Query 012091
Match_columns 471
No_of_seqs 276 out of 1298
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 3.3E-47 1.1E-51 383.7 26.3 307 55-468 24-343 (343)
2 3m66_A Mterf3, mterf domain-co 100.0 2.5E-43 8.5E-48 344.2 19.6 222 211-470 30-261 (270)
3 3mva_O Transcription terminati 100.0 1.7E-36 5.9E-41 305.4 22.4 264 23-346 43-322 (343)
4 4fp9_B Mterf domain-containing 100.0 3.4E-35 1.2E-39 292.0 20.5 208 221-469 45-264 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 1.2E-30 4.2E-35 254.3 16.6 215 52-309 7-232 (270)
6 4fp9_B Mterf domain-containing 99.9 1.5E-22 5.2E-27 201.1 18.4 179 155-412 48-227 (335)
7 4fzv_B Mterf domain-containing 99.6 8.7E-15 3E-19 124.1 12.5 165 269-469 43-219 (239)
8 4fzv_B Mterf domain-containing 98.5 1.8E-06 6.3E-11 73.3 13.2 150 221-412 32-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 91.9 0.35 1.2E-05 33.8 5.4 27 362-388 28-54 (54)
10 2w84_A Peroxisomal membrane pr 87.1 0.94 3.2E-05 33.4 4.8 27 362-388 33-59 (70)
11 3ff5_A PEX14P, peroxisomal bio 85.0 0.93 3.2E-05 31.7 3.7 35 71-108 19-53 (54)
12 4ae4_A Ubiquitin-associated pr 79.3 11 0.00038 30.8 8.9 39 366-411 78-116 (118)
13 3ugm_A TAL effector avrbs3/PTH 77.9 30 0.001 36.9 13.4 44 373-418 591-634 (1047)
14 1ify_A HHR23A, UV excision rep 76.1 6.8 0.00023 26.6 5.7 39 363-408 7-45 (49)
15 1oqy_A HHR23A, UV excision rep 75.9 5.5 0.00019 39.4 7.2 38 365-409 326-363 (368)
16 3ugm_A TAL effector avrbs3/PTH 75.4 65 0.0022 34.4 15.1 142 232-387 389-537 (1047)
17 2w84_A Peroxisomal membrane pr 74.5 2.6 9E-05 31.0 3.3 36 71-109 24-59 (70)
18 1wgn_A UBAP1, ubiquitin associ 69.5 6.1 0.00021 28.2 4.1 39 365-410 20-58 (63)
19 1veg_A NEDD8 ultimate buster-1 66.0 9.3 0.00032 29.2 4.9 45 365-416 30-74 (83)
20 2g3q_A Protein YBL047C; endocy 60.8 13 0.00044 24.2 4.4 36 366-408 6-41 (43)
21 4ae4_A Ubiquitin-associated pr 59.8 57 0.0019 26.5 9.0 97 156-270 11-116 (118)
22 2ekk_A UBA domain from E3 ubiq 59.5 12 0.00042 24.9 4.1 36 365-408 10-45 (47)
23 2ooa_A E3 ubiquitin-protein li 59.1 7.7 0.00026 26.7 2.9 27 362-388 9-35 (52)
24 1vg5_A RSGI RUH-014, rhomboid 58.3 13 0.00045 27.6 4.4 38 364-408 29-66 (73)
25 2knz_A Ubiquilin-4; cytoplasm, 57.6 19 0.00064 24.8 4.9 39 363-408 10-49 (53)
26 1z96_A DNA-damage, UBA-domain 54.3 15 0.0005 23.3 3.7 24 365-388 5-28 (40)
27 1wiv_A UBP14, ubiquitin-specif 54.1 23 0.00079 26.2 5.2 38 365-409 30-67 (73)
28 1wji_A Tudor domain containing 53.6 23 0.00079 25.4 5.0 38 365-409 10-47 (63)
29 2dak_A Ubiquitin carboxyl-term 53.3 20 0.00068 25.6 4.6 39 365-410 10-48 (63)
30 2d9s_A CBL E3 ubiquitin protei 47.6 14 0.00049 25.5 2.8 26 363-388 8-33 (53)
31 2jy5_A Ubiquilin-1; UBA, alter 46.2 27 0.00091 23.9 4.2 38 363-407 11-49 (52)
32 2dai_A Ubadc1, ubiquitin assoc 46.0 37 0.0013 25.8 5.3 39 366-411 31-69 (83)
33 2cpw_A CBL-interacting protein 46.0 29 0.001 24.8 4.5 38 367-410 22-59 (64)
34 2cos_A Serine/threonine protei 45.0 32 0.0011 23.8 4.2 40 367-413 12-51 (54)
35 2oo9_A E3 ubiquitin-protein li 44.2 23 0.00078 23.6 3.3 26 363-388 3-28 (46)
36 2dag_A Ubiquitin carboxyl-term 43.5 35 0.0012 25.2 4.7 41 365-411 10-50 (74)
37 2juj_A E3 ubiquitin-protein li 42.9 25 0.00087 24.4 3.5 40 362-408 5-44 (56)
38 3e3v_A Regulatory protein RECX 41.2 69 0.0024 27.8 7.2 39 158-203 26-64 (177)
39 3idw_A Actin cytoskeleton-regu 37.6 46 0.0016 24.5 4.4 50 262-316 6-58 (72)
40 3dfg_A Xcrecx, regulatory prot 37.4 1.9E+02 0.0064 24.5 13.3 135 225-389 23-160 (162)
41 2bwb_A Ubiquitin-like protein 37.0 54 0.0018 21.7 4.4 23 364-386 7-30 (46)
42 2dkl_A Trinucleotide repeat co 36.7 56 0.0019 24.9 5.1 39 365-410 22-60 (85)
43 1wr1_B Ubiquitin-like protein 34.7 59 0.002 22.8 4.5 39 363-408 16-55 (58)
44 1uxc_A FRUR (1-57), fructose r 34.3 65 0.0022 22.9 4.9 51 57-107 7-57 (65)
45 2xzm_O RPS13E; ribosome, trans 34.1 87 0.003 26.5 6.2 69 246-318 23-96 (153)
46 4gfj_A Topoisomerase V; helix- 32.7 37 0.0013 33.9 4.2 96 55-175 468-567 (685)
47 1vej_A Riken cDNA 4931431F19; 32.7 63 0.0022 23.9 4.6 40 362-408 27-67 (74)
48 3e3v_A Regulatory protein RECX 30.4 2.6E+02 0.0089 24.0 11.7 82 299-388 25-110 (177)
49 2crn_A Ubash3A protein; compac 29.8 73 0.0025 22.7 4.4 38 367-410 12-49 (64)
50 3u5c_N S27A, YS15, 40S ribosom 29.8 1.1E+02 0.0037 25.9 6.0 69 246-318 21-94 (151)
51 1dv0_A DNA repair protein HHR2 29.7 17 0.00059 24.3 1.0 36 366-408 6-41 (47)
52 1whc_A RSGI RUH-027, UBA/UBX 3 28.3 68 0.0023 22.8 4.1 38 367-410 12-49 (64)
53 2e8o_A SAM domain and HD domai 28.2 63 0.0022 25.3 4.3 46 47-99 29-78 (103)
54 2dna_A Unnamed protein product 28.0 84 0.0029 22.8 4.4 38 364-408 19-57 (67)
55 1vek_A UBP14, ubiquitin-specif 27.5 1E+02 0.0036 23.2 5.2 40 365-410 30-69 (84)
56 3c1d_A Protein ORAA, regulator 27.0 2.8E+02 0.0095 23.2 10.2 137 226-388 12-157 (159)
57 1vej_A Riken cDNA 4931431F19; 25.2 1.2E+02 0.004 22.4 4.9 42 219-267 26-67 (74)
58 2dah_A Ubiquilin-3; UBA domain 25.1 1.5E+02 0.0051 20.3 5.2 43 219-268 6-48 (54)
59 1wj7_A Hypothetical protein (R 24.0 1.1E+02 0.0038 24.2 4.8 41 361-408 36-77 (104)
60 1uxc_A FRUR (1-57), fructose r 23.4 1.3E+02 0.0044 21.3 4.8 42 304-345 9-50 (65)
61 3v6t_A DHAX3; tandem repeats, 21.9 2.8E+02 0.0094 27.5 8.1 114 55-175 93-213 (499)
62 2f3n_A SH3 and multiple ankyri 21.9 86 0.0029 22.9 3.7 48 47-100 4-52 (76)
63 1go3_F DNA-directed RNA polyme 20.2 2.4E+02 0.0081 22.2 6.2 35 356-390 44-78 (107)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=3.3e-47 Score=383.69 Aligned_cols=307 Identities=19% Similarity=0.287 Sum_probs=267.4
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhccccccchh--hHHHHHHHHHhhccCC
Q 012091 55 TLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKDSNVLLAE--EIDRLICFVRDDLDGN 132 (471)
Q Consensus 55 ~fL~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~--~l~~~l~~l~~~l~gs 132 (471)
+||.++|++.++ +++.+|.++..++++..++++||+++|++.++|++++.++|.+|.++ ++.
T Consensus 24 ~~L~s~Gl~~~~---~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~------------- 87 (343)
T 3mva_O 24 KNLLTMGVDIDM---ARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLS------------- 87 (343)
T ss_dssp HHHHHHTCCHHH---HHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHH-------------
T ss_pred HHHHHcCCCHHH---HHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHH-------------
Confidence 999999999754 56789999999998899999999999999999999999999999764 222
Q ss_pred CChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCchhhhhccc
Q 012091 133 IEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPK 212 (471)
Q Consensus 133 ~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~~~i~~~p~ 212 (471)
|+++||+++|++.+++++++.+ +|+++.. +
T Consensus 88 ----------------------p~l~fL~~lG~s~~~i~~il~~--~P~iLl~-s------------------------- 117 (343)
T 3mva_O 88 ----------------------KRWDLWRKIVTSDLEIVNILER--SPESFFR-S------------------------- 117 (343)
T ss_dssp ----------------------HHHHHHTTTSSCHHHHHHHHHH--CSHHHHS-C-------------------------
T ss_pred ----------------------HHHHHHHHcCCCHHHHHHHHHH--CCHHHhC-C-------------------------
Confidence 4667777899999999999887 5774331 1
Q ss_pred ccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHh---hCCC--HHHHHHHHHhCCccc
Q 012091 213 ILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSF---AGLS--DQEIFRIFLVFPAVI 287 (471)
Q Consensus 213 ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~---lGl~--~~~i~~ii~~~P~lL 287 (471)
..++++.|+++||+++|+ +++++++++.++|.++++++++.+++++||.+. +|.+ .+.|.+++.++|.++
T Consensus 118 ----~~~~~l~p~v~fL~~lGl-~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL 192 (343)
T 3mva_O 118 ----NNNLNLENNIKFLYSVGL-TRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFIL 192 (343)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-CHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGG
T ss_pred ----ChHhhHHHHHHHHHHhCC-CHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHh
Confidence 112479999999999986 789999999999999999999889999999874 2333 778999999999999
Q ss_pred ccCcccchhhhHHHHHh-cCCChHhHHhHhhcC-ccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHH
Q 012091 288 SASRERKLRPRIDFLKQ-CGLGSEDIFKFLTKA-PLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQ 365 (471)
Q Consensus 288 ~~sle~~l~pr~~~L~~-~Gl~~~~i~~ll~~~-P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~ 365 (471)
++| +++++++++||++ +|++++++..++.+. |.+++++.+.+++++.++.
T Consensus 193 ~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~--------------------------- 244 (343)
T 3mva_O 193 IQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIK--------------------------- 244 (343)
T ss_dssp GSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHH---------------------------
T ss_pred cCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHH---------------------------
Confidence 999 7889999999995 999999999998885 5889999887777666655
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcC
Q 012091 366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGD 445 (471)
Q Consensus 366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~ 445 (471)
++|.++||+++|+..|+.++|++|++|.++|++|++||.+ ||+++++|+++|.+|+||+| ||+|||++| ++.
T Consensus 245 ---e~~~~lG~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L---~~~ 316 (343)
T 3mva_O 245 ---EKLFSLGCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKEL---VNA 316 (343)
T ss_dssp ---HHHHTTTCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHH---HTT
T ss_pred ---HHHHHcCCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHH---HHC
Confidence 3556899999999999999999999999999999999999 99999999999999999999 999999875 456
Q ss_pred C--CCch--hhhcccHHHHHHHHhhCC
Q 012091 446 G--LSIN--KLLSVSVERFSTKIKKNP 468 (471)
Q Consensus 446 g--~~l~--~~l~~sd~~F~~~~~k~~ 468 (471)
| +++. ++|++||++|+++|+|.+
T Consensus 317 g~~~~~~~~~~l~~s~~~F~~~~~~~~ 343 (343)
T 3mva_O 317 GCNLSTLNITLLSWSKKRYEAKLKKLS 343 (343)
T ss_dssp TCCSSSSCGGGGGSCHHHHHHHHHHTC
T ss_pred CCCCCCCcchhhcCCHHHHHHHHhccC
Confidence 6 5666 999999999999999864
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.5e-43 Score=344.16 Aligned_cols=222 Identities=23% Similarity=0.351 Sum_probs=204.9
Q ss_pred ccccccCccccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccC
Q 012091 211 PKILNYDLDTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISAS 290 (471)
Q Consensus 211 p~ll~~~~e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~s 290 (471)
|.++.+++++++.|+++||.++|+ +++++++++.++|.+++++.++++++++||++ +|++.++|++++.++|++|++|
T Consensus 30 p~lL~~~~~~~l~~~l~fL~~lG~-~~~~i~~il~~~P~lL~~~~e~l~p~v~~L~~-~Gls~~~i~~~l~~~P~lL~~s 107 (270)
T 3m66_A 30 NLLLRLDFEKDIKQMLLFLKDVGI-EDNQLGAFLTKNHAIFSEDLENLKTRVAYLHS-KNFSKADVAQMVRKAPFLLNFS 107 (270)
T ss_dssp HHHHTCCHHHHTHHHHHHHHHHTC-CGGGHHHHHHHCTTGGGSCHHHHHHHHHHHHH-TTCCHHHHHHHHHHSTTGGGSC
T ss_pred hhhhccChhhhHHHHHHHHHHcCC-CHHHHHHHHHhCChhhhCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCCHHHcCC
Confidence 444888888899999999999996 68899999999999999999999999999997 5999999999999999999999
Q ss_pred cccchhhhHHHH-HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHH
Q 012091 291 RERKLRPRIDFL-KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIG 369 (471)
Q Consensus 291 le~~l~pr~~~L-~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~ 369 (471)
+++ ++|+++|| +++|++++++.+++.++|++++++.+++++ +++
T Consensus 108 ~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~----------------------------------~v~ 152 (270)
T 3m66_A 108 VER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKE----------------------------------NMK 152 (270)
T ss_dssp HHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHH----------------------------------HHH
T ss_pred HHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHH----------------------------------HHH
Confidence 985 99999999 579999999999999999999999776554 444
Q ss_pred HH-HHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcCC--
Q 012091 370 LF-LSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGDG-- 446 (471)
Q Consensus 370 ~L-~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~g-- 446 (471)
++ .++|++.+||.+|+.++|+++++|.+++++|++||.++||+++++|+++|.+|+||+| ||+|||.++++|+++|
T Consensus 153 ~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~ 231 (270)
T 3m66_A 153 VYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYD 231 (270)
T ss_dssp HHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred HHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCC
Confidence 43 4899999999999999999999999999999999999999999999999999999998 9999999999998877
Q ss_pred ------CCchhhhcccHHHHHHHHhhCCCC
Q 012091 447 ------LSINKLLSVSVERFSTKIKKNPIH 470 (471)
Q Consensus 447 ------~~l~~~l~~sd~~F~~~~~k~~~~ 470 (471)
+++.+++.+||++|+++|++.+++
T Consensus 232 ~~~~~~~~L~~~l~~sd~~F~~~~~~~~~e 261 (270)
T 3m66_A 232 PAKPNYISLDKLVSIPDEIFCEEIAKASVQ 261 (270)
T ss_dssp TTSSSCCCHHHHHHSCHHHHHHHTTCSCHH
T ss_pred CCCCCCCCHHHHhcCCHHHHHHHHhcCCHH
Confidence 467789999999999999998853
No 3
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.7e-36 Score=305.40 Aligned_cols=264 Identities=15% Similarity=0.284 Sum_probs=234.8
Q ss_pred cccccccccchHHHHHHHHHHHhccchhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhh
Q 012091 23 PHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAF 102 (471)
Q Consensus 23 ~h~~~~~~~~~d~v~~~l~~~~~~~~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i 102 (471)
-|++| |++||+| + +||+++|++++||++++.++|.+|+++++++.|+++||+++|++.+++
T Consensus 43 l~~~s--~~~~~~v---l--------------~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i 103 (343)
T 3mva_O 43 VFHRM--ITNEQDL---K--------------MFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEI 103 (343)
T ss_dssp GGGCS--CCCHHHH---H--------------HHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHH
T ss_pred hhccC--cccHHHH---H--------------HHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence 47888 8899998 8 999999999999999999999999999888999999999999999999
Q ss_pred hhhhhccccccchhhHHHHHHHHHhhccCCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccc
Q 012091 103 CRLISKDSNVLLAEEIDRLICFVRDDLDGNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKA 182 (471)
Q Consensus 103 ~~ll~~~P~iL~~~~l~~~l~~l~~~l~gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~ 182 (471)
++++.++|.+|.. +...+ ...||++||+++|++.++|++++.+ +|++
T Consensus 104 ~~il~~~P~iLl~----------------s~~~~---------------~l~p~v~fL~~lGl~~~~i~~ll~~--~P~i 150 (343)
T 3mva_O 104 VNILERSPESFFR----------------SNNNL---------------NLENNIKFLYSVGLTRKCLCRLLTN--APRT 150 (343)
T ss_dssp HHHHHHCSHHHHS----------------CCCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHH--CGGG
T ss_pred HHHHHHCCHHHhC----------------CChHh---------------hHHHHHHHHHHhCCCHHHHHHHHHh--CChh
Confidence 9999999995421 21000 1236899999999999999999998 7998
Q ss_pred cccCCcccHHHHHHHHhhcCCc-----------hhhhhcccccccCccccHHHHHHHHHh-CCCCChHHHHHHHHhcC-c
Q 012091 183 VCLKSVEDIERTFAYLNPFGGA-----------DLIVRCPKILNYDLDTQLIPKVRVLSE-LGGDDVDSTAAIVWKFP-A 249 (471)
Q Consensus 183 l~~~s~~~~~~~v~~L~~lG~~-----------~~i~~~p~ll~~~~e~~l~~kv~~L~~-~g~~~~~~l~~~v~k~P-~ 249 (471)
++ .++++.++.+++|+++|++ .++.++|.++..+ +++++++++||++ +|+ +++++..++.+.| .
T Consensus 151 l~-~~~e~~~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~-~~~~~~~~i~~~~~~ 227 (343)
T 3mva_O 151 FS-NSLDLNKQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNL-NSEELLVLICGPGAE 227 (343)
T ss_dssp GT-SCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCC-CHHHHHHHHHTTTGG
T ss_pred he-eCHHHhhHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCC-CHHHHHHHHhcCChH
Confidence 87 8899889999999987752 2788999999999 7799999999996 885 7888999998864 8
Q ss_pred ccccchhcHHHHHHHhHH---hhCCCHHHHHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccC
Q 012091 250 ILSYSLEHIGKHVEFLRS---FAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALS 326 (471)
Q Consensus 250 iL~~s~e~l~~~~~fL~~---~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s 326 (471)
+++++.+.+++++.|+.+ .+|++.++|..++.++|+++++|.++ ++++++||.+.|++.++| .++|.+|++|
T Consensus 228 ~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~~~-l~~k~~fl~~mg~~~~~i----~~~P~~l~~s 302 (343)
T 3mva_O 228 ILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAEKK-FNDKIDCLMEENISISQI----IENPRVLDSS 302 (343)
T ss_dssp GGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCHHH-HHHHHHHHHTTTCCHHHH----HHSGGGGGSC
T ss_pred HhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccHHH-HHHHHHHHHHcCCCHHHH----HhCCHHHhcC
Confidence 889999999999999886 57999999999999999999999986 999999999999998776 5799999999
Q ss_pred hhhHHHHHHHHHHcCCCccc
Q 012091 327 FDNIAIKLGFLVKIGYECRT 346 (471)
Q Consensus 327 ~~~l~~~l~~L~~~G~~~~~ 346 (471)
.|+++++.++|++.|++...
T Consensus 303 leri~~R~~~L~~~g~~~~~ 322 (343)
T 3mva_O 303 ISTLKSRIKELVNAGCNLST 322 (343)
T ss_dssp HHHHHHHHHHHHTTTCCSSS
T ss_pred HHHHHHHHHHHHHCCCCCCC
Confidence 99999999999999998764
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=292.00 Aligned_cols=208 Identities=16% Similarity=0.242 Sum_probs=188.4
Q ss_pred cHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHH
Q 012091 221 QLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRID 300 (471)
Q Consensus 221 ~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~ 300 (471)
++...+..|.++|+ ++++++.++.++|.++. +++.+++.||... |++.++|+++|.++|++|++|++ +++|+++
T Consensus 45 ~~e~~l~~L~d~Gf-s~~~i~~il~~~P~il~---~~l~~~i~~L~~L-Gls~e~V~kiL~k~P~lL~~s~e-~L~~~l~ 118 (335)
T 4fp9_B 45 ELERVMSSLLDMGF-SNAHINELLSVRRGASL---QQLLDIISEFILL-GLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS 118 (335)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHCSSCCH---HHHHHHHHHHHHT-TCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred cHHHHHHHHHHCCC-CHHHHHHHHHhCcccch---hHHHHHHHHHHHc-CCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence 47778889999996 78999999999999874 4577889999885 99999999999999999999996 5999999
Q ss_pred HHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHH
Q 012091 301 FLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFAD 380 (471)
Q Consensus 301 ~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~e 380 (471)
||+++|++.+++++++.++|++|+++.+++..++.+|. .++|||.+|
T Consensus 119 fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~---------------------------------~~lGfS~~e 165 (335)
T 4fp9_B 119 YLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLK---------------------------------EKCLFTVQQ 165 (335)
T ss_dssp HHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHH---------------------------------HTSCCCHHH
T ss_pred HHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHH---------------------------------HHcCCCHHH
Confidence 99999999999999999999999999877655444443 379999999
Q ss_pred HHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeecccccchhhHHHHHHHHhcC------------CCC
Q 012091 381 IYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKLDDRIKHRYEAKRKTLGD------------GLS 448 (471)
Q Consensus 381 v~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sle~rI~pR~~~L~~L~~~------------g~~ 448 (471)
|..||.++|+||++|.++|++|++||+++||+++++|++ |.+|+||++ ||+|||.||+.|... +++
T Consensus 166 v~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~nps 243 (335)
T 4fp9_B 166 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL 243 (335)
T ss_dssp HHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCC
T ss_pred HHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCcc
Confidence 999999999999999999999999999999999999997 999999998 999999999988542 247
Q ss_pred chhhhcccHHHHHHHHhhCCC
Q 012091 449 INKLLSVSVERFSTKIKKNPI 469 (471)
Q Consensus 449 l~~~l~~sd~~F~~~~~k~~~ 469 (471)
|.++++.||++|+.+++|.|+
T Consensus 244 L~~il~~sd~~F~~~vA~~s~ 264 (335)
T 4fp9_B 244 LKDILRVSEAEFLARTACTSV 264 (335)
T ss_dssp HHHHTTSCHHHHHHHTSCCCH
T ss_pred HHHHHcCCHHHHHHHHHhcCH
Confidence 899999999999999999985
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.97 E-value=1.2e-30 Score=254.32 Aligned_cols=215 Identities=18% Similarity=0.340 Sum_probs=186.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccchhhHHHHHHHHHhhcc
Q 012091 52 VSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLAEEIDRLICFVRDDLD 130 (471)
Q Consensus 52 ~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~~~l~~~l~~l~~~l~ 130 (471)
.++++|.++|++.++|++....+|.++++++++ +.|+++||+++|+++++|++++.++|.+|.++
T Consensus 7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~-------------- 72 (270)
T 3m66_A 7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSED-------------- 72 (270)
T ss_dssp HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSC--------------
T ss_pred HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC--------------
Confidence 356999999999999977666666669999975 99999999999999999999999999999864
Q ss_pred CCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHH-hhcCCc-----
Q 012091 131 GNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYL-NPFGGA----- 204 (471)
Q Consensus 131 gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L-~~lG~~----- 204 (471)
+ + + + .|+++||+++|++.+++++++.+ +|+++. .+++++++.+++| +++|++
T Consensus 73 --~--e---~-l-----------~p~v~~L~~~Gls~~~i~~~l~~--~P~lL~-~s~~~l~~~v~~L~~~lG~~~~~i~ 130 (270)
T 3m66_A 73 --L--E---N-L-----------KTRVAYLHSKNFSKADVAQMVRK--APFLLN-FSVERLDNRLGFFQKELELSVKKTR 130 (270)
T ss_dssp --H--H---H-H-----------HHHHHHHHHTTCCHHHHHHHHHH--STTGGG-SCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred --H--H---H-H-----------HHHHHHHHHcCCCHHHHHHHHHh--CCHHHc-CCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 0 1 1 1 25788899999999999999998 699887 8888999999999 579985
Q ss_pred hhhhhcccccccCccccHHHHHHHH-HhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhC
Q 012091 205 DLIVRCPKILNYDLDTQLIPKVRVL-SELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVF 283 (471)
Q Consensus 205 ~~i~~~p~ll~~~~e~~l~~kv~~L-~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~ 283 (471)
+++.++|.++..+.+ +++++++++ .++| ++++++..++.++|.++++|.++++++++||.+++|++.++|.+ +
T Consensus 131 ~ll~~~P~il~~s~e-~~~~~v~~l~~~~G-~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~----~ 204 (270)
T 3m66_A 131 DLVVRLPRLLTGSLE-PVKENMKVYRLELG-FKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVK----F 204 (270)
T ss_dssp HHHHHSGGGGTSCSH-HHHHHHHHHHHTSC-CCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHH----C
T ss_pred HHHHhCCcceeechH-HHHHHHHHHHHHcC-CCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHh----C
Confidence 378899999999876 699999975 6787 58899999999999999999999999999999999999998887 9
Q ss_pred CcccccCcccchhhhHHHHHh---cCCCh
Q 012091 284 PAVISASRERKLRPRIDFLKQ---CGLGS 309 (471)
Q Consensus 284 P~lL~~sle~~l~pr~~~L~~---~Gl~~ 309 (471)
|++|+||+| +++||..+++. .|+..
T Consensus 205 P~~l~~Sle-ri~pR~~~l~~L~~~g~~~ 232 (270)
T 3m66_A 205 PQVFNTRLF-KVKERHLFLTYLGRAQYDP 232 (270)
T ss_dssp GGGGGSCHH-HHHHHHHHHHHHTCCCCCT
T ss_pred chHhhCCHH-HHHHHHHHHHHhhccCCCC
Confidence 999999998 89999887776 45543
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=201.10 Aligned_cols=179 Identities=21% Similarity=0.402 Sum_probs=151.5
Q ss_pred hHHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCCchhhhhcccccccCccccHHHHHHHHHhCCC
Q 012091 155 QKVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGGADLIVRCPKILNYDLDTQLIPKVRVLSELGG 234 (471)
Q Consensus 155 ~~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~~~~i~~~p~ll~~~~e~~l~~kv~~L~~~g~ 234 (471)
.+++.|.++|+++.+|++++.. +|.++ ..++.+++.+|..+|+
T Consensus 48 ~~l~~L~d~Gfs~~~i~~il~~--~P~il-----------------------------------~~~l~~~i~~L~~LGl 90 (335)
T 4fp9_B 48 RVMSSLLDMGFSNAHINELLSV--RRGAS-----------------------------------LQQLLDIISEFILLGL 90 (335)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH--CSSCC-----------------------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHh--Ccccc-----------------------------------hhHHHHHHHHHHHcCC
Confidence 4666677777777777777765 45433 2357888999999986
Q ss_pred CChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHHHHH-hcCCChHhHH
Q 012091 235 DDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLK-QCGLGSEDIF 313 (471)
Q Consensus 235 ~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~-~~Gl~~~~i~ 313 (471)
+.++|.+|+.++|.+|++|.++|+++++||++ +|++..+|.+++.++|++|+++.+ ++..++.+|+ ++|++.+++.
T Consensus 91 -s~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~-lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~ 167 (335)
T 4fp9_B 91 -NPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK-LGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVT 167 (335)
T ss_dssp -CHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH-TTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHH
T ss_pred -CHHHHHHHHHhChhhccCCHHHHHHHHHHHHH-cCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHH
Confidence 78999999999999999999999999999988 699999999999999999999997 4888888886 6999999999
Q ss_pred hHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccc
Q 012091 314 KFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQ 393 (471)
Q Consensus 314 ~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~ 393 (471)
+|+.++|++|.++.++++++++|+.+ ++|++.++|. + |++|+
T Consensus 168 ~mv~r~P~lL~~S~e~L~~K~efLv~---------------------------------~Mgl~~~eIv----k-P~~l~ 209 (335)
T 4fp9_B 168 KILHSCPSVLREDLGQLEYKFQYAYF---------------------------------RMGIKHPDIV----K-SEYLQ 209 (335)
T ss_dssp HHHHHCGGGGTSCHHHHHHHHHHHHT---------------------------------TTCCCHHHHH----H-TTGGG
T ss_pred HHHHhCChhhhCCHHHHHHHHHHHHH---------------------------------HhCCCHHHcc----c-cchhh
Confidence 99999999999997776666555542 6888888854 3 99999
Q ss_pred cChhhHHHHHHHHHhhcCC
Q 012091 394 YNHKSLEEKMEYLIVGMGR 412 (471)
Q Consensus 394 ~s~~~l~~k~~fL~~~mg~ 412 (471)
||.+.|+++..||.. +|.
T Consensus 210 ySLeRIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 210 YSLTKIKQRHIYLER-LGR 227 (335)
T ss_dssp SCHHHHHHHHHHHHH-HTS
T ss_pred ccHHHHHHHHHHHHH-cCC
Confidence 999999999999987 776
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=124.13 Aligned_cols=165 Identities=19% Similarity=0.337 Sum_probs=146.0
Q ss_pred hCCCHHHHHHHHHhCCcccccCcccchhhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchh
Q 012091 269 AGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRE 348 (471)
Q Consensus 269 lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~ 348 (471)
+|++++-++-++.+.|+++...+- .++.|-.+|+.+|+.+..+.+++-.+|.|+++....+...+..+++
T Consensus 43 lglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrllke--------- 112 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKE--------- 112 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHH---------
T ss_pred hcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHH---------
Confidence 599999999999999999999985 4888999999999999999999999999999997666555544442
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHhhcCceeeccc
Q 012091 349 LAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELLAFPAFLGYKL 428 (471)
Q Consensus 349 ~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~~L~~Sl 428 (471)
.+-|+..++.+++..||.++.-+...++.|+.|-.-.||+.+.+|++ ..||.||+
T Consensus 113 ------------------------kclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-seylqysl 167 (239)
T 4fzv_B 113 ------------------------KCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSL 167 (239)
T ss_dssp ------------------------HSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-TTGGGSCH
T ss_pred ------------------------hHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-HHHHHHHH
Confidence 67899999999999999999999999999999999999999999998 47999999
Q ss_pred ccchhhHHHHHHHHhc------CC------CCchhhhcccHHHHHHHHhhCCC
Q 012091 429 DDRIKHRYEAKRKTLG------DG------LSINKLLSVSVERFSTKIKKNPI 469 (471)
Q Consensus 429 e~rI~pR~~~L~~L~~------~g------~~l~~~l~~sd~~F~~~~~k~~~ 469 (471)
.+|+.||-+++.|.. +| +-+.+++..||.+|..+-++.|+
T Consensus 168 -tkikqrhiylerlgryqtpdkkgqtqipnpllkdilrvseaeflartactsv 219 (239)
T 4fzv_B 168 -TKIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSV 219 (239)
T ss_dssp -HHHHHHHHHHHHHTCCCCCCSSSCCSSCCCCHHHHHTSCHHHHHHHTSCSCH
T ss_pred -HHHHHHHhHHHHhcccCCCCccCCccCCChHHHHHHHHhHHHHHHHHhcccH
Confidence 599999999998854 23 24689999999999999988875
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.50 E-value=1.8e-06 Score=73.25 Aligned_cols=150 Identities=21% Similarity=0.447 Sum_probs=122.5
Q ss_pred cHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHH
Q 012091 221 QLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRID 300 (471)
Q Consensus 221 ~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~ 300 (471)
.+...+.-+.-+|. +++-+.-++.+.|.++....-.++.+..||++. |+.+..+.+++..+|.++++.-. .+...++
T Consensus 32 qlldiisefillgl-npepvcvvlkkspqllklpimqmrkrssylqkl-glgegklkrvlyccpeiftmrqq-dindtvr 108 (239)
T 4fzv_B 32 QLLDIISEFILLGL-NPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKL-GLGEGKLKRVLYCCPEIFTMRQQ-DINDTVR 108 (239)
T ss_dssp TTTHHHHHHHHHCC-CTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHH-TTCSSCCHHHHHHCGGGGTSCHH-HHHHHHH
T ss_pred HHHHHHHHHHhhcC-CCCceEEEecCCHHHhcChHHHHHHHHHHHHHh-CCCccchhhheecCcHHHHHHHh-hHhHHHH
Confidence 45556666666775 788899999999999999999999999999985 99999999999999999998764 4778899
Q ss_pred HHHh-cCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHH
Q 012091 301 FLKQ-CGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFA 379 (471)
Q Consensus 301 ~L~~-~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ 379 (471)
.|++ +=++.+++.+++..+|.++.-+...++.+++|.- .++|+...
T Consensus 109 llkekclftvqqvtkilhscpsvlredlgqleykfqyay---------------------------------frmgikhp 155 (239)
T 4fzv_B 109 LLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAY---------------------------------FRMGIKHP 155 (239)
T ss_dssp HHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHH---------------------------------HTSCCCHH
T ss_pred HHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHH---------------------------------HHccCCCc
Confidence 9987 7789999999999999999998888777666643 24566665
Q ss_pred HHHHHHHhCCcccccChhhHHHHHHHHHhhcCC
Q 012091 380 DIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGR 412 (471)
Q Consensus 380 ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~ 412 (471)
+|.+ ...+.||..+++.+.-||.. +|.
T Consensus 156 divk-----seylqysltkikqrhiyler-lgr 182 (239)
T 4fzv_B 156 DIVK-----SEYLQYSLTKIKQRHIYLER-LGR 182 (239)
T ss_dssp HHHH-----TTGGGSCHHHHHHHHHHHHH-HTC
T ss_pred chhH-----HHHHHHHHHHHHHHHhHHHH-hcc
Confidence 5332 34678888899999988876 664
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=91.86 E-value=0.35 Score=33.84 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 362 ENLQKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
..+.+|++||++=|++.+||...+.++
T Consensus 28 sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 28 SPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 458899999999999999999998764
No 10
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=87.11 E-value=0.94 Score=33.38 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 362 ENLQKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
..+.+|++||++=|++.+||...+.+.
T Consensus 33 sp~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 33 SPLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 458899999999999999999999885
No 11
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=84.98 E-value=0.93 Score=31.70 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhc
Q 012091 71 LEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISK 108 (471)
Q Consensus 71 v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~ 108 (471)
+..+|.+-.++ +..+++||++-|++..+|...+.+
T Consensus 19 FL~dp~V~~sp---~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP---LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC---HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46688887766 556999999999999999877653
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=79.29 E-value=11 Score=30.81 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcC
Q 012091 366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMG 411 (471)
Q Consensus 366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg 411 (471)
+.+.-|.++||+.+++++.++.+-. ++..-+++|....|
T Consensus 78 ~~v~~L~eMGF~~~~a~~AL~~~~n-------d~erAlewL~~~~~ 116 (118)
T 4ae4_A 78 QLMSKFKEMGFELKDIKEVLLLHNN-------DQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTT-------CHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHHhcc
Confidence 4677788999999999999987755 77788888876544
No 13
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=77.86 E-value=30 Score=36.88 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=22.7
Q ss_pred HcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHh
Q 012091 373 SYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELL 418 (471)
Q Consensus 373 ~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~ 418 (471)
..|+|.++|..|-...-. ..-.+.++.-..-|....|++.++|+
T Consensus 591 a~gLS~~qVVaIAsn~GG--kQALeaV~~llpvL~~~~~Ls~~qVV 634 (1047)
T 3ugm_A 591 AHGLTQVQVVAIASNIGG--KQALETVQRLLPVLCQAHGLTPAQVV 634 (1047)
T ss_dssp HHCCCSHHHHTTTTSTTS--HHHHHHHHHHHHHHHHHSCCCSHHHH
T ss_pred HhCCCHHHeeeeccCCch--HHHHHHHHHhhHHHHhhccCCHHHee
Confidence 588998887766421100 00013444444444445667766653
No 14
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=76.14 E-value=6.8 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 363 NLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 363 ~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
.-+++++.|.++||+++++...++.+-. ++..-++||.+
T Consensus 7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~e~L~~ 45 (49)
T 1ify_A 7 EYETMLTEIMSMGYERERVVAALRASYN-------NPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHTTTS-------CSHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 3467788889999999999999987543 56777888876
No 15
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=75.88 E-value=5.5 Score=39.43 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVG 409 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~ 409 (471)
++.|+-|.++||+++.+.+.+..|-. +...-.+||.+.
T Consensus 326 ~eaI~rL~~mGF~~~~a~~al~a~~~-------n~e~A~~~L~~~ 363 (368)
T 1oqy_A 326 KEAIERLKALGFPESLVIQAYFACEK-------NENLAANFLLSQ 363 (368)
T ss_dssp HHHHHHHHHHTCCSHHHHHHTSSSSS-------CSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHhhC
Confidence 35678888999999998887655432 455556777654
No 16
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=75.40 E-value=65 Score=34.43 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhhHHHHH-hcCCChH
Q 012091 232 LGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPRIDFLK-QCGLGSE 310 (471)
Q Consensus 232 ~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr~~~L~-~~Gl~~~ 310 (471)
.|+ +.+++..+-..-- ..-.+.+.+...-+...-|+++++|.+|-...-.- -.+| .+..-+-.|. ..|++.+
T Consensus 389 ~gl-s~~~vvaiA~~GG---~qALe~V~~L~p~l~~~~glt~~qvv~IAsn~GGk--QALe-~V~~llp~L~~~~glt~a 461 (1047)
T 3ugm_A 389 HGL-TPDQVVAIASNGG---KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK--QALE-TVQRLLPVLCQTHGLTPA 461 (1047)
T ss_dssp SCC-CHHHHHHHHHHTH---HHHHHHHHHHHHHHHTTSSCCHHHHHHHHSSTTTH--HHHH-HHHHHHHHHHTTSCCCHH
T ss_pred cCC-CHHHHHHHhcccc---hhHHHHHhhccchhhhhcCCCHHHhhhhhccCchH--HHHH-HHHHHhHHhhcccCCCHH
Confidence 454 5666666654200 01234445555556666688888887754332210 0111 1222233333 5788888
Q ss_pred hHHhHhhcCccccccChhhHHHHHHHHHH-cCCCccchhHHHHHHHHhhcC-hhhHHHHHHH---HH-HcCCCHHHHHHH
Q 012091 311 DIFKFLTKAPLFLALSFDNIAIKLGFLVK-IGYECRTRELAAAMGSVTRTS-CENLQKVIGL---FL-SYGLSFADIYIM 384 (471)
Q Consensus 311 ~i~~ll~~~P~iL~~s~~~l~~~l~~L~~-~G~~~~~~~~~~~~~~~~~~~-~~~l~~ki~~---L~-~lG~s~~ev~~~ 384 (471)
+|.+|-...-.--. .+.+..-...+.. .|+++.. ++ ..-.+.. ...++...+. +. .+||+.++|..|
T Consensus 462 qvVaIAsn~GGkQA--LeaV~~llpvl~~~~gls~~q--vv---aiA~n~GGkQALeaV~~l~p~l~~~~gls~~qVVaI 534 (1047)
T 3ugm_A 462 QVVAIASHDGGKQA--LETVQQLLPVLCQAHGLTPDQ--VV---AIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534 (1047)
T ss_dssp HHHHHSSSTTHHHH--HHHHHHHHHHHHHHSCCCSHH--HH---HHHSSTTHHHHHHHHHHHSGGGTTTTCCCSHHHHHH
T ss_pred HHHHHHhcCcHHHH--HHHHHHHHHHHHHhcCCCHHH--HH---HHHhccchHHHHHHHHHhhhhhccccCCCHHHhhhh
Confidence 77665433211000 1223333333333 5666542 00 0011111 1234433332 22 789999999888
Q ss_pred HHh
Q 012091 385 SKK 387 (471)
Q Consensus 385 v~~ 387 (471)
...
T Consensus 535 AsN 537 (1047)
T 3ugm_A 535 ASN 537 (1047)
T ss_dssp HSS
T ss_pred hcC
Confidence 754
No 17
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=74.52 E-value=2.6 Score=30.98 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhhcc
Q 012091 71 LEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLISKD 109 (471)
Q Consensus 71 v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~~~ 109 (471)
+..+|.+-.++ +..|++||++-|++..||...+.+.
T Consensus 24 FLqdp~V~~sp---~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQSP---LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGSC---HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhCC---HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 45688887766 5678999999999999998887654
No 18
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.47 E-value=6.1 Score=28.22 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
++.++.+.++||+++++.+.++.... ++++-.|||...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~~-------NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKGE-------NIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCS-------CHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 34577788999999999999998776 7889999998765
No 19
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=65.98 E-value=9.3 Score=29.18 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHH
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGE 416 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~ 416 (471)
+++|+-|.++||+++++...++.+-. +++.-++||....|-.+++
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~g-------dve~A~e~L~sh~~~ip~~ 74 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGG-------NVQLAAQTLAHHGGSLPPD 74 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTT-------CHHHHHHHHHHHTSSCCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCCCCCchh
Confidence 56778888999999999999886543 5888999999877733333
No 20
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=60.83 E-value=13 Score=24.21 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
++++-|.++||+++++.+.+..+- .+++.-++||.+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCN-------WDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------cCHHHHHHHHHc
Confidence 567777889999998888887652 146666777754
No 21
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=59.82 E-value=57 Score=26.47 Aligned_cols=97 Identities=18% Similarity=0.273 Sum_probs=56.4
Q ss_pred HHHHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhh------cCCchhhhhcccccc-cCccc--cHHHHH
Q 012091 156 KVRLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNP------FGGADLIVRCPKILN-YDLDT--QLIPKV 226 (471)
Q Consensus 156 ~v~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~------lG~~~~i~~~p~ll~-~~~e~--~l~~kv 226 (471)
-|.-|.+.|++...+.+.+..+ .+ +.+..++||-. -|+.+-....|.-.. .+... .-...+
T Consensus 11 ~v~~l~~MGFp~~~~~kAl~~~--------g~--~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~~~~~~v 80 (118)
T 4ae4_A 11 CVETVVNMGYSYECVLRAMKAA--------GA--NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMMEFLQLM 80 (118)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH--------CS--CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH--------Cc--CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccccCHHHH
Confidence 5677889999999999988652 12 57777777754 344321111111110 01000 112357
Q ss_pred HHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhC
Q 012091 227 RVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAG 270 (471)
Q Consensus 227 ~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lG 270 (471)
.-|.+.|| +++++.+++..+- .++.+.++||....|
T Consensus 81 ~~L~eMGF-~~~~a~~AL~~~~-------nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 81 SKFKEMGF-ELKDIKEVLLLHN-------NDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHTTC-CHHHHHHHHHHTT-------TCHHHHHHHHHHHC-
T ss_pred HHHHHcCC-CHHHHHHHHHHcC-------CCHHHHHHHHHHhcc
Confidence 88888886 6777777765443 356777788776655
No 22
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.46 E-value=12 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
+++++-|.++||+++++.+.++.+ . +++.-++||.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~-~-------n~e~A~~~L~~ 45 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT-S-------TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS-C-------SHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc-C-------CHHHHHHHHHc
Confidence 456777889999999999998886 2 47777888765
No 23
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=59.10 E-value=7.7 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 362 ENLQKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
+..+..|+-|.++||+++++.+.+...
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 455678888999999999999887643
No 24
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=58.26 E-value=13 Score=27.59 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 364 LQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 364 l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
.+++|+-|.++||+++++...++.+= .++..-++||.+
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHH
Confidence 46778888999999999999988753 267888899886
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.58 E-value=19 Score=24.78 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHcCC-CHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 363 NLQKVIGLFLSYGL-SFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 363 ~l~~ki~~L~~lG~-s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
..+++++-|.++|| +++.+...+..+-. +++.-++||.+
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-------nve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGG-------DINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTS-------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCC-------CHHHHHHHHHH
Confidence 45566666777777 66666666554332 46666666654
No 26
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=54.26 E-value=15 Score=23.31 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
+++++-|.++||+++++.+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 456777888999999988887765
No 27
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.14 E-value=23 Score=26.18 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVG 409 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~ 409 (471)
+++++.|.++||+++++.+.++.+-. +++.-++||.+.
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~~ 67 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHhC
Confidence 45677788899999999888887542 677888888764
No 28
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.60 E-value=23 Score=25.36 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVG 409 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~ 409 (471)
+++++.|.++||+++++.+.+..+=. +++.-++||.+.
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~~-------nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNGN-------NLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHHC
Confidence 35677788999999999888887632 578888998874
No 29
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.34 E-value=20 Score=25.59 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
+++++-|.++||+++++.+.++.+-. +++.-++||.+.+
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~ 48 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCC
Confidence 45677788999999999999998732 5888889998754
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=47.60 E-value=14 Score=25.47 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 363 NLQKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 363 ~l~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
..+.+|+-|.++||+++++.+.+...
T Consensus 8 ~~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 8 QLSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34567888899999999988887643
No 31
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=46.22 E-value=27 Score=23.90 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHcCC-CHHHHHHHHHhCCcccccChhhHHHHHHHHH
Q 012091 363 NLQKVIGLFLSYGL-SFADIYIMSKKHPQILQYNHKSLEEKMEYLI 407 (471)
Q Consensus 363 ~l~~ki~~L~~lG~-s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~ 407 (471)
..+.+++-|.++|| +++.+.+.+..+-. +++.-++||.
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~g-------n~e~A~e~L~ 49 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALIATGG-------DINAAIERLL 49 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHHHHTT-------CHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCC-------CHHHHHHHHH
Confidence 34566677777777 66665666554322 4555566554
No 32
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.02 E-value=37 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcC
Q 012091 366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMG 411 (471)
Q Consensus 366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg 411 (471)
+.++-|.++||+++++.+.++.+- .+++.-++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 456677889999999999988762 268888999988653
No 33
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=45.99 E-value=29 Score=24.84 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 367 VIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 367 ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
.++-|.++||+++++.+.++.+-. .+++.-++||.+.+
T Consensus 22 ~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 22 ALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHhCC
Confidence 466677899999999888886543 36888888888744
No 34
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.96 E-value=32 Score=23.81 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCC
Q 012091 367 VIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGRE 413 (471)
Q Consensus 367 ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~ 413 (471)
.++-|.++||+++-+...+++- ....|++.++||.+ |+++
T Consensus 12 mlq~L~eMGFd~erae~Alk~T------g~~Gle~AmewL~k-~~~~ 51 (54)
T 2cos_A 12 MLQELVNAGCDQEMAGRALKQT------GSRSIEAALEYISK-MSGP 51 (54)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH------TSCCHHHHHHHHHH-HSCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CcccHHHHHHHHHH-hcCC
Confidence 3455667777777666665542 22457888888876 7665
No 35
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=44.23 E-value=23 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhC
Q 012091 363 NLQKVIGLFLSYGLSFADIYIMSKKH 388 (471)
Q Consensus 363 ~l~~ki~~L~~lG~s~~ev~~~v~~~ 388 (471)
.++..|+.|.+.||+.+++.+.+...
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35677888899999999988876543
No 36
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.49 E-value=35 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcC
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMG 411 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg 411 (471)
++.++-|.++||+++++.+.++.+-. .+++.-++||.+.+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 34667778899999999999886542 258888999998653
No 37
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=42.91 E-value=25 Score=24.35 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 362 ENLQKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 362 ~~l~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
+..+..|+.|.++||+++++.+.+... ..++.---+.|.+
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ia-------~Ndv~~AtNiLlE 44 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVIA-------QNNIEMAKNILRE 44 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT-------TTCSHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHh-------cccHHHHHHHHHH
Confidence 345678888999999999998886543 3345554555544
No 38
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=41.20 E-value=69 Score=27.77 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=23.0
Q ss_pred HHHHhcCCCHHHHHHHHhhcccccccccCCcccHHHHHHHHhhcCC
Q 012091 158 RLLLQLGVPQETILHVLNNINLSKAVCLKSVEDIERTFAYLNPFGG 203 (471)
Q Consensus 158 ~~L~~lGl~~~~i~~l~~~~~~p~~l~~~s~~~~~~~v~~L~~lG~ 203 (471)
.+|..-.-|..++..-+.. + ..+++.++.+|++|++.|+
T Consensus 26 ~~Ls~r~~S~~EL~~KL~~----k---g~~~~~ie~vl~~L~~~g~ 64 (177)
T 3e3v_A 26 NYLSYQLRTRKEVEDKLRS----L---DIHEDYISEIINKLIDLDL 64 (177)
T ss_dssp HHHHSSCCCHHHHHTTSGG----G---TCCHHHHHHHHHHHHHTTS
T ss_pred HHhccccccHHHHHHHHHH----c---CCCHHHHHHHHHHHHHcCC
Confidence 3444444555665544432 1 2456677888888888776
No 39
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=37.65 E-value=46 Score=24.47 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHhHHhhCCCHHHHHHHHHhCCcccc-cCcccchhhh--HHHHHhcCCChHhHHhHh
Q 012091 262 VEFLRSFAGLSDQEIFRIFLVFPAVIS-ASRERKLRPR--IDFLKQCGLGSEDIFKFL 316 (471)
Q Consensus 262 ~~fL~~~lGl~~~~i~~ii~~~P~lL~-~sle~~l~pr--~~~L~~~Gl~~~~i~~ll 316 (471)
++|+.+. |++...-.+ +-..+. -.++..+.|- -+.|+++|+.+.||-+++
T Consensus 6 f~FFl~a-Gv~~~~c~r----YA~~F~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 6 FEFFLNC-GVDVSNCQR----YTINFDREQLTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHHHHT-TCCHHHHHH----HHHHHHHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHc-CCChHHHHH----HHHHHHHccCCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 5777775 887765544 333332 2233334443 467888999887776544
No 40
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=37.40 E-value=1.9e+02 Score=24.47 Aligned_cols=135 Identities=14% Similarity=0.048 Sum_probs=70.2
Q ss_pred HHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhh-h-HHHH
Q 012091 225 KVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRP-R-IDFL 302 (471)
Q Consensus 225 kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~p-r-~~~L 302 (471)
-+.+|..-.- +..++..-+.+. +++.+.+...+++|.+.-=++....+....+.= +. +..-| + ..-|
T Consensus 23 Al~~Ls~r~~-s~~EL~~KL~~k----g~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~--~~----~~~G~~~I~~eL 91 (162)
T 3dfg_A 23 ALGLLVHREH-SKKELNRKLQAR----GIEPEAAQAAVERLAGEGWQDDVRFAASVVRNR--AS----SGYGPLHIRAEL 91 (162)
T ss_dssp HHHHHHHSCC-CHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HT----TTCCHHHHHHHH
T ss_pred HHHHhhchhh-hHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HH----ccccHHHHHHHH
Confidence 3445554443 455565555443 345566777777777752344555544333210 00 01112 1 3457
Q ss_pred HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHH-cCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHH
Q 012091 303 KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK-IGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADI 381 (471)
Q Consensus 303 ~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~-~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev 381 (471)
+..|++.+.|...+.... .+..+...+.+.. .|-... .....-++.+.||..-||+.+.|
T Consensus 92 ~~KGI~~~~I~~al~~~~------~de~e~a~~l~~Kk~~~~~~-------------~~~~~k~K~~~~L~rrGF~~~~I 152 (162)
T 3dfg_A 92 GTHGLDSDAVSAAMATFE------GDWTENALDLIRRRFGEDGP-------------VDLAQRRKAADLLARRGFDGNSI 152 (162)
T ss_dssp HHTTCCHHHHHHHHTTCC------SCHHHHHHHHHHHHHCTTCC-------------CSHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHcCCCHHHHHHHHHhCc------HhHHHHHHHHHHHhcCCCCC-------------CCHHHHHHHHHHHHHCCCCHHHH
Confidence 889999988888777653 1222222222221 221000 01122344567888999999999
Q ss_pred HHHHHhCC
Q 012091 382 YIMSKKHP 389 (471)
Q Consensus 382 ~~~v~~~P 389 (471)
..++...|
T Consensus 153 ~~~l~~~~ 160 (162)
T 3dfg_A 153 RLATRFDL 160 (162)
T ss_dssp HHHTTC--
T ss_pred HHHHhcCc
Confidence 98876554
No 41
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=37.00 E-value=54 Score=21.73 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCC-HHHHHHHHH
Q 012091 364 LQKVIGLFLSYGLS-FADIYIMSK 386 (471)
Q Consensus 364 l~~ki~~L~~lG~s-~~ev~~~v~ 386 (471)
.+.+++-|.++||+ ++.+.+.+.
T Consensus 7 ~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 7 YEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHH
Confidence 44555666666664 333344444
No 42
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.74 E-value=56 Score=24.86 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
+++++-|.++||+++++.+.+..+= .+++.-++||.+.+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n-------~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNN-------MNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHHCc
Confidence 5678888899999999888885433 36888899998743
No 43
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=34.67 E-value=59 Score=22.79 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCCC-HHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 363 NLQKVIGLFLSYGLS-FADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 363 ~l~~ki~~L~~lG~s-~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
..+.+++-|.++||+ ++.+.+.++.+- -+++.-++||.+
T Consensus 16 ~~~~qi~~L~~MGF~d~~~~~~AL~~~~-------gnve~Ave~L~~ 55 (58)
T 1wr1_B 16 RYEHQLRQLNDMGFFDFDRNVAALRRSG-------GSVQGALDSLLN 55 (58)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHHT-------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 355566666777774 444445444322 245556666654
No 44
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=34.31 E-value=65 Score=22.92 Aligned_cols=51 Identities=4% Similarity=0.004 Sum_probs=31.0
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhh
Q 012091 57 FQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLIS 107 (471)
Q Consensus 57 L~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~ 107 (471)
=+..|+|.+-|..++...+.-...+.+......+..+.+|..+...++-+.
T Consensus 7 A~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~ 57 (65)
T 1uxc_A 7 ARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLR 57 (65)
T ss_dssp HHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-------
T ss_pred HHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 346899999999999877622223445444555667889999887776553
No 45
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=34.12 E-value=87 Score=26.49 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=45.1
Q ss_pred hcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchh--hhHHHHHhcCCCh---HhHHhHhhc
Q 012091 246 KFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLR--PRIDFLKQCGLGS---EDIFKFLTK 318 (471)
Q Consensus 246 k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~--pr~~~L~~~Gl~~---~~i~~ll~~ 318 (471)
..|.-+.++.|++...+-=|.+. |+++.+|+-++...-.+=. -+.+- .-.++|++.|+.. +|+..++.+
T Consensus 23 ~~P~W~~~~~eeVe~~I~klakk-G~tpSqIG~iLRD~~GIp~---Vk~vtG~kI~rILk~~glapeiPEDL~~LikK 96 (153)
T 2xzm_O 23 RSPKWLHMTPSTVVDLSVKLAKK-GLTPSQIGVILRDQHGIPQ---VRFLTGQKILRILKKNGCAPQLPEDLYFLIKK 96 (153)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHT-TCCHHHHHHHHHHSSCCSC---HHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHC-CCCHHHhhhHHhhcCCCCC---eeeeccchHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 46788888888888887777777 9999999988875422111 01111 1267888888753 455555544
No 46
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=32.72 E-value=37 Score=33.85 Aligned_cols=96 Identities=17% Similarity=0.248 Sum_probs=59.3
Q ss_pred HHHHH-cCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCchhhhhhhhccccccch--hhHHHHHHHHHhhcc
Q 012091 55 TLFQE-IGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGMAFCRLISKDSNVLLA--EEIDRLICFVRDDLD 130 (471)
Q Consensus 55 ~fL~~-lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~~i~~ll~~~P~iL~~--~~l~~~l~~l~~~l~ 130 (471)
+.|.+ -|+.+..-..++.++..+ +. .....+.|+.-|+...+++++.... -|.. -++....+.-+. .
T Consensus 468 amLtAIaGIGp~tAeRLLEkFGSV-----e~Vm~AteDELRedGIGekqarrI~gl~--~l~~~~~d~~~a~elkr~--y 538 (685)
T 4gfj_A 468 ASLISIRGIDRERAERLLKKYGGY-----SKVREAGVEELREDGLTDAQIRELKGLK--TLESIVGDLEKADELKRK--Y 538 (685)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTSH-----HHHHHSCHHHHHHTTCCHHHHHHHHTCH--HHHHHSSSHHHHHHHHHH--S
T ss_pred eeeeccCCCCHHHHHHHHHHhcCH-----HHHHhCCHHHHHHccccHHHHHHHhhHH--HHHHHhcchhhHHHHHHh--h
Confidence 45665 677777777777776554 33 4455778888999999999877422 1111 123322222222 2
Q ss_pred CCCChhhHHHHhhhccccccccchhHHHHHHhcCCCHHHHHHHHh
Q 012091 131 GNIEPMKLERLLTSTETKFLVGFDQKVRLLLQLGVPQETILHVLN 175 (471)
Q Consensus 131 gs~~~~~l~~~l~~~~~~~~l~~~~~v~~L~~lGl~~~~i~~l~~ 175 (471)
||. ...+.. -|.-|+++|+++..|+.+-.
T Consensus 539 gs~------savr~~----------pv~elrelg~sd~~ia~ikg 567 (685)
T 4gfj_A 539 GSA------SAVRRL----------PVEELRELGFSDDEIAEIKG 567 (685)
T ss_dssp SCH------HHHHHS----------CHHHHHTTSCCHHHHHHHHT
T ss_pred ccH------HHHHhc----------cHHHHHHcCCchhhHHHhcC
Confidence 553 222222 46789999999999999754
No 47
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.67 E-value=63 Score=23.92 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHcCCC-HHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 362 ENLQKVIGLFLSYGLS-FADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 362 ~~l~~ki~~L~~lG~s-~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
+..+++++-|.++||+ ++.+.+.++..- -++..-++||..
T Consensus 27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~-------Gnve~Ave~L~~ 67 (74)
T 1vej_A 27 GRYQQELEELKALGFANRDANLQALVATD-------GDIHAAIEMLLG 67 (74)
T ss_dssp TTSHHHHHHHHHHTCCCHHHHHHHHHHTT-------SCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhC-------CCHHHHHHHHHh
Confidence 3456667777777774 555555555332 256677777765
No 48
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.44 E-value=2.6e+02 Score=23.98 Aligned_cols=82 Identities=9% Similarity=-0.020 Sum_probs=48.6
Q ss_pred HHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHH-h---hcChhhHHHHHHHHHHc
Q 012091 299 IDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSV-T---RTSCENLQKVIGLFLSY 374 (471)
Q Consensus 299 ~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~-~---~~~~~~l~~ki~~L~~l 374 (471)
+.+|....-+..++..-|.+. +++.+.+...+++|.+.|+-.. ..|+.+.... . .-++..+... |..-
T Consensus 25 l~~Ls~r~~S~~EL~~KL~~k----g~~~~~ie~vl~~L~~~g~ldD-~rfA~~~vr~~~~~~~~G~~~I~~e---L~~K 96 (177)
T 3e3v_A 25 LNYLSYQLRTRKEVEDKLRSL----DIHEDYISEIINKLIDLDLIND-KNYAESYVRTMMNTSDKGPKVIKLN---LSKK 96 (177)
T ss_dssp HHHHHSSCCCHHHHHTTSGGG----TCCHHHHHHHHHHHHHTTSSCH-HHHHHHHHHHHHHHCCCCHHHHHHH---HHTT
T ss_pred HHHhccccccHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHcccccHHHHHHH---HHHc
Confidence 444544555666666555443 5666778888888988888643 3444443221 1 1233333322 5678
Q ss_pred CCCHHHHHHHHHhC
Q 012091 375 GLSFADIYIMSKKH 388 (471)
Q Consensus 375 G~s~~ev~~~v~~~ 388 (471)
|++.+.|...+...
T Consensus 97 GI~~~~I~~al~~~ 110 (177)
T 3e3v_A 97 GIDDNIAEDALILY 110 (177)
T ss_dssp TCCHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHhC
Confidence 99999888888654
No 49
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.78 E-value=73 Score=22.75 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 367 VIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 367 ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
.++-|.++||+++.+.+.+..+-. .+++.-++||.+.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~n------~~~e~A~~wL~~h~ 49 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAATGR------KTAEEALAWLHDHC 49 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCC
Confidence 455677899999999888875432 36888999998865
No 50
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=29.77 E-value=1.1e+02 Score=25.90 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=44.3
Q ss_pred hcCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccch--hhhHHHHHhcCCCh---HhHHhHhhc
Q 012091 246 KFPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKL--RPRIDFLKQCGLGS---EDIFKFLTK 318 (471)
Q Consensus 246 k~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l--~pr~~~L~~~Gl~~---~~i~~ll~~ 318 (471)
..|.-+.++.|++...+-=|.+. |+++.+|+-++...-.+=.. +.+ +.-.++|++.|+.. +|+..++.+
T Consensus 21 ~~P~W~~~~~eeVe~~I~klakk-G~tpSqIG~iLRD~~GIp~V---k~vtG~kI~rILk~~glapeiPEDL~~LikK 94 (151)
T 3u5c_N 21 NAPAWFKLSSESVIEQIVKYARK-GLTPSQIGVLLRDAHGVTQA---RVITGNKIMRILKSNGLAPEIPEDLYYLIKK 94 (151)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHTT-TCCHHHHHHHHHHHTTCSCH---HHHSSSCHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHC-CCCHHHhhhHHhccCCCCCe---eeecccHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 46788888888888887777777 99999999877753111110 111 11267888888753 455555544
No 51
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=29.69 E-value=17 Score=24.34 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 366 KVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 366 ~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
+.|+-|.++||++..+.+.+..+- .+...-.+||.+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~~-------~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFACE-------KNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTTT-------SCHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 345556788999999888766554 245555666654
No 52
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.34 E-value=68 Score=22.84 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 367 VIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 367 ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
.++-|.++||+++++.+.++.+- ..+++.-++||.+.+
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCC
Confidence 45667789999999999888541 135888899998854
No 53
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.16 E-value=63 Score=25.30 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=29.3
Q ss_pred cchhHHHHHHHHHcCCChHHHHHHHHhC----CCCCCCCchhhHHHHHHHHhcCCCc
Q 012091 47 NWFAFVSVTLFQEIGLNEKEVDSLLEKN----PTLRVTPLDKMRSRILSLQSVGIKG 99 (471)
Q Consensus 47 ~~~~~~~~~fL~~lGls~~~i~~~v~~~----P~ll~~~~~~l~~~v~~L~~lGls~ 99 (471)
.|.+..|..||+++|++.......+..+ -.|+..+ -+-|+++|+..
T Consensus 29 ~Ws~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt-------~~dLkeLGI~~ 78 (103)
T 2e8o_A 29 TWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLD-------ESRFENLGVSS 78 (103)
T ss_dssp GCHHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCC-------HHHHHHTTCCC
T ss_pred hCCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCC-------HHHHHHcCCCC
Confidence 4666677799999999864566666554 2233323 34567788864
No 54
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.98 E-value=84 Score=22.77 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCHHHH-HHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 364 LQKVIGLFLSYGLSFADI-YIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 364 l~~ki~~L~~lG~s~~ev-~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
.+..++-|.++||+..+. .+.++.. .-++..-++||.+
T Consensus 19 y~~ql~qL~~MGF~d~~an~~AL~at-------~Gnve~Ave~L~~ 57 (67)
T 2dna_A 19 FSKEMECLQAMGFVNYNANLQALIAT-------DGDTNAAIYKLKS 57 (67)
T ss_dssp THHHHHHHHHHTCCCHHHHHHHHHHT-------TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHc-------CCCHHHHHHHHHh
Confidence 444555556666644432 3333322 2256666666655
No 55
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.48 E-value=1e+02 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
+..++-|.++||+++.+.+.+...-. .+++.-++||.+.+
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t~n------~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINTSN------AGVEEAMNWLLSHM 69 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTT------CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHcC------CCHHHHHHHHHhCC
Confidence 34566677899999998888775421 25888899998855
No 56
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.97 E-value=2.8e+02 Score=23.22 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHhCCCCChHHHHHHHHh------cCcccccchhcHHHHHHHhHHhhCCCHHHHHHHHHhCCcccccCcccchhhh-
Q 012091 226 VRVLSELGGDDVDSTAAIVWK------FPAILSYSLEHIGKHVEFLRSFAGLSDQEIFRIFLVFPAVISASRERKLRPR- 298 (471)
Q Consensus 226 v~~L~~~g~~~~~~l~~~v~k------~P~iL~~s~e~l~~~~~fL~~~lGl~~~~i~~ii~~~P~lL~~sle~~l~pr- 298 (471)
+.+|..-.- |..++..-+.+ .|....++.+.+...+++|.+.-=++.+..+. .....-..+..-|+
T Consensus 12 l~~Ls~r~~-S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~------~~v~~~~~~g~G~~~ 84 (159)
T 3c1d_A 12 VRILAVRDH-SEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVA------RFIASRSRKGYGPAR 84 (159)
T ss_dssp HHHHTTSCC-CHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSCCHHHHHH------HHHHHHHHTTCCHHH
T ss_pred HHHhhcccc-cHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHH------HHHHHHHhCCccHHH
Q ss_pred -HHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHH-cCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCC
Q 012091 299 -IDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVK-IGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGL 376 (471)
Q Consensus 299 -~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~-~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~ 376 (471)
..-|+..|++.+.|...+..... +..+...+.+.. +|-...+ ....-++.+.||..-||
T Consensus 85 I~~eL~~KGI~~~~i~~al~~~~~------d~~~~a~~l~~kk~~~~~~~-------------~~~~~~K~~~~L~rrGF 145 (159)
T 3c1d_A 85 IRQELNQKGISREATEKAMREADI------DWAALARDQATRKYGEPLPT-------------VFSEKVKIQRFLLYRGY 145 (159)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHCC------CHHHHHHHHHHHHHCSSCCC-------------SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCH------hHHHHHHHHHHHHcCCCCCC-------------CHHHHHHHHHHHHHCCC
Q ss_pred CHHHHHHHHHhC
Q 012091 377 SFADIYIMSKKH 388 (471)
Q Consensus 377 s~~ev~~~v~~~ 388 (471)
+.+.|..++...
T Consensus 146 ~~~~i~~~l~~~ 157 (159)
T 3c1d_A 146 LMEDIQDIWRNF 157 (159)
T ss_dssp CHHHHTTCC---
T ss_pred CHHHHHHHHHhc
No 57
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.23 E-value=1.2e+02 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=26.9
Q ss_pred cccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHH
Q 012091 219 DTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRS 267 (471)
Q Consensus 219 e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~ 267 (471)
+.....+|+-|.++||++++....++.. .-.++...++||.+
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~-------t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVA-------TDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHH-------TTSCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHH-------hCCCHHHHHHHHHh
Confidence 4556778888888887655555555442 23356677777765
No 58
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.06 E-value=1.5e+02 Score=20.28 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=25.7
Q ss_pred cccHHHHHHHHHhCCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHHh
Q 012091 219 DTQLIPKVRVLSELGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRSF 268 (471)
Q Consensus 219 e~~l~~kv~~L~~~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~~ 268 (471)
+.....+++-|.+.||.+++....++.+ +-.++...++||.+.
T Consensus 6 ~~~~~~~l~~L~~MGF~d~~~n~~AL~~-------~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 6 SGHFQVQLEQLRSMGFLNREANLQALIA-------TGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCSSHHHHHHHHHHTCCCHHHHHHHHHH-------HTSCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCcHHHHHHHHHH-------cCCCHHHHHHHHHhC
Confidence 4456778888888887544433444432 223566777777653
No 59
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.96 E-value=1.1e+02 Score=24.21 Aligned_cols=41 Identities=7% Similarity=0.162 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHc-CCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 361 CENLQKVIGLFLSY-GLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 361 ~~~l~~ki~~L~~l-G~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
...++++|+.+.++ ||++++++..+..+=. .+..-+++|.+
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ng-------Dl~~AI~~Lle 77 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDCNG-------DVNRAINVLLE 77 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 34578899999887 9999999999887644 56677888876
No 60
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.43 E-value=1.3e+02 Score=21.28 Aligned_cols=42 Identities=7% Similarity=0.053 Sum_probs=19.7
Q ss_pred hcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCcc
Q 012091 304 QCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345 (471)
Q Consensus 304 ~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~ 345 (471)
..|++..-+.+++...+.-...+.+..+.-.+.++++||.++
T Consensus 9 ~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp HHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC
T ss_pred HHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 355555555555554441122344444444444455565554
No 61
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=21.95 E-value=2.8e+02 Score=27.52 Aligned_cols=114 Identities=13% Similarity=0.248 Sum_probs=55.1
Q ss_pred HHHHH-cCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHh-cCCCchhhhhhhhccc--cccch-hhHHHHHHHHHhhc
Q 012091 55 TLFQE-IGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQS-VGIKGMAFCRLISKDS--NVLLA-EEIDRLICFVRDDL 129 (471)
Q Consensus 55 ~fL~~-lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~-lGls~~~i~~ll~~~P--~iL~~-~~l~~~l~~l~~~l 129 (471)
..|+. +|+++++|.++-.++=.= --.+.+......|.. .|+|++++..+.+... .-|.. ..+.|.+ ..-
T Consensus 93 p~L~~a~gLs~~qVVaIAsn~GGk--qALe~V~~~lpvL~~~~~Ls~~qVVaIAsn~GGkQALeaV~~llpvL---~~a- 166 (499)
T 3v6t_A 93 PVLCQAHGLTPQQVVAIASHDGGK--QALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL---CQA- 166 (499)
T ss_dssp HHHHHHSCCCHHHHHHHHSSTTHH--HHHHHHHHHHHHHHHTSCCCHHHHHHHHSSTTHHHHHHHHHHHHHHH---HHT-
T ss_pred HHHHHhcCCCHHHhhhhhhcCccH--HHHHHHHHhhHHhhhhcCCCHHHhHHHhhcCCcHHHHHHHHHhhHHH---HHh-
Confidence 44665 899999888865332000 001334445555554 7999998887765332 11111 1222222 111
Q ss_pred cCCCChhhHHHHhhhccc-cccccchhHHHHHHh-cCCCHHHHHHHHh
Q 012091 130 DGNIEPMKLERLLTSTET-KFLVGFDQKVRLLLQ-LGVPQETILHVLN 175 (471)
Q Consensus 130 ~gs~~~~~l~~~l~~~~~-~~~l~~~~~v~~L~~-lGl~~~~i~~l~~ 175 (471)
.| ++++++..+-...-. -.+-....-.-.|.+ +|++++++..+-.
T Consensus 167 ~g-ls~~qVvaIAsN~GGkQALeaV~~llpvl~~~~gls~~qVVaiAs 213 (499)
T 3v6t_A 167 HG-LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS 213 (499)
T ss_dssp SC-CCHHHHHHHHSSTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred cC-CCHHHHHHHhcccchHHHHHHHHHhhhhHHhhccCCHHHHHHHhh
Confidence 12 456666555432110 011111112223443 7888888887753
No 62
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=21.94 E-value=86 Score=22.89 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=27.2
Q ss_pred cchhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCch
Q 012091 47 NWFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGM 100 (471)
Q Consensus 47 ~~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~ 100 (471)
.|.+.+|..||+++|++ +....+..+ . .+-+. +.-.-+-|+++|++..
T Consensus 4 ~Ws~~~V~~WL~~lgl~--~Y~~~F~~~-~---idg~~Ll~Lt~~dL~~lGI~~~ 52 (76)
T 2f3n_A 4 LWSKFDVGDWLESIHLG--EHRDRFEDH-E---IEGAHLPALTKEDFVELGVTRV 52 (76)
T ss_dssp GCCHHHHHHHHHHTTCG--GGHHHHHHT-T---CCGGGGGGCCHHHHHHTTCCCH
T ss_pred hCCHHHHHHHHHHCCCH--HHHHHHHHc-C---CCHHHHccCCHHHHHHcCCCCh
Confidence 45667777999999987 455555543 1 11111 1112334567888754
No 63
>1go3_F DNA-directed RNA polymerase subunit F; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: a.60.8.2
Probab=20.18 E-value=2.4e+02 Score=22.22 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=27.6
Q ss_pred HhhcChhhHHHHHHHHHHcCCCHHHHHHHHHhCCc
Q 012091 356 VTRTSCENLQKVIGLFLSYGLSFADIYIMSKKHPQ 390 (471)
Q Consensus 356 ~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~~P~ 390 (471)
|...+.+..++-++.|.++|+.+.++.+++--||.
T Consensus 44 Fsk~~~e~a~~l~e~L~~~~l~e~~a~~I~nl~P~ 78 (107)
T 1go3_F 44 FAKLDKEEAKKLVEELISLGIDEKTAVKIADILPE 78 (107)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHCCC
T ss_pred HhCCCHHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 44455666677777788899999999999999996
Done!