BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012092
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKW0|RNG1A_ARATH Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana
GN=RING1A PE=1 SV=2
Length = 522
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 207/411 (50%), Positives = 282/411 (68%), Gaps = 16/411 (3%)
Query: 72 DRSRSSGDGEKDEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG 131
+RS SS G++ EF+ + L +IRK+VQCPICLGII+KTRTVMECLHRFCRECIDK+MRLG
Sbjct: 109 ERSPSSISGDQSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLG 168
Query: 132 NNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQIQASIA 191
NNECPACR HCASRRSLRDD +DALIAAL+ +ID YEEEELAF ++E ARNKQIQASIA
Sbjct: 169 NNECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIA 228
Query: 192 QTFQRQTEALGRKRTPKSTSALRRSHGRYRDTPLRGRRNYRMTELQGSDENDDANGDA-- 249
Q QRQ+EAL ++R+ +A+ R R R + M + S+ ++D + D
Sbjct: 229 QISQRQSEALVKRRSLGKEAAVLMRSPRIASGSRRRRNSRNMEQQNASEAHEDDDNDDNN 288
Query: 250 --GKDS-SSADERSTEVRPKRRKRWYGARFSQ--SSSAAAGTDGGGDENDSEVHRESMGA 304
G+D SS+DER TEVR K+R++ +R +Q SSS A +G +ND+EV+R++ G
Sbjct: 289 NRGRDKDSSSDERGTEVRQKKRRKRSTSRSTQHPSSSGANKNNGNCADNDTEVYRDTKGI 348
Query: 305 SVGLIGPSERLAWGKGGIRSHTRHG-SVSGSNGKNARNNRLSKLVDYLQ-SLEEKDDQLD 362
S GL+ E LAWG+GG RS+TRHG + SG + K+ RN R++KLV+YL+ S++ +LD
Sbjct: 349 SPGLVWNPEILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELD 408
Query: 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL----VKELH 418
+H+ LVSLD + IP L QPYLCCRPTL V+ L ++VA Q L+ E+E+ + V E
Sbjct: 409 IHVKLVSLDTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRRRVGEDA 468
Query: 419 SKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQNLG--HGFLLLAYQK 467
+ NLP+ + + KD++ L + ETL+ L+ + L++AY+K
Sbjct: 469 AIENLPAVTPASAA-ASKDEMLSLEDNETLSRLKIDFISSHEQHLIIAYRK 518
>sp|Q0WX00|RNG1B_ARATH Putative E3 ubiquitin-protein ligase RING1b OS=Arabidopsis thaliana
GN=RING1B PE=1 SV=1
Length = 460
Score = 311 bits (797), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 195/401 (48%), Positives = 259/401 (64%), Gaps = 23/401 (5%)
Query: 72 DRSRSSGDGE--KDEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129
+RS+SS GE + E+++V L+DI K+VQC ICLGIIRKTRTVMECLHRFCRECIDK+MR
Sbjct: 74 ERSQSSSAGELSESEYMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMR 133
Query: 130 LGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQIQAS 189
LGNNECP CR HCASRRSLRDD N+DALIAAL+ +IDK+EEEEL F+ ++ ARNKQIQAS
Sbjct: 134 LGNNECPTCRKHCASRRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQAS 193
Query: 190 IAQTFQRQTEAL-GRKRTPKSTSALRRSHGRYRDTPLRGRRNYRMTELQGSDENDDANGD 248
IAQ QRQ++AL RK K T+ L RS R RRN R E S+ NDD + +
Sbjct: 194 IAQVSQRQSKALVKRKSVGKGTAILSRSRRSG--GGSRRRRNCRNIEQDTSEANDDDDQN 251
Query: 249 A-GKDSSSADERSTEVRPKRRKRWYGARFSQSSSAAAGTDGGGDENDSEVHRESMGASVG 307
GKDSSS DE R KR A SS+A + G+ + R+S S
Sbjct: 252 KRGKDSSS-DEPCERQRKKR-----SATQPSSSNANNNDNCAGNGTEQTHQRDSRVISPV 305
Query: 308 LIGPSERLAWGKGGIRSHTRHGSVSGSNGKNARNNRLSKLVDYLQSLEEKDDQLDMHLVL 367
L+ SE +AWG+GG RS+TR G+ + + RN RL +LV+YL SLE +LD+HL L
Sbjct: 306 LVWNSELIAWGRGGTRSNTRQGN-NNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKL 364
Query: 368 VSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSS 427
VSLD + + L +PYLC RPTL V+ L +YVA L+A E+E+ + K+ + I +S+
Sbjct: 365 VSLDTEGLLNLHEPYLCFRPTLLVKQLREYVARHLKLKAEEVELLVSKDGDTVIGNKTST 424
Query: 428 NSLMIDPCKDKLQVLNEQETLTGLQTQNL-GHGFLLLAYQK 467
+K+Q L + ET+ L+ + +G++++ Y++
Sbjct: 425 ---------EKMQSLQDDETVAKLKVDCISSNGYMIVVYRR 456
>sp|Q99496|RING2_HUMAN E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1
Length = 336
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
++V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q5R9J5|RING2_PONAB E3 ubiquitin-protein ligase RING2 OS=Pongo abelii GN=RNF2 PE=2 SV=1
Length = 336
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
++V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q9CQJ4|RING2_MOUSE E3 ubiquitin-protein ligase RING2 OS=Mus musculus GN=Rnf2 PE=1 SV=1
Length = 336
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
++V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q4KLY4|RING2_RAT E3 ubiquitin-protein ligase RING2 OS=Rattus norvegicus GN=Rnf2 PE=2
SV=1
Length = 308
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
++V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 38 IVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q7ZWM8|RNG2B_XENLA E3 ubiquitin-protein ligase RING2-B OS=Xenopus laevis GN=rnf2-b
PE=2 SV=2
Length = 343
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 34 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 93
Query: 146 RSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAAR 182
RSLR D N+DALI+ +YP D+YE A QD A+
Sbjct: 94 RSLRPDPNFDALISKIYPSRDEYE----AHQDRVLAK 126
>sp|Q803I4|RING2_DANRE E3 ubiquitin-protein ligase RING2 OS=Danio rerio GN=rnf2 PE=2 SV=1
Length = 336
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 38 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 97
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP D+YE
Sbjct: 98 RSLRPDPNFDALISKIYPSRDEYE 121
>sp|Q66J69|RNG2A_XENLA E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis GN=rnf2-a
PE=2 SV=1
Length = 344
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 94
Query: 146 RSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAAR 182
RSLR D N+DALI+ +YP D+YE A QD A+
Sbjct: 95 RSLRPDPNFDALISKIYPSRDEYE----AHQDRVLAK 127
>sp|Q9VB08|RING1_DROME E3 ubiquitin-protein ligase RING1 OS=Drosophila melanogaster GN=Sce
PE=1 SV=1
Length = 435
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++KT T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 33 IAVSPRSLHSELMCPICLDMLKKTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 92
Query: 146 RSLRDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQIQASIA 191
RSLR D N+D LI+ +YP ++YE A Q++ A+ Q Q+ A
Sbjct: 93 RSLRADPNFDLLISKIYPSREEYE----AIQEKVMAKFNQTQSQQA 134
>sp|O35730|RING1_MOUSE E3 ubiquitin-protein ligase RING1 OS=Mus musculus GN=Ring1 PE=1
SV=2
Length = 406
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 94
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 95 RSLRPDPNFDALISKIYPSREEYE 118
>sp|Q6MGB6|RING1_RAT E3 ubiquitin-protein ligase RING1 OS=Rattus norvegicus GN=Ring1
PE=2 SV=2
Length = 406
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 94
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 95 RSLRPDPNFDALISKIYPSREEYE 118
>sp|Q06587|RING1_HUMAN E3 ubiquitin-protein ligase RING1 OS=Homo sapiens GN=RING1 PE=1
SV=2
Length = 406
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 94
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 95 RSLRPDPNFDALISKIYPSREEYE 118
>sp|Q5TJF3|RING1_CANFA E3 ubiquitin-protein ligase RING1 OS=Canis familiaris GN=RING1 PE=3
SV=2
Length = 406
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 35 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 94
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 95 RSLRPDPNFDALISKIYPSREEYE 118
>sp|A2T6X5|RING1_PANTR E3 ubiquitin-protein ligase RING1 OS=Pan troglodytes GN=RING1 PE=3
SV=1
Length = 377
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 65
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 66 RSLRPDPNFDALISKIYPSREEYE 89
>sp|A1YFY1|RING1_PANPA E3 ubiquitin-protein ligase RING1 OS=Pan paniscus GN=RING1 PE=3
SV=1
Length = 377
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 65
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 66 RSLRPDPNFDALISKIYPSREEYE 89
>sp|Q8WMN5|RING1_MACMU E3 ubiquitin-protein ligase RING1 OS=Macaca mulatta GN=RING1 PE=3
SV=1
Length = 377
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 65
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 66 RSLRPDPNFDALISKIYPSREEYE 89
>sp|A1YER5|RING1_GORGO E3 ubiquitin-protein ligase RING1 OS=Gorilla gorilla gorilla
GN=RING1 PE=3 SV=1
Length = 377
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145
+ V + E+ CPICL +++ T T ECLHRFC +CI A+R GN ECP CR S+
Sbjct: 6 IAVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCSDCIVTALRSGNKECPTCRKKLVSK 65
Query: 146 RSLRDDLNYDALIAALYPDIDKYE 169
RSLR D N+DALI+ +YP ++YE
Sbjct: 66 RSLRPDPNFDALISKIYPSREEYE 89
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1
SV=1
Length = 242
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+KL DI + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2
SV=1
Length = 241
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+KL DI + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+KL DI + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCSGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3
PE=2 SV=1
Length = 242
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+KL DI + C +C G + TV ECLH FCR C+ K + NN CP CR
Sbjct: 6 IKLWDINAHITCRLCNGYLIDATTVTECLHTFCRSCLVKYLE-ENNTCPTCR 56
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 5/91 (5%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
L+ ++K ++CPICL +I++ + +C H FC+ C+ K + R G ++CP C+ ++RS
Sbjct: 15 LNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQRKGPSQCPLCKND-ITKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE-EEELAFQD 177
L++ + L+ L I +E + L F D
Sbjct: 73 LQESTRFSQLVEELLKIIHAFELDTGLQFAD 103
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
L ++K ++CPICL +I++ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 LHAMQKILECPICLELIKEPVST-QCDHIFCKFCMLKLLNQKKGPSQCPLCKNE-ITKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L+ + L+ L ID +E
Sbjct: 73 LQGSARFSQLVEELLKIIDAFE 94
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
L+ ++K ++CPICL +I++ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 LNAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L++ + L+ L I +E
Sbjct: 73 LQESTRFSQLVEELLKIIHAFE 94
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR- 146
+K++++ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65
Query: 147 --SLRDDLNYDALIAALYPDIDKYE 169
S+R D ++ L P + K E
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR- 146
+K++++ + C +C G T++ECLH FC+ CI + + N CP C R
Sbjct: 7 IKITELNPHLMCALCGGYFIDATTIVECLHSFCKTCIVRYLET-NKYCPMCDVQVHKTRP 65
Query: 147 --SLRDDLNYDALIAALYPDIDKYE 169
S+R D ++ L P + K E
Sbjct: 66 LLSIRSDKTLQDIVYKLVPGLFKDE 90
>sp|Q9M9Y4|DRIP1_ARATH E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1
PE=1 SV=2
Length = 421
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 85 FVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNE-CPACRTHCA 143
+ VK +R + C IC I+R T+ ECLH FCR+CI + + E CP C
Sbjct: 2 MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61
Query: 144 SR--RSLRDDLNYDALIAALY 162
S LR D N L A ++
Sbjct: 62 STPLEKLRPDHNLQDLRAKIF 82
>sp|O55735|121R_IIV6 Putative RING finger protein 121R OS=Invertebrate iridescent virus
6 GN=IIV6-121R PE=4 SV=1
Length = 89
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+++ +++K V CPICL I K TV+EC H C C+ K N CP CR
Sbjct: 34 IEIENVKKNVLCPICL--IAKVNTVLECTHVLCSNCVKKI-----NVCPICR 78
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
++ ++K ++CPICL +I++ + +C H FCR C+ K + + G ++CP C+ ++RS
Sbjct: 15 INAMQKILECPICLELIKEPVST-KCDHIFCRFCMLKLLNQKKGPSQCPLCKNDI-TKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L++ + L+ L I ++
Sbjct: 73 LQESTRFSQLVEELLKIIHAFQ 94
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR---RSL 148
D + + C IC G + K V ECLH FC+ CI + +NECP C L
Sbjct: 11 DFNRYITCSICRGYLIKPTAVTECLHTFCKSCIVQHFE-ESNECPECGIQVHETNPLEML 69
Query: 149 RDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQIQAS 189
R D + +I L P + + EE Q+ E R +I+++
Sbjct: 70 RLDKTLEEIIFKLVPGLREKEEH----QESEFWRKHKIKSN 106
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana
GN=At3g23060 PE=2 SV=1
Length = 480
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECI-DKAMRLGNNECPACRTHCA--SRRSL 148
+++ + CPIC + T+ ECLH FCR CI +K + N CP C + L
Sbjct: 9 EVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKL 68
Query: 149 RDDLNYDALIAALY 162
R D + L +Y
Sbjct: 69 RSDCTWQDLKLKIY 82
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 79 DGEKDEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138
D E +E ++ LS++ + C IC G + T+ ECLH FC+ CI + +N CP C
Sbjct: 114 DSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKC 172
>sp|Q7YRV4|RO52_BOVIN E3 ubiquitin-protein ligase TRIM21 OS=Bos taurus GN=TRIM21 PE=2
SV=1
Length = 469
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141
V L+ + +EV C ICL + + ++ EC H FC+ECI + + G + CP CR H
Sbjct: 5 VPLTMMWEEVTCSICLDPMVEPMSI-ECGHSFCQECISEVGKEGGSVCPVCRRH 57
>sp|P19474|RO52_HUMAN E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1
SV=1
Length = 475
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACR 139
+L+ + +EV CPICL + ++ EC H FC+ECI + + G + CP CR
Sbjct: 6 RLTMMWEEVTCPICLDPFVEPVSI-ECGHSFCQECISQVGKGGGSVCPVCR 55
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKA--MRLGNNECPACRTHCASRRS 147
++ +++EV CPICL I++K T+ +C H FC +CI + G +CP C+T S
Sbjct: 7 VNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKT------S 59
Query: 148 LRDD-LNYDALIAALYPDIDKYEEEELAFQDEEAA 181
+R + + +++L+ L I + E+ + +EA
Sbjct: 60 VRKNAIRFNSLLRNLVEKIQALQASEVQSKRKEAT 94
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS 147
+K++++ + C +C G T++ECLH FC+ CI + + + CP C R
Sbjct: 7 IKITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLE-TSKYCPICDVQVHKTRP 65
Query: 148 L---RDDLNYDALIAALYPDIDKYE 169
L R D ++ L P + K E
Sbjct: 66 LLNIRSDKTLQDIVYKLVPGLFKNE 90
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1
SV=2
Length = 1601
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
Query: 88 VKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC-ASRR 146
V L+ + + C +C G + T++ECLH FC C+ +R CP C ++
Sbjct: 252 VLLTAVNPHIICHLCQGYLINATTIVECLHSFCHSCLINHLR-KERFCPRCEMVINNAKP 310
Query: 147 SLRDDLNYDALIAALYPDIDKYEEEEL---AF---QDEEAA 181
+++ D A++ L P + YE E + AF + EEAA
Sbjct: 311 NIKSDTTLQAIVYKLVPGL--YERELMRKRAFYKDRPEEAA 349
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
++ ++K ++CPICL +I++ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L++ + L+ L I ++
Sbjct: 73 LQESTRFSQLVEELLKIICAFQ 94
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5 PE=1
SV=1
Length = 256
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRS-- 147
+ D + C IC G + K TV ECLH FC+ CI + +N+CP C
Sbjct: 9 VKDFNPYITCYICKGYLIKPTTVTECLHTFCKTCIVQHFE-DSNDCPRCGNQVHETNPLE 67
Query: 148 -LRDDLNYDALIAALYPDIDKYEEEELAFQDEEAARNK 184
LR D + +I L P + E+EL + E +NK
Sbjct: 68 MLRLDNTLEEIIFKLVPGL---REQELERESEFWKKNK 102
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
++ ++K ++CPICL +I++ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI-TKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L++ + L+ L I ++
Sbjct: 73 LQESTRFSQLVEELLKIICAFQ 94
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM--RLGNNECPACRTHCASRRS 147
++ ++K ++CPICL +I++ + +C H FC+ C+ K + + G ++CP C+ ++RS
Sbjct: 15 INAMQKILECPICLELIKEPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKND-ITKRS 72
Query: 148 LRDDLNYDALIAALYPDIDKYE 169
L++ + L+ L I ++
Sbjct: 73 LQESTRFSQLVEELLKIICAFQ 94
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 83 DEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138
+E V +K+ D+ + + C +C G T+ ECLH FC+ CI K ++ + CP C
Sbjct: 29 EEEVKIKIKDLNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQ-TSKYCPMC 83
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 83 DEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138
+E V VK+ D+ + + C +C G T+ ECLH FC+ CI K ++ + CP C
Sbjct: 31 EEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHTFCKSCIVKYLQ-TSKYCPMC 85
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 83 DEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138
+E V VK+ ++ + + C +C G T+ ECLH FC+ CI K ++ + CP C
Sbjct: 29 EEVVKVKIKELNEHIVCYLCAGYFIDATTITECLHTFCKSCIVKYLQ-TSKYCPLC 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,898,100
Number of Sequences: 539616
Number of extensions: 7845018
Number of successful extensions: 32116
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 504
Number of HSP's that attempted gapping in prelim test: 31299
Number of HSP's gapped (non-prelim): 1199
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)