BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012093
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 188/370 (50%), Positives = 247/370 (66%), Gaps = 6/370 (1%)
Query: 73 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFND 132
V G F +N + Y+NGFN YWLM A D STR KV+ F QAS + V RTWAF+
Sbjct: 7 VYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSH 66
Query: 133 GQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAG 192
G R LQ++P VY+E++F+ LDFVISEAKKY I LI+SL NNWDA+GGK QYV+W G
Sbjct: 67 GGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRG 126
Query: 193 LNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS 252
LTSDD+FF++ +K +YK +VK VL RVNT T + YK+DPTI +WEL+NEPRC SD S
Sbjct: 127 QKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLS 186
Query: 253 GDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQ 312
G T Q+W+ EMA Y+KSID+ HL+EIGLEGFYG D ++NPNSY GT+FI N+Q
Sbjct: 187 GKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYG---NDMRQYNPNSYI--FGTNFISNNQ 241
Query: 313 TLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDT 372
G+DF ++H+Y + W+ +A ++ W++ HI+D+ K L+ P+L EFG S K
Sbjct: 242 VQGIDFTTIHMYPNQWLPGLTQEAQDKWASQWIQVHIDDS-KMLKKPLLIAEFGKSTKTP 300
Query: 373 GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKSPSTSN 432
GY + RD +Y T+ N K GG G L WQ+ G +DGY +VL +SPSTS
Sbjct: 301 GYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESPSTSR 360
Query: 433 IISLHSTRIA 442
+I L S R++
Sbjct: 361 VILLQSLRLS 370
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 182/382 (47%), Gaps = 55/382 (14%)
Query: 81 VVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRA--- 137
++N + F G N Y++ +S R + + A G+ V R W F DG+
Sbjct: 21 MLNGKEFRFIGSNNYYMHY----KSNR-MIDSVLESARDMGIKVLRIWGFLDGESYCRDK 75
Query: 138 ---LQTSPSVYD--------EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186
+ P V+ + F+ LD+ I++AK+ I+LI+ L NNWD +GG QYV+
Sbjct: 76 NTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDFGGMNQYVR 135
Query: 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 246
W T D+F+ +K YK +V ++N VN +T + Y+ +PTI AWEL NE R
Sbjct: 136 W-----FGGTHHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWELANELR 190
Query: 247 CTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPN------SYA 300
C +D SG+TL W++EM+ Y+KS+D HLV +G EGF+ + F P +Y
Sbjct: 191 CETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFFS----NYEGFKPYGGEAEWAYN 246
Query: 301 TQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPV 360
G D+ + VDF + H+Y W + + Q+ W+E HI+ A K + PV
Sbjct: 247 GWSGVDWKKLLSIETVDFGTFHLYPSHW--GVSPENYAQWGAKWIEDHIKIA-KEIGKPV 303
Query: 361 LFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQL--FPDGTDYMN- 417
+ E+G+ + T I ++ L+ G G++ W L +G+D
Sbjct: 304 VLEEYGIPK-----SAPVNRTAIYRLWNDLVYDL----GGDGAMFWMLAGIGEGSDRDER 354
Query: 418 ------DGYAIVLSKSPSTSNI 433
DG+ IV SP I
Sbjct: 355 GYYPDYDGFRIVNDDSPEAELI 376
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 150/307 (48%), Gaps = 42/307 (13%)
Query: 72 MVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN 131
V G QF ++ + Y G N YW + V F SS+GL V R W FN
Sbjct: 4 FVTISGTQFNIDGKVGYFAGTNCYWCSFL----TNHADVDSTFSHISSSGLKVVRVWGFN 59
Query: 132 D-------GQ--WRALQTSPSVYD--EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 180
D GQ ++ L + S + + + LD+V+ A+++ ++LI+ NNW YGG
Sbjct: 60 DVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGG 119
Query: 181 KAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE 240
YV A G N T+ ++++T ++ Y+ +V+ V++R Y N IFAWE
Sbjct: 120 INAYV---NAFGGNATT---WYTNTAAQTQYRKYVQAVVSR--------YANSTAIFAWE 165
Query: 241 LMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYA 300
L NEPRC + S D + W ++ YVKS+D+ HLV +G EG G S D A P +Y
Sbjct: 166 LGNEPRC-NGCSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGL-GLSTGDGAY--PYTYG 221
Query: 301 TQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPV 360
GTDF +N Q +DF + H+Y DSW + + W++ H A P
Sbjct: 222 E--GTDFAKNVQIKSLDFGTFHLYPDSW------GTNYTWGNGWIQTHAA-ACLAAGKPC 272
Query: 361 LFTEFGV 367
+F E+G
Sbjct: 273 VFEEYGA 279
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 144/327 (44%), Gaps = 61/327 (18%)
Query: 72 MVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN 131
V +G+ F ++ + FY G N Y+ +G + A +AGLTV RTW FN
Sbjct: 6 FVTTEGDHFKLDGKDFYFAGSNAYYFPFNDQPDIEKGMTA-----ARAAGLTVFRTWGFN 60
Query: 132 DGQWRALQTSPSVYDEE--------VFK-------------ALDFVISEAKKYKIRLILS 170
D + T Y E VF+ D V+ A K I+LI++
Sbjct: 61 DKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTGIKLIVA 120
Query: 171 LTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 230
LTNNW YGG Y L D+F++ +K +K +VK ++ R Y
Sbjct: 121 LTNNWADYGGMDVYT-----VNLGGKYHDDFYTVPKIKEAFKRYVKAMVTR--------Y 167
Query: 231 KNDPTIFAWELMNEPRCTSDPSG-----------DTLQSWIQEMAVYVKSIDAKHLVEIG 279
++ I AWEL NE RC +D + +T+ WI+EM+ YVKS+D HLV G
Sbjct: 168 RDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLVTWG 227
Query: 280 LEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQ 339
EG + + F Y G DF R VDF ++H+Y D W S++I +
Sbjct: 228 GEGGFNRGEDEEDGF----YNGADGGDFDRELGLRNVDFGTMHLYPD-WWSKSI-----E 277
Query: 340 FTKSWMEAHIEDAEKYLRMPVLFTEFG 366
++ W+ H + PV+ E+G
Sbjct: 278 WSNQWIHDHAASG-RAANKPVVLEEYG 303
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 165/368 (44%), Gaps = 50/368 (13%)
Query: 73 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQST--RGKVSELFHQASSAGLTVCRTWAF 130
V+ G F + +P+ + G N ++ A R ++++ + G+ R A
Sbjct: 25 VRVNGGHFELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAV 84
Query: 131 NDGQWRALQTSPSV------YDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184
++ P+V YDE + + LD+++ E K + ++L N W GG QY
Sbjct: 85 SEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQY 144
Query: 185 VKWGKAAGL---NLTSDDE--------FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 233
+ W + + N+T++ E F+ + Y+ ++ ++ RVN+ Y +D
Sbjct: 145 MAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSINGKAYVDD 204
Query: 234 PTIFAWELMNEPRC-TSDPSGDTLQ---SWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAP 289
TI +W+L NEPR S + + Q W+ A Y+K++DA HLV G EG G S
Sbjct: 205 ATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSSGSEGEMG-SVN 263
Query: 290 DRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSW-------ISQTISDAHLQFTK 342
D QV FI H T +D+ + H++ +W ++T A + +
Sbjct: 264 D----------MQV---FIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETWPSA-WEKAQ 309
Query: 343 SWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGY----NTSFRDTLISSVYKTLLNSTKKGG 398
++M AHI D K L P++ EFG+ Y T +RD V++ +L S ++G
Sbjct: 310 NYMRAHI-DVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFELMLASLEQGE 368
Query: 399 SGAGSLLW 406
AG +W
Sbjct: 369 PSAGYNIW 376
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 51/196 (26%)
Query: 76 QGNQFVVNDQPFYVNGFNTYWLMVFAAD------QSTRGKVSELFHQASSAGLTVCRTWA 129
Q FV+N Q +++G N W M +A D Q + ++ F + AG R W
Sbjct: 5 QNGHFVLNGQRVFLSGGNLPW-MSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRLWI 63
Query: 130 FNDGQWRALQTSPSVYDEEVFKALDF----------VISEAKKYKIRLILSLTNNWDAYG 179
G +T+P+ D+ D ++ AKKY I + L N
Sbjct: 64 HIQG-----ETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVFPCLWN------ 112
Query: 180 GKAQYVKWGKAAGLNLTS----DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPT 235
A +N S D L+SY +K ++N V K
Sbjct: 113 -----------AAVNQDSHNRLDGLIKDQHKLQSYIDKALKPIVNHV--------KGHVA 153
Query: 236 IFAWELMNEPRCTSDP 251
+ W+LMNEP P
Sbjct: 154 LGGWDLMNEPEGMMIP 169
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 108/322 (33%), Gaps = 75/322 (23%)
Query: 51 SHASTHHGIYDLQVREDDDWQMVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKV 110
+ + T IY L+V + V +G QF++N +PFY GF + D RGK
Sbjct: 258 AKSQTECDIYPLRV----GIRSVAVKGEQFLINHKPFYFTGFGRH------EDADLRGKG 307
Query: 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALD----FVISEAKKYKIR 166
+ L W + + +TS Y EE+ D VI E
Sbjct: 308 FDNVLMVHDHALM---DWIGAN----SYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFN 360
Query: 167 LILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSY-YKAHVKTVLNRVNTF 225
L L + G AG E +S + +AH++ + +
Sbjct: 361 LSLGI----------------GFEAG---NKPKELYSEEAVNGETQQAHLQAIKELI--- 398
Query: 226 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYG 285
KN P++ W + NEP DT G ++
Sbjct: 399 --ARDKNHPSVVMWSIANEP--------DTRPQ--------------------GAREYFA 428
Query: 286 PSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 345
P A K +P T V F H D V + + + + L+ + +
Sbjct: 429 PLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDV-LCLNRYYGWYVQSGDLETAEKVL 487
Query: 346 EAHIEDAEKYLRMPVLFTEFGV 367
E + ++ L P++ TE+GV
Sbjct: 488 EKELLAWQEKLHQPIIITEYGV 509
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 107/322 (33%), Gaps = 75/322 (23%)
Query: 51 SHASTHHGIYDLQVREDDDWQMVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKV 110
+ + T IY L+V + V +G QF++N +PFY GF + D RGK
Sbjct: 258 AKSQTECDIYPLRV----GIRSVAVKGEQFLINHKPFYFTGFGRH------EDADLRGKG 307
Query: 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALD----FVISEAKKYKIR 166
+ L W + + +TS Y EE D VI E
Sbjct: 308 FDNVLXVHDHALX---DWIGAN----SYRTSHYPYAEEXLDWADEHGIVVIDETAAVGFN 360
Query: 167 LILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSY-YKAHVKTVLNRVNTF 225
L L + G AG E +S + +AH++ + +
Sbjct: 361 LSLGI----------------GFEAG---NKPKELYSEEAVNGETQQAHLQAIKELI--- 398
Query: 226 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYG 285
KN P++ W + NEP DT G ++
Sbjct: 399 --ARDKNHPSVVXWSIANEP--------DTRPQ--------------------GAREYFA 428
Query: 286 PSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 345
P A K +P T V F H D V + + + + L+ + +
Sbjct: 429 PLAEATRKLDPTRPITCVNVXFCDAHTDTISDLFDV-LCLNRYYGWYVQSGDLETAEKVL 487
Query: 346 EAHIEDAEKYLRMPVLFTEFGV 367
E + ++ L P++ TE+GV
Sbjct: 488 EKELLAWQEKLHQPIIITEYGV 509
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 107/322 (33%), Gaps = 75/322 (23%)
Query: 51 SHASTHHGIYDLQVREDDDWQMVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKV 110
+ + T IY L+V + V +G QF++N +PFY GF + D RGK
Sbjct: 258 AKSQTECDIYPLRV----GIRSVAVKGEQFLINHKPFYFTGFGRH------EDADLRGKG 307
Query: 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALD----FVISEAKKYKIR 166
+ L W + + +TS Y EE D VI E
Sbjct: 308 FDNVLXVHDHALX---DWIGAN----SYRTSHYPYAEEXLDWADEHGIVVIDETAAVGFN 360
Query: 167 LILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSY-YKAHVKTVLNRVNTF 225
L L + G AG E +S + +AH++ + +
Sbjct: 361 LSLGI----------------GFEAG---NKPKELYSEEAVNGETQQAHLQAIKELI--- 398
Query: 226 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYG 285
KN P++ W + NEP DT G ++
Sbjct: 399 --ARDKNHPSVVXWSIANEP--------DTRPQ--------------------GAREYFA 428
Query: 286 PSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 345
P A K +P T V F H D V + + + + L+ + +
Sbjct: 429 PLAEATRKLDPTRPITCVNVXFCDAHTDTISDLFDV-LCLNRYYGWYVQSGDLETAEKVL 487
Query: 346 EAHIEDAEKYLRMPVLFTEFGV 367
E + ++ L P++ TE+GV
Sbjct: 488 EKELLAWQEKLHQPIIITEYGV 509
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 111/292 (38%), Gaps = 86/292 (29%)
Query: 78 NQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQW-- 135
+QF++N +PFY +G N + D RGK L V FN +W
Sbjct: 314 SQFLINGKPFYFHGVNKH------EDADIRGK-------GFDWPLLVK---DFNLLRWLG 357
Query: 136 -RALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN 194
A +TS Y EEV + D +Y I +I D G GL
Sbjct: 358 ANAFRTSHYPYAEEVMQMCD-------RYGIVVI-------DECPG----------VGLA 393
Query: 195 LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGD 254
L +FF++ +L + + ++ V+ R KN P + W + NEP + +G
Sbjct: 394 LP---QFFNNVSLHHHMQV-MEEVVRRD--------KNHPAVVMWSVANEPASHLESAG- 440
Query: 255 TLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTL 314
+++ + + KS+D PS P N N YA G +
Sbjct: 441 ---YYLKMVIAHTKSLD--------------PSRPVTFVSNSN-YAADKGAPY------- 475
Query: 315 GVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFG 366
VD ++ Y SW HL+ + + E+ K + P++ +E+G
Sbjct: 476 -VDVICLNSYY-SWYHDY---GHLELIQLQLATQFENWYKKYQKPIIQSEYG 522
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 230 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAP 289
YK+ P +E++NEP P + ++E ++SID KH + IG + G SA
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 290 DR---AKFNPNSYAT 301
++ K+ NS T
Sbjct: 180 EKLSVPKWEKNSIVT 194
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 230 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAP 289
YK+ P +E++NEP P + ++E ++SID KH + IG + G SA
Sbjct: 122 YKDYPETLFFEILNEPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 290 DR---AKFNPNSYAT 301
++ K+ NS T
Sbjct: 180 EKLSVPKWEKNSIVT 194
>pdb|3JRK|A Chain A, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|B Chain B, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|C Chain C, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|D Chain D, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|E Chain E, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|F Chain F, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|G Chain G, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
pdb|3JRK|H Chain H, A Putative Tagatose 1,6-Diphosphate Aldolase From
Streptococcus Pyogenes
Length = 322
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 310 NHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSA 369
+ + GVD V + + + +D + FTK D E +P ++ GVSA
Sbjct: 191 SKERFGVDVLKVEVPVNXKFVEGFADGEVLFTKEEAAQAFRDQEASTDLPYIYLSAGVSA 250
Query: 370 KDTGYNTSFRDTLI 383
K F+DTL+
Sbjct: 251 K------LFQDTLV 258
>pdb|3MHF|A Chain A, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHF|B Chain B, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHF|C Chain C, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHF|D Chain D, Tagatose-1,6-Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHG|A Chain A, Dihydroxyacetone Phosphate Carbanion Intermediate In
Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHG|B Chain B, Dihydroxyacetone Phosphate Carbanion Intermediate In
Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHG|C Chain C, Dihydroxyacetone Phosphate Carbanion Intermediate In
Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
Pyogenes
pdb|3MHG|D Chain D, Dihydroxyacetone Phosphate Carbanion Intermediate In
Tagatose-1,6- Bisphosphate Aldolase From Streptococcus
Pyogenes
Length = 326
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 310 NHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSA 369
+ + GVD V + + + +D + FTK D E +P ++ GVSA
Sbjct: 195 SKERFGVDVLKVEVPVNMKFVEGFADGEVLFTKEEAAQAFRDQEASTDLPYIYLSAGVSA 254
Query: 370 KDTGYNTSFRDTLI 383
K F+DTL+
Sbjct: 255 K------LFQDTLV 262
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 230 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAP 289
YK+ P +E++N P P + ++E ++SID KH + IG + G SA
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 290 DR---AKFNPNSYAT 301
++ K+ NS T
Sbjct: 180 EKLSVPKWEKNSIVT 194
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 230 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAP 289
YK+ P +E++N P P + ++E ++SID KH + IG + G SA
Sbjct: 122 YKDYPETLFFEILNAPHGNLTP--EKWNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 290 DR---AKFNPNSYAT 301
++ K+ NS T
Sbjct: 180 EKLSVPKWEKNSIVT 194
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 287 SAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWME 346
PD F P + I H T G S+ I+ D + + +T SWM
Sbjct: 192 CCPDHKDFKPIKEVIDECEEIIAKHGTGG----SIKIFHDC--KKGCEGVDVVYTDSWMS 245
Query: 347 AHIEDAEKYLRMPVLFTEFGV 367
HI +K R+ VL T F V
Sbjct: 246 YHITKEQKEARLKVL-TPFQV 265
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 174 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 233
Query: 213 AHVKTVLNRVNTFTNLTYKNDPTIF--AWELMNE 244
H + +R+ T + + AWE+ E
Sbjct: 234 KHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRE 267
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 91 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 150
Query: 213 AHVKTVLNRVNTFTNLTYKNDPTIF--AWELMNE 244
H + +R+ T + + AWE+ E
Sbjct: 151 KHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRE 184
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 91 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 150
Query: 213 AHVKTVLNRVNTFTNLTYKNDPTIF--AWELMNE 244
H + +R+ T + + AWE+ E
Sbjct: 151 KHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRE 184
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 91 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 150
Query: 213 AHVKTVLNRVNTFTNLTYKNDPTIF--AWELMNE 244
H + +R+ T + + AWE+ E
Sbjct: 151 KHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRE 184
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 92 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFSSLQQLVAYYS 151
Query: 213 AHVKTVLNRVNTFTNLTYKNDPTIF-----AWELMNE 244
H + +R+ TN+ + P AWE+ E
Sbjct: 152 KHADGLCHRL---TNVCPTSKPQTQGLAKDAWEIPRE 185
>pdb|1SHD|A Chain A, Peptide Inhibitors Of Src Sh3-Sh2-Phosphoprotein
Interactions
pdb|1HCT|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1HCS|B Chain B, Nmr Structure Of The Human Src Sh2 Domain Complex
pdb|1A07|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A07|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Malonyl
Tyr-Glu-(N,N- Dipentyl Amine)
pdb|1A08|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A08|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Difluoro Phosphotyr-
Glu-(N,N-Dipentyl Amine)
pdb|1A09|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A09|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Formyl
Phosphotyr-Glu- (N,N-Dipentyl Amine)
pdb|1A1B|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1B|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(N,N-
Dipentyl Amine)
pdb|1A1C|A Chain A, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1C|B Chain B, C-Src (Sh2 Domain) Complexed With
Ace-Phosphotyr-Glu-(N-Me(- (Ch2)3-Cyclopentyl))
pdb|1A1E|A Chain A, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
pdb|1A1E|B Chain B, C-Src (Sh2 Domain) Complexed With Ace-Phosphotyr-Glu-(3-
Butylpiperidine)
Length = 107
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 33 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 92
Query: 213 AHVKTVLNRVNT 224
H + +R+ T
Sbjct: 93 KHADGLCHRLTT 104
>pdb|1O41|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78300.
pdb|1O42|A Chain A, Crystal Structure Of Sh2 In Complex With Ru81843.
pdb|1O43|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82129.
pdb|1O44|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85052
pdb|1O45|A Chain A, Crystal Structure Of Sh2 In Complex With Ru84687.
pdb|1O46|A Chain A, Crystal Structure Of Sh2 In Complex With Ru90395.
pdb|1O47|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82209.
pdb|1O48|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85053.
pdb|1O49|A Chain A, Crystal Structure Of Sh2 In Complex With Ru85493.
pdb|1O4A|A Chain A, Crystal Structure Of Sh2 In Complex With Ru82197.
pdb|1O4B|A Chain A, Crystal Structure Of Sh2 In Complex With Ru83876.
pdb|1O4D|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78262.
pdb|1O4E|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78299.
pdb|1O4H|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79072.
pdb|1O4I|A Chain A, Crystal Structure Of Sh2 In Complex With Pas219.
pdb|1O4J|A Chain A, Crystal Structure Of Sh2 In Complex With Iso24.
pdb|1O4K|A Chain A, Crystal Structure Of Sh2 In Complex With Pasbn.
pdb|1O4L|A Chain A, Crystal Structure Of Sh2 In Complex With Fragment2.
pdb|1O4M|A Chain A, Crystal Structure Of Sh2 In Complex With Malonicacid.
pdb|1O4N|A Chain A, Crystal Structure Of Sh2 In Complex With Oxalic Acid.
pdb|1O4O|A Chain A, Crystal Structure Of Sh2 In Complex With Phenylphosphate.
pdb|1O4P|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78791.
pdb|1O4Q|A Chain A, Crystal Structure Of Sh2 In Complex With Ru79256.
pdb|1O4R|A Chain A, Crystal Structure Of Sh2 In Complex With Ru78783
Length = 108
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK--AAGLNLTSDDEFFSHTTLKSYYK 212
F++ E++ K LS+++ +A G ++ K K + G +TS +F S L +YY
Sbjct: 31 FLVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYS 90
Query: 213 AHVKTVLNRVNT 224
H + +R+ T
Sbjct: 91 KHADGLCHRLTT 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,434,413
Number of Sequences: 62578
Number of extensions: 664309
Number of successful extensions: 1434
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 41
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)