Query 012092
Match_columns 471
No_of_seqs 374 out of 1905
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl2_A E3 ubiquitin-protein li 99.5 1.2E-14 4.2E-19 126.9 6.0 75 90-165 46-120 (124)
2 1t1h_A Gspef-atpub14, armadill 99.5 2.6E-14 8.9E-19 114.5 4.8 68 93-162 5-72 (78)
3 1jm7_B BARD1, BRCA1-associated 99.5 2.2E-14 7.5E-19 124.2 4.6 90 89-182 15-115 (117)
4 3ztg_A E3 ubiquitin-protein li 99.5 4.6E-14 1.6E-18 116.6 5.9 70 93-163 10-81 (92)
5 2ckl_B Ubiquitin ligase protei 99.4 3.8E-14 1.3E-18 129.6 4.8 75 92-166 50-124 (165)
6 1z6u_A NP95-like ring finger p 99.4 9.6E-14 3.3E-18 125.9 5.7 73 91-164 73-145 (150)
7 2ckl_A Polycomb group ring fin 99.4 1.4E-13 4.8E-18 117.3 6.1 77 89-166 8-87 (108)
8 3lrq_A E3 ubiquitin-protein li 99.4 9.5E-14 3.2E-18 117.2 4.2 74 87-161 13-86 (100)
9 2kr4_A Ubiquitin conjugation f 99.4 1.7E-13 5.8E-18 112.7 5.4 67 93-162 11-77 (85)
10 2kre_A Ubiquitin conjugation f 99.4 3.1E-13 1.1E-17 114.6 5.8 67 93-162 26-92 (100)
11 1wgm_A Ubiquitin conjugation f 99.4 2.9E-13 1E-17 114.4 5.6 67 93-162 19-86 (98)
12 2y43_A E3 ubiquitin-protein li 99.4 2.6E-13 8.9E-18 113.7 4.8 70 91-162 17-86 (99)
13 1rmd_A RAG1; V(D)J recombinati 99.3 1.7E-13 5.7E-18 118.2 1.6 94 93-194 20-113 (116)
14 3l11_A E3 ubiquitin-protein li 99.3 2.7E-13 9.2E-18 116.7 2.7 71 93-164 12-88 (115)
15 3gs2_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 111.9 4.1 88 378-467 21-109 (111)
16 3knv_A TNF receptor-associated 99.3 1.3E-13 4.6E-18 123.7 -0.4 98 91-196 26-132 (141)
17 4ayc_A E3 ubiquitin-protein li 99.3 1.3E-12 4.5E-17 116.3 6.0 66 93-163 50-115 (138)
18 2yu4_A E3 SUMO-protein ligase 99.3 1.4E-12 4.9E-17 108.9 4.9 69 93-163 4-81 (94)
19 2egp_A Tripartite motif-contai 99.3 1.4E-13 4.6E-18 110.2 -1.5 64 92-157 8-77 (79)
20 2c2l_A CHIP, carboxy terminus 99.3 1.9E-12 6.6E-17 126.1 5.5 69 93-163 205-273 (281)
21 2djb_A Polycomb group ring fin 99.3 2.4E-12 8.1E-17 101.8 4.3 53 91-144 10-62 (72)
22 3hct_A TNF receptor-associated 99.3 2E-12 6.9E-17 112.0 4.1 93 91-192 13-105 (118)
23 1jm7_A BRCA1, breast cancer ty 99.3 1.7E-12 5.7E-17 110.6 3.4 74 89-164 14-89 (112)
24 2csy_A Zinc finger protein 183 99.3 2.4E-12 8.1E-17 104.0 4.0 61 94-158 13-73 (81)
25 2yur_A Retinoblastoma-binding 99.3 3.2E-12 1.1E-16 101.8 4.6 56 92-148 11-68 (74)
26 2ecw_A Tripartite motif-contai 99.3 6.7E-13 2.3E-17 107.0 0.5 64 92-157 15-83 (85)
27 2f42_A STIP1 homology and U-bo 99.2 5.7E-12 1.9E-16 117.6 6.0 69 92-162 102-170 (179)
28 2ecv_A Tripartite motif-contai 99.2 9.6E-13 3.3E-17 106.1 0.2 64 92-157 15-83 (85)
29 2ecy_A TNF receptor-associated 99.2 5.4E-12 1.9E-16 97.9 4.3 52 92-144 11-62 (66)
30 3hcs_A TNF receptor-associated 99.2 1.7E-12 5.9E-17 119.0 -0.0 74 91-166 13-86 (170)
31 2ysl_A Tripartite motif-contai 99.2 1.2E-11 4.1E-16 97.4 4.6 52 92-144 16-69 (73)
32 3htk_C E3 SUMO-protein ligase 99.1 1.7E-11 5.7E-16 120.2 4.4 68 93-161 178-248 (267)
33 2ysj_A Tripartite motif-contai 99.1 2.8E-11 9.6E-16 92.9 4.2 46 92-138 16-63 (63)
34 1g25_A CDK-activating kinase a 99.1 3.3E-11 1.1E-15 93.2 3.4 54 95-149 2-59 (65)
35 2d8t_A Dactylidin, ring finger 99.1 3.7E-11 1.3E-15 94.6 3.6 47 95-143 14-60 (71)
36 3ng2_A RNF4, snurf, ring finge 99.1 4.1E-11 1.4E-15 93.7 3.4 49 94-144 8-63 (71)
37 2ea6_A Ring finger protein 4; 99.1 4.5E-11 1.5E-15 92.7 3.2 49 93-143 12-67 (69)
38 2ct2_A Tripartite motif protei 99.1 7E-11 2.4E-15 96.1 4.3 52 92-144 11-68 (88)
39 2ecj_A Tripartite motif-contai 99.1 8.3E-11 2.8E-15 88.3 4.0 46 92-138 11-58 (58)
40 2ect_A Ring finger protein 126 99.0 1.4E-10 4.7E-15 92.7 3.7 50 94-144 13-64 (78)
41 2xeu_A Ring finger protein 4; 99.0 9.5E-11 3.2E-15 89.5 2.2 49 95-144 2-56 (64)
42 1chc_A Equine herpes virus-1 r 99.0 1.4E-10 4.7E-15 90.1 3.0 49 95-144 4-52 (68)
43 1e4u_A Transcriptional repress 99.0 3.3E-10 1.1E-14 91.8 4.9 51 93-144 8-62 (78)
44 2ecn_A Ring finger protein 141 99.0 1.7E-10 5.8E-15 90.2 2.6 50 92-144 11-60 (70)
45 1iym_A EL5; ring-H2 finger, ub 99.0 3.2E-10 1.1E-14 84.4 3.9 48 94-143 3-54 (55)
46 2ep4_A Ring finger protein 24; 98.9 3.3E-10 1.1E-14 89.5 3.5 51 93-144 12-64 (74)
47 2kiz_A E3 ubiquitin-protein li 98.9 4.3E-10 1.5E-14 87.7 4.0 49 95-144 13-63 (69)
48 2ecm_A Ring finger and CHY zin 98.9 4.4E-10 1.5E-14 83.5 3.5 48 95-143 4-54 (55)
49 2l0b_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 93.0 3.7 48 94-143 38-88 (91)
50 1v87_A Deltex protein 2; ring- 98.9 7.6E-10 2.6E-14 94.6 4.7 51 95-145 24-95 (114)
51 1x4j_A Ring finger protein 38; 98.9 3.7E-10 1.3E-14 89.7 2.3 50 94-144 21-72 (75)
52 1bor_A Transcription factor PM 98.9 5.1E-10 1.7E-14 84.5 1.9 45 95-144 5-49 (56)
53 4ic3_A E3 ubiquitin-protein li 98.8 5.6E-10 1.9E-14 89.0 1.6 49 90-144 18-67 (74)
54 4ap4_A E3 ubiquitin ligase RNF 98.8 1.4E-09 4.9E-14 94.3 3.7 49 94-144 5-60 (133)
55 2ecg_A Baculoviral IAP repeat- 98.8 2.8E-09 9.4E-14 85.0 3.4 48 91-144 20-68 (75)
56 2y1n_A E3 ubiquitin-protein li 98.8 3.8E-09 1.3E-13 109.1 5.0 54 91-145 327-380 (389)
57 2ecl_A Ring-box protein 2; RNF 98.8 4.8E-09 1.6E-13 85.0 4.2 48 95-143 14-75 (81)
58 3dpl_R Ring-box protein 1; ubi 98.6 1.9E-08 6.5E-13 86.1 4.3 48 95-143 36-100 (106)
59 4ap4_A E3 ubiquitin ligase RNF 98.6 9.6E-09 3.3E-13 89.0 1.8 49 94-144 70-125 (133)
60 2yho_A E3 ubiquitin-protein li 98.6 8.9E-09 3.1E-13 83.3 1.5 49 90-144 12-61 (79)
61 2vje_A E3 ubiquitin-protein li 98.6 2E-08 7E-13 77.8 3.2 47 95-143 7-56 (64)
62 2vje_B MDM4 protein; proto-onc 98.5 3.7E-08 1.3E-12 76.1 3.2 47 95-143 6-55 (63)
63 2bay_A PRE-mRNA splicing facto 98.5 2.3E-08 7.7E-13 77.2 1.7 52 96-150 3-55 (61)
64 1wim_A KIAA0161 protein; ring 98.5 2.9E-08 9.9E-13 82.3 1.7 47 95-141 4-61 (94)
65 3t6p_A Baculoviral IAP repeat- 98.4 5.7E-08 2E-12 99.1 2.7 50 89-144 288-338 (345)
66 4a0k_B E3 ubiquitin-protein li 98.4 4.1E-08 1.4E-12 85.5 0.0 47 96-143 48-111 (117)
67 2ea5_A Cell growth regulator w 98.3 2E-07 6.9E-12 73.2 3.1 44 95-144 14-58 (68)
68 2d8s_A Cellular modulator of i 98.3 4.2E-07 1.4E-11 73.8 3.9 54 95-149 14-75 (80)
69 2ct0_A Non-SMC element 1 homol 98.0 3.6E-06 1.2E-10 67.4 4.5 49 95-143 14-63 (74)
70 3vk6_A E3 ubiquitin-protein li 98.0 3.7E-06 1.3E-10 70.7 3.9 48 97-144 2-49 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00017 5.7E-09 55.2 3.9 47 96-143 6-58 (60)
72 3k1l_B Fancl; UBC, ring, RWD, 97.3 4.5E-05 1.5E-09 77.3 0.6 49 96-144 308-373 (381)
73 3nw0_A Non-structural maintena 96.3 0.0026 8.9E-08 61.5 4.0 49 96-144 180-229 (238)
74 3m62_A Ubiquitin conjugation f 96.1 0.0067 2.3E-07 68.8 6.8 68 92-162 887-955 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 94.8 0.013 4.6E-07 48.3 2.6 74 95-181 2-79 (101)
76 3i2d_A E3 SUMO-protein ligase 93.9 0.049 1.7E-06 55.7 5.1 68 93-161 246-316 (371)
77 4fo9_A E3 SUMO-protein ligase 93.6 0.061 2.1E-06 54.9 5.0 68 93-161 212-282 (360)
78 2ko5_A Ring finger protein Z; 92.0 0.084 2.9E-06 43.8 2.8 48 94-144 26-73 (99)
79 2cs3_A Protein C14ORF4, MY039 82.5 1.7 6E-05 35.0 4.8 34 95-129 14-51 (93)
80 1weo_A Cellulose synthase, cat 80.7 1.5 5.2E-05 35.9 4.0 48 96-143 16-69 (93)
81 2r2q_A Gamma-aminobutyric acid 80.4 3 0.0001 35.2 6.0 83 359-466 26-109 (110)
82 3h9d_A ATG8, microtubule-assoc 80.4 3.3 0.00011 35.6 6.3 81 364-467 33-114 (119)
83 2zjd_A Microtubule-associated 79.8 3.4 0.00012 36.1 6.3 81 365-468 38-121 (130)
84 1eo6_A GATE-16, golgi-associat 79.6 3.3 0.00011 35.4 6.0 76 369-467 35-111 (117)
85 4gdk_A Ubiquitin-like protein 77.7 5 0.00017 32.9 6.3 80 363-467 6-86 (91)
86 3rui_B Autophagy-related prote 76.0 5.1 0.00017 34.4 6.1 79 366-467 34-113 (118)
87 1wz3_A Autophagy 12B, ATG12B, 74.6 5.3 0.00018 33.0 5.7 79 359-467 12-91 (96)
88 3m95_A Autophagy related prote 69.4 8.5 0.00029 33.4 6.0 77 369-468 43-120 (125)
89 2lri_C Autoimmune regulator; Z 60.0 7.8 0.00027 29.7 3.6 46 96-142 12-60 (66)
90 1z60_A TFIIH basal transcripti 56.3 6.9 0.00024 29.5 2.6 41 97-138 16-58 (59)
91 3mjh_B Early endosome antigen 56.2 2.6 8.8E-05 28.5 0.2 17 95-111 4-20 (34)
92 3w1s_C Ubiquitin-like protein 53.2 17 0.00057 29.7 4.7 77 363-467 9-86 (91)
93 1uh6_A Ubiquitin-like 5; beta- 50.7 30 0.001 28.6 6.0 46 358-411 26-71 (100)
94 2zet_C Melanophilin; complex, 48.9 2.4 8.2E-05 38.1 -1.2 46 95-141 67-117 (153)
95 1joc_A EEA1, early endosomal a 47.6 7.4 0.00025 33.5 1.8 32 96-127 69-103 (125)
96 1wil_A KIAA1045 protein; ring 46.6 15 0.00051 29.8 3.3 48 93-140 12-75 (89)
97 3n3k_B Ubiquitin; hydrolase, p 46.4 20 0.00067 27.4 4.0 32 382-413 17-48 (85)
98 2xqn_T Testin, TESS; metal-bin 45.9 13 0.00043 31.2 3.0 47 95-144 29-75 (126)
99 3mtn_B UBA80, ubcep1, ubiquiti 44.6 21 0.00072 27.1 3.9 32 382-413 17-48 (85)
100 2l5u_A Chromodomain-helicase-D 43.6 15 0.00053 27.3 2.8 45 95-140 10-57 (61)
101 2k16_A Transcription initiatio 42.9 11 0.00037 29.1 2.0 49 95-143 17-70 (75)
102 1j8c_A Ubiquitin-like protein 42.0 51 0.0017 27.9 6.2 46 359-413 31-76 (125)
103 2ct7_A Ring finger protein 31; 41.6 4 0.00014 32.7 -0.9 30 98-127 27-61 (86)
104 2gmg_A Hypothetical protein PF 40.7 8.1 0.00028 32.5 0.9 34 104-143 62-95 (105)
105 3a9j_A Ubiquitin; protein comp 40.6 33 0.0011 25.2 4.4 32 382-413 14-45 (76)
106 1dvp_A HRS, hepatocyte growth 40.3 10 0.00035 35.4 1.6 32 95-126 160-194 (220)
107 2cup_A Skeletal muscle LIM-pro 39.9 11 0.00037 30.2 1.6 46 95-143 32-77 (101)
108 1wd2_A Ariadne-1 protein homol 39.9 3.5 0.00012 31.1 -1.4 34 96-129 6-46 (60)
109 1vfy_A Phosphatidylinositol-3- 39.9 15 0.00052 28.3 2.3 30 97-126 12-44 (73)
110 2jne_A Hypothetical protein YF 39.2 2.7 9.1E-05 35.0 -2.2 40 97-143 33-72 (101)
111 2jmo_A Parkin; IBR, E3 ligase, 38.9 4.9 0.00017 31.8 -0.7 33 96-128 25-69 (80)
112 1wx8_A Riken cDNA 4931431F19; 38.5 33 0.0011 27.1 4.3 47 357-412 14-60 (96)
113 1z2q_A LM5-1; membrane protein 38.4 14 0.00048 29.3 1.9 33 95-127 20-55 (84)
114 3t7l_A Zinc finger FYVE domain 38.0 14 0.00049 29.8 1.9 32 96-127 20-54 (90)
115 1we9_A PHD finger family prote 37.9 7.1 0.00024 29.2 0.1 47 95-141 5-58 (64)
116 3zyq_A Hepatocyte growth facto 37.8 12 0.00043 35.1 1.8 32 96-127 164-198 (226)
117 2yw8_A RUN and FYVE domain-con 37.8 14 0.00048 29.2 1.9 33 95-127 18-53 (82)
118 1m3v_A FLIN4, fusion of the LI 37.3 21 0.00073 29.8 3.1 49 95-144 31-81 (122)
119 2yt5_A Metal-response element- 36.9 7.1 0.00024 29.3 -0.0 49 95-143 5-63 (66)
120 2d8v_A Zinc finger FYVE domain 36.8 14 0.00047 28.6 1.5 31 96-128 8-39 (67)
121 2o35_A Hypothetical protein DU 36.7 12 0.00041 31.2 1.3 12 118-129 42-53 (105)
122 2lbm_A Transcriptional regulat 36.6 24 0.00081 31.2 3.3 44 96-140 63-116 (142)
123 3fyb_A Protein of unknown func 36.4 12 0.00041 31.1 1.3 12 118-129 41-52 (104)
124 4g9i_A Hydrogenase maturation 35.8 11 0.00039 41.9 1.4 50 94-143 104-189 (772)
125 1y02_A CARP2, FYVE-ring finger 35.6 15 0.00051 31.5 1.8 47 95-142 18-67 (120)
126 1ndd_A NEDD8, protein (ubiquit 35.0 43 0.0015 24.6 4.2 32 382-413 14-45 (76)
127 2hj8_A Interferon-induced 17 k 34.4 33 0.0011 26.8 3.6 48 358-413 2-49 (88)
128 1wfk_A Zinc finger, FYVE domai 34.0 15 0.00052 29.5 1.5 31 96-126 9-42 (88)
129 3o36_A Transcription intermedi 33.9 12 0.00041 33.9 1.0 45 97-142 5-52 (184)
130 3mpx_A FYVE, rhogef and PH dom 33.8 8.7 0.0003 39.0 0.0 34 95-128 374-410 (434)
131 1x4u_A Zinc finger, FYVE domai 33.6 17 0.0006 28.7 1.8 32 95-126 13-47 (84)
132 1sif_A Ubiquitin; hydrophobic 33.6 40 0.0014 26.3 4.0 44 364-413 11-54 (88)
133 2bwf_A Ubiquitin-like protein 33.4 50 0.0017 24.4 4.4 32 382-413 17-48 (77)
134 3ttc_A HYPF, transcriptional r 33.2 13 0.00044 40.8 1.2 49 94-142 15-99 (657)
135 3k9o_B Ubiquitin, UBB+1; E2-25 32.8 44 0.0015 26.2 4.2 32 382-413 15-46 (96)
136 1zbd_B Rabphilin-3A; G protein 32.4 15 0.0005 32.1 1.2 46 95-140 54-106 (134)
137 4dwf_A HLA-B-associated transc 32.1 44 0.0015 25.9 4.0 47 359-413 4-50 (90)
138 1mm2_A MI2-beta; PHD, zinc fin 32.1 11 0.00038 28.1 0.4 45 96-141 9-56 (61)
139 2dzi_A Ubiquitin-like protein 31.3 55 0.0019 24.5 4.3 46 360-413 7-52 (81)
140 1wh3_A 59 kDa 2'-5'-oligoadeny 31.2 52 0.0018 25.1 4.3 32 382-413 21-52 (87)
141 3vth_A Hydrogenase maturation 30.9 14 0.00049 41.1 1.1 49 95-143 110-194 (761)
142 2fiy_A Protein FDHE homolog; F 30.1 7.9 0.00027 38.5 -1.0 45 95-141 181-231 (309)
143 3dbh_I NEDD8; cell cycle, acti 30.1 49 0.0017 25.3 3.9 46 359-412 11-56 (88)
144 3phx_B Ubiquitin-like protein 30.1 53 0.0018 24.6 4.1 47 358-412 2-48 (79)
145 4hcn_B Polyubiquitin, ubiquiti 29.9 48 0.0017 26.4 4.0 49 356-412 18-66 (98)
146 3vdz_A Ubiquitin-40S ribosomal 29.3 54 0.0018 26.9 4.2 46 360-413 35-80 (111)
147 1f62_A Transcription factor WS 29.3 32 0.0011 24.3 2.4 43 98-140 2-49 (51)
148 3u5n_A E3 ubiquitin-protein li 29.2 15 0.00051 34.0 0.8 45 97-142 8-55 (207)
149 1x61_A Thyroid receptor intera 29.1 45 0.0015 24.7 3.4 35 95-129 32-66 (72)
150 2rgt_A Fusion of LIM/homeobox 28.1 46 0.0016 29.3 3.8 46 95-144 32-77 (169)
151 4eew_A Large proline-rich prot 27.8 57 0.002 25.1 3.9 47 358-412 15-61 (88)
152 2kdi_A Ubiquitin, vacuolar pro 27.5 60 0.0021 26.8 4.2 47 359-413 8-54 (114)
153 1rut_X Flinc4, fusion protein 27.2 27 0.00092 31.5 2.1 48 95-144 31-81 (188)
154 3v6c_B Ubiquitin; structural g 27.2 67 0.0023 25.0 4.3 49 357-413 14-62 (91)
155 4fbj_B NEDD8; effector-HOST ta 26.6 63 0.0022 25.1 4.0 32 382-413 14-45 (88)
156 2jtn_A LIM domain-binding prot 25.4 39 0.0013 30.1 2.9 46 95-144 86-131 (182)
157 1yx5_B Ubiquitin; proteasome, 25.0 80 0.0027 24.9 4.4 32 382-413 14-45 (98)
158 3v43_A Histone acetyltransfera 25.0 54 0.0019 27.2 3.5 44 96-139 5-62 (112)
159 1we7_A SF3A1 protein; structur 24.8 78 0.0027 26.0 4.5 31 383-413 50-80 (115)
160 3plu_A Ubiquitin-like modifier 24.8 46 0.0016 27.2 2.9 76 356-465 17-92 (93)
161 2uyz_B Small ubiquitin-related 24.5 62 0.0021 24.3 3.5 44 363-412 4-47 (79)
162 2yql_A PHD finger protein 21A; 24.4 12 0.0004 27.4 -0.8 45 95-140 8-55 (56)
163 2xjy_A Rhombotin-2; oncoprotei 24.4 43 0.0015 27.9 2.8 48 95-144 28-78 (131)
164 2puy_A PHD finger protein 21A; 24.0 15 0.00051 27.1 -0.2 46 96-142 5-53 (60)
165 3lqh_A Histone-lysine N-methyl 24.0 19 0.00066 33.0 0.5 46 97-142 3-64 (183)
166 1wyw_B Ubiquitin-like protein 23.3 70 0.0024 25.5 3.7 45 363-413 22-66 (97)
167 2l43_A N-teminal domain from h 23.2 30 0.001 27.8 1.4 49 95-143 24-77 (88)
168 1xwh_A Autoimmune regulator; P 23.2 21 0.0007 27.0 0.4 47 95-142 7-56 (66)
169 2lv9_A Histone-lysine N-methyl 22.7 26 0.00089 28.6 1.0 43 97-140 29-75 (98)
170 2ri7_A Nucleosome-remodeling f 22.4 24 0.00081 31.4 0.7 46 95-141 7-59 (174)
171 1v86_A DNA segment, CHR 7, way 22.2 1E+02 0.0035 24.4 4.5 30 383-412 31-60 (95)
172 3ql9_A Transcriptional regulat 21.9 64 0.0022 27.9 3.4 43 97-140 58-110 (129)
173 2d8x_A Protein pinch; LIM doma 21.6 50 0.0017 24.3 2.3 35 95-129 30-64 (70)
174 2dar_A PDZ and LIM domain prot 21.0 62 0.0021 25.2 2.9 31 97-127 52-82 (90)
175 2wyq_A HHR23A, UV excision rep 20.9 1.2E+02 0.0042 22.8 4.6 31 382-412 19-52 (85)
176 2ojr_A Ubiquitin; lanthide-bin 20.7 1E+02 0.0034 25.1 4.3 32 382-413 49-80 (111)
177 1x1m_A Ubiquitin-like protein 20.4 1.4E+02 0.0047 24.2 5.1 28 385-412 40-71 (107)
178 1fp0_A KAP-1 corepressor; PHD 20.3 45 0.0015 27.0 1.9 46 95-141 24-72 (88)
179 2ctu_A Zinc finger protein 483 20.2 32 0.0011 24.5 1.0 37 95-146 17-53 (73)
180 2cur_A Skeletal muscle LIM-pro 20.1 78 0.0027 23.1 3.2 35 95-129 30-64 (69)
No 1
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=126.86 Aligned_cols=75 Identities=25% Similarity=0.649 Sum_probs=66.7
Q ss_pred hhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccch
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDI 165 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c 165 (471)
...+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||+||..+.....+.+|..+.+++.+++|.-
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGY 120 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTT
T ss_pred HHhCccCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcccc
Confidence 4456678999999999999996 89999999999999998556699999999986578999999999999998863
No 2
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.47 E-value=2.6e-14 Score=114.54 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=60.6
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+.+.+.|+||+++|.+|+. ++|||+||..||..|+..+...||+|+..+. ...+.+|..+.++|+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS-SCCCEECTTTHHHHHHHH
T ss_pred CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCC-hhhCccCHHHHHHHHHHH
Confidence 5578999999999999996 8999999999999999865789999999987 367889999999988774
No 3
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.47 E-value=2.2e-14 Score=124.25 Aligned_cols=90 Identities=23% Similarity=0.538 Sum_probs=60.9
Q ss_pred hhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc------
Q 012092 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY------ 162 (471)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~------ 162 (471)
.+..+.+.+.|+||+++|.+|+++.+|||+||..||..|+. ..||+||..+. ...+.+|..+.+++..+.
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~~~~~~~ 90 (117)
T 1jm7_B 15 ALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW-IQDLKINRQLDSMIQLCSKLRNLL 90 (117)
T ss_dssp HHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS-CSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc-cccccccHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999997339999999999999986 68999999986 478999999999988643
Q ss_pred -----cchhhhHHHHhhcchHHHHH
Q 012092 163 -----PDIDKYEEEELAFQDEEAAR 182 (471)
Q Consensus 163 -----p~c~~~eeel~~~ceed~~~ 182 (471)
..|..|.+.+.+||+++...
T Consensus 91 ~~~~~~~c~~h~~~~~lfc~~~~k~ 115 (117)
T 1jm7_B 91 HDNELSDLKEDKPRKSLFNDAGNKK 115 (117)
T ss_dssp HCCCCCC------------------
T ss_pred hhccccccccccccCccceeccccc
Confidence 13677777888899886543
No 4
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.46 E-value=4.6e-14 Score=116.58 Aligned_cols=70 Identities=24% Similarity=0.540 Sum_probs=60.8
Q ss_pred cCccccccccccccccceeecc-CCCcchHHHHHHHhhc-CCCCCCccccccccCCcCCccHHHHHHHHHHcc
Q 012092 93 IRKEVQCPICLGIIRKTRTVME-CLHRFCRECIDKAMRL-GNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~-CgH~FC~~CI~~~l~~-~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p 163 (471)
+.+.+.|+||+++|.+|++ ++ |||+||..||..|+.. +...||+||..+.....+.+|..+.++++.+..
T Consensus 10 ~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp CCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred CCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 5578999999999999996 78 9999999999999974 346999999998656789999999999988743
No 5
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.44 E-value=3.8e-14 Score=129.63 Aligned_cols=75 Identities=53% Similarity=1.091 Sum_probs=64.1
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccchh
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 166 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c~ 166 (471)
.+...+.|+||++.|.+|+++++|||+||..||..|+..+...||+||..+.....+.+|..+.++|..+++...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~~~ 124 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRD 124 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC----
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcchh
Confidence 355678999999999999975599999999999999996578999999999767789999999999999988643
No 6
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.42 E-value=9.6e-14 Score=125.87 Aligned_cols=73 Identities=21% Similarity=0.621 Sum_probs=64.8
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccc
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPD 164 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~ 164 (471)
..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||+||..+.....+.+|..+++++..++|.
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 345677999999999999996 9999999999999999865568999999998644899999999999999875
No 7
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.42 E-value=1.4e-13 Score=117.32 Aligned_cols=77 Identities=26% Similarity=0.690 Sum_probs=65.7
Q ss_pred hhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccC---CcCCccHHHHHHHHHHccch
Q 012092 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR---RSLRDDLNYDALIAALYPDI 165 (471)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~---~~l~~n~~l~~li~~l~p~c 165 (471)
.+..+.+.+.|+||++.|.+|+++++|||+||..||..|+.. ...||+||..+... ..+.+|..+.+++..+.+..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 86 (108)
T 2ckl_A 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVPGL 86 (108)
T ss_dssp EHHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHSTTH
T ss_pred chhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhhhH
Confidence 345667899999999999999975599999999999999984 58999999998743 26788999999999998874
Q ss_pred h
Q 012092 166 D 166 (471)
Q Consensus 166 ~ 166 (471)
.
T Consensus 87 ~ 87 (108)
T 2ckl_A 87 F 87 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.41 E-value=9.5e-14 Score=117.18 Aligned_cols=74 Identities=23% Similarity=0.459 Sum_probs=61.5
Q ss_pred HhhhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHH
Q 012092 87 IVKLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 87 ~~~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
......+.+.+.|+||++.|.+|+++++|||.||..||..|+......||+||..+. ...+..+..+.+++..+
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~ 86 (100)
T 3lrq_A 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ-LRELVNCRWAEEVTQQL 86 (100)
T ss_dssp HHHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC-GGGCEECTTHHHHHHHH
T ss_pred ccccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC-HHHhHhhHHHHHHHHHH
Confidence 334456778899999999999999669999999999999999865579999999997 46777777777776554
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.40 E-value=1.7e-13 Score=112.68 Aligned_cols=67 Identities=13% Similarity=0.057 Sum_probs=60.1
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+...+.||||+++|.+||+ ++|||+||+.||..|+.. ...||+|+.++.. ..+.+|..|.++|..+.
T Consensus 11 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~-~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE-SMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeE-CCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh-HhcchHHHHHHHHHHHH
Confidence 4578999999999999996 889999999999999984 6899999999974 68999999999998774
No 10
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.38 E-value=3.1e-13 Score=114.63 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=60.4
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+...+.||||+++|.+||. ++|||+||+.||..||. ....||+|+.++.. ..+.+|..|.++|..+.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE-SMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT-TSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh-hhceECHHHHHHHHHHH
Confidence 4578999999999999996 88999999999999998 56899999999984 78999999999998874
No 11
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.38 E-value=2.9e-13 Score=114.36 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=60.1
Q ss_pred cCccccccccccccccceeeccCC-CcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~Cg-H~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
+.+.|.||||+++|.+||. ++|| |+||+.||..||.. ...||+|+.++.. ..+.+|..|.++|..+.
T Consensus 19 ~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~-~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM-DQIRPNTELKEKIQRWL 86 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT-TTSEECHHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh-hhceEcHHHHHHHHHHH
Confidence 4578999999999999996 9999 99999999999984 6799999999984 68999999999988774
No 12
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=113.74 Aligned_cols=70 Identities=24% Similarity=0.609 Sum_probs=60.7
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
..+.+.+.|+||++.|.+|+.+++|||+||..||..|+. ....||+||..+.. ..+.+|..+.++++.+.
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~-~~l~~n~~l~~~i~~~~ 86 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE-PDLKNNRILDELVKSLN 86 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh-hhCCcCHHHHHHHHHHH
Confidence 345678899999999999997459999999999999998 45799999999874 67889999999988764
No 13
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=1.7e-13 Score=118.19 Aligned_cols=94 Identities=20% Similarity=0.439 Sum_probs=73.7
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccchhhhHHHH
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEEEE 172 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c~~~eeel 172 (471)
+.+.+.|+||++.|.+|+. ++|||+||..||..|+......||+||..+.......++..+.+++..+...|...
T Consensus 20 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~---- 94 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ---- 94 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST----
T ss_pred ccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC----
Confidence 4467899999999999996 89999999999999998656799999999986444566778888888877766543
Q ss_pred hhcchHHHHHHHHHHHHHHHhH
Q 012092 173 LAFQDEEAARNKQIQASIAQTF 194 (471)
Q Consensus 173 ~~~ceed~~~~k~i~~hl~~~~ 194 (471)
.+.+...+..+..|+..|.
T Consensus 95 ---gC~~~~~~~~~~~H~~~C~ 113 (116)
T 1rmd_A 95 ---DCNEEVSLEKYNHHVSSHK 113 (116)
T ss_dssp ---TCCCEEEHHHHHHHHHTSC
T ss_pred ---CCcchhhHhHHHHHHHHhh
Confidence 1344455677777876553
No 14
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.34 E-value=2.7e-13 Score=116.69 Aligned_cols=71 Identities=30% Similarity=0.646 Sum_probs=61.6
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc------CCcCCccHHHHHHHHHHccc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS------RRSLRDDLNYDALIAALYPD 164 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~------~~~l~~n~~l~~li~~l~p~ 164 (471)
+.+.+.|+||++.|.+|++ ++|||+||..||..|+..+...||+||..+.. ...+..|..+.+++.+++|.
T Consensus 12 ~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred CCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 4467899999999999996 89999999999999998667899999998863 35677889999999998876
No 15
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=99.32 E-value=6.5e-13 Score=111.92 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchhhhhccc-cC
Q 012092 378 LQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETLTGLQTQ-NL 456 (471)
Q Consensus 378 l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl~~l~~~-~~ 456 (471)
.|.+|++..+|.||+|||+|||.+++|+..+-| .+.++.+....+...++|+|.+..++|.+|+|..||+.++.+ |.
T Consensus 21 ~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~--~e~~~~~~~~~~~~~~~IYia~~~gq~~~L~gs~tLe~VneKywk 98 (111)
T 3gs2_A 21 AQTRYIKTSGNATVDHLSKYLAVRLALEELRSK--GESNQMNLDTASEKQYTIYIATASGQFTVLDGSFSLELVSEKYWK 98 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHH--HHSSCCSCCC--CCCEEEEEECTTSCEEECCTTSBHHHHHHHHTC
T ss_pred hceEEEEcCCCccHHHHHHHHHHHHhHHHhhcc--ccccccCccccceeeeEEEEccCCCeEEEccCcccHHHHhhhhcc
Confidence 799999999999999999999999999732222 222333444456668999999999999999999999999999 99
Q ss_pred CCcceeehhhh
Q 012092 457 GHGFLLLAYQK 467 (471)
Q Consensus 457 ~~~~l~l~y~~ 467 (471)
.+-.|+|.|+-
T Consensus 99 vnkplelYYa~ 109 (111)
T 3gs2_A 99 VNKPMELYYAP 109 (111)
T ss_dssp SSSCEEEEEEE
T ss_pred CCCCeeEEecc
Confidence 99999999974
No 16
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.32 E-value=1.3e-13 Score=123.74 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=76.0
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc--------CCcCCccHHHHHHHHHHc
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS--------RRSLRDDLNYDALIAALY 162 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~--------~~~l~~n~~l~~li~~l~ 162 (471)
..+.+.+.|+||+++|.+|++ ++|||+||..||..|+..+...||+||..+.. ...+.++..+..+|..+.
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred ccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 567889999999999999997 89999999999999998666699999997532 223557777877787777
Q ss_pred cchhhhHHHHhhcchHHHHHHHHHHH-HHHHhHHH
Q 012092 163 PDIDKYEEEELAFQDEEAARNKQIQA-SIAQTFQR 196 (471)
Q Consensus 163 p~c~~~eeel~~~ceed~~~~k~i~~-hl~~~~~r 196 (471)
..|... .+.|...+.++.. |+.++...
T Consensus 105 v~Cpn~-------GC~~~~~l~~l~~~H~~~~~~~ 132 (141)
T 3knv_A 105 AVCPSD-------GCTWKGTLKEYESCHEGRCPLM 132 (141)
T ss_dssp EECCST-------TCCCEEEHHHHHHHTTTCCHHH
T ss_pred cccCCC-------CCCCEeEHHHHHHHHHHHhHHH
Confidence 666541 2556677778886 87766543
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=1.3e-12 Score=116.29 Aligned_cols=66 Identities=33% Similarity=0.667 Sum_probs=53.0
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHcc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p 163 (471)
+.+++.|+||++.|.+|++ ++|||+||..||..|+. ....||+||+.+.. ...+..+..+|..+..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~---~~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-RKIECPICRKDIKS---KTYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC---EEECHHHHHHHHHHHT
T ss_pred ccccCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-cCCcCCCCCCcCCC---CCCccchhHHHHHHHH
Confidence 4567899999999999996 89999999999999998 46789999999863 2335556666665543
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=108.92 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=58.7
Q ss_pred cCccccccccccccccceeec-cCCCcchHHHHHHHhhcC-----CCCCCc--cccc-cccCCcCCccHHHHHHHHHHcc
Q 012092 93 IRKEVQCPICLGIIRKTRTVM-ECLHRFCRECIDKAMRLG-----NNECPA--CRTH-CASRRSLRDDLNYDALIAALYP 163 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~-~CgH~FC~~CI~~~l~~~-----~~~CP~--Cr~~-~~~~~~l~~n~~l~~li~~l~p 163 (471)
....+.||||+++|.+||+ + .|||+||+.||..||... ...||+ |+.. +. ...+.+|..|..+|..+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHHT
T ss_pred CCcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHHH
Confidence 3467999999999999996 7 599999999999999742 469999 9877 55 5789999999999988753
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-13 Score=110.18 Aligned_cols=64 Identities=27% Similarity=0.763 Sum_probs=53.0
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcC------CCCCCccccccccCCcCCccHHHHHH
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG------NNECPACRTHCASRRSLRDDLNYDAL 157 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~------~~~CP~Cr~~~~~~~~l~~n~~l~~l 157 (471)
.+.+.+.|+||++.|.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.+|..+.++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~n~~l~~l 77 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF-EHLQANQHLANI 77 (79)
T ss_dssp CCCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS-SGGGTCSSSCCC
T ss_pred hcccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH-hhCCcCHHHHHh
Confidence 45678999999999999996 8999999999999999742 5789999999874 567777655443
No 20
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.28 E-value=1.9e-12 Score=126.08 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=60.7
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHcc
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYP 163 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p 163 (471)
....+.||||+++|.+||+ ++|||+||+.||..|+..+...||+|+.++. ...+.+|..+..+|..+..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLT-QEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCC-GGGCEECHHHHHHHHHHHT
T ss_pred CCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCc-hhcCcccHHHHHHHHHHHH
Confidence 3467999999999999996 9999999999999999865556999999997 4689999999999988753
No 21
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.4e-12 Score=101.81 Aligned_cols=53 Identities=34% Similarity=0.856 Sum_probs=46.6
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..+.+.+.|+||++.|.+|+++++|||+||..||..|+.. ...||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 3456789999999999999975699999999999999984 5799999999874
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.26 E-value=2e-12 Score=111.99 Aligned_cols=93 Identities=24% Similarity=0.411 Sum_probs=73.0
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccchhhhHH
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDIDKYEE 170 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c~~~ee 170 (471)
..+.+.+.|+||++.|.+|+. ++|||+||..||..|+......||+||..+.. ..+.++..+..+|..+...|...
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~i~~l~v~C~n~-- 88 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKCPNE-- 88 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEECSST--
T ss_pred cCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH-HhcccCHHHHHHHccceeECCCC--
Confidence 456788999999999999996 89999999999999998655699999999874 66778888888888887776531
Q ss_pred HHhhcchHHHHHHHHHHHHHHH
Q 012092 171 EELAFQDEEAARNKQIQASIAQ 192 (471)
Q Consensus 171 el~~~ceed~~~~k~i~~hl~~ 192 (471)
.+.+...+..+..|+..
T Consensus 89 -----gC~~~~~~~~l~~H~~~ 105 (118)
T 3hct_A 89 -----GCLHKMELRHLEDHQAH 105 (118)
T ss_dssp -----TCCCEEEGGGSGGGTSS
T ss_pred -----CCCCEEeeHHHHHHHHH
Confidence 13444555556666543
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.7e-12 Score=110.55 Aligned_cols=74 Identities=28% Similarity=0.722 Sum_probs=59.9
Q ss_pred hhhccCccccccccccccccceeeccCCCcchHHHHHHHhhcC--CCCCCccccccccCCcCCccHHHHHHHHHHccc
Q 012092 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG--NNECPACRTHCASRRSLRDDLNYDALIAALYPD 164 (471)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~ 164 (471)
....+...+.|+||++.|.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.++..+.++++.+...
T Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 14 VINAMQKILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK-RSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHHHHHHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT-TTCBCCCSSSHHHHHHHHH
T ss_pred HHHhccCCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH-hhcCccHHHHHHHHHHHHH
Confidence 34456678899999999999996 8999999999999999842 2589999999874 6677777777777766443
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=103.98 Aligned_cols=61 Identities=20% Similarity=0.441 Sum_probs=50.3
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHH
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALI 158 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li 158 (471)
...+.|+||++.|.+|+. ++|||+||..||..|+.. ...||+||+.+. ..+.++..+.+.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~--~~~~~~~~l~~~~ 73 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-TPRCYICDQPTG--GIFNPAKELMAKL 73 (81)
T ss_dssp CCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC--SCCEECHHHHHHH
T ss_pred CCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-CCcCCCcCcccc--ccCCcHHHHHHHH
Confidence 356899999999999995 999999999999999984 679999999985 5566675544433
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.26 E-value=3.2e-12 Score=101.81 Aligned_cols=56 Identities=30% Similarity=0.707 Sum_probs=46.6
Q ss_pred ccCccccccccccccccceeecc-CCCcchHHHHHHHhhcC-CCCCCccccccccCCcC
Q 012092 92 DIRKEVQCPICLGIIRKTRTVME-CLHRFCRECIDKAMRLG-NNECPACRTHCASRRSL 148 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~-CgH~FC~~CI~~~l~~~-~~~CP~Cr~~~~~~~~l 148 (471)
.+.+.+.|+||++.|.+|+. ++ |||+||..||..|+... ...||+||+.+.....+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred cCCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 35678999999999999997 88 99999999999999843 36899999986543333
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=6.7e-13 Score=106.96 Aligned_cols=64 Identities=33% Similarity=0.821 Sum_probs=52.7
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcC-----CCCCCccccccccCCcCCccHHHHHH
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-----NNECPACRTHCASRRSLRDDLNYDAL 157 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-----~~~CP~Cr~~~~~~~~l~~n~~l~~l 157 (471)
.+.+.+.|+||++.|.+|+. ++|||+||..||..|+... ...||+||..+.. ..+.+|..++++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF-GNLKPNLHVANI 83 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT-TCCEECSCCCSS
T ss_pred hCccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH-HhCCcCHHHHHh
Confidence 35677899999999999995 8999999999999999852 6799999999874 566666655443
No 27
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.24 E-value=5.7e-12 Score=117.56 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=60.9
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
.+...+.||||+++|.+||. ++|||+||+.||..|+..+...||+|+.++.. ..+.+|..|.++|..+.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~-~~L~pN~~Lk~~Ie~~~ 170 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ-DQLIPNLAMKEVIDAFI 170 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh-hhCcchHHHHHHHHHHH
Confidence 45678999999999999996 89999999999999998544479999999974 68999999999998773
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.6e-13 Score=106.05 Aligned_cols=64 Identities=28% Similarity=0.858 Sum_probs=53.0
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhc-----CCCCCCccccccccCCcCCccHHHHHH
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-----GNNECPACRTHCASRRSLRDDLNYDAL 157 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-----~~~~CP~Cr~~~~~~~~l~~n~~l~~l 157 (471)
.+...+.|+||++.|.+|+. ++|||+||..||..|+.. +...||+||..+.. ..+.+|..+.++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~-~~~~~n~~l~~~ 83 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP-ENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS-SSCCCSCCCCCC
T ss_pred HccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH-HhcCccHHHHHh
Confidence 45678899999999999996 899999999999999874 36799999999874 667777655443
No 29
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.4e-12 Score=97.94 Aligned_cols=52 Identities=23% Similarity=0.681 Sum_probs=46.0
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+......||+||+.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35578999999999999996 89999999999999996556789999998864
No 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.19 E-value=1.7e-12 Score=119.04 Aligned_cols=74 Identities=28% Similarity=0.528 Sum_probs=63.0
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHccchh
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALYPDID 166 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~p~c~ 166 (471)
..+.+.+.|+||+++|.+|++ ++|||+||..||..|+......||+||..+.. ..+.++..+..+|..+...|.
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~~i~~l~v~C~ 86 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLE-NQLFPDNFAKREILSLMVKCP 86 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG-GGCEECHHHHHHHHTSEEECC
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcch-hhhhhhHHHHHHHhhcccCCC
Confidence 457788999999999999997 89999999999999998655699999999874 556778888888888766653
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.2e-11 Score=97.39 Aligned_cols=52 Identities=40% Similarity=0.931 Sum_probs=45.3
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhc--CCCCCCcccccccc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPACRTHCAS 144 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~Cr~~~~~ 144 (471)
.+.+.+.|+||++.|.+|+. ++|||.||..||..|+.. ....||+||+.+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 45678899999999999996 799999999999999972 45689999998863
No 32
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.7e-11 Score=120.18 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=59.5
Q ss_pred cCccccccccccccccceeeccCCCcchHHHHHHHhhc-CCCCCCc--cccccccCCcCCccHHHHHHHHHH
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL-GNNECPA--CRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~-~~~~CP~--Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
....+.||||+.+|.+||+.+.|||+||+.||..||.. +...||+ |++.+. ...+.+|..|..++..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~ 248 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIA 248 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHH
Confidence 45789999999999999975699999999999999974 3468999 999887 47899999999888765
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=92.91 Aligned_cols=46 Identities=43% Similarity=1.019 Sum_probs=40.8
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhc--CCCCCCcc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPAC 138 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~C 138 (471)
.+.+.+.|+||++.|.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45678999999999999996 799999999999999974 45689998
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=3.3e-11 Score=93.22 Aligned_cols=54 Identities=30% Similarity=0.688 Sum_probs=44.6
Q ss_pred cccccccccc-ccccce---eeccCCCcchHHHHHHHhhcCCCCCCccccccccCCcCC
Q 012092 95 KEVQCPICLG-IIRKTR---TVMECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLR 149 (471)
Q Consensus 95 ~~l~CpICl~-~~~~Pv---~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~ 149 (471)
+++.|+||++ .+.+|+ .+++|||+||..||..|+..+...||+||+.+.. ..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~-~~~~ 59 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK-SNFR 59 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS-CCCE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc-ccce
Confidence 3578999999 999884 2489999999999999987666789999999873 4443
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=94.64 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=42.6
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..+.|+||++.+.+|+. ++|||.||..||..|+.. ...||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASWL-GKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTTC-SSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHHC-CCcCcCcCchhC
Confidence 56789999999999996 899999999999999984 579999999886
No 36
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.08 E-value=4.1e-11 Score=93.67 Aligned_cols=49 Identities=33% Similarity=0.833 Sum_probs=43.2
Q ss_pred Cccccccccccccccc-------eeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+.+.|+||++.|.+| + +++|||.||..||..|+.. ...||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEE-ECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeE-eCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4568999999999988 5 5999999999999999984 4799999999874
No 37
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.5e-11 Score=92.69 Aligned_cols=49 Identities=33% Similarity=0.817 Sum_probs=43.1
Q ss_pred cCccccccccccccccc-------eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 93 IRKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 93 l~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+...+.|+||++.|.+| + +++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEE-ECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeE-eCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 34678999999999987 5 5999999999999999985 679999999875
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7e-11 Score=96.06 Aligned_cols=52 Identities=27% Similarity=0.798 Sum_probs=44.9
Q ss_pred ccCcccccccccccccc----ceeeccCCCcchHHHHHHHhhcC--CCCCCcccccccc
Q 012092 92 DIRKEVQCPICLGIIRK----TRTVMECLHRFCRECIDKAMRLG--NNECPACRTHCAS 144 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~----Pv~v~~CgH~FC~~CI~~~l~~~--~~~CP~Cr~~~~~ 144 (471)
.+.+.+.|+||++.|.+ |+. ++|||+||..||..|+... ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 35577899999999998 885 8999999999999999853 4799999998764
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=8.3e-11 Score=88.32 Aligned_cols=46 Identities=30% Similarity=0.876 Sum_probs=40.1
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhc--CCCCCCcc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRL--GNNECPAC 138 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~--~~~~CP~C 138 (471)
.+.+.+.|+||++.+.+|+. ++|||+||..||..|+.. ....||+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34577899999999999995 899999999999999763 56789998
No 40
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.01 E-value=1.4e-10 Score=92.68 Aligned_cols=50 Identities=24% Similarity=0.615 Sum_probs=42.3
Q ss_pred Cccccccccccccccce--eeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKTR--TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv--~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
...+.|+||++.|..+. .+++|+|.||..||..|+. ....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 35678999999998653 3479999999999999998 45799999999874
No 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.00 E-value=9.5e-11 Score=89.49 Aligned_cols=49 Identities=33% Similarity=0.826 Sum_probs=42.4
Q ss_pred ccccccccccccccce------eeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTR------TVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv------~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+.+.|+||++.+.+|+ .+++|||.||..||..|+.. ...||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 4578999999999872 35899999999999999985 6799999999874
No 42
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.99 E-value=1.4e-10 Score=90.11 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=42.7
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
....|+||++.+.+|+.+++|||.||..||..|+.. ...||+||+.+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456899999999998656999999999999999984 4799999998763
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.98 E-value=3.3e-10 Score=91.76 Aligned_cols=51 Identities=27% Similarity=0.679 Sum_probs=42.4
Q ss_pred cCccccccccccccc--cceeecc--CCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 93 IRKEVQCPICLGIIR--KTRTVME--CLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 93 l~~~l~CpICl~~~~--~Pv~v~~--CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+.+++.||||++.+. +++ +++ |||.||..|+..++......||.||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~-~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDIN-FFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTT-CCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCcccccc-ccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 567889999999885 344 355 999999999999987667899999999874
No 44
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.7e-10 Score=90.23 Aligned_cols=50 Identities=32% Similarity=0.811 Sum_probs=43.8
Q ss_pred ccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+...+.|+||++.+.+ + +++|||.||..||..|+. ....||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-L-ILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-E-EETTTEEECHHHHHHSSC-CCSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-c-ccCCCCcccHHHHHHHHH-CcCcCCCcCCcccC
Confidence 34567899999999999 6 599999999999999998 57899999998874
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.96 E-value=3.2e-10 Score=84.37 Aligned_cols=48 Identities=31% Similarity=0.789 Sum_probs=40.6
Q ss_pred Ccccccccccccccc---ceeecc-CCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRK---TRTVME-CLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~---Pv~v~~-CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.+...|+||++.|.. ++. ++ |||.||..||..|+. ....||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~-~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLG-SHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTT-TCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHH-cCCcCcCCCCEeE
Confidence 456789999999986 664 65 999999999999998 4679999998764
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.3e-10 Score=89.49 Aligned_cols=51 Identities=24% Similarity=0.625 Sum_probs=42.5
Q ss_pred cCcccccccccccccccee--eccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 93 IRKEVQCPICLGIIRKTRT--VMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~--v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+.....|+||++.|..+.. +++|+|.||..||..|+.. ...||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 4456789999999986653 3499999999999999985 4699999998864
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.94 E-value=4.3e-10 Score=87.68 Aligned_cols=49 Identities=33% Similarity=0.828 Sum_probs=40.4
Q ss_pred ccccccccccccc--cceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIR--KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
....|+||++.|. .++.+++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 4568999999886 33445899999999999999985 4689999998863
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=4.4e-10 Score=83.49 Aligned_cols=48 Identities=31% Similarity=0.745 Sum_probs=40.3
Q ss_pred cccccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
....|+||++.|.+ ++.+++|+|.||..||..|+... ..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 35689999999865 34469999999999999999854 89999998764
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.92 E-value=4.4e-10 Score=92.96 Aligned_cols=48 Identities=29% Similarity=0.722 Sum_probs=41.1
Q ss_pred Ccccccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 94 RKEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 94 ~~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.....|+||++.|.. ++ +++|||.||..||..|+. ....||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~-~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVAT-ELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEE-EETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEE-ecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 356789999998876 55 489999999999999998 4679999999875
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.91 E-value=7.6e-10 Score=94.62 Aligned_cols=51 Identities=25% Similarity=0.598 Sum_probs=41.5
Q ss_pred ccccccccccccccce-----------------eeccCCCcchHHHHHHHhh----cCCCCCCccccccccC
Q 012092 95 KEVQCPICLGIIRKTR-----------------TVMECLHRFCRECIDKAMR----LGNNECPACRTHCASR 145 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv-----------------~v~~CgH~FC~~CI~~~l~----~~~~~CP~Cr~~~~~~ 145 (471)
.+..|+||++.|..|. .+++|+|.||..||..|+. .....||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999997654 1589999999999999995 2457999999988644
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=3.7e-10 Score=89.67 Aligned_cols=50 Identities=28% Similarity=0.746 Sum_probs=42.2
Q ss_pred Cccccccccccccccc--eeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKT--RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~P--v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.....|+||++.|..+ +.+++|+|.||..||..|+.. ...||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 3567899999999876 335899999999999999984 5799999998864
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=5.1e-10 Score=84.50 Aligned_cols=45 Identities=22% Similarity=0.743 Sum_probs=39.5
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+.+.|+||++.|.+|+. ++|||+||..||..| ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEE-cCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 56889999999999985 999999999999773 4689999998864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=5.6e-10 Score=89.02 Aligned_cols=49 Identities=27% Similarity=0.635 Sum_probs=42.8
Q ss_pred hhccCccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccccc
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
...+.+.+.|+||++.+.+|++ ++|||. ||..|+..| ..||+||+.+..
T Consensus 18 ~~~~~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 18 LRRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred HhcCccCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3455678899999999999996 899999 999999887 689999998863
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.83 E-value=1.4e-09 Score=94.26 Aligned_cols=49 Identities=33% Similarity=0.856 Sum_probs=43.4
Q ss_pred Cccccccccccccccc-------eeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+.+.|+||++.|.+| + +++|||+||..||..|+. ....||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLK-NANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEE-EETTCCEEEHHHHHHHHT-TCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeE-ecCCCChhhHHHHHHHHH-hCCCCCCCCCcCcc
Confidence 3578999999999998 6 599999999999999998 45799999999874
No 55
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=2.8e-09 Score=85.02 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=41.1
Q ss_pred hccCccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccccc
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..+.+.+.|+||++.+.+|+. ++|||. ||..|+.. ...||+||..+..
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEA-----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred HcCCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence 445677899999999999995 999999 99999964 3689999998864
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.77 E-value=3.8e-09 Score=109.09 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=46.4
Q ss_pred hccCccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccC
Q 012092 91 SDIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASR 145 (471)
Q Consensus 91 ~~l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~ 145 (471)
+.......|+||++.+.+|+. ++|||.||..|+..|+......||+||..+...
T Consensus 327 e~~~~~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 327 EMGSTFQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp HTTTSSSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred hhcCCCCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 344556899999999999995 999999999999999985568999999988753
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=4.8e-09 Score=84.98 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=39.1
Q ss_pred cccccccccccccc--------------ceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRK--------------TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~--------------Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+...|+||++.|.+ ++.+++|+|.||..||.+|+.. ...||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 34569999998876 4443569999999999999984 579999999875
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.62 E-value=1.9e-08 Score=86.05 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=40.8
Q ss_pred ccccccccccccccc-----------------eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKT-----------------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~P-----------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
....|+||++.|..+ +.+++|+|.||..||..|+. ....||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 456799999998865 45589999999999999998 4689999999865
No 59
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=9.6e-09 Score=88.99 Aligned_cols=49 Identities=33% Similarity=0.833 Sum_probs=42.8
Q ss_pred Cccccccccccccccc-------eeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKT-------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~P-------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
...+.|+||++.|.++ + +++|||.||..||.+|+.. ...||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~-~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIV-STECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEE-EETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceE-eCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 3567899999999987 5 5899999999999999984 5799999999874
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.60 E-value=8.9e-09 Score=83.29 Aligned_cols=49 Identities=22% Similarity=0.655 Sum_probs=42.1
Q ss_pred hhccCccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccccc
Q 012092 90 LSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 90 ~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+..+.+...|+||++.+.+++. ++|||. ||..|+..| ..||+||..+..
T Consensus 12 ~~~l~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 12 LRKLKEAMLCMVCCEEEINSTF-CPCGHTVCCESCAAQL-----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred HHcCCCCCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence 3455677899999999999996 999999 999999876 389999998864
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.59 E-value=2e-08 Score=77.82 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=41.3
Q ss_pred ccccccccccccccceeec--cCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVM--ECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~--~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
+...|+||++.+.+++. + +|||. ||..|+..|+. ....||+||+.+.
T Consensus 7 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchh
Confidence 45689999999999985 5 99999 89999999987 4578999999885
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.53 E-value=3.7e-08 Score=76.13 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=40.6
Q ss_pred ccccccccccccccceeec--cCCCc-chHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVM--ECLHR-FCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~--~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
....|+||++.+.+++. + +|||. ||..|+..|+.. ...||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 34579999999999984 5 99998 999999998874 579999999885
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.52 E-value=2.3e-08 Score=77.18 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=43.6
Q ss_pred cccccccccccccceeec-cCCCcchHHHHHHHhhcCCCCCCccccccccCCcCCc
Q 012092 96 EVQCPICLGIIRKTRTVM-ECLHRFCRECIDKAMRLGNNECPACRTHCASRRSLRD 150 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~-~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~ 150 (471)
.+.||||++++.+||. + +|||+||+.||.+|+.. ...||+++.++.. ..+.+
T Consensus 3 ~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~-~~Lip 55 (61)
T 2bay_A 3 HMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI-EEIVE 55 (61)
T ss_dssp -CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG-GGCEE
T ss_pred eEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh-hhcEE
Confidence 4789999999999996 6 99999999999999984 3579999999874 44443
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=2.9e-08 Score=82.29 Aligned_cols=47 Identities=28% Similarity=0.744 Sum_probs=38.9
Q ss_pred ccccccccccccccceee--ccCCCcchHHHHHHHhhc----C---CCCCCc--cccc
Q 012092 95 KEVQCPICLGIIRKTRTV--MECLHRFCRECIDKAMRL----G---NNECPA--CRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v--~~CgH~FC~~CI~~~l~~----~---~~~CP~--Cr~~ 141 (471)
..+.|+||++.+..|+++ .+|||.||..|+..++.. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999988753 379999999999999862 2 358999 9987
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.43 E-value=5.7e-08 Score=99.14 Aligned_cols=50 Identities=26% Similarity=0.665 Sum_probs=43.7
Q ss_pred hhhccCccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccccc
Q 012092 89 KLSDIRKEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 89 ~~~~l~~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.+..+.+.+.|+||++.+.+|++ ++|||. ||..|+..| ..||+||..+..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEE-cCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 34566788999999999999996 899999 999999877 589999998863
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.38 E-value=4.1e-08 Score=85.48 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=0.4
Q ss_pred cccccccccccccc-----------------eeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKT-----------------RTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~P-----------------v~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.-.|+||++.|.++ +..++|+|.||..||..|+.. ...||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 45899999999763 333589999999999999984 679999999865
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2e-07 Score=73.18 Aligned_cols=44 Identities=23% Similarity=0.658 Sum_probs=38.3
Q ss_pred ccccccccccccccceeeccCCCc-chHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHR-FCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~-FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
+...|+||++.+.+++. ++|||. ||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 45689999999999995 999999 99999984 3689999998864
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=4.2e-07 Score=73.80 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=42.5
Q ss_pred ccccccccccccc--cceeeccCC-----CcchHHHHHHHhhcC-CCCCCccccccccCCcCC
Q 012092 95 KEVQCPICLGIIR--KTRTVMECL-----HRFCRECIDKAMRLG-NNECPACRTHCASRRSLR 149 (471)
Q Consensus 95 ~~l~CpICl~~~~--~Pv~v~~Cg-----H~FC~~CI~~~l~~~-~~~CP~Cr~~~~~~~~l~ 149 (471)
....|.||++.+. +++ +++|. |.|+..||.+|+... ...||+||..+.....+.
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence 3457999998774 576 58996 999999999999853 369999999987544443
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.03 E-value=3.6e-06 Score=67.39 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=40.8
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcC-CCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-NNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-~~~CP~Cr~~~~ 143 (471)
....|.||..+|..-.....|+|.|+..||.+||+.. ...||+|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3458999999998666556899999999999999842 378999999875
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.99 E-value=3.7e-06 Score=70.72 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=42.3
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..|++|.-.+..-..++||.|.||..|+..|.+.+...||.|+.++..
T Consensus 2 hfC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 2 HFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CBCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred eecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 369999988887777799999999999999988778899999998864
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.31 E-value=0.00017 Score=55.21 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=38.3
Q ss_pred cccccccccccccceeeccCC--C---cchHHHHHHHhhc-CCCCCCccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECL--H---RFCRECIDKAMRL-GNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~Cg--H---~FC~~CI~~~l~~-~~~~CP~Cr~~~~ 143 (471)
...|.||+....++. +.||. + .|+..|+.+|+.. +...||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 457999998776776 58865 4 7999999999974 5679999999875
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.28 E-value=4.5e-05 Score=77.34 Aligned_cols=49 Identities=18% Similarity=0.558 Sum_probs=37.4
Q ss_pred ccccccccccccc----cee---eccCCCcchHHHHHHHhhcC----------CCCCCcccccccc
Q 012092 96 EVQCPICLGIIRK----TRT---VMECLHRFCRECIDKAMRLG----------NNECPACRTHCAS 144 (471)
Q Consensus 96 ~l~CpICl~~~~~----Pv~---v~~CgH~FC~~CI~~~l~~~----------~~~CP~Cr~~~~~ 144 (471)
...|+||+..+.+ |.. -..|+|.|+..||.+|++.. ...||.|+++++.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3469999998875 321 13799999999999999731 1479999998863
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.26 E-value=0.0026 Score=61.51 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=41.0
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhhcC-CCCCCcccccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLG-NNECPACRTHCAS 144 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~-~~~CP~Cr~~~~~ 144 (471)
...|.||..++..-+.+..|+|.|+..|+..|++.. ...||.|+..+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 567999999998777666799999999999999742 4599999998753
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.09 E-value=0.0067 Score=68.82 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=59.5
Q ss_pred ccCccccccccccccccceeeccCC-CcchHHHHHHHhhcCCCCCCccccccccCCcCCccHHHHHHHHHHc
Q 012092 92 DIRKEVQCPICLGIIRKTRTVMECL-HRFCRECIDKAMRLGNNECPACRTHCASRRSLRDDLNYDALIAALY 162 (471)
Q Consensus 92 ~l~~~l~CpICl~~~~~Pv~v~~Cg-H~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l~ 162 (471)
.+.+.+.|||-++++.+||. ++.| ++|-+.+|.+|+.. ..+||.=|.++.. ..+.||+.|+..|..+.
T Consensus 887 ~iP~~F~cPIs~~lM~DPVi-lpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~-~~liPN~~Lk~~I~~w~ 955 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVI-LPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL-EDVTPNEELRQKILCFK 955 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG-GGCEECHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeE-cCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc-ccccccHHHHHHHHHHH
Confidence 35578999999999999995 8987 69999999999984 6799999999974 67999999999998873
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.80 E-value=0.013 Score=48.29 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=44.1
Q ss_pred ccccccccccc-ccccee-eccCCCcchHHHHHHHhhcCCCCCCccccccc-cCCcCCccHHHHHHHHHHccchhhhH-H
Q 012092 95 KEVQCPICLGI-IRKTRT-VMECLHRFCRECIDKAMRLGNNECPACRTHCA-SRRSLRDDLNYDALIAALYPDIDKYE-E 170 (471)
Q Consensus 95 ~~l~CpICl~~-~~~Pv~-v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~-~~~~l~~n~~l~~li~~l~p~c~~~e-e 170 (471)
+++.|+||.+. +..|+. .+.|+|.||..|+..+...... .=+..+. +..... + -...|..|. +
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~---~~~h~l~~~~~~~~----~------~~~~C~~H~~e 68 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKP---FTGHRLIEPIPDSH----I------RGLMCLEHEDE 68 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSS---STTCCBSSCCCSCC----S------SCCCCSSCSSS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCc---cCCCeeeccccccC----c------cCCcCcCcCCC
Confidence 45789999975 667763 2899999999999984331111 0011111 000000 0 123588994 7
Q ss_pred HHhhcchHHHH
Q 012092 171 EELAFQDEEAA 181 (471)
Q Consensus 171 el~~~ceed~~ 181 (471)
.+.+||.++..
T Consensus 69 ~l~~fC~~~~~ 79 (101)
T 2jun_A 69 KVNMYCVTDDQ 79 (101)
T ss_dssp CCCEEETTTTE
T ss_pred cceEECCCCCC
Confidence 78899987654
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.049 Score=55.72 Aligned_cols=68 Identities=19% Similarity=0.376 Sum_probs=52.1
Q ss_pred cCccccccccccccccceeeccCCCcchHHH--HHHHhh-cCCCCCCccccccccCCcCCccHHHHHHHHHH
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCREC--IDKAMR-LGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~C--I~~~l~-~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
+.-.+.|||-...+..|+.-..|.|.-|..- +..+.. ...+.||+|.+.+.. ..|..|..+..++..+
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~-~dL~ID~~~~~IL~~~ 316 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL-ENLAISEFVDDILQNC 316 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG-GGEEEBHHHHHHHTTS
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCH-HHeeEcHHHHHHHHhc
Confidence 3456999999999999999899999955543 333322 467899999998874 7788898887776544
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.61 E-value=0.061 Score=54.87 Aligned_cols=68 Identities=19% Similarity=0.293 Sum_probs=53.2
Q ss_pred cCccccccccccccccceeeccCCCcchHH--HHHHHhh-cCCCCCCccccccccCCcCCccHHHHHHHHHH
Q 012092 93 IRKEVQCPICLGIIRKTRTVMECLHRFCRE--CIDKAMR-LGNNECPACRTHCASRRSLRDDLNYDALIAAL 161 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv~v~~CgH~FC~~--CI~~~l~-~~~~~CP~Cr~~~~~~~~l~~n~~l~~li~~l 161 (471)
+.-.+.|||-...+..|+.-..|.|.-|.. -+..+.. ...+.||+|.+.+.. ..|..|..+.+++...
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~-~dL~ID~~~~~IL~~~ 282 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY-ESLILDGLFMEILNDC 282 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG-GGEEEBHHHHHHHTTC
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCH-HHeEEcHHHHHHHHhC
Confidence 345789999999999999989999995544 3333332 457899999998874 7899999999888654
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.99 E-value=0.084 Score=43.78 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=37.9
Q ss_pred CccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 94 RKEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
-.-+.|..|-...+.-| ....|.+|..|+..++. .+..||+|+.++..
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLS-VSNRCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCS-SSSEETTTTEECCC
T ss_pred cCcccChhhccccCCee--eecchhhHHHHHHHHHh-hccCCcccCCcCCc
Confidence 34578999988777543 33469999999999888 56899999998864
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.53 E-value=1.7 Score=34.96 Aligned_cols=34 Identities=26% Similarity=0.760 Sum_probs=28.9
Q ss_pred ccccccccccccccceeeccC----CCcchHHHHHHHhh
Q 012092 95 KEVQCPICLGIIRKTRTVMEC----LHRFCRECIDKAMR 129 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~C----gH~FC~~CI~~~l~ 129 (471)
..+.|.+|.+.+.+..+ ..| .|.||..|-...++
T Consensus 14 a~l~CtlC~erLEdtHF-VQCPsv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHF-VQCPSVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CSCCCSSSCSCCSSTTS-EECSSCSSCEECHHHHHHHHH
T ss_pred CeeEeecchhhhccCce-eeCCCccCCeeeccccHHHHH
Confidence 56899999999998776 555 68999999998886
No 80
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=80.74 E-value=1.5 Score=35.91 Aligned_cols=48 Identities=31% Similarity=0.636 Sum_probs=36.3
Q ss_pred cccccccccccc-----cce-eeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 96 EVQCPICLGIIR-----KTR-TVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 96 ~l~CpICl~~~~-----~Pv-~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.-.|.||.+.+- ++. .+..|+-..|+.|+.--.+.++..||.|++.+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 358999998743 111 124688889999998777778899999999875
No 81
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=80.42 E-value=3 Score=35.21 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=59.2
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCc
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDK 438 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
+.+-|-+. ......+|-|++-=.....++||.++..+|-.++.+.+++- ||+.-+..
T Consensus 26 ~~IPVive--~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~a-lfl~vn~~-------------------- 82 (110)
T 2r2q_A 26 DRVPVIVE--KAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDA-LFFFVNNT-------------------- 82 (110)
T ss_dssp TEEEEEEE--ECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSC-CEEEBTTB--------------------
T ss_pred CceEEEEE--ecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCc-EEEEECCE--------------------
Confidence 45444333 33466799999887778889999999999999998877653 44432211
Q ss_pred ceeecccchhhhhccc-cCCCcceeehhh
Q 012092 439 LQVLNEQETLTGLQTQ-NLGHGFLLLAYQ 466 (471)
Q Consensus 439 ~~~l~~~~tl~~l~~~-~~~~~~l~l~y~ 466 (471)
...-+.||++|+.. -..-|.|.|.|.
T Consensus 83 --~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 83 --IPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp --CCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred --ecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 11124589999998 677999999985
No 82
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=80.41 E-value=3.3 Score=35.63 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=60.7
Q ss_pred EEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeec
Q 012092 364 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLN 443 (471)
Q Consensus 364 ~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 443 (471)
-+++=......+|.|.+--.--..++||.++..+|-.++.|.+++- ||+--+.. ...
T Consensus 33 PVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~~----------------------~p~ 89 (119)
T 3h9d_A 33 PIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESA-LFVYTNDT----------------------VLP 89 (119)
T ss_dssp EEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSC-CEEEETTE----------------------ECC
T ss_pred EEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccce-EEEEECCc----------------------CCC
Confidence 3333344577899999998889999999999999999999988774 33321110 112
Q ss_pred ccchhhhhccc-cCCCcceeehhhh
Q 012092 444 EQETLTGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 444 ~~~tl~~l~~~-~~~~~~l~l~y~~ 467 (471)
-+.||++|+.. -..-|.|.|.|..
T Consensus 90 ~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 90 SSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp TTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred ccchHHHHHHHcCCCCCeEEEEEec
Confidence 24689999998 6789999999974
No 83
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=79.80 E-value=3.4 Score=36.09 Aligned_cols=81 Identities=14% Similarity=0.332 Sum_probs=60.9
Q ss_pred EEEeeccccC-CCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee-eecccccCCCCCCCCceeecCCCCcceee
Q 012092 365 LVLVSLDEQR-IPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL-VKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (471)
Q Consensus 365 ~~l~~~d~~~-~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (471)
+++=...... +|.|.|--.--..++||.++..+|-.++.+.+++- ||+ .-+.. ..
T Consensus 38 VIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~a-lFl~~vn~~----------------------~p 94 (130)
T 2zjd_A 38 VIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQA-FFLLVNGHS----------------------MV 94 (130)
T ss_dssp EEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCC-EEEEETTTE----------------------EC
T ss_pred EEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCce-EEEEEECCc----------------------cC
Confidence 3333455777 99999888889999999999999999999988775 555 32211 11
Q ss_pred cccchhhhhccc-cCCCcceeehhhhh
Q 012092 443 NEQETLTGLQTQ-NLGHGFLLLAYQKI 468 (471)
Q Consensus 443 ~~~~tl~~l~~~-~~~~~~l~l~y~~k 468 (471)
.-+.||++|+.. -..-|.|.|.|..-
T Consensus 95 ~~~~~m~~lY~~~kdeDGfLyv~Ys~e 121 (130)
T 2zjd_A 95 SVSTPISEVYESEKDEDGFLYMVYASQ 121 (130)
T ss_dssp CTTSBHHHHHHHHCCTTSCEEEEEEEH
T ss_pred CccchHHHHHHHhCCCCCEEEEEEeCC
Confidence 235679999998 67899999999753
No 84
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=79.63 E-value=3.3 Score=35.43 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=56.9
Q ss_pred eccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchh
Q 012092 369 SLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETL 448 (471)
Q Consensus 369 ~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl 448 (471)
......+|-|++--.....++||.++..+|-.++.+.+++- ||+.-+.. ...-+.||
T Consensus 35 ~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~a-lfl~vn~~----------------------~p~~~~~m 91 (117)
T 1eo6_A 35 KVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKA-IFLFVDKT----------------------VPQSSLTM 91 (117)
T ss_dssp ECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSC-CEEEBTTB----------------------CCCTTSBH
T ss_pred ecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCc-EEEEECCE----------------------ecCccchH
Confidence 34466799999887778889999999999999998877663 44432211 11124589
Q ss_pred hhhccc-cCCCcceeehhhh
Q 012092 449 TGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 449 ~~l~~~-~~~~~~l~l~y~~ 467 (471)
++|+.. -..-|.|.|.|..
T Consensus 92 ~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 92 GQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp HHHHHHHCCTTSCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEEEEeC
Confidence 999998 6779999999974
No 85
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=77.71 E-value=5 Score=32.85 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=58.2
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (471)
|.+.|.+ ...+|-|.+.=.--..++||.++..||-.++.+.+++- ||+=-+. . . -|+
T Consensus 6 v~v~fk~--~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~a-lFlyVnn--~-~----------~P~------- 62 (91)
T 4gdk_A 6 IDILLKA--VGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQ-LFIYVNQ--S-F----------APS------- 62 (91)
T ss_dssp EEEEEEE--CSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSC-CEEEETT--T-B----------CCC-------
T ss_pred EEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCe-EEEEECC--c-c----------CCC-------
Confidence 3444444 55789999998888999999999999999999977654 3332111 0 0 011
Q ss_pred cccchhhhhccc-cCCCcceeehhhh
Q 012092 443 NEQETLTGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 443 ~~~~tl~~l~~~-~~~~~~l~l~y~~ 467 (471)
-++|++.|+.. . ..|.|+|.|..
T Consensus 63 -~d~~~~~Ly~~~k-~DGfLyv~Ys~ 86 (91)
T 4gdk_A 63 -PDQEVGTLYECFG-SDGKLVLHYCK 86 (91)
T ss_dssp -TTCBHHHHHHHHC-BTTEEEEEEES
T ss_pred -hhhHHHHHHHHhC-CCCEEEEEEeC
Confidence 25689999998 6 79999999964
No 86
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=76.00 E-value=5.1 Score=34.38 Aligned_cols=79 Identities=15% Similarity=0.315 Sum_probs=59.3
Q ss_pred EEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeeccc
Q 012092 366 VLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQ 445 (471)
Q Consensus 366 ~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 445 (471)
++-......+|.|.+--.--..++||.++..+|-.++.+.+++- ||+--+. . . |+ -+
T Consensus 34 IvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~a-lFl~Vn~--~--~----------p~--------~~ 90 (118)
T 3rui_B 34 ICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKA-IFIFVND--T--L----------PP--------TA 90 (118)
T ss_dssp EEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCC-EEEEBTT--B--C----------CC--------TT
T ss_pred EEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCcc-EEEEECC--c--c----------CC--------cc
Confidence 33344577899999987789999999999999999999988774 4443111 1 1 11 23
Q ss_pred chhhhhccc-cCCCcceeehhhh
Q 012092 446 ETLTGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 446 ~tl~~l~~~-~~~~~~l~l~y~~ 467 (471)
.||++|+.. -..-|.|.|.|..
T Consensus 91 ~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 91 ALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp SBHHHHHHHHCCTTSCEEEEEEE
T ss_pred chHHHHHHHcCCCCCeEEEEEec
Confidence 589999998 6789999999964
No 87
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=74.59 E-value=5.3 Score=33.04 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=56.9
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCc
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDK 438 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
.++.|+|.-+ ..+|-|++.=.....+++|.++..||-.++.+. =||+--+.. . -|
T Consensus 12 ~KV~V~~~~~----~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~----alFlyvn~~---~----------~P---- 66 (96)
T 1wz3_A 12 QKIVVHLRAT----GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD----SLFVYVNSA---F----------SP---- 66 (96)
T ss_dssp CEEEEEEEEC----TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS----SCEEEEEEE---E----------CC----
T ss_pred CeEEEEEEEC----CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc----eEEEEECCc---c----------cC----
Confidence 3544444444 348999999999999999999999999999886 344432210 0 11
Q ss_pred ceeecccchhhhhccc-cCCCcceeehhhh
Q 012092 439 LQVLNEQETLTGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 439 ~~~l~~~~tl~~l~~~-~~~~~~l~l~y~~ 467 (471)
.-++|+++|+.. .. .|.|.|.|..
T Consensus 67 ----s~d~~m~~LY~~~kd-DGfLyi~Ys~ 91 (96)
T 1wz3_A 67 ----NPDESVIDLYNNFGF-DGKLVVNYAC 91 (96)
T ss_dssp ----CTTSBHHHHHHHHCB-TTBEEEEEES
T ss_pred ----ChhhHHHHHHHHhCC-CCEEEEEEeC
Confidence 124789999998 55 9999999964
No 88
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=69.39 E-value=8.5 Score=33.36 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=58.4
Q ss_pred eccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceeecccchh
Q 012092 369 SLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVLNEQETL 448 (471)
Q Consensus 369 ~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~tl 448 (471)
......+|.|.+-=.--..++||.++..+|-.++.|.+++- ||+--+. . ...-+.||
T Consensus 43 r~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~a-lFl~Vnn-~---------------------lPs~s~~m 99 (125)
T 3m95_A 43 KAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDA-LFFFVNN-V---------------------IPPTSATM 99 (125)
T ss_dssp ECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSC-CEEEBTT-B---------------------CCCTTSBH
T ss_pred ecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCcccc-EEEEECC-c---------------------cCCccchH
Confidence 44577799999887788899999999999999999988874 4432111 1 11224689
Q ss_pred hhhccc-cCCCcceeehhhhh
Q 012092 449 TGLQTQ-NLGHGFLLLAYQKI 468 (471)
Q Consensus 449 ~~l~~~-~~~~~~l~l~y~~k 468 (471)
++|+.. -..-|.|.|.|..-
T Consensus 100 ~~lY~~~kdeDGfLY~~Ys~e 120 (125)
T 3m95_A 100 GSLYQEHHDEDFFLYIAFSDE 120 (125)
T ss_dssp HHHHHHHCCTTSCEEEEEESS
T ss_pred HHHHHHcCCCCCeEEEEecCc
Confidence 999998 67899999999753
No 89
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=59.97 E-value=7.8 Score=29.66 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=32.6
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTHC 142 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~ 142 (471)
...|.||.+- .+-+..-.|...|+..|+...+. .+...||.|....
T Consensus 12 ~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3469999864 23333456889999999976665 2457999997654
No 90
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.29 E-value=6.9 Score=29.54 Aligned_cols=41 Identities=24% Similarity=0.599 Sum_probs=29.1
Q ss_pred ccccccccccccc--eeeccCCCcchHHHHHHHhhcCCCCCCcc
Q 012092 97 VQCPICLGIIRKT--RTVMECLHRFCRECIDKAMRLGNNECPAC 138 (471)
Q Consensus 97 l~CpICl~~~~~P--v~v~~CgH~FC~~CI~~~l~~~~~~CP~C 138 (471)
..|--|+..|.+. .....|++.||..|=. ++......||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCC
Confidence 4588898888543 2356899999999943 333445689988
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=56.15 E-value=2.6 Score=28.46 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=12.4
Q ss_pred cccccccccccccccee
Q 012092 95 KEVQCPICLGIIRKTRT 111 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~ 111 (471)
+.|.||||+..|..+-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35788888888876653
No 92
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=53.18 E-value=17 Score=29.70 Aligned_cols=77 Identities=13% Similarity=0.172 Sum_probs=49.0
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCCCCcceee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPCKDKLQVL 442 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 442 (471)
|.+.+.+ ...+|-|++.=..-..++||.++..||-.++.+ +-|=+||- . . . -|+
T Consensus 9 v~vrfk~--~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVN--n--~-f----------~Ps------- 62 (91)
T 3w1s_C 9 IQIKFQP--IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYIN--N--S-F----------APS------- 62 (91)
T ss_dssp EEEEEEE--CCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEET--T--T-B----------CCC-------
T ss_pred EEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEEC--C--c-c----------CCC-------
Confidence 4444455 567899999888899999999999999999998 23323331 1 0 0 021
Q ss_pred cccchhhhhccc-cCCCcceeehhhh
Q 012092 443 NEQETLTGLQTQ-NLGHGFLLLAYQK 467 (471)
Q Consensus 443 ~~~~tl~~l~~~-~~~~~~l~l~y~~ 467 (471)
-++|++.|+.. . ..|.|++.|..
T Consensus 63 -~d~~~~~Ly~~fk-~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 63 -PQQNIGELWMQFK-TNDELIVSYCA 86 (91)
T ss_dssp -TTSBHHHHHHHHC-BTTEEEEEEEC
T ss_pred -cccHHHHHHHHhC-CCCEEEEEEeC
Confidence 24689999998 5 69999999964
No 93
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.68 E-value=30 Score=28.58 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=34.7
Q ss_pred cCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceee
Q 012092 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEI 411 (471)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~ 411 (471)
...|.|.++ .+.++++. |.|.|+.||..|-+-||.+..++++++=|
T Consensus 26 ~~mm~I~VK--tl~Gk~i~------lev~p~dTV~~lK~~Ia~k~Gip~~qQrL 71 (100)
T 1uh6_A 26 ATMIEVVCN--DRLGKKVR------VKCNTDDTIGDLKKLIAAQTGTRWNKIVL 71 (100)
T ss_dssp CCEEEEEEE--CSSSSCEE------EEEETTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred CCeEEEEEE--CCCCCEEE------EEeCCCCcHHHHHHHHHHHhCCCHHHEEE
Confidence 334555554 44455444 89999999999999999999998888743
No 94
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=48.93 E-value=2.4 Score=38.06 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=31.1
Q ss_pred ccccccccccccc----cceeeccCCCcchHHHHHHHhh-cCCCCCCccccc
Q 012092 95 KEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMR-LGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~-~~~~~CP~Cr~~ 141 (471)
..-.|.+|...|. ..+.+..|.|.+|..|-. |.. .....|-+|.+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 4678999998764 334457899999999963 222 234567777653
No 95
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.63 E-value=7.4 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.526 Sum_probs=23.3
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHHH
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (471)
...|.+|...|. ....+-.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 357999988775 23345679999999996543
No 96
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=46.61 E-value=15 Score=29.80 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=31.7
Q ss_pred cCccccccccccccccce-eeccCCCcchHHHHHHH------------hh---cCCCCCCcccc
Q 012092 93 IRKEVQCPICLGIIRKTR-TVMECLHRFCRECIDKA------------MR---LGNNECPACRT 140 (471)
Q Consensus 93 l~~~l~CpICl~~~~~Pv-~v~~CgH~FC~~CI~~~------------l~---~~~~~CP~Cr~ 140 (471)
+..+-.|.||...-..-. .+--|+-.|+..|+.+. +. .....||.|..
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 446678999985443221 12348899999999986 11 12458999954
No 97
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=46.35 E-value=20 Score=27.39 Aligned_cols=32 Identities=6% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.+.|+.||..|-+.|+.++.++++++-++.
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~ 48 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE
Confidence 36788999999999999999999998886554
No 98
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=45.93 E-value=13 Score=31.15 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=36.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.-+.|..|...|........=|..||..|..+.+ ...|..|..+|..
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDP 75 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCc
Confidence 4589999999887533335568889999987754 3689999998873
No 99
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=44.59 E-value=21 Score=27.14 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=27.6
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.+.|+.||..|-+.|+.++.++++++-++.
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 47788999999999999999999988876553
No 100
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=43.56 E-value=15 Score=27.33 Aligned_cols=45 Identities=22% Similarity=0.539 Sum_probs=31.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~ 140 (471)
....|.||... -+-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 10 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34579999873 23333346788899999987443 35679999975
No 101
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=42.94 E-value=11 Score=29.06 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=33.4
Q ss_pred cccccccccccccc--ceeeccCCCcchHHHHHHHhh---cCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMR---LGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~~ 143 (471)
+...|+||...... -+..-.|..-|+..|+..... .+...||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34679999876543 233346888899999865433 14578999987654
No 102
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.97 E-value=51 Score=27.91 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=34.3
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
..|.|.+..+ ++.+ .|.+.|+.||..|.+.|+.++.++++.+-|+.
T Consensus 31 ~~m~I~Vk~~---g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 76 (125)
T 1j8c_A 31 KIIKVTVKTP---KEKE------EFAVPENSSVQQFKEAISKRFKSQTDQLVLIF 76 (125)
T ss_dssp CCEEEEEECS---SCEE------EEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE
T ss_pred CcEEEEEEeC---CeEE------EEEECCCCcHHHHHHHHHHHHCcCcceEEEEE
Confidence 4566666543 3322 47788999999999999999999888876543
No 103
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=41.61 E-value=4 Score=32.69 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.6
Q ss_pred cccccccccc-----cceeeccCCCcchHHHHHHH
Q 012092 98 QCPICLGIIR-----KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 98 ~CpICl~~~~-----~Pv~v~~CgH~FC~~CI~~~ 127 (471)
-||-|...+. .++....|++.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 4888876553 23554469999999998777
No 104
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=40.66 E-value=8.1 Score=32.54 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=22.1
Q ss_pred cccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 104 GIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 104 ~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.++..|..+..||+.|+ .-+. ....||.|+....
T Consensus 62 ~L~v~p~~C~~CG~~F~-----~~~~-kPsrCP~CkSe~I 95 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVFK-----AEIN-IPSRCPKCKSEWI 95 (105)
T ss_dssp EEEECCCBBTTTCCBCC-----CCSS-CCSSCSSSCCCCB
T ss_pred EEEEECcChhhCcCeec-----ccCC-CCCCCcCCCCCcc
Confidence 34445555789999992 1122 3578999997544
No 105
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=40.58 E-value=33 Score=25.23 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=27.8
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|-+.|+.++.++++.+-++.
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 47788999999999999999999888876554
No 106
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.29 E-value=10 Score=35.40 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=23.5
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHH
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (471)
+...|.+|...|. ....+-.||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 3458999988765 3334567999999999654
No 107
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=39.95 E-value=11 Score=30.17 Aligned_cols=46 Identities=17% Similarity=0.444 Sum_probs=34.6
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
.-|.|..|...|........=+..||..|..+.+ ...|..|..+|.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 4589999998887543334557889999986543 468999999886
No 108
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=39.87 E-value=3.5 Score=31.11 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=23.3
Q ss_pred cccccccccccc-----cceeecc--CCCcchHHHHHHHhh
Q 012092 96 EVQCPICLGIIR-----KTRTVME--CLHRFCRECIDKAMR 129 (471)
Q Consensus 96 ~l~CpICl~~~~-----~Pv~v~~--CgH~FC~~CI~~~l~ 129 (471)
.-.||-|...+. +-++... |++.||..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 347898887776 2333334 888888888877754
No 109
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=39.86 E-value=15 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=22.1
Q ss_pred ccccccccccc---cceeeccCCCcchHHHHHH
Q 012092 97 VQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (471)
Q Consensus 97 l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (471)
-.|.+|...|. .....-.||..||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 47999988765 2334467999999999643
No 110
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.19 E-value=2.7 Score=35.01 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=27.6
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCA 143 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~ 143 (471)
..||+|...+.. . =++.+|..|-..+.. ...||.|.+++.
T Consensus 33 ~~CP~Cq~eL~~-~----g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ-D----NGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE-E----TTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCccee-c----CCEEECccccchhhc--cccCcchhhHHH
Confidence 899999987652 1 134458888655433 358999988764
No 111
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=38.88 E-value=4.9 Score=31.81 Aligned_cols=33 Identities=33% Similarity=0.640 Sum_probs=22.8
Q ss_pred cccccc--cccccc-----cceeec-----cCCCcchHHHHHHHh
Q 012092 96 EVQCPI--CLGIIR-----KTRTVM-----ECLHRFCRECIDKAM 128 (471)
Q Consensus 96 ~l~CpI--Cl~~~~-----~Pv~v~-----~CgH~FC~~CI~~~l 128 (471)
..-||- |...+. ..+... .|++.||..|-..|-
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 446876 766553 234433 699999999998874
No 112
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.45 E-value=33 Score=27.12 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=34.4
Q ss_pred ccCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 357 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 357 ~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
....|.|++... ++.+ .|.+.|+.||..|.+.|+.++.++++.+-|+
T Consensus 14 ~~~~m~i~Vk~~---g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 60 (96)
T 1wx8_A 14 SSRIIRVSVKTP---QDCH------EFFLAENSNVRRFKKQISKYLHCNADRLVLI 60 (96)
T ss_dssp CSCEEEEEEECS---SSEE------EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE
T ss_pred CCCcEEEEEEEC---CeEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 345566665543 4433 4788899999999999999999888777554
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=38.40 E-value=14 Score=29.35 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=23.9
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHH
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (471)
+...|.+|...|. .....-.||+.||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3457999988765 33344679999999997543
No 114
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.98 E-value=14 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=23.1
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHHH
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (471)
...|.+|...|. .......||+.||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 457999987665 23344679999999997543
No 115
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.86 E-value=7.1 Score=29.19 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=31.3
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHHhh----cCCCCCCccccc
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMR----LGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~Cr~~ 141 (471)
+...|+||...+. ..|..-.|..-|+..|+.-... .....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999998763 2344446777888888753221 245789999764
No 116
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.76 E-value=12 Score=35.12 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=23.3
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHHH
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (471)
.-.|.+|...|. ....+-.||+.||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 347999987665 33345689999999997543
No 117
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.75 E-value=14 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.601 Sum_probs=23.7
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHH
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~ 127 (471)
+...|.+|...|. .....-.||..||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 3457999988775 23344679999999997543
No 118
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.26 E-value=21 Score=29.80 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=36.0
Q ss_pred cccccccccccccc--ceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRK--TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~--Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..|.|..|...|.+ ......=+..||..|..+.+. ....|..|..+|..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 45899999998862 222355678899999988765 22379999998874
No 119
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=36.94 E-value=7.1 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=32.6
Q ss_pred ccccccccccccc----cceeeccCCCcchHHHHHHHh------hcCCCCCCccccccc
Q 012092 95 KEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAM------RLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l------~~~~~~CP~Cr~~~~ 143 (471)
....|.||..... .-+..-.|...|+..|+..-+ -.+...||.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 4567999987632 233334688889999987533 235678999976543
No 120
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=36.85 E-value=14 Score=28.61 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=23.7
Q ss_pred cccccccccccccceeeccC-CCcchHHHHHHHh
Q 012092 96 EVQCPICLGIIRKTRTVMEC-LHRFCRECIDKAM 128 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~C-gH~FC~~CI~~~l 128 (471)
..-|-||.+.- .+.++.| +-.||..|+.+.-
T Consensus 8 ~pWC~ICneDA--tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 8 LPWCCICNEDA--TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CSSCTTTCSCC--CEEETTTTSEEECSSHHHHHT
T ss_pred CCeeEEeCCCC--eEEecCCCCceehHHHHHHHc
Confidence 34699999872 2456789 7899999998765
No 121
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=36.73 E-value=12 Score=31.23 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=11.0
Q ss_pred cchHHHHHHHhh
Q 012092 118 RFCRECIDKAMR 129 (471)
Q Consensus 118 ~FC~~CI~~~l~ 129 (471)
.||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999987
No 122
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.62 E-value=24 Score=31.19 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=29.5
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHh----------hcCCCCCCcccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAM----------RLGNNECPACRT 140 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l----------~~~~~~CP~Cr~ 140 (471)
+..|.||.+-=. -+..-.|-..||..||..-+ ..+.+.||.|..
T Consensus 63 ~d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356888875322 11224688899999998654 235679999974
No 123
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=36.41 E-value=12 Score=31.13 Aligned_cols=12 Identities=42% Similarity=1.068 Sum_probs=11.0
Q ss_pred cchHHHHHHHhh
Q 012092 118 RFCRECIDKAMR 129 (471)
Q Consensus 118 ~FC~~CI~~~l~ 129 (471)
.||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 599999999987
No 124
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.82 E-value=11 Score=41.94 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=36.8
Q ss_pred Cccccccccccccccce---------eeccCCCcc--------------------hHHHHHHHhhc-------CCCCCCc
Q 012092 94 RKEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPA 137 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 137 (471)
.+.-+|+-|+..+.+|. .++.||.+| |..|-.++-.. ....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 35668999998777653 456788876 99999988642 2348999
Q ss_pred cccccc
Q 012092 138 CRTHCA 143 (471)
Q Consensus 138 Cr~~~~ 143 (471)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 987654
No 125
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=35.63 E-value=15 Score=31.53 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=29.4
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHHhhcCCCCCCcccccc
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMRLGNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~ 142 (471)
....|..|...|. .-..+-.||..||..|....+. ....|-.|-...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-GPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-CceECHHHHHHH
Confidence 4457999988765 2334568999999999765443 245677775543
No 126
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=34.99 E-value=43 Score=24.57 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=27.6
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|-+.|+.++.++++.+-++.
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHEEEEE
Confidence 47788999999999999999999888876553
No 127
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=34.38 E-value=33 Score=26.77 Aligned_cols=48 Identities=21% Similarity=0.138 Sum_probs=35.2
Q ss_pred cCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
+.+|.|.+.. ++++.+ .|.+.|+.||..|-+.|+.++.+++++.-++.
T Consensus 2 ~~~m~I~Vk~--~~g~~~------~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 2 DEPLSILVRN--NKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CCEEEEEEEE--TTSCEE------EEEEESSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CccEEEEEEC--CCCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 4455555544 345433 47788999999999999999999888876553
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.02 E-value=15 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.538 Sum_probs=22.3
Q ss_pred cccccccccccc---cceeeccCCCcchHHHHHH
Q 012092 96 EVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (471)
Q Consensus 96 ~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (471)
...|.+|...|. .....-.||..||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 347999988765 2234467999999999643
No 129
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=33.95 E-value=12 Score=33.86 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=30.4
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTHC 142 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~ 142 (471)
-.|.||..- -+-+.+-.|...|+..|+..-+. .+...||.|+..-
T Consensus 5 ~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 469999854 22333346888899999866544 2457899998753
No 130
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.76 E-value=8.7 Score=39.01 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=0.0
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHHh
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAM 128 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l 128 (471)
....|.+|...|. ....+..||+.||..|....+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp -------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3457999988765 223346799999999986543
No 131
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.63 E-value=17 Score=28.72 Aligned_cols=32 Identities=25% Similarity=0.569 Sum_probs=22.7
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHH
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDK 126 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~ 126 (471)
....|.+|...|. .....-.||..||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 3457999988764 2233457999999999643
No 132
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=33.61 E-value=40 Score=26.30 Aligned_cols=44 Identities=9% Similarity=0.251 Sum_probs=34.1
Q ss_pred EEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 364 HLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 364 ~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
++.+..++++++ .|.+.|+.||..|.+-|+.++.++++.+-++.
T Consensus 11 ~i~v~~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 11 QLFIKTLTGKTF------TVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EEEEEETTSCEE------EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEEEeCCCCEE------EEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 444555666643 47788999999999999999999888876554
No 133
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=33.36 E-value=50 Score=24.43 Aligned_cols=32 Identities=6% Similarity=0.150 Sum_probs=27.8
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|.+.|+.++.++++.+-++.
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 48 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQRLIY 48 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE
Confidence 47888999999999999999999988886553
No 134
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.21 E-value=13 Score=40.75 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=36.0
Q ss_pred Cccccccccccccccce---------eeccCCCcc--------------------hHHHHHHHhhc-------CCCCCCc
Q 012092 94 RKEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPA 137 (471)
Q Consensus 94 ~~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~ 137 (471)
.+.-+|+-|+..+.+|. .++.||.+| |..|..++-.. ....||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 35668999998777643 456788776 99999988642 2358999
Q ss_pred ccccc
Q 012092 138 CRTHC 142 (471)
Q Consensus 138 Cr~~~ 142 (471)
|.-.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 97765
No 135
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=32.78 E-value=44 Score=26.16 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=27.7
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.+.|+.||..|-+.|+..+.++++.+-|+.
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 36788999999999999999999998886554
No 136
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.39 E-value=15 Score=32.11 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=29.3
Q ss_pred ccccccccccccc----cceeeccCCCcchHHHHHHHhh---cCCCCCCcccc
Q 012092 95 KEVQCPICLGIIR----KTRTVMECLHRFCRECIDKAMR---LGNNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~~~----~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~ 140 (471)
..-.|.+|...|. ....+..|.|.+|..|-..... .....|-+|++
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 3468999998773 2334567899999988543211 12346777765
No 137
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=32.15 E-value=44 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=34.6
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
..|.|++.. ++++++ .|.+.|+.||.+|-+.|+..+.+++++.-++.
T Consensus 4 ~~m~i~Vk~--~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 4 DSLEVLVKT--LDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp CEEEEEEEE--TTCCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cEEEEEEEc--CCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 455555544 345432 47888999999999999999999888875543
No 138
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=32.05 E-value=11 Score=28.12 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=29.8
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTH 141 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~ 141 (471)
...|.||... -+-+..-.|...|+..|+..-+. .+...||.|...
T Consensus 9 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4569999863 22232345777899999875443 245789999764
No 139
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.28 E-value=55 Score=24.47 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=33.7
Q ss_pred ceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 360 QLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 360 e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.|.+. .++++.+ .+.+.|+.||..|.+.|+.++.++++.+-++.
T Consensus 7 ~m~i~vk--~~~g~~~------~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 7 GMQLTVK--ALQGREC------SLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp SEEEEEE--ETTSCEE------EEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred cEEEEEE--eCCCCEE------EEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 4555554 4445433 36788999999999999999998888776543
No 140
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.18 E-value=52 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.5
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|-+.|+.++.++++.+-++.
T Consensus 21 ~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 52 (87)
T 1wh3_A 21 AYAINPNSFILGLKQQIEDQQGLPKKQQQLEF 52 (87)
T ss_dssp EEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE
T ss_pred EEEeCCCChHHHHHHHHHHHhCCChHHEEEEE
Confidence 47788999999999999999999888876553
No 141
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=30.89 E-value=14 Score=41.08 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=35.6
Q ss_pred ccccccccccccccce---------eeccCCCcc--------------------hHHHHHHHhhc-------CCCCCCcc
Q 012092 95 KEVQCPICLGIIRKTR---------TVMECLHRF--------------------CRECIDKAMRL-------GNNECPAC 138 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv---------~v~~CgH~F--------------------C~~CI~~~l~~-------~~~~CP~C 138 (471)
+.-.|+-|+..+.+|. .++.||.+| |..|..++-.. ....||.|
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~C 189 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDC 189 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCcc
Confidence 5568999998777653 456788665 99999988641 23579999
Q ss_pred ccccc
Q 012092 139 RTHCA 143 (471)
Q Consensus 139 r~~~~ 143 (471)
.-.+.
T Consensus 190 GP~l~ 194 (761)
T 3vth_A 190 GPSLS 194 (761)
T ss_dssp SCCEE
T ss_pred CCeeE
Confidence 87654
No 142
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.14 E-value=7.9 Score=38.50 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=32.1
Q ss_pred ccccccccccccccceeec----cCC--CcchHHHHHHHhhcCCCCCCccccc
Q 012092 95 KEVQCPICLGIIRKTRTVM----ECL--HRFCRECIDKAMRLGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~----~Cg--H~FC~~CI~~~l~~~~~~CP~Cr~~ 141 (471)
..-.||||.....-.+ +. .=| +.+|..|-..|-- ....||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~-l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGM-IRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEE-EEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeE-EeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 3578999998766544 22 124 4579999988865 45799999875
No 143
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=30.07 E-value=49 Score=25.26 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=33.8
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
..|.|++. .++++.+ .|.+.|+.||..|-+.|+..+.++++..-|+
T Consensus 11 ~~m~i~vk--~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 56 (88)
T 3dbh_I 11 GSMLIKVK--TLTGKEI------EIDIEPTDKVERIKERVEEKEGIPPQQQRLI 56 (88)
T ss_dssp CCEEEEEE--CTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCCEE
T ss_pred CcEEEEEE--cCCCCEE------EEEECCCCCHHHHHHHHHHHHCcCHHHEEEE
Confidence 44555554 4455533 4788899999999999999999988877543
No 144
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=30.07 E-value=53 Score=24.65 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=34.3
Q ss_pred cCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
+.+|.|++. .++++++ .|.+.|+.||..|-+.|+..+.+++++.-++
T Consensus 2 ~~~m~i~Vk--~~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 48 (79)
T 3phx_B 2 DEPLSILVR--NNKGRSS------TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (79)
T ss_dssp -CCEEEEEE--CTTSCEE------EEEECTTSBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCCEEEEEE--eCCCCEE------EEEECCcChHHHHHHHHHhhcCCCHHHEEEE
Confidence 345555554 3445533 3788899999999999999999998887554
No 145
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=29.95 E-value=48 Score=26.40 Aligned_cols=49 Identities=4% Similarity=0.133 Sum_probs=34.5
Q ss_pred cccCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 356 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 356 e~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
..+..|.|++..+ +++.+ .|.+.|+.||..|-+.|+.++.+++++.-|+
T Consensus 18 ~~~~~m~I~Vk~~--~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi 66 (98)
T 4hcn_B 18 FQGRPMQIFVKTL--TGKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 66 (98)
T ss_dssp ----CCEEEEEET--TCCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCCCeEEEEEEeC--CCCEE------EEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 4445666666553 45533 3678899999999999999999988887544
No 146
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=29.35 E-value=54 Score=26.94 Aligned_cols=46 Identities=9% Similarity=0.265 Sum_probs=34.0
Q ss_pred ceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 360 QLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 360 e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.|++ -.++++.+ .|.+.|+.||..|-+.|+.++.++++..-++.
T Consensus 35 ~m~I~V--k~~~G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 80 (111)
T 3vdz_A 35 AMQIFV--KTLTGKTI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp CEEEEE--ECSSSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred cEEEEE--EeCCCCEE------EEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE
Confidence 344444 44556543 47889999999999999999999888875543
No 147
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.30 E-value=32 Score=24.28 Aligned_cols=43 Identities=30% Similarity=0.600 Sum_probs=27.9
Q ss_pred cccccccccc--cceeeccCCCcchHHHHHHHhh---cCCCCCCcccc
Q 012092 98 QCPICLGIIR--KTRTVMECLHRFCRECIDKAMR---LGNNECPACRT 140 (471)
Q Consensus 98 ~CpICl~~~~--~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~ 140 (471)
.|.||...-. .-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 4888875432 2233346888899999965443 24568999965
No 148
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=29.22 E-value=15 Score=33.95 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=30.5
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTHC 142 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~ 142 (471)
-.|.+|..-= +-+.+-.|...|+..|+..-+. .+.+.||.|+..-
T Consensus 8 ~~C~~C~~~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4599998542 2233346888899999866543 3457999998754
No 149
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.13 E-value=45 Score=24.65 Aligned_cols=35 Identities=14% Similarity=0.355 Sum_probs=23.9
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.-|.|..|...|........=+..||..|..+.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 45788888877764333344577888888877665
No 150
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=28.08 E-value=46 Score=29.28 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=35.4
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.-|.|..|...|..... ..=|..||..|..+.+. ..|..|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCE-ESSSCEECHHHHHHHHS---CBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCc-ccCCeeeeccccccccc---ccccccccccCC
Confidence 56899999988876544 44578899999887654 579999888753
No 151
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=27.78 E-value=57 Score=25.10 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=35.0
Q ss_pred cCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 358 DDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 358 ~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
...|.|++.. ++++++ .+.+.|+.||.+|-+.|+.++.+++++.-++
T Consensus 15 ~~~m~i~Vk~--~~g~~~------~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi 61 (88)
T 4eew_A 15 PDSLEVLVKT--LDSQTR------TFIVGAQMNVKEFKEHIAASVSIPSEKQRLI 61 (88)
T ss_dssp CCEEEEEEEE--TTSCEE------EEEEETTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CCeEEEEEEc--CCCCEE------EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 3456665554 445532 4678899999999999999999998887544
No 152
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=27.47 E-value=60 Score=26.84 Aligned_cols=47 Identities=4% Similarity=0.150 Sum_probs=37.6
Q ss_pred CceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 359 DQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 359 ~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.||.|.+..+. ++.+ .|.+.|+.||..|-+-|+.++.++++++-|+.
T Consensus 8 ~~~~i~vk~l~--G~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 54 (114)
T 2kdi_A 8 GEFQIFAKTLT--GKTI------TLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW 54 (114)
T ss_dssp CCCEEEEEETT--CCEE------EEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CcEEEEEEeCC--CcEE------EEEECCCCcHHHHHHHHHHHHCcChHHEEEEE
Confidence 57777777654 5433 36788999999999999999999999987654
No 153
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=27.20 E-value=27 Score=31.46 Aligned_cols=48 Identities=15% Similarity=0.390 Sum_probs=35.8
Q ss_pred cccccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
..|.|..|...|.. +.. ..=+..||..|..+.+. ....|+.|...+..
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~-~~~g~~yC~~cy~~~~~-~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFG-NSGACSACGQSIPA 81 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEE-EETTEEECHHHHHHHHS-CCEECTTTCCEECT
T ss_pred cCcccCCCCcccccCCceEE-EeCCccccccccccccc-cCCccccCCCcccc
Confidence 56899999998875 443 45578899999987664 11279999998863
No 154
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=27.16 E-value=67 Score=25.00 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=35.6
Q ss_pred ccCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 357 KDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 357 ~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
....|.|++. .++++++ .|.+.|+.||..|-+.|+..+.++++.+-++.
T Consensus 14 ~~~~m~i~Vk--~~~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 62 (91)
T 3v6c_B 14 PRGSMQIFVN--TLTGTHI------TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 62 (91)
T ss_dssp CCCSEEEEEE--CTTSCEE------EEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred CCCeEEEEEE--eCCCCEE------EEEECCCCCHHHHHHHHHhhhCCChhhEEEEE
Confidence 3445555554 3455543 47788999999999999999999888875443
No 155
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=26.56 E-value=63 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=27.4
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.|.+.|+.||..|-+.|+..+.+++++.-|+.
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 45 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEEEEE
Confidence 46888999999999999999999988875543
No 156
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=25.45 E-value=39 Score=30.11 Aligned_cols=46 Identities=17% Similarity=0.366 Sum_probs=34.0
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.-|.|..|...|..... ..=|..||..|..+.+. ..|..|...+..
T Consensus 86 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~---~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFG---TKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTS---CCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCce-eECCEeeecCccccccc---cccccCCCccCC
Confidence 55889999888875443 34477899999876543 589999988764
No 157
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=25.02 E-value=80 Score=24.92 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=28.2
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|.+.|+.++.++++.+-++.
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 47788999999999999999999998887654
No 158
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.96 E-value=54 Score=27.17 Aligned_cols=44 Identities=18% Similarity=0.450 Sum_probs=28.6
Q ss_pred ccccccccccc--------ccceeeccCCCcchHHHHHH------HhhcCCCCCCccc
Q 012092 96 EVQCPICLGII--------RKTRTVMECLHRFCRECIDK------AMRLGNNECPACR 139 (471)
Q Consensus 96 ~l~CpICl~~~--------~~Pv~v~~CgH~FC~~CI~~------~l~~~~~~CP~Cr 139 (471)
...|.+|+..- .+-+....|+..|+..|+.. .+......||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45688887641 13334457999999999842 2334567888885
No 159
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=24.82 E-value=78 Score=26.00 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=27.1
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
|.+.|+.||..|-+.|+..+.++++..-++.
T Consensus 50 l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 50 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp EEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 7889999999999999999998888776554
No 160
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.75 E-value=46 Score=27.21 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=50.0
Q ss_pred cccCceeEEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeeeeecccccCCCCCCCCceeecCC
Q 012092 356 EKDDQLDMHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYLVKELHSKINLPSSSNSLMIDPC 435 (471)
Q Consensus 356 e~~~e~~~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (471)
...-+|.|+++-. .++ +--+.|-|+-||..|-+-||.|..++++++-+ .+.
T Consensus 17 ~~~~mIqI~Vk~~--~Gk------k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL--if~------------------- 67 (93)
T 3plu_A 17 RGSHMIEVVVNDR--LGK------KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL--QKG------------------- 67 (93)
T ss_dssp ---CEEEEEEECT--TSC------EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE--EET-------------------
T ss_pred CCCceEEEEEECC--CCC------EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE--EeC-------------------
Confidence 4446778877753 233 23378999999999999999999999988743 111
Q ss_pred CCcceeecccchhhhhccccCCCcceeehh
Q 012092 436 KDKLQVLNEQETLTGLQTQNLGHGFLLLAY 465 (471)
Q Consensus 436 ~~~~~~l~~~~tl~~l~~~~~~~~~l~l~y 465 (471)
-..|+.+.||+...-.. --.|.|.|
T Consensus 68 ---Gk~LkD~~TL~dY~I~d--gstLhL~~ 92 (93)
T 3plu_A 68 ---GSVLKDHISLEDYEVHD--QTNLELYY 92 (93)
T ss_dssp ---TEECCTTSBTGGGTCCT--TCEEEEEE
T ss_pred ---CEEccCcCCHHHcCCCC--CCEEEEEe
Confidence 14577778887665431 22455555
No 161
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=24.51 E-value=62 Score=24.25 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=33.1
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
+.+.+-.++++.+ .|.+.|+.||..|-+.++.+..++++++-++
T Consensus 4 m~i~vk~~~g~~~------~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~ 47 (79)
T 2uyz_B 4 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFL 47 (79)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEEECCCCCEE------EEEECCCChHHHHHHHHHHHHCCCcccEEEE
Confidence 3444555556543 4788999999999999999999888877543
No 162
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.45 E-value=12 Score=27.41 Aligned_cols=45 Identities=22% Similarity=0.574 Sum_probs=29.0
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRT 140 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~ 140 (471)
....|.||... -.-+..-.|...|+..|+..-+. .+...||.|..
T Consensus 8 ~~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34579999874 23333346777899999875443 24567888853
No 163
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=24.38 E-value=43 Score=27.86 Aligned_cols=48 Identities=13% Similarity=0.340 Sum_probs=35.2
Q ss_pred cccccccccccccc---ceeeccCCCcchHHHHHHHhhcCCCCCCcccccccc
Q 012092 95 KEVQCPICLGIIRK---TRTVMECLHRFCRECIDKAMRLGNNECPACRTHCAS 144 (471)
Q Consensus 95 ~~l~CpICl~~~~~---Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~ 144 (471)
.-|.|..|...|.. +.. ..=|..||..|..+.+. ....|..|..+|..
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~-~~~g~~yC~~~y~~~~~-~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLY-YKLGRKLCRRDYLRLFG-QDGLCASCDKRIRA 78 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEE-EETTEEECHHHHHHHHC-CCEECTTTCCEECT
T ss_pred HHcccCcCCCccccCCCeEE-EECCEEeecCchhhhCC-CccChhhcCCccCc
Confidence 56899999988852 333 45578899999988764 12389999998863
No 164
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=24.04 E-value=15 Score=27.13 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=30.3
Q ss_pred cccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccccc
Q 012092 96 EVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTHC 142 (471)
Q Consensus 96 ~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~ 142 (471)
+..|.||... ..-+..-.|...|+..|+..-+. .+...||.|....
T Consensus 5 ~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 5 EDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CSSCTTTCCC-SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCcCCCCC-CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 4579999864 23333346788899999875443 2456899886543
No 165
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.99 E-value=19 Score=32.97 Aligned_cols=46 Identities=15% Similarity=0.360 Sum_probs=30.8
Q ss_pred ccccccccccccc------eeeccCCCcchHHHHHHH------hh----cCCCCCCcccccc
Q 012092 97 VQCPICLGIIRKT------RTVMECLHRFCRECIDKA------MR----LGNNECPACRTHC 142 (471)
Q Consensus 97 l~CpICl~~~~~P------v~v~~CgH~FC~~CI~~~------l~----~~~~~CP~Cr~~~ 142 (471)
..||||...+.+. +.+-.|..-|+..|+.-. +. .....||.|+...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3699999887643 344467888989997321 11 0257999998754
No 166
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=23.29 E-value=70 Score=25.45 Aligned_cols=45 Identities=11% Similarity=0.252 Sum_probs=34.0
Q ss_pred EEEEEeeccccCCCCCCCCccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 363 MHLVLVSLDEQRIPGLQQPYLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 363 ~~~~l~~~d~~~~p~l~~pyl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
|.|.+-.++++.+ .|.+.|+.||..|-+.++.+..++++++-++.
T Consensus 22 m~I~Vk~~~g~~~------~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 22 IKLKVIGQDSSEI------HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp EEEEEECTTCCEE------EEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEEEEEeCCCCEE------EEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 4444445566644 48899999999999999999998888775443
No 167
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.21 E-value=30 Score=27.79 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=32.5
Q ss_pred cccccccccccc--c--cceeeccCCCcchHHHHHHHh-hcCCCCCCccccccc
Q 012092 95 KEVQCPICLGII--R--KTRTVMECLHRFCRECIDKAM-RLGNNECPACRTHCA 143 (471)
Q Consensus 95 ~~l~CpICl~~~--~--~Pv~v~~CgH~FC~~CI~~~l-~~~~~~CP~Cr~~~~ 143 (471)
....|.||...- . .-+..-.|.-.|...|+..-+ -.+...||.|.....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 456899998753 1 222334677789999986532 235678999976543
No 168
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=23.17 E-value=21 Score=26.98 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=31.2
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCcccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTHC 142 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~~ 142 (471)
.+..|.||... -+-+..-.|...|+..|+..-+. .+...||.|...-
T Consensus 7 ~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDG-GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCC-SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCC-CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc
Confidence 45679999864 23333346777899999875433 2456899997643
No 169
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.70 E-value=26 Score=28.63 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=27.2
Q ss_pred ccccccccccccc--eeeccCCCcchHHHHHHHhh--cCCCCCCcccc
Q 012092 97 VQCPICLGIIRKT--RTVMECLHRFCRECIDKAMR--LGNNECPACRT 140 (471)
Q Consensus 97 l~CpICl~~~~~P--v~v~~CgH~FC~~CI~~~l~--~~~~~CP~Cr~ 140 (471)
+.| ||......- +..-.|...|+..|+..-.. ...+.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 467 787655433 33345777888888854332 13479999974
No 170
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=22.40 E-value=24 Score=31.40 Aligned_cols=46 Identities=17% Similarity=0.470 Sum_probs=31.2
Q ss_pred ccccccccccccc---cceeeccCCCcchHHHHHHHhh----cCCCCCCccccc
Q 012092 95 KEVQCPICLGIIR---KTRTVMECLHRFCRECIDKAMR----LGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~---~Pv~v~~CgH~FC~~CI~~~l~----~~~~~CP~Cr~~ 141 (471)
....| ||..... .-+.+-.|..-|+..|+.-... .....||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 9987643 2445557888899999843211 246799999864
No 171
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.20 E-value=1e+02 Score=24.42 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=26.9
Q ss_pred cccCCCcchHHHHHHHHhhhcccccceeee
Q 012092 383 LCCRPTLSVRHLCQYVAHQTALQASEIEIY 412 (471)
Q Consensus 383 l~c~pt~sv~hl~~~va~~~~~~~~e~e~~ 412 (471)
|...|+.||..|-+.|+..+.++++..-|+
T Consensus 31 i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 31 VKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 678899999999999999999988887665
No 172
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=21.86 E-value=64 Score=27.91 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=28.5
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHHh----------hcCCCCCCcccc
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKAM----------RLGNNECPACRT 140 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l----------~~~~~~CP~Cr~ 140 (471)
..|.||.+-=.-. ..-.|-..||..||...+ ..+...|+.|..
T Consensus 58 ~~C~vC~dGG~Ll-cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGGNLI-CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSCTTTCCCSEEE-ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CcCeecCCCCeeE-ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3589987532211 124688899999998642 235689999964
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.60 E-value=50 Score=24.31 Aligned_cols=35 Identities=17% Similarity=0.521 Sum_probs=21.5
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.-|.|..|...|..-.....=+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 30 ECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred cCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 44677777776665333334566777777766553
No 174
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.02 E-value=62 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=13.1
Q ss_pred ccccccccccccceeeccCCCcchHHHHHHH
Q 012092 97 VQCPICLGIIRKTRTVMECLHRFCRECIDKA 127 (471)
Q Consensus 97 l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~ 127 (471)
|.|..|...|..-.....=+..||..|..+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 4455554444422222233444555554443
No 175
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=20.85 E-value=1.2e+02 Score=22.76 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=25.7
Q ss_pred ccccCCCcchHHHHHHHHhh---hcccccceeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQ---TALQASEIEIY 412 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~---~~~~~~e~e~~ 412 (471)
.|.+.|+.||..|.+.|+.+ +.++++.+-++
T Consensus 19 ~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi 52 (85)
T 2wyq_A 19 KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI 52 (85)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE
Confidence 47788999999999999997 67777777554
No 176
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=20.72 E-value=1e+02 Score=25.15 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=27.4
Q ss_pred ccccCCCcchHHHHHHHHhhhcccccceeeee
Q 012092 382 YLCCRPTLSVRHLCQYVAHQTALQASEIEIYL 413 (471)
Q Consensus 382 yl~c~pt~sv~hl~~~va~~~~~~~~e~e~~~ 413 (471)
.+.+.|+.||..|-+.|+.++.++++.+-++.
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 47888999999999999999999888776543
No 177
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.41 E-value=1.4e+02 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.4
Q ss_pred cCCC-cchHHHHHHHHhhh--cccccc-eeee
Q 012092 385 CRPT-LSVRHLCQYVAHQT--ALQASE-IEIY 412 (471)
Q Consensus 385 c~pt-~sv~hl~~~va~~~--~~~~~e-~e~~ 412 (471)
|.|+ .||..|.+.|+..+ .+++++ +-++
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi 71 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDPELIDLI 71 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEE
T ss_pred cCcccCCHHHHHHHHHHHhccCCChhhcEEEE
Confidence 7787 99999999999999 888877 5443
No 178
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.28 E-value=45 Score=27.01 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=31.1
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh---cCCCCCCccccc
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR---LGNNECPACRTH 141 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~---~~~~~CP~Cr~~ 141 (471)
....|.||..-- +-+..-.|.-.|...|+..-+. .+...||.|...
T Consensus 24 n~~~C~vC~~~g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKPG-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSSS-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCCC-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345799998642 2333346777899999876554 245789999864
No 179
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.18 E-value=32 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=24.0
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhhcCCCCCCccccccccCC
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMRLGNNECPACRTHCASRR 146 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~~~~~~CP~Cr~~~~~~~ 146 (471)
..+.|++|...|.....+.. .....|+.|...+....
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~---------------~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR---------------RKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC---------------SSSCCCHHHHHTCSCCC
T ss_pred CCeeCCcccchhCCHHHhCc---------------CCCCCCCCCChhhcCHH
Confidence 45889999988876554222 23467777777665433
No 180
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.10 E-value=78 Score=23.10 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=22.6
Q ss_pred ccccccccccccccceeeccCCCcchHHHHHHHhh
Q 012092 95 KEVQCPICLGIIRKTRTVMECLHRFCRECIDKAMR 129 (471)
Q Consensus 95 ~~l~CpICl~~~~~Pv~v~~CgH~FC~~CI~~~l~ 129 (471)
.-|.|..|...|........=+..||..|..+.+.
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 30 DCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 45778888777764333344467788888776654
Done!