
T ss_pred ecccCCCcCccCCCccccc
Confidence 9999987678888875543
No 177
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.16 E-value=4e-06 Score=72.12 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=38.1
Q ss_pred cceEEEEEEeeeecCCCC-------------CCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE-------------NHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~-------------~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
.+|.|+|+|++|+||... +.+||||++.+++++. ||+ +|.||+||
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wn 63 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWN 63 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcc
Confidence 468999999999999752 3689999999998664 665 89999998
No 178
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.15 E-value=3.3e-06 Score=72.13 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=37.7
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
+.|+|+|++|++|+. .+.+||||+++++++..||+ +|.||+||
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wn 49 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWN 49 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccc
Confidence 378999999999986 35799999999988777887 89999998
No 179
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=9.2e-06 Score=83.35 Aligned_cols=121 Identities=23% Similarity=0.346 Sum_probs=96.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcC----ccccceeeeeecCCCCCeEeeEEEEEeec---CCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG----EKLPWKKTTVKKKNLNPEWNENFKLVVKE---PESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~----~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~~L~v~v~ 335 (471)
...++|.|+.|.+|+-. ..|.-.|||.+.+.+ ++.+++.|+.+.++-.|.+||+|.|.+.+ |+...|.++|.
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 34678888999999864 467889999999854 34455678898999999999999999864 44678999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
|+.-.+.|..+|.+.++|+++........|++|..+++. ...|-..+++
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm------DeTGLtiLRI 1251 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM------DETGLTILRI 1251 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccccccc------cccchhHHHH
Confidence 998777788999999999999988888899999776543 3456555554
No 180
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.13 E-value=4.1e-06 Score=70.86 Aligned_cols=42 Identities=21% Similarity=0.483 Sum_probs=35.6
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
.|+|+|++|+||+. .+.+||||++++++.. .||+ ++.||+||
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wn 49 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWD 49 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccc
Confidence 37899999999986 3689999999998743 4776 99999998
No 181
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.10 E-value=5.7e-06 Score=69.95 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=36.9
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|+|+|++|+||+. .+.+||||+++++++. .||+ ++.||+||
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wn 50 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWD 50 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccC
Confidence 689999999999987 3689999999998754 3665 89999998
No 182
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.10 E-value=5.3e-06 Score=70.23 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+. .+.+||||++.++++.. ||+ ++.||+||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wn 49 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWG 49 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCccc
Confidence 7899999999986 46899999999987653 777 99999998
No 183
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.10 E-value=4.6e-06 Score=70.63 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEEEeeeecCCCC----CCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE----NHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~----~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|.|.+|+||+.. +.+||||++.++++. .||+ +|.||+||
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~Wn 50 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFG 50 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccC
Confidence 67899999999863 478999999998764 4776 99999998
No 184
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.08 E-value=4.5e-06 Score=70.42 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=34.5
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE---NHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~---~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
|+|+|++|+||+.. +.+||||++++++ .++||+ +|.||+||
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wn 51 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWN 51 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccc
Confidence 78999999999863 5899999999964 334777 88999998
No 185
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.08 E-value=5.7e-06 Score=70.28 Aligned_cols=43 Identities=26% Similarity=0.490 Sum_probs=37.4
Q ss_pred eEEEEEEeeeecCCC---CCCCCcEEEEEEcCeeeeeC----CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEG---ENHNNPYAIILYKGDKKRTK----KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~kTk----~t~nP~Wn 471 (471)
|.|.|+|++|+||+. .+.+||||+++++++.++|+ ++.||+||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wn 50 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWN 50 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCccc
Confidence 689999999999986 35899999999988877776 47899998
No 186
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.06 E-value=5.7e-06 Score=70.10 Aligned_cols=43 Identities=28% Similarity=0.535 Sum_probs=37.0
Q ss_pred eEEEEEEeeeecCCCC----CCCCcEEEEEEcC--eeeeeC---CCCCCcCC
Q 012089 429 GLLSVLVQGAEDVEGE----NHNNPYAIILYKG--DKKRTK---KNSRPCLE 471 (471)
Q Consensus 429 g~L~V~v~~Ak~L~~~----~~~dpyv~v~~~~--~~~kTk---~t~nP~Wn 471 (471)
|.|.|+|++|+||+.. +.+||||++.+++ ...||+ ++.||.||
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wn 53 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWN 53 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcce
Confidence 7899999999999852 4689999999988 455776 99999997
No 187
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.06 E-value=6.7e-06 Score=68.95 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=35.6
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+..+.+||||++++++++ .||+ + .||+||
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wn 45 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVEK-LNPFWG 45 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEEC-CCCccc
Confidence 78999999999988889999999998865 4776 7 999998
No 188
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.05 E-value=2.4e-05 Score=80.26 Aligned_cols=133 Identities=20% Similarity=0.248 Sum_probs=92.5
Q ss_pred ceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCC----CCCCeeEEEEEECcccCCCCceEEEEecccccCCC
Q 012089 300 WKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKV----GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNIS 375 (471)
Q Consensus 300 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~----~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~ 375 (471)
..+|.++.+.+||.|-+.|.+.......|.++++++|.+.. ..++|+|++...+..+.........+.+..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~----- 116 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP----- 116 (529)
T ss_pred ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----
Confidence 34899999999999999999888877789999999998743 457899999999998876543322222211
Q ss_pred CCCCCccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCCC---CCCCcEEE
Q 012089 376 DPKDMKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEGE---NHNNPYAI 452 (471)
Q Consensus 376 ~~~~~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~~---~~~dpyv~ 452 (471)
......|+|.+...-.- .......-..+|++|+.+ +++|||.+
T Consensus 117 --~~~~~~g~iti~aee~~--------------------------------~~~~~~~~~~~~~~ld~kd~f~ksd~~l~ 162 (529)
T KOG1327|consen 117 --GKNAGSGTITISAEEDE--------------------------------SDNDVVQFSFRAKNLDPKDFFSKSDPYLE 162 (529)
T ss_pred --CccCCcccEEEEeeccc--------------------------------ccCceeeeeeeeeecCcccccccCCcceE
Confidence 12345677777664211 111222334468999874 68999999
Q ss_pred EEEc--Ceee----eeC---CCCCCcCC
Q 012089 453 ILYK--GDKK----RTK---KNSRPCLE 471 (471)
Q Consensus 453 v~~~--~~~~----kTk---~t~nP~Wn 471 (471)
++-. .... +|. +++||.|.
T Consensus 163 ~~~~~~d~s~~~~~~tEv~~n~l~p~w~ 190 (529)
T KOG1327|consen 163 FYKRVDDGSTQMLYRTEVVKNTLNPQWA 190 (529)
T ss_pred EEEecCCCceeeccccceeccCCCCccc
Confidence 9854 2222 665 89999993
No 189
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.05 E-value=6.4e-06 Score=69.93 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.0
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEc-CeeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYK-GDKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~-~~~~kTk---~t~nP~Wn 471 (471)
|+|+|++|+||+. .+.+||||+++++ .+..||+ ++.||+||
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wn 49 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWN 49 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCccc
Confidence 7899999999986 3579999999997 4445887 89999998
No 190
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.94 E-value=1.2e-05 Score=68.27 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=35.4
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCeee--eeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGDKK--RTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~~--kTk---~t~nP~Wn 471 (471)
.|+|.|++|+||+. .+.+||||+++++++.. ||+ +|.||+||
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wn 50 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFG 50 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccc
Confidence 37899999999986 36899999999988653 554 89999997
No 191
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=97.91 E-value=1.9e-05 Score=69.48 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.4
Q ss_pred cceEEEEEEeeeecCCC---CCCCCcEEEEEEcC
Q 012089 427 GAGLLSVLVQGAEDVEG---ENHNNPYAIILYKG 457 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~ 457 (471)
..+.|+|+|++|+||.. .+.+||||++.+..
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~ 59 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVP 59 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcc
Confidence 68999999999999986 46899999999864
No 192
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=97.89 E-value=1.6e-05 Score=67.62 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=35.3
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eeeeeC----CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTK----KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~~~kTk----~t~nP~Wn 471 (471)
|+|+|++|+||+. .+.+||||++++++ +++||+ ++.||+||
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wn 50 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWN 50 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCC
Confidence 7899999999986 36899999999988 666776 47899998
No 193
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=97.89 E-value=2.3e-05 Score=66.68 Aligned_cols=42 Identities=17% Similarity=0.418 Sum_probs=35.2
Q ss_pred EEEEEEeeeecCCC---CCCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG---ENHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
.|+|+|.+|+||+. .+.+||||++++++. ..||+ ++.||+||
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wn 52 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWD 52 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCccc
Confidence 68999999999986 368999999998754 23776 89999998
No 194
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.82 E-value=1.4e-05 Score=61.68 Aligned_cols=91 Identities=20% Similarity=0.228 Sum_probs=66.0
Q ss_pred EEEEEEccccccCccCC-CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeec--CCCCeEEEEEEEcCCCCCC
Q 012089 267 HVKVVRASKLLKKDFLG-TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKE--PESQILQLQVFDWDKVGGH 343 (471)
Q Consensus 267 ~V~v~~a~~L~~~d~~g-~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~~L~v~v~d~d~~~~d 343 (471)
-|++++|++|.-....| .+.-|++--+.-.+-...||++++...||+|+|+|.|.+.. ...-.|-+.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 47889999987543222 33446654443223234689999999999999999998763 335678888888 45678
Q ss_pred CeeEEEEEECcccCCC
Q 012089 344 DRLGMQLVPLKLLTPH 359 (471)
Q Consensus 344 ~~lG~~~i~L~~l~~~ 359 (471)
+.||.|++.|+++..+
T Consensus 80 e~iG~~sL~l~s~gee 95 (103)
T cd08684 80 RTIGECSLSLRTLSTQ 95 (103)
T ss_pred ceeeEEEeecccCCHH
Confidence 8999999999988755
No 195
>PLN02964 phosphatidylserine decarboxylase
Probab=97.82 E-value=2.4e-05 Score=83.37 Aligned_cols=93 Identities=18% Similarity=0.329 Sum_probs=76.5
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEE-EcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLS-LTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFD 336 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~-l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d 336 (471)
..+.-.|+..+++++|+ ++. .|+|..+- ++.+. +||.+.++|.||+|||...|.+...+....++.|||
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~---f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF---KDKWLACVSFGEQT---FRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hcc---CCcEEEEEEeccee---eeeccccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 35667899999999997 332 58876654 45433 599999999999999999999987666678999999
Q ss_pred cCCCCCCCeeEEEEEECcccCCCC
Q 012089 337 WDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 337 ~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
.+++++++++|.|+++|.++...+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHH
Confidence 999999999999999998776553
No 196
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.75 E-value=4.7e-05 Score=78.20 Aligned_cols=88 Identities=31% Similarity=0.525 Sum_probs=71.0
Q ss_pred EEEccccccCccCCCCCcEEEEEEc--C-ccccceeeeeecCCCCCeEeeEEEEEeecCC----CCeEEEEEEEcCCCCC
Q 012089 270 VVRASKLLKKDFLGTSDPYVKLSLT--G-EKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----SQILQLQVFDWDKVGG 342 (471)
Q Consensus 270 v~~a~~L~~~d~~g~~DPyv~v~l~--~-~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----~~~L~v~v~d~d~~~~ 342 (471)
..+|++|.++|..+++|||..++-. . .....++|++.++++||.|.+ |.+...... ...+.+.+||++..++
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~ 220 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK 220 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence 3568999999999999999988753 2 233457999999999999995 455544322 4678999999999889
Q ss_pred CCeeEEEEEECcccCC
Q 012089 343 HDRLGMQLVPLKLLTP 358 (471)
Q Consensus 343 d~~lG~~~i~L~~l~~ 358 (471)
++++|.+..++.++..
T Consensus 221 ~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 221 HDLIGKFQTTLSELQE 236 (529)
T ss_pred cCceeEecccHHHhcc
Confidence 9999999999998864
No 197
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.74 E-value=3.9e-05 Score=64.06 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=34.4
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
|+|.|++|+||+. .+.+||||++++++.. .||+ ++.||+||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wn 48 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWN 48 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCccc
Confidence 5789999999986 3579999999997644 4776 89999998
No 198
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.72 E-value=4.1e-05 Score=75.68 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=36.7
Q ss_pred ceEEEEEEeeeecCCC---CCCCCcEEEEEEcCee-----eeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG---ENHNNPYAIILYKGDK-----KRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~~~~-----~kTk---~t~nP~Wn 471 (471)
...|.|+|.+|+||-. +|.|||||++.+-.+. +||| .|+||+||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wN 233 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWN 233 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccc
Confidence 4589999999999965 6899999999985433 2666 99999998
No 199
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=97.70 E-value=3.7e-05 Score=59.86 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=35.5
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC---eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG---DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~---~~~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||+. .+.+||||++.+++ ...||+ ++.||.||
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 50 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWN 50 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceee
Confidence 7899999999997 45899999999987 456777 88999996
No 200
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.66 E-value=9.2e-05 Score=61.69 Aligned_cols=93 Identities=28% Similarity=0.390 Sum_probs=67.9
Q ss_pred EEEEEEEccccccCcc-------------CCCCCcEEEEEEc--CccccceeeeeecCCCCCeEeeEEEEEee-------
Q 012089 266 LHVKVVRASKLLKKDF-------------LGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVK------- 323 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~-------------~g~~DPyv~v~l~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~------- 323 (471)
|.|.|++|.||+..-. .-.-++||++.+. ++. ..++|+++.++.-|.|+.+++|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~-e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK-ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC-ceeeccchhhhcCCCccceEEEecccEEEcCC
Confidence 4688899999974321 0124799999854 333 3468999999999999999999865
Q ss_pred -c-------CCCCeEEEEEEEcCCC----------CCCCeeEEEEEECcccCCC
Q 012089 324 -E-------PESQILQLQVFDWDKV----------GGHDRLGMQLVPLKLLTPH 359 (471)
Q Consensus 324 -~-------~~~~~L~v~v~d~d~~----------~~d~~lG~~~i~L~~l~~~ 359 (471)
+ .+...+.++||+.+.- .+|-.||.+.||+.+|...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~ 133 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK 133 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence 1 1245799999997632 2355799999999998744
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.65 E-value=4.1e-05 Score=90.24 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=40.9
Q ss_pred cceEEEEEEeeeecCCCC-CCCCcEEEEEEcCe-eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGE-NHNNPYAIILYKGD-KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~-~~~dpyv~v~~~~~-~~kTk---~t~nP~Wn 471 (471)
-.|.|+|+|++|+||.++ +++||||+++++++ ++||| ++.||+||
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wn 2027 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWK 2027 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCcccccccCCCCCCCcc
Confidence 569999999999999975 89999999999966 66898 99999998
No 202
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.64 E-value=0.00023 Score=73.90 Aligned_cols=225 Identities=18% Similarity=0.287 Sum_probs=145.6
Q ss_pred CCCCcccCCCC-------cchHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCC
Q 012089 61 EIPLWVKNPDY-------ERVDWLNRFLSDMWPY------LDKAICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTL 126 (471)
Q Consensus 61 ~~p~w~~~~d~-------E~~~WlN~~l~~~Wp~------~~~~~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~ 126 (471)
+.|.|+..... -.|--+|.+++....- ...++.+.....++.++... .... ++.+.+.++.+|.+
T Consensus 81 ~~~t~~~~~~~~~~~~~AS~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~L-L~~~~i~elElg~~ 159 (1051)
T KOG3532|consen 81 ELRTFLKSGEDGQGISKASSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRL-LQEIRIRELELGTK 159 (1051)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhh-hcccceehhhhccc
Confidence 58888866432 2455667777777652 22233333333344444433 3444 89999999999999
Q ss_pred CCEEeEEEEEeCC------------C-------------CeEEEEeeeeEecCCcEEEEEEE-eeeEEEEEEEEEEEEEE
Q 012089 127 PPTIYGIRVYETN------------E-------------NQLVMEPALRWAGNPNIVLVLKL-LSFRITVQLVDLQIFAA 180 (471)
Q Consensus 127 ~P~i~~vr~~~~~------------~-------------~~~~le~~~~~~~~~~i~l~~~~-~~~~~~v~v~~l~~~g~ 180 (471)
.|.+++.+++.-+ + ..+.+-+++.|.|+.--++.+.. .+-+..+.|+-.+++|.
T Consensus 160 f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~~kk~S~~iKl~~l~Gm 239 (1051)
T KOG3532|consen 160 FMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTIIAKKASLSVKITKLTGM 239 (1051)
T ss_pred cccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccccccCCceeEEEEEeccc
Confidence 9999999998610 0 12455678899998766666654 22233344446699999
Q ss_pred EEEEEeeCCCCCCceeEEEEEcCCCceEEEEEE--EeCCCccccchhhHHHHHHHHHhhhcccccCCcee-------eec
Q 012089 181 PRITLKPLVPTFPCFATMVVSLMERPHVDFGIK--ILGGDIMSIPGLYQFIQKCITKYVAGIYIWPQTYE-------IPI 251 (471)
Q Consensus 181 ~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~--~~g~~i~~~P~l~~~i~~~i~~~l~~~~v~P~~~~-------i~l 251 (471)
+|+.+. ..|+ ..++++|+..|.+..+.+ -.|-.+-+ -+.+.|++.|+..+.....|||+-- .|+
T Consensus 240 ~r~~~~----r~py-~hw~~sf~G~P~~e~di~s~~qg~qLQ~--~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~~ 312 (1051)
T KOG3532|consen 240 VRVILS----RQPY-HHWTFSFVGQPIFETDINSQIQGHQLQR--LIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNPI 312 (1051)
T ss_pred eeEEEE----eccc-eeeeeeeccCchhhhhhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhccCcchhhhccccccCcc
Confidence 999986 3444 889999999998755444 23222211 2346677888888888899998521 122
Q ss_pred cCccc----ccccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcC
Q 012089 252 LDASS----VAIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTG 295 (471)
Q Consensus 252 ~~~~~----~~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~ 295 (471)
-.... ..--.+.|.+.|++.++..|.. ..++..-||.+.+.+
T Consensus 313 ~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 313 FQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred cccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 11111 0123468999999999988864 457888999998854
No 203
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=97.64 E-value=9.4e-05 Score=62.95 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=34.8
Q ss_pred EEEEEEeeeecCCC--CCCCCcEEEEEEcCe-eeeeC---CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEG--ENHNNPYAIILYKGD-KKRTK---KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~--~~~~dpyv~v~~~~~-~~kTk---~t~nP~Wn 471 (471)
.|.|+|.+|+.+.. .+.+||||+++++++ ..||+ ++.||+||
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wn 50 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWN 50 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccc
Confidence 68999999985444 357999999999887 55776 89999998
No 204
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=97.55 E-value=0.00013 Score=63.58 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=38.1
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
....|.|.|.+||+|+.+. ||||++.+++... ||+ ++.||.||
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~--~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~ 55 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKK--RYYCELCLDKTLYARTTSKLKTDTLFWG 55 (146)
T ss_pred EEEEEEEEEEEccCCCCcC--CceEEEEECCEEEEEEEEEcCCCCCcce
Confidence 4568999999999999854 8999999999886 887 88999997
No 205
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=97.47 E-value=0.00015 Score=60.03 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=29.9
Q ss_pred EEeeeecCCC---CCCCCcEEEEEEcCee------eeeC---CCCCCcCC
Q 012089 434 LVQGAEDVEG---ENHNNPYAIILYKGDK------KRTK---KNSRPCLE 471 (471)
Q Consensus 434 ~v~~Ak~L~~---~~~~dpyv~v~~~~~~------~kTk---~t~nP~Wn 471 (471)
..++|++|+. .+.+||||++++.++. .||+ ++.||+||
T Consensus 5 ~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn 54 (110)
T cd04047 5 LQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK 54 (110)
T ss_pred EEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE
Confidence 3449999986 3589999999986542 3776 89999997
No 206
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=97.39 E-value=0.00022 Score=60.10 Aligned_cols=37 Identities=16% Similarity=0.318 Sum_probs=30.4
Q ss_pred EeeeecCCC---CCCCCcEEEEEEcCee-------eeeC---CCCCCcCC
Q 012089 435 VQGAEDVEG---ENHNNPYAIILYKGDK-------KRTK---KNSRPCLE 471 (471)
Q Consensus 435 v~~Ak~L~~---~~~~dpyv~v~~~~~~-------~kTk---~t~nP~Wn 471 (471)
.++|++|+. .+.+||||++++.+.. .||+ +|.||+||
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wn 55 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFV 55 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCce
Confidence 359999986 3679999999997754 4776 99999997
No 207
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=97.38 E-value=0.0003 Score=59.76 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=33.1
Q ss_pred EEEEEEeeeecCCC-----CCCCCcEEEEEEcC------eeeeeC---CCC-CCcCC
Q 012089 430 LLSVLVQGAEDVEG-----ENHNNPYAIILYKG------DKKRTK---KNS-RPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~-----~~~~dpyv~v~~~~------~~~kTk---~t~-nP~Wn 471 (471)
.|+|+|++|+||+. .+.+||||++++.+ ...||+ ++. ||+||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~ 59 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWN 59 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccC
Confidence 68999999999985 35799999999943 334665 454 99997
No 208
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00015 Score=70.62 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=85.6
Q ss_pred CceEEEEEEEEccccccCccC-CCCCcEEEEEEcCcc--ccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE-Ec
Q 012089 262 PVGILHVKVVRASKLLKKDFL-GTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF-DW 337 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~-d~ 337 (471)
..|.+.|.|++|++|..+-.. ..++|||+|++.+.. ..+.+|+...+|.+|.+.....|.-. +....|.+.+| |+
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s-p~~k~Lq~tv~gdy 345 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS-PPGKYLQGTVWGDY 345 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-CCccEEEEEEeccc
Confidence 479999999999999865432 368999999997653 34568888899999988776666643 44678999999 56
Q ss_pred CCCCCCCeeEEEEEECcccCCCC-ceEEEEecccc
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPHE-TKEFTLDLLKH 371 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~~-~~~~~~~l~~~ 371 (471)
.++.++.|+|.+.+-+.++.... ....|+++...
T Consensus 346 gRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 346 GRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccchHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 67777889999999999998665 66788887653
No 209
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=8.8e-05 Score=80.11 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=84.8
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecC---------CCCeEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEP---------ESQILQLQ 333 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---------~~~~L~v~ 333 (471)
.--+++.|.+|+.|...|..+.+|||+.+.+.++.. .|.++.+|+||.|+++..|.-.+. .-..+.++
T Consensus 205 ~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~---~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e 281 (1105)
T KOG1326|consen 205 HSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSK---ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFE 281 (1105)
T ss_pred hhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccc---eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEE
Confidence 445678889999999999999999999999887654 899999999999999988853211 12468899
Q ss_pred EEEcCCCCCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEE
Q 012089 334 VFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVEL 390 (471)
Q Consensus 334 v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l 390 (471)
+||.++.+.++++|+......-... .+.-.|.+... ++...|++.++.
T Consensus 282 ~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r--------g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 282 VYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR--------GAFLDGDVLIAA 329 (1105)
T ss_pred eehhhhhchHHhhcccccceEEEec-CCccceEEeec--------ccccccchhHHH
Confidence 9999999999999997654332222 33445555443 244556655544
No 210
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=97.26 E-value=0.00052 Score=55.52 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=35.9
Q ss_pred EEEEEeeeecCCC------CCCCCcEEEEEEcCeee-eeCCCCCCcCC
Q 012089 431 LSVLVQGAEDVEG------ENHNNPYAIILYKGDKK-RTKKNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~------~~~~dpyv~v~~~~~~~-kTk~t~nP~Wn 471 (471)
|.|+|+.|||++. .+.+||||.+.+++..+ |||-+.||.||
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~srnd~Wn 48 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPSRNDRWN 48 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCCCCCccc
Confidence 6789999999985 35789999999998855 99988999997
No 211
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=97.09 E-value=0.0004 Score=59.10 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.+.+||||++++++++.||+ +|.||+||
T Consensus 17 ~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wn 47 (126)
T cd08682 17 SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWK 47 (126)
T ss_pred CcCCCceEEEEECCeeeeeeeecCCCCCEeC
Confidence 45799999999998888887 89999998
No 212
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.90 E-value=0.00082 Score=59.05 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
++.+||||++.+++++.||+ ++.||+||
T Consensus 32 ~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWN 62 (151)
T cd04018 32 KELVDPYVEVSFAGQKVKTSVKKNSYNPEWN 62 (151)
T ss_pred CCCcCcEEEEEECCEeeecceEcCCCCCCcc
Confidence 45799999999999888887 99999998
No 213
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=96.87 E-value=0.001 Score=56.66 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
.+.+||||+++++++++||+ ++.||+||
T Consensus 18 ~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wn 48 (127)
T cd04022 18 QGSSSAYVELDFDGQKKRTRTKPKDLNPVWN 48 (127)
T ss_pred CCCcCcEEEEEECCEEecceeEcCCCCCccc
Confidence 45799999999999888887 89999998
No 214
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.84 E-value=0.0012 Score=65.10 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=90.6
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEc--CccccceeeeeecCCCCCeEeeEEEEEeecCC-----------CC
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLT--GEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE-----------SQ 328 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~--~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-----------~~ 328 (471)
..-.|++.|+++.+++........|-|+.+.+. .+.....+|.++++|.+|.|+|.|.+.+.... ..
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677777888877654322234678777652 22223448999999999999999999987411 34
Q ss_pred eEEEEEEEcCCC-CCCCeeEEEEEECcccCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEE
Q 012089 329 ILQLQVFDWDKV-GGHDRLGMQLVPLKLLTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 329 ~L~v~v~d~d~~-~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
.++|++|.+..+ ..|.++|.+.+.|..|.........++|... .....|.|.+.++.-
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------ccccCCeeEEEEEEe
Confidence 689999998765 4588999999999999988777778887543 245678888888765
No 215
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=96.83 E-value=0.0013 Score=72.38 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=48.1
Q ss_pred CccceEEEEEEEEEeccCCcccccccccccccCCCCCCCCCCccccCcceEEEEEEeeeecCCC---CCCCCcEEEEEEc
Q 012089 380 MKQRGKIVVELTYVPFKEDSIKFSSVSKKYSRKGSGNDQSSDEEALSGAGLLSVLVQGAEDVEG---ENHNNPYAIILYK 456 (471)
Q Consensus 380 ~~~~G~l~l~l~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~L~V~v~~Ak~L~~---~~~~dpyv~v~~~ 456 (471)
++..|+|.|+++| ..|.|+|.|+.||+|+- ...+|||||.|+.
T Consensus 1509 ~~iggqV~LsIsY----------------------------------~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLl 1554 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISY----------------------------------NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLL 1554 (1639)
T ss_pred cccCceEEEEEEE----------------------------------cCceEEEEhhhhcccccccCCCCCCcceeEEec
Confidence 4566799999998 36899999999999963 4589999999997
Q ss_pred Ceee-----eeC---CCCCCcCC
Q 012089 457 GDKK-----RTK---KNSRPCLE 471 (471)
Q Consensus 457 ~~~~-----kTk---~t~nP~Wn 471 (471)
.+.+ ||| ||.||.||
T Consensus 1555 Pdp~k~sKRKTKvvrkt~~PTfn 1577 (1639)
T KOG0905|consen 1555 PDPRKTSKRKTKVVRKTRNPTFN 1577 (1639)
T ss_pred CCchHhhhhhhccccccCCCchh
Confidence 6543 777 99999987
No 216
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=96.75 E-value=0.0013 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEEcCee-eeeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDK-KRTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~-~kTk---~t~nP~Wn 471 (471)
.|.+||||+++++++. .||+ ++.||+||
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wn 41 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWN 41 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccC
Confidence 3579999999998764 3665 99999998
No 217
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=96.70 E-value=0.0029 Score=50.00 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=34.3
Q ss_pred EEEEEeeeecCCC---CCCCCcEEEEEEcC-eeeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEG---ENHNNPYAIILYKG-DKKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~---~~~~dpyv~v~~~~-~~~kTk---~t~nP~Wn 471 (471)
|.|.|++|++|+. .+.+||||++++.+ ...+|+ ++.||.||
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~ 48 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWN 48 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCccc
Confidence 4689999999976 35799999999988 555776 77899997
No 218
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=96.63 E-value=0.0022 Score=55.31 Aligned_cols=29 Identities=14% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCCCCCcEEEEEEcCeeeeeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~~~kTk---~t~nP~Wn 471 (471)
..+.+||||+++++++++||+ +|.||+||
T Consensus 18 ~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wn 49 (135)
T cd04017 18 KSGLSDPFARVSFLNQSQETEVIKETLSPTWD 49 (135)
T ss_pred CCCCCCCEEEEEECCeeeEeeeEcCCCCCccC
Confidence 346799999999998888887 89999998
No 219
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.53 E-value=0.0049 Score=48.94 Aligned_cols=41 Identities=29% Similarity=0.547 Sum_probs=34.3
Q ss_pred EEEEEeeeecCCCC---CCCCcEEEEEEcCe---eeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGE---NHNNPYAIILYKGD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~---~~~dpyv~v~~~~~---~~kTk---~t~nP~Wn 471 (471)
+.+.|++|++|... +..+|||++.+.+. ..+|+ ++.||.||
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~ 51 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWN 51 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCccc
Confidence 67899999999874 46999999999875 45776 66799997
No 220
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=96.47 E-value=0.0025 Score=56.54 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
+.+.+||||++.+++.+. ||+ ++.||+||
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 357899999999998664 787 88999998
No 221
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.46 E-value=0.16 Score=43.90 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=80.1
Q ss_pred CceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeee-cCCCCCeEeeEEEEEeec--------CCCCeEEE
Q 012089 262 PVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVK-KKNLNPEWNENFKLVVKE--------PESQILQL 332 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~--------~~~~~L~v 332 (471)
..-.+.|+|++..+++. ....-||+...+.......+|... ..+-.-.|||.|.+.+.- .....+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 34567888999988876 223445555555443212233322 234456899999987641 12457889
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEeccC
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKE 397 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~ 397 (471)
.|+....-++...+|.+.++|.+.... ......++|... .+....|++++.+.+..+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------CCCCcEEEEEEEEEECcc
Confidence 999885333336899999999999874 455566665431 356678999999888543
No 222
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.45 E-value=0.081 Score=46.76 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=60.5
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (471)
..++|+|+++.++.-.+ .+|-||.+.+ +++... ...|+.+. ..++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 45789999999987643 4688888865 433331 12344333 357999999999765 2 2367899999998
Q ss_pred CCCC----CCCeeEEEEEECccc
Q 012089 338 DKVG----GHDRLGMQLVPLKLL 356 (471)
Q Consensus 338 d~~~----~d~~lG~~~i~L~~l 356 (471)
.... ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 6421 124699999998763
No 223
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.28 E-value=0.19 Score=50.03 Aligned_cols=121 Identities=16% Similarity=0.266 Sum_probs=88.3
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEee-------cCCCCeEEEEEEEcC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVK-------EPESQILQLQVFDWD 338 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~-------~~~~~~L~v~v~d~d 338 (471)
+.|+|++|+|.+... ...-.+..++++... .|..+..+-.|.||......+. ......+++++|..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l---~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESL---ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCcee---eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 568899999998752 345678888888776 6777788889999988777664 223678999999998
Q ss_pred -CCCCCCeeEEEEEECccc---CCC--CceEEEEecccccCCCCCCCCccceEEEEEEEEEecc
Q 012089 339 -KVGGHDRLGMQLVPLKLL---TPH--ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVPFK 396 (471)
Q Consensus 339 -~~~~d~~lG~~~i~L~~l---~~~--~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~ 396 (471)
.-++.+.+|.+.++|+.. ..+ .....|++|...... -.+.+-+|.+.+......
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~----y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK----YKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc----cccCCccEEEEEEEeccc
Confidence 556778999999999998 444 456688888763211 123456777777766543
No 224
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.26 E-value=0.068 Score=46.75 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=87.8
Q ss_pred CceEEEEEEEEccccccCccC--CCCCc--EEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCC-----------
Q 012089 262 PVGILHVKVVRASKLLKKDFL--GTSDP--YVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPE----------- 326 (471)
Q Consensus 262 ~~G~L~V~v~~a~~L~~~d~~--g~~DP--yv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~----------- 326 (471)
..-.|+++|..++-.-..-.. +..+. ++.+.++++++ +|+.+..+.+|.|+|.|-|.+....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF---~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRF---RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceE---ecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 346688888888754321110 33344 44445566665 8888999999999999999987432
Q ss_pred --CCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce--EEEEecccccCCCCCCCCccceEEEEEEEEEec
Q 012089 327 --SQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK--EFTLDLLKHTNISDPKDMKQRGKIVVELTYVPF 395 (471)
Q Consensus 327 --~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~ 395 (471)
.+.+.+.|.-.|..+...++|.-.++.+.+...... .....|..... ...-..|-|.++++.+|.
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~----e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGP----ESKVPVGILDLRLELLPN 152 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCC----CCccceeEEEEEEEeecC
Confidence 356888888888777778999999999887755443 45555543211 123578999999999984
No 225
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=96.22 E-value=0.0042 Score=52.73 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=23.3
Q ss_pred CCCCCCcEEEEEEcC--eeeeeC---CCCCCcCC
Q 012089 443 GENHNNPYAIILYKG--DKKRTK---KNSRPCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~--~~~kTk---~t~nP~Wn 471 (471)
..+.+||||++++++ ++.||+ +|.||+||
T Consensus 14 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wn 47 (126)
T cd08678 14 AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWD 47 (126)
T ss_pred CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccC
Confidence 446899999999974 345776 88999998
No 226
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.62 E-value=0.077 Score=47.74 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=60.0
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEc
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDW 337 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~ 337 (471)
..++|+|+++.++...+ ...+-||.+.+ +++... ...|+.+.-+.++.|||...|.+. + +....|.|.+|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35789999999998622 34667777644 444332 224554444567999999999765 2 3367899999997
Q ss_pred CCCC----------------CCCeeEEEEEECcc
Q 012089 338 DKVG----------------GHDRLGMQLVPLKL 355 (471)
Q Consensus 338 d~~~----------------~d~~lG~~~i~L~~ 355 (471)
.... .+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6422 13578888877765
No 227
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.60 E-value=0.022 Score=61.39 Aligned_cols=90 Identities=22% Similarity=0.344 Sum_probs=68.2
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCc----cccceeeeeec-CCCCCeEe-eEEEEE-eecCCCCeEEEEEE
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE----KLPWKKTTVKK-KNLNPEWN-ENFKLV-VKEPESQILQLQVF 335 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~----~~~~~kT~v~~-~t~nP~wn-e~f~f~-v~~~~~~~L~v~v~ 335 (471)
.+.+.|+|+++.=|..++. ..||.|.+-+- ....++|++.. +++||+|+ |.|.|. |.-++-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 5678999999998887653 48999988542 12345676654 78999999 567775 33445578999999
Q ss_pred EcCCCCCCCeeEEEEEECcccCCCC
Q 012089 336 DWDKVGGHDRLGMQLVPLKLLTPHE 360 (471)
Q Consensus 336 d~d~~~~d~~lG~~~i~L~~l~~~~ 360 (471)
+.+. +++|+=.+|+..+..+-
T Consensus 778 eEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred ccCC----ceeeeeccchhcccCcc
Confidence 9863 59999999999998874
No 228
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.56 E-value=0.018 Score=49.19 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCCCcEEEEEEcCe-------eeeeC---CCCCCcCC
Q 012089 445 NHNNPYAIILYKGD-------KKRTK---KNSRPCLE 471 (471)
Q Consensus 445 ~~~dpyv~v~~~~~-------~~kTk---~t~nP~Wn 471 (471)
+.+||||++++.+. +.||+ +|.||+||
T Consensus 19 ~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wn 55 (133)
T cd04033 19 GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWN 55 (133)
T ss_pred CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEe
Confidence 57999999999765 23665 99999998
No 229
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.54 E-value=0.076 Score=46.90 Aligned_cols=91 Identities=24% Similarity=0.285 Sum_probs=59.6
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
.++|++....++...+ ....+-||.+.+ +++... ...|.....+.++.|||...|.+. + +....|.+.+|+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788877776421 234566777754 433221 223333333368999999999864 2 23678999999987
Q ss_pred CCC--CCCeeEEEEEECccc
Q 012089 339 KVG--GHDRLGMQLVPLKLL 356 (471)
Q Consensus 339 ~~~--~d~~lG~~~i~L~~l 356 (471)
..+ .+..||.+.++|-+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 544 457899999998764
No 230
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.29 E-value=0.039 Score=52.83 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=76.9
Q ss_pred cCCceEEEEEEEEccccccCcc--CCCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEc
Q 012089 260 KKPVGILHVKVVRASKLLKKDF--LGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDW 337 (471)
Q Consensus 260 ~~~~G~L~V~v~~a~~L~~~d~--~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~ 337 (471)
....|+|.+++..+++|+-... +-.-+-||++..+.+. ..+|.+.....-=.|.|+|+..+.+. ..+.+-||.|
T Consensus 47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh--~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW 122 (442)
T KOG1452|consen 47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQH--PARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSW 122 (442)
T ss_pred ecccceEEEEEecccccccChhccCceeeeeeeeeecccC--ccccccccCCCCccchhhceeecccc--eeeeEEEeec
Confidence 3456999999999999975432 3456899999887544 34666655555557899999988753 5789999999
Q ss_pred CCCCCCCeeEEEEEECcccCCC-CceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 338 DKVGGHDRLGMQLVPLKLLTPH-ETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 338 d~~~~d~~lG~~~i~L~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
+...++++.-.-.+.+..+... ..+...+. -+++|++.+++.+..
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rqspd~~~Al~------------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQSPDRVVALY------------LEPRGQPPLRLPLAD 168 (442)
T ss_pred CchhhccccccchhhhhhhhhcCCcceeeee------------cccCCCCceecccCC
Confidence 8766666422222333333222 22222222 356788888877653
No 231
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=94.83 E-value=0.028 Score=46.98 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=22.9
Q ss_pred EEEEEeeeecCCCCCCCCcEEEEEEc-Ce---eeeeC---CCCCCcCC
Q 012089 431 LSVLVQGAEDVEGENHNNPYAIILYK-GD---KKRTK---KNSRPCLE 471 (471)
Q Consensus 431 L~V~v~~Ak~L~~~~~~dpyv~v~~~-~~---~~kTk---~t~nP~Wn 471 (471)
|.|+|++|+||++...+= -.--.-. ++ +.||| +|+||+||
T Consensus 1 L~V~V~~A~~L~~~sDPY-V~l~v~~~~~~~~~~KTk~i~~TlnPvWn 47 (118)
T cd08686 1 LNVIVHSAQGFKQSANLY-CTLEVDSFGYFVKKAKTRVCRDTTEPNWN 47 (118)
T ss_pred CEEEEEeCCCCCCCCCCE-EEEEEcCccccceeeeeeeecCCCCCccc
Confidence 579999999997520000 0000000 11 23777 99999998
No 232
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.79 E-value=0.12 Score=46.31 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE--cCccccc-eeeeeec----CCCCCeEeeEEEEEee--c-CCCCeEEEE
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPW-KKTTVKK----KNLNPEWNENFKLVVK--E-PESQILQLQ 333 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~-~kT~v~~----~t~nP~wne~f~f~v~--~-~~~~~L~v~ 333 (471)
..+.|+|.++.+++........|-|+.+.+ +++.... ..|+... -...+.|||...|.+. + +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999988765456788888865 4433321 1333211 1235779999999875 2 336789999
Q ss_pred EEEcCCCC---------CCCeeEEEEEECccc
Q 012089 334 VFDWDKVG---------GHDRLGMQLVPLKLL 356 (471)
Q Consensus 334 v~d~d~~~---------~d~~lG~~~i~L~~l 356 (471)
+|+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99987543 346899999988663
No 233
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.15 E-value=0.48 Score=37.32 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=60.0
Q ss_pred CCCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCce
Q 012089 283 GTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETK 362 (471)
Q Consensus 283 g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~ 362 (471)
|.++-.+.+.+++... .+|.-+. ..+..|++.|.+.+.. +.+|+|.||-+|. ..+-|..-+.|++.. +
T Consensus 7 ~~~eV~avLklDn~~V--gqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~~----~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVV--GQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDER----H 74 (98)
T ss_pred cccceEEEEEEcCeEE--eeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhhc----c
Confidence 3467888898886543 3565533 3477899999999974 5789999998873 346677777787732 1
Q ss_pred EEEEecccccCCCCCCCCccceEEEEEEEE
Q 012089 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTY 392 (471)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y 392 (471)
...++ -.+.|.+..+++|
T Consensus 75 ~~~~~------------lepqg~l~~ev~f 92 (98)
T cd08687 75 EVQLD------------MEPQLCLVAELTF 92 (98)
T ss_pred cceec------------cccccEEEEEEEe
Confidence 22232 3567888888887
No 234
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.14 E-value=0.16 Score=44.91 Aligned_cols=74 Identities=24% Similarity=0.338 Sum_probs=51.8
Q ss_pred CCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCCCeeEEEEEECccc
Q 012089 283 GTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGHDRLGMQLVPLKLL 356 (471)
Q Consensus 283 g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l 356 (471)
..+|-||.+.+ ++.... ..+|+.+.-+..+.|||...|++. + +....|.|++||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45678888765 332221 124555555567889999999875 2 23678999999998655677899999998764
No 235
>PLN03008 Phospholipase D delta
Probab=94.07 E-value=0.039 Score=60.29 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEEcCeee-eeC---CCCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKK-RTK---KNSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~-kTk---~t~nP~Wn 471 (471)
.+++||||++.++++++ ||+ ++.||+||
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWN 105 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWD 105 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcc
Confidence 46799999999987755 787 88999998
No 236
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=93.79 E-value=1.1 Score=40.09 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCccccceeeeee--cCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCC
Q 012089 284 TSDPYVKLSLTGEKLPWKKTTVK--KKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTP 358 (471)
Q Consensus 284 ~~DPyv~v~l~~~~~~~~kT~v~--~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~ 358 (471)
+..-|+++.++++.. .+|+.. .....=.|||.|.+.+... -+.|.++||.... ..+..|+++.+|+-....
T Consensus 36 ~~~~~ikl~~N~k~V--~~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEV--SRTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEE--EeeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 456799999997655 355443 2344456899999999764 4689999999986 678899999999865543
No 237
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.70 E-value=0.4 Score=41.55 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=44.0
Q ss_pred EcCcccc--ceeeeeecCC-CCCeEeeEEEEEee--c-CCCCeEEEEEEEcCCCCCC----CeeEEEEEECccc
Q 012089 293 LTGEKLP--WKKTTVKKKN-LNPEWNENFKLVVK--E-PESQILQLQVFDWDKVGGH----DRLGMQLVPLKLL 356 (471)
Q Consensus 293 l~~~~~~--~~kT~v~~~t-~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d~~~~d----~~lG~~~i~L~~l 356 (471)
.+++... ...|+...-+ .++.|||...|.+. + +....|.|.||+.+....+ ..||.+.++|-+.
T Consensus 12 ~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 12 HGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp ETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 3544443 2356555555 79999999999875 2 3467899999998865554 5899999998765
No 238
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.63 E-value=0.44 Score=42.90 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEE--cCccccceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLPWKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
.++|+|.++..+. .+......-||++.+ ++......+|+.+.-+.++.|||...|.+. + +....|.|.||+..
T Consensus 11 ~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677788776432 222222335666533 433333335666666678999999888865 2 23678999999974
No 239
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.15 Score=50.23 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=34.7
Q ss_pred cceEEEEEEeeeecCCC----CCCCCcEEEEEEcCeee-----eeC---CCCCCcC
Q 012089 427 GAGLLSVLVQGAEDVEG----ENHNNPYAIILYKGDKK-----RTK---KNSRPCL 470 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~----~~~~dpyv~v~~~~~~~-----kTk---~t~nP~W 470 (471)
..|-+.|.|++|++|-. +..++|||+||+..... ||| +|.+|.|
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~ply 322 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLY 322 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhh
Confidence 67899999999999975 34799999999865432 676 7877754
No 240
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=92.47 E-value=1.3 Score=40.31 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=42.6
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCC--CCeeEEEEEECc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG--HDRLGMQLVPLK 354 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~~--d~~lG~~~i~L~ 354 (471)
..++|.+...+.+|.|+|++.+.+... ....|.|++++...-.+ ...+|.+-+||-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 356888899999999999999988633 35679998888653222 257999999984
No 241
>PLN02223 phosphoinositide phospholipase C
Probab=91.27 E-value=0.32 Score=51.04 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.7
Q ss_pred cceEEEEEEeeeecCCC--------CCCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG--------ENHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~--------~~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
....|.|.|+.|++++. ...+||||+|.+.|- .+||+ ++.||+||
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWn 467 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWG 467 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceec
Confidence 35689999999998741 135899999998652 22555 77899998
No 242
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.96 E-value=2.6 Score=38.42 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=42.5
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCC-CCC---CeeEEEEEECc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-GGH---DRLGMQLVPLK 354 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~-~~d---~~lG~~~i~L~ 354 (471)
..++|.+...+.+|.|+|++.+.+... ....|.|++++.... .+| ..+|.+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346888888899999999999988632 366799999886522 122 47999999985
No 243
>PLN02952 phosphoinositide phospholipase C
Probab=89.22 E-value=0.68 Score=49.53 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=33.2
Q ss_pred ceEEEEEEeeeecCCC--C-------CCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEG--E-------NHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~--~-------~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
...|.|.|+.|++++. . ..+||||+|.+-+ .++||+ ++.||+||
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWn 529 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWN 529 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccC
Confidence 4689999999998742 1 2359999999865 233777 66999998
No 244
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=89.17 E-value=6.5 Score=35.65 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=62.6
Q ss_pred hcccccCCceeeeccCcccccccCCceE-EEEEEEEccccccCccCCCCCcEEEEEEcCcc--ccceeeeeecCCCCCeE
Q 012089 238 AGIYIWPQTYEIPILDASSVAIKKPVGI-LHVKVVRASKLLKKDFLGTSDPYVKLSLTGEK--LPWKKTTVKKKNLNPEW 314 (471)
Q Consensus 238 ~~~~v~P~~~~i~l~~~~~~~~~~~~G~-L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~--~~~~kT~v~~~t~nP~w 314 (471)
...+|+|..+.+.-.. .+..++++ ++|.+.+..+- ...|.-.++.+... .....|.+...+.+|.|
T Consensus 3 N~LYVYP~~l~~~~~k----~~~kaRNI~V~V~lrd~D~~-------~~~~l~~I~~g~g~~~~~~~~s~V~yh~k~P~f 71 (185)
T cd08697 3 NHLYVYPLHLKYDSQK----TFAKARNIAVCIEFRDSDEE-------DAKPLKCIYYGPGGGFTTSAYAAVLHHNQNPEF 71 (185)
T ss_pred ceEEEcccEEEecccc----cccccccEEEEEEEEeCCCC-------cCccceEEecCCCCCcceEEEEEEEEcCCCCcc
Confidence 3467888877655221 12223332 55665554321 11232233333221 23457888888999999
Q ss_pred eeEEEEEeecC--CCCeEEEEEEEcCCC--C-------CCCeeEEEEEECcc
Q 012089 315 NENFKLVVKEP--ESQILQLQVFDWDKV--G-------GHDRLGMQLVPLKL 355 (471)
Q Consensus 315 ne~f~f~v~~~--~~~~L~v~v~d~d~~--~-------~d~~lG~~~i~L~~ 355 (471)
+|++.+.+.-. ...-|.|+.|+.+.. . ....+|.+.+||-.
T Consensus 72 ~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 72 YDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 99999887632 356799999997521 1 12458888888755
No 245
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=89.05 E-value=2.3 Score=34.42 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=45.5
Q ss_pred EEEEEEEccccccCccCCCCCcEEEEEE--cCcccc-ceeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEEEcC
Q 012089 266 LHVKVVRASKLLKKDFLGTSDPYVKLSL--TGEKLP-WKKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVFDWD 338 (471)
Q Consensus 266 L~V~v~~a~~L~~~d~~g~~DPyv~v~l--~~~~~~-~~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~d~d 338 (471)
+.+.+..+.+..-......+|-||.+.+ +++... ...|+.+.-+..+.|||...|.+. + +....|.+.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4456666666554432223578888865 433332 224555444556899999998765 2 33678999999975
No 246
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.35 E-value=0.97 Score=48.23 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=32.7
Q ss_pred ceEEEEEEeeeecCC----C-----CCCCCcEEEEEEcC-----eeeeeC---CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVE----G-----ENHNNPYAIILYKG-----DKKRTK---KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~----~-----~~~~dpyv~v~~~~-----~~~kTk---~t~nP~Wn 471 (471)
...|.|+|+.|++++ . ...+||||+|.+-+ .++||+ ++-||+||
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~ 511 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWD 511 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccC
Confidence 467999999998753 1 13579999999853 224777 66899998
No 247
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.11 E-value=2.4 Score=38.39 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=35.0
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecCC--CCeEEEEEEEcCCCCC---CCeeEEEEEECcc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEPE--SQILQLQVFDWDKVGG---HDRLGMQLVPLKL 355 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~L~v~v~d~d~~~~---d~~lG~~~i~L~~ 355 (471)
....|.+..++.+|.|+|+|.+.+.... ...|.|++++...-.+ +..+|.+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 3457788888899999999999887433 5689999999764322 1689999999987
No 248
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.06 E-value=0.96 Score=48.37 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=33.5
Q ss_pred cceEEEEEEeeeecCCC---C------CCCCcEEEEEEcCe-----eeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEG---E------NHNNPYAIILYKGD-----KKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~---~------~~~dpyv~v~~~~~-----~~kTk---~t~nP~Wn 471 (471)
....|.|.|+.|++++. + ..+||||+|.+-+- ++||+ ++.||+||
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wn 528 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWN 528 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccC
Confidence 34679999999998641 1 24799999998542 23666 77899998
No 249
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.20 E-value=0.98 Score=48.93 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=33.9
Q ss_pred ceEEEEEEeeeecCCCC--CCCCcEEEEEEcC-----eeeeeC----CCCCCcCC
Q 012089 428 AGLLSVLVQGAEDVEGE--NHNNPYAIILYKG-----DKKRTK----KNSRPCLE 471 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~~--~~~dpyv~v~~~~-----~~~kTk----~t~nP~Wn 471 (471)
.-.|.|.|+.||.|+.+ +..-|||++.+-| .++||+ +.+||+||
T Consensus 1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn 1118 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWN 1118 (1267)
T ss_pred ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCC
Confidence 35789999999999964 3456999998754 333555 88999998
No 250
>PLN02964 phosphatidylserine decarboxylase
Probab=83.30 E-value=1.4 Score=47.68 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=33.3
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEE-EEcCeeeeeC---CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAII-LYKGDKKRTK---KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v-~~~~~~~kTk---~t~nP~Wn 471 (471)
-+|++.++|.+|+ .+..|||+.+ ++|.+..||. +|.||+||
T Consensus 52 ~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~ 96 (644)
T PLN02964 52 FSGIALLTLVGAE----MKFKDKWLACVSFGEQTFRTETSDSTDKPVWN 96 (644)
T ss_pred ccCeEEEEeehhh----hccCCcEEEEEEecceeeeeccccccCCcccc
Confidence 6899999999998 3346997766 5677777987 99999998
No 251
>PLN02228 Phosphoinositide phospholipase C
Probab=82.95 E-value=1.8 Score=46.03 Aligned_cols=43 Identities=19% Similarity=0.070 Sum_probs=31.6
Q ss_pred ceEEEEEEeeeecCCC---C------CCCCcEEEEEEcCee-----eeeC---CCCCCcC
Q 012089 428 AGLLSVLVQGAEDVEG---E------NHNNPYAIILYKGDK-----KRTK---KNSRPCL 470 (471)
Q Consensus 428 ~g~L~V~v~~Ak~L~~---~------~~~dpyv~v~~~~~~-----~kTk---~t~nP~W 470 (471)
...|.|.|++|++|+. . ..+||||+|.+.+-. .||+ ++.||+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W 489 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIW 489 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceE
Confidence 4579999999998731 1 248999999985422 2777 5579999
No 252
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.86 E-value=1.2 Score=38.06 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=22.2
Q ss_pred CCCCCCcEEEEEEcCe---eeeeC---CCCC--CcCC
Q 012089 443 GENHNNPYAIILYKGD---KKRTK---KNSR--PCLE 471 (471)
Q Consensus 443 ~~~~~dpyv~v~~~~~---~~kTk---~t~n--P~Wn 471 (471)
+...+||||++.+.+. ++||. +++| |.||
T Consensus 21 g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FN 57 (133)
T cd08374 21 GEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFN 57 (133)
T ss_pred CccccCeEEEEEEccCcccccccceEEecCCCCcEEe
Confidence 4446999999999764 23676 8888 9987
No 253
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=74.75 E-value=9.6 Score=34.31 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=39.0
Q ss_pred eeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCC-----CCCCeeEEEEEECcc
Q 012089 303 TTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKV-----GGHDRLGMQLVPLKL 355 (471)
Q Consensus 303 T~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~-----~~d~~lG~~~i~L~~ 355 (471)
+++...+.+|.|+|++.+.+... ....|.|++|+.+.- .....+|.+.+||-+
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444448999999999988643 367899999997632 235679999999875
No 254
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=74.49 E-value=8 Score=42.86 Aligned_cols=107 Identities=15% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCcEEEEEEcCccccceeeeeecCC-CCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCceE
Q 012089 285 SDPYVKLSLTGEKLPWKKTTVKKKN-LNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHETKE 363 (471)
Q Consensus 285 ~DPyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~ 363 (471)
.++|+.+.+..... .+|....+. .+|.|++.|........ ..+.+.+-+.+..+....+|.+.++...+..+....
T Consensus 138 ~e~Ylt~~l~~~~~--~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~ 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARY--RRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG 214 (887)
T ss_pred ccchheeeechhhh--hchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc
Confidence 58999998886554 356665666 68999999988776543 578888888887776789999999999999877777
Q ss_pred EEEecccccCCCCCCCCccceEEEEEEEEEeccCC
Q 012089 364 FTLDLLKHTNISDPKDMKQRGKIVVELTYVPFKED 398 (471)
Q Consensus 364 ~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p~~~~ 398 (471)
.+++++..-. ......-.+.+++.|.+....
T Consensus 215 ~~~~Il~~d~----~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 215 GWFPILDNDG----KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred ceeeeeccCC----ccccCCcccceEEeeEeechh
Confidence 7776654311 111222356677888887654
No 255
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.37 E-value=17 Score=29.84 Aligned_cols=84 Identities=15% Similarity=0.128 Sum_probs=44.4
Q ss_pred eeeeeecCCCCCeEeeEEEEEeecC-------CCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCCCc--eEEEEecccc
Q 012089 301 KKTTVKKKNLNPEWNENFKLVVKEP-------ESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPHET--KEFTLDLLKH 371 (471)
Q Consensus 301 ~kT~v~~~t~nP~wne~f~f~v~~~-------~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~l~~~ 371 (471)
..|.+.. +.+|.+|-+-.|.|... .+..+.++++..- ....+.+|.+.+++..+..... ......+...
T Consensus 13 q~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g~ 90 (107)
T PF11618_consen 13 QTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNGERIHGSATLVGV 90 (107)
T ss_dssp EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S--EEEEEEE-BS
T ss_pred eccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCCceEEEEEEEecc
Confidence 3566654 88999998888887632 2567999999875 3345689999999999874433 2333333221
Q ss_pred cCCCCCCCCccceEEEEEEEEE
Q 012089 372 TNISDPKDMKQRGKIVVELTYV 393 (471)
Q Consensus 372 ~~~~~~~~~~~~G~l~l~l~y~ 393 (471)
++..-|.|...++..
T Consensus 91 -------~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 91 -------SGEDFGTLEYWIRLR 105 (107)
T ss_dssp -------SS-TSEEEEEEEEEE
T ss_pred -------CCCeEEEEEEEEEec
Confidence 244789888877653
No 256
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=74.01 E-value=2.6 Score=27.77 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=10.0
Q ss_pred HHHHhheeeeeccC
Q 012089 22 LLVGFFLFIYSKPN 35 (471)
Q Consensus 22 ~~~~~~~~~~~~~~ 35 (471)
++++++++.||||.
T Consensus 26 ~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 26 IVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHhheEEecc
Confidence 56677788888764
No 257
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=73.47 E-value=11 Score=34.00 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=41.8
Q ss_pred cceeeeeecCCCCCeEeeEEEEEeecC--CCCeEEEEEEEcCCCCC------CCeeEEEEEECcc
Q 012089 299 PWKKTTVKKKNLNPEWNENFKLVVKEP--ESQILQLQVFDWDKVGG------HDRLGMQLVPLKL 355 (471)
Q Consensus 299 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~L~v~v~d~d~~~~------d~~lG~~~i~L~~ 355 (471)
....|.+...+.+|.|+|++.+.+... ....|.|+.|+.+.-.+ ...+|-+.+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 345788888999999999999988643 35679999998653211 2458888887753
No 258
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=70.91 E-value=2.1 Score=33.66 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=42.7
Q ss_pred cCCchhHhhhCCCCCCcccCCCCcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 012089 49 ELDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVRTTAQPI 103 (471)
Q Consensus 49 ~~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~~~~~~~ 103 (471)
+.|.+.++--|++||+|+--.|.-.-.-.|.+...+|.+.+.+++-.-..++.++
T Consensus 26 k~D~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~i 80 (108)
T KOG4092|consen 26 KKDKKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGI 80 (108)
T ss_pred cccceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHH
Confidence 5566666667889999999999999999999999999998888873333334443
No 259
>PLN02270 phospholipase D alpha
Probab=66.49 E-value=5.8 Score=43.85 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCCCCcEEEEEEcCeee-eeC---C-CCCCcCC
Q 012089 444 ENHNNPYAIILYKGDKK-RTK---K-NSRPCLE 471 (471)
Q Consensus 444 ~~~~dpyv~v~~~~~~~-kTk---~-t~nP~Wn 471 (471)
++.+||||.+.+++.+. ||+ + ..||+||
T Consensus 44 ~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~ 76 (808)
T PLN02270 44 KGESQLYATIDLEKARVGRTRKIENEPKNPRWY 76 (808)
T ss_pred CCCCCceEEEEeCCcEEEEEeecCCCCCCCccc
Confidence 35899999999998877 997 3 4699997
No 260
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=61.55 E-value=2.8 Score=45.45 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHHhhc-cCCceeeeEEEeEeeCCCCCCEEeEEEEEeC-CCCeEEEEe
Q 012089 72 ERVDWLNRFLSDMWPYLDKA--ICANVRTTAQPIFDEY-SGKFKIESIEFENLTLGTLPPTIYGIRVYET-NENQLVMEP 147 (471)
Q Consensus 72 E~~~WlN~~l~~~Wp~~~~~--~~~~i~~~~~~~l~~~-~p~~~i~~i~~~~~~lG~~~P~i~~vr~~~~-~~~~~~le~ 147 (471)
|..-|+|.++.+..--+.+. ..+.+.+.++.++... .|.| ++.+--.++.-|..||.|++-++... ..+..-++.
T Consensus 334 ~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~-~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 334 EGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSY-IEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred hhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchh-hhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 46789999999998654433 5566677777777664 6888 99999999999999999999999876 455667889
Q ss_pred eeeEecCCcEEEEEEE
Q 012089 148 ALRWAGNPNIVLVLKL 163 (471)
Q Consensus 148 ~~~~~~~~~i~l~~~~ 163 (471)
|+.|.||..+.++.++
T Consensus 413 di~y~~d~~~~i~~~v 428 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRV 428 (795)
T ss_pred ceeecccccccccccc
Confidence 9999998877766654
No 261
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=61.16 E-value=10 Score=41.23 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=32.5
Q ss_pred EEEEEEeeeecCCCC-------CCCCcEEEEEEcCeee-----eeC----CCCCCcCC
Q 012089 430 LLSVLVQGAEDVEGE-------NHNNPYAIILYKGDKK-----RTK----KNSRPCLE 471 (471)
Q Consensus 430 ~L~V~v~~Ak~L~~~-------~~~dpyv~v~~~~~~~-----kTk----~t~nP~Wn 471 (471)
.|.|.|.++++++.. ..+||||.|.+-|-.. ||| ++-||.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~ 674 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWD 674 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccC
Confidence 899999999977641 3689999998765332 666 77799997
No 262
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=50.83 E-value=4 Score=43.84 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=57.1
Q ss_pred CCCcEEEEEEcCccccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEEEcCCCCCCCeeEEEEEECcccCCC-Cce
Q 012089 284 TSDPYVKLSLTGEKLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVFDWDKVGGHDRLGMQLVPLKLLTPH-ETK 362 (471)
Q Consensus 284 ~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~d~d~~~~d~~lG~~~i~L~~l~~~-~~~ 362 (471)
.-|||+.+.+.-... ..+.+...+.+|.|+|+|...+.. ...+.+.+|.......+.+...+++-.+++... ...
T Consensus 27 al~~y~~v~vk~~~~--~~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~ 102 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQG--AENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQ 102 (694)
T ss_pred hhhhhheeccceeec--ccccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhh
Confidence 458898888764332 244456789999999999999764 467899999876444443333333333333221 122
Q ss_pred EEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 363 EFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 363 ~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
..|.. .++.|++...+.+..
T Consensus 103 ~~w~~------------~~~~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 103 RLWVL------------IEELGTLLKPAALTG 122 (694)
T ss_pred hhccc------------cccccceeeeecccC
Confidence 33433 234577777776654
No 263
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=48.04 E-value=2.1e+02 Score=28.47 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.0
Q ss_pred ceEEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCC--eEeeEEEEEeecCCCCeEEEEEEEcCCC
Q 012089 263 VGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNP--EWNENFKLVVKEPESQILQLQVFDWDKV 340 (471)
Q Consensus 263 ~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP--~wne~f~f~v~~~~~~~L~v~v~d~d~~ 340 (471)
.--|-|.|.+-.++.. ...-|+.++.+.... +|..+.-+..- .-.+.....+. ....+|++.+|-.. +
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~Gr~d~---TT~~IpTsKK~RI~IqqRV~IkIR-QcDnTLkI~lfKKk-L 126 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFSTDKYDF---TTDEIPTNKKNRIHIDQRVDIKIR-QCDETLRVDLFTTK-L 126 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEcCceEE---EccccccCcCceEEEeeeeeeeee-ecCceEEEEEEecc-c
Confidence 3456777777665543 346788888875443 44333222221 22244444443 34678999999876 4
Q ss_pred CCCCeeEEEEEECcc--cCCCCceEEEEecccccCCCCCCCCccceEEEEEEE
Q 012089 341 GGHDRLGMQLVPLKL--LTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELT 391 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~--l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~ 391 (471)
.+...||.+.+.+.+ +...-++..|+.+.+ .+...+.|.+++.
T Consensus 127 vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~k--------DGq~~cRIqLSFh 171 (508)
T PTZ00447 127 TKKVHIGQIKIDINASVISKSFPKNEWFVCFK--------DGQEICKVQMSFY 171 (508)
T ss_pred cceeEEEEEEecccHHHHhccCCccceEEEec--------CCceeeeEEEEeh
Confidence 567789999999865 234446667776643 3667788777764
No 264
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=45.37 E-value=12 Score=32.93 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=11.4
Q ss_pred eeeeeC---CCCCCcCC
Q 012089 458 DKKRTK---KNSRPCLE 471 (471)
Q Consensus 458 ~~~kTk---~t~nP~Wn 471 (471)
++.||+ +|+||+||
T Consensus 41 ~k~KT~v~k~TlnPvfN 57 (155)
T cd08690 41 QSGKTSTIKDTNSPEYN 57 (155)
T ss_pred ceeecCcccCCCCCccc
Confidence 455776 99999998
No 265
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=41.70 E-value=24 Score=28.68 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=34.8
Q ss_pred CchhHhhhCCCCCCcccCCCCcchHHHHHHHHHHhhhHHHHHH
Q 012089 51 DTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAIC 93 (471)
Q Consensus 51 ~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~ 93 (471)
|..-++--|++||+|+.-.|..-...++.+-..+|-+...++.
T Consensus 28 Dt~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~ 70 (104)
T PF10206_consen 28 DTPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYIN 70 (104)
T ss_pred CCchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhc
Confidence 3333333467999999999999999999999999998887775
No 266
>PLN02352 phospholipase D epsilon
Probab=41.13 E-value=22 Score=39.23 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.5
Q ss_pred CcEEEEEEcCeee-eeCCCCCCcCC
Q 012089 448 NPYAIILYKGDKK-RTKKNSRPCLE 471 (471)
Q Consensus 448 dpyv~v~~~~~~~-kTk~t~nP~Wn 471 (471)
||||.+.+++.+. ||++..||+||
T Consensus 37 ~~y~tv~~~~~~v~rt~~~~~p~w~ 61 (758)
T PLN02352 37 ATYVTIKIGNKKVAKTSHEYDRVWN 61 (758)
T ss_pred CceEEEEeCCcEEecCCCCCCCccc
Confidence 9999999998877 99866699997
No 267
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=40.68 E-value=15 Score=31.58 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.3
Q ss_pred CeeeeeC---CCCCCcC-C
Q 012089 457 GDKKRTK---KNSRPCL-E 471 (471)
Q Consensus 457 ~~~~kTk---~t~nP~W-n 471 (471)
+++.||+ +|+||+| |
T Consensus 44 ~~~~kT~v~~~tlnP~W~n 62 (137)
T cd08691 44 GQECRTSIVENTINPVWHR 62 (137)
T ss_pred cceeeeeeEcCCCCCceEc
Confidence 3455776 8899999 6
No 268
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=36.70 E-value=1.5e+02 Score=33.38 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=44.5
Q ss_pred eEEEEEEEEccccccCccCCCCCcEEEEEE----cCccccc-eeeeeecCCCCCeEeeEEEEEee--c-CCCCeEEEEEE
Q 012089 264 GILHVKVVRASKLLKKDFLGTSDPYVKLSL----TGEKLPW-KKTTVKKKNLNPEWNENFKLVVK--E-PESQILQLQVF 335 (471)
Q Consensus 264 G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l----~~~~~~~-~kT~v~~~t~nP~wne~f~f~v~--~-~~~~~L~v~v~ 335 (471)
.-++|+++++.++.. ....|-+|.|.. |++...+ ..|+-+..+.+|.||+..+|.+. + |....|.+.||
T Consensus 343 ~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 343 RPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred CceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 347788888776532 233456655543 4444433 34444455778999999888876 3 33567888888
Q ss_pred Ec
Q 012089 336 DW 337 (471)
Q Consensus 336 d~ 337 (471)
.-
T Consensus 420 ~v 421 (1076)
T KOG0904|consen 420 AV 421 (1076)
T ss_pred Ee
Confidence 75
No 269
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=33.13 E-value=13 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=11.7
Q ss_pred hhHHHHHHhheeeeeccCC
Q 012089 18 LPLGLLVGFFLFIYSKPND 36 (471)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (471)
+++++.+|++.|.|+++++
T Consensus 17 ~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 3444556777887776544
No 270
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=32.05 E-value=27 Score=38.82 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=55.6
Q ss_pred cccCCceEEEEEEEEccccccCccCCCCCcEEEEEEcCc--cccceeeeeecCCCCCeEeeEEEEEeecCCCCeEEEEEE
Q 012089 258 AIKKPVGILHVKVVRASKLLKKDFLGTSDPYVKLSLTGE--KLPWKKTTVKKKNLNPEWNENFKLVVKEPESQILQLQVF 335 (471)
Q Consensus 258 ~~~~~~G~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~L~v~v~ 335 (471)
..+...|.+.+.+.+|.++.. ...-||...+..- -..+.+|.++.+|..|.||+.|+..+.. .+.+++..+
T Consensus 753 eSpl~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ 825 (1112)
T KOG4269|consen 753 ESPLLYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKT 825 (1112)
T ss_pred cCcccccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh--ccccchhhh
Confidence 466678999999999998874 3467888766432 1234588999999999999999888753 566777777
Q ss_pred EcC
Q 012089 336 DWD 338 (471)
Q Consensus 336 d~d 338 (471)
+.+
T Consensus 826 ek~ 828 (1112)
T KOG4269|consen 826 EKS 828 (1112)
T ss_pred ccc
Confidence 755
No 271
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=31.92 E-value=16 Score=28.50 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=19.1
Q ss_pred hhcccccchhHHHHHHhheeeeec--cCCcccccccccccccC
Q 012089 10 VLGFGFIGLPLGLLVGFFLFIYSK--PNDDQVEEPLVTPLCEL 50 (471)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~ 50 (471)
+-|++.+|+++.+++-.+.-+|+. ..|||++.++.|+.--+
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrPvI~~ 72 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRPVIGL 72 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccc
Confidence 345665555555432222222433 22333556677766443
No 272
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=31.11 E-value=18 Score=24.92 Aligned_cols=18 Identities=6% Similarity=0.290 Sum_probs=12.5
Q ss_pred HHHHHHhheeeeeccCCc
Q 012089 20 LGLLVGFFLFIYSKPNDD 37 (471)
Q Consensus 20 ~~~~~~~~~~~~~~~~~r 37 (471)
+++.+|.+.|.|+.++|+
T Consensus 20 ~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 20 ALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHhCCCcch
Confidence 345678888888876554
No 273
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=31.02 E-value=67 Score=35.92 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=34.0
Q ss_pred cceEEEEEEeeeecCCCCCCCCcEEEEEEcC---eee----eeC----CCCCCcCC
Q 012089 427 GAGLLSVLVQGAEDVEGENHNNPYAIILYKG---DKK----RTK----KNSRPCLE 471 (471)
Q Consensus 427 ~~g~L~V~v~~Ak~L~~~~~~dpyv~v~~~~---~~~----kTk----~t~nP~Wn 471 (471)
.++.++|+|++|+=|..+ .+..||+|-+=+ +.. ||+ ++.||+||
T Consensus 701 IA~t~sV~VISgqFLSdr-kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~ 755 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDR-KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYE 755 (1189)
T ss_pred EEeeEEEEEEeeeecccc-ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccc
Confidence 678899999999988764 567899998633 222 454 88999997
No 274
>PF14356 DUF4403: Domain of unknown function (DUF4403)
Probab=30.61 E-value=3.3e+02 Score=28.22 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEEEEEEeeCCCCCCceeEEEEEcCCCceEEEEEEEeCCCccccchhhHHHHHHHHHhhhcccccC
Q 012089 177 IFAAPRITLKPLVPTFPCFATMVVSLMERPHVDFGIKILGGDIMSIPGLYQFIQKCITKYVAGIYIWP 244 (471)
Q Consensus 177 ~~g~~rv~l~pl~~~~P~~~~~~~sf~~~P~id~~~~~~g~~i~~~P~l~~~i~~~i~~~l~~~~v~P 244 (471)
+.|++.+.=+|..+. .+=+++| -++||++..-+ . -.-...-+.+..|.+.+++.++.|
T Consensus 309 ~~G~i~l~G~P~yD~----~~~~l~l---~dld~~~~t~~--~-l~~~a~wl~~~~i~~~i~~~~~~~ 366 (427)
T PF14356_consen 309 LNGTIYLSGRPVYDP----ATQTLRL---EDLDFDLDTKN--F-LLKTAAWLLHGRIRKAIEEKLVFD 366 (427)
T ss_pred EEEEEEEEEEEEECC----CCCEEEE---EeeEEEecccc--h-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555555555554443 1222222 56777776542 1 122234455777777777776554
No 275
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.79 E-value=4.3e+02 Score=23.33 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=30.5
Q ss_pred eEeeEEEEEeecC--C-CCeEEEEEEEcCCCCCCCeeEEEEEECc
Q 012089 313 EWNENFKLVVKEP--E-SQILQLQVFDWDKVGGHDRLGMQLVPLK 354 (471)
Q Consensus 313 ~wne~f~f~v~~~--~-~~~L~v~v~d~d~~~~d~~lG~~~i~L~ 354 (471)
+||--++..+... - =..+.+.||..|..++|-..|...+++-
T Consensus 65 v~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg~~hiP 109 (187)
T KOG4027|consen 65 VINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYGMLHIP 109 (187)
T ss_pred EEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeeeeEecC
Confidence 5776665555432 2 2468999999999999999988777654
No 276
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.65 E-value=20 Score=30.41 Aligned_cols=21 Identities=38% Similarity=0.773 Sum_probs=14.3
Q ss_pred ccchhHHHHHHhheeeeeccC
Q 012089 15 FIGLPLGLLVGFFLFIYSKPN 35 (471)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~ 35 (471)
++|+++|+++|+++..+..+.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 456888888887766554443
No 277
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=24.41 E-value=27 Score=28.68 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=2.0
Q ss_pred hcccccchhHHHHHHhheeeeecc
Q 012089 11 LGFGFIGLPLGLLVGFFLFIYSKP 34 (471)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~ 34 (471)
.|.|++-+++|+++.+-||.+.||
T Consensus 27 aGIGiL~VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRR 50 (118)
T ss_dssp -SSS--------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeec
Confidence 566666666666665557755543
No 278
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=23.72 E-value=75 Score=28.81 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCchhHhhhCCCCCCcccCCCCcchHHHHHHHHHHhhhHHHHHHHHHH
Q 012089 50 LDTIPLFDLLPEIPLWVKNPDYERVDWLNRFLSDMWPYLDKAICANVR 97 (471)
Q Consensus 50 ~~~~~~~~~~~~~p~w~~~~d~E~~~WlN~~l~~~Wp~~~~~~~~~i~ 97 (471)
.+++.+..++ |.|.+..+|||.++ ||.+...+.+.+.
T Consensus 65 idr~~L~~~v--------f~~~~~~~~L~~i~---hP~v~~~~~~~~~ 101 (194)
T PRK00081 65 LDRAKLRELV--------FSDPEARKKLEAIL---HPLIREEILEQLQ 101 (194)
T ss_pred cCHHHHHHHH--------hCCHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455555553 78999999999998 8887777766654
No 279
>PRK00523 hypothetical protein; Provisional
Probab=22.91 E-value=40 Score=25.36 Aligned_cols=20 Identities=35% Similarity=0.668 Sum_probs=13.3
Q ss_pred hcccccchhHHHHHHhheee
Q 012089 11 LGFGFIGLPLGLLVGFFLFI 30 (471)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (471)
++++++++++|+++|+|+..
T Consensus 8 I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777766544
No 280
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=22.63 E-value=1.2e+02 Score=30.99 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=30.7
Q ss_pred eeEEEEEECcc-cCCCCceEEEEecccccCCCCCCCCccceEEEEEEEEEe
Q 012089 345 RLGMQLVPLKL-LTPHETKEFTLDLLKHTNISDPKDMKQRGKIVVELTYVP 394 (471)
Q Consensus 345 ~lG~~~i~L~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~~G~l~l~l~y~p 394 (471)
.+|.+.||++. +..+..++.|+++....+ .....|.+ ++++|.-
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~-----~~~~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDN-----KSVGEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCC-----CCcCcceE-EEEEeee
Confidence 48999999999 666678889998765322 13345666 6776653
No 281
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.23 E-value=39 Score=28.44 Aligned_cols=15 Identities=33% Similarity=0.859 Sum_probs=9.3
Q ss_pred ccchhHHHHHHhhee
Q 012089 15 FIGLPLGLLVGFFLF 29 (471)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (471)
.+|+++|+++|+++.
T Consensus 12 ~igLvvGi~IG~li~ 26 (138)
T COG3105 12 LIGLVVGIIIGALIA 26 (138)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777776544
No 282
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=21.96 E-value=42 Score=29.26 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=4.2
Q ss_pred heeeeeccCC
Q 012089 27 FLFIYSKPND 36 (471)
Q Consensus 27 ~~~~~~~~~~ 36 (471)
++|+|+.+.+
T Consensus 69 lvf~~c~r~k 78 (154)
T PF04478_consen 69 LVFIFCIRRK 78 (154)
T ss_pred hheeEEEecc
Confidence 3444444433
No 283
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=21.16 E-value=5.7e+02 Score=22.49 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=56.4
Q ss_pred EEEEccccccCccCCCCCcEEEEEEc--Ccc-----cc-ceeeeeecC-----CCCCeEeeEEEEEeecC--CC-CeEEE
Q 012089 269 KVVRASKLLKKDFLGTSDPYVKLSLT--GEK-----LP-WKKTTVKKK-----NLNPEWNENFKLVVKEP--ES-QILQL 332 (471)
Q Consensus 269 ~v~~a~~L~~~d~~g~~DPyv~v~l~--~~~-----~~-~~kT~v~~~-----t~nP~wne~f~f~v~~~--~~-~~L~v 332 (471)
.|.+|.+. ..++-||+..+. ++. .. ...|.+... +-.-.||.-|++.+... .. ..|.+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 45677654 334678887763 211 11 345554432 23357998887776532 22 58999
Q ss_pred EEEEcCCCCCCCeeEEEEEECcccCCCCceEEEEeccc
Q 012089 333 QVFDWDKVGGHDRLGMQLVPLKLLTPHETKEFTLDLLK 370 (471)
Q Consensus 333 ~v~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~l~~ 370 (471)
+||..|..+++...|-..+.|-.- ++ .++...++++
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~lP~~-pG-~h~~~v~~wr 116 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHLPTQ-PG-RHEVEVPTWR 116 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEeCCC-Cc-eEEEEEEEEe
Confidence 999999999999988766655333 33 3344444433
No 284
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.63 E-value=59 Score=26.06 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=8.0
Q ss_pred HHHHHHhheeeeecc
Q 012089 20 LGLLVGFFLFIYSKP 34 (471)
Q Consensus 20 ~~~~~~~~~~~~~~~ 34 (471)
+|+++|+++|.|++|
T Consensus 79 v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 79 VGGLVGFLCWWFVCR 93 (96)
T ss_pred HHHHHHHHhheeEEe
Confidence 334566666655443
No 285
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=20.61 E-value=5e+02 Score=21.58 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=50.3
Q ss_pred EEEEEEEEccccccCccCCCCCcEEEEEEcCccccceeeeeecCCCCCeE-eeEEEEEee--cCCCCeEEEEEEEcCC-C
Q 012089 265 ILHVKVVRASKLLKKDFLGTSDPYVKLSLTGEKLPWKKTTVKKKNLNPEW-NENFKLVVK--EPESQILQLQVFDWDK-V 340 (471)
Q Consensus 265 ~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~--~~~~~~L~v~v~d~d~-~ 340 (471)
.|.++-+.-.++|.-+..+.+.||++++-++.... .|...... .... ...+.+.+. -+-...+.|++|+.+. .
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVF--STSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEE--ETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECCCccEE--Eeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 34444455566666556678899999997765431 11111111 1111 122233322 1124579999999873 3
Q ss_pred CCCCeeEEEEEECcccC
Q 012089 341 GGHDRLGMQLVPLKLLT 357 (471)
Q Consensus 341 ~~d~~lG~~~i~L~~l~ 357 (471)
..++.+.++.+.-.-+.
T Consensus 82 ~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp CCCEEEEEEEEEGGGSB
T ss_pred cccCeEEEEEEeeeeee
Confidence 45677899888877776
Done!