Query 012092
Match_columns 471
No_of_seqs 374 out of 1905
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0311 Predicted E3 ubiquitin 100.0 1.6E-37 3.4E-42 309.8 14.1 351 71-469 19-378 (381)
2 KOG2660 Locus-specific chromos 99.3 3.2E-12 7E-17 128.3 9.9 81 86-167 5-88 (331)
3 smart00504 Ubox Modified RING 99.1 9.4E-11 2E-15 91.2 4.9 62 96-160 1-62 (63)
4 PF15227 zf-C3HC4_4: zinc fing 99.1 6.7E-11 1.4E-15 85.9 3.2 39 99-138 1-42 (42)
5 TIGR00599 rad18 DNA repair pro 99.0 2E-10 4.3E-15 120.0 5.3 70 90-162 20-89 (397)
6 PF04564 U-box: U-box domain; 99.0 4.4E-10 9.4E-15 91.0 5.0 66 95-162 3-68 (73)
7 PLN03208 E3 ubiquitin-protein 98.9 7.2E-10 1.6E-14 105.0 4.8 49 95-144 17-80 (193)
8 PF14835 zf-RING_6: zf-RING of 98.9 3E-10 6.5E-15 89.0 1.7 63 92-158 3-65 (65)
9 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.3E-10 1.4E-14 79.2 3.0 39 99-138 1-39 (39)
10 KOG0287 Postreplication repair 98.9 4.7E-10 1E-14 112.7 2.4 69 90-161 17-85 (442)
11 KOG0823 Predicted E3 ubiquitin 98.8 1.9E-09 4.2E-14 103.9 2.5 49 95-144 46-96 (230)
12 KOG0320 Predicted E3 ubiquitin 98.8 2.9E-09 6.3E-14 98.9 2.5 49 95-144 130-179 (187)
13 PF13639 zf-RING_2: Ring finge 98.8 3E-09 6.5E-14 77.5 2.0 41 98-139 2-44 (44)
14 PF00097 zf-C3HC4: Zinc finger 98.8 5.5E-09 1.2E-13 74.7 3.2 40 99-138 1-41 (41)
15 KOG2177 Predicted E3 ubiquitin 98.8 3.3E-09 7.2E-14 102.7 2.7 85 91-180 8-104 (386)
16 KOG0317 Predicted E3 ubiquitin 98.7 5.1E-09 1.1E-13 103.8 3.0 50 94-145 237-286 (293)
17 cd00162 RING RING-finger (Real 98.7 1.2E-08 2.6E-13 72.6 3.4 44 98-141 1-44 (45)
18 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.2E-08 2.6E-13 76.4 3.4 46 96-143 2-48 (50)
19 PHA02929 N1R/p28-like protein; 98.7 1.3E-08 2.9E-13 99.9 3.9 50 94-144 172-228 (238)
20 COG5432 RAD18 RING-finger-cont 98.6 2.9E-08 6.3E-13 98.3 4.2 67 92-161 21-87 (391)
21 smart00184 RING Ring finger. E 98.4 2E-07 4.3E-12 63.9 3.2 39 99-138 1-39 (39)
22 KOG2164 Predicted E3 ubiquitin 98.4 2.1E-07 4.7E-12 98.6 4.2 48 96-144 186-237 (513)
23 PHA02926 zinc finger-like prot 98.4 2E-07 4.4E-12 89.7 3.6 51 93-143 167-230 (242)
24 PF13445 zf-RING_UBOX: RING-ty 98.4 1.6E-07 3.4E-12 68.7 2.1 36 99-136 1-43 (43)
25 PF14634 zf-RING_5: zinc-RING 98.4 3E-07 6.5E-12 67.2 3.1 42 98-140 1-44 (44)
26 COG5574 PEX10 RING-finger-cont 98.4 1.8E-07 3.8E-12 92.0 2.4 51 94-145 213-264 (271)
27 KOG0978 E3 ubiquitin ligase in 98.3 3.2E-07 6.9E-12 101.3 2.1 61 83-144 630-690 (698)
28 TIGR00570 cdk7 CDK-activating 98.2 8.2E-07 1.8E-11 90.0 4.0 49 96-144 3-55 (309)
29 COG5540 RING-finger-containing 98.2 6.5E-07 1.4E-11 89.4 2.7 50 95-144 322-373 (374)
30 PF12678 zf-rbx1: RING-H2 zinc 98.2 9.3E-07 2E-11 71.7 3.1 41 98-139 21-73 (73)
31 KOG0297 TNF receptor-associate 98.1 8.7E-07 1.9E-11 93.3 2.2 72 93-165 18-89 (391)
32 KOG4628 Predicted E3 ubiquitin 98.1 1.1E-06 2.3E-11 90.4 2.1 47 97-143 230-278 (348)
33 COG5222 Uncharacterized conser 97.9 1.2E-05 2.6E-10 80.3 4.0 46 96-141 274-319 (427)
34 PF11789 zf-Nse: Zinc-finger o 97.8 1.3E-05 2.9E-10 62.0 2.6 44 94-137 9-53 (57)
35 COG5152 Uncharacterized conser 97.8 1.3E-05 2.8E-10 76.0 2.3 61 95-159 195-255 (259)
36 KOG4159 Predicted E3 ubiquitin 97.7 2.3E-05 5E-10 82.5 3.2 50 93-144 81-130 (398)
37 KOG0824 Predicted E3 ubiquitin 97.7 1.9E-05 4.2E-10 79.1 2.3 47 97-144 8-54 (324)
38 COG5243 HRD1 HRD ubiquitin lig 97.6 2.6E-05 5.6E-10 80.0 2.7 48 94-143 285-345 (491)
39 PF12861 zf-Apc11: Anaphase-pr 97.6 5.4E-05 1.2E-09 63.1 3.4 48 96-143 21-82 (85)
40 KOG1002 Nucleotide excision re 97.6 2.5E-05 5.4E-10 83.1 1.4 96 4-143 487-586 (791)
41 KOG0802 E3 ubiquitin ligase [P 97.5 3.4E-05 7.4E-10 84.6 1.7 46 95-142 290-340 (543)
42 KOG1813 Predicted E3 ubiquitin 97.5 5E-05 1.1E-09 76.0 2.3 56 96-155 241-296 (313)
43 KOG2879 Predicted E3 ubiquitin 97.5 6.9E-05 1.5E-09 74.3 2.7 49 95-143 238-287 (298)
44 KOG4367 Predicted Zn-finger pr 97.4 8.4E-05 1.8E-09 77.6 3.3 34 94-128 2-35 (699)
45 KOG4172 Predicted E3 ubiquitin 97.3 6.9E-05 1.5E-09 57.1 0.8 46 97-143 8-54 (62)
46 KOG0804 Cytoplasmic Zn-finger 96.9 0.00031 6.7E-09 73.8 1.1 47 94-143 173-222 (493)
47 KOG0828 Predicted E3 ubiquitin 96.8 0.00049 1.1E-08 73.1 1.6 50 94-143 569-634 (636)
48 KOG4265 Predicted E3 ubiquitin 96.8 0.00065 1.4E-08 69.8 2.1 46 96-143 290-336 (349)
49 KOG1645 RING-finger-containing 96.6 0.0028 6.2E-08 66.1 5.7 61 96-157 4-69 (463)
50 KOG0825 PHD Zn-finger protein 96.5 0.0006 1.3E-08 75.7 -0.1 49 95-144 122-172 (1134)
51 KOG1039 Predicted E3 ubiquitin 96.5 0.0011 2.4E-08 68.7 1.9 50 94-143 159-221 (344)
52 KOG1785 Tyrosine kinase negati 96.4 0.0013 2.8E-08 68.4 1.6 47 97-144 370-417 (563)
53 COG5219 Uncharacterized conser 96.4 0.0012 2.6E-08 74.6 1.4 51 93-143 1466-1523(1525)
54 KOG1734 Predicted RING-contain 96.2 0.0015 3.2E-08 64.9 0.6 51 95-145 223-283 (328)
55 PF11793 FANCL_C: FANCL C-term 96.0 0.0016 3.4E-08 52.5 -0.2 48 96-143 2-66 (70)
56 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.0083 1.8E-07 60.0 2.8 56 94-151 111-169 (260)
57 KOG4692 Predicted E3 ubiquitin 95.5 0.0085 1.8E-07 61.6 2.7 48 94-143 420-467 (489)
58 KOG1571 Predicted E3 ubiquitin 95.5 0.0066 1.4E-07 62.7 1.9 45 94-143 303-347 (355)
59 KOG4739 Uncharacterized protei 95.4 0.028 6.2E-07 55.2 5.8 44 97-143 4-48 (233)
60 KOG4185 Predicted E3 ubiquitin 95.3 0.014 2.9E-07 59.1 3.5 64 96-160 3-76 (296)
61 KOG0827 Predicted E3 ubiquitin 95.3 0.0089 1.9E-07 62.2 2.0 45 97-141 5-54 (465)
62 COG5194 APC11 Component of SCF 95.2 0.017 3.7E-07 47.5 3.1 31 113-144 52-82 (88)
63 KOG3800 Predicted E3 ubiquitin 95.2 0.015 3.2E-07 58.5 3.2 46 98-143 2-51 (300)
64 smart00744 RINGv The RING-vari 95.2 0.018 3.9E-07 43.2 3.0 41 98-139 1-49 (49)
65 KOG4275 Predicted E3 ubiquitin 95.1 0.0048 1E-07 62.0 -0.7 42 96-143 300-342 (350)
66 KOG3039 Uncharacterized conser 95.0 0.018 3.8E-07 56.8 3.0 49 95-144 220-271 (303)
67 PF11816 DUF3337: Domain of un 94.9 0.063 1.4E-06 55.6 6.8 114 347-469 198-330 (331)
68 KOG1493 Anaphase-promoting com 94.8 0.0079 1.7E-07 49.1 -0.0 30 114-143 50-81 (84)
69 KOG1001 Helicase-like transcri 94.8 0.012 2.7E-07 66.2 1.4 45 97-143 455-500 (674)
70 PF14570 zf-RING_4: RING/Ubox 94.7 0.028 6.1E-07 42.1 2.7 44 99-142 1-47 (48)
71 KOG3002 Zn finger protein [Gen 94.4 0.028 6E-07 57.5 2.9 64 94-165 46-109 (299)
72 KOG0826 Predicted E3 ubiquitin 93.4 0.044 9.6E-07 56.1 2.1 47 95-142 299-345 (357)
73 KOG4445 Uncharacterized conser 93.1 0.027 5.8E-07 57.0 0.1 49 95-143 114-186 (368)
74 PF14447 Prok-RING_4: Prokaryo 93.0 0.044 9.6E-07 42.1 1.1 46 95-144 6-51 (55)
75 PF05290 Baculo_IE-1: Baculovi 92.9 0.075 1.6E-06 47.9 2.5 50 95-144 79-133 (140)
76 KOG1941 Acetylcholine receptor 92.9 0.042 9.1E-07 57.4 1.0 50 94-143 363-416 (518)
77 PF02891 zf-MIZ: MIZ/SP-RING z 92.8 0.073 1.6E-06 40.1 2.0 45 96-141 2-50 (50)
78 KOG2930 SCF ubiquitin ligase, 92.5 0.071 1.5E-06 46.0 1.8 29 114-143 80-108 (114)
79 KOG4362 Transcriptional regula 92.5 0.052 1.1E-06 60.7 1.2 68 90-159 15-84 (684)
80 KOG2817 Predicted E3 ubiquitin 92.2 0.097 2.1E-06 54.9 2.6 49 93-142 331-384 (394)
81 COG5175 MOT2 Transcriptional r 92.0 0.09 1.9E-06 54.0 2.1 46 98-143 16-64 (480)
82 KOG3161 Predicted E3 ubiquitin 91.2 0.12 2.6E-06 57.0 2.2 40 93-136 8-51 (861)
83 COG5220 TFB3 Cdk activating ki 90.7 0.099 2.1E-06 51.5 1.0 48 95-142 9-63 (314)
84 KOG2932 E3 ubiquitin ligase in 90.6 0.12 2.6E-06 52.7 1.4 45 96-143 90-134 (389)
85 KOG1814 Predicted E3 ubiquitin 90.3 0.29 6.2E-06 51.7 3.9 46 95-140 183-237 (445)
86 KOG3039 Uncharacterized conser 89.6 0.27 5.9E-06 48.7 2.9 38 91-129 38-75 (303)
87 PF10367 Vps39_2: Vacuolar sor 89.6 0.14 2.9E-06 43.5 0.7 33 93-125 75-108 (109)
88 KOG3970 Predicted E3 ubiquitin 89.5 0.44 9.5E-06 46.7 4.2 47 97-144 51-106 (299)
89 KOG0298 DEAD box-containing he 89.1 0.12 2.6E-06 61.1 0.1 50 92-142 1149-1198(1394)
90 COG5236 Uncharacterized conser 89.1 0.27 5.8E-06 50.8 2.6 47 95-142 60-107 (493)
91 KOG2114 Vacuolar assembly/sort 89.0 0.21 4.6E-06 56.8 1.9 42 96-141 840-881 (933)
92 PHA03096 p28-like protein; Pro 88.5 0.24 5.3E-06 50.4 1.8 44 97-140 179-231 (284)
93 PF08746 zf-RING-like: RING-li 86.5 0.7 1.5E-05 33.7 2.8 40 99-138 1-43 (43)
94 PF07800 DUF1644: Protein of u 85.9 0.75 1.6E-05 42.8 3.3 19 96-115 2-20 (162)
95 PF03854 zf-P11: P-11 zinc fin 83.7 0.75 1.6E-05 34.5 1.8 42 98-143 4-46 (50)
96 KOG1952 Transcription factor N 83.1 1.9 4.1E-05 49.4 5.5 47 94-140 189-244 (950)
97 KOG1940 Zn-finger protein [Gen 82.4 0.74 1.6E-05 46.6 1.8 44 96-140 158-204 (276)
98 PHA02862 5L protein; Provision 81.8 1.1 2.5E-05 41.0 2.6 47 97-145 3-55 (156)
99 PF05883 Baculo_RING: Baculovi 80.6 0.89 1.9E-05 41.3 1.5 34 96-129 26-67 (134)
100 KOG2169 Zn-finger transcriptio 78.4 1.5 3.3E-05 49.4 2.8 70 93-163 303-375 (636)
101 PHA02825 LAP/PHD finger-like p 76.7 2.6 5.6E-05 39.4 3.3 48 95-144 7-60 (162)
102 KOG2034 Vacuolar sorting prote 76.3 1.3 2.9E-05 50.9 1.6 38 92-129 813-851 (911)
103 PF10272 Tmpp129: Putative tra 75.8 1.7 3.8E-05 45.6 2.2 29 115-143 311-351 (358)
104 KOG1812 Predicted E3 ubiquitin 74.6 1.9 4.1E-05 45.8 2.1 48 96-143 146-203 (384)
105 KOG1428 Inhibitor of type V ad 74.0 3.3 7E-05 50.1 3.9 48 96-143 3486-3544(3738)
106 COG5109 Uncharacterized conser 73.7 2.1 4.6E-05 44.0 2.1 50 92-142 332-386 (396)
107 KOG3579 Predicted E3 ubiquitin 73.1 1.4 2.9E-05 44.7 0.6 35 95-130 267-305 (352)
108 KOG1100 Predicted E3 ubiquitin 72.4 2.3 5E-05 41.4 2.0 39 99-143 161-200 (207)
109 KOG3899 Uncharacterized conser 71.0 2.4 5.3E-05 43.1 1.8 29 115-143 325-365 (381)
110 cd01611 GABARAP Ubiquitin doma 70.0 11 0.00024 33.2 5.6 77 369-468 31-108 (112)
111 cd01612 APG12_C Ubiquitin-like 69.9 13 0.00028 31.2 5.7 80 364-468 3-83 (87)
112 PF12906 RINGv: RING-variant d 68.9 3.3 7.1E-05 30.7 1.7 39 99-138 1-47 (47)
113 COG3813 Uncharacterized protei 67.9 4.3 9.3E-05 33.1 2.3 32 116-151 28-59 (84)
114 KOG1815 Predicted E3 ubiquitin 65.8 3.4 7.4E-05 44.5 1.8 36 94-129 68-103 (444)
115 PF14569 zf-UDP: Zinc-binding 65.8 5.8 0.00013 32.8 2.7 48 96-143 9-62 (80)
116 KOG3268 Predicted E3 ubiquitin 65.8 4.1 8.8E-05 38.8 2.0 48 97-144 166-229 (234)
117 KOG3113 Uncharacterized conser 64.8 5.5 0.00012 39.8 2.8 55 95-152 110-167 (293)
118 KOG1812 Predicted E3 ubiquitin 64.5 3.3 7.1E-05 44.0 1.3 41 95-137 305-350 (384)
119 KOG0825 PHD Zn-finger protein 61.1 7.3 0.00016 44.6 3.2 48 95-142 95-153 (1134)
120 PF07975 C1_4: TFIIH C1-like d 60.4 8.1 0.00018 29.4 2.4 28 111-139 23-50 (51)
121 PF07191 zinc-ribbons_6: zinc- 58.7 1.5 3.3E-05 35.4 -1.8 40 97-143 2-41 (70)
122 PF06906 DUF1272: Protein of u 56.7 9.4 0.0002 29.6 2.2 44 98-144 7-53 (57)
123 KOG0309 Conserved WD40 repeat- 56.4 7.2 0.00016 44.4 2.2 45 97-142 1029-1075(1081)
124 KOG4718 Non-SMC (structural ma 56.2 6 0.00013 38.6 1.4 45 97-142 182-226 (235)
125 PLN02189 cellulose synthase 56.1 7.4 0.00016 46.0 2.4 47 97-143 35-87 (1040)
126 PF04110 APG12: Ubiquitin-like 56.0 18 0.00039 30.6 4.0 82 363-469 2-84 (87)
127 PF02991 Atg8: Autophagy prote 54.5 34 0.00074 29.7 5.7 81 363-466 17-98 (104)
128 PF10571 UPF0547: Uncharacteri 53.0 7.2 0.00016 25.5 1.0 22 98-119 2-24 (26)
129 PLN02638 cellulose synthase A 51.9 9.6 0.00021 45.3 2.4 47 97-143 18-70 (1079)
130 PF02318 FYVE_2: FYVE-type zin 50.3 2.3 4.9E-05 37.5 -2.3 47 95-141 53-103 (118)
131 PLN02436 cellulose synthase A 49.0 11 0.00023 44.8 2.2 47 97-143 37-89 (1094)
132 PF04216 FdhE: Protein involve 48.6 4.4 9.6E-05 41.1 -0.9 44 97-141 173-220 (290)
133 PF10446 DUF2457: Protein of u 47.0 16 0.00035 39.4 2.9 22 16-37 33-54 (458)
134 PF06844 DUF1244: Protein of u 44.3 12 0.00027 29.9 1.2 12 118-129 11-22 (68)
135 PLN02400 cellulose synthase 43.4 12 0.00027 44.4 1.6 47 97-143 37-89 (1085)
136 PLN02195 cellulose synthase A 42.8 17 0.00037 42.9 2.5 47 97-143 7-59 (977)
137 KOG2807 RNA polymerase II tran 42.6 15 0.00032 38.2 1.8 40 99-139 333-374 (378)
138 KOG2979 Protein involved in DN 42.1 13 0.00027 37.4 1.2 46 94-139 174-220 (262)
139 KOG2462 C2H2-type Zn-finger pr 42.0 8.9 0.00019 38.8 0.1 55 94-148 159-231 (279)
140 PF10235 Cript: Microtubule-as 41.8 15 0.00032 31.3 1.4 37 96-143 44-80 (90)
141 COG5183 SSM4 Protein involved 40.7 21 0.00046 41.2 2.8 48 96-144 12-67 (1175)
142 PLN02915 cellulose synthase A 39.1 19 0.00042 42.7 2.3 47 97-143 16-68 (1044)
143 PF11931 DUF3449: Domain of un 38.3 14 0.00029 35.8 0.8 46 78-124 83-134 (196)
144 KOG4185 Predicted E3 ubiquitin 37.4 7 0.00015 39.4 -1.5 44 97-141 208-265 (296)
145 KOG3053 Uncharacterized conser 36.5 27 0.00059 35.2 2.5 49 95-143 19-82 (293)
146 PF14353 CpXC: CpXC protein 36.1 30 0.00065 30.5 2.6 46 97-143 2-49 (128)
147 PF01363 FYVE: FYVE zinc finge 35.5 12 0.00027 29.2 -0.0 34 95-128 8-44 (69)
148 PRK04023 DNA polymerase II lar 35.4 24 0.00051 41.8 2.2 46 95-144 625-675 (1121)
149 TIGR01562 FdhE formate dehydro 35.1 11 0.00024 38.9 -0.4 45 96-141 184-233 (305)
150 cd01803 Ubiquitin Ubiquitin. U 34.7 42 0.00092 26.1 3.0 31 383-413 15-45 (76)
151 PF05605 zf-Di19: Drought indu 33.5 23 0.0005 26.6 1.2 38 96-141 2-40 (54)
152 PF10497 zf-4CXXC_R1: Zinc-fin 33.3 39 0.00084 29.4 2.7 28 116-143 37-72 (105)
153 KOG2068 MOT2 transcription fac 33.2 29 0.00062 36.1 2.2 46 97-143 250-298 (327)
154 PF14446 Prok-RING_1: Prokaryo 33.0 33 0.00071 26.5 1.9 42 96-142 5-51 (54)
155 smart00064 FYVE Protein presen 32.8 28 0.00061 27.1 1.7 34 96-129 10-46 (68)
156 PF00240 ubiquitin: Ubiquitin 32.6 46 0.001 25.5 2.9 31 383-413 10-40 (69)
157 cd01806 Nedd8 Nebb8-like ubiq 32.5 53 0.0011 25.6 3.2 42 365-412 3-44 (76)
158 KOG0314 Predicted E3 ubiquitin 32.0 27 0.00059 37.8 1.9 66 90-157 213-280 (448)
159 TIGR00622 ssl1 transcription f 32.0 31 0.00068 30.5 1.9 42 97-139 56-110 (112)
160 cd00065 FYVE FYVE domain; Zinc 31.8 25 0.00055 26.2 1.2 32 98-129 4-38 (57)
161 KOG0824 Predicted E3 ubiquitin 30.6 15 0.00032 37.8 -0.4 48 95-143 104-151 (324)
162 KOG1829 Uncharacterized conser 30.1 21 0.00046 39.9 0.7 42 95-140 510-558 (580)
163 COG5627 MMS21 DNA repair prote 30.1 33 0.00072 34.2 1.9 44 94-137 187-231 (275)
164 PF12773 DZR: Double zinc ribb 29.1 38 0.00083 24.7 1.8 26 118-143 13-40 (50)
165 PF04423 Rad50_zn_hook: Rad50 28.3 37 0.0008 25.6 1.5 12 133-144 21-32 (54)
166 PRK03564 formate dehydrogenase 28.1 22 0.00048 36.8 0.4 45 95-140 186-234 (309)
167 smart00249 PHD PHD zinc finger 28.1 29 0.00062 24.0 0.9 29 98-126 1-31 (47)
168 COG0068 HypF Hydrogenase matur 27.7 29 0.00064 39.6 1.3 51 94-144 99-185 (750)
169 PF12660 zf-TFIIIC: Putative z 26.7 16 0.00035 31.3 -0.8 46 97-144 15-67 (99)
170 KOG2113 Predicted RNA binding 26.7 37 0.00081 35.2 1.7 47 92-142 339-386 (394)
171 PF09538 FYDLN_acid: Protein o 25.7 39 0.00084 29.6 1.4 14 131-144 25-38 (108)
172 PF01485 IBR: IBR domain; Int 25.6 13 0.00028 28.1 -1.4 31 97-127 19-58 (64)
173 KOG2231 Predicted E3 ubiquitin 25.1 46 0.00099 37.9 2.2 44 98-142 2-51 (669)
174 KOG3439 Protein conjugation fa 24.9 2E+02 0.0043 25.6 5.6 84 359-469 29-113 (116)
175 PF09026 CENP-B_dimeris: Centr 24.7 25 0.00053 30.3 0.0 6 122-127 54-59 (101)
176 PF05502 Dynactin_p62: Dynacti 24.6 31 0.00067 37.9 0.7 51 93-143 2-63 (483)
177 PF04931 DNA_pol_phi: DNA poly 24.0 67 0.0015 37.3 3.4 9 189-197 740-748 (784)
178 PF13901 DUF4206: Domain of un 23.8 58 0.0013 31.4 2.4 41 94-140 150-197 (202)
179 KOG1609 Protein involved in mR 23.7 36 0.00078 34.1 1.0 47 96-143 78-134 (323)
180 TIGR00143 hypF [NiFe] hydrogen 23.6 37 0.0008 39.1 1.1 49 95-143 67-151 (711)
181 KOG3663 Nuclear factor I [Tran 23.5 85 0.0018 33.7 3.6 56 348-404 117-185 (518)
182 COG3492 Uncharacterized protei 23.0 42 0.00091 28.7 1.1 14 117-130 41-54 (104)
183 PRK00420 hypothetical protein; 22.9 28 0.0006 30.8 0.0 11 97-107 24-34 (112)
184 PF13719 zinc_ribbon_5: zinc-r 22.9 48 0.001 23.2 1.2 13 97-109 3-15 (37)
185 cd01776 Rin1_RA Ubiquitin doma 22.7 98 0.0021 26.1 3.1 35 383-417 18-53 (87)
186 PRK06266 transcription initiat 22.6 27 0.00059 33.1 -0.1 14 131-144 135-148 (178)
187 KOG0006 E3 ubiquitin-protein l 22.3 1.1E+02 0.0025 31.8 4.2 30 388-417 23-53 (446)
188 PF11543 UN_NPL4: Nuclear pore 22.2 1.1E+02 0.0025 25.0 3.5 33 383-415 18-50 (80)
189 PTZ00303 phosphatidylinositol 22.0 40 0.00087 38.9 1.0 32 97-128 461-500 (1374)
190 PRK14559 putative protein seri 21.5 48 0.001 37.7 1.5 44 98-142 3-51 (645)
191 cd00350 rubredoxin_like Rubred 21.4 58 0.0013 22.1 1.3 10 132-141 17-26 (33)
192 KOG1356 Putative transcription 21.3 34 0.00074 39.7 0.3 50 95-144 228-283 (889)
193 PF02594 DUF167: Uncharacteris 21.3 71 0.0015 26.2 2.1 38 359-412 26-63 (77)
194 cd01788 ElonginB Ubiquitin-lik 21.3 95 0.0021 27.7 2.9 31 382-412 15-45 (119)
195 KOG3362 Predicted BBOX Zn-fing 21.1 31 0.00066 31.9 -0.1 26 97-124 119-145 (156)
196 PTZ00415 transmission-blocking 21.1 79 0.0017 39.8 3.1 24 363-399 553-577 (2849)
197 PTZ00380 microtubule-associate 21.0 1.3E+02 0.0028 27.0 3.8 59 385-467 47-106 (121)
198 cd01794 DC_UbP_C dendritic cel 20.8 82 0.0018 25.0 2.3 31 382-412 12-42 (70)
199 PRK00647 hypothetical protein; 20.7 74 0.0016 27.4 2.1 38 359-412 27-64 (96)
200 cd01805 RAD23_N Ubiquitin-like 20.4 95 0.0021 24.4 2.6 31 382-412 14-46 (77)
201 cd01798 parkin_N amino-termina 20.1 87 0.0019 24.4 2.3 30 383-412 13-42 (70)
202 smart00154 ZnF_AN1 AN1-like Zi 20.1 60 0.0013 23.1 1.2 24 99-122 1-25 (39)
203 PRK11088 rrmA 23S rRNA methylt 20.0 57 0.0012 32.4 1.5 23 97-119 3-27 (272)
No 1
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=309.84 Aligned_cols=351 Identities=35% Similarity=0.501 Sum_probs=271.7
Q ss_pred CccCCCCCCCCchhHHHhhhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCc
Q 012092 71 SDRSRSSGDGEKDEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRD 150 (471)
Q Consensus 71 d~~s~s~~~~~~~e~~~~~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~ 150 (471)
-++++++.-+...+ +.+.+..+...+.|+||+++++..+++..|+|.||..||...++.+.+.||.||+.+.+++.|++
T Consensus 19 ~er~p~~~~~d~~E-i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 19 KERSPSSYNGDPSE-IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hhcChhhhcCCchh-heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence 34455555454444 77788889999999999999999998889999999999999999889999999999999999999
Q ss_pred cHHHHHHHHHHccchhhhHHHHhhcchHHHHHHHH-HHHHHHHhHHHHHHhhhcccCCcchhhhhcccCCCCCCCCCCCC
Q 012092 151 DLNYDALIAALYPDIDKYEEEELAFQDEEAARNKQ-IQASIAQTFQRQTEALGRKRTPKSTSALRRSHGRYRDTPLRGRR 229 (471)
Q Consensus 151 n~~l~~li~~l~p~c~~~eeel~~~ceed~~~~k~-i~~hl~~~~~r~~~al~KkR~~~~aa~~~R~r~~~r~~~~r~r~ 229 (471)
++.+..||.++++.+..++.....|.+.+.....+ |+.++++..++|...+.+++....- |+.+.. .++++++
T Consensus 98 Dp~fdaLis~i~~sie~~e~~q~~~~ekd~~~~~q~i~~si~~~~~~qs~~~~kr~a~~~~----~s~r~g--~Gs~~~g 171 (381)
T KOG0311|consen 98 DPNFDALISKIYPSIEEYEAPQPRFMEKDDSAQIQYIKTSINAAVDHQSSYLTKRKALEEL----RSIRWG--GGSRRRG 171 (381)
T ss_pred CccHHHHHHHHhccHHHHhccchhHHhhHHHHhHHHHhhhHHHHHhhhhhhhhhhhccccc----cccccc--CCCCCCC
Confidence 99999999999999998888888888876655544 9999999999999999988876443 222222 2445555
Q ss_pred CCcccccCC-C-CCCCCCCC---CCCCCCCCCCcCCCccCCcccccccCCCCCCC-CCCCCCCCCCCCCCChhhhhcccC
Q 012092 230 NYRMTELQG-S-DENDDANG---DAGKDSSSADERSTEVRPKRRKRWYGARFSQS-SSAAAGTDGGGDENDSEVHRESMG 303 (471)
Q Consensus 230 ~~~~~~~~~-~-~~~~d~~~---d~~~~sss~~~~~~~~~~~r~~~~~~~~~~~~-ss~~~~~~~~~~~~d~~~~~~~~~ 303 (471)
+.+...... + -+++|+++ +.++++|+ |+. --.++..++......-+ ++.++..+..++.+|.+..+++.+
T Consensus 172 n~r~~~~s~~~a~~ea~~~~~~n~rg~~ss~-d~~---~~~~~~~~S~d~~~~~~~~s~as~~~~~~~~a~te~~~~~~~ 247 (381)
T KOG0311|consen 172 NVRNVEQSKKSAPKEADGNDDENDRGKDSSS-DEL---MDFPREIRSSDREQTHPSSSGASMNDSNCAGADTEDVRDSST 247 (381)
T ss_pred CcccchhccccCCccCCCccccccccccccc-ccc---ccccccccccccccCCCCccccccCCCcccCCCCcccccccc
Confidence 655532211 1 11222222 33455555 333 22333333333221122 344454677888888888899999
Q ss_pred CCCCCCCCccccccccCCccCCcccCCcC-CCCCCcccchhhHHHHHHHhhcccccCceeEEEEEeeccccCCCCCCCCc
Q 012092 304 ASVGLIGPSERLAWGKGGIRSHTRHGSVS-GSNGKNARNNRLSKLVDYLQSLEEKDDQLDMHLVLVSLDEQRIPGLQQPY 382 (471)
Q Consensus 304 ~~~~~~~~~~~~~wg~~g~rs~~r~g~~~-~~~~~~~~~~~~~~~~~~l~~~~e~~~e~~~~~~l~~~d~~~~p~l~~py 382 (471)
+++++||+.+..+||++|+|+.||+|++. |.-..++|.++..++++|++..+...++
T Consensus 248 i~r~~v~~~e~~~s~r~~~~~~t~n~~~~~~~k~~~vr~a~~~~~~e~~~~~~G~S~~---------------------- 305 (381)
T KOG0311|consen 248 ISRTLVWNRESSESGRGGTRSNTRNGNNKMGRKSLAVRNALEVRLSEYDGSVEGTSNI---------------------- 305 (381)
T ss_pred cccccccccccchhccCCccccccccccccccchhhhhHHHHHHhhhhcccccccccc----------------------
Confidence 99999999999999999999999999953 4445667999999999999966655555
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchhhhhccc-cCCCcce
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFL 461 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl~~l~~~-~~~~~~l 461 (471)
|||.+..+..+++|+++... ++......+.++++|+|++|+|.+|++++||+.|+.+ |..++.|
T Consensus 306 --------------~~~~~~~~~~~~~~~~~~~~-~~~d~~~enn~~iy~a~~~~~~~~Lng~~Tls~v~~df~kvn~~m 370 (381)
T KOG0311|consen 306 --------------KVAKKKPLKREEVELLVELI-HPLDTASENNYTIYIATSKDQFTSLNGDETLSLVKEDFWKVNEPM 370 (381)
T ss_pred --------------cccccCCccccccccccccc-ccccccccccceeEeecCCCceEEecccchHHHHhhhhhhcccch
Confidence 99999999999999888776 3444455568999999999999999999999999999 9999999
Q ss_pred eehhhhhh
Q 012092 462 LLAYQKIL 469 (471)
Q Consensus 462 ~l~y~~k~ 469 (471)
+|.|..|.
T Consensus 371 ~l~~~~kk 378 (381)
T KOG0311|consen 371 ELSYHEKK 378 (381)
T ss_pred hhhhchhc
Confidence 99998774
No 2
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=99.34 E-value=3.2e-12 Score=128.27 Aligned_cols=81 Identities=28% Similarity=0.666 Sum_probs=70.5
Q ss_pred HHhhhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc---CCcCCccHHHHHHHHHHc
Q 012092 86 VIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS---RRSLRDDLNYDALIAALY 162 (471)
Q Consensus 86 ~~~~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~---~~~l~~n~~l~~li~~l~ 162 (471)
..+.+..+...++|.+|.++|.++.+|+.|.|+||+.||.+++.. ...||.|...+.. ...++.|..+++|+.+|+
T Consensus 5 ~~vk~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKLV 83 (331)
T KOG2660|consen 5 RRVKLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKLV 83 (331)
T ss_pred hhhhhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHHc
Confidence 345667788899999999999999999999999999999999985 7899999987753 246889999999999999
Q ss_pred cchhh
Q 012092 163 PDIDK 167 (471)
Q Consensus 163 p~c~~ 167 (471)
|...+
T Consensus 84 Pgl~e 88 (331)
T KOG2660|consen 84 PGLQE 88 (331)
T ss_pred chHHH
Confidence 98653
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.10 E-value=9.4e-11 Score=91.17 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=54.6
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHH
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAA 160 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~ 160 (471)
++.||||++++.+|+. ++|||+||+.||..|+.. ...||.|+..+. ...+.++..+++.|..
T Consensus 1 ~~~Cpi~~~~~~~Pv~-~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~-~~~l~~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVMKDPVI-LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT-HEDLIPNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcCCCCEE-CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC-hhhceeCHHHHHHHHh
Confidence 3689999999999995 999999999999999985 678999999986 4778889888887764
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=6.7e-11 Score=85.93 Aligned_cols=39 Identities=36% Similarity=1.095 Sum_probs=30.8
Q ss_pred ccccccccccceeeccCCCcchHHHHHHHhhcCC---CCCCcc
Q 012092 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGN---NECPAC 138 (471)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~---~~CP~C 138 (471)
||||+++|.+||+ ++|||+||..||..|+.... ..||.|
T Consensus 1 CpiC~~~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999997 99999999999999998432 479987
No 5
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=2e-10 Score=120.04 Aligned_cols=70 Identities=23% Similarity=0.602 Sum_probs=61.4
Q ss_pred hhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+..++..+.|+||+++|.+|+ +++|||+||..||..|+.. ...||+|+..+.. ..++.|..|.+||+.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~~Pv-itpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~-~~Lr~N~~L~~iVe~~~ 89 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPV-LTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE-SKLRSNWLVSEIVESFK 89 (397)
T ss_pred ccccccccCCCcCchhhhCcc-CCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc-ccCccchHHHHHHHHHH
Confidence 456788999999999999999 4999999999999999984 4689999999873 57899999999998764
No 6
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.00 E-value=4.4e-10 Score=91.02 Aligned_cols=66 Identities=18% Similarity=0.290 Sum_probs=54.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+.|.||||..++.+||. ++|||+|++.||..|+..+...||.|+.++. ...+.+|..|++.|+.+.
T Consensus 3 ~~f~CpIt~~lM~dPVi-~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~ 68 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVI-LPSGHTYERSAIERWLEQNGGTDPFTRQPLS-ESDLIPNRALKSAIEEWC 68 (73)
T ss_dssp GGGB-TTTSSB-SSEEE-ETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S-GGGSEE-HHHHHHHHHHH
T ss_pred cccCCcCcCcHhhCcee-CCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC-cccceECHHHHHHHHHHH
Confidence 57899999999999995 9999999999999999976789999999988 478999999999998873
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.94 E-value=7.2e-10 Score=104.98 Aligned_cols=49 Identities=31% Similarity=0.737 Sum_probs=42.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhc---------------CCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL---------------GNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~---------------~~~~CP~Cr~~~~~ 144 (471)
..+.|+||++.+.+|+. ++|||.||..||..|+.. ....||+|+..+..
T Consensus 17 ~~~~CpICld~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 56889999999999995 999999999999999852 23589999998863
No 8
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.94 E-value=3e-10 Score=89.01 Aligned_cols=63 Identities=27% Similarity=0.719 Sum_probs=36.2
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHH
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 158 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li 158 (471)
.++..+.|++|.++|++||.+..|.|.||..||...+. ..||+|..+.. ..+++.|..|+++|
T Consensus 3 ~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 3 RLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp HHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S--SS----HHHHHHH
T ss_pred HHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHH-HHHHHhhhhhhccC
Confidence 35567899999999999998789999999999988664 46999999987 47899999998876
No 9
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=6.3e-10 Score=79.20 Aligned_cols=39 Identities=49% Similarity=1.171 Sum_probs=34.4
Q ss_pred ccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcc
Q 012092 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138 (471)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (471)
|+||++.+.+|+.+++|||.||..||.+|+.. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999767999999999999999996 6899988
No 10
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.91 E-value=4.7e-10 Score=112.72 Aligned_cols=69 Identities=26% Similarity=0.645 Sum_probs=60.2
Q ss_pred hhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHH
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
+..+...+.|-||.++|..|+ +++|+|+||..||..++. ....||.|+..+. ...++.+..+.+||..|
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~-itpCsHtfCSlCIR~~L~-~~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPM-ITPCSHTFCSLCIRKFLS-YKPQCPTCCVTVT-ESDLRNNRILDEIVKSL 85 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCce-eccccchHHHHHHHHHhc-cCCCCCceecccc-hhhhhhhhHHHHHHHHH
Confidence 445667899999999999999 599999999999999998 4689999999997 46789999999998764
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.9e-09 Score=103.95 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=43.6
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhc--CCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~~ 144 (471)
..|.|.||++.-++|| |+.|||.||..||.+|+.. ....||+|+..+..
T Consensus 46 ~~FdCNICLd~akdPV-vTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPV-VTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CceeeeeeccccCCCE-EeecccceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 5689999999999999 6999999999999999983 45689999998873
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.9e-09 Score=98.93 Aligned_cols=49 Identities=37% Similarity=0.950 Sum_probs=41.3
Q ss_pred ccccccccccccccceee-ccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTV-MECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v-~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..+.|||||+.+.+-+.+ +.|||.||..||...++ ....||+|++.+..
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk-~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALK-NTNKCPTCRKKITH 179 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHH-hCCCCCCcccccch
Confidence 458999999999854422 89999999999999998 45799999998764
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.77 E-value=3e-09 Score=77.52 Aligned_cols=41 Identities=41% Similarity=0.974 Sum_probs=34.6
Q ss_pred cccccccccc--cceeeccCCCcchHHHHHHHhhcCCCCCCccc
Q 012092 98 QCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (471)
Q Consensus 98 ~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr 139 (471)
.|+||++.|. +.+..++|+|.||..||..|++. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999995 45556899999999999999985 57999997
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.76 E-value=5.5e-09 Score=74.74 Aligned_cols=40 Identities=40% Similarity=1.066 Sum_probs=36.8
Q ss_pred ccccccccccceeeccCCCcchHHHHHHHhh-cCCCCCCcc
Q 012092 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPAC 138 (471)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~C 138 (471)
|+||++.+..|+.+++|||.||..||..|+. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999999996699999999999999998 566789988
No 15
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.3e-09 Score=102.70 Aligned_cols=85 Identities=33% Similarity=0.706 Sum_probs=67.3
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHcc-------
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP------- 163 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p------- 163 (471)
..+.+.+.|+||++.|..|+ +++|||+||..||..++. ....||.||. .. ..+.++..+.+++..+..
T Consensus 8 ~~~~~~~~C~iC~~~~~~p~-~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~--~~~~~n~~l~~~~~~~~~~~~~~~~ 82 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFREPV-LLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS--RNLRPNVLLANLVERLRQLRLSRPL 82 (386)
T ss_pred hhccccccChhhHHHhhcCc-cccccchHhHHHHHHhcC-CCcCCcccCC-ch--hccCccHHHHHHHHHHHhcCCcccc
Confidence 44567899999999999995 699999999999999988 6689999996 33 267789999998887532
Q ss_pred -----chhhhHHHHhhcchHHH
Q 012092 164 -----DIDKYEEEELAFQDEEA 180 (471)
Q Consensus 164 -----~c~~~eeel~~~ceed~ 180 (471)
.|..|.+.+.+||+.+.
T Consensus 83 ~~~~~~c~~~~~~~~~~c~~~~ 104 (386)
T KOG2177|consen 83 GSKEELCEKHGEELKLFCEEDE 104 (386)
T ss_pred cccchhhhhcCCcceEEecccc
Confidence 36666666667775544
No 16
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.1e-09 Score=103.80 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=44.1
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccC
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~ 145 (471)
+....|.||++...+|.. +||||.||..||..|... ...||+||..+.+.
T Consensus 237 ~a~~kC~LCLe~~~~pSa-TpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSA-TPCGHIFCWSCILEWCSE-KAECPLCREKFQPS 286 (293)
T ss_pred CCCCceEEEecCCCCCCc-CcCcchHHHHHHHHHHcc-ccCCCcccccCCCc
Confidence 356899999999999985 999999999999999984 56799999998753
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.70 E-value=1.2e-08 Score=72.58 Aligned_cols=44 Identities=50% Similarity=1.136 Sum_probs=38.8
Q ss_pred cccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 98 QCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
.|+||++.+..++.+.+|||.||..|+..|+......||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 49999999988887677999999999999998656789999875
No 18
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.69 E-value=1.2e-08 Score=76.40 Aligned_cols=46 Identities=33% Similarity=0.905 Sum_probs=39.9
Q ss_pred cccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+..|+||++.+.+++. ++|||. ||..|+..|+. ....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVL-LPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEE-ETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEE-eCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 4689999999999885 999999 99999999998 6789999999875
No 19
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.67 E-value=1.3e-08 Score=99.86 Aligned_cols=50 Identities=38% Similarity=0.824 Sum_probs=40.8
Q ss_pred Cccccccccccccccc-------eeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.....|+||++.+.++ ..+++|+|.||..||..|+. ....||+||..+..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-~~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-EKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-cCCCCCCCCCEeeE
Confidence 3467899999987653 12468999999999999998 56799999998863
No 20
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.61 E-value=2.9e-08 Score=98.26 Aligned_cols=67 Identities=24% Similarity=0.490 Sum_probs=54.5
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHH
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
.+..-+.|-||..+|..|+ +++|||+||..||...+. ....||+||..+.. .-++.+..+.++++.+
T Consensus 21 ~LDs~lrC~IC~~~i~ip~-~TtCgHtFCslCIR~hL~-~qp~CP~Cr~~~~e-srlr~~s~~~ei~es~ 87 (391)
T COG5432 21 GLDSMLRCRICDCRISIPC-ETTCGHTFCSLCIRRHLG-TQPFCPVCREDPCE-SRLRGSSGSREINESH 87 (391)
T ss_pred cchhHHHhhhhhheeecce-ecccccchhHHHHHHHhc-CCCCCccccccHHh-hhcccchhHHHHHHhh
Confidence 4556789999999999999 499999999999999998 46789999998753 3466666667766643
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.41 E-value=2e-07 Score=63.93 Aligned_cols=39 Identities=49% Similarity=1.194 Sum_probs=34.4
Q ss_pred ccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcc
Q 012092 99 CPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPAC 138 (471)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (471)
|+||++....++. ++|+|.||..|+..|+......||+|
T Consensus 1 C~iC~~~~~~~~~-~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVV-LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEE-ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999888874 99999999999999998556789987
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.1e-07 Score=98.55 Aligned_cols=48 Identities=35% Similarity=0.770 Sum_probs=42.5
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhc----CCCCCCcccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL----GNNECPACRTHCAS 144 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~----~~~~CP~Cr~~~~~ 144 (471)
...||||+....-|+. +.|||.||..||..+|.. +...||+|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccc-cccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999999999996 789999999999999873 34589999999875
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=98.39 E-value=2e-07 Score=89.72 Aligned_cols=51 Identities=33% Similarity=0.765 Sum_probs=39.6
Q ss_pred cCccccccccccccccc--------eeeccCCCcchHHHHHHHhhcC-----CCCCCccccccc
Q 012092 93 IRKEVQCPICLGIIRKT--------RTVMECLHRFCRECIDKAMRLG-----NNECPACRTHCA 143 (471)
Q Consensus 93 l~~~l~CpICl~~~~~P--------v~v~~CgH~FC~~CI~~~l~~~-----~~~CP~Cr~~~~ 143 (471)
...+..|+||++...++ -.+.+|+|.||..||..|.... ...||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678999999886432 1246899999999999998732 346999999875
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.38 E-value=1.6e-07 Score=68.66 Aligned_cols=36 Identities=33% Similarity=0.949 Sum_probs=22.1
Q ss_pred cccccccccc----ceeeccCCCcchHHHHHHHhhcC---CCCCC
Q 012092 99 CPICLGIIRK----TRTVMECLHRFCRECIDKAMRLG---NNECP 136 (471)
Q Consensus 99 CpICl~~~~~----Pv~v~~CgH~FC~~CI~~~l~~~---~~~CP 136 (471)
||||.+ |.+ |+. ++|||+||..||.+++..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 877 884 8999999999999999843 45777
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=3e-07 Score=67.18 Aligned_cols=42 Identities=31% Similarity=0.826 Sum_probs=34.7
Q ss_pred ccccccccc--ccceeeccCCCcchHHHHHHHhhcCCCCCCcccc
Q 012092 98 QCPICLGII--RKTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (471)
Q Consensus 98 ~CpICl~~~--~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~ 140 (471)
.|+||...+ ..+..+++|||+||..|+..+. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 499999999 3344579999999999999987 35679999985
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.8e-07 Score=92.02 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=43.8
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHH-HhhcCCCCCCccccccccC
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDK-AMRLGNNECPACRTHCASR 145 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~-~l~~~~~~CP~Cr~~~~~~ 145 (471)
..++.|+||++....|.. ++|||.||..||.. |.......||+||+.+.++
T Consensus 213 ~~d~kC~lC~e~~~~ps~-t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVPSC-TPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCccc-ccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 357899999999999996 99999999999999 6665555699999988753
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.2e-07 Score=101.26 Aligned_cols=61 Identities=23% Similarity=0.671 Sum_probs=52.9
Q ss_pred hhHHHhhhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 83 DEFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 83 ~e~~~~~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+.....+..+..-++||+|..-+.+.| ++.|+|.||..||...+......||.|.+.|..
T Consensus 630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~v-I~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 630 DEVLAEELKEYKELLKCSVCNTRWKDAV-ITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred cHHHHHHHHHHHhceeCCCccCchhhHH-HHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3445555667788899999999999999 599999999999999998778899999999985
No 28
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=8.2e-07 Score=89.97 Aligned_cols=49 Identities=31% Similarity=0.722 Sum_probs=38.8
Q ss_pred cccccccccc-cccce---eeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 96 EVQCPICLGI-IRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 96 ~l~CpICl~~-~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+..||||... +.+|. .+.+|||.||..||..+|..+...||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4579999973 33443 3347999999999999887677899999998864
No 29
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.5e-07 Score=89.38 Aligned_cols=50 Identities=38% Similarity=0.748 Sum_probs=43.3
Q ss_pred ccccccccccccc--cceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
....|.|||.-|. +.+.++||.|.|+..|+.+|+..-...||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3478999999886 5677899999999999999998667899999998763
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.21 E-value=9.3e-07 Score=71.70 Aligned_cols=41 Identities=34% Similarity=0.711 Sum_probs=32.7
Q ss_pred cccccccccc------------cceeeccCCCcchHHHHHHHhhcCCCCCCccc
Q 012092 98 QCPICLGIIR------------KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (471)
Q Consensus 98 ~CpICl~~~~------------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr 139 (471)
.|+||+..|. -++.+.+|||.|+..||.+|+. ....||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK-QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT-TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh-cCCcCCCCC
Confidence 4999999993 2444468999999999999998 456999997
No 31
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.15 E-value=8.7e-07 Score=93.34 Aligned_cols=72 Identities=24% Similarity=0.592 Sum_probs=57.3
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccch
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c 165 (471)
+...+.|++|+..+.+|+..+.|||.||..|+..|+.. ...||.|+..+.....+.........+.++...|
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~c 89 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIRC 89 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhccccc
Confidence 56789999999999999974599999999999999985 7899999998876555554555556666555444
No 32
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.1e-06 Score=90.43 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=41.3
Q ss_pred ccccccccccc--cceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..|.||++.|. +-+.++||.|.|+..||..|+......||+|+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 48999999998 667789999999999999999876567999998664
No 33
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=80.26 Aligned_cols=46 Identities=33% Similarity=0.853 Sum_probs=41.0
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
.+.||+|..++++|+.+..|+|.||..||...|-..-+.||.|...
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 3899999999999998568999999999999887777999999653
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.80 E-value=1.3e-05 Score=62.04 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=31.9
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhh-cCCCCCCc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPA 137 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~ 137 (471)
...+.|||.+..|.+||.-..|+|+|.+..|..|+. .+...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 356899999999999998779999999999999994 34568998
No 35
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.76 E-value=1.3e-05 Score=75.95 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=47.7
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHH
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIA 159 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~ 159 (471)
-.|.|-||...|..|| ++.|||.||..|..+-++. ...|-+|.+... ..+.+...|+.++.
T Consensus 195 IPF~C~iCKkdy~spv-vt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~--G~f~V~~d~~kmL~ 255 (259)
T COG5152 195 IPFLCGICKKDYESPV-VTECGHSFCSLCAIRKYQK-GDECGVCGKATY--GRFWVVSDLQKMLN 255 (259)
T ss_pred Cceeehhchhhccchh-hhhcchhHHHHHHHHHhcc-CCcceecchhhc--cceeHHhhHHHHHh
Confidence 3589999999999999 5999999999999887774 578999988653 33444555665554
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.3e-05 Score=82.47 Aligned_cols=50 Identities=34% Similarity=0.840 Sum_probs=44.7
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+..+|.|.||+.+|..|++ ++|||.||..||.+.+. ....||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~-tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVV-TPCGHSFCLECLDRSLD-QETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCcc-ccccccccHHHHHHHhc-cCCCCccccccccc
Confidence 4678999999999999996 89999999999999877 56899999998863
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.9e-05 Score=79.09 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=42.4
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
-.|+||+....-|+. +.|+|.||..||......+...|++||.+|..
T Consensus 8 ~eC~IC~nt~n~Pv~-l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 8 KECLICYNTGNCPVN-LYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CcceeeeccCCcCcc-ccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 469999999999985 99999999999998877677889999999974
No 38
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.6e-05 Score=80.00 Aligned_cols=48 Identities=21% Similarity=0.622 Sum_probs=39.9
Q ss_pred Cccccccccccccc-c------------ceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIR-K------------TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~-~------------Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..+-.|.||++-+. . |.. ++|||.|+..|+..|+. +..+||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~E-RqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLE-RQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCccc-ccccceeeHHHHHHHHH-hccCCCcccCccc
Confidence 35679999998743 2 355 89999999999999998 5789999999854
No 39
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.60 E-value=5.4e-05 Score=63.09 Aligned_cols=48 Identities=27% Similarity=0.539 Sum_probs=35.7
Q ss_pred cccccccccccc-----------c-ceeeccCCCcchHHHHHHHhhc--CCCCCCccccccc
Q 012092 96 EVQCPICLGIIR-----------K-TRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~-----------~-Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~ 143 (471)
+-.|.||...|. + |+.+-.|+|.|+..||.+|+.. ....||+||+.+.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345666665554 2 4434579999999999999984 3579999999875
No 40
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.57 E-value=2.5e-05 Score=83.09 Aligned_cols=96 Identities=23% Similarity=0.361 Sum_probs=67.9
Q ss_pred cccchhhhhccCCCCCceecChhhHHHhhhcCCCCcccccccCCCcccCCCCCCCCcccccCCCCCCCccCCCCCCCCch
Q 012092 4 QKRSYENATTNNNNNNHIIITPSEVVEAVLDDDGDDTLQRDHSNNLEEQQPPQDSTPAAAADVDGNESDRSRSSGDGEKD 83 (471)
Q Consensus 4 qkrs~~~~~~~~n~~~~i~~~~se~~e~vleed~d~~~~~de~~eeeedee~ede~~~d~~d~~~~Ed~~s~s~~~~~~~ 83 (471)
+++.|-..++.+||+.||+.....+.+++-..+----. ....-.+
T Consensus 487 kfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S----~~~n~~~------------------------------- 531 (791)
T KOG1002|consen 487 KFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYS----ANANLPD------------------------------- 531 (791)
T ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeeh----hhcCCCc-------------------------------
Confidence 34566677899999999999988888876554432110 0000000
Q ss_pred hHHHhhhhccCccccccccccccccceeeccCCCcchHHHHHHHhh----cCCCCCCccccccc
Q 012092 84 EFVIVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTHCA 143 (471)
Q Consensus 84 e~~~~~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~Cr~~~~ 143 (471)
.-.....|.+|.+.-.+++ +..|-|.||+.||.+++. ..+-+||+|...++
T Consensus 532 --------enk~~~~C~lc~d~aed~i-~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 --------ENKGEVECGLCHDPAEDYI-ESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred --------cccCceeecccCChhhhhH-hhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 0013467999999999999 599999999999988875 23469999998775
No 41
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=3.4e-05 Score=84.60 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=40.3
Q ss_pred cccccccccccccc-----ceeeccCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 95 KEVQCPICLGIIRK-----TRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~~-----Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
....|+||.+.+.. |. .++|+|.||..|+..|+.. ...||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~-rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPK-RLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccc-eeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 45689999999998 55 4999999999999999994 68999999944
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=5e-05 Score=76.00 Aligned_cols=56 Identities=23% Similarity=0.479 Sum_probs=44.5
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHH
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYD 155 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~ 155 (471)
.+.|-||...|..|| ++.|+|+||..|...-++ ....|++|.+.+. ..+.+...|.
T Consensus 241 Pf~c~icr~~f~~pV-vt~c~h~fc~~ca~~~~q-k~~~c~vC~~~t~--g~~~~akeL~ 296 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPV-VTKCGHYFCEVCALKPYQ-KGEKCYVCSQQTH--GSFNVAKELL 296 (313)
T ss_pred Cccccccccccccch-hhcCCceeehhhhccccc-cCCcceecccccc--cccchHHHHH
Confidence 467999999999999 599999999999988777 4578999998774 3344444343
No 43
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.9e-05 Score=74.33 Aligned_cols=49 Identities=22% Similarity=0.586 Sum_probs=41.7
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh-cCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~Cr~~~~ 143 (471)
...+||+|.+....|..+.+|+|.||..||..... ...+.||.|...+.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45789999999999998778999999999988654 23579999998775
No 44
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.45 E-value=8.4e-05 Score=77.57 Aligned_cols=34 Identities=26% Similarity=0.895 Sum_probs=30.6
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHh
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM 128 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l 128 (471)
++++.|+||..+|.+|+ +++|+|..|..|....+
T Consensus 2 eeelkc~vc~~f~~epi-il~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPI-ILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCce-EeecccHHHHHHHHhhc
Confidence 46799999999999999 59999999999987655
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=6.9e-05 Score=57.11 Aligned_cols=46 Identities=24% Similarity=0.535 Sum_probs=39.8
Q ss_pred ccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.|.||++...+.| +..|||. .|..|-.+.++.....||.||+++.
T Consensus 8 dECTICye~pvdsV-lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSV-LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHH-HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 46999999999988 4889996 7999999888866789999999874
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.91 E-value=0.00031 Score=73.84 Aligned_cols=47 Identities=28% Similarity=0.656 Sum_probs=38.2
Q ss_pred Cccccccccccccccce---eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-+--+||||++.+..-+ ..+.|.|.|...|+..|+. ..||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence 35569999999998654 3478999999999999975 68999997543
No 47
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00049 Score=73.05 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=39.0
Q ss_pred Cccccccccccccc-----cc-----------eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIR-----KT-----------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~-----~P-----------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+....|+|||..+. .+ ..++||.|.|+..|+..|+..-.-.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 34567999998654 11 2346999999999999999854568999999875
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00065 Score=69.85 Aligned_cols=46 Identities=35% Similarity=0.756 Sum_probs=38.7
Q ss_pred cccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
...|-||+.-.++.+ |+||.|. .|..|.....- ..+.||+||+++.
T Consensus 290 gkeCVIClse~rdt~-vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTV-VLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceE-EecchhhehhHhHHHHHHH-hhcCCCccccchH
Confidence 357999999999998 6999997 69999877543 4578999999985
No 49
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0028 Score=66.13 Aligned_cols=61 Identities=26% Similarity=0.641 Sum_probs=44.9
Q ss_pred cccccccccccccce----eeccCCCcchHHHHHHHhhc-CCCCCCccccccccCCcCCccHHHHHH
Q 012092 96 EVQCPICLGIIRKTR----TVMECLHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRDDLNYDAL 157 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv----~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~l 157 (471)
..+||||++-+.-|. ..+.|||.|-..||.+|+.+ ....||.|...-. ++.+++-+.++.+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHHHH
Confidence 468999999887543 23689999999999999963 2358999987665 4556655554433
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.54 E-value=0.0006 Score=75.68 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=38.8
Q ss_pred ccccccccccccccceee--ccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTV--MECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v--~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..-.||+|+.-|.+-... .+|+|.||..||..|.+ ...+||+||..|..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 345899999887754321 47999999999999988 46799999998753
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0011 Score=68.67 Aligned_cols=50 Identities=32% Similarity=0.755 Sum_probs=39.3
Q ss_pred Cccccccccccccccce------e-eccCCCcchHHHHHHHhhcC------CCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRKTR------T-VMECLHRFCRECIDKAMRLG------NNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv------~-v~~CgH~FC~~CI~~~l~~~------~~~CP~Cr~~~~ 143 (471)
..+..|.||++...+.. . +.+|.|.||..||..|-... ...||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999887654 1 24699999999999998421 478999998764
No 52
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.43 E-value=0.0013 Score=68.39 Aligned_cols=47 Identities=23% Similarity=0.595 Sum_probs=38.9
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhc-CCCCCCcccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~~ 144 (471)
-.|.||-+--++-. +-+|||..|..|+..|... ....||.||..+.-
T Consensus 370 eLCKICaendKdvk-IEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVK-IEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcc-cccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 36999998777654 6899999999999999853 36899999998754
No 53
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.43 E-value=0.0012 Score=74.60 Aligned_cols=51 Identities=22% Similarity=0.672 Sum_probs=39.7
Q ss_pred cCccccccccccccc--c---c-eeeccCCCcchHHHHHHHhhc-CCCCCCccccccc
Q 012092 93 IRKEVQCPICLGIIR--K---T-RTVMECLHRFCRECIDKAMRL-GNNECPACRTHCA 143 (471)
Q Consensus 93 l~~~l~CpICl~~~~--~---P-v~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~ 143 (471)
+...-.|+||..++. + | .++..|.|.|+..|+.+|++. ++..||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344568999998876 1 1 234569999999999999984 5679999998765
No 54
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0015 Score=64.90 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=39.3
Q ss_pred ccccccccccccccce---------eeccCCCcchHHHHHHHhhc-CCCCCCccccccccC
Q 012092 95 KEVQCPICLGIIRKTR---------TVMECLHRFCRECIDKAMRL-GNNECPACRTHCASR 145 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~~~ 145 (471)
++-.|.||.+-+...+ -.+.|+|.|+..||..|.-. ...+||.|+..+..+
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3457999988766332 22789999999999999864 356999999987653
No 55
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.02 E-value=0.0016 Score=52.48 Aligned_cols=48 Identities=25% Similarity=0.547 Sum_probs=23.1
Q ss_pred cccccccccccc----cceeec---cCCCcchHHHHHHHhhc---C-------CCCCCccccccc
Q 012092 96 EVQCPICLGIIR----KTRTVM---ECLHRFCRECIDKAMRL---G-------NNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~----~Pv~v~---~CgH~FC~~CI~~~l~~---~-------~~~CP~Cr~~~~ 143 (471)
++.|+||+..+. .|..+- .|++.|+..|+..|+.. . ...||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998754 233222 69999999999999862 1 126999999876
No 56
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.57 E-value=0.0083 Score=60.03 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=42.4
Q ss_pred Ccccccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCcc
Q 012092 94 RKEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDD 151 (471)
Q Consensus 94 ~~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n 151 (471)
...+.|||+...|.. -|.+.+|||+|+..+|...- ....||+|..+|.....+..+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEEec
Confidence 356899999998852 34456999999999999873 346799999999854444433
No 57
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.0085 Score=61.60 Aligned_cols=48 Identities=27% Similarity=0.596 Sum_probs=41.6
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.++-.||||.--...+|+ .||+|.-|..||.+.+- +.+.|-.|++.+.
T Consensus 420 sEd~lCpICyA~pi~Avf-~PC~H~SC~~CI~qHlm-N~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVF-APCSHRSCYGCITQHLM-NCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhc-cCCCCchHHHHHHHHHh-cCCeeeEecceee
Confidence 466789999998889996 99999999999999876 4678999988765
No 58
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0066 Score=62.69 Aligned_cols=45 Identities=24% Similarity=0.573 Sum_probs=36.1
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.....|.||++-+.+.+. ++|||..| |+.-... ...||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~~~f-vpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVF-VPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceee-ecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 345689999999999987 99999977 7655443 456999999875
No 59
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.40 E-value=0.028 Score=55.24 Aligned_cols=44 Identities=25% Similarity=0.738 Sum_probs=33.1
Q ss_pred cccccccccc-ccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGII-RKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~-~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+.|-.|...- .+|..++.|.|+||..|...... ..||.|++.+.
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence 4577776543 47788899999999999865432 38999999864
No 60
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.014 Score=59.07 Aligned_cols=64 Identities=27% Similarity=0.535 Sum_probs=49.5
Q ss_pred cccccccccccc------cceeeccCCCcchHHHHHHHhhcCCCCCCcccccc--cc--CCcCCccHHHHHHHHH
Q 012092 96 EVQCPICLGIIR------KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC--AS--RRSLRDDLNYDALIAA 160 (471)
Q Consensus 96 ~l~CpICl~~~~------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~--~~--~~~l~~n~~l~~li~~ 160 (471)
.+.|-||.+.|. .|. ++.|||+||..|+...+......||.||.+. .. ...+..|+.+..++..
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~-~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~ 76 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPR-VLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEH 76 (296)
T ss_pred CCceeecCccccccCcccCCc-ccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHH
Confidence 357999988876 465 5889999999999999887778999999984 21 2347777777777655
No 61
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.0089 Score=62.16 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=32.8
Q ss_pred ccccccccccccce---eeccCCCcchHHHHHHHhhcCC--CCCCccccc
Q 012092 97 VQCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGN--NECPACRTH 141 (471)
Q Consensus 97 l~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~--~~CP~Cr~~ 141 (471)
-.|.||.+.+..-. .+-.|||+|+..|+..|+.... ..||.|+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik 54 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIK 54 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeec
Confidence 36999976655211 1234999999999999998432 489999943
No 62
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=95.24 E-value=0.017 Score=47.52 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=27.1
Q ss_pred ccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 113 MECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 113 ~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
=-|.|.|+.-||.+|+.. ...||+|++.+..
T Consensus 52 G~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred EecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 359999999999999984 6899999998764
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.015 Score=58.54 Aligned_cols=46 Identities=33% Similarity=0.829 Sum_probs=36.7
Q ss_pred ccccccc-ccccce---eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 98 QCPICLG-IIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 98 ~CpICl~-~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.||+|.. .+.+|- .+-+|+|+.|..|+...+..+...||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 5999974 444553 234899999999999999988899999988764
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.22 E-value=0.018 Score=43.17 Aligned_cols=41 Identities=24% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccccccc--ccccceeeccCC-----CcchHHHHHHHhhcC-CCCCCccc
Q 012092 98 QCPICLG--IIRKTRTVMECL-----HRFCRECIDKAMRLG-NNECPACR 139 (471)
Q Consensus 98 ~CpICl~--~~~~Pv~v~~Cg-----H~FC~~CI~~~l~~~-~~~CP~Cr 139 (471)
.|.||++ .-.++. +.||. |.|+..|+.+|+... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l-~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPL-VSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCee-EeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4889997 333565 58885 789999999999743 56899994
No 65
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.0048 Score=62.01 Aligned_cols=42 Identities=36% Similarity=0.785 Sum_probs=35.3
Q ss_pred cccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
...|.||++..++-++ ++|||. -|..|-.+ .+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvf-LeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVF-LECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEE-eecCcEEeehhhccc-----cccCchHHHHHH
Confidence 5789999999999996 999995 59999654 358999998764
No 66
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.018 Score=56.78 Aligned_cols=49 Identities=20% Similarity=0.378 Sum_probs=41.4
Q ss_pred cccccccccccccccee---eccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRT---VMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~---v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..+.||||.+.+.+.+. +-+|||+||..|+.+++. .-..||+|..++..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcc
Confidence 56899999999997543 348999999999999998 45789999998864
No 67
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=94.87 E-value=0.063 Score=55.61 Aligned_cols=114 Identities=25% Similarity=0.304 Sum_probs=70.4
Q ss_pred HHHHHhhccccc-CceeEEEEEeeccccCCCCCCCC-----------------ccccCCCcchHHHHHHHHhhhcccccc
Q 012092 347 LVDYLQSLEEKD-DQLDMHLVLVSLDEQRIPGLQQP-----------------YLCCRPTLSVRHLCQYVAHQTALQASE 408 (471)
Q Consensus 347 ~~~~l~~~~e~~-~e~~~~~~l~~~d~~~~p~l~~p-----------------yl~c~pt~sv~hl~~~va~~~~~~~~e 408 (471)
|+|+|-.-.=+- .---|-|.|+|.+....|.+..- =|...--|-|+-++.||+..+- ...+
T Consensus 198 l~d~ll~n~~p~ke~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~-~~~~ 276 (331)
T PF11816_consen 198 LADCLLHNRIPPKEPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLE-KTPE 276 (331)
T ss_pred HHHHhhcCCCCCCCCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhc-cCcc
Confidence 456665222121 22468899999996655666555 4889999999999999998872 1111
Q ss_pred eeeeeeecccccCCCCCCCCceeecCCCCcceeecccchhhhhccc-cCCCcceeehhhhhh
Q 012092 409 IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFLLLAYQKIL 469 (471)
Q Consensus 409 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl~~l~~~-~~~~~~l~l~y~~k~ 469 (471)
. .. .+.......+ ...++| .++| |+|--.-||+-|+.- |-..|+|+|-||+|.
T Consensus 277 ~--~~-~~~~~~~~~p--~e~lEl-~C~g--qvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 277 S--KT-PEMKPKKLKP--EEWLEL-LCNG--QVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred c--cC-ccccccCCCC--CceEEE-EeCC--eEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 0 00 0000000000 011111 1233 557778899999999 999999999999985
No 68
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.0079 Score=49.08 Aligned_cols=30 Identities=37% Similarity=0.810 Sum_probs=25.5
Q ss_pred cCCCcchHHHHHHHhhc--CCCCCCccccccc
Q 012092 114 ECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (471)
Q Consensus 114 ~CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~ 143 (471)
-|.|.|...||.+|+.. ....||+||+.+.
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 59999999999999973 3468999999775
No 69
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.78 E-value=0.012 Score=66.21 Aligned_cols=45 Identities=31% Similarity=0.781 Sum_probs=37.6
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCC-CCCCccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGN-NECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~-~~CP~Cr~~~~ 143 (471)
+.|.||++ ...++ ++.|+|.||..|+...+.... ..||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~-it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFF-ITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccce-eecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 89999999 55666 699999999999999887433 36999998765
No 70
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.67 E-value=0.028 Score=42.11 Aligned_cols=44 Identities=30% Similarity=0.800 Sum_probs=22.0
Q ss_pred ccccccccccc-eeec--cCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 99 CPICLGIIRKT-RTVM--ECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 99 CpICl~~~~~P-v~v~--~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
||+|.+.+... ..+. +||+.+|+.|....+......||.||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78898877421 1113 58899999999998875678999999864
No 71
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.43 E-value=0.028 Score=57.50 Aligned_cols=64 Identities=20% Similarity=0.437 Sum_probs=47.4
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccch
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c 165 (471)
-+-+.||||...+..|+.--.=||.-|..|-.+. ...||.||.++... ....+..+++.+...|
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~~----R~~amEkV~e~~~vpC 109 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGNI----RCRAMEKVAEAVLVPC 109 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCccccccccH----HHHHHHHHHHhceecc
Confidence 4568999999999999742333899999997653 46899999998732 3556677777665444
No 72
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.044 Score=56.05 Aligned_cols=47 Identities=21% Similarity=0.433 Sum_probs=38.9
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
+.-.||||+....+|..+.--|-+||..||..++. ..+.||+-..+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcc
Confidence 44579999999999986555699999999999998 578999866554
No 73
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=93.12 E-value=0.027 Score=56.98 Aligned_cols=49 Identities=29% Similarity=0.518 Sum_probs=37.9
Q ss_pred ccccccccccccc-cc-eeeccCCCcchHHHHHHHhhc----------------------CCCCCCccccccc
Q 012092 95 KEVQCPICLGIIR-KT-RTVMECLHRFCRECIDKAMRL----------------------GNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~-~P-v~v~~CgH~FC~~CI~~~l~~----------------------~~~~CP~Cr~~~~ 143 (471)
....|.||+-=|. .| +++++|-|.|+..|+.+++.. ....||+||..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4568999998776 34 778999999999999888731 1136999999875
No 74
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.99 E-value=0.044 Score=42.13 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=35.3
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
....|-.|...-...+ +++|||..|..|..-+ .-+.||.|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~-~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGT-VLPCGHLICDNCFPGE---RYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccc-cccccceeeccccChh---hccCCCCCCCcccC
Confidence 3456777877766666 4999999999997654 34689999998863
No 75
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.91 E-value=0.075 Score=47.94 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=41.5
Q ss_pred ccccccccccccccceeecc---CCCcchHHHHHHHhhc--CCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVME---CLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~---CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~~ 144 (471)
.-+.|-||.+...+..++.| ||-..|..|...+|+. -.+.||+|++.|.+
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 56899999999988877443 9999999999998873 35699999998864
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.85 E-value=0.042 Score=57.36 Aligned_cols=50 Identities=26% Similarity=0.654 Sum_probs=38.8
Q ss_pred Cccccccccccccc---cceeeccCCCcchHHHHHHHhhc-CCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRL-GNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~ 143 (471)
+-.+.|-.|.+.+- +-...+||.|.|+..|+.+++.+ +...||.||+-.+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 34688999998765 33345899999999999998863 4679999996443
No 77
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=92.78 E-value=0.073 Score=40.12 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=24.4
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhh----cCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR----LGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~Cr~~ 141 (471)
.+.|||....+..|+....|.|.-|.+= ..|+. .....||.|.++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 4789999999999999899999866542 33332 345789999863
No 78
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.071 Score=46.00 Aligned_cols=29 Identities=28% Similarity=0.589 Sum_probs=25.3
Q ss_pred cCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 114 ECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 114 ~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.|.|.|+.-||.+|++ ....||+|.+...
T Consensus 80 ~CNHaFH~hCisrWlk-tr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLK-TRNVCPLDNKEWV 108 (114)
T ss_pred ecchHHHHHHHHHHHh-hcCcCCCcCccee
Confidence 5999999999999999 4689999988653
No 79
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.47 E-value=0.052 Score=60.67 Aligned_cols=68 Identities=28% Similarity=0.740 Sum_probs=50.4
Q ss_pred hhccCccccccccccccccceeeccCCCcchHHHHHHHhh--cCCCCCCccccccccCCcCCccHHHHHHHH
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR--LGNNECPACRTHCASRRSLRDDLNYDALIA 159 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~--~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~ 159 (471)
+..+...+.|+||...+..|+. +.|.|.||..|+...+. .....||+|+..+. ++..+-.+....++.
T Consensus 15 i~~~~k~lEc~ic~~~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 15 INAMQKILECPICLEHVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSK 84 (684)
T ss_pred HHHHhhhccCCceeEEeeccch-hhhhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHH
Confidence 3445678899999999999985 99999999999977654 23568999997765 344544444444444
No 80
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.097 Score=54.88 Aligned_cols=49 Identities=16% Similarity=0.439 Sum_probs=39.3
Q ss_pred cCccccccccccccc---cceeeccCCCcchHHHHHHHhhcCC--CCCCcccccc
Q 012092 93 IRKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGN--NECPACRTHC 142 (471)
Q Consensus 93 l~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~--~~CP~Cr~~~ 142 (471)
+...|.|||=.+.-. .|+. +.|||+.|..-+.++.+.+. +.||.|-...
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~-L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMM-LICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCee-eeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 566789999665544 4665 99999999999999988776 8999997654
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.97 E-value=0.09 Score=54.04 Aligned_cols=46 Identities=26% Similarity=0.630 Sum_probs=33.0
Q ss_pred ccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 98 QCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 98 ~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.||+|++.+.. -.+-.+||-..|..|....-..-+..||.||....
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 39999987752 12224688888999987655544579999998765
No 82
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.16 E-value=0.12 Score=56.99 Aligned_cols=40 Identities=25% Similarity=0.712 Sum_probs=32.4
Q ss_pred cCccccccccccccc----cceeeccCCCcchHHHHHHHhhcCCCCCC
Q 012092 93 IRKEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMRLGNNECP 136 (471)
Q Consensus 93 l~~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP 136 (471)
+..-+.|+||+..|. .||+ +.|||+.|..|+..... ..||
T Consensus 8 w~~~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn---~scp 51 (861)
T KOG3161|consen 8 WVLLLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYN---ASCP 51 (861)
T ss_pred hHHHhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhh---ccCC
Confidence 345678999988776 6887 89999999999987754 4677
No 83
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.75 E-value=0.099 Score=51.46 Aligned_cols=48 Identities=29% Similarity=0.864 Sum_probs=36.0
Q ss_pred cccccccccc-cccccee---ec-cCCCcchHHHHHHHhhcCCCCCC--cccccc
Q 012092 95 KEVQCPICLG-IIRKTRT---VM-ECLHRFCRECIDKAMRLGNNECP--ACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~-~~~~Pv~---v~-~CgH~FC~~CI~~~l~~~~~~CP--~Cr~~~ 142 (471)
.+..||||.. .+-+|-. +- .|-|..|.+|+.+.+..+...|| -|.+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3458999984 3334431 12 49999999999999998889999 687644
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.60 E-value=0.12 Score=52.66 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=32.2
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
...|.-|-..+..--..++|.|+||..|...- ..+.||.|-..+.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---ccccCcCcccHHH
Confidence 45788887655543345899999999997532 3468999976654
No 85
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.29 Score=51.71 Aligned_cols=46 Identities=24% Similarity=0.596 Sum_probs=33.8
Q ss_pred cccccccccccccc--ceeeccCCCcchHHHHHHHhh----cC---CCCCCcccc
Q 012092 95 KEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMR----LG---NNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~----~~---~~~CP~Cr~ 140 (471)
..+.|.||++...- -+..+||+|.||..|+..++. .+ .-.||.|..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 45789999987763 333489999999999998875 12 236877654
No 86
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.64 E-value=0.27 Score=48.67 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=32.1
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhh
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
..+..--.|++|+..+.+|| |++=||.||+.||.+++-
T Consensus 38 DsiK~FdcCsLtLqPc~dPv-it~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPV-ITPDGYLFDREAILEYIL 75 (303)
T ss_pred cccCCcceeeeecccccCCc-cCCCCeeeeHHHHHHHHH
Confidence 34455568899999999999 599999999999998764
No 87
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.56 E-value=0.14 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.539 Sum_probs=26.2
Q ss_pred cCcccccccccccccc-ceeeccCCCcchHHHHH
Q 012092 93 IRKEVQCPICLGIIRK-TRTVMECLHRFCRECID 125 (471)
Q Consensus 93 l~~~l~CpICl~~~~~-Pv~v~~CgH~FC~~CI~ 125 (471)
+...-.|++|...|.. ++.+.||||.|+..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3456789999988874 44557999999999975
No 88
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.55 E-value=0.44 Score=46.66 Aligned_cols=47 Identities=21% Similarity=0.608 Sum_probs=37.5
Q ss_pred ccccccccccc--cceeeccCCCcchHHHHHHHhhc-------CCCCCCcccccccc
Q 012092 97 VQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRL-------GNNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~-------~~~~CP~Cr~~~~~ 144 (471)
-.|.+|...+. +.+. +-|-|.|+..|+..|... ....||.|...+.+
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 46999998887 5665 789999999999998752 23589999988764
No 89
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.14 E-value=0.12 Score=61.06 Aligned_cols=50 Identities=26% Similarity=0.680 Sum_probs=41.7
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
.+...+.|+||++++.+--.+..|||.||..|+..|+. ....||.|...+
T Consensus 1149 ~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~-~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1149 NLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLY-ASSRCPICKSIK 1198 (1394)
T ss_pred HhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHH-HhccCcchhhhh
Confidence 44556799999999996666789999999999999998 457899998544
No 90
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.14 E-value=0.27 Score=50.80 Aligned_cols=47 Identities=28% Similarity=0.699 Sum_probs=36.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh-cCCCCCCcccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~Cr~~~ 142 (471)
+...|.||.+-+.--. ++||+|..|..|..+.-. .....||.||...
T Consensus 60 en~~C~ICA~~~TYs~-~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 60 ENMNCQICAGSTTYSA-RYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccceeEEecCCceEEE-eccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 4568999998877655 599999999999876432 1357899999853
No 91
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.01 E-value=0.21 Score=56.80 Aligned_cols=42 Identities=21% Similarity=0.649 Sum_probs=36.1
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
.-.|..|...+.-|+.-..|||.|+..|+. .+...||.|+..
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccchh
Confidence 458999999999998668999999999998 256799999873
No 92
>PHA03096 p28-like protein; Provisional
Probab=88.55 E-value=0.24 Score=50.36 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=30.9
Q ss_pred cccccccccccc-ce------eeccCCCcchHHHHHHHhhcC--CCCCCcccc
Q 012092 97 VQCPICLGIIRK-TR------TVMECLHRFCRECIDKAMRLG--NNECPACRT 140 (471)
Q Consensus 97 l~CpICl~~~~~-Pv------~v~~CgH~FC~~CI~~~l~~~--~~~CP~Cr~ 140 (471)
-.|.||++.... +. .+..|.|.||..|+..|.... ...||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 679999986652 11 124799999999999998632 235666554
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=86.53 E-value=0.7 Score=33.71 Aligned_cols=40 Identities=30% Similarity=0.805 Sum_probs=24.0
Q ss_pred ccccccccccceeec--cCCCcchHHHHHHHhhcCCC-CCCcc
Q 012092 99 CPICLGIIRKTRTVM--ECLHRFCRECIDKAMRLGNN-ECPAC 138 (471)
Q Consensus 99 CpICl~~~~~Pv~v~--~CgH~FC~~CI~~~l~~~~~-~CP~C 138 (471)
|.+|.++...-+... .|+-.++..|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778988888776544 48889999999999984433 69987
No 94
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.91 E-value=0.75 Score=42.82 Aligned_cols=19 Identities=32% Similarity=0.844 Sum_probs=15.6
Q ss_pred cccccccccccccceeeccC
Q 012092 96 EVQCPICLGIIRKTRTVMEC 115 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~C 115 (471)
+.+|||||+...++|- +-|
T Consensus 2 d~~CpICme~PHNAVL-LlC 20 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVL-LLC 20 (162)
T ss_pred CccCceeccCCCceEE-EEe
Confidence 5689999999999995 543
No 95
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.67 E-value=0.75 Score=34.45 Aligned_cols=42 Identities=21% Similarity=0.698 Sum_probs=24.2
Q ss_pred cccccccccccceeeccCC-CcchHHHHHHHhhcCCCCCCccccccc
Q 012092 98 QCPICLGIIRKTRTVMECL-HRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 98 ~CpICl~~~~~Pv~v~~Cg-H~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.|.-|--..+. ++.|. |..|..|+..++. .+..||+|..+++
T Consensus 4 nCKsCWf~~k~---Li~C~dHYLCl~CLt~ml~-~s~~C~iC~~~LP 46 (50)
T PF03854_consen 4 NCKSCWFANKG---LIKCSDHYLCLNCLTLMLS-RSDRCPICGKPLP 46 (50)
T ss_dssp ---SS-S--SS---EEE-SS-EEEHHHHHHT-S-SSSEETTTTEE--
T ss_pred cChhhhhcCCC---eeeecchhHHHHHHHHHhc-cccCCCcccCcCc
Confidence 45555444333 35575 8899999999887 5689999999876
No 96
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=83.07 E-value=1.9 Score=49.39 Aligned_cols=47 Identities=32% Similarity=0.711 Sum_probs=36.6
Q ss_pred Cccccccccccccc--cce-eeccCCCcchHHHHHHHhhc------CCCCCCcccc
Q 012092 94 RKEVQCPICLGIIR--KTR-TVMECLHRFCRECIDKAMRL------GNNECPACRT 140 (471)
Q Consensus 94 ~~~l~CpICl~~~~--~Pv-~v~~CgH~FC~~CI~~~l~~------~~~~CP~Cr~ 140 (471)
...+.|.||.+.+. .|+ ....|-|+|...||..|.+. ..+.||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 45689999999887 343 22358899999999999862 3578999984
No 97
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=82.40 E-value=0.74 Score=46.64 Aligned_cols=44 Identities=30% Similarity=0.770 Sum_probs=35.7
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHHHhhcCCCCCCcccc
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~ 140 (471)
...||||.+.+. ..+.+++|||.....|+......+ ..||+|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 355999988665 333468999999999999988866 99999988
No 98
>PHA02862 5L protein; Provisional
Probab=81.82 E-value=1.1 Score=41.04 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=34.9
Q ss_pred ccccccccccccceeeccCCC-----cchHHHHHHHhhc-CCCCCCccccccccC
Q 012092 97 VQCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRL-GNNECPACRTHCASR 145 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~Cr~~~~~~ 145 (471)
-.|-||.+.-.+.+ .||.. ..+..|+.+|+.. ....||.|+.++..+
T Consensus 3 diCWIC~~~~~e~~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDERN--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCCc--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 36999998765443 56654 3699999999984 456999999987643
No 99
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=80.57 E-value=0.89 Score=41.25 Aligned_cols=34 Identities=26% Similarity=0.545 Sum_probs=26.9
Q ss_pred ccccccccccccc--ceeeccCC------CcchHHHHHHHhh
Q 012092 96 EVQCPICLGIIRK--TRTVMECL------HRFCRECIDKAMR 129 (471)
Q Consensus 96 ~l~CpICl~~~~~--Pv~v~~Cg------H~FC~~CI~~~l~ 129 (471)
...|.||++.+.+ -|..+.|+ |.||..|+.+|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 6889999998886 55456676 4599999999943
No 100
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=78.38 E-value=1.5 Score=49.42 Aligned_cols=70 Identities=16% Similarity=0.310 Sum_probs=49.6
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHh---hcCCCCCCccccccccCCcCCccHHHHHHHHHHcc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAM---RLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l---~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p 163 (471)
+...|.|||+...+.-|..-..|.|.-|..-..-.. +...+.||+|.+.+.. ..+..+..+.+++..+..
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~-e~l~iD~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF-EGLIIDGYFLNILQSCQA 375 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc-cchhhhHHHHHHHhhccC
Confidence 456799999998888777667788876655432111 1346799999998874 678888888877766543
No 101
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=76.69 E-value=2.6 Score=39.36 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=34.8
Q ss_pred ccccccccccccccceeeccCCC-----cchHHHHHHHhhc-CCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRL-GNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~Cr~~~~~ 144 (471)
....|-||.+--. +. ..||.. ..+..|+.+|+.. +...|+.|++++..
T Consensus 7 ~~~~CRIC~~~~~-~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-Cc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4457999987754 22 256554 3499999999984 45689999998754
No 102
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.29 E-value=1.3 Score=50.86 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=31.0
Q ss_pred ccCcccccccccccc-ccceeeccCCCcchHHHHHHHhh
Q 012092 92 DIRKEVQCPICLGII-RKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 92 ~l~~~l~CpICl~~~-~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.++..-.|.+|...+ ..|..+.+|||.|++.||.+...
T Consensus 813 v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred EecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 345567899998755 47888899999999999988764
No 103
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=75.79 E-value=1.7 Score=45.60 Aligned_cols=29 Identities=34% Similarity=0.890 Sum_probs=22.6
Q ss_pred CCCcchHHHHHHHhhc------------CCCCCCccccccc
Q 012092 115 CLHRFCRECIDKAMRL------------GNNECPACRTHCA 143 (471)
Q Consensus 115 CgH~FC~~CI~~~l~~------------~~~~CP~Cr~~~~ 143 (471)
|....|..|+.+|+.. +...||+||+.|-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 4556799999999852 3458999999875
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.62 E-value=1.9 Score=45.80 Aligned_cols=48 Identities=27% Similarity=0.785 Sum_probs=31.9
Q ss_pred cccccccccccccc---eeeccCCCcchHHHHHHHhhc-----CCCCCCc--cccccc
Q 012092 96 EVQCPICLGIIRKT---RTVMECLHRFCRECIDKAMRL-----GNNECPA--CRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~P---v~v~~CgH~FC~~CI~~~l~~-----~~~~CP~--Cr~~~~ 143 (471)
..+|.||..-...+ ..+..|+|.||..|+.+.+.. ....||. |...++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 56899999333322 124679999999999988762 3346765 554443
No 105
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=74.01 E-value=3.3 Score=50.14 Aligned_cols=48 Identities=23% Similarity=0.646 Sum_probs=33.6
Q ss_pred ccccccccc-ccc-cceeeccCCCcchHHHHHHHhhc---------CCCCCCccccccc
Q 012092 96 EVQCPICLG-IIR-KTRTVMECLHRFCRECIDKAMRL---------GNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~-~~~-~Pv~v~~CgH~FC~~CI~~~l~~---------~~~~CP~Cr~~~~ 143 (471)
+-.|-||+. .+. .|..-+.|+|.|+..|....+.. +-..||.|..++.
T Consensus 3486 DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3486 DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 346778863 222 44444899999999999876652 1238999998875
No 106
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.74 E-value=2.1 Score=43.96 Aligned_cols=50 Identities=20% Similarity=0.457 Sum_probs=37.7
Q ss_pred ccCccccccccccccc---cceeeccCCCcchHHHHHHHhhcC--CCCCCcccccc
Q 012092 92 DIRKEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLG--NNECPACRTHC 142 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~Cr~~~ 142 (471)
-+..-|.||+=.+.-. .|++ +.|||+.-..-+....+.+ .+.||.|-..-
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~~ 386 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEMS 386 (396)
T ss_pred cccceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcch
Confidence 3566789998766554 4665 9999999999888877654 46999996543
No 107
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=1.4 Score=44.70 Aligned_cols=35 Identities=23% Similarity=0.718 Sum_probs=29.9
Q ss_pred ccccccccccccccceeeccC----CCcchHHHHHHHhhc
Q 012092 95 KEVQCPICLGIIRKTRTVMEC----LHRFCRECIDKAMRL 130 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~C----gH~FC~~CI~~~l~~ 130 (471)
..+.|.+|.+.|.+..+ ..| .|.||..|-.+.++.
T Consensus 267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCce-eecCCCcccceecccCHHHHHh
Confidence 45899999999999887 666 589999999988873
No 108
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.39 E-value=2.3 Score=41.38 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=30.0
Q ss_pred ccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 99 CPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 99 CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
|-+|...-.. |.++||.|. +|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES-----LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc-----CccCCCCcChhh
Confidence 9999886665 556899995 89999643 357999998764
No 109
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.98 E-value=2.4 Score=43.10 Aligned_cols=29 Identities=31% Similarity=0.959 Sum_probs=23.0
Q ss_pred CCCcchHHHHHHHhh------------cCCCCCCccccccc
Q 012092 115 CLHRFCRECIDKAMR------------LGNNECPACRTHCA 143 (471)
Q Consensus 115 CgH~FC~~CI~~~l~------------~~~~~CP~Cr~~~~ 143 (471)
|....|..|+.+|+. .++..||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 556689999999974 24568999999875
No 110
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=69.99 E-value=11 Score=33.15 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=57.3
Q ss_pred eccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchh
Q 012092 369 SLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETL 448 (471)
Q Consensus 369 ~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl 448 (471)
......+|.|.+.-.-=..++||.++..+|-.++.+.+++- ||+--+.. ...-+.||
T Consensus 31 ~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~s-lfl~Vn~~----------------------~p~~~~~~ 87 (112)
T cd01611 31 RYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKA-LFLFVNNS----------------------LPPTSATM 87 (112)
T ss_pred EcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccce-EEEEECCc----------------------cCCchhHH
Confidence 34567899998877778999999999999999988876663 33321110 12235789
Q ss_pred hhhccc-cCCCcceeehhhhh
Q 012092 449 TGLQTQ-NLGHGFLLLAYQKI 468 (471)
Q Consensus 449 ~~l~~~-~~~~~~l~l~y~~k 468 (471)
++|+.. ....|.|.|.|..-
T Consensus 88 ~~lY~~~kd~DGfLyl~Ys~~ 108 (112)
T cd01611 88 SQLYEEHKDEDGFLYMTYSSE 108 (112)
T ss_pred HHHHHHhCCCCCEEEEEEecc
Confidence 999998 66799999999754
No 111
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=69.94 E-value=13 Score=31.24 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=58.5
Q ss_pred EEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccc-eeeeeeecccccCCCCCCCCceeecCCCCcceee
Q 012092 364 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (471)
Q Consensus 364 ~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (471)
.+.|.| ...+|-|.+.-.-=..+++|.++.+||-.++.+..++ |=+||-. . . -|+
T Consensus 3 ~i~~~~--~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn----~-f----------~p~------- 58 (87)
T cd01612 3 TIRFKP--IGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN----S-F----------APS------- 58 (87)
T ss_pred EEEEEE--CCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC----c-c----------CCC-------
Confidence 344555 5568999998888999999999999999999987766 4455421 0 0 122
Q ss_pred cccchhhhhccccCCCcceeehhhhh
Q 012092 443 NEQETLTGLQTQNLGHGFLLLAYQKI 468 (471)
Q Consensus 443 ~~~~tl~~l~~~~~~~~~l~l~y~~k 468 (471)
.+.|++.|+..-.-.|.|.|.|..-
T Consensus 59 -~d~~~g~LY~~~~~dGfLyi~Ys~~ 83 (87)
T cd01612 59 -PDENVGNLYRCFGTNGELIVSYCKT 83 (87)
T ss_pred -chhHHHHHHHhcCCCCEEEEEEeCc
Confidence 3468999999844689999999753
No 112
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=68.87 E-value=3.3 Score=30.71 Aligned_cols=39 Identities=31% Similarity=0.742 Sum_probs=23.8
Q ss_pred cccccccccc--ceeeccCCC-----cchHHHHHHHhhc-CCCCCCcc
Q 012092 99 CPICLGIIRK--TRTVMECLH-----RFCRECIDKAMRL-GNNECPAC 138 (471)
Q Consensus 99 CpICl~~~~~--Pv~v~~CgH-----~FC~~CI~~~l~~-~~~~CP~C 138 (471)
|-||++.-.. |. +.||.- ..+..|+.+|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~l-i~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6688765442 34 467653 4689999999973 45679887
No 113
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.91 E-value=4.3 Score=33.08 Aligned_cols=32 Identities=25% Similarity=0.720 Sum_probs=24.6
Q ss_pred CCcchHHHHHHHhhcCCCCCCccccccccCCcCCcc
Q 012092 116 LHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDD 151 (471)
Q Consensus 116 gH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n 151 (471)
.|+||..|....+. ..||.|...+. .+.+++.
T Consensus 28 EcTFCadCae~~l~---g~CPnCGGelv-~RP~RPa 59 (84)
T COG3813 28 ECTFCADCAENRLH---GLCPNCGGELV-ARPIRPA 59 (84)
T ss_pred eeehhHhHHHHhhc---CcCCCCCchhh-cCcCChH
Confidence 57999999987765 58999998887 3445544
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.85 E-value=3.4 Score=44.52 Aligned_cols=36 Identities=28% Similarity=0.612 Sum_probs=29.4
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhh
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.....|.||.+.+......+.|||.||..|+..++.
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 356789999998885233489999999999999886
No 115
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=65.79 E-value=5.8 Score=32.78 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=21.8
Q ss_pred cccccccccccc-----cce-eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIR-----KTR-TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~-----~Pv-~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.-.|.||.+.+- ++. .+..|+--.|+.|..--.+.++..||.|++.+.
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 457999988654 221 123678788999997666778899999998775
No 116
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.78 E-value=4.1 Score=38.77 Aligned_cols=48 Identities=25% Similarity=0.490 Sum_probs=32.9
Q ss_pred ccccccccccccc---ee---eccCCCcchHHHHHHHhhc-----C-----CCCCCcccccccc
Q 012092 97 VQCPICLGIIRKT---RT---VMECLHRFCRECIDKAMRL-----G-----NNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~~P---v~---v~~CgH~FC~~CI~~~l~~-----~-----~~~CP~Cr~~~~~ 144 (471)
..|-||.-+--+- -. -..||..|+.-|+..|++. . -..||.|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4577776543221 11 1369999999999999972 1 1379999998864
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.76 E-value=5.5 Score=39.83 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=38.3
Q ss_pred ccccccccccccccce---eeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccH
Q 012092 95 KEVQCPICLGIIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDL 152 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~ 152 (471)
..|.|||-.-.|..-. .+.+|||+|-..-+.+. ....|++|.+.+.....+..|.
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei---kas~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI---KASVCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHh---hhccccccCCcccccCeEeeCC
Confidence 5689999765554322 23689999998877665 3578999999987544444443
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.47 E-value=3.3 Score=43.96 Aligned_cols=41 Identities=34% Similarity=0.596 Sum_probs=28.8
Q ss_pred ccccccccccccc-----cceeeccCCCcchHHHHHHHhhcCCCCCCc
Q 012092 95 KEVQCPICLGIIR-----KTRTVMECLHRFCRECIDKAMRLGNNECPA 137 (471)
Q Consensus 95 ~~l~CpICl~~~~-----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~ 137 (471)
.-..||+|...+. +.+++. |||-||..|...|.. ....|..
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~-~~~~~~~ 350 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKT-HNGECYE 350 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhh-CCccccC
Confidence 3457888876654 566655 999999999988876 3344543
No 119
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=61.11 E-value=7.3 Score=44.58 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=31.7
Q ss_pred ccccccccccccccce---eec---cCCCcchHHHHHHHhhc-----CCCCCCcccccc
Q 012092 95 KEVQCPICLGIIRKTR---TVM---ECLHRFCRECIDKAMRL-----GNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---~v~---~CgH~FC~~CI~~~l~~-----~~~~CP~Cr~~~ 142 (471)
...+|+||..-|.+|+ .+. .|+|.||..||..|... ....|+.|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 3456777766665532 223 49999999999999862 234677876644
No 120
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=60.39 E-value=8.1 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.739 Sum_probs=14.7
Q ss_pred eeccCCCcchHHHHHHHhhcCCCCCCccc
Q 012092 111 TVMECLHRFCRECIDKAMRLGNNECPACR 139 (471)
Q Consensus 111 ~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr 139 (471)
....|++.||..|= -++....-.||-|.
T Consensus 23 ~C~~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 23 RCPKCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp --TTTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred ECCCCCCccccCcC-hhhhccccCCcCCC
Confidence 34579999999993 23334456899884
No 121
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=58.74 E-value=1.5 Score=35.44 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=22.9
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+.||.|...+.. . . +|.+|..|-..+.. ...||.|..++.
T Consensus 2 ~~CP~C~~~L~~-~---~-~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEW-Q---G-GHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEE-E---T-TEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CcCCCCCCccEE-e---C-CEEECcccccccee--cccCCCcccHHH
Confidence 579999987542 1 1 78889999876544 358999988764
No 122
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=56.72 E-value=9.4 Score=29.64 Aligned_cols=44 Identities=20% Similarity=0.616 Sum_probs=29.6
Q ss_pred cccccccccccce-eeccCC--CcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 98 QCPICLGIIRKTR-TVMECL--HRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 98 ~CpICl~~~~~Pv-~v~~Cg--H~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.|-.|...+.... -..-|. .+||..|....+. ..||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 4666766554211 113354 4799999998875 589999988763
No 123
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.36 E-value=7.2 Score=44.44 Aligned_cols=45 Identities=33% Similarity=0.738 Sum_probs=30.6
Q ss_pred ccccccccccc-cceeeccCCCcchHHHHHHHhhcCCCCCCc-ccccc
Q 012092 97 VQCPICLGIIR-KTRTVMECLHRFCRECIDKAMRLGNNECPA-CRTHC 142 (471)
Q Consensus 97 l~CpICl~~~~-~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~-Cr~~~ 142 (471)
+.|.||.-... ....+..|+|..+..|...|+..+ -.||. |...+
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~g-d~CpsGCGC~C 1075 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTG-DVCPSGCGCHC 1075 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcC-CcCCCCCCcCc
Confidence 45666654433 223346799999999999999954 58886 55544
No 124
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.21 E-value=6 Score=38.64 Aligned_cols=45 Identities=20% Similarity=0.561 Sum_probs=37.1
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
..|.+|..+...-+.+-.|+-.+...|+..++.. ...||.|.--+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w 226 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLW 226 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhccc
Confidence 5899999998877766678878899999999984 68999996544
No 125
>PLN02189 cellulose synthase
Probab=56.10 E-value=7.4 Score=46.01 Aligned_cols=47 Identities=32% Similarity=0.674 Sum_probs=35.1
Q ss_pred ccccccccccc-----cce-eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KTR-TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~Pv-~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..|.||.+.+- ++. .+-.|+--.|+.|..--.+.++..||.|++.+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998754 222 234588889999995545568889999999875
No 126
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=56.02 E-value=18 Score=30.58 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=49.6
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccc-eeeeeeecccccCCCCCCCCceeecCCCCccee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASE-IEIYLVKELHSKINLPSSSNSLMIDPCKDKLQV 441 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (471)
|.+.|.+. ...|-|.+.-....++-+|.++.+||-.++.++..| |=+||-. . ..|+.
T Consensus 2 V~v~fk~i--G~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~----s-----------FaPsp----- 59 (87)
T PF04110_consen 2 VTVRFKAI--GSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN----S-----------FAPSP----- 59 (87)
T ss_dssp EEEEEEEE--TT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE----E-----------E---T-----
T ss_pred EEEEEEec--CCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC----c-----------cCCCc-----
Confidence 34555553 357999999999999999999999999999985433 3345421 1 12333
Q ss_pred ecccchhhhhccccCCCcceeehhhhhh
Q 012092 442 LNEQETLTGLQTQNLGHGFLLLAYQKIL 469 (471)
Q Consensus 442 l~~~~tl~~l~~~~~~~~~l~l~y~~k~ 469 (471)
+++++.|+.--..+|.|+|.|....
T Consensus 60 ---De~vg~L~~~f~~~~~Liv~Ys~t~ 84 (87)
T PF04110_consen 60 ---DETVGDLYRCFGTNGELIVSYSKTP 84 (87)
T ss_dssp ---TSBHHHHHHHH-BTTBEEEEEESSS
T ss_pred ---hhHHHHHHHHhCCCCEEEEEEeccc
Confidence 4688889888448999999997543
No 127
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=54.52 E-value=34 Score=29.73 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=53.8
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (471)
|-+++=......+|.|.+.-.--..++||-++...|-.++.+.+++- ||+--+. ..+
T Consensus 17 IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~a-lfl~Vn~----------------------~lp 73 (104)
T PF02991_consen 17 IPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQA-LFLFVNN----------------------TLP 73 (104)
T ss_dssp EEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS--EEEEBTT----------------------BES
T ss_pred cEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCce-EEEEEcC----------------------ccc
Confidence 44444456677799999885557899999999999999998877653 4443111 234
Q ss_pred cccchhhhhccc-cCCCcceeehhh
Q 012092 443 NEQETLTGLQTQ-NLGHGFLLLAYQ 466 (471)
Q Consensus 443 ~~~~tl~~l~~~-~~~~~~l~l~y~ 466 (471)
..+.||++|+.. -.--|.|-|.|.
T Consensus 74 ~~s~tm~elY~~~kdeDGFLY~~Ys 98 (104)
T PF02991_consen 74 STSSTMGELYEKYKDEDGFLYMTYS 98 (104)
T ss_dssp STTSBHHHHHHHHB-TTSSEEEEEE
T ss_pred chhhHHHHHHHHhCCCCCeEEEEec
Confidence 456899999998 778999999886
No 128
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=53.03 E-value=7.2 Score=25.51 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=11.2
Q ss_pred ccccccccccc-ceeeccCCCcc
Q 012092 98 QCPICLGIIRK-TRTVMECLHRF 119 (471)
Q Consensus 98 ~CpICl~~~~~-Pv~v~~CgH~F 119 (471)
.||-|...+.. ......|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 47777665542 22223466665
No 129
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=51.90 E-value=9.6 Score=45.27 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=34.9
Q ss_pred ccccccccccc-----cc-eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.|.||.+.+- +| |.+-.|+--.|+.|..==.+.++..||.|++.+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 47999998754 22 2335788889999985444568889999999875
No 130
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=50.27 E-value=2.3 Score=37.53 Aligned_cols=47 Identities=23% Similarity=0.545 Sum_probs=30.4
Q ss_pred ccccccccccccc----cceeeccCCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 95 KEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
....|.+|...|. ....+..|.|.+|..|-...-......|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 3468999987543 3455678999999999654222334578888763
No 131
>PLN02436 cellulose synthase A
Probab=48.96 E-value=11 Score=44.82 Aligned_cols=47 Identities=34% Similarity=0.751 Sum_probs=35.0
Q ss_pred ccccccccccc-----cce-eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KTR-TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~Pv-~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.|.||.+.+- ++. .+-.|+--.|+.|..--.+.++..||.|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998753 222 224588889999996545567889999999875
No 132
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=48.59 E-value=4.4 Score=41.07 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=21.5
Q ss_pred ccccccccccccceeecc----CCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 97 VQCPICLGIIRKTRTVME----CLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~----CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
-.||||.....-.+..-. -.|.+|..|-..|-- ....||.|...
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 589999987664442111 235689999999866 35689999764
No 133
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=47.03 E-value=16 Score=39.36 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=12.9
Q ss_pred CCCCceecChhhHHHhhhcCCC
Q 012092 16 NNNNHIIITPSEVVEAVLDDDG 37 (471)
Q Consensus 16 n~~~~i~~~~se~~e~vleed~ 37 (471)
...|.|.-...|+-|.+++|++
T Consensus 33 kKE~~IRkLgeEaEEEA~~EEd 54 (458)
T PF10446_consen 33 KKENAIRKLGEEAEEEAEEEED 54 (458)
T ss_pred HHHHHHhhhhHHHHHHHhhccc
Confidence 3445666666666666666553
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=44.34 E-value=12 Score=29.91 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=9.0
Q ss_pred cchHHHHHHHhh
Q 012092 118 RFCRECIDKAMR 129 (471)
Q Consensus 118 ~FC~~CI~~~l~ 129 (471)
.||+.|+.+|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999986
No 135
>PLN02400 cellulose synthase
Probab=43.41 E-value=12 Score=44.44 Aligned_cols=47 Identities=28% Similarity=0.648 Sum_probs=34.5
Q ss_pred ccccccccccc-----cc-eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.|.||.+.+- +| |.+-.|+--.|+.|..==.+.++..||.|++...
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 47999998754 22 2235688889999985334467889999999875
No 136
>PLN02195 cellulose synthase A
Probab=42.77 E-value=17 Score=42.89 Aligned_cols=47 Identities=19% Similarity=0.551 Sum_probs=34.5
Q ss_pred ccccccccccc-----cc-eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.|.||.+.+- +| |.+-.|+--.|+.|..==-+.++..||.|++...
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 37999998544 22 2335788889999985434467889999998874
No 137
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=42.62 E-value=15 Score=38.21 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=18.5
Q ss_pred ccccccccc--cceeeccCCCcchHHHHHHHhhcCCCCCCccc
Q 012092 99 CPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACR 139 (471)
Q Consensus 99 CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr 139 (471)
|-.|.+-+. ..+++-.|.++||..|=. ++...--.||-|.
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesLh~CpgCe 374 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESLHNCPGCE 374 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchH-HHHhhhhcCCCcC
Confidence 555533222 122334566666666632 2222233566664
No 138
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=42.08 E-value=13 Score=37.42 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=37.3
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhc-CCCCCCccc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPACR 139 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~Cr 139 (471)
.-.++|||-...+.+|+.-..|||.|=+.-|..++.. ....||+-.
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 3468999999999999976899999999999988763 245788733
No 139
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.01 E-value=8.9 Score=38.83 Aligned_cols=55 Identities=20% Similarity=0.456 Sum_probs=35.4
Q ss_pred Ccccccccccccccc--------ceeeccCCCcchHHHHH-HHhhc---------CCCCCCccccccccCCcC
Q 012092 94 RKEVQCPICLGIIRK--------TRTVMECLHRFCRECID-KAMRL---------GNNECPACRTHCASRRSL 148 (471)
Q Consensus 94 ~~~l~CpICl~~~~~--------Pv~v~~CgH~FC~~CI~-~~l~~---------~~~~CP~Cr~~~~~~~~l 148 (471)
...+.|++|...+.. -+-.++|...||..-+. .||-+ ..+.||.|.+.|..+..|
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL 231 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL 231 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHH
Confidence 345788888877662 11125777777777664 46642 346899999998864333
No 140
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=41.76 E-value=15 Score=31.29 Aligned_cols=37 Identities=22% Similarity=0.622 Sum_probs=27.6
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.-.|.||...+.. =||.||..|... ...|.+|.+.+.
T Consensus 44 ~~~C~~CK~~v~q------~g~~YCq~CAYk-----kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQ------PGAKYCQTCAYK-----KGICAMCGKKIL 80 (90)
T ss_pred Ccccccccccccc------CCCccChhhhcc-----cCcccccCCeec
Confidence 3479999875433 288899999653 468999998874
No 141
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=40.68 E-value=21 Score=41.18 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=35.9
Q ss_pred ccccccccc--ccccceeeccCCCc-----chHHHHHHHhhc-CCCCCCcccccccc
Q 012092 96 EVQCPICLG--IIRKTRTVMECLHR-----FCRECIDKAMRL-GNNECPACRTHCAS 144 (471)
Q Consensus 96 ~l~CpICl~--~~~~Pv~v~~CgH~-----FC~~CI~~~l~~-~~~~CP~Cr~~~~~ 144 (471)
...|.||.. .-.+|.. -||..+ .+..|+.+|+.- +..+|-.|..++.-
T Consensus 12 ~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred chhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 357999864 4447775 778764 699999999983 45689999887643
No 142
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.06 E-value=19 Score=42.69 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=35.0
Q ss_pred ccccccccccc-----cc-eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR-----KT-RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~-----~P-v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..|.||.+..- +| |.+-.|+--.|+.|..-=.+.++..||.|++...
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 47999998754 22 2234688889999995445567889999999875
No 143
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=38.28 E-value=14 Score=35.85 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=0.0
Q ss_pred CCCCchhHHHhhhhccCccccccccccccc------cceeeccCCCcchHHHH
Q 012092 78 GDGEKDEFVIVKLSDIRKEVQCPICLGIIR------KTRTVMECLHRFCRECI 124 (471)
Q Consensus 78 ~~~~~~e~~~~~~~~l~~~l~CpICl~~~~------~Pv~v~~CgH~FC~~CI 124 (471)
.+|.+-.+..-++..|...+.|-||..... +-.+ ..-.|.|...|+
T Consensus 83 ~DGkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF-~E~rH~~GlrcL 134 (196)
T PF11931_consen 83 WDGKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKHF-QEWRHAYGLRCL 134 (196)
T ss_dssp -----------------------------------------------------
T ss_pred CCCCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHhc-ChhHHHccChhc
Confidence 456666777888889999999999998655 2223 456788888887
No 144
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.41 E-value=7 Score=39.45 Aligned_cols=44 Identities=32% Similarity=0.658 Sum_probs=34.6
Q ss_pred ccccccccccc------cceeecc--------CCCcchHHHHHHHhhcCCCCCCccccc
Q 012092 97 VQCPICLGIIR------KTRTVME--------CLHRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 97 l~CpICl~~~~------~Pv~v~~--------CgH~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
..|.||...+. .|. ++. |||+.|..|+...+......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~-vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPL-VLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchh-HHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46899987776 244 355 999999999999877555799999874
No 145
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.51 E-value=27 Score=35.18 Aligned_cols=49 Identities=24% Similarity=0.507 Sum_probs=33.0
Q ss_pred ccccccccccccccce---eeccCC-----CcchHHHHHHHhhcC-------CCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTR---TVMECL-----HRFCRECIDKAMRLG-------NNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---~v~~Cg-----H~FC~~CI~~~l~~~-------~~~CP~Cr~~~~ 143 (471)
.+..|=||+..-.+-. -|-||. |-.+..|+..|+.+. .-.||.|++...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4568999987654321 234554 447999999999732 127999998654
No 146
>PF14353 CpXC: CpXC protein
Probab=36.10 E-value=30 Score=30.52 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=25.6
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhc--CCCCCCccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~ 143 (471)
++||-|...|.-.+- +.-.-..=..=....+.. ....||.|...+.
T Consensus 2 itCP~C~~~~~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVW-TSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 679999988875542 211111122223333331 2358999998765
No 147
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=35.52 E-value=12 Score=29.23 Aligned_cols=34 Identities=18% Similarity=0.507 Sum_probs=17.1
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHHh
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAM 128 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l 128 (471)
+.-.|.+|...|. .....-.||+.||..|....+
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 3467999998774 233345799999999976544
No 148
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.41 E-value=24 Score=41.81 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=32.7
Q ss_pred ccccccccccccccceeeccCCC-----cchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLH-----RFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH-----~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
....|+-|........ +..||. .||..|-.. . ....||.|......
T Consensus 625 g~RfCpsCG~~t~~fr-CP~CG~~Te~i~fCP~CG~~--~-~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRR-CPFCGTHTEPVYRCPRCGIE--V-EEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCccc-CCCCCCCCCcceeCccccCc--C-CCCcCCCCCCCCCc
Confidence 3468999998765443 467985 499999332 2 34679999988764
No 149
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=35.15 E-value=11 Score=38.90 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=30.5
Q ss_pred cccccccccccccceeec---cCC--CcchHHHHHHHhhcCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVM---ECL--HRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~---~Cg--H~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
.-.||||.....-.+... .=| +.+|..|-..|-- ....||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 348999998765333111 123 4579999999865 45789999863
No 150
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=34.67 E-value=42 Score=26.14 Aligned_cols=31 Identities=6% Similarity=0.241 Sum_probs=27.4
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
|...|+.||..|-+.|+.++..+++++-++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~ 45 (76)
T cd01803 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_pred EEECCcCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 6778999999999999999999998887664
No 151
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.48 E-value=23 Score=26.64 Aligned_cols=38 Identities=24% Similarity=0.584 Sum_probs=22.2
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhh-cCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-LGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~Cr~~ 141 (471)
.+.||.|...|.... ++.-|...-.. .....||+|...
T Consensus 2 ~f~CP~C~~~~~~~~--------L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS--------LVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH--------HHHHHHhHCcCCCCCccCCCchhh
Confidence 578999999544322 33334433322 134589999864
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.31 E-value=39 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.802 Sum_probs=21.1
Q ss_pred CCcchHHHHHHHhh--------cCCCCCCccccccc
Q 012092 116 LHRFCRECIDKAMR--------LGNNECPACRTHCA 143 (471)
Q Consensus 116 gH~FC~~CI~~~l~--------~~~~~CP~Cr~~~~ 143 (471)
.-.||..||...+. .....||.||..+.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeC
Confidence 66799999877653 34578999998654
No 153
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=33.22 E-value=29 Score=36.12 Aligned_cols=46 Identities=28% Similarity=0.683 Sum_probs=33.9
Q ss_pred ccccccccccc---cceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
-.||||..... ....-.+|++..|..|+..... +...||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccc-cCCCCCccCCccc
Confidence 57999998663 2221135888889999888766 6789999997654
No 154
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=32.95 E-value=33 Score=26.51 Aligned_cols=42 Identities=26% Similarity=0.639 Sum_probs=29.3
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHHHhhcCCCCCCc--ccccc
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPA--CRTHC 142 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~--Cr~~~ 142 (471)
.-.|++|.+.|. +-|....||-.+++.|... ...|-. |...+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~-----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK-----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh-----CCceEeccCCCCc
Confidence 357999999994 4455568999999999654 245654 55443
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=32.56 E-value=46 Score=25.54 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=27.2
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
|.+.|+-||..|-+.|+.++.++++++-++.
T Consensus 10 ~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~ 40 (69)
T PF00240_consen 10 LEVDPDDTVADLKQKIAEETGIPPEQQRLIY 40 (69)
T ss_dssp EEEETTSBHHHHHHHHHHHHTSTGGGEEEEE
T ss_pred EEECCCCCHHHhhhhcccccccccccceeee
Confidence 5677999999999999999999999986654
No 157
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=32.51 E-value=53 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.254 Sum_probs=33.3
Q ss_pred EEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 365 LVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 365 ~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
+.+..+++++++ +...|+.||..|-+.|+.++.+++.+.-++
T Consensus 3 i~v~~~~g~~~~------~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~ 44 (76)
T cd01806 3 IKVKTLTGKEIE------IDIEPTDKVERIKERVEEKEGIPPQQQRLI 44 (76)
T ss_pred EEEEeCCCCEEE------EEECCCCCHHHHHHHHhHhhCCChhhEEEE
Confidence 444556677655 567899999999999999999999887655
No 158
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.04 E-value=27 Score=37.83 Aligned_cols=66 Identities=20% Similarity=0.494 Sum_probs=42.4
Q ss_pred hhccCcccccccc-ccccccceee-ccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHH
Q 012092 90 LSDIRKEVQCPIC-LGIIRKTRTV-MECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDAL 157 (471)
Q Consensus 90 ~~~l~~~l~CpIC-l~~~~~Pv~v-~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~l 157 (471)
.-.+.+.++|++| ...|.+...+ -.|...||-.||...+. ...|+.|.+.-.....+.+...+...
T Consensus 213 v~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~--~~~~~~c~~~~~~~~~~~~p~~~r~~ 280 (448)
T KOG0314|consen 213 VGELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALI--SKSMCVCGASNVLADDLLPPKTLRDT 280 (448)
T ss_pred hccCCccccCceecchhhHHHHHhhhhhcccCCccccccccc--cccCCcchhhcccccccCCchhhHHH
Confidence 3456788999999 7788877643 35788999999988765 24566665533222334444444433
No 159
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.03 E-value=31 Score=30.51 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=29.0
Q ss_pred ccccccccccccc-------------eeeccCCCcchHHHHHHHhhcCCCCCCccc
Q 012092 97 VQCPICLGIIRKT-------------RTVMECLHRFCRECIDKAMRLGNNECPACR 139 (471)
Q Consensus 97 l~CpICl~~~~~P-------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr 139 (471)
..|--|+..|..+ .....|.+.||..|=.-+- .....||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiH-e~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVH-ESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhh-hhccCCcCCC
Confidence 4588898887654 2246799999999944332 2445799885
No 160
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=31.85 E-value=25 Score=26.22 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=22.2
Q ss_pred cccccccccc---cceeeccCCCcchHHHHHHHhh
Q 012092 98 QCPICLGIIR---KTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 98 ~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.|.+|...|. .......||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5888866554 3334467999999999875543
No 161
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=15 Score=37.81 Aligned_cols=48 Identities=29% Similarity=0.791 Sum_probs=39.8
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..-.|-||...+.-|...-.|+|.||..|...|... ..-||.|+..+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~-~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM-GNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh-hhccchhhcCcC
Confidence 456899999999999876679999999999888773 467999988664
No 162
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=30.06 E-value=21 Score=39.89 Aligned_cols=42 Identities=31% Similarity=0.739 Sum_probs=26.0
Q ss_pred ccccccccccc-cc------cceeeccCCCcchHHHHHHHhhcCCCCCCcccc
Q 012092 95 KEVQCPICLGI-IR------KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~-~~------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~ 140 (471)
..+.|.||..- +. ....+..|++.|+..|+.. ....||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCchHH
Confidence 45677777421 11 2223456999999999765 3445999943
No 163
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=30.06 E-value=33 Score=34.16 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=34.8
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhc-CCCCCCc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPA 137 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~ 137 (471)
.-+.+|||-+.....|+.-..|.|.|=..-|..+++. ....||.
T Consensus 187 ~~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 187 LLSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred hhcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecch
Confidence 3467999988888888865789999999999998872 3446774
No 164
>PF12773 DZR: Double zinc ribbon
Probab=29.10 E-value=38 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.637 Sum_probs=14.8
Q ss_pred cchHHHHHHHh--hcCCCCCCccccccc
Q 012092 118 RFCRECIDKAM--RLGNNECPACRTHCA 143 (471)
Q Consensus 118 ~FC~~CI~~~l--~~~~~~CP~Cr~~~~ 143 (471)
.||..|=..+. ......||.|...+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 36666654444 223456888877654
No 165
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.34 E-value=37 Score=25.56 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=6.3
Q ss_pred CCCCcccccccc
Q 012092 133 NECPACRTHCAS 144 (471)
Q Consensus 133 ~~CP~Cr~~~~~ 144 (471)
..||+|..+|..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 389999988863
No 166
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.08 E-value=22 Score=36.78 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccccccccccccccceeec--cCC--CcchHHHHHHHhhcCCCCCCcccc
Q 012092 95 KEVQCPICLGIIRKTRTVM--ECL--HRFCRECIDKAMRLGNNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~--~Cg--H~FC~~CI~~~l~~~~~~CP~Cr~ 140 (471)
..-.||||.....-.+... .=| +.+|..|-..|-- ....||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-VRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-cCccCCCCCC
Confidence 4578999998765333111 224 3479999998865 4578999986
No 167
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=29 Score=39.59 Aligned_cols=51 Identities=25% Similarity=0.483 Sum_probs=36.4
Q ss_pred Cccccccccccccccce---------eeccCCCcc--------------------hHHHHHHHhhc-------CCCCCCc
Q 012092 94 RKEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPA 137 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 137 (471)
.+.-+|+-|+..+.+|- .++.||.+| |..|-.++-.. ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 35568999998777653 346788887 99999877541 2358999
Q ss_pred ccccccc
Q 012092 138 CRTHCAS 144 (471)
Q Consensus 138 Cr~~~~~ 144 (471)
|.-.+..
T Consensus 179 CGP~~~l 185 (750)
T COG0068 179 CGPHLFL 185 (750)
T ss_pred cCCCeEE
Confidence 9876543
No 169
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=26.74 E-value=16 Score=31.34 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=14.2
Q ss_pred ccccccccccc--cceeeccC--CCcchHHHHHHHhh---cCCCCCCcccccccc
Q 012092 97 VQCPICLGIIR--KTRTVMEC--LHRFCRECIDKAMR---LGNNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~C--gH~FC~~CI~~~l~---~~~~~CP~Cr~~~~~ 144 (471)
-.|+||...+. ++.. ..| ||.| ..|....+. .....|++|...+..
T Consensus 15 E~C~~C~~~i~~~~~~~-~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDE-AQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------SSE-EE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCcCE-eECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 47999998653 5442 445 7887 334444432 234689999987654
No 170
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.67 E-value=37 Score=35.16 Aligned_cols=47 Identities=4% Similarity=-0.138 Sum_probs=35.3
Q ss_pred ccCccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
.+-..+.|-+|..-+...+ ..+|+|. ||..|.... -...||+|....
T Consensus 339 ~~~s~~~~~~~~~~~~st~-~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 339 GLMSSLKGTSAGFGLLSTI-WSGGNMNLSPGSLASAS---ASPTSSTCDHND 386 (394)
T ss_pred cchhhcccccccCceeeeE-eecCCcccChhhhhhcc---cCCccccccccc
Confidence 3445678999988777666 4899995 999998733 347999997654
No 171
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=25.72 E-value=39 Score=29.64 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=10.5
Q ss_pred CCCCCCcccccccc
Q 012092 131 GNNECPACRTHCAS 144 (471)
Q Consensus 131 ~~~~CP~Cr~~~~~ 144 (471)
....||.|.+.+..
T Consensus 25 ~PivCP~CG~~~~~ 38 (108)
T PF09538_consen 25 DPIVCPKCGTEFPP 38 (108)
T ss_pred CCccCCCCCCccCc
Confidence 44579999988763
No 172
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=25.57 E-value=13 Score=28.10 Aligned_cols=31 Identities=35% Similarity=0.612 Sum_probs=18.2
Q ss_pred ccccc--ccccccc-----c--eeeccCCCcchHHHHHHH
Q 012092 97 VQCPI--CLGIIRK-----T--RTVMECLHRFCRECIDKA 127 (471)
Q Consensus 97 l~CpI--Cl~~~~~-----P--v~v~~CgH~FC~~CI~~~ 127 (471)
..||- |..++.. . ++...|++.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47877 8877762 2 444459999999997766
No 173
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=46 Score=37.94 Aligned_cols=44 Identities=30% Similarity=0.628 Sum_probs=33.3
Q ss_pred cccccccccccceeeccCCC-cchHHHHHHHhhc-C----CCCCCcccccc
Q 012092 98 QCPICLGIIRKTRTVMECLH-RFCRECIDKAMRL-G----NNECPACRTHC 142 (471)
Q Consensus 98 ~CpICl~~~~~Pv~v~~CgH-~FC~~CI~~~l~~-~----~~~CP~Cr~~~ 142 (471)
.|+||-.-+.-+.. -.||| ..|..|..+.... . ...||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~-~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGR-GSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCcccccc-ccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 49999887776664 78999 8999999876532 2 45789998844
No 174
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=24.91 E-value=2e+02 Score=25.56 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=61.8
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccce-eeeeeecccccCCCCCCCCceeecCCCC
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEI-EIYLVKELHSKINLPSSSNSLMIDPCKD 437 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (471)
.+++|+|.- .-.+|-|.+--..=-||-||.-+--||-.++.|++-+- =+||- +. + .|+.
T Consensus 29 ~kV~i~l~a----iG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN----~s-F----------APsP- 88 (116)
T KOG3439|consen 29 RKVQIRLRA----IGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVN----NS-F----------APSP- 88 (116)
T ss_pred ceEEEEEec----cCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEc----Cc-c----------CCCc-
Confidence 455665554 45678899999999999999999999999999988664 24442 11 1 2333
Q ss_pred cceeecccchhhhhccccCCCcceeehhhhhh
Q 012092 438 KLQVLNEQETLTGLQTQNLGHGFLLLAYQKIL 469 (471)
Q Consensus 438 ~~~~l~~~~tl~~l~~~~~~~~~l~l~y~~k~ 469 (471)
+++++.|+..-...|+|+|.|-.-.
T Consensus 89 -------Dq~v~~Ly~cf~~d~~Lvl~Yc~s~ 113 (116)
T KOG3439|consen 89 -------DQIVGNLYECFGTDGKLVLNYCISV 113 (116)
T ss_pred -------hhHHHHHHHhcCCCCEEEEEEeeec
Confidence 3578888888777899999997543
No 175
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=24.67 E-value=25 Score=30.33 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.4
Q ss_pred HHHHHH
Q 012092 122 ECIDKA 127 (471)
Q Consensus 122 ~CI~~~ 127 (471)
.|+.++
T Consensus 54 ~~v~rY 59 (101)
T PF09026_consen 54 TMVKRY 59 (101)
T ss_dssp HHHHHH
T ss_pred chHhhh
Confidence 344443
No 176
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=24.59 E-value=31 Score=37.86 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=27.8
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhh-----------cCCCCCCccccccc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR-----------LGNNECPACRTHCA 143 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~-----------~~~~~CP~Cr~~~~ 143 (471)
|..-+.|..|..+-..--....=--.||..|+...-. ..-+.||.|...+.
T Consensus 2 l~~L~fC~~C~~irc~~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~ 63 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCPRCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLS 63 (483)
T ss_pred cccceecccccccCChhhcccccceeECccccccCChhhheeccceeccccccCCCCCCcce
Confidence 3456778888775432111012223588888754421 02257899987765
No 177
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.01 E-value=67 Score=37.27 Aligned_cols=9 Identities=22% Similarity=0.556 Sum_probs=3.6
Q ss_pred HHHHhHHHH
Q 012092 189 SIAQTFQRQ 197 (471)
Q Consensus 189 hl~~~~~r~ 197 (471)
.|++.|+..
T Consensus 740 ~La~~Fk~r 748 (784)
T PF04931_consen 740 QLAAIFKER 748 (784)
T ss_pred HHHHHHHHH
Confidence 344444333
No 178
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=23.84 E-value=58 Score=31.42 Aligned_cols=41 Identities=32% Similarity=0.688 Sum_probs=27.4
Q ss_pred Cccccccccccc-cc------cceeeccCCCcchHHHHHHHhhcCCCCCCcccc
Q 012092 94 RKEVQCPICLGI-IR------KTRTVMECLHRFCRECIDKAMRLGNNECPACRT 140 (471)
Q Consensus 94 ~~~l~CpICl~~-~~------~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~ 140 (471)
...+.|.||... +. ..+.+..|+..|+..|... ..||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC------CCCCCcHh
Confidence 356788899741 11 2233357999999999752 56999954
No 179
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.67 E-value=36 Score=34.13 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=33.6
Q ss_pred ccccccccccccc----ceeeccCCC-----cchHHHHHHHhh-cCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRK----TRTVMECLH-----RFCRECIDKAMR-LGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~----Pv~v~~CgH-----~FC~~CI~~~l~-~~~~~CP~Cr~~~~ 143 (471)
...|-||...... +. +.+|.. ..++.|+..|+. .+...|..|...+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l-~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLL-ISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEeccccccccccc-ccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3579999885432 33 356643 368999999987 35679999988664
No 180
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=23.64 E-value=37 Score=39.09 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=35.5
Q ss_pred ccccccccccccccce---------eeccCCCcc--------------------hHHHHHHHhhc-------CCCCCCcc
Q 012092 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (471)
+--.|+-|+..+.+|. .++.||..| |..|..++... ....||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 4557999988777653 346788776 99999997542 13489999
Q ss_pred ccccc
Q 012092 139 RTHCA 143 (471)
Q Consensus 139 r~~~~ 143 (471)
.-.+.
T Consensus 147 gp~l~ 151 (711)
T TIGR00143 147 GPQLN 151 (711)
T ss_pred CcEEE
Confidence 87664
No 181
>KOG3663 consensus Nuclear factor I [Transcription]
Probab=23.46 E-value=85 Score=33.69 Aligned_cols=56 Identities=30% Similarity=0.544 Sum_probs=39.3
Q ss_pred HHHHhhcccccCceeEEEEEe----e---ccccCC---CCCCCCccccCC---CcchHHHHHHHHhhhcc
Q 012092 348 VDYLQSLEEKDDQLDMHLVLV----S---LDEQRI---PGLQQPYLCCRP---TLSVRHLCQYVAHQTAL 404 (471)
Q Consensus 348 ~~~l~~~~e~~~e~~~~~~l~----~---~d~~~~---p~l~~pyl~c~p---t~sv~hl~~~va~~~~~ 404 (471)
+|+||.+|-- =.|||-.+++ | -|++++ |-+-.|-||-.| ++|||-|==|||-++.-
T Consensus 117 IDCLRQADKV-WRLDLVmVILFKgIPLESTDGERL~ksp~C~hP~LCVqPhHi~VsVkeLDlylAyfv~~ 185 (518)
T KOG3663|consen 117 IDCLRQADKV-WRLDLVMVILFKGIPLESTDGERLEKSPQCSHPGLCVQPHHIGVSVKELDLYLAYFVHT 185 (518)
T ss_pred hhhhhhhchh-eeeeeeeEEeecccccccCchhhhhcCcccCCCccccccceeeeeehhhhHHHHHHhhc
Confidence 6999987532 2455533333 4 477654 566778899888 68999999999987654
No 182
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.04 E-value=42 Score=28.65 Aligned_cols=14 Identities=36% Similarity=0.857 Sum_probs=11.8
Q ss_pred CcchHHHHHHHhhc
Q 012092 117 HRFCRECIDKAMRL 130 (471)
Q Consensus 117 H~FC~~CI~~~l~~ 130 (471)
-.||+.|+..|...
T Consensus 41 AgFCRNCLs~Wy~e 54 (104)
T COG3492 41 AGFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 35999999999873
No 183
>PRK00420 hypothetical protein; Validated
Probab=22.95 E-value=28 Score=30.79 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.2
Q ss_pred ccccccccccc
Q 012092 97 VQCPICLGIIR 107 (471)
Q Consensus 97 l~CpICl~~~~ 107 (471)
..||+|...|.
T Consensus 24 ~~CP~Cg~pLf 34 (112)
T PRK00420 24 KHCPVCGLPLF 34 (112)
T ss_pred CCCCCCCCcce
Confidence 57888875443
No 184
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.87 E-value=48 Score=23.18 Aligned_cols=13 Identities=31% Similarity=0.766 Sum_probs=8.6
Q ss_pred ccccccccccccc
Q 012092 97 VQCPICLGIIRKT 109 (471)
Q Consensus 97 l~CpICl~~~~~P 109 (471)
.+||-|...|.-|
T Consensus 3 i~CP~C~~~f~v~ 15 (37)
T PF13719_consen 3 ITCPNCQTRFRVP 15 (37)
T ss_pred EECCCCCceEEcC
Confidence 4677777776643
No 185
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=22.68 E-value=98 Score=26.08 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=30.1
Q ss_pred cccCCCcchHHHHHHHHhhhcc-cccceeeeeeecc
Q 012092 383 LCCRPTLSVRHLCQYVAHQTAL-QASEIEIYLVKEL 417 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~-~~~e~e~~~~~~~ 417 (471)
|-=+|+.|++-||+-+|....+ ++++-=+|+.+++
T Consensus 18 L~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg 53 (87)
T cd01776 18 LLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEE 53 (87)
T ss_pred eecCCCCcHHHHHHHHHHHhccCChhheeEEEEECC
Confidence 4457999999999999999999 7888888888865
No 186
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=22.64 E-value=27 Score=33.12 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.0
Q ss_pred CCCCCCcccccccc
Q 012092 131 GNNECPACRTHCAS 144 (471)
Q Consensus 131 ~~~~CP~Cr~~~~~ 144 (471)
..+.||.|...+..
T Consensus 135 ~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 135 YGFRCPQCGEMLEE 148 (178)
T ss_pred cCCcCCCCCCCCee
Confidence 36899999988764
No 187
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=22.30 E-value=1.1e+02 Score=31.81 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHhhhccccccee-eeeeecc
Q 012092 388 TLSVRHLCQYVAHQTALQASEIE-IYLVKEL 417 (471)
Q Consensus 388 t~sv~hl~~~va~~~~~~~~e~e-~~~~~~~ 417 (471)
+-+|+.|-+.||.|+.+++.+|+ ||.-|+.
T Consensus 23 ~t~I~~lke~Vak~~gvp~D~L~viFaGKeL 53 (446)
T KOG0006|consen 23 DTSIFQLKEVVAKRQGVPADQLRVIFAGKEL 53 (446)
T ss_pred CCCHHHHHHHHHHhhCCChhheEEEEecccc
Confidence 44899999999999999999999 5666654
No 188
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=22.16 E-value=1.1e+02 Score=25.03 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=22.2
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeeeeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYLVK 415 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~ 415 (471)
+.|.|+-||.+|-+-|+.++.++...+.+|.-.
T Consensus 18 ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~ 50 (80)
T PF11543_consen 18 IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDR 50 (80)
T ss_dssp EEE-TTSBHHHHHHHHHHHS---TTT---BSSG
T ss_pred EEcCCcccHHHHHHHHHHHcCCCCcceEEEecC
Confidence 457799999999999999999998877776553
No 189
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=21.96 E-value=40 Score=38.94 Aligned_cols=32 Identities=28% Similarity=0.548 Sum_probs=24.2
Q ss_pred cccccccccccc--------ceeeccCCCcchHHHHHHHh
Q 012092 97 VQCPICLGIIRK--------TRTVMECLHRFCRECIDKAM 128 (471)
Q Consensus 97 l~CpICl~~~~~--------Pv~v~~CgH~FC~~CI~~~l 128 (471)
..|..|...|.. ...+-.||..||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 569999998852 33356899999999986543
No 190
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.51 E-value=48 Score=37.74 Aligned_cols=44 Identities=23% Similarity=0.552 Sum_probs=18.8
Q ss_pred cccccccccc-cceeeccCCCc----chHHHHHHHhhcCCCCCCcccccc
Q 012092 98 QCPICLGIIR-KTRTVMECLHR----FCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 98 ~CpICl~~~~-~Pv~v~~CgH~----FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
.||-|..... ...++..||.. +|..|=... ..+...||.|.+.+
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~-~~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEV-PVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCC-CcccccccccCCcc
Confidence 5666665432 22233334432 344443221 11334566665544
No 191
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.36 E-value=58 Score=22.11 Aligned_cols=10 Identities=30% Similarity=0.760 Sum_probs=7.5
Q ss_pred CCCCCccccc
Q 012092 132 NNECPACRTH 141 (471)
Q Consensus 132 ~~~CP~Cr~~ 141 (471)
...||.|...
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4689999764
No 192
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=21.33 E-value=34 Score=39.67 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=34.9
Q ss_pred cccccccccccccc-ceeeccCCCcchHHHHHHHhh-----cCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRK-TRTVMECLHRFCRECIDKAMR-----LGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~-Pv~v~~CgH~FC~~CI~~~l~-----~~~~~CP~Cr~~~~~ 144 (471)
..-.|..|..-+.+ --.+..|++.||..|+..|.- .....|+.|+..+..
T Consensus 228 ~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~ 283 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNK 283 (889)
T ss_pred cchhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCC
Confidence 34579999876664 334578999999999999841 123467877776653
No 193
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=21.31 E-value=71 Score=26.20 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=26.0
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
..|.|++.=.|.|++ -=++|++|||..+.++..+|+|.
T Consensus 26 ~~l~i~v~app~~Gk----------------AN~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 26 GALKIRVTAPPVDGK----------------ANKALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp T-EEEEBSTTCCCCC----------------HHHHHHHHHHHHCT--TTCEEEC
T ss_pred eEEEEEEecCCCcCh----------------hHHHHHHHHHHHhCCCcccEEEE
Confidence 355666666666665 23789999999999999999864
No 194
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=21.28 E-value=95 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=28.9
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
|+-|.||-||--|-+-|+-=+..++++..+|
T Consensus 15 F~dakes~tVlelK~~iegI~k~pp~dQrL~ 45 (119)
T cd01788 15 FTDAKESTTVYELKRIVEGILKRPPEDQRLY 45 (119)
T ss_pred EeecCCcccHHHHHHHHHHHhcCChhHheee
Confidence 6789999999999999999999999999888
No 195
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=21.14 E-value=31 Score=31.87 Aligned_cols=26 Identities=19% Similarity=0.765 Sum_probs=16.8
Q ss_pred ccccccccccccceeeccCCCcchH-HHH
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCR-ECI 124 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~-~CI 124 (471)
-+|.||. +..+..++.||..||. .|+
T Consensus 119 ~fCaVCG--~~S~ysC~~CG~kyCsv~C~ 145 (156)
T KOG3362|consen 119 KFCAVCG--YDSKYSCVNCGTKYCSVRCL 145 (156)
T ss_pred hhhhhcC--CCchhHHHhcCCceeechhh
Confidence 4688888 4444456788887764 344
No 196
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=21.07 E-value=79 Score=39.84 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=19.1
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHH-HHH
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQ-YVA 399 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~-~va 399 (471)
.|++-+|.+++ -+|||=-|-+ |+-
T Consensus 553 ~hmvy~sinqe-------------ln~s~fd~~esf~~ 577 (2849)
T PTZ00415 553 KHLVYISINEE-------------LNFSLFDFYEAFAN 577 (2849)
T ss_pred eeEEEEEeccc-------------cceeHHHHHHHHhh
Confidence 48888888888 7899988887 543
No 197
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=20.95 E-value=1.3e+02 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=41.8
Q ss_pred cCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchhhhhccc-cCCCcceee
Q 012092 385 CRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NLGHGFLLL 463 (471)
Q Consensus 385 c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl~~l~~~-~~~~~~l~l 463 (471)
=..++||-++...|-.++.|.++++ .+.+.+. ++.-..||++|+.. -.--|.|-+
T Consensus 47 VP~d~tV~qF~~iIRkrl~l~~~k~-flfVnn~-----------------------lp~~s~~mg~lYe~~KDeDGFLYi 102 (121)
T PTZ00380 47 LPRDATVAELEAAVRQALGTSAKKV-TLAIEGS-----------------------TPAVTATVGDIADACKRDDGFLYV 102 (121)
T ss_pred cCCCCcHHHHHHHHHHHcCCChhHE-EEEECCc-----------------------cCCccchHHHHHHHhcCCCCeEEE
Confidence 3489999999999999999998885 2223211 11134578888887 556888888
Q ss_pred hhhh
Q 012092 464 AYQK 467 (471)
Q Consensus 464 ~y~~ 467 (471)
.|..
T Consensus 103 ~Ys~ 106 (121)
T PTZ00380 103 SVRT 106 (121)
T ss_pred EEcc
Confidence 8853
No 198
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=20.82 E-value=82 Score=24.96 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=26.9
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
.|...|+.||..|-++||.+..+++++.-++
T Consensus 12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li 42 (70)
T cd01794 12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQRWF 42 (70)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHeEEE
Confidence 3677899999999999999999999887654
No 199
>PRK00647 hypothetical protein; Validated
Probab=20.65 E-value=74 Score=27.39 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=31.9
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
+.|.|.+.=.|.|++ -=++|++|||.++.++...|+|.
T Consensus 27 ~~Lkvrv~ApPvdGK----------------AN~ali~~LAk~l~vpks~I~Iv 64 (96)
T PRK00647 27 GILKVRVTEVPEKGK----------------ANDAVIALLAKFLSLPKRDVTLI 64 (96)
T ss_pred CEEEEEEecCCCCCh----------------HHHHHHHHHHHHhCCChhhEEEE
Confidence 568888888888887 33799999999999999998764
No 200
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=20.42 E-value=95 Score=24.37 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=25.8
Q ss_pred ccccCCCcchHHHHHHHHhhhcc--cccceeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTAL--QASEIEIY 412 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~--~~~e~e~~ 412 (471)
.|.+.|+.||..|-+.|+.++.+ +++++-|+
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~ 46 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI 46 (77)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE
Confidence 36788999999999999999987 77776544
No 201
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=20.13 E-value=87 Score=24.35 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=26.3
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
|-+.|+.||..|-++||.+..+++.++-++
T Consensus 13 ~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li 42 (70)
T cd01798 13 VEVDPDTDIKQLKEVVAKRQGVPPDQLRVI 42 (70)
T ss_pred EEECCCChHHHHHHHHHHHHCCCHHHeEEE
Confidence 567799999999999999999999887653
No 202
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=20.06 E-value=60 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=15.2
Q ss_pred cccccccccc-ceeeccCCCcchHH
Q 012092 99 CPICLGIIRK-TRTVMECLHRFCRE 122 (471)
Q Consensus 99 CpICl~~~~~-Pv~v~~CgH~FC~~ 122 (471)
|.+|.....- |....-|+..||..
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCcccccCeECCccCCccccc
Confidence 5566654444 76645588888863
No 203
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.05 E-value=57 Score=32.41 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=14.6
Q ss_pred ccccccccccc--cceeeccCCCcc
Q 012092 97 VQCPICLGIIR--KTRTVMECLHRF 119 (471)
Q Consensus 97 l~CpICl~~~~--~Pv~v~~CgH~F 119 (471)
+.||||...|. ...-+.+++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 68999999885 221123446766
Done!