Query 012091
Match_columns 471
No_of_seqs 276 out of 1298
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 21:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012091.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012091hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 74.6 1.3 9.5E-05 27.5 3.2 27 363-389 3-29 (41)
2 d1vg5a_ a.5.2.1 (A:) Rhomboid 69.6 2.9 0.00021 29.4 4.5 39 365-410 30-68 (73)
3 d2g3qa1 a.5.2.1 (A:1339-1381) 65.8 3.9 0.00028 25.2 3.9 34 368-408 8-41 (43)
4 d1wiva_ a.5.2.1 (A:) Ubiquitin 62.4 6.5 0.00047 27.4 5.2 38 365-409 30-67 (73)
5 d1wgna_ a.5.2.1 (A:) Ubiquitin 58.1 5.8 0.00042 26.9 4.1 38 365-409 20-57 (63)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 55.0 11 0.00079 25.3 5.2 39 365-410 10-48 (63)
7 d2pfxa1 a.152.1.3 (A:1-190) Un 38.0 37 0.0027 27.6 7.1 156 221-414 21-181 (190)
8 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 37.4 22 0.0016 22.7 4.2 35 368-408 16-50 (51)
9 d1vkea_ a.152.1.2 (A:) Hypothe 33.5 70 0.0051 23.8 7.5 67 321-387 13-83 (118)
10 d1whca_ a.5.2.1 (A:) UBA/UBX 3 32.4 24 0.0018 23.6 4.0 39 367-411 12-50 (64)
11 d2f3na1 a.60.1.2 (A:2-65) Sh3 32.0 24 0.0017 23.1 4.0 47 48-100 4-51 (64)
12 d1k6ya1 a.4.10.1 (A:1-46) N-te 31.3 20 0.0015 22.4 3.1 19 373-391 25-43 (46)
13 d2hsga1 a.35.1.5 (A:2-58) Gluc 29.1 51 0.0037 21.3 5.1 40 303-345 9-48 (57)
14 d2od5a1 a.4.5.70 (A:6-96) Hypo 28.7 22 0.0016 25.6 3.4 34 47-80 22-58 (91)
15 d1uxda_ a.35.1.5 (A:) Fructose 24.6 49 0.0036 21.5 4.4 43 303-345 8-50 (59)
16 d1cuka1 a.5.1.1 (A:156-203) DN 24.1 50 0.0037 20.6 4.1 26 364-389 5-30 (48)
17 d1kyza1 a.4.5.29 (A:13-119) Ca 24.1 19 0.0014 26.9 2.3 25 23-63 54-78 (107)
18 d1rw1a_ c.47.1.12 (A:) Hypothe 23.5 38 0.0028 25.0 4.2 40 374-418 71-110 (114)
19 d1efaa1 a.35.1.5 (A:2-60) Lac 21.9 76 0.0055 20.6 4.9 40 303-345 10-49 (59)
20 d2hsga1 a.35.1.5 (A:2-58) Gluc 21.4 73 0.0053 20.5 4.7 47 57-106 8-54 (57)
21 d1qpza1 a.35.1.5 (A:2-58) Puri 21.3 76 0.0055 20.4 4.8 40 303-345 8-47 (57)
22 d1qpza1 a.35.1.5 (A:2-58) Puri 20.5 78 0.0057 20.3 4.7 48 57-107 7-54 (57)
23 d2cg4a1 a.4.5.32 (A:4-66) Regu 20.4 71 0.0052 20.7 4.7 37 54-97 11-48 (63)
24 d2od5a1 a.4.5.70 (A:6-96) Hypo 20.3 78 0.0056 22.6 5.0 41 356-396 17-60 (91)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.61 E-value=1.3 Score=27.54 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhCC
Q 012091 363 NLQKVIGLFLSYGLSFADIYIMSKKHP 389 (471)
Q Consensus 363 ~l~~ki~~L~~lG~s~~ev~~~v~~~P 389 (471)
+.+++|+-|.++||+++++.+.++++-
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~~ 29 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRASY 29 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 467788888999999999999988764
No 2
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=69.62 E-value=2.9 Score=29.42 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
++.|+-|.++||+++++.+.+..+-. +++.-++||.+..
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~~~Ll~~~ 68 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAADD-------DLTVAVEILMSQS 68 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTS-------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC-------CHHHHHHHHHhCC
Confidence 55677788899999998888877543 6888888888753
No 3
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=65.82 E-value=3.9 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 368 IGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 368 i~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
|+-|.++||++++.++.+.++-. ++..-.+||.+
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~~w-------nleaAtN~LLd 41 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKCNW-------DLEAATNFLLD 41 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHcCC-------CHHHHHHHHHh
Confidence 45567899999999999998754 45566666654
No 4
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=62.36 E-value=6.5 Score=27.44 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVG 409 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~ 409 (471)
++.++-|.++||+++++++.++.+- .+++.-++||.+.
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~-------~n~e~Av~~Lls~ 67 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG-------GDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC-------CCHHHHHHHHHcC
Confidence 4567778899999999999998873 2688899998874
No 5
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.06 E-value=5.8 Score=26.86 Aligned_cols=38 Identities=18% Similarity=0.412 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhh
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVG 409 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~ 409 (471)
++.|+.|.++||+++++.+.+..+=. +++.-++||...
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~~~Lls~ 57 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKGE-------NIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhC
Confidence 45788888999999999998887532 688888998874
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.01 E-value=11 Score=25.34 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhc
Q 012091 365 QKVIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGM 410 (471)
Q Consensus 365 ~~ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~m 410 (471)
++.++-|.++||+++.+.+.+..+- .+++.-++||.+..
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 10 EKALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 3556777899999999999988773 26889999999854
No 7
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=37.97 E-value=37 Score=27.59 Aligned_cols=156 Identities=15% Similarity=0.028 Sum_probs=73.4
Q ss_pred cHHHHHHHHHh-CCCCChHHHHHHHHhcCcccccchhcHHHHHHHhHH----hhCCCHHHHHHHHHhCCcccccCcccch
Q 012091 221 QLIPKVRVLSE-LGGDDVDSTAAIVWKFPAILSYSLEHIGKHVEFLRS----FAGLSDQEIFRIFLVFPAVISASRERKL 295 (471)
Q Consensus 221 ~l~~kv~~L~~-~g~~~~~~l~~~v~k~P~iL~~s~e~l~~~~~fL~~----~lGl~~~~i~~ii~~~P~lL~~sle~~l 295 (471)
.+++..+-+++ +|+.. .+-+++..+|.++ +..+.+... .-++++...--+..+--++-+|.. .+
T Consensus 21 ~~~~~~~~~~~~~G~vp--N~~~~la~~P~~l-------~a~~~~~~~~~~~~~~L~~~~rEli~l~vS~~n~C~Y--C~ 89 (190)
T d2pfxa1 21 ETQKYFEICQEKLGMVP--NVLKAYAFNVEKL-------NAFTAMYNDLMLGESQLSKLEREMIAVVVSSINKCFY--CL 89 (190)
T ss_dssp HHHHHHHHHHHHHSSCC--HHHHHHTTSHHHH-------HHHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHHTCHH--HH
T ss_pred HHHHHHHHHHHHhCCCc--HHHHHHHcCHHHH-------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHhCCcH--HH
Confidence 45555555443 66542 2445444444443 444443322 213665544433333222222221 12
Q ss_pred hhhHHHHHhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcC
Q 012091 296 RPRIDFLKQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYG 375 (471)
Q Consensus 296 ~pr~~~L~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG 375 (471)
.-....++..|.+++++..+..... --..+ ++.+..++|...+ .......-+.-++-|+..|
T Consensus 90 ~~H~~~~~~~g~~~~~~~~i~~~~~-~~~~~-~~e~all~~a~~l----------------~~~~~~v~d~~~~~L~~~G 151 (190)
T d2pfxa1 90 VAHGAAVRQLSGDPQLGEMLVMNYR-VAPLD-ARQRVMLDFAAKM----------------TRASAEIEEADREVLRSHG 151 (190)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHCGG-GSCCC-HHHHHHHHHHHHH----------------HHHGGGCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCChhhhhhHHhhcc-cchhh-HHHHHHHHHHHHH----------------HhCcCCCCHHHHHHHHHCC
Confidence 2223456678888877766554322 11122 2333333333321 1110111133456678999
Q ss_pred CCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCCh
Q 012091 376 LSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREV 414 (471)
Q Consensus 376 ~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~ 414 (471)
||++||..++.-. + +-.-+..+.+.+|+++
T Consensus 152 ~sd~eI~el~~~i------a---~~~~~nr~~~~lgv~p 181 (190)
T d2pfxa1 152 FNDRDIWDIANVT------G---FFNMTNRVASATAMMP 181 (190)
T ss_dssp CCHHHHHHHHHHH------H---HHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHH------H---HHHHHHHHHHHcCCCC
Confidence 9999999986422 1 2233344556677765
No 8
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.39 E-value=22 Score=22.74 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHh
Q 012091 368 IGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIV 408 (471)
Q Consensus 368 i~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~ 408 (471)
++.|.++||+++.+.+.+... ....++.-++||.+
T Consensus 16 l~~L~~MGF~~~~a~~AL~~t------~n~~ve~A~~WLl~ 50 (51)
T d2cpwa1 16 LDVLLSMGFPRARAQKALAST------GGRSVQTACDWLFS 50 (51)
T ss_dssp HHHHHHHTCCHHHHHHHHHHT------TTSCHHHHHHHHHS
T ss_pred HHHHHHcCCCHHHHHHHHHHH------CCCCHHHHHHHHHc
Confidence 455678899988888887643 22357777777754
No 9
>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga maritima [TaxId: 2336]}
Probab=33.51 E-value=70 Score=23.78 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=36.8
Q ss_pred cccccChhhHHHHHHHHHHc----CCCccchhHHHHHHHHhhcChhhHHHHHHHHHHcCCCHHHHHHHHHh
Q 012091 321 LFLALSFDNIAIKLGFLVKI----GYECRTRELAAAMGSVTRTSCENLQKVIGLFLSYGLSFADIYIMSKK 387 (471)
Q Consensus 321 ~iL~~s~~~l~~~l~~L~~~----G~~~~~~~~~~~~~~~~~~~~~~l~~ki~~L~~lG~s~~ev~~~v~~ 387 (471)
+++..+++.++.-+++-... +++.+.+.++..-.........-+..-+.-..+.|.|++||...+.-
T Consensus 13 ~~~~~~p~~~k~F~~~~~~v~~~g~Ld~k~keLi~la~s~~~~c~~c~~~H~~~A~~~G~t~eEI~Eal~v 83 (118)
T d1vkea_ 13 KVLSRGTLNTKRFFNLDSAVYRPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASDEEIFEALDI 83 (118)
T ss_dssp HC-CCSCHHHHHHHHHHHHTTSCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHccCcHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 44555555566666665543 24444454443222222222334555556667899999998877653
No 10
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.40 E-value=24 Score=23.59 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=29.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcC
Q 012091 367 VIGLFLSYGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMG 411 (471)
Q Consensus 367 ki~~L~~lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg 411 (471)
.++-|.++||+++.+.+.+... ....++.-++||.+.+.
T Consensus 12 ~l~~L~~MGF~~~~a~~AL~~t------~n~~~e~A~~Wl~~h~~ 50 (64)
T d1whca_ 12 ALESLIEMGFPRGRAEKALALT------GNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH------TSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh------CCCCHHHHHHHHHHCCC
Confidence 4555678999999998887743 12358899999998764
No 11
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=32.00 E-value=24 Score=23.14 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHcCCChHHHHHHHHhCCCCCCCCchh-hHHHHHHHHhcCCCch
Q 012091 48 WFAFVSVTLFQEIGLNEKEVDSLLEKNPTLRVTPLDK-MRSRILSLQSVGIKGM 100 (471)
Q Consensus 48 ~~~~~~~~fL~~lGls~~~i~~~v~~~P~ll~~~~~~-l~~~v~~L~~lGls~~ 100 (471)
|.++.|.+||.++|++ +.+..+.++- + +-+. +.=.-+-|+++|++..
T Consensus 4 Ws~~~V~~wL~~~gl~--~y~~~F~~~~-i---~g~~L~~l~~~dL~~lGi~~~ 51 (64)
T d2f3na1 4 WSKFDVGDWLESIHLG--EHRDRFEDHE-I---EGAHLPALTKEDFVELGVTRV 51 (64)
T ss_dssp CCHHHHHHHHHHTTCG--GGHHHHHHTT-C---CGGGGGGCCHHHHHHTTCCCH
T ss_pred CCHHHHHHHHHHCCCH--HHHHHHHHCC-C---cHHHhhcCCHHHHHHcCCCCH
Confidence 5667777999999996 4667776652 2 1111 1112345678999764
No 12
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=31.28 E-value=20 Score=22.41 Aligned_cols=19 Identities=5% Similarity=-0.036 Sum_probs=17.7
Q ss_pred HcCCCHHHHHHHHHhCCcc
Q 012091 373 SYGLSFADIYIMSKKHPQI 391 (471)
Q Consensus 373 ~lG~s~~ev~~~v~~~P~i 391 (471)
.+|++..+.++||..||.+
T Consensus 25 ~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 25 DFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp HHTCCHHHHHHHHHHCTTC
T ss_pred HcCCCHHHHHHHHHHHHHh
Confidence 6899999999999999975
No 13
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=29.11 E-value=51 Score=21.30 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=26.5
Q ss_pred HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCcc
Q 012091 303 KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345 (471)
Q Consensus 303 ~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~ 345 (471)
+..|++..-+.++|...|. .+.++-+.-.+..+++||.++
T Consensus 9 ~~agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn 48 (57)
T d2hsga1 9 REASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPN 48 (57)
T ss_dssp HHTTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSC
T ss_pred HHHCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCC
Confidence 4577777777777776664 355555555666667777765
No 14
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=28.70 E-value=22 Score=25.60 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHH---cCCChHHHHHHHHhCCCCCCC
Q 012091 47 NWFAFVSVTLFQE---IGLNEKEVDSLLEKNPTLRVT 80 (471)
Q Consensus 47 ~~~~~~~~~fL~~---lGls~~~i~~~v~~~P~ll~~ 80 (471)
|..-...+++|.+ .|-+..||+.++++||++...
T Consensus 22 p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~ki 58 (91)
T d2od5a1 22 PRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKV 58 (91)
T ss_dssp CEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEE
T ss_pred CCcHHHHHHHHHHhcccCCCHHHHHHHHhcCcchhee
Confidence 3333444477764 777777777777777777543
No 15
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.59 E-value=49 Score=21.53 Aligned_cols=43 Identities=7% Similarity=0.073 Sum_probs=25.0
Q ss_pred HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCcc
Q 012091 303 KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345 (471)
Q Consensus 303 ~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~ 345 (471)
+..|++..-+.++|...|.-...++++-+.-.+...++||.++
T Consensus 8 ~~agvS~sTVSrvLn~~~~~~~vs~~tr~rV~~~a~~lgY~pn 50 (59)
T d1uxda_ 8 RLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (59)
T ss_dssp HHHTSCTTHHHHHHHTCGGGTTCTTTTHHHHHHHHHHHTCCCC
T ss_pred HHHCcCHHHHHHHHcCCCCcCcCCHHHHHHHHHHHHHHCCCcC
Confidence 3456666666666665555444455555555555666676654
No 16
>d1cuka1 a.5.1.1 (A:156-203) DNA helicase RuvA subunit, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.07 E-value=50 Score=20.57 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCC
Q 012091 364 LQKVIGLFLSYGLSFADIYIMSKKHP 389 (471)
Q Consensus 364 l~~ki~~L~~lG~s~~ev~~~v~~~P 389 (471)
.++-+.-|..+|++..|+.+++.+-+
T Consensus 5 ~~eAi~AL~~LGY~~~ea~~av~~i~ 30 (48)
T d1cuka1 5 EQEAVARLVALGYKPQEASRMVSKIA 30 (48)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 34556667789999999999998764
No 17
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}
Probab=24.06 E-value=19 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=19.6
Q ss_pred cccccccccchHHHHHHHHHHHhccchhHHHHHHHHHcCCC
Q 012091 23 PHWLNVFSTNADALDLLLIFLQRMNWFAFVSVTLFQEIGLN 63 (471)
Q Consensus 23 ~h~~~~~~~~~d~v~~~l~~~~~~~~~~~~~~~fL~~lGls 63 (471)
-.-++ |.+|+.+||+| .+|.+.|+=
T Consensus 54 l~~~~--p~~~~~L~Ril--------------R~Las~~vf 78 (107)
T d1kyza1 54 LPTTN--PDAPVMLDRML--------------RLLACYIIL 78 (107)
T ss_dssp SSCCC--TTHHHHHHHHH--------------HHHHHTTSE
T ss_pred cCCCC--CcchHHHHHHH--------------HHHHhcCce
Confidence 33456 77788899999 999998874
No 18
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.52 E-value=38 Score=25.02 Aligned_cols=40 Identities=13% Similarity=0.075 Sum_probs=27.1
Q ss_pred cCCCHHHHHHHHHhCCcccccChhhHHHHHHHHHhhcCCChHHHh
Q 012091 374 YGLSFADIYIMSKKHPQILQYNHKSLEEKMEYLIVGMGREVGELL 418 (471)
Q Consensus 374 lG~s~~ev~~~v~~~P~iL~~s~~~l~~k~~fL~~~mg~~~~~i~ 418 (471)
..++.+++.+++..+|.++.-..=.-..++ ..|++++++.
T Consensus 71 ~~ls~~e~i~~i~~~P~LikRPIv~~~~~~-----~iG~~~e~~~ 110 (114)
T d1rw1a_ 71 ADLDEAKAIELMLAQPSMIKRPVLELGGRT-----LVGFKPDAYA 110 (114)
T ss_dssp TTCCHHHHHHHHHHCGGGBCSCEEECSSCE-----EESCCHHHHH
T ss_pred ccccHHHHHHHHHhCcceEeCCEEEECCEE-----EECCCHHHHH
Confidence 468999999999999998876642112221 3577766553
No 19
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.94 E-value=76 Score=20.59 Aligned_cols=40 Identities=10% Similarity=0.137 Sum_probs=26.5
Q ss_pred HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCcc
Q 012091 303 KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345 (471)
Q Consensus 303 ~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~ 345 (471)
+..|++..-+.++|...|.+ ++++-+.-.+...++||.++
T Consensus 10 ~~agvS~sTVSr~l~~~~~v---s~~tr~rI~~~a~~lgY~pn 49 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASHV---SAKTREKVEAAMAELNYIPN 49 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSSC---CTHHHHHHHHHHHHHTCCCC
T ss_pred HHHCCCHHHHHHHHCCCCcC---CHHHHHHHHHHHHHHCCCcC
Confidence 45777777777777666643 55555555666667777765
No 20
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=21.42 E-value=73 Score=20.49 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhh
Q 012091 57 FQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLI 106 (471)
Q Consensus 57 L~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll 106 (471)
=+..|+|.+-+..++...|.+ +.++-+...+..+++|..+...++-+
T Consensus 8 A~~agvS~~TVSr~Ln~~~~V---s~~tr~rV~~aa~~lgY~pn~~A~~L 54 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPNV---KPSTRKKVLETIERLGYRPNAVARGL 54 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTTS---CHHHHHHHHHHHHHHTCCSCHHHHHH
T ss_pred HHHHCcCHHHHHHHhCCCCcC---CHHHHHHHHHHHHHHCcCCCHHHHHh
Confidence 346899999999999877753 44444444566678999887777654
No 21
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.32 E-value=76 Score=20.41 Aligned_cols=40 Identities=8% Similarity=0.179 Sum_probs=23.7
Q ss_pred HhcCCChHhHHhHhhcCccccccChhhHHHHHHHHHHcCCCcc
Q 012091 303 KQCGLGSEDIFKFLTKAPLFLALSFDNIAIKLGFLVKIGYECR 345 (471)
Q Consensus 303 ~~~Gl~~~~i~~ll~~~P~iL~~s~~~l~~~l~~L~~~G~~~~ 345 (471)
+..|++..-+.+++...|. .+.++-+.-.+...++||.++
T Consensus 8 ~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn 47 (57)
T d1qpza1 8 KRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPS 47 (57)
T ss_dssp HHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCC
T ss_pred HHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCC
Confidence 4466666666666666553 354554555555566677665
No 22
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.53 E-value=78 Score=20.35 Aligned_cols=48 Identities=8% Similarity=0.136 Sum_probs=34.4
Q ss_pred HHHcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCCCchhhhhhhh
Q 012091 57 FQEIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGIKGMAFCRLIS 107 (471)
Q Consensus 57 L~~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGls~~~i~~ll~ 107 (471)
=+..|+|.+-|..++...|.+ +.++-....+..+++|..+..+++-+.
T Consensus 7 A~~agVS~sTVSr~ln~~~~v---s~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRFV---AEETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCCCCcc---CHHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 346899999999999877753 334444444566779999888877554
No 23
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}
Probab=20.43 E-value=71 Score=20.66 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHH-HcCCChHHHHHHHHhCCCCCCCCchhhHHHHHHHHhcCC
Q 012091 54 VTLFQ-EIGLNEKEVDSLLEKNPTLRVTPLDKMRSRILSLQSVGI 97 (471)
Q Consensus 54 ~~fL~-~lGls~~~i~~~v~~~P~ll~~~~~~l~~~v~~L~~lGl 97 (471)
+..|+ +-..|..+||+.+ ..+...+..+++-|++-|+
T Consensus 11 L~~L~~~~r~s~~eiA~~l-------~ls~~~v~~Ri~rL~~~Gi 48 (63)
T d2cg4a1 11 LEALMGNARTAYAELAKQF-------GVSPETIHVRVEKMKQAGI 48 (63)
T ss_dssp HHHHHHCTTSCHHHHHHHH-------TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCCHHHHHHHH-------CcCHHHHHHHHHHHHHCCC
Confidence 35566 4677888888865 6666778889999988775
No 24
>d2od5a1 a.4.5.70 (A:6-96) Hypothetical protein GOS_3836187 {Environmental samples}
Probab=20.35 E-value=78 Score=22.56 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=31.5
Q ss_pred HhhcChhhHHHHHHHHH---HcCCCHHHHHHHHHhCCcccccCh
Q 012091 356 VTRTSCENLQKVIGLFL---SYGLSFADIYIMSKKHPQILQYNH 396 (471)
Q Consensus 356 ~~~~~~~~l~~ki~~L~---~lG~s~~ev~~~v~~~P~iL~~s~ 396 (471)
++...+.+-.+.++++. +.|-+..||..++.+.|++..+..
T Consensus 17 ~L~~~p~NT~eI~dhlN~r~r~gaTmnQlgNILakD~rf~kiG~ 60 (91)
T d2od5a1 17 FLGDRPRNTAEILEHINSTMRHGTTSQQLGNVLSKDKDIVKVGY 60 (91)
T ss_dssp HTSSSCEEHHHHHHHHHTSSSSCCCHHHHHHHHHHCTTEEEEEE
T ss_pred HHHcCCCcHHHHHHHHHHhcccCCCHHHHHHHHhcCcchheece
Confidence 33334455667788887 489999999999999999877653
Done!