BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012091
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 14/220 (6%)
Query: 258 IGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLT 317
I K + FL+ G+ D ++ P ++ E L R+ +LK G+ +I + ++
Sbjct: 176 ITKILLFLKD-VGIEDNQLGPFLTKNPYILGEELE-ALETRVAYLKSKKFGNAEITQMVS 233
Query: 318 KAPLFLALSFDNIAIKLGFLV-KIGYEC-RTRELAAAMGSVTRTSCENLQKVIGLF-LSY 374
+AP L S + + +LGF ++G +T++L + E +++ + + + +
Sbjct: 234 RAPYLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVCQVEF 293
Query: 375 GLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKH 434
G ++ ++ K P+IL + K L + +YL MG L FP KL RIK
Sbjct: 294 GFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKE 352
Query: 435 RY--------EAKRKTLGDGLSINKLLSVSVERFSTKIKK 466
R+ T +S+++L+S+ E F T+I K
Sbjct: 353 RHMFLIFLGRAQYDPTKPSYISLDQLVSLPDEVFCTEIAK 392
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 8/185 (4%)
Query: 256 EHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKF 315
+HI + + FL+ GL D ++ A+ S E L+ R+ +L+ DI +
Sbjct: 181 KHIKQILLFLKDL-GLEDNQLGPFLTKNYAIFSEDLE-NLKTRVAYLQSKNFSKTDIARM 238
Query: 316 LTKAPLFLALSFDNIAIKLGFLVKIGYEC---RTRELAAAMGSVTRTSCENLQKVIGLF- 371
+ AP L+ S + + +LGF K E +TR+L + + S E +++ + ++
Sbjct: 239 VKNAPFLLSFSVERLDNRLGFFQK-ELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYH 297
Query: 372 LSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDR 431
L G +I M K P++L N + L E +Y+ M ++ FP ++ +
Sbjct: 298 LELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRV-FK 356
Query: 432 IKHRY 436
IK R+
Sbjct: 357 IKERH 361
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 26 LNVFSTNADALDLLLIFLQRMNWFAFVSVTLF--QEIGLNEKEVDSLLEKNPTLRVTPLD 83
L+ + DA +LLL R+++ + L +++GL + ++ L KN + L+
Sbjct: 161 LSKIEKHPDAANLLL----RLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLE 216
Query: 84 KMRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRL---ICFVRDDLDGNIEP----- 135
+++R+ LQS R++ K++ LL+ ++RL + F + +L+ N++
Sbjct: 217 NLKTRVAYLQSKNFSKTDIARMV-KNAPFLLSFSVERLDNRLGFFQKELELNVKKTRDLV 275
Query: 136 MKLERLLTSTETKFLVGFDQKVRLL-LQLGVPQETILHVLNNINLSKAVCLKSVEDIERT 194
++L RLLT + L + +++ L+LG I H++ I + K + +
Sbjct: 276 VRLPRLLTGS----LEPVKENMKVYHLELGFKHNEIQHMV--IKIPKMLTANK-RKLTEI 328
Query: 195 FAYLNPFGG--ADLIVRCPKILN 215
F Y++ +IV+ P++ N
Sbjct: 329 FDYVHNVMNIPHHIIVKFPQLFN 351
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 19/215 (8%)
Query: 270 GLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDN 329
GL D ++ A+ S E L+ R+ +L+ DI + AP L+ S +
Sbjct: 191 GLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFLLSFSVER 249
Query: 330 IAIKLGFLVK---IGYECRTRELAAAMGSVTRTSCENLQKVIGLF-LSYGLSFADIYIMS 385
+ +LGF K + + +TR+L + + S E +++ + ++ L G +I M
Sbjct: 250 LDNRLGFFQKELELSVK-KTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMV 308
Query: 386 KKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLG---YKLDDRI-------KHR 435
K P++L N + L E +Y+ M ++ FP +K+ +R K +
Sbjct: 309 TKIPKMLTANKRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRVFKIKERHLFLAYLGKAQ 368
Query: 436 YEAKRKTLGDGLSINKLLSVSVERFSTKIKKNPIH 470
Y+ + + +S++K +S E F +I K ++
Sbjct: 369 YDPAK---PNYVSLDKFVSFPDEVFCKEIAKASVN 400
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 270 GLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDN 329
G+ D ++ A+ S E L+ R+ +L D+ + + KAP L S +
Sbjct: 199 GIEDNQLGAFLTKNHAIFSEDLE-NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVER 257
Query: 330 IAIKLGFLVKIGYEC---RTRELAAAMGSVTRTSCENLQKVIGLF-LSYGLSFADIYIMS 385
+ +LGF K E +TR+L + + S E +++ + ++ L G +I M
Sbjct: 258 LDNRLGFFQK-ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMI 316
Query: 386 KKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRY--------E 437
+ P++L N L E +++ M ++ FP +L ++K R+
Sbjct: 317 TRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRA 375
Query: 438 AKRKTLGDGLSINKLLSVSVERFSTKIKK 466
+ +S++KL+S+ E F +I K
Sbjct: 376 QYDPAKPNYISLDKLVSIPDEIFCEEIAK 404
>sp|Q9K934|GCST_BACHD Aminomethyltransferase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gcvT PE=3
SV=1
Length = 365
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 262 VEFLRSFAGLSDQEIFRIF-------LVFPAVISASRERKLRPRIDFLKQCGLGSEDIFK 314
V L S G + ++ F ++ +++ +I A +E + P CGLG+ D +
Sbjct: 182 VNVLLSRTGYTGEDGFELYCLAEDAPVLWKKLIEAGKEHGVVP-------CGLGARDTLR 234
Query: 315 FLTKAPLF---LALSFDNIAIKLGFLVKIGYE 343
F K PL+ L I +GF VK+ E
Sbjct: 235 FEAKLPLYGQELTKDISPIEAGIGFAVKVDKE 266
>sp|Q99551|MTERF_HUMAN Transcription termination factor, mitochondrial OS=Homo sapiens
GN=MTERF PE=1 SV=1
Length = 399
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 206 LIVRCPKILN--YDLDTQLIPKVRV--LSELGGDDVDSTAAIVWKFPAILSYSLEHIGKH 261
L+ P+ + DL+ Q++ ++ LS D D I++K P IL S + + +
Sbjct: 196 LLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVKAN 255
Query: 262 VEFLRSFAGLSDQEIFRIFLVFPAV----ISASRERKLRPRI-DFLKQCGLGSEDIFKFL 316
+EFLRS L+ +E+ + + P +S R+ I + L G E++ KF+
Sbjct: 256 IEFLRSTFNLNSEELL-VLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFV 314
Query: 317 TKAP--LFLA 324
P +FLA
Sbjct: 315 LSYPDVIFLA 324
>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
Length = 35213
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 35/169 (20%)
Query: 67 VDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAE-----EIDRL 121
V SL E+ L VT ++ + ++ +L++ G+K A C ++ ++ N+L+AE E D++
Sbjct: 4112 VSSLTEE---LTVT-IEDIDPQMANLET-GLKD-ALCSIVCEERNILMAEDPRIHEEDKI 4165
Query: 122 -ICFVRDDLDGNIEPMKLERLLTS-TETKFLVGFDQ----KVRLLLQLG----VPQETIL 171
+ RD L + K+E ++ + ++K+LV ++ KV L+ G VPQ L
Sbjct: 4166 DVQGGRDHLS---DAQKVETVIEAEADSKYLVSKEEVSWSKVESQLKDGDTNEVPQAETL 4222
Query: 172 HVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDT 220
+ K S E+ E T A L CP +L + +DT
Sbjct: 4223 KLAEESGTQKTSTEMSQEEAEGTLADL-----------CPAVLKHLVDT 4260
>sp|P29072|CHEA_BACSU Chemotaxis protein CheA OS=Bacillus subtilis (strain 168) GN=cheA
PE=1 SV=2
Length = 672
Score = 32.0 bits (71), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 15/168 (8%)
Query: 285 AVISASRERKLRP--RIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGY 342
A + A +E++ +P + K GS+ I + + + L F+ + I G L +I
Sbjct: 266 AAVPAKQEKQKQPAKNDEQAKHSAGGSKTIRVNIDRLDSLMNL-FEELVIDRGRLEQIAK 324
Query: 343 ECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEK 402
E EL + +TR S +LQ +I + + + + P++++ K L +K
Sbjct: 325 ELEHNELTETVERMTRISG-DLQSII-----LNMRMVPVETVFNRFPRMIRQLQKELNKK 378
Query: 403 MEYLIVG----MGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDG 446
+E I+G + R V + + P L + + + I H EA L G
Sbjct: 379 IELSIIGAETELDRTVIDEIGDP--LVHLIRNSIDHGIEAPETRLQKG 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,789,607
Number of Sequences: 539616
Number of extensions: 6649245
Number of successful extensions: 16124
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 16113
Number of HSP's gapped (non-prelim): 20
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)