Query 012093
Match_columns 471
No_of_seqs 345 out of 2108
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10150 beta-D-glucuronidase; 100.0 9.6E-35 2.1E-39 315.2 31.6 321 38-426 234-578 (604)
2 PRK10340 ebgA cryptic beta-D-g 100.0 2.5E-33 5.4E-38 316.9 24.6 267 36-413 273-550 (1021)
3 PRK09525 lacZ beta-D-galactosi 100.0 3.5E-33 7.6E-38 315.1 24.9 276 37-413 290-576 (1027)
4 PF00150 Cellulase: Cellulase 100.0 1.3E-28 2.8E-33 242.0 26.0 266 82-411 3-280 (281)
5 PF02836 Glyco_hydro_2_C: Glyc 99.9 2.5E-26 5.4E-31 228.7 24.4 157 73-280 1-158 (298)
6 COG3934 Endo-beta-mannanase [C 99.9 2E-27 4.4E-32 236.5 9.6 310 80-445 4-326 (587)
7 COG3250 LacZ Beta-galactosidas 99.9 2.6E-25 5.6E-30 242.7 18.2 187 35-282 239-435 (808)
8 TIGR03356 BGL beta-galactosida 99.9 7.3E-21 1.6E-25 197.6 21.5 299 107-439 53-425 (427)
9 PRK09593 arb 6-phospho-beta-gl 99.9 1.9E-20 4.2E-25 196.4 24.0 307 107-445 72-470 (478)
10 PLN02998 beta-glucosidase 99.9 2.7E-20 5.9E-25 195.6 22.9 307 107-447 81-487 (497)
11 PRK09589 celA 6-phospho-beta-g 99.9 7.3E-20 1.6E-24 192.0 25.3 307 107-445 66-469 (476)
12 TIGR01233 lacG 6-phospho-beta- 99.9 5.4E-20 1.2E-24 192.7 24.1 307 107-446 52-462 (467)
13 PLN02814 beta-glucosidase 99.9 4.5E-20 9.7E-25 194.3 22.9 307 107-447 76-482 (504)
14 PRK13511 6-phospho-beta-galact 99.9 6.6E-20 1.4E-24 192.5 23.7 306 107-445 53-463 (469)
15 PRK15014 6-phospho-beta-glucos 99.8 2.2E-19 4.8E-24 188.3 25.4 307 107-445 68-470 (477)
16 PRK09852 cryptic 6-phospho-bet 99.8 2.1E-19 4.5E-24 188.1 24.0 307 107-445 70-466 (474)
17 PLN02849 beta-glucosidase 99.8 1.7E-19 3.7E-24 189.9 23.2 305 107-445 78-480 (503)
18 COG2723 BglB Beta-glucosidase/ 99.8 1.1E-19 2.5E-24 184.8 20.2 306 107-446 58-451 (460)
19 PF02449 Glyco_hydro_42: Beta- 99.8 8.4E-20 1.8E-24 187.5 19.2 286 106-443 8-373 (374)
20 PF00232 Glyco_hydro_1: Glycos 99.8 7.2E-21 1.6E-25 199.8 10.6 305 107-445 57-450 (455)
21 PF03198 Glyco_hydro_72: Gluca 99.7 7.2E-15 1.6E-19 142.7 18.8 276 68-426 6-292 (314)
22 KOG0626 Beta-glucosidase, lact 99.6 5.8E-13 1.3E-17 137.1 24.0 306 107-445 90-506 (524)
23 PF07745 Glyco_hydro_53: Glyco 99.6 1.6E-13 3.5E-18 136.7 17.6 243 110-407 26-295 (332)
24 PF01301 Glyco_hydro_35: Glyco 99.5 1.7E-12 3.6E-17 130.1 18.4 168 79-273 1-173 (319)
25 PF13204 DUF4038: Protein of u 99.5 3.9E-12 8.5E-17 125.8 19.1 168 77-281 2-187 (289)
26 smart00633 Glyco_10 Glycosyl h 99.4 2.2E-11 4.9E-16 118.5 21.7 229 135-426 3-244 (254)
27 PLN03059 beta-galactosidase; P 99.4 2.3E-11 4.9E-16 132.5 19.2 183 73-278 30-220 (840)
28 PF12876 Cellulase-like: Sugar 99.3 3.2E-12 6.9E-17 103.7 6.0 75 230-324 5-88 (88)
29 COG2730 BglC Endoglucanase [Ca 99.3 1.2E-10 2.7E-15 120.7 16.0 115 109-247 74-193 (407)
30 KOG2230 Predicted beta-mannosi 99.2 6.7E-10 1.5E-14 113.6 17.5 199 26-280 280-493 (867)
31 COG1874 LacA Beta-galactosidas 99.2 3.6E-10 7.8E-15 121.4 14.7 174 76-272 4-191 (673)
32 COG3867 Arabinogalactan endo-1 99.1 7.3E-09 1.6E-13 98.9 20.7 251 109-408 64-342 (403)
33 PF01229 Glyco_hydro_39: Glyco 98.9 1.3E-08 2.8E-13 108.2 14.8 276 107-426 38-346 (486)
34 PF00331 Glyco_hydro_10: Glyco 98.8 1E-07 2.2E-12 96.0 15.5 246 114-418 27-293 (320)
35 KOG0496 Beta-galactosidase [Ca 98.8 1.2E-07 2.7E-12 99.9 15.2 153 73-247 20-177 (649)
36 PF14488 DUF4434: Domain of un 98.4 5.2E-06 1.1E-10 75.4 13.9 142 104-280 16-161 (166)
37 COG5309 Exo-beta-1,3-glucanase 98.4 3.4E-05 7.3E-10 73.3 18.8 205 105-390 60-269 (305)
38 COG3693 XynA Beta-1,4-xylanase 98.2 0.00022 4.8E-09 69.8 19.6 117 134-279 68-192 (345)
39 PF11790 Glyco_hydro_cc: Glyco 98.1 5.2E-05 1.1E-09 73.1 13.8 141 238-407 68-211 (239)
40 PF14587 Glyco_hydr_30_2: O-Gl 97.6 0.034 7.3E-07 56.6 23.7 297 88-421 16-367 (384)
41 COG5520 O-Glycosyl hydrolase [ 97.2 0.018 3.9E-07 57.2 16.0 235 108-410 65-311 (433)
42 PF02638 DUF187: Glycosyl hydr 97.2 0.022 4.7E-07 57.2 17.1 208 106-326 17-263 (311)
43 PF03662 Glyco_hydro_79n: Glyc 96.9 0.0035 7.6E-08 62.5 8.5 23 150-172 108-130 (319)
44 COG3934 Endo-beta-mannanase [C 96.8 1.4E-05 3.1E-10 81.4 -9.1 350 68-446 33-470 (587)
45 PF02055 Glyco_hydro_30: O-Gly 96.8 0.096 2.1E-06 55.9 18.4 255 109-417 102-390 (496)
46 PF13200 DUF4015: Putative gly 96.4 0.93 2E-05 45.4 21.5 204 106-330 11-232 (316)
47 COG3534 AbfA Alpha-L-arabinofu 95.8 0.26 5.6E-06 50.8 14.2 180 106-326 46-246 (501)
48 cd06565 GH20_GcnA-like Glycosy 95.1 1 2.2E-05 45.0 16.0 154 104-277 13-183 (301)
49 PRK10785 maltodextrin glucosid 95.0 0.38 8.3E-06 52.7 13.8 67 106-172 177-247 (598)
50 TIGR01515 branching_enzym alph 94.6 0.82 1.8E-05 50.3 15.0 182 92-277 139-346 (613)
51 PLN02705 beta-amylase 94.3 0.56 1.2E-05 50.2 12.2 130 106-269 266-402 (681)
52 cd06564 GH20_DspB_LnbB-like Gl 94.2 3 6.5E-05 42.1 17.2 148 104-271 13-193 (326)
53 TIGR02402 trehalose_TreZ malto 94.1 1.3 2.7E-05 48.1 14.9 162 90-273 92-271 (542)
54 PF14871 GHL6: Hypothetical gl 94.1 0.36 7.8E-06 42.0 8.8 105 111-221 3-122 (132)
55 smart00642 Aamy Alpha-amylase 94.0 0.18 3.9E-06 45.7 7.0 68 105-172 16-91 (166)
56 cd02742 GH20_hexosaminidase Be 93.9 3 6.4E-05 41.7 16.3 153 104-276 12-188 (303)
57 PLN02161 beta-amylase 93.9 0.72 1.6E-05 48.4 12.0 128 106-267 115-249 (531)
58 PRK12313 glycogen branching en 93.9 2.2 4.7E-05 47.3 16.5 165 106-279 168-360 (633)
59 PLN02905 beta-amylase 93.8 0.72 1.6E-05 49.5 11.8 130 106-269 284-420 (702)
60 COG3664 XynB Beta-xylosidase [ 93.8 1.2 2.7E-05 45.5 13.0 246 116-425 13-277 (428)
61 PLN02803 beta-amylase 93.5 0.79 1.7E-05 48.4 11.4 129 106-268 105-240 (548)
62 PRK05402 glycogen branching en 93.4 2.7 5.8E-05 47.3 16.4 167 106-277 263-455 (726)
63 PLN02801 beta-amylase 93.3 0.87 1.9E-05 47.9 11.4 126 106-245 35-187 (517)
64 cd06568 GH20_SpHex_like A subg 93.1 6.6 0.00014 39.7 17.2 148 104-276 14-192 (329)
65 PLN00197 beta-amylase; Provisi 92.7 1 2.3E-05 47.7 11.0 123 106-245 125-276 (573)
66 PRK14706 glycogen branching en 92.7 3.6 7.8E-05 45.5 15.8 159 109-276 169-354 (639)
67 COG1649 Uncharacterized protei 92.6 1.1 2.4E-05 46.4 11.0 165 105-280 61-272 (418)
68 PF00128 Alpha-amylase: Alpha 92.3 0.2 4.2E-06 49.3 5.0 66 107-172 3-73 (316)
69 PF01120 Alpha_L_fucos: Alpha- 92.2 4.3 9.4E-05 41.3 14.7 146 107-278 90-243 (346)
70 PLN02960 alpha-amylase 92.1 5.5 0.00012 45.2 16.2 169 106-278 414-609 (897)
71 PRK14705 glycogen branching en 91.2 5 0.00011 47.4 15.3 183 90-276 746-954 (1224)
72 cd06562 GH20_HexA_HexB-like Be 91.1 13 0.00028 38.0 16.8 110 105-221 15-147 (348)
73 PRK12568 glycogen branching en 91.1 9.9 0.00021 42.6 16.8 163 108-277 270-459 (730)
74 cd06563 GH20_chitobiase-like T 90.6 15 0.00032 37.6 16.8 110 105-221 15-163 (357)
75 PLN02361 alpha-amylase 90.5 1.3 2.9E-05 45.9 9.1 86 82-172 8-97 (401)
76 PF12891 Glyco_hydro_44: Glyco 89.9 0.73 1.6E-05 44.0 6.0 58 212-277 107-176 (239)
77 PF00728 Glyco_hydro_20: Glyco 89.9 1.6 3.5E-05 44.2 9.1 155 104-277 14-214 (351)
78 PF01373 Glyco_hydro_14: Glyco 89.2 0.66 1.4E-05 47.7 5.5 58 107-171 15-73 (402)
79 cd06570 GH20_chitobiase-like_1 88.3 11 0.00025 37.7 13.5 65 105-172 15-89 (311)
80 PRK09936 hypothetical protein; 87.7 20 0.00044 35.3 14.2 138 104-280 34-180 (296)
81 PRK10933 trehalose-6-phosphate 85.8 2.8 6E-05 45.6 8.1 64 106-172 31-102 (551)
82 TIGR02403 trehalose_treC alpha 85.1 3 6.4E-05 45.3 8.0 65 105-172 24-96 (543)
83 TIGR02456 treS_nterm trehalose 84.8 2.5 5.4E-05 45.8 7.2 68 105-172 25-97 (539)
84 PRK09505 malS alpha-amylase; R 84.7 3 6.5E-05 46.4 7.9 67 106-172 228-313 (683)
85 COG3589 Uncharacterized conser 84.6 2.8 6E-05 41.9 6.7 56 107-172 15-70 (360)
86 PLN02447 1,4-alpha-glucan-bran 84.5 3.2 6.9E-05 46.5 7.9 165 109-277 252-443 (758)
87 PRK03705 glycogen debranching 84.5 2.2 4.7E-05 47.3 6.7 59 113-172 184-263 (658)
88 PRK09441 cytoplasmic alpha-amy 84.1 2.8 6E-05 44.7 7.2 66 107-172 21-102 (479)
89 PF07488 Glyco_hydro_67M: Glyc 84.1 5.9 0.00013 39.1 8.6 90 106-221 55-147 (328)
90 COG0296 GlgB 1,4-alpha-glucan 84.1 2.8 6.1E-05 45.8 7.1 78 91-172 144-235 (628)
91 cd06547 GH85_ENGase Endo-beta- 83.9 5.1 0.00011 40.7 8.5 94 156-277 51-145 (339)
92 PF05089 NAGLU: Alpha-N-acetyl 83.3 6.4 0.00014 39.6 8.8 159 104-279 15-218 (333)
93 PRK13398 3-deoxy-7-phosphohept 82.0 17 0.00036 35.6 11.1 76 83-173 25-100 (266)
94 TIGR02401 trehalose_TreY malto 81.5 4 8.7E-05 46.1 7.3 68 105-172 13-86 (825)
95 PF07555 NAGidase: beta-N-acet 81.1 14 0.0003 37.0 10.2 91 104-221 11-103 (306)
96 PF03659 Glyco_hydro_71: Glyco 81.1 8.3 0.00018 39.9 9.0 55 104-171 13-67 (386)
97 smart00812 Alpha_L_fucos Alpha 80.8 41 0.0009 34.8 14.0 135 109-274 82-226 (384)
98 PLN00196 alpha-amylase; Provis 80.6 9.2 0.0002 40.2 9.3 82 86-172 25-113 (428)
99 PLN02784 alpha-amylase 80.3 10 0.00022 43.0 9.8 86 82-172 499-589 (894)
100 TIGR01531 glyc_debranch glycog 79.6 6.8 0.00015 46.5 8.5 98 71-172 97-206 (1464)
101 PRK14511 maltooligosyl trehalo 79.2 4.7 0.0001 45.9 6.9 67 106-172 18-90 (879)
102 TIGR02104 pulA_typeI pullulana 79.2 3.4 7.5E-05 45.4 5.8 144 111-276 167-345 (605)
103 cd06603 GH31_GANC_GANAB_alpha 79.2 62 0.0013 32.8 14.6 131 105-247 21-165 (339)
104 PF00703 Glyco_hydro_2: Glycos 78.8 0.99 2.1E-05 36.9 1.2 24 39-62 69-93 (110)
105 PRK13397 3-deoxy-7-phosphohept 78.6 9.3 0.0002 37.0 7.9 75 84-173 14-88 (250)
106 TIGR03234 OH-pyruv-isom hydrox 78.3 5.3 0.00012 38.4 6.3 63 108-174 84-146 (254)
107 cd02875 GH18_chitobiase Chitob 77.9 16 0.00035 37.4 9.9 90 155-279 68-157 (358)
108 PRK09856 fructoselysine 3-epim 77.9 4.9 0.00011 39.1 6.0 62 107-172 89-150 (275)
109 PF05913 DUF871: Bacterial pro 77.5 5.3 0.00012 40.8 6.2 57 106-172 12-68 (357)
110 PRK13210 putative L-xylulose 5 77.0 5.8 0.00012 38.7 6.2 62 107-172 93-154 (284)
111 cd06602 GH31_MGAM_SI_GAA This 76.6 43 0.00093 34.0 12.5 159 106-279 22-200 (339)
112 TIGR02100 glgX_debranch glycog 76.3 6.8 0.00015 43.8 7.1 59 113-172 189-266 (688)
113 TIGR00542 hxl6Piso_put hexulos 76.1 7.2 0.00016 38.1 6.6 62 107-172 93-154 (279)
114 TIGR01370 cysRS possible cyste 75.8 37 0.0008 34.1 11.5 71 202-277 140-210 (315)
115 PRK14507 putative bifunctional 75.1 6.8 0.00015 47.7 7.0 67 106-172 756-828 (1693)
116 PRK08673 3-deoxy-7-phosphohept 74.6 15 0.00032 37.3 8.4 76 83-173 91-166 (335)
117 cd06569 GH20_Sm-chitobiase-lik 74.6 13 0.00028 39.3 8.3 66 104-172 18-118 (445)
118 PF00332 Glyco_hydro_17: Glyco 74.4 45 0.00097 33.5 11.8 113 110-279 15-129 (310)
119 PRK12595 bifunctional 3-deoxy- 73.8 23 0.0005 36.3 9.7 76 83-173 116-191 (360)
120 COG2876 AroA 3-deoxy-D-arabino 73.0 34 0.00074 33.3 9.9 79 80-173 40-118 (286)
121 PF01261 AP_endonuc_2: Xylose 72.9 7.6 0.00017 35.5 5.6 65 107-173 70-134 (213)
122 PF01261 AP_endonuc_2: Xylose 72.8 46 0.001 30.2 10.9 129 108-274 27-158 (213)
123 KOG2233 Alpha-N-acetylglucosam 72.7 38 0.00081 35.8 10.7 156 106-278 76-280 (666)
124 COG0366 AmyA Glycosidases [Car 71.9 12 0.00026 39.6 7.5 67 106-172 27-98 (505)
125 PRK13209 L-xylulose 5-phosphat 71.8 8.6 0.00019 37.6 6.0 62 107-172 98-159 (283)
126 KOG3698 Hyaluronoglucosaminida 71.4 35 0.00076 36.7 10.2 82 82-172 11-95 (891)
127 COG1523 PulA Type II secretory 71.0 10 0.00022 42.2 6.7 107 114-221 206-350 (697)
128 PRK09997 hydroxypyruvate isome 70.8 11 0.00024 36.3 6.5 63 108-174 85-147 (258)
129 PF04914 DltD_C: DltD C-termin 70.4 34 0.00075 29.6 8.6 86 147-260 32-117 (130)
130 PRK14042 pyruvate carboxylase 69.6 17 0.00037 39.8 8.0 64 87-171 80-143 (596)
131 cd06545 GH18_3CO4_chitinase Th 69.4 64 0.0014 31.0 11.4 94 151-280 46-139 (253)
132 cd00019 AP2Ec AP endonuclease 68.5 15 0.00032 35.8 6.8 61 107-172 84-144 (279)
133 cd06542 GH18_EndoS-like Endo-b 68.5 86 0.0019 30.0 12.1 101 150-280 50-152 (255)
134 PRK14510 putative bifunctional 68.2 11 0.00023 45.1 6.5 60 112-172 191-268 (1221)
135 TIGR00542 hxl6Piso_put hexulos 66.0 88 0.0019 30.4 11.8 126 107-274 51-176 (279)
136 cd06591 GH31_xylosidase_XylS X 65.3 1.5E+02 0.0033 29.6 13.8 159 106-279 22-211 (319)
137 TIGR02102 pullulan_Gpos pullul 65.3 21 0.00046 41.9 8.1 150 106-276 478-668 (1111)
138 smart00636 Glyco_18 Glycosyl h 62.7 60 0.0013 32.5 10.1 99 152-280 53-155 (334)
139 KOG4701 Chitinase [Cell wall/m 62.5 1.9E+02 0.0041 29.7 15.2 90 312-409 204-294 (568)
140 PRK13209 L-xylulose 5-phosphat 62.4 1.1E+02 0.0024 29.7 11.7 124 107-272 56-179 (283)
141 cd02874 GH18_CFLE_spore_hydrol 62.4 49 0.0011 32.9 9.3 95 155-279 49-143 (313)
142 cd06600 GH31_MGAM-like This fa 62.1 1.4E+02 0.003 30.0 12.5 160 105-279 21-196 (317)
143 PRK14582 pgaB outer membrane N 61.5 2.1E+02 0.0046 32.0 14.6 125 107-237 333-471 (671)
144 PRK09856 fructoselysine 3-epim 61.5 1.2E+02 0.0027 29.1 11.9 132 108-278 47-180 (275)
145 KOG2499 Beta-N-acetylhexosamin 58.4 46 0.001 35.1 8.2 66 106-172 196-271 (542)
146 PRK12331 oxaloacetate decarbox 58.0 41 0.00089 35.6 8.1 62 89-171 82-143 (448)
147 COG5016 Pyruvate/oxaloacetate 57.9 28 0.00062 35.9 6.5 63 88-171 83-145 (472)
148 PRK12581 oxaloacetate decarbox 57.5 42 0.00091 35.7 8.0 64 87-171 89-152 (468)
149 TIGR01361 DAHP_synth_Bsub phos 56.6 52 0.0011 32.1 8.1 76 83-173 23-98 (260)
150 PRK12330 oxaloacetate decarbox 56.0 46 0.00099 35.7 8.1 64 87-171 81-144 (499)
151 PRK13396 3-deoxy-7-phosphohept 54.8 1.4E+02 0.003 30.5 11.0 76 83-173 98-174 (352)
152 KOG0470 1,4-alpha-glucan branc 54.6 25 0.00054 38.9 5.8 64 107-171 254-331 (757)
153 TIGR02455 TreS_stutzeri trehal 52.9 36 0.00079 37.5 6.7 61 112-172 78-151 (688)
154 PRK14040 oxaloacetate decarbox 52.8 52 0.0011 36.2 8.0 61 87-168 81-141 (593)
155 cd06589 GH31 The enzymes of gl 51.0 2.4E+02 0.0052 27.3 12.8 65 105-172 21-87 (265)
156 cd07937 DRE_TIM_PC_TC_5S Pyruv 51.0 58 0.0013 31.9 7.5 49 107-171 90-138 (275)
157 COG3623 SgaU Putative L-xylulo 50.2 1.3E+02 0.0028 28.9 9.1 71 146-247 91-161 (287)
158 cd06595 GH31_xylosidase_XylS-l 50.1 1.2E+02 0.0025 30.1 9.5 131 105-248 22-163 (292)
159 cd02872 GH18_chitolectin_chito 50.1 1.6E+02 0.0035 29.8 10.9 104 151-280 56-160 (362)
160 PRK12858 tagatose 1,6-diphosph 49.9 33 0.00072 34.9 5.7 56 110-171 108-163 (340)
161 PRK12677 xylose isomerase; Pro 49.7 37 0.0008 35.1 6.1 65 108-172 114-180 (384)
162 cd06548 GH18_chitinase The GH1 48.3 1.2E+02 0.0026 30.3 9.5 104 151-280 70-182 (322)
163 PF10566 Glyco_hydro_97: Glyco 48.2 54 0.0012 32.3 6.6 46 110-167 108-153 (273)
164 PLN02877 alpha-amylase/limit d 47.5 49 0.0011 38.3 7.1 23 150-172 465-487 (970)
165 KOG1066 Glucosidase II catalyt 47.5 60 0.0013 36.0 7.2 38 202-249 477-515 (915)
166 PRK09989 hypothetical protein; 47.5 42 0.00092 32.2 5.9 61 108-172 85-145 (258)
167 KOG2331 Predicted glycosylhydr 47.2 72 0.0016 33.2 7.4 89 158-277 118-208 (526)
168 KOG2566 Beta-glucocerebrosidas 46.3 3.6E+02 0.0078 28.0 17.0 173 206-421 226-419 (518)
169 cd06592 GH31_glucosidase_KIAA1 46.0 1.6E+02 0.0035 29.2 9.9 111 104-221 26-153 (303)
170 PRK14565 triosephosphate isome 44.8 2.3E+02 0.005 27.2 10.2 118 115-280 79-196 (237)
171 PRK12399 tagatose 1,6-diphosph 44.6 43 0.00093 33.6 5.3 54 114-173 111-164 (324)
172 COG4615 PvdE ABC-type sideroph 44.5 1E+02 0.0023 32.1 8.1 109 75-221 375-497 (546)
173 COG2342 Predicted extracellula 44.5 3.1E+02 0.0067 27.1 10.9 69 204-278 121-190 (300)
174 PF07071 DUF1341: Protein of u 43.5 60 0.0013 30.3 5.7 45 109-167 136-180 (218)
175 COG1453 Predicted oxidoreducta 43.3 3.9E+02 0.0085 27.5 11.9 46 307-365 159-204 (391)
176 PRK01060 endonuclease IV; Prov 43.0 1.6E+02 0.0036 28.4 9.4 51 109-167 13-63 (281)
177 TIGR01108 oadA oxaloacetate de 42.9 92 0.002 34.2 8.1 50 106-171 89-138 (582)
178 PRK09282 pyruvate carboxylase 42.8 87 0.0019 34.4 7.9 63 88-171 81-143 (592)
179 PRK09997 hydroxypyruvate isome 42.6 1.4E+02 0.0029 28.7 8.6 92 147-274 81-172 (258)
180 PF03644 Glyco_hydro_85: Glyco 42.5 74 0.0016 31.9 6.8 93 156-277 47-140 (311)
181 smart00816 Amb_V_allergen Amb 41.7 12 0.00025 25.2 0.6 13 445-457 20-32 (45)
182 PRK13210 putative L-xylulose 5 41.7 3.3E+02 0.0071 26.2 12.7 105 106-242 50-154 (284)
183 PRK04161 tagatose 1,6-diphosph 40.2 55 0.0012 32.9 5.3 56 112-173 111-166 (329)
184 TIGR01232 lacD tagatose 1,6-di 39.2 59 0.0013 32.6 5.4 55 113-173 111-165 (325)
185 TIGR03252 uncharacterized HhH- 38.8 16 0.00035 33.4 1.3 24 8-31 13-36 (177)
186 TIGR02103 pullul_strch alpha-1 38.5 2.1E+02 0.0045 33.2 10.3 111 150-283 403-527 (898)
187 TIGR03581 EF_0839 conserved hy 36.7 74 0.0016 30.1 5.2 45 109-167 136-180 (236)
188 cd07948 DRE_TIM_HCS Saccharomy 36.7 60 0.0013 31.6 5.0 59 112-172 75-133 (262)
189 cd06601 GH31_lyase_GLase GLase 36.6 1.7E+02 0.0037 29.6 8.4 117 105-248 21-137 (332)
190 cd02871 GH18_chitinase_D-like 35.9 4.5E+02 0.0097 26.1 11.8 48 152-221 61-108 (312)
191 cd07944 DRE_TIM_HOA_like 4-hyd 35.9 76 0.0016 31.0 5.6 46 111-172 85-130 (266)
192 smart00481 POLIIIAc DNA polyme 35.9 99 0.0021 22.8 5.1 47 108-171 15-61 (67)
193 TIGR01235 pyruv_carbox pyruvat 35.8 1.1E+02 0.0025 36.3 7.9 64 87-171 609-672 (1143)
194 cd01299 Met_dep_hydrolase_A Me 35.3 1.7E+02 0.0038 29.0 8.4 61 106-171 118-180 (342)
195 PF03913 Amb_V_allergen: Amb V 35.2 17 0.00036 24.4 0.6 13 445-457 19-31 (44)
196 PRK01229 N-glycosylase/DNA lya 35.1 19 0.00042 33.8 1.2 24 9-32 33-56 (208)
197 COG1501 Alpha-glucosidases, fa 34.8 3.8E+02 0.0083 30.6 11.5 158 106-283 278-466 (772)
198 PTZ00333 triosephosphate isome 34.5 3.4E+02 0.0073 26.4 9.8 48 115-172 83-130 (255)
199 PF02065 Melibiase: Melibiase; 34.4 5.5E+02 0.012 26.7 16.5 172 88-280 41-234 (394)
200 COG3684 LacD Tagatose-1,6-bisp 34.1 72 0.0016 31.0 4.8 53 114-173 117-169 (306)
201 PRK12457 2-dehydro-3-deoxyphos 33.6 3.8E+02 0.0083 26.4 9.8 75 86-173 17-96 (281)
202 PF06415 iPGM_N: BPG-independe 32.9 1.6E+02 0.0035 28.0 7.0 76 83-172 26-102 (223)
203 cd07939 DRE_TIM_NifV Streptomy 32.9 67 0.0015 31.1 4.7 59 111-171 72-130 (259)
204 PRK05692 hydroxymethylglutaryl 32.7 76 0.0017 31.4 5.1 60 111-172 82-141 (287)
205 TIGR03849 arch_ComA phosphosul 32.3 1.4E+02 0.0031 28.7 6.6 52 107-172 70-121 (237)
206 PRK14567 triosephosphate isome 32.2 4.3E+02 0.0092 25.7 10.0 47 116-172 80-126 (253)
207 PF02679 ComA: (2R)-phospho-3- 32.1 1.1E+02 0.0024 29.6 5.8 52 107-172 83-134 (244)
208 PLN03033 2-dehydro-3-deoxyphos 32.0 1.9E+02 0.0042 28.6 7.5 77 84-173 15-96 (290)
209 PF13380 CoA_binding_2: CoA bi 32.0 1.2E+02 0.0025 25.5 5.4 44 106-169 64-107 (116)
210 PF04748 Polysacc_deac_2: Dive 31.9 1E+02 0.0022 29.1 5.6 99 106-221 72-170 (213)
211 cd06604 GH31_glucosidase_II_Ma 31.7 3.3E+02 0.0072 27.4 9.7 127 106-247 22-162 (339)
212 KOG0471 Alpha-amylase [Carbohy 31.2 91 0.002 33.9 5.8 65 108-172 40-109 (545)
213 PRK12822 phospho-2-dehydro-3-d 31.0 2.8E+02 0.0062 28.3 8.7 82 83-173 51-146 (356)
214 PRK09261 phospho-2-dehydro-3-d 30.6 2.9E+02 0.0063 28.2 8.8 82 83-173 51-146 (349)
215 COG0276 HemH Protoheme ferro-l 30.4 4.8E+02 0.01 26.3 10.2 106 155-270 106-219 (320)
216 COG3623 SgaU Putative L-xylulo 30.2 1.3E+02 0.0029 28.8 5.8 63 107-173 95-157 (287)
217 COG1306 Uncharacterized conser 30.0 1.2E+02 0.0025 30.3 5.6 64 106-171 75-144 (400)
218 PRK14041 oxaloacetate decarbox 29.7 1.8E+02 0.004 30.9 7.6 49 107-171 94-142 (467)
219 TIGR03234 OH-pyruv-isom hydrox 29.0 3.7E+02 0.0079 25.5 9.1 126 111-274 42-171 (254)
220 PRK08195 4-hyroxy-2-oxovalerat 28.6 1.4E+02 0.0031 30.2 6.4 46 111-172 91-136 (337)
221 PLN02763 hydrolase, hydrolyzin 28.2 1E+03 0.023 28.0 14.9 163 106-283 199-401 (978)
222 PF01055 Glyco_hydro_31: Glyco 28.1 6.7E+02 0.014 26.1 11.6 160 106-280 41-235 (441)
223 TIGR02171 Fb_sc_TIGR02171 Fibr 27.9 5.1E+02 0.011 30.0 10.8 74 147-248 804-877 (912)
224 TIGR03217 4OH_2_O_val_ald 4-hy 27.9 1.5E+02 0.0033 30.0 6.4 46 111-172 90-135 (333)
225 TIGR02660 nifV_homocitr homoci 27.9 87 0.0019 32.1 4.7 60 111-172 75-134 (365)
226 TIGR02090 LEU1_arch isopropylm 27.9 89 0.0019 32.0 4.8 60 111-172 74-133 (363)
227 TIGR02631 xylA_Arthro xylose i 27.8 1.4E+02 0.0031 30.8 6.3 66 108-173 115-182 (382)
228 PRK00042 tpiA triosephosphate 27.6 4.9E+02 0.011 25.1 9.6 48 115-172 80-127 (250)
229 cd07945 DRE_TIM_CMS Leptospira 27.6 1.1E+02 0.0025 30.0 5.3 60 111-172 77-136 (280)
230 COG3661 AguA Alpha-glucuronida 27.5 5.5E+02 0.012 27.1 10.1 61 106-171 181-241 (684)
231 smart00518 AP2Ec AP endonuclea 27.2 5.3E+02 0.011 24.6 10.0 53 109-169 11-63 (273)
232 PRK12755 phospho-2-dehydro-3-d 27.2 3.6E+02 0.0078 27.6 8.7 82 83-173 52-147 (353)
233 PF09370 TIM-br_sig_trns: TIM- 27.1 1.8E+02 0.0038 28.5 6.3 58 108-172 95-158 (268)
234 PF10035 DUF2179: Uncharacteri 26.4 71 0.0015 22.8 2.7 19 261-279 30-48 (55)
235 cd03174 DRE_TIM_metallolyase D 25.8 2E+02 0.0044 27.4 6.7 60 111-172 77-136 (265)
236 cd07941 DRE_TIM_LeuA3 Desulfob 25.4 1.2E+02 0.0027 29.6 5.1 58 112-171 82-139 (273)
237 cd07943 DRE_TIM_HOA 4-hydroxy- 25.4 2.1E+02 0.0046 27.6 6.8 46 111-172 88-133 (263)
238 PLN02746 hydroxymethylglutaryl 25.3 1.1E+02 0.0025 31.1 4.9 60 110-171 123-182 (347)
239 COG0469 PykF Pyruvate kinase [ 25.2 1.6E+02 0.0034 31.4 6.1 48 111-170 20-67 (477)
240 PF00121 TIM: Triosephosphate 25.2 1.6E+02 0.0036 28.3 5.8 48 115-172 78-125 (244)
241 PF01791 DeoC: DeoC/LacD famil 25.2 78 0.0017 30.1 3.6 54 111-171 79-132 (236)
242 PRK13913 3-methyladenine DNA g 25.1 32 0.0007 32.6 0.9 22 11-32 28-49 (218)
243 PRK11858 aksA trans-homoaconit 25.0 1.1E+02 0.0025 31.4 5.0 59 111-171 78-136 (378)
244 cd02879 GH18_plant_chitinase_c 24.9 6.1E+02 0.013 25.0 10.0 56 201-269 86-141 (299)
245 COG1099 Predicted metal-depend 24.6 94 0.002 29.6 3.8 55 109-171 12-70 (254)
246 cd02878 GH18_zymocin_alpha Zym 24.6 6E+02 0.013 25.6 10.1 65 204-279 88-157 (345)
247 COG0269 SgbH 3-hexulose-6-phos 24.1 2.7E+02 0.0058 26.4 6.7 45 114-175 73-117 (217)
248 PLN03244 alpha-amylase; Provis 23.9 72 0.0016 36.1 3.3 128 150-279 440-584 (872)
249 PF14701 hDGE_amylase: glucano 23.3 2.3E+02 0.005 29.7 6.8 66 107-172 21-98 (423)
250 COG3622 Hfi Hydroxypyruvate is 23.2 2.5E+02 0.0055 27.1 6.4 64 107-174 84-147 (260)
251 PF00682 HMGL-like: HMGL-like 23.1 1.4E+02 0.003 28.2 4.9 64 107-172 66-129 (237)
252 PRK10426 alpha-glucosidase; Pr 22.7 1.1E+03 0.023 26.3 13.1 160 107-283 220-413 (635)
253 cd00598 GH18_chitinase-like Th 22.7 5.7E+02 0.012 23.1 11.4 92 156-279 54-147 (210)
254 PF02057 Glyco_hydro_59: Glyco 22.1 4.2E+02 0.0092 29.5 8.7 178 155-410 116-295 (669)
255 COG3142 CutC Uncharacterized p 22.0 2.1E+02 0.0046 27.3 5.6 59 88-164 59-117 (241)
256 cd00311 TIM Triosephosphate is 22.0 7.1E+02 0.015 23.9 11.2 48 115-172 78-125 (242)
257 cd06549 GH18_trifunctional GH1 21.7 5.4E+02 0.012 25.3 8.9 63 201-279 82-144 (298)
258 COG0635 HemN Coproporphyrinoge 21.5 5.5E+02 0.012 26.8 9.3 89 110-249 136-234 (416)
259 cd00958 DhnA Class I fructose- 21.3 2E+02 0.0043 27.2 5.5 55 108-172 76-130 (235)
260 TIGR03586 PseI pseudaminic aci 20.8 3.9E+02 0.0084 27.0 7.6 68 106-173 15-99 (327)
261 PRK08227 autoinducer 2 aldolas 20.5 2E+02 0.0043 28.2 5.3 52 108-169 94-145 (264)
262 COG1082 IolE Sugar phosphate i 20.5 4.8E+02 0.01 24.7 8.2 64 107-172 83-147 (274)
263 TIGR00034 aroFGH phospho-2-deh 20.5 5.7E+02 0.012 26.1 8.7 82 83-173 46-141 (344)
264 PLN00061 photosystem II protei 20.3 2.2E+02 0.0049 25.1 5.0 53 206-277 83-135 (150)
265 COG3525 Chb N-acetyl-beta-hexo 20.3 3.9E+02 0.0085 29.7 7.8 65 105-172 275-367 (732)
266 PRK09058 coproporphyrinogen II 20.2 1.8E+02 0.0039 30.7 5.5 49 111-172 163-221 (449)
No 1
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=9.6e-35 Score=315.24 Aligned_cols=321 Identities=15% Similarity=0.180 Sum_probs=219.1
Q ss_pred ceeeccccccceeEEeeccceee-eecc------cCCCCCCc--EEEeCCeEEECCEEEEEEEeeccch-hhhccCCCch
Q 012093 38 GFESTVEEIENHLSHASTHHGIY-DLQV------REDDDWQM--VQKQGNQFVVNDQPFYVNGFNTYWL-MVFAADQSTR 107 (471)
Q Consensus 38 ~~~~~~~~~~~w~~~~~~~~~~~-~~~~------~~~~~~gf--v~v~g~~f~~nGkp~~~~G~N~~~~-~~~~~~~~~~ 107 (471)
..++.+++|+.|+++.|+||++. ++.. ....+.|| |++++++|++||+|++++|+|.|+. +..|. +.+.
T Consensus 234 ~~~~~i~~p~lW~p~~P~LY~l~v~l~~~g~~~d~~~~~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~-a~~~ 312 (604)
T PRK10150 234 SGTLQVVNPHLWQPGEGYLYTLCVELAKSGTECDTYPLRFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGK-GLDE 312 (604)
T ss_pred ceEEEcCCCcccCCCCCceEEEEEEEeeCCeeEEEEEeeeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCC-cCCH
Confidence 35677899999999999999988 5532 12358899 5667899999999999999999875 33343 5678
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCc--CCChhhhh
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA--YGGKAQYV 185 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~--~gG~~~y~ 185 (471)
+.+++||++||++|+|+||++|++. ++ +++++|+++||+|+.++.. |.. ..+.. +.
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh~p~-------------~~-------~~~~~cD~~GllV~~E~p~-~~~~~~~~~~-~~ 370 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSHYPY-------------SE-------EMLDLADRHGIVVIDETPA-VGLNLSFGAG-LE 370 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEeccCCC-------------CH-------HHHHHHHhcCcEEEEeccc-cccccccccc-cc
Confidence 8999999999999999999976531 12 4569999999999999742 210 00000 00
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHH
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAV 265 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~ 265 (471)
+. .. ....-.....+|++++++++.+++||+| ++|||+|++|+++||+.... .....++++|.+
T Consensus 371 -~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~mv~r--------~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~ 434 (604)
T PRK10150 371 -AG--NK-PKETYSEEAVNGETQQAHLQAIRELIAR--------DKNHPSVVMWSIANEPASRE----QGAREYFAPLAE 434 (604)
T ss_pred -cc--cc-ccccccccccchhHHHHHHHHHHHHHHh--------ccCCceEEEEeeccCCCccc----hhHHHHHHHHHH
Confidence 00 00 0000011124578999999999999999 99999999999999987532 345678899999
Q ss_pred HhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHHH
Q 012093 266 YVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 345 (471)
Q Consensus 266 ~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i 345 (471)
.+|++||+|||+.+...+.. +. .....+.+|++++|.|+.+.....+... ...++
T Consensus 435 ~~k~~DptR~vt~~~~~~~~----------~~-----------~~~~~~~~Dv~~~N~Y~~wy~~~~~~~~----~~~~~ 489 (604)
T PRK10150 435 LTRKLDPTRPVTCVNVMFAT----------PD-----------TDTVSDLVDVLCLNRYYGWYVDSGDLET----AEKVL 489 (604)
T ss_pred HHHhhCCCCceEEEecccCC----------cc-----------cccccCcccEEEEcccceecCCCCCHHH----HHHHH
Confidence 99999999999987532100 00 0012356899999999873322222111 11222
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCC-------CCCCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCC----CCCC
Q 012093 346 EAHIEDAEKYLRMPVLFTEFGVSAK-------DTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFP----DGTD 414 (471)
Q Consensus 346 ~~~~~~a~~~~~kPviv~EfG~~~~-------~~g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~----~g~~ 414 (471)
...+....+..+||++++|||+.+. ...++++.|..+++..+..+.+. +.++|.++|++.| .+..
T Consensus 490 ~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~~----p~~~G~~iW~~~D~~~~~g~~ 565 (604)
T PRK10150 490 EKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDRV----PAVVGEQVWNFADFATSQGIL 565 (604)
T ss_pred HHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEEEeeeccCCCCCCc
Confidence 2222221121489999999995442 22357888999988877765543 6699999999998 3322
Q ss_pred C-CCCCceEEeCC
Q 012093 415 Y-MNDGYAIVLSK 426 (471)
Q Consensus 415 ~-~~dgf~i~~~~ 426 (471)
. -++..||+..+
T Consensus 566 ~~~g~~~Gl~~~d 578 (604)
T PRK10150 566 RVGGNKKGIFTRD 578 (604)
T ss_pred ccCCCcceeEcCC
Confidence 1 23467877655
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=2.5e-33 Score=316.90 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=196.8
Q ss_pred CcceeeccccccceeEEeeccceee-eecc-------cCCCCCCc--EEEeCCeEEECCEEEEEEEeeccch-hhhccCC
Q 012093 36 DWGFESTVEEIENHLSHASTHHGIY-DLQV-------REDDDWQM--VQKQGNQFVVNDQPFYVNGFNTYWL-MVFAADQ 104 (471)
Q Consensus 36 ~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~-------~~~~~~gf--v~v~g~~f~~nGkp~~~~G~N~~~~-~~~~~~~ 104 (471)
...+.+.+++|+.|++|.|+||++. ++.. ....+.|| |++++++|++||+|++++|+|+|.. +..|. +
T Consensus 273 ~~~~~~~i~~p~lWs~e~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~-a 351 (1021)
T PRK10340 273 SASFAFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGR-A 351 (1021)
T ss_pred eEEEEEEcCCCCcCCCCCCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCc-c
Confidence 3566788999999999999999988 6542 12358899 5667899999999999999999875 55453 5
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
.+.+.+++||++||++|+|+||++|+++. + +++++|+++||+|+.++. . ..+|+..
T Consensus 352 ~~~e~~~~dl~lmK~~g~NavR~sHyP~~-------------~-------~fydlcDe~GllV~dE~~-~--e~~g~~~- 407 (1021)
T PRK10340 352 VGMDRVEKDIQLMKQHNINSVRTAHYPND-------------P-------RFYELCDIYGLFVMAETD-V--ESHGFAN- 407 (1021)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecCCCCC-------------H-------HHHHHHHHCCCEEEECCc-c--cccCccc-
Confidence 67899999999999999999999876421 1 456999999999999862 1 1122110
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHH
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 264 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~ 264 (471)
.+ ....+..+|.+.+++.+.+++||+| ++|||+|++|+++||... +..+ ++|+
T Consensus 408 ------~~----~~~~~~~~p~~~~~~~~~~~~mV~R--------drNHPSIi~WslGNE~~~-----g~~~----~~~~ 460 (1021)
T PRK10340 408 ------VG----DISRITDDPQWEKVYVDRIVRHIHA--------QKNHPSIIIWSLGNESGY-----GCNI----RAMY 460 (1021)
T ss_pred ------cc----ccccccCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEECccCccc-----cHHH----HHHH
Confidence 00 0012346789999999999999999 999999999999999865 2333 7899
Q ss_pred HHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHH
Q 012093 265 VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSW 344 (471)
Q Consensus 265 ~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~ 344 (471)
+++|++||+|||+.... . ....+|+++. +|+.. . .
T Consensus 461 ~~~k~~DptR~v~~~~~-----------------~------------~~~~~Dv~~~-~Y~~~-----------~----~ 495 (1021)
T PRK10340 461 HAAKALDDTRLVHYEED-----------------R------------DAEVVDVIST-MYTRV-----------E----L 495 (1021)
T ss_pred HHHHHhCCCceEEeCCC-----------------c------------Cccccceecc-ccCCH-----------H----H
Confidence 99999999999985321 0 1234788874 56532 1 1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCC
Q 012093 345 MEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 413 (471)
Q Consensus 345 i~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~ 413 (471)
+..+ +....+||++++||++++. ++.+...+| ++.+.+. +.++|.|+|.|.|++.
T Consensus 496 ~~~~---~~~~~~kP~i~~Ey~hamg---n~~g~~~~y----w~~~~~~----p~l~GgfiW~~~D~~~ 550 (1021)
T PRK10340 496 MNEF---GEYPHPKPRILCEYAHAMG---NGPGGLTEY----QNVFYKH----DCIQGHYVWEWCDHGI 550 (1021)
T ss_pred HHHH---HhCCCCCcEEEEchHhccC---CCCCCHHHH----HHHHHhC----CceeEEeeeecCcccc
Confidence 2222 1221479999999999884 344445566 5555554 6799999999999865
No 3
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=3.5e-33 Score=315.08 Aligned_cols=276 Identities=14% Similarity=0.143 Sum_probs=197.3
Q ss_pred cceeeccccccceeEEeeccceee-eecc-c------CCCCCCc--EEEeCCeEEECCEEEEEEEeeccch-hhhccCCC
Q 012093 37 WGFESTVEEIENHLSHASTHHGIY-DLQV-R------EDDDWQM--VQKQGNQFVVNDQPFYVNGFNTYWL-MVFAADQS 105 (471)
Q Consensus 37 ~~~~~~~~~~~~w~~~~~~~~~~~-~~~~-~------~~~~~gf--v~v~g~~f~~nGkp~~~~G~N~~~~-~~~~~~~~ 105 (471)
..+++.+++|+.|++|.|+||++. ++.. . ...+.|| |++++++|++||+|++++|+|+|.. +..|. ..
T Consensus 290 ~~~~~~v~~p~lWs~e~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~-a~ 368 (1027)
T PRK09525 290 VTLRLNVENPKLWSAETPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQ-VM 368 (1027)
T ss_pred EEEEEEcCCCCcCCCCCCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCc-cC
Confidence 456788999999999999999988 5532 1 1357899 6677999999999999999999975 55553 56
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+++.+++||++||++|+|+||++|+++. ++++++|+++||+|+.++. . ..+|+..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~sHyP~~--------------------p~fydlcDe~GilV~dE~~--~-e~hg~~~-- 423 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCSHYPNH--------------------PLWYELCDRYGLYVVDEAN--I-ETHGMVP-- 423 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecCCCCC--------------------HHHHHHHHHcCCEEEEecC--c-cccCCcc--
Confidence 8999999999999999999999876421 1456999999999999963 1 1122210
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHH
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAV 265 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~ 265 (471)
......+|++.+++.+.+++||+| +||||+|++|+++||+... ..+ ++|++
T Consensus 424 ------------~~~~~~dp~~~~~~~~~~~~mV~R--------drNHPSIi~WSlgNE~~~g-----~~~----~~l~~ 474 (1027)
T PRK09525 424 ------------MNRLSDDPRWLPAMSERVTRMVQR--------DRNHPSIIIWSLGNESGHG-----ANH----DALYR 474 (1027)
T ss_pred ------------ccCCCCCHHHHHHHHHHHHHHHHh--------CCCCCEEEEEeCccCCCcC-----hhH----HHHHH
Confidence 012356799999999999999999 9999999999999998752 233 78899
Q ss_pred HhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHHH
Q 012093 266 YVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWM 345 (471)
Q Consensus 266 ~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i 345 (471)
++|++||+|||+....+ + .....|++ ..+|+..... ..+.... ...+
T Consensus 475 ~~k~~DptRpV~y~~~~----------------~------------~~~~~Dv~-~~my~~~~~~-~~~~~~~---~~~~ 521 (1027)
T PRK09525 475 WIKSNDPSRPVQYEGGG----------------A------------DTAATDII-CPMYARVDED-QPFPAVP---KWSI 521 (1027)
T ss_pred HHHhhCCCCcEEECCCC----------------C------------CCCccccc-cCCCCCcccc-ccccccc---hHHH
Confidence 99999999999864210 0 01235666 4566542110 0000000 0012
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCC
Q 012093 346 EAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 413 (471)
Q Consensus 346 ~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~ 413 (471)
...... ...+||+|+||||+++. ++.+...+| ++.+.+. +..+|.|+|.|.|++.
T Consensus 522 ~~~~~~--~~~~kP~i~cEY~Hamg---n~~g~l~~y----w~~~~~~----~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 522 KKWISL--PGETRPLILCEYAHAMG---NSLGGFAKY----WQAFRQY----PRLQGGFIWDWVDQGL 576 (1027)
T ss_pred HHHHhc--CCCCCCEEEEechhccc---CcCccHHHH----HHHHhcC----CCeeEEeeEeccCcce
Confidence 222111 01369999999999884 444555565 6656554 6699999999999876
No 4
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=1.3e-28 Score=242.04 Aligned_cols=266 Identities=27% Similarity=0.428 Sum_probs=184.0
Q ss_pred ECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccC-CCCC-CCChHHHHHHHHHHHH
Q 012093 82 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ-TSPS-VYDEEVFKALDFVISE 159 (471)
Q Consensus 82 ~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~-~~~g-~~~~~~l~~lD~~l~~ 159 (471)
.+|+++.++|+|.+|... ...+++|+.|+++|+|+||+++. |..++ +.++ .+++..+++||++|++
T Consensus 3 ~~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~ 70 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDA 70 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHH
T ss_pred CCCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHH
Confidence 489999999999986532 26789999999999999999875 44444 4554 5899999999999999
Q ss_pred HHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 012093 160 AKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 239 (471)
Q Consensus 160 a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~w 239 (471)
|.++||+|||++|.. ..|... .......+...+.+.++++.+++| |+++|.|++|
T Consensus 71 a~~~gi~vild~h~~----------~~w~~~-------~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~ 125 (281)
T PF00150_consen 71 AQAYGIYVILDLHNA----------PGWANG-------GDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGW 125 (281)
T ss_dssp HHHTT-EEEEEEEES----------TTCSSS-------TSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEE
T ss_pred HHhCCCeEEEEeccC----------cccccc-------ccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEE
Confidence 999999999999863 012100 111233455778889999999999 9999999999
Q ss_pred EeecCCCCCCCC------ChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh-cC
Q 012093 240 ELMNEPRCTSDP------SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 312 (471)
Q Consensus 240 el~NEp~~~~~~------~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~-~~ 312 (471)
+|+|||...... ....+.+|++++++.||+.||+++|+++..++... . .. ..... ..
T Consensus 126 el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~------------~---~~-~~~~~P~~ 189 (281)
T PF00150_consen 126 ELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGAD------------P---DG-AAADNPND 189 (281)
T ss_dssp ESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTB------------H---HH-HHHHSTTT
T ss_pred EecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccc------------c---ch-hhhcCccc
Confidence 999999986432 12568899999999999999999999987443111 0 00 00000 11
Q ss_pred CCCceEEEEeccCCCccCC-CC--hhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHH
Q 012093 313 TLGVDFASVHIYADSWISQ-TI--SDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKT 389 (471)
Q Consensus 313 ~~~iD~~s~H~Y~~~w~~~-~~--~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~ 389 (471)
....+++++|+|.+.-... .. ...........++.+...+.+ .++|++|+|||....... ...++...+++.
T Consensus 190 ~~~~~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~ 264 (281)
T PF00150_consen 190 ADNNDVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDY 264 (281)
T ss_dssp TTTSEEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHH
T ss_pred ccCceeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHH
Confidence 2466799999998532111 00 111223344556666655555 799999999999753211 223443343443
Q ss_pred HHHhhhcCCCccceeecccCCC
Q 012093 390 LLNSTKKGGSGAGSLLWQLFPD 411 (471)
Q Consensus 390 i~~~~~~~~~~~G~~~W~~~~~ 411 (471)
+.+ . ..|+++|+|..+
T Consensus 265 ~~~----~--~~g~~~W~~~~~ 280 (281)
T PF00150_consen 265 LEQ----N--GIGWIYWSWKPN 280 (281)
T ss_dssp HHH----T--TCEEEECEESSS
T ss_pred HHH----C--CCeEEEEecCCC
Confidence 333 2 689999999875
No 5
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.95 E-value=2.5e-26 Score=228.74 Aligned_cols=157 Identities=17% Similarity=0.286 Sum_probs=114.8
Q ss_pred EEEeCCeEEECCEEEEEEEeeccch-hhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHH
Q 012093 73 VQKQGNQFVVNDQPFYVNGFNTYWL-MVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK 151 (471)
Q Consensus 73 v~v~g~~f~~nGkp~~~~G~N~~~~-~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 151 (471)
|+|++++|+|||||++++|+|.|.. +..|. ..+.+.+++||.+||++|+|+||+++++.. +
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~-a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~-------------~---- 62 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGR-AMPDEAMERDLELMKEMGFNAIRTHHYPPS-------------P---- 62 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT----HHHHHHHHHHHHHTT-SEEEETTS--S-------------H----
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccc-cCCHHHHHHHHHHHHhcCcceEEcccccCc-------------H----
Confidence 6899999999999999999999864 44453 467899999999999999999999765311 1
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccC
Q 012093 152 ALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYK 231 (471)
Q Consensus 152 ~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk 231 (471)
+++++|+++||.|+.++... .++. |.. .| .......+|.+.+.+++.++.||+| ++
T Consensus 63 ---~~~~~cD~~GilV~~e~~~~--~~~~------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~ 118 (298)
T PF02836_consen 63 ---RFYDLCDELGILVWQEIPLE--GHGS------WQD-FG----NCNYDADDPEFRENAEQELREMVRR--------DR 118 (298)
T ss_dssp ---HHHHHHHHHT-EEEEE-S-B--SCTS------SSS-TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HT
T ss_pred ---HHHHHHhhcCCEEEEecccc--ccCc------ccc-CC----ccccCCCCHHHHHHHHHHHHHHHHc--------Cc
Confidence 45699999999999997431 1110 100 00 0012346899999999999999999 99
Q ss_pred CCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEecc
Q 012093 232 NDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 232 ~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
|||||++|+++||+ ....+++++.+.+|++||+|||+.++
T Consensus 119 NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 119 NHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp T-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 99999999999999 24557789999999999999998765
No 6
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-27 Score=236.46 Aligned_cols=310 Identities=21% Similarity=0.332 Sum_probs=216.7
Q ss_pred EEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHH-HHHHHHHHH
Q 012093 80 FVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFVIS 158 (471)
Q Consensus 80 f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~-l~~lD~~l~ 158 (471)
|.++++.+.+.+.+..|... ..+.+++|++.++.+|++.+|+|+. |++- .....|..+... +.+++.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~------~~~ei~~dle~a~~vg~k~lR~fiL-DgEd--c~d~~G~~na~s~~~y~~~fla 74 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAI------GNREIKADLEPAGFVGVKDLRLFIL-DGED--CRDKEGYRNAGSNVWYAAWFLA 74 (587)
T ss_pred EEeccccchhhhhhhHHHHh------hhhhhhcccccccCccceeEEEEEe-cCcc--hhhhhceecccccHHHHHHHhh
Confidence 44555555555544444332 2467899999999999999999954 4321 222335445444 899999999
Q ss_pred HHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEE
Q 012093 159 EAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFA 238 (471)
Q Consensus 159 ~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~ 238 (471)
.|.+++|+|++++.++|.+.||++.+..|+.. +++++++.|+..+.-+++|++.+|+- ||.||+|++
T Consensus 75 ~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~-----~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~g 141 (587)
T COG3934 75 PAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE-----QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAG 141 (587)
T ss_pred hcccCcceEEEEEeecccccCcceeEeecCCC-----CCccccccchhhcccHHHHHHHHhhh--------hccChHHHH
Confidence 99999999999999999999999988888642 24577889999999999999999998 999999999
Q ss_pred EEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceE
Q 012093 239 WELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDF 318 (471)
Q Consensus 239 wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~ 318 (471)
|.+.|||.+....++.++..|..+|+.+||.+||+|+|++|.+++. +-.+.| |+ .-..+|+
T Consensus 142 w~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp------~~~~~p--yN-----------~r~~vDy 202 (587)
T COG3934 142 WALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASP------WPQYAP--YN-----------ARFYVDY 202 (587)
T ss_pred HHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCc------ccccCC--cc-----------cceeecc
Confidence 9999998887666788999999999999999999999999986541 001112 21 2236899
Q ss_pred EEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcC-CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcC
Q 012093 319 ASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLR-MPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKG 397 (471)
Q Consensus 319 ~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~-kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~~~~ 397 (471)
.+.|.|| .|.... ...+-..|...++...+. .+ +|++++|||.+...+......+..|++. .+..
T Consensus 203 a~~hLY~-hyd~sl----~~r~s~~yg~~~l~i~~~-~g~~pV~leefGfsta~g~e~s~ayfiw~~l----al~~---- 268 (587)
T COG3934 203 AANHLYR-HYDTSL----VSRVSTVYGKPYLDIPTI-MGWQPVNLEEFGFSTAFGQENSPAYFIWIRL----ALDT---- 268 (587)
T ss_pred ccchhhh-hccCCh----hheeeeeecchhhccchh-cccceeeccccCCcccccccccchhhhhhhh----HHhh----
Confidence 9999998 453221 011112245555555555 57 9999999999987532111112222221 2222
Q ss_pred CCccceeecccCCCCC---------CCCCCCceEEeCCCccHH--HHHHHHHHHHHhcc
Q 012093 398 GSGAGSLLWQLFPDGT---------DYMNDGYAIVLSKSPSTS--NIISLHSTRIATFN 445 (471)
Q Consensus 398 ~~~~G~~~W~~~~~g~---------~~~~dgf~i~~~~~~~~~--~~i~~~~~~~~~~~ 445 (471)
+ +-|+++|++.+... .+...+|+|+..|.+.-. ..+...+...+-|.
T Consensus 269 g-gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kdI~ 326 (587)
T COG3934 269 G-GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKDIS 326 (587)
T ss_pred c-CCceEEEEecCCccCCCCCCCccccccceeeeecCCCchhhhHHHHHHhccccceee
Confidence 3 57999999998752 133458999987765322 33444444444444
No 7
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=242.71 Aligned_cols=187 Identities=16% Similarity=0.187 Sum_probs=153.9
Q ss_pred CCcceeeccccccceeEEeeccceee-eeccc------CCCCCCc--EEEeCCeEEECCEEEEEEEeeccch-hhhccCC
Q 012093 35 GDWGFESTVEEIENHLSHASTHHGIY-DLQVR------EDDDWQM--VQKQGNQFVVNDQPFYVNGFNTYWL-MVFAADQ 104 (471)
Q Consensus 35 ~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~------~~~~~gf--v~v~g~~f~~nGkp~~~~G~N~~~~-~~~~~~~ 104 (471)
......+.|.+|+.|+++.|.||+++ +|... ...+.|| |+++.+.|.+||||+++||+|+|+. +..|. .
T Consensus 239 ~~~~~~~~V~~p~lWsp~~P~LY~l~~~L~~~~~~~d~~~~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~-~ 317 (808)
T COG3250 239 GAAAGELKVENPKLWSPEDPYLYRLVVTLKDANTLIDAEALRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGR-V 317 (808)
T ss_pred cceeEEEeccCcccCCCCCCceEEEEEEEEeCCceeeEEEeeeccEEEEEECCeEEECCeEEEEeeeecccCCCcccc-c
Confidence 45778999999999999999999999 66543 1257899 6777889999999999999999986 55553 4
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
.+.+.+++||++||++|+|+||+||+++.+ +++++|+++||+||.++..- ..|
T Consensus 318 ~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~--------------------~~ydLcDelGllV~~Ea~~~---~~~---- 370 (808)
T COG3250 318 TDEDAMERDLKLMKEANMNSVRTSHYPNSE--------------------EFYDLCDELGLLVIDEAMIE---THG---- 370 (808)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCCCCH--------------------HHHHHHHHhCcEEEEecchh---hcC----
Confidence 556779999999999999999999875321 45699999999999997421 111
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHH
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 264 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~ 264 (471)
...++++++...+.+++||+| .||||+|++|+++||++... +. ..+.
T Consensus 371 ----------------~~~~~~~~k~~~~~i~~mver--------~knHPSIiiWs~gNE~~~g~-----~~----~~~~ 417 (808)
T COG3250 371 ----------------MPDDPEWRKEVSEEVRRMVER--------DRNHPSIIIWSLGNESGHGS-----NH----WALY 417 (808)
T ss_pred ----------------CCCCcchhHHHHHHHHHHHHh--------ccCCCcEEEEeccccccCcc-----cc----HHHH
Confidence 125789999999999999999 99999999999999998743 22 5678
Q ss_pred HHhhccCCCCEEEecccc
Q 012093 265 VYVKSIDAKHLVEIGLEG 282 (471)
Q Consensus 265 ~~Ir~~Dp~~lV~~g~~g 282 (471)
.++|+.||+++|+.+...
T Consensus 418 ~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 418 RWFKASDPTRPVQYEGRG 435 (808)
T ss_pred HHHhhcCCccceeccCcc
Confidence 999999999999987654
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=99.87 E-value=7.3e-21 Score=197.58 Aligned_cols=299 Identities=16% Similarity=0.235 Sum_probs=200.7
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.++++||++||++|+|++|+.+ .|++++|. +|.+|++.++.+|.+|+.|.++||.+|++|+. |+. |.
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~si----~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-fd~----P~-- 121 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRFSI----AWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-WDL----PQ-- 121 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEccc----chhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-CCc----cH--
Confidence 47899999999999999999965 59999888 68899999999999999999999999999974 432 32
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh----
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG---- 253 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g---- 253 (471)
|....|+ |.+++..+.|.++++.+++| |++ .|-.|.+.|||..... +.+
T Consensus 122 -~l~~~gG--------w~~~~~~~~f~~ya~~~~~~--------~~d--~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 122 -ALEDRGG--------WLNRDTAEWFAEYAAVVAER--------LGD--RVKHWITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred -HHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hCC--cCCEEEEecCcceecccchhhccCCCCCccH
Confidence 4333333 77899999999999999999 999 4667999999985421 110
Q ss_pred h-H------HHHHHHHHHHHhhccCCCCEEEeccc--cccCCCC-CCCc-------------cCCCC---ccccc----c
Q 012093 254 D-T------LQSWIQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDRA-------------KFNPN---SYATQ----V 303 (471)
Q Consensus 254 ~-~------~~~w~~~~~~~Ir~~Dp~~lV~~g~~--g~~~~~~-~~~~-------------~~np~---~~~~~----~ 303 (471)
. . +..-..++++.+|+..|+..|.+... .+++.+. +... ..+|- .|... .
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l 262 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYL 262 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHh
Confidence 1 1 11112356788888888766655422 2222211 1000 00000 01000 0
Q ss_pred c-------chhhhhcCCCCceEEEEeccCCCccCCC------------C-hhHHH--HHHHHHHHHHHHHHHHhcCC-cE
Q 012093 304 G-------TDFIRNHQTLGVDFASVHIYADSWISQT------------I-SDAHL--QFTKSWMEAHIEDAEKYLRM-PV 360 (471)
Q Consensus 304 g-------~d~~~~~~~~~iD~~s~H~Y~~~w~~~~------------~-~~~~~--~~~~~~i~~~~~~a~~~~~k-Pv 360 (471)
+ .|... ....+||+++++|........ . ..... ...+.-|+..+....+++++ ||
T Consensus 263 ~~~p~~~~~d~~~--l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi 340 (427)
T TIGR03356 263 GDAPFVQDGDLET--IAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPI 340 (427)
T ss_pred ccCCCCCHHHHHH--hcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCE
Confidence 0 00000 124679999999975421100 0 00001 11233455555555455786 79
Q ss_pred EEEecCCCCCC---CC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCC----CceEEeCCCccHHH
Q 012093 361 LFTEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----GYAIVLSKSPSTSN 432 (471)
Q Consensus 361 iv~EfG~~~~~---~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~d----gf~i~~~~~~~~~~ 432 (471)
+|+|.|++... .| ..++.|.+|++.++..+.+++++|.++.|++.|++.|+ .+|.+ +||+++.|-.+..|
T Consensus 341 ~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~~rfGl~~VD~~~~~R 418 (427)
T TIGR03356 341 YITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYSKRFGLVHVDYETQKR 418 (427)
T ss_pred EEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccccccceEEECCCCCcc
Confidence 99999997532 11 23678999999999999999999999999999999998 67754 68888887666667
Q ss_pred HHHHHHH
Q 012093 433 IISLHST 439 (471)
Q Consensus 433 ~i~~~~~ 439 (471)
+.|+++.
T Consensus 419 ~~K~S~~ 425 (427)
T TIGR03356 419 TPKDSAK 425 (427)
T ss_pred cccceee
Confidence 7766543
No 9
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.87 E-value=1.9e-20 Score=196.42 Aligned_cols=307 Identities=16% Similarity=0.237 Sum_probs=208.7
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-.+.++|+++||++|+|+.|+++ +|++++|. +|.+|++.++.++++|+.|.++||..|++|+ ||+. |+
T Consensus 72 Yhry~eDi~Lm~~lG~~aYRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H~dl----P~- 141 (478)
T PRK09593 72 YHHYKEDIALFAEMGFKTYRMSI----AWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-HFDC----PM- 141 (478)
T ss_pred HHhhHHHHHHHHHcCCCEEEEec----chhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-ccCC----CH-
Confidence 57899999999999999999975 59999886 4568999999999999999999999999997 5653 33
Q ss_pred hhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC----------CCh
Q 012093 185 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PSG 253 (471)
Q Consensus 185 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~----------~~g 253 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|...|||..... +.+
T Consensus 142 --~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~~~~~~g~~~~~g 201 (478)
T PRK09593 142 --HLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKG--LVKYWLTFNEINMILHAPFMGAGLYFEEG 201 (478)
T ss_pred --HHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEeecchhhhhcccccccCcccCCC
Confidence 54432 43 78999999999999999999 999 5778999999985321 111
Q ss_pred h-----HHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCCC-CCCc------------cCCCC---ccccc--
Q 012093 254 D-----TLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPSA-PDRA------------KFNPN---SYATQ-- 302 (471)
Q Consensus 254 ~-----~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~g--~~~~~~-~~~~------------~~np~---~~~~~-- 302 (471)
. .++.- ...+++.+|+..|+-.|.+.... +++.+. ++.. ...|. .|...
T Consensus 202 ~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~~ 281 (478)
T PRK09593 202 ENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYAK 281 (478)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHHH
Confidence 0 11111 13456778888887666554322 222211 1000 00110 01000
Q ss_pred -----ccc--hhh----hhcCCCCceEEEEeccCCCccCC-----C----C-------h---hHHH--HHHHHHHHHHHH
Q 012093 303 -----VGT--DFI----RNHQTLGVDFASVHIYADSWISQ-----T----I-------S---DAHL--QFTKSWMEAHIE 350 (471)
Q Consensus 303 -----~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~-----~----~-------~---~~~~--~~~~~~i~~~~~ 350 (471)
.+. .+. .......+||+++++|....... . . . .... ...+..|+..+.
T Consensus 282 ~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~ 361 (478)
T PRK09593 282 KRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITLN 361 (478)
T ss_pred HHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHHH
Confidence 000 000 00112457999999996433210 0 0 0 0001 113344566565
Q ss_pred HHHHhcCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhhh-cCCCccceeecccCCCCCCCCCCC-----
Q 012093 351 DAEKYLRMPVLFTEFGVSAKD----TG-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMNDG----- 419 (471)
Q Consensus 351 ~a~~~~~kPviv~EfG~~~~~----~g-~s~~~r~~y~~~~~~~i~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg----- 419 (471)
...+++++||+|+|.|++... .| ..+..|.+|++.++..+.++++ +|.++.|++.|++.|+ .+|..|
T Consensus 362 ~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~G~y~~R 439 (478)
T PRK09593 362 TIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGTGEMKKR 439 (478)
T ss_pred HHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccCCCccCe
Confidence 555458899999999998532 11 3467899999999999999995 8889999999999998 778666
Q ss_pred ceEEeCCCc-----cHHHHHHHHHHHHHhcc
Q 012093 420 YAIVLSKSP-----STSNIISLHSTRIATFN 445 (471)
Q Consensus 420 f~i~~~~~~-----~~~~~i~~~~~~~~~~~ 445 (471)
||+++.|-. +..|++|+++..++.+-
T Consensus 440 fGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii 470 (478)
T PRK09593 440 YGFIYVDRDNEGKGTLKRSKKKSFDWYKKVI 470 (478)
T ss_pred eceEEECCCCCCCcccceecccHHHHHHHHH
Confidence 888887743 56899999999988775
No 10
>PLN02998 beta-glucosidase
Probab=99.86 E-value=2.7e-20 Score=195.60 Aligned_cols=307 Identities=16% Similarity=0.180 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.+.++|+++||++|+|+.|+++ +|++++|. .|.+|++.++.++++|+.+.++||..|++|+ ||+. |.
T Consensus 81 Yhry~EDi~lmk~lG~~~YRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H~dl----P~-- 149 (497)
T PLN02998 81 YHKYKEDVKLMADMGLEAYRFSI----SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-HFDL----PQ-- 149 (497)
T ss_pred HHhhHHHHHHHHHcCCCeEEeec----cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-CCCC----CH--
Confidence 57899999999999999999975 59999885 4679999999999999999999999999997 5653 33
Q ss_pred hhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CChh--
Q 012093 186 KWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSGD-- 254 (471)
Q Consensus 186 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g~-- 254 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|-..|||..... +.+.
T Consensus 150 -~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 210 (497)
T PLN02998 150 -ALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGD--RVSHWTTINEVNVFALGGYDQGITPPARCS 210 (497)
T ss_pred -HHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEccCcchhhhcchhhcccCCCccc
Confidence 54432 43 78899999999999999999 999 6778999999985532 1110
Q ss_pred ---------------HHHHH------HHHHHHHhhcc---CCCCEEEeccc--cccCCCC-CCCc-------------cC
Q 012093 255 ---------------TLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDRA-------------KF 294 (471)
Q Consensus 255 ---------------~~~~w------~~~~~~~Ir~~---Dp~~lV~~g~~--g~~~~~~-~~~~-------------~~ 294 (471)
.++.- ..++.+.+|+. ++...|.+... ..++.+. +... ..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~ 290 (497)
T PLN02998 211 PPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWIL 290 (497)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhh
Confidence 11111 12345667765 56555554322 1222211 1000 00
Q ss_pred CCC---ccccc------------ccchhhhhcCCCCceEEEEeccCCCccCC---C--C--h---------------h--
Q 012093 295 NPN---SYATQ------------VGTDFIRNHQTLGVDFASVHIYADSWISQ---T--I--S---------------D-- 335 (471)
Q Consensus 295 np~---~~~~~------------~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~---~--~--~---------------~-- 335 (471)
.|. .|... ...|... ....+||+++++|....... . + . .
T Consensus 291 dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~--i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (497)
T PLN02998 291 HPLVFGDYPETMKTNVGSRLPAFTEEESEQ--VKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSI 368 (497)
T ss_pred hHHhCCCcCHHHHHHHhcCCCCCCHHHHHH--hcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCC
Confidence 010 01000 0000000 12457999999995432210 0 0 0 0
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCC
Q 012093 336 -AHLQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDG 412 (471)
Q Consensus 336 -~~~~~~~~~i~~~~~~a~~~~~k-Pviv~EfG~~~~~~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g 412 (471)
......+.-|+..+....+++++ ||+|+|.|+.....| ..+..|.+|+++++..+.+++++|.++.|++.|++.|+
T Consensus 369 ~~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dn- 447 (497)
T PLN02998 369 ENEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDV- 447 (497)
T ss_pred CCCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh-
Confidence 00011233455555555445777 699999998764322 34678999999999999999999999999999999998
Q ss_pred CCCCCC----CceEEeCCCc--cHHHHHHHHHHHHHhcccC
Q 012093 413 TDYMND----GYAIVLSKSP--STSNIISLHSTRIATFNSL 447 (471)
Q Consensus 413 ~~~~~d----gf~i~~~~~~--~~~~~i~~~~~~~~~~~~~ 447 (471)
.+|.+ +||+++.|-. +..|++|+++..++.+-..
T Consensus 448 -fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 448 -FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred -hchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 67754 6888887743 4589999999999887644
No 11
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.86 E-value=7.3e-20 Score=191.98 Aligned_cols=307 Identities=15% Similarity=0.175 Sum_probs=207.4
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-.+.++|+++||++|+|+.|+++ +|+++.|. .|.+|++.++.++++|+.|.++||..|++|+ ||+. |.
T Consensus 66 Yhry~eDi~Lm~~lG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H~dl----P~- 135 (476)
T PRK09589 66 YHRYKEDIALFAEMGFKCFRTSI----AWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-HFEM----PY- 135 (476)
T ss_pred HHhhHHHHHHHHHcCCCEEEecc----chhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-CCCC----CH-
Confidence 57899999999999999999975 59999886 3458999999999999999999999999997 5653 33
Q ss_pred hhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCC-----------C--
Q 012093 185 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTS-----------D-- 250 (471)
Q Consensus 185 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~-----------~-- 250 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|-..|||.... .
T Consensus 136 --~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~~~~~~g~ 195 (476)
T PRK09589 136 --HLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKD--KVKYWMTFNEINNQANFSEDFAPFTNSGI 195 (476)
T ss_pred --HHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcC--CCCEEEEecchhhhhccccccCCcccccc
Confidence 44332 43 78999999999999999999 999 677899999997431 0
Q ss_pred --CChh-----HHHHH------HHHHHHHhhccCCCCEEEeccc--cccCCCC-CCC------------ccCCCC---cc
Q 012093 251 --PSGD-----TLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDR------------AKFNPN---SY 299 (471)
Q Consensus 251 --~~g~-----~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~--g~~~~~~-~~~------------~~~np~---~~ 299 (471)
+.+. .++.- ..++.+.+|+..|+..|.+... .+++.+. ++. ....|. .|
T Consensus 196 ~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~Y 275 (476)
T PRK09589 196 LYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGYY 275 (476)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCCC
Confidence 1110 11111 1245677888888765554321 2232211 100 000110 01
Q ss_pred ccc-------ccc--hhh----hhcCCCCceEEEEeccCCCccCC---CC---h------------h-HHH--HHHHHHH
Q 012093 300 ATQ-------VGT--DFI----RNHQTLGVDFASVHIYADSWISQ---TI---S------------D-AHL--QFTKSWM 345 (471)
Q Consensus 300 ~~~-------~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~---~~---~------------~-~~~--~~~~~~i 345 (471)
... .+. .+. .......+||+++++|....... .+ . + ... ...+.-|
T Consensus 276 P~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl 355 (476)
T PRK09589 276 PQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAGL 355 (476)
T ss_pred cHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHHH
Confidence 000 000 000 01113457999999996533210 00 0 0 001 1234445
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHHhh-hcCCCccceeecccCCCCCCCCCC-
Q 012093 346 EAHIEDAEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNST-KKGGSGAGSLLWQLFPDGTDYMND- 418 (471)
Q Consensus 346 ~~~~~~a~~~~~kPviv~EfG~~~~~~----g-~s~~~r~~y~~~~~~~i~~~~-~~~~~~~G~~~W~~~~~g~~~~~d- 418 (471)
+..+....+++++|++|+|.|++.... | ..+..|.+|+++++..+.+++ ++|.++.|++.|++.|+ .+|.+
T Consensus 356 ~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn--~Ew~~G 433 (476)
T PRK09589 356 RYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL--VSAGTG 433 (476)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--ccccCC
Confidence 666655555589999999999985421 2 346789999999999999998 78999999999999998 77755
Q ss_pred ----CceEEeCCCc-----cHHHHHHHHHHHHHhcc
Q 012093 419 ----GYAIVLSKSP-----STSNIISLHSTRIATFN 445 (471)
Q Consensus 419 ----gf~i~~~~~~-----~~~~~i~~~~~~~~~~~ 445 (471)
+||+++.|-. +..|++|+++..++.+-
T Consensus 434 ~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i 469 (476)
T PRK09589 434 EMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVI 469 (476)
T ss_pred ccccceeeEEEcCCCCCCcccccccccHHHHHHHHH
Confidence 4888887643 46899999999988775
No 12
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.86 E-value=5.4e-20 Score=192.70 Aligned_cols=307 Identities=14% Similarity=0.182 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.+.++|+++||++|+|+.|+++ +|+++.|. +|.+|++.++.++++|+.|.++||..|++|+ ||+. |.
T Consensus 52 yhry~eDi~L~~~lG~~~yRfSI----sWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H~dl----P~-- 120 (467)
T TIGR01233 52 YHKYPVDLELAEEYGVNGIRISI----AWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-HFDT----PE-- 120 (467)
T ss_pred hhhHHHHHHHHHHcCCCEEEEec----chhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-CCCC----cH--
Confidence 57899999999999999999975 59999885 4789999999999999999999999999997 4643 33
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh----
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG---- 253 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g---- 253 (471)
|....|+ |.+++..+.|.+|.+.+++| |++ |-.|...|||..... +.+
T Consensus 121 -~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~ 180 (467)
T TIGR01233 121 -ALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD 180 (467)
T ss_pred -HHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccch
Confidence 5554454 88999999999999999999 983 778999999986431 111
Q ss_pred --hHHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCC--CCCCc-------------cCCCC---ccccc--c
Q 012093 254 --DTLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPS--APDRA-------------KFNPN---SYATQ--V 303 (471)
Q Consensus 254 --~~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~g--~~~~~--~~~~~-------------~~np~---~~~~~--~ 303 (471)
..++.. ..++++.+|+.+|+..|.+.... .++.+ .+... ..+|. .|... .
T Consensus 181 ~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~ 260 (467)
T TIGR01233 181 LAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTME 260 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHH
Confidence 111111 23557788888887766654322 22221 11000 00110 01000 0
Q ss_pred --------c--------chhhhhcC-CCCceEEEEeccCCCccCC-----------C--------------------C-h
Q 012093 304 --------G--------TDFIRNHQ-TLGVDFASVHIYADSWISQ-----------T--------------------I-S 334 (471)
Q Consensus 304 --------g--------~d~~~~~~-~~~iD~~s~H~Y~~~w~~~-----------~--------------------~-~ 334 (471)
+ .|...... ...+||+++++|....... . . .
T Consensus 261 ~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (467)
T TIGR01233 261 GVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYVP 340 (467)
T ss_pred HHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCCC
Confidence 0 00000000 2356999999995422110 0 0 0
Q ss_pred hHHH--HHHHHHHHHHHHHHHHhcCC--cEEEEecCCCCCC---CC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeec
Q 012093 335 DAHL--QFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLW 406 (471)
Q Consensus 335 ~~~~--~~~~~~i~~~~~~a~~~~~k--Pviv~EfG~~~~~---~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W 406 (471)
.... ...+.-|+..+....+++++ |++|+|.|++... .| ..+..|.+|+++++..+.+++++|.++.|+++|
T Consensus 341 ~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~W 420 (467)
T TIGR01233 341 RTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIW 420 (467)
T ss_pred cCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeec
Confidence 0000 11244456655555555776 6999999998532 12 346789999999999999999999999999999
Q ss_pred ccCCCCCCCCCC----CceEEeCCCccHHHHHHHHHHHHHhccc
Q 012093 407 QLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFNS 446 (471)
Q Consensus 407 ~~~~~g~~~~~d----gf~i~~~~~~~~~~~i~~~~~~~~~~~~ 446 (471)
++.|+ .+|.. +||+++.|-+++.|++|+++..++.+-.
T Consensus 421 Sl~Dn--~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy~~ii~ 462 (467)
T TIGR01233 421 SLMDV--FSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLAE 462 (467)
T ss_pred cchhh--hchhccccCccceEEECCCCCccccccHHHHHHHHHH
Confidence 99998 67754 6889998877788999999999887653
No 13
>PLN02814 beta-glucosidase
Probab=99.86 E-value=4.5e-20 Score=194.27 Aligned_cols=307 Identities=15% Similarity=0.191 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.+.++|+++||++|+|+.|+++ +|+++.|. .|.+|++.++.++++|+.|.++||..|++|+ ||+. |.
T Consensus 76 Yhry~EDI~L~k~lG~~ayRfSI----sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H~dl----P~-- 144 (504)
T PLN02814 76 YHKYKEDVKLMAEMGLESFRFSI----SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-HYDL----PQ-- 144 (504)
T ss_pred HHhhHHHHHHHHHcCCCEEEEec----cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-CCCC----CH--
Confidence 57899999999999999999975 59999885 5789999999999999999999999999997 5653 32
Q ss_pred hhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-------Ch----
Q 012093 186 KWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SG---- 253 (471)
Q Consensus 186 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~-------~g---- 253 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|-..|||...... .+
T Consensus 145 -~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~pg~~~~ 205 (504)
T PLN02814 145 -SLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGE--DVKLWTTINEATIFAIGSYGQGIRYGHCSP 205 (504)
T ss_pred -HHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCC--cCCEEEeccccchhhhcccccCcCCCCCCc
Confidence 55442 44 78999999999999999999 999 67789999999854210 00
Q ss_pred -------------hHHHHH------HHHHHHHhhcc---CCCCEEEeccc--cccCCCC-CCCc-------------cCC
Q 012093 254 -------------DTLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDRA-------------KFN 295 (471)
Q Consensus 254 -------------~~~~~w------~~~~~~~Ir~~---Dp~~lV~~g~~--g~~~~~~-~~~~-------------~~n 295 (471)
+.++.- ...+++.+|+. .|.-.|.+... ..++.+. ++.. ...
T Consensus 206 ~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~d 285 (504)
T PLN02814 206 NKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLK 285 (504)
T ss_pred ccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 011111 12445667764 56655554322 1222211 1000 000
Q ss_pred CC---cccc------------cccchhhhhcCCCCceEEEEeccCCCccCC---C--------Ch-------------hH
Q 012093 296 PN---SYAT------------QVGTDFIRNHQTLGVDFASVHIYADSWISQ---T--------IS-------------DA 336 (471)
Q Consensus 296 p~---~~~~------------~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~-------------~~ 336 (471)
|. .|.. ....|.. . ....+||+++++|....... . .. ..
T Consensus 286 p~~~G~YP~~~~~~l~~~lp~~~~~d~~-~-ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (504)
T PLN02814 286 PLVFGDYPDEMKRTLGSRLPVFSEEESE-Q-VKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSS 363 (504)
T ss_pred HHhCCCccHHHHHHHhcCCCCCCHHHHH-H-hcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcC
Confidence 10 0100 0000100 0 12457999999995432110 0 00 00
Q ss_pred HHH--HHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCC
Q 012093 337 HLQ--FTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDG 412 (471)
Q Consensus 337 ~~~--~~~~~i~~~~~~a~~~~~k-Pviv~EfG~~~~~~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g 412 (471)
... ..+.-|+..+....+++++ ||+|+|.|++....| ..+..|.+|+++++..+.+++++|.++.|++.|++.|+
T Consensus 364 ~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDn- 442 (504)
T PLN02814 364 FFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDL- 442 (504)
T ss_pred CCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh-
Confidence 011 1234455555555444666 799999999754322 34678999999999999999999999999999999998
Q ss_pred CCCCCC----CceEEeCCCc--cHHHHHHHHHHHHHhcccC
Q 012093 413 TDYMND----GYAIVLSKSP--STSNIISLHSTRIATFNSL 447 (471)
Q Consensus 413 ~~~~~d----gf~i~~~~~~--~~~~~i~~~~~~~~~~~~~ 447 (471)
.+|.+ +||+++.|-. ++.|++|+++..++.+-..
T Consensus 443 -fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~ 482 (504)
T PLN02814 443 -YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNG 482 (504)
T ss_pred -hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhc
Confidence 77754 6888887744 4589999999999888644
No 14
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.85 E-value=6.6e-20 Score=192.49 Aligned_cols=306 Identities=13% Similarity=0.184 Sum_probs=206.6
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.+.++|+++||++|+|+.|+++ +|+++.|. .|.+|++.++.++++|+.|.++||..|++|+ ||+. |.
T Consensus 53 Y~ry~eDi~L~~~lG~~~yRfSI----sWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H~dl----P~-- 121 (469)
T PRK13511 53 YHRYPEDLKLAEEFGVNGIRISI----AWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-HFDT----PE-- 121 (469)
T ss_pred hhhhHHHHHHHHHhCCCEEEeec----cHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-CCCC----cH--
Confidence 57899999999999999999975 59999886 4679999999999999999999999999997 4643 33
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh----
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG---- 253 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g---- 253 (471)
|....|+ |.+++..+.|.+|.+.+++| |++ |-.|...|||..... +.+
T Consensus 122 -~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~ 181 (469)
T PRK13511 122 -ALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD 181 (469)
T ss_pred -HHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCcc
Confidence 5544444 88999999999999999999 988 777999999985531 111
Q ss_pred --hHHHHH------HHHHHHHhhccCCCCEEEeccc--cccCCC--CCCCc-------------cCCCC---ccccc---
Q 012093 254 --DTLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPS--APDRA-------------KFNPN---SYATQ--- 302 (471)
Q Consensus 254 --~~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~--g~~~~~--~~~~~-------------~~np~---~~~~~--- 302 (471)
..++.- ..++++.+|+..++-.|.+... .+++.+ .++.. ..+|- .|...
T Consensus 182 ~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~ 261 (469)
T PRK13511 182 LAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETME 261 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHH
Confidence 111111 1345677888777655554322 122221 11100 00110 01000
Q ss_pred --------ccc--hhh----hhcCC--CCceEEEEeccCCCccCC------------C-------------------C-h
Q 012093 303 --------VGT--DFI----RNHQT--LGVDFASVHIYADSWISQ------------T-------------------I-S 334 (471)
Q Consensus 303 --------~g~--d~~----~~~~~--~~iD~~s~H~Y~~~w~~~------------~-------------------~-~ 334 (471)
.|. .+. ..... ..+||+++++|....... . . .
T Consensus 262 ~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (469)
T PRK13511 262 GVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVP 341 (469)
T ss_pred HHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCC
Confidence 000 000 00011 247999999995432110 0 0 0
Q ss_pred hHHH--HHHHHHHHHHHHHHHHhcCC--cEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHHhhhcCCCccceee
Q 012093 335 DAHL--QFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLL 405 (471)
Q Consensus 335 ~~~~--~~~~~~i~~~~~~a~~~~~k--Pviv~EfG~~~~~~----g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~ 405 (471)
.... ...+.-|+..+....+++++ ||+|+|.|++.... + ..+..|.+|+++++..+.+++++|.++.|+++
T Consensus 342 ~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~ 421 (469)
T PRK13511 342 TTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFI 421 (469)
T ss_pred cCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0000 01123345545544444665 79999999974421 1 34678999999999999999999999999999
Q ss_pred cccCCCCCCCCCC----CceEEeCCCccHHHHHHHHHHHHHhcc
Q 012093 406 WQLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFN 445 (471)
Q Consensus 406 W~~~~~g~~~~~d----gf~i~~~~~~~~~~~i~~~~~~~~~~~ 445 (471)
|++.|+ .+|.+ +||+++.|-+++.|+.|+++..++.+-
T Consensus 422 WSl~Dn--fEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~i 463 (469)
T PRK13511 422 WSLMDV--FSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKLA 463 (469)
T ss_pred cccccc--cchhcCccCccceEEECCCcCccccccHHHHHHHHH
Confidence 999998 77754 688888887778899999999988765
No 15
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.85 E-value=2.2e-19 Score=188.26 Aligned_cols=307 Identities=16% Similarity=0.216 Sum_probs=206.5
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-.+.++|+++||++|+|+.|+++ +|+++.|. .+.+|++.++.++++|+.|.++||.+|++|+ ||+. |.
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSI----sWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H~dl----P~- 137 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSI----AWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-HFEM----PL- 137 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecc----cceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-CCCC----CH-
Confidence 46889999999999999999975 59998886 3568999999999999999999999999996 4543 33
Q ss_pred hhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC-----C-----C---
Q 012093 185 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-----S-----D--- 250 (471)
Q Consensus 185 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~-----~-----~--- 250 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|...|||... . .
T Consensus 138 --~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 138 --HLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKH--KVKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred --HHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEEecCccccccccccccccccccc
Confidence 44432 43 78899999999999999999 999 47789999999742 0 0
Q ss_pred --CChh-----HHHHH------HHHHHHHhhccCCCCEEEeccc--cccCCCC-CCCc------------cCCCC---cc
Q 012093 251 --PSGD-----TLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDRA------------KFNPN---SY 299 (471)
Q Consensus 251 --~~g~-----~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~--g~~~~~~-~~~~------------~~np~---~~ 299 (471)
+.+. .++.- ..++.+.+|+..|...|.+... .+++.+. ++.. ...|. .|
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 1110 11111 1345677888888766655432 2233211 1000 00110 01
Q ss_pred ccc-------ccc--hhh----hhcCCCCceEEEEeccCCCccCC----------------CCh-h-HHH--HHHHHHHH
Q 012093 300 ATQ-------VGT--DFI----RNHQTLGVDFASVHIYADSWISQ----------------TIS-D-AHL--QFTKSWME 346 (471)
Q Consensus 300 ~~~-------~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~----------------~~~-~-~~~--~~~~~~i~ 346 (471)
... .+. ++. .......+||+++++|....... .+. . ... ...+.-|+
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 000 000 000 00112467999999995422110 000 0 001 12344456
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhhh-cCCCccceeecccCCCCCCCCCCC-
Q 012093 347 AHIEDAEKYLRMPVLFTEFGVSAKD----TG-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMNDG- 419 (471)
Q Consensus 347 ~~~~~a~~~~~kPviv~EfG~~~~~----~g-~s~~~r~~y~~~~~~~i~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg- 419 (471)
..+....+++++||+|+|.|++... .| ..+..|.+|+++++..+.++++ +|.++.|++.|++.|+ .+|..|
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--fEw~~G~ 435 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--VSFTTGQ 435 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hcccCCC
Confidence 5565555558999999999998532 12 3467899999999999999995 8999999999999998 677554
Q ss_pred ----ceEEeCCCc-----cHHHHHHHHHHHHHhcc
Q 012093 420 ----YAIVLSKSP-----STSNIISLHSTRIATFN 445 (471)
Q Consensus 420 ----f~i~~~~~~-----~~~~~i~~~~~~~~~~~ 445 (471)
||+++.|-. ++.|++|+++..++.+-
T Consensus 436 y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii 470 (477)
T PRK15014 436 YSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVI 470 (477)
T ss_pred ccCccceEEECCCCCCCcccceecccHHHHHHHHH
Confidence 888887633 46899999999988765
No 16
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.84 E-value=2.1e-19 Score=188.12 Aligned_cols=307 Identities=18% Similarity=0.238 Sum_probs=206.5
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-.+.++|+++|+++|+|+.|+.+ +|+++.|. ++.+|++.++.+|++|+.|.++||.+|++|+ +|+. |.
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~si----~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-H~~~----P~- 139 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRTSI----AWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC-HFDV----PM- 139 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEeec----eeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-CCCC----CH-
Confidence 57889999999999999999965 58888876 3467999999999999999999999999996 4543 33
Q ss_pred hhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC----------CCh
Q 012093 185 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PSG 253 (471)
Q Consensus 185 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~----------~~g 253 (471)
|.... |+ |.+++..+.|.+|++.+++| |++ .|-.|...|||..... +.+
T Consensus 140 --~l~~~~GG--------W~~~~~~~~F~~ya~~~~~~--------fgd--~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 140 --HLVTEYGS--------WRNRKMVEFFSRYARTCFEA--------FDG--LVKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred --HHHHhcCC--------CCCHHHHHHHHHHHHHHHHH--------hcC--cCCeEEeecchhhhhccCccccCcccCCC
Confidence 44332 33 78999999999999999999 999 5677999999984321 111
Q ss_pred h-----HHHHH------HHHHHHHhhccCCCCEEEecccc--ccCCCC-CCCc------------cCCCC---cccc---
Q 012093 254 D-----TLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPSA-PDRA------------KFNPN---SYAT--- 301 (471)
Q Consensus 254 ~-----~~~~w------~~~~~~~Ir~~Dp~~lV~~g~~g--~~~~~~-~~~~------------~~np~---~~~~--- 301 (471)
. .++.- ..++++.+|+..|+-.|.+.... +++.+. ++.. ...|. .|..
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 0 11111 12446777888787666554322 232211 1000 00110 0100
Q ss_pred ----cccc--hhh---hhcCCCCceEEEEeccCCCccCC--------C-Ch----------hHHH--HHHHHHHHHHHHH
Q 012093 302 ----QVGT--DFI---RNHQTLGVDFASVHIYADSWISQ--------T-IS----------DAHL--QFTKSWMEAHIED 351 (471)
Q Consensus 302 ----~~g~--d~~---~~~~~~~iD~~s~H~Y~~~w~~~--------~-~~----------~~~~--~~~~~~i~~~~~~ 351 (471)
..+. ++. .......+||+++++|....... . .. .... ...+.-|+..+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 0000 000 00012457999999995432110 0 00 0001 1134445665655
Q ss_pred HHHhcCCcEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCCC-----ce
Q 012093 352 AEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDG-----YA 421 (471)
Q Consensus 352 a~~~~~kPviv~EfG~~~~~~----g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dg-----f~ 421 (471)
..+++++|++|+|.|++.... + ..+..|.+|+++++.++.+++++|.++.|++.|++.|+ .+|..| ||
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~y~~RfG 437 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGEMSKRYG 437 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCCccceee
Confidence 555589999999999985421 1 34678999999999999999999999999999999998 777554 88
Q ss_pred EEeCCCc-----cHHHHHHHHHHHHHhcc
Q 012093 422 IVLSKSP-----STSNIISLHSTRIATFN 445 (471)
Q Consensus 422 i~~~~~~-----~~~~~i~~~~~~~~~~~ 445 (471)
+++.|-+ +..|++|+++..++.+-
T Consensus 438 Lv~VD~~~~~~~t~~R~pK~S~~wy~~ii 466 (474)
T PRK09852 438 FVYVDRDDAGNGTLTRTRKKSFWWYKKVI 466 (474)
T ss_pred eEEECCCCCCCcccceecccHHHHHHHHH
Confidence 8888744 56899999999988775
No 17
>PLN02849 beta-glucosidase
Probab=99.84 E-value=1.7e-19 Score=189.86 Aligned_cols=305 Identities=16% Similarity=0.185 Sum_probs=205.2
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCC-CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP-SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~-g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
-.+.++|+++||++|+|+.|+++ +|++++|.. |.+|++.++.++++|+.|.++||..|++|+ ||+. |.
T Consensus 78 YhrY~eDI~Lm~~lG~~aYRfSI----sWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H~dl----P~-- 146 (503)
T PLN02849 78 YHKYKEDVKLMVETGLDAFRFSI----SWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-HYDH----PQ-- 146 (503)
T ss_pred HHhHHHHHHHHHHcCCCeEEEec----cHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-CCCC----cH--
Confidence 57899999999999999999975 599998863 679999999999999999999999999997 5653 33
Q ss_pred hhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CChh--
Q 012093 186 KWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSGD-- 254 (471)
Q Consensus 186 ~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g~-- 254 (471)
|.... |+ |.+++..+.|.+|.+.+++| |++ .|-.|...|||..... +.+.
T Consensus 147 -~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgD--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 207 (503)
T PLN02849 147 -YLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGN--HVKFWTTINEANIFTIGGYNDGITPPGRCS 207 (503)
T ss_pred -HHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEecchhhhhhchhhhccCCCCccc
Confidence 54442 44 78999999999999999999 999 6778999999985421 1110
Q ss_pred --------------HHHHH------HHHHHHHhhcc---CCCCEEEeccc--cccCCCC-CCCc-------------cCC
Q 012093 255 --------------TLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDRA-------------KFN 295 (471)
Q Consensus 255 --------------~~~~w------~~~~~~~Ir~~---Dp~~lV~~g~~--g~~~~~~-~~~~-------------~~n 295 (471)
.++.- ..++++.+|+. .|...|.+-.. .+++.+. ++.. ...
T Consensus 208 ~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~d 287 (503)
T PLN02849 208 SPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLE 287 (503)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhH
Confidence 11111 12445667765 35655554322 2232211 1000 001
Q ss_pred CC---ccccc------------ccchhhhhcCCCCceEEEEeccCCCccCC---C------C-h--------h-H---HH
Q 012093 296 PN---SYATQ------------VGTDFIRNHQTLGVDFASVHIYADSWISQ---T------I-S--------D-A---HL 338 (471)
Q Consensus 296 p~---~~~~~------------~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~---~------~-~--------~-~---~~ 338 (471)
|. .|... ...|.. . ....+||+++++|....... . + . . . ..
T Consensus 288 p~~~G~YP~~~~~~l~~~lp~~~~~d~~-~-i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 365 (503)
T PLN02849 288 PLIFGDYPDEMKRTIGSRLPVFSKEESE-Q-VKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEY 365 (503)
T ss_pred HHhCCCccHHHHHHHhcCCCCCCHHHHH-H-hcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCC
Confidence 10 01000 000000 0 12457999999995422110 0 0 0 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCC--CC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCC
Q 012093 339 QFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKD--TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTD 414 (471)
Q Consensus 339 ~~~~~~i~~~~~~a~~~~~k-Pviv~EfG~~~~~--~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~ 414 (471)
...+.-|+..+....+++++ ||+|+|.|++... .+ ..+..|.+|+++++..+.+++++|.++.|++.|++.|+ .
T Consensus 366 ~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn--f 443 (503)
T PLN02849 366 AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDL--Y 443 (503)
T ss_pred eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--h
Confidence 11233455555555444777 7999999998542 11 34678999999999999999999999999999999998 7
Q ss_pred CCCC----CceEEeCCCc--cHHHHHHHHHHHHHhcc
Q 012093 415 YMND----GYAIVLSKSP--STSNIISLHSTRIATFN 445 (471)
Q Consensus 415 ~~~d----gf~i~~~~~~--~~~~~i~~~~~~~~~~~ 445 (471)
+|.+ +||+++.|-. +..|++|+++..++.+-
T Consensus 444 EW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii 480 (503)
T PLN02849 444 ELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFL 480 (503)
T ss_pred chhccccCccceEEECCCCCCcceecccHHHHHHHHH
Confidence 7754 7888887744 35899999999988874
No 18
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=1.1e-19 Score=184.82 Aligned_cols=306 Identities=18% Similarity=0.240 Sum_probs=208.0
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-.+.++|+++||++|+|+.|+++ +|+++-|..+ ..|++.++.+|++++.|.++||..+++|+ ||+. |.
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI----~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-Hfd~----P~- 127 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSI----EWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-HFDL----PL- 127 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeee----eEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-ccCC----cH-
Confidence 57899999999999999999976 4888877653 58999999999999999999999999996 4653 32
Q ss_pred hhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC---------Ch-
Q 012093 185 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP---------SG- 253 (471)
Q Consensus 185 ~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~---------~g- 253 (471)
|.... |+ |.+.+..++|.+|.+.+++| |++ -|-.|.+.|||...... ..
T Consensus 128 --~L~~~ygG--------W~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~~ 187 (460)
T COG2723 128 --WLQKPYGG--------WENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGIV 187 (460)
T ss_pred --HHhhccCC--------ccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCcc
Confidence 33333 32 88999999999999999999 998 68889999999976421 10
Q ss_pred ---hHHHHHH------HHHHHHhhccCCCCE--EEeccccccCCCC-CCCc--------------------cCCCCcccc
Q 012093 254 ---DTLQSWI------QEMAVYVKSIDAKHL--VEIGLEGFYGPSA-PDRA--------------------KFNPNSYAT 301 (471)
Q Consensus 254 ---~~~~~w~------~~~~~~Ir~~Dp~~l--V~~g~~g~~~~~~-~~~~--------------------~~np~~~~~ 301 (471)
..++... ..+.+.+|++.|.-. ++......|+.+. ++.+ +..|. +.-
T Consensus 188 ~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~-~~~ 266 (460)
T COG2723 188 DPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPE-YLE 266 (460)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCH-HHH
Confidence 1122221 244677888888622 2333333444332 1110 01111 000
Q ss_pred -----------cccchhhhhcCCCCceEEEEeccC-CCc-----------cCCCCh--------h-HHH--HHHHHHHHH
Q 012093 302 -----------QVGTDFIRNHQTLGVDFASVHIYA-DSW-----------ISQTIS--------D-AHL--QFTKSWMEA 347 (471)
Q Consensus 302 -----------~~g~d~~~~~~~~~iD~~s~H~Y~-~~w-----------~~~~~~--------~-~~~--~~~~~~i~~ 347 (471)
....|.. .+....+||+++++|. ... .....+ + ... +..+.-|+.
T Consensus 267 ~~~~~~~~~~~~~~~Dl~-~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~ 345 (460)
T COG2723 267 KELEENGILPEIEDGDLE-ILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYD 345 (460)
T ss_pred HHHHhcCCCcccCcchHH-HHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHH
Confidence 0001111 1122358999999997 211 100000 0 011 113334555
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCC----C
Q 012093 348 HIEDAEKYLRMPVLFTEFGVSAKDT----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----G 419 (471)
Q Consensus 348 ~~~~a~~~~~kPviv~EfG~~~~~~----g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~d----g 419 (471)
.+....+++++|++|+|.|+...+. +-.+..|.+|+++++..+.+++.+|..+.|++.|++.|. .+|.. +
T Consensus 346 ~l~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~~gy~kR 423 (460)
T COG2723 346 ILEKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWANGYKKR 423 (460)
T ss_pred HHHHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchhhccccc
Confidence 5555554589999999999775532 235689999999999999999999999999999999997 44543 7
Q ss_pred ceEEeCCCcc-HHHHHHHHHHHHHhccc
Q 012093 420 YAIVLSKSPS-TSNIISLHSTRIATFNS 446 (471)
Q Consensus 420 f~i~~~~~~~-~~~~i~~~~~~~~~~~~ 446 (471)
||+++.|-++ +.|+.|++..+++.+..
T Consensus 424 YGli~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 424 YGLVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred cccEEEcccccceeeecCceeeeHHHHh
Confidence 8888887666 58888888888776653
No 19
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=8.4e-20 Score=187.46 Aligned_cols=286 Identities=20% Similarity=0.268 Sum_probs=155.8
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+++.+++||+.|+++|+|+||+..+ .|..++|++|.|| |..||++|+.|.++||+|||.+... ..|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~-----~~P--- 73 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA-----APP--- 73 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT-----TS----
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc-----ccc---
Confidence 4689999999999999999998655 4888999999997 7779999999999999999987421 112
Q ss_pred hhhhh----------cCCCC---CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCC
Q 012093 186 KWGKA----------AGLNL---TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS 252 (471)
Q Consensus 186 ~W~~~----------~G~~~---~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~ 252 (471)
.|... .|... ......+++|.+++...++++++++| |++||+|++|++.||+....+-+
T Consensus 74 ~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 74 AWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--S
T ss_pred cchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCC
Confidence 34321 11110 11223467899999999999999999 99999999999999998742100
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHhhcc
Q 012093 253 --------------------------------------------------------------GDTLQSWIQEMAVYVKSI 270 (471)
Q Consensus 253 --------------------------------------------------------------g~~~~~w~~~~~~~Ir~~ 270 (471)
...+.++++.+++.||+.
T Consensus 146 ~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~ 225 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 012445677889999999
Q ss_pred CCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCc-cCCCChhHHHHHHHHHHHHHH
Q 012093 271 DAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSW-ISQTISDAHLQFTKSWMEAHI 349 (471)
Q Consensus 271 Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w-~~~~~~~~~~~~~~~~i~~~~ 349 (471)
+|+++|+....+.. ..+.|... ....+|+++++.||... ..............+.++.
T Consensus 226 ~p~~~vt~n~~~~~-----------------~~~~d~~~--~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~-- 284 (374)
T PF02449_consen 226 DPDHPVTTNFMGSW-----------------FNGIDYFK--WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRS-- 284 (374)
T ss_dssp STT-EEE-EE-TT--------------------SS-HHH--HGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHH--
T ss_pred CCCceEEeCccccc-----------------cCcCCHHH--HHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHh--
Confidence 99999997543210 01123322 24668999999998710 0000001112222222221
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCCCceEEeCCC-
Q 012093 350 EDAEKYLRMPVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKS- 427 (471)
Q Consensus 350 ~~a~~~~~kPviv~EfG~~~~~~g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dgf~i~~~~~- 427 (471)
. + .+||++|.|.-.....-+ .....+...++.. .+.++.. | ..|.++|+|.......-.-.++|+.-|+
T Consensus 285 --~-~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~---~~~~~A~-G-a~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 285 --L-A-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLW---SWQAIAH-G-ADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp --H-T-TT--EEEEEE--S--SSSSS-----TTHHHHH---HHHHHHT-T--S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred --h-c-CCCceEeecCCCCCCCCccCCCCCCCCHHHHH---HHHHHHH-h-CCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 1 2 699999999954422100 1111122223221 2333333 4 7899999997652211112477777666
Q ss_pred ccHH--HHHHHHHHHHHh
Q 012093 428 PSTS--NIISLHSTRIAT 443 (471)
Q Consensus 428 ~~~~--~~i~~~~~~~~~ 443 (471)
+.+. +=+++-++.+++
T Consensus 356 ~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 356 EPTRRYREVAQLGRELKK 373 (374)
T ss_dssp -B-HHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhc
Confidence 3222 223444444544
No 20
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.83 E-value=7.2e-21 Score=199.78 Aligned_cols=305 Identities=16% Similarity=0.234 Sum_probs=199.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
..+.++||++||++|+|+.|+.+ +|++++|. .|.+|++.++.++++|+.+.++||..|++|+ +|+. |
T Consensus 57 y~~y~eDi~l~~~lg~~~yRfsi----~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H~~~----P-- 125 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRFSI----SWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-HFDL----P-- 125 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-SS------B--
T ss_pred hhhhhHHHHHHHhhccceeeeec----chhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-eccc----c--
Confidence 57899999999999999999975 59999998 5999999999999999999999999999997 4532 3
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--------CCh---
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG--- 253 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--------~~g--- 253 (471)
.|....|+ |.+++..+.|.+|.+.+++| |++ .|-.|-..|||..... +.+
T Consensus 126 -~~l~~~gg--------w~~~~~~~~F~~Ya~~~~~~--------~gd--~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~ 186 (455)
T PF00232_consen 126 -LWLEDYGG--------WLNRETVDWFARYAEFVFER--------FGD--RVKYWITFNEPNVFALLGYLYGGFPPGRDS 186 (455)
T ss_dssp -HHHHHHTG--------GGSTHHHHHHHHHHHHHHHH--------HTT--TBSEEEEEETHHHHHHHHHTSSSSTTCSST
T ss_pred -cceeeccc--------ccCHHHHHHHHHHHHHHHHH--------hCC--CcceEEeccccceeeccccccccccccccc
Confidence 36554443 78899999999999999999 998 5777999999985321 111
Q ss_pred -hH-------HHHHHHHHHHHhhccCCCCEEEecccc--ccCCCC--CCC---c-----------------cCCCCcc--
Q 012093 254 -DT-------LQSWIQEMAVYVKSIDAKHLVEIGLEG--FYGPSA--PDR---A-----------------KFNPNSY-- 299 (471)
Q Consensus 254 -~~-------~~~w~~~~~~~Ir~~Dp~~lV~~g~~g--~~~~~~--~~~---~-----------------~~np~~~-- 299 (471)
.. +..-..++.+.+|+..|+..|.+.... +++.+. ++. + +..|...
T Consensus 187 ~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~ 266 (455)
T PF00232_consen 187 LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKE 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHH
T ss_pred cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhh
Confidence 11 111234567888998898888664321 122111 110 0 0001000
Q ss_pred -cccc-------cchhhhhcCCCCceEEEEeccCCCccC-----CCC--------h---------hHHHHH--HHHHHHH
Q 012093 300 -ATQV-------GTDFIRNHQTLGVDFASVHIYADSWIS-----QTI--------S---------DAHLQF--TKSWMEA 347 (471)
Q Consensus 300 -~~~~-------g~d~~~~~~~~~iD~~s~H~Y~~~w~~-----~~~--------~---------~~~~~~--~~~~i~~ 347 (471)
-... ..|... ....+||+++++|...... ... . .+...| .+..|+.
T Consensus 267 ~~~~~~~lp~ft~ed~~~--ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~ 344 (455)
T PF00232_consen 267 YLGERGILPEFTEEDKEL--IKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRD 344 (455)
T ss_dssp HHGGGTSSTTSGHHHHHH--HTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHH
T ss_pred ccccccccccccchhhhc--ccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhh
Confidence 0000 001111 1357999999999532110 000 0 000100 1334455
Q ss_pred HHHHHHHhcC-CcEEEEecCCCCCCC---C-CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCC----
Q 012093 348 HIEDAEKYLR-MPVLFTEFGVSAKDT---G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND---- 418 (471)
Q Consensus 348 ~~~~a~~~~~-kPviv~EfG~~~~~~---g-~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~d---- 418 (471)
.+....+.++ +||+|+|.|++.... + ..+..|.+|+++++..+.+++++|.++.|+++|++.|+ .+|.+
T Consensus 345 ~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~Gy~~ 422 (455)
T PF00232_consen 345 VLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAEGYKK 422 (455)
T ss_dssp HHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGGGS
T ss_pred hhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--cccccCccC
Confidence 5554433355 999999999987542 1 23678999999999999999999999999999999998 77764
Q ss_pred CceEEeCC-CccHHHHHHHHHHHHHhcc
Q 012093 419 GYAIVLSK-SPSTSNIISLHSTRIATFN 445 (471)
Q Consensus 419 gf~i~~~~-~~~~~~~i~~~~~~~~~~~ 445 (471)
+||+++.| .+++.|+.|+++..++.+-
T Consensus 423 rfGl~~VD~~~~~~R~pK~S~~~y~~~i 450 (455)
T PF00232_consen 423 RFGLVYVDFFDTLKRTPKKSAYWYKDFI 450 (455)
T ss_dssp E--SEEEETTTTTEEEEBHHHHHHHHHH
T ss_pred ccCceEEcCCCCcCeeeccHHHHHHHHH
Confidence 67888888 8889999999999888763
No 21
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.65 E-value=7.2e-15 Score=142.68 Aligned_cols=276 Identities=16% Similarity=0.273 Sum_probs=134.1
Q ss_pred CCCCcEEEeCCeEE--ECCEEEEEEEeeccchhhh----ccCCC-chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC
Q 012093 68 DDWQMVQKQGNQFV--VNDQPFYVNGFNTYWLMVF----AADQS-TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT 140 (471)
Q Consensus 68 ~~~gfv~v~g~~f~--~nGkp~~~~G~N~~~~~~~----~~~~~-~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~ 140 (471)
.....|+++|++|. .+|++|++||+.+.-.+.. ..||. +.+...+|+..||++|+|+||+......
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~------- 78 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPS------- 78 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TT-------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCC-------
Confidence 34566999999998 7999999999996432221 12443 4688999999999999999999754211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCH--HHHHHHHHHHHHH
Q 012093 141 SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHT--TLKSYYKAHVKTV 218 (471)
Q Consensus 141 ~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~--~~~~~~~~~~~~l 218 (471)
..-|..+.+..+.|||||++|... .+... + .+| .+-..+.++...+
T Consensus 79 ----------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~--------------r-----~~P~~sw~~~l~~~~~~v 126 (314)
T PF03198_consen 79 ----------KNHDECMSAFADAGIYVILDLNTP---NGSIN--------------R-----SDPAPSWNTDLLDRYFAV 126 (314)
T ss_dssp ----------S--HHHHHHHHHTT-EEEEES-BT---TBS----------------T-----TS------HHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHhCCCEEEEecCCC---Ccccc--------------C-----CCCcCCCCHHHHHHHHHH
Confidence 012566788899999999999532 11110 0 123 4445566666677
Q ss_pred HhccccccccccCCCCcEEEEEeecCCCCCCCC--ChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCC
Q 012093 219 LNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP--SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNP 296 (471)
Q Consensus 219 v~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~--~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np 296 (471)
+.- ++..|+++++-.+||.-..... ..+-+++.++.|-++||+... |.|-+|-.. .+..+... .-
T Consensus 127 id~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVGYsa---aD~~~~r~-~~ 193 (314)
T PF03198_consen 127 IDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVGYSA---ADDAEIRQ-DL 193 (314)
T ss_dssp HHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE------TTTHH-HH
T ss_pred HHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCceeEEc---cCChhHHH-HH
Confidence 776 8889999999999998765322 124467778889999998654 555565321 11100000 00
Q ss_pred CcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCh
Q 012093 297 NSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNT 376 (471)
Q Consensus 297 ~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~ 376 (471)
..|- ..|. ....+||++++.|. |...+++... -.....+.... +..|++++|||.-...+.
T Consensus 194 a~Yl-~Cg~------~~~~iDf~g~N~Y~--WCg~Stf~~S------Gy~~l~~~f~~-y~vPvffSEyGCn~~~pR--- 254 (314)
T PF03198_consen 194 ANYL-NCGD------DDERIDFFGLNSYE--WCGDSTFETS------GYDRLTKEFSN-YSVPVFFSEYGCNTVTPR--- 254 (314)
T ss_dssp HHHT-TBTT-----------S-EEEEE------SS--HHHH------SHHHHHHHHTT--SS-EEEEEE---SSSS----
T ss_pred HHHh-cCCC------cccccceeeeccce--ecCCCccccc------cHHHHHHHhhC-CCCCeEEcccCCCCCCCc---
Confidence 0010 0111 12478999999995 7644444321 01122222333 789999999998664321
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCCCceEEeCC
Q 012093 377 SFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSK 426 (471)
Q Consensus 377 ~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dgf~i~~~~ 426 (471)
-+.++ ..++..-.. +.+.|++...|..+. .+||++--+
T Consensus 255 -----~f~ev-~aly~~~Mt-~v~SGGivYEy~~e~-----n~yGlV~~~ 292 (314)
T PF03198_consen 255 -----TFTEV-PALYSPEMT-DVWSGGIVYEYFQEA-----NNYGLVEIS 292 (314)
T ss_dssp -------THH-HHHTSHHHH-TTEEEEEES-SB--S-----SS--SEEE-
T ss_pred -----cchHh-HHhhCccch-hheeceEEEEEeccC-----CceEEEEEc
Confidence 12221 223332222 358899999998762 347766643
No 22
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.57 E-value=5.8e-13 Score=137.14 Aligned_cols=306 Identities=15% Similarity=0.204 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCC---CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP---SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 183 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~---g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~ 183 (471)
-.+..+|+++|+++|+++.|+++ .|+++-|.- +..|++.++.+-.+|++..++||..+++|+ +|+. |+
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRFSI----sWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-HwDl----Pq 160 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRFSI----SWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-HWDL----PQ 160 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEEEe----ehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-cCCC----CH
Confidence 45788999999999999999976 488776642 458999999999999999999999999997 5654 33
Q ss_pred hhhhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC------------
Q 012093 184 YVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD------------ 250 (471)
Q Consensus 184 y~~W~~~-~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~------------ 250 (471)
+..+ .|+ |-+++..+.|++|.+-..++ ++| .|-.|-..|||.....
T Consensus 161 ---~LeDeYgG--------wLn~~ivedF~~yA~~CF~~--------fGD--rVK~WiT~NEP~v~s~~gY~~G~~aPGr 219 (524)
T KOG0626|consen 161 ---ALEDEYGG--------WLNPEIVEDFRDYADLCFQE--------FGD--RVKHWITFNEPNVFSIGGYDTGTKAPGR 219 (524)
T ss_pred ---HHHHHhcc--------ccCHHHHHHHHHHHHHHHHH--------hcc--cceeeEEecccceeeeehhccCCCCCCC
Confidence 2222 222 66899999999999999999 999 6888999999983321
Q ss_pred -----------CCh-hH------HHHHHHHHHHHhhcc-CC--CCEEEeccc-cccCCCC--CCCc------cCCCCcc-
Q 012093 251 -----------PSG-DT------LQSWIQEMAVYVKSI-DA--KHLVEIGLE-GFYGPSA--PDRA------KFNPNSY- 299 (471)
Q Consensus 251 -----------~~g-~~------~~~w~~~~~~~Ir~~-Dp--~~lV~~g~~-g~~~~~~--~~~~------~~np~~~- 299 (471)
.++ +. +.--..++.+..|+. .+ +-.|.+... .|+-... .+.. ..-.-+|
T Consensus 220 Cs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~ 299 (524)
T KOG0626|consen 220 CSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWF 299 (524)
T ss_pred CCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhh
Confidence 000 00 100112233333332 11 223433322 1211111 1100 0000001
Q ss_pred -c-ccccchh---h---------------hhcCCCCceEEEEeccCCCccCC----C----C---------h--------
Q 012093 300 -A-TQVGTDF---I---------------RNHQTLGVDFASVHIYADSWISQ----T----I---------S-------- 334 (471)
Q Consensus 300 -~-~~~g~d~---~---------------~~~~~~~iD~~s~H~Y~~~w~~~----~----~---------~-------- 334 (471)
. ...| |+ + ........||+.+++|....... . + .
T Consensus 300 l~p~~~G-dYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (524)
T KOG0626|consen 300 LEPLTFG-DYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLI 378 (524)
T ss_pred hcccccC-CcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccc
Confidence 0 0000 11 0 01112457999999995321100 0 0 0
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHh-cCCcEEEEecCCCCCCCC-------CChHHHHHHHHHHHHHHHHhhh-cCCCc
Q 012093 335 -----DAHLQFTKSWMEAHIEDAEKY-LRMPVLFTEFGVSAKDTG-------YNTSFRDTLISSVYKTLLNSTK-KGGSG 400 (471)
Q Consensus 335 -----~~~~~~~~~~i~~~~~~a~~~-~~kPviv~EfG~~~~~~g-------~s~~~r~~y~~~~~~~i~~~~~-~~~~~ 400 (471)
...+...+.-+++.+..++.+ .+.|++|+|.|......+ ..+..|.+|++..+..+.+++. .+.+.
T Consensus 379 ~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv 458 (524)
T KOG0626|consen 379 GPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNV 458 (524)
T ss_pred cccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCce
Confidence 000111223355555555543 468899999999886322 3467899999999999999987 67788
Q ss_pred cceeecccCCCCCCCCCC----CceEEeCCC-ccHHHHHHHHHHHHHhcc
Q 012093 401 AGSLLWQLFPDGTDYMND----GYAIVLSKS-PSTSNIISLHSTRIATFN 445 (471)
Q Consensus 401 ~G~~~W~~~~~g~~~~~d----gf~i~~~~~-~~~~~~i~~~~~~~~~~~ 445 (471)
.|.++|++.|+ ++|.+ +|++++.|- ....|..|.++++++.+=
T Consensus 459 ~GYf~WSLmDn--fEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl 506 (524)
T KOG0626|consen 459 KGYFVWSLLDN--FEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFL 506 (524)
T ss_pred eeEEEeEcccc--hhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHH
Confidence 99999999998 78876 677777652 236788999999888654
No 23
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.55 E-value=1.6e-13 Score=136.70 Aligned_cols=243 Identities=18% Similarity=0.227 Sum_probs=137.2
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC--CCcCcCCChhhhhhh
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT--NNWDAYGGKAQYVKW 187 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~--~~w~~~gG~~~y~~W 187 (471)
...-|+.||+.|+|.||+=++.+... .|..+ ++..-.+...|+++||+|+|++| +.|.+.|....=..|
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~------~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW 96 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYD------GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAW 96 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TT------TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTC
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcc------cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccC
Confidence 35678999999999999965433210 24444 45555677889999999999998 334443211000012
Q ss_pred hhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEEeecCCCCCCCC------ChhHHHHHH
Q 012093 188 GKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP------SGDTLQSWI 260 (471)
Q Consensus 188 ~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p-~I~~wel~NEp~~~~~~------~g~~~~~w~ 260 (471)
.. .+-.+..++..+|.+.+++. +++.- .+-+++++||.+..... .-+.+.+.+
T Consensus 97 ~~------------~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll 156 (332)
T PF07745_consen 97 AN------------LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLL 156 (332)
T ss_dssp TS------------SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHH
T ss_pred CC------------CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHH
Confidence 10 12366778888888888887 65542 34558999998765421 235677888
Q ss_pred HHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHH
Q 012093 261 QEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQF 340 (471)
Q Consensus 261 ~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~ 340 (471)
+..+++||+.+|+..|.+....-.... . . .. | .+.... ..-..|++++++||. |.. .+..
T Consensus 157 ~ag~~AVr~~~p~~kV~lH~~~~~~~~---~--~-~~-~-----f~~l~~-~g~d~DviGlSyYP~-w~~------~l~~ 216 (332)
T PF07745_consen 157 NAGIKAVREVDPNIKVMLHLANGGDND---L--Y-RW-F-----FDNLKA-AGVDFDVIGLSYYPF-WHG------TLED 216 (332)
T ss_dssp HHHHHHHHTHSSTSEEEEEES-TTSHH---H--H-HH-H-----HHHHHH-TTGG-SEEEEEE-ST-TST-------HHH
T ss_pred HHHHHHHHhcCCCCcEEEEECCCCchH---H--H-HH-H-----HHHHHh-cCCCcceEEEecCCC-Ccc------hHHH
Confidence 999999999999999988753210000 0 0 00 1 011111 234578999999996 432 1222
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCC---C-------------C--CChHHHHHHHHHHHHHHHHhhhcCCCccc
Q 012093 341 TKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD---T-------------G--YNTSFRDTLISSVYKTLLNSTKKGGSGAG 402 (471)
Q Consensus 341 ~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~---~-------------g--~s~~~r~~y~~~~~~~i~~~~~~~~~~~G 402 (471)
+..-+. ...++++|||+|.|.|.+... . + .+.+.|.+|++++.+.+.+ .- ++.+.|
T Consensus 217 l~~~l~----~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p-~~~g~G 290 (332)
T PF07745_consen 217 LKNNLN----DLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VP-NGGGLG 290 (332)
T ss_dssp HHHHHH----HHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S---TTEEE
T ss_pred HHHHHH----HHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hc-cCCeEE
Confidence 222232 222337999999999987651 0 1 1567789998887776543 21 234899
Q ss_pred eeecc
Q 012093 403 SLLWQ 407 (471)
Q Consensus 403 ~~~W~ 407 (471)
.|||.
T Consensus 291 vfYWe 295 (332)
T PF07745_consen 291 VFYWE 295 (332)
T ss_dssp EEEE-
T ss_pred EEeec
Confidence 99993
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.48 E-value=1.7e-12 Score=130.12 Aligned_cols=168 Identities=15% Similarity=0.268 Sum_probs=111.7
Q ss_pred eEEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHH
Q 012093 79 QFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVIS 158 (471)
Q Consensus 79 ~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~ 158 (471)
+|++||||+++.+.-.|+... .++.+++.|+.||++|+|+|-+.++ |.-+++.+|.||-+....|+++|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~------p~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRI------PPEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE------HHHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccC------ChhHHHHHHHHHHhCCcceEEEecc----ccccCCCCCcccccchhhHHHHHH
Confidence 589999999999999887643 2688999999999999999999876 777889999999888889999999
Q ss_pred HHHHcCCEEEEecC----CCcCcCCChhhhhhhhhhc-CCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 012093 159 EAKKYKIRLILSLT----NNWDAYGGKAQYVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 233 (471)
Q Consensus 159 ~a~~~Gi~vil~l~----~~w~~~gG~~~y~~W~~~~-G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~ 233 (471)
+|+++||+||+-+- ..| ++||.| .|.... +. ..--+||.+.++.+++++.+++.+-+ ..+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~-~~gG~P---~Wl~~~~~~-----~~R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEW-DNGGLP---AWLLRKPDI-----RLRTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTB-GGGG-----GGGGGSTTS------SSSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceecccc-cchhhh---hhhhccccc-----cccccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 99999999999863 222 246654 475532 11 11245788888888888877766333 335555
Q ss_pred CcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCC
Q 012093 234 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 273 (471)
Q Consensus 234 p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~ 273 (471)
-.||+.++-||..... .-.++++.+.+..++.-+.
T Consensus 139 GpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 6799999999998432 2334445555555555444
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.46 E-value=3.9e-12 Score=125.83 Aligned_cols=168 Identities=21% Similarity=0.321 Sum_probs=101.3
Q ss_pred CCeEE-ECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCC-c------c--cc-CCCC---
Q 012093 77 GNQFV-VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQ-W------R--AL-QTSP--- 142 (471)
Q Consensus 77 g~~f~-~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~-~------~--~~-~~~~--- 142 (471)
+..|. .||+||+..|-..|.+... .+.++++..|+..|+.|+|+||+.+++... . + ++ ...+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~----~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHR----LTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH------HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHHHHHhhC----CCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 45677 7999999999776544332 246888999999999999999998765311 1 0 11 1111
Q ss_pred --CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh--hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHH
Q 012093 143 --SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY--VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTV 218 (471)
Q Consensus 143 --g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y--~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~l 218 (471)
..+|++.|+.+|++|+.|.++||.+.|.+. |.. .| ..|... .+.-..+..+++++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~-----~~~~~~Wg~~------------~~~m~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGC-----PYVPGTWGFG------------PNIMPPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HH-----HHH-------------------TTSS-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECC-----cccccccccc------------ccCCCHHHHHHHHHHH
Confidence 137899999999999999999999987764 311 12 124210 0112245678899999
Q ss_pred HhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEeccc
Q 012093 219 LNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLE 281 (471)
Q Consensus 219 v~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~ 281 (471)
++| |+.-|+|+ |.|+||- ... ....+..++|++.||+.||.+|+|+...
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~~----~~~~~~w~~~~~~i~~~dp~~L~T~H~~ 187 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FDT----EKTRADWDAMARGIKENDPYQLITIHPC 187 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS---T----TSSHHHHHHHHHHHHHH--SS-EEEEE-
T ss_pred HHH--------HhcCCCCE-EEecCcc-CCC----CcCHHHHHHHHHHHHhhCCCCcEEEeCC
Confidence 999 99999998 9999999 211 2233344899999999999889998653
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.43 E-value=2.2e-11 Score=118.49 Aligned_cols=229 Identities=19% Similarity=0.319 Sum_probs=142.6
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHH
Q 012093 135 WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAH 214 (471)
Q Consensus 135 ~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~ 214 (471)
|..++|.+|.|| ++.+|++++.|+++||+|---.. -|.. +.+.|... ...++.++.+.++
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~-----~~P~W~~~-----------~~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS-----QTPDWVFN-----------LSKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc-----cCCHhhhc-----------CCHHHHHHHHHHH
Confidence 667889999997 78889999999999999843111 1322 12346432 1145678899999
Q ss_pred HHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-----Ch-h-HHHHHHHHHHHHhhccCCCCEEEeccccccCCC
Q 012093 215 VKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-----SG-D-TLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPS 287 (471)
Q Consensus 215 ~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~-----~g-~-~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~ 287 (471)
++.+++| |++ .|..|++.|||...... .- + .-.+|+....+++|+.||+..+.+..- +..
T Consensus 63 i~~v~~r--------y~g--~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy---~~~ 129 (254)
T smart00633 63 IKTVVGR--------YKG--KIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY---NTE 129 (254)
T ss_pred HHHHHHH--------hCC--cceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc---CCc
Confidence 9999999 987 48889999999864310 00 0 012678899999999999988877531 111
Q ss_pred CCCCccCCCCcccccccchhhhhc--CCCCceEEEE--eccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Q 012093 288 APDRAKFNPNSYATQVGTDFIRNH--QTLGVDFASV--HIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFT 363 (471)
Q Consensus 288 ~~~~~~~np~~~~~~~g~d~~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~ 363 (471)
.+... .. .+ ..+...+ ..-.+|-+++ |++... .+ .. .+.+.++...+ .|+||+|+
T Consensus 130 ~~~~k--~~-~~-----~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~----~~----~~~~~l~~~~~-~g~pi~iT 188 (254)
T smart00633 130 EPNAK--RQ-AI-----YELVKKLKAKGVPIDGIGLQSHLSLGS----PN----IA----EIRAALDRFAS-LGLEIQIT 188 (254)
T ss_pred CccHH--HH-HH-----HHHHHHHHHCCCccceeeeeeeecCCC----CC----HH----HHHHHHHHHHH-cCCceEEE
Confidence 00000 00 00 1111111 1123776665 544221 01 11 23333333344 69999999
Q ss_pred ecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCCCCCCCCC--CceEEeCC
Q 012093 364 EFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND--GYAIVLSK 426 (471)
Q Consensus 364 EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~d--gf~i~~~~ 426 (471)
|+++.... +.+.|+++++.++..+++. +.+.|.++|.+.+. ..|.. ..+++..+
T Consensus 189 E~dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~~~~~~~L~d~~ 244 (254)
T smart00633 189 ELDISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWLDGGAPLLFDAN 244 (254)
T ss_pred EeecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--CcccCCCCceeECCC
Confidence 99987642 3367888988887777654 45789999999986 34544 33455433
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=99.37 E-value=2.3e-11 Score=132.49 Aligned_cols=183 Identities=19% Similarity=0.276 Sum_probs=135.3
Q ss_pred EEEeCCeEEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHH
Q 012093 73 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 152 (471)
Q Consensus 73 v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ 152 (471)
|++++..|++||+|+++.+-..|+... .++.+++.|+.||++|+|+|=+.++ |.-+||.+|.||-+....
T Consensus 30 v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~~G~~dF~G~~D 99 (840)
T PLN03059 30 VSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPSPGNYYFEDRYD 99 (840)
T ss_pred EEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEec----ccccCCCCCeeeccchHH
Confidence 677888999999999999999987632 3789999999999999999999987 666899999999988999
Q ss_pred HHHHHHHHHHcCCEEEEecC----CCcCcCCChhhhhhhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccc
Q 012093 153 LDFVISEAKKYKIRLILSLT----NNWDAYGGKAQYVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTN 227 (471)
Q Consensus 153 lD~~l~~a~~~Gi~vil~l~----~~w~~~gG~~~y~~W~~~-~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg 227 (471)
|.++|++|++.||+||+-.- ..| ++||.|. |... +|. .---+||.+.++.++++++++.++-. .+
T Consensus 100 L~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGlP~---WL~~~~~i-----~~Rs~d~~fl~~v~~~~~~l~~~l~~-~~ 169 (840)
T PLN03059 100 LVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGFPV---WLKYVPGI-----EFRTDNGPFKAAMQKFTEKIVDMMKS-EK 169 (840)
T ss_pred HHHHHHHHHHcCCEEEecCCcceeeee-cCCCCch---hhhcCCCc-----ccccCCHHHHHHHHHHHHHHHHHHhh-cc
Confidence 99999999999999999863 234 3688764 6542 221 11245788999898898888887310 12
Q ss_pred cccCCCCcEEEEEeecCCCCCCC---CChhHHHHHHHHHHHHhhccCCCCEEEe
Q 012093 228 LTYKNDPTIFAWELMNEPRCTSD---PSGDTLQSWIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 228 ~~yk~~p~I~~wel~NEp~~~~~---~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
..+++---||+.++-||-+.... ..+..+.+|+++|+ ++.+-..|..+
T Consensus 170 l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~---~~~Gi~VPl~t 220 (840)
T PLN03059 170 LFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMA---VKLGTGVPWVM 220 (840)
T ss_pred eeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHH---HHcCCCcceEE
Confidence 22455557999999999876421 12345556666554 44555555443
No 28
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.30 E-value=3.2e-12 Score=103.72 Aligned_cols=75 Identities=31% Similarity=0.627 Sum_probs=47.1
Q ss_pred cCCCCcEEEEEeecC-CCCCC--------CCChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCccc
Q 012093 230 YKNDPTIFAWELMNE-PRCTS--------DPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYA 300 (471)
Q Consensus 230 yk~~p~I~~wel~NE-p~~~~--------~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~ 300 (471)
|+++|+|++|+|+|| |+... ....+.+.+|+++++++||++||++|||+|..+. . .
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~-----------~- 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---D-----------W- 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S---------------T-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---C-----------H-
Confidence 999999999999999 66221 0123678899999999999999999999885321 0 1
Q ss_pred ccccchhhhhcCCCCceEEEEecc
Q 012093 301 TQVGTDFIRNHQTLGVDFASVHIY 324 (471)
Q Consensus 301 ~~~g~d~~~~~~~~~iD~~s~H~Y 324 (471)
..+.. ...+.+||+++|.|
T Consensus 70 ----~~~~~-~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 ----EDLEQ-LQAENLDVISFHPY 88 (88)
T ss_dssp ----THHHH-S--TT-SSEEB-EE
T ss_pred ----HHHHH-hchhcCCEEeeecC
Confidence 11222 23578999999998
No 29
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.2e-10 Score=120.71 Aligned_cols=115 Identities=30% Similarity=0.349 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCC----CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQT----SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~----~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
..++++..||++|+|+||+.... | .+++ .|.......+..||++|+.|.++||+|++++|.. .|+....
T Consensus 74 ~~~~~~~~ik~~G~n~VRiPi~~---~-~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~~~~~ 146 (407)
T COG2730 74 ITEEDFDQIKSAGFNAVRIPIGY---W-ALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGGNNGH 146 (407)
T ss_pred hhhhHHHHHHHcCCcEEEcccch---h-hhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCCCCCc
Confidence 34899999999999999995431 2 1222 3434435666699999999999999999999852 2221110
Q ss_pred hhhhhhcCCCCCCCCCcCC-CHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 012093 185 VKWGKAAGLNLTSDDEFFS-HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 247 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~-~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~ 247 (471)
. ..+ ....+. .....+.+.+.+++++.| |++.+.|+++++.|||..
T Consensus 147 ~----~s~-----~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 E----HSG-----YTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred C----ccc-----ccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 0 000 112233 355678999999999999 999999999999999995
No 30
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=6.7e-10 Score=113.64 Aligned_cols=199 Identities=15% Similarity=0.241 Sum_probs=123.6
Q ss_pred ccccccccCCCcceeeccccccceeEEeeccceeeeecccCCCCCCcEEEeCCe--EEECCEEEEEEEeeccchhhhccC
Q 012093 26 SSWTVFGVNGDWGFESTVEEIENHLSHASTHHGIYDLQVREDDDWQMVQKQGNQ--FVVNDQPFYVNGFNTYWLMVFAAD 103 (471)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~gfv~v~g~~--f~~nGkp~~~~G~N~~~~~~~~~~ 103 (471)
..||+.|-..+-...+++.- +.-..|.-..++++++.+....+. +|+. |.+||.|++++|.|-.-...+- +
T Consensus 280 e~wwp~g~g~q~~y~~~v~~-gg~~~ekki~frtvelv~~p~kp~-----~g~nfyfkin~~pvflkg~nwip~s~f~-d 352 (867)
T KOG2230|consen 280 ERWWPNGMGEQKLYDVVVSM-GGQVKEKKIGFKTVELVQDPKKPE-----KGRNFYFKINDEPVFLKGTNWIPVSMFR-D 352 (867)
T ss_pred cccCCCCCCcceeEEEEEec-CceeeeeeeeeEEEEEeecCCCCC-----CCceeEEEEcCcEEEeecCCccChHHHH-h
Confidence 56777777666555555544 222233334445554432111111 2333 5699999999999933222211 3
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 183 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~ 183 (471)
..+.+.++--|+..++.|+|++|+|.. |.|.. |++..+|++.||.| |++.-
T Consensus 353 r~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~lad~lGilV-------WQD~M---- 403 (867)
T KOG2230|consen 353 RENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQLADSLGILV-------WQDMM---- 403 (867)
T ss_pred hHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHHhhhcccee-------hhhhH----
Confidence 345677888899999999999999852 34433 45679999999998 44421
Q ss_pred hhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC--C-------C--
Q 012093 184 YVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--P-------S-- 252 (471)
Q Consensus 184 y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~--~-------~-- 252 (471)
.+. ..+-++.+..+..++-++.-+.| .+.||+|+.|+--||-....- . .
T Consensus 404 ---FAC---------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~ 463 (867)
T KOG2230|consen 404 ---FAC---------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIFSGNNENEAALVQNWYGTSFERDRF 463 (867)
T ss_pred ---HHh---------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEEeCCCccHHHHHhhhhcccccccch
Confidence 111 12346778888888899999999 999999999999999875310 0 0
Q ss_pred -hhHHHHHHHH-HHHHhhccCCCCEEEecc
Q 012093 253 -GDTLQSWIQE-MAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 253 -g~~~~~w~~~-~~~~Ir~~Dp~~lV~~g~ 280 (471)
.+...-.+.+ +.+..+..+|++|..+.+
T Consensus 464 ~~kdyvlly~~~i~el~l~~~~srPfi~SS 493 (867)
T KOG2230|consen 464 ESKDYVLLYANVIHELKLVSHSSRPFIVSS 493 (867)
T ss_pred hhhhhhHHHHHHHHHHHhhcCCCCCceecC
Confidence 0122222333 334444568888866554
No 31
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=3.6e-10 Score=121.45 Aligned_cols=174 Identities=17% Similarity=0.274 Sum_probs=126.1
Q ss_pred eCCeEEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHH
Q 012093 76 QGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDF 155 (471)
Q Consensus 76 ~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~ 155 (471)
++..+.++|+++.+.|..++.... .++.+.+||+.||++|+|+||+..| .|..++|..|.|+-+ .+|.
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~~------p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fdf~---~~D~ 71 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPERW------PRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFDFT---WLDE 71 (673)
T ss_pred cccceeeCCceeEEeccccChHHC------CHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccCcc---cchH
Confidence 466788999999999998764322 3588999999999999999999555 388899999999855 5566
Q ss_pred H-HHHHHHcCCEEEEecCCCcCcCCChhh-----hhhhhhh--cCC---CCCCCCCcCCCHHHHHHHHHHHHHHHhcccc
Q 012093 156 V-ISEAKKYKIRLILSLTNNWDAYGGKAQ-----YVKWGKA--AGL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNT 224 (471)
Q Consensus 156 ~-l~~a~~~Gi~vil~l~~~w~~~gG~~~-----y~~W~~~--~G~---~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~ 224 (471)
. ++.|.+.||+||+..-. .|+.+. |+.|... .|. +...+...++++.+++.....++.+++|
T Consensus 72 ~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer--- 144 (673)
T COG1874 72 IFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER--- 144 (673)
T ss_pred HHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH---
Confidence 5 99999999999998621 222221 2223221 110 1123345678888888888888889888
Q ss_pred ccccccCCCCcEEEEEeecCCCCCC---CCChhHHHHHHHHHHHHhhccCC
Q 012093 225 FTNLTYKNDPTIFAWELMNEPRCTS---DPSGDTLQSWIQEMAVYVKSIDA 272 (471)
Q Consensus 225 ~tg~~yk~~p~I~~wel~NEp~~~~---~~~g~~~~~w~~~~~~~Ir~~Dp 272 (471)
.|++||+|++|.+-||-.+.. ..+...++.|+++-+..|+.++.
T Consensus 145 ----~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 145 ----LYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred ----HhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 399999999999999988732 22345677788876666665543
No 32
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=7.3e-09 Score=98.90 Aligned_cols=251 Identities=17% Similarity=0.180 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC--CCcCcCCChhhhhh
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT--NNWDAYGGKAQYVK 186 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~--~~w~~~gG~~~y~~ 186 (471)
...+-|+.+|++|+|.||+-++.+.--..-++--|-.+ .++..-++-..|+..||+|++++| ++|.+.+-...-..
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPka 141 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKA 141 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHH
Confidence 34456899999999999996554321000000012222 234444666788999999999997 34444221000011
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEEeecCCCCCCC-CCh-----hHHHHH
Q 012093 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSD-PSG-----DTLQSW 259 (471)
Q Consensus 187 W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p-~I~~wel~NEp~~~~~-~~g-----~~~~~w 259 (471)
|.. .+-+..+.+.-.+.+..++. .++.- .+-+.+++||...... +.| +.+.+.
T Consensus 142 W~~------------l~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L 201 (403)
T COG3867 142 WEN------------LNFEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAAL 201 (403)
T ss_pred hhh------------cCHHHHHHHHHHHHHHHHHH--------HHHcCCCccceEeccccCCceeccCCCCcChHHHHHH
Confidence 211 11244556666666666665 55543 2345799999986643 222 345566
Q ss_pred HHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhh-cCCCCceEEEEeccCCCccCCCChhHHH
Q 012093 260 IQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQTLGVDFASVHIYADSWISQTISDAHL 338 (471)
Q Consensus 260 ~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~-~~~~~iD~~s~H~Y~~~w~~~~~~~~~~ 338 (471)
+++.+++||+.+|+.+|.+....- .+++-|.. -|... ...-..|++..-+||-+.+ . +
T Consensus 202 ~n~g~~avrev~p~ikv~lHla~g----------~~n~~y~~----~fd~ltk~nvdfDVig~SyYpyWhg-t------l 260 (403)
T COG3867 202 LNAGIRAVREVSPTIKVALHLAEG----------ENNSLYRW----IFDELTKRNVDFDVIGSSYYPYWHG-T------L 260 (403)
T ss_pred HHHHhhhhhhcCCCceEEEEecCC----------CCCchhhH----HHHHHHHcCCCceEEeeeccccccC-c------H
Confidence 788899999999999988763210 01111210 01111 1223467899999997432 1 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCC---CC-------------CC--ChHHHHHHHHHHHHHHHHhhhcCCCc
Q 012093 339 QFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAK---DT-------------GY--NTSFRDTLISSVYKTLLNSTKKGGSG 400 (471)
Q Consensus 339 ~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~---~~-------------g~--s~~~r~~y~~~~~~~i~~~~~~~~~~ 400 (471)
..+..-+. ..|. +++|-|+|.|.+.... .. ++ +.+.|+.+++++.+.+..--. +.+
T Consensus 261 ~nL~~nl~---dia~-rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~--~~G 334 (403)
T COG3867 261 NNLTTNLN---DIAS-RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPK--SNG 334 (403)
T ss_pred HHHHhHHH---HHHH-HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCC--CCc
Confidence 11111121 1233 3899999999987322 11 11 345678888887776654322 236
Q ss_pred cceeeccc
Q 012093 401 AGSLLWQL 408 (471)
Q Consensus 401 ~G~~~W~~ 408 (471)
.|.|||.=
T Consensus 335 lGvFYWEp 342 (403)
T COG3867 335 LGVFYWEP 342 (403)
T ss_pred eEEEEecc
Confidence 78999963
No 33
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.94 E-value=1.3e-08 Score=108.20 Aligned_cols=276 Identities=16% Similarity=0.230 Sum_probs=131.9
Q ss_pred hhHHHHHHHHHH-hCCCCEEEEee-ccCCCccccC-CCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 012093 107 RGKVSELFHQAS-SAGLTVCRTWA-FNDGQWRALQ-TSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 181 (471)
Q Consensus 107 ~~~~~~dl~~mk-~~G~N~vR~~~-~~~~~~~~~~-~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~ 181 (471)
++.++..|..++ +.|+..||+|. |.++--...+ ...| .|| |..+|+++|...+.||+.+++|.--
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~------- 107 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFM------- 107 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-------
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEec-------
Confidence 467777777776 79999999975 4332110011 1122 155 8999999999999999999998411
Q ss_pred hhhhhhhhhcCCCCCCCCCcC-----CC----HHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEEeecCCCCCCCC
Q 012093 182 AQYVKWGKAAGLNLTSDDEFF-----SH----TTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP 251 (471)
Q Consensus 182 ~~y~~W~~~~G~~~~~~~~f~-----~~----~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p-~I~~wel~NEp~~~~~~ 251 (471)
+. +.. .+ ....|. +. .++.+....++++++.| |+... .-..||++|||+.....
T Consensus 108 p~---~~~-~~----~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~R--------YG~~ev~~W~fEiWNEPd~~~f~ 171 (486)
T PF01229_consen 108 PM---ALA-SG----YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDR--------YGIEEVSTWYFEIWNEPDLKDFW 171 (486)
T ss_dssp -G---GGB-SS------EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHH--------HHHHHHTTSEEEESS-TTSTTTS
T ss_pred hh---hhc-CC----CCccccccCCcCCcccHHHHHHHHHHHHHHHHhh--------cCCccccceeEEeCcCCCccccc
Confidence 10 000 00 000111 11 34555556666666666 65321 12358999999985422
Q ss_pred ---ChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCc
Q 012093 252 ---SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSW 328 (471)
Q Consensus 252 ---~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w 328 (471)
....+.+.++..++.||+.||...|. +.++... ..+ |- ....++... ..-.+||+|+|.|+...
T Consensus 172 ~~~~~~ey~~ly~~~~~~iK~~~p~~~vG--Gp~~~~~-~~~--------~~-~~~l~~~~~-~~~~~DfiS~H~y~~~~ 238 (486)
T PF01229_consen 172 WDGTPEEYFELYDATARAIKAVDPELKVG--GPAFAWA-YDE--------WC-EDFLEFCKG-NNCPLDFISFHSYGTDS 238 (486)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHH-TTSEEE--EEEEETT--TH--------HH-HHHHHHHHH-CT---SEEEEEEE-BES
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCccc--Ccccccc-HHH--------HH-HHHHHHHhc-CCCCCCEEEEEeccccc
Confidence 22467888899999999999998764 2211000 000 10 001122222 22457999999998542
Q ss_pred cCC--CChhHHHHHHHH---HHHHHHHHHHH--hcCCcEEEEecCCCCCCCC--CChHHHHHHHHHHHHHHHHhhhcCCC
Q 012093 329 ISQ--TISDAHLQFTKS---WMEAHIEDAEK--YLRMPVLFTEFGVSAKDTG--YNTSFRDTLISSVYKTLLNSTKKGGS 399 (471)
Q Consensus 329 ~~~--~~~~~~~~~~~~---~i~~~~~~a~~--~~~kPviv~EfG~~~~~~g--~s~~~r~~y~~~~~~~i~~~~~~~~~ 399 (471)
... ......+..... -++........ ..+.|+.++||+....... .....+.+|+-. .+++.. ++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~--~~~ 313 (486)
T PF01229_consen 239 AEDINENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND--GAF 313 (486)
T ss_dssp ESE-SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--GGT
T ss_pred ccccchhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--hhh
Confidence 211 011111111111 12222122222 1368899999987664311 223355666433 133332 123
Q ss_pred ccceeecccCCC------CCCCCCCCceEEeCC
Q 012093 400 GAGSLLWQLFPD------GTDYMNDGYAIVLSK 426 (471)
Q Consensus 400 ~~G~~~W~~~~~------g~~~~~dgf~i~~~~ 426 (471)
..+..+|.+.|. ...+...||++....
T Consensus 314 l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 314 LDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp -SEEEES-SBS---TTSS-SSSSSS-S-SEECC
T ss_pred hhhhhccchhhhhhccCCCCCceecchhhhhcc
Confidence 567889999863 113445689988755
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.81 E-value=1e-07 Score=95.95 Aligned_cols=246 Identities=16% Similarity=0.271 Sum_probs=145.9
Q ss_pred HHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCC
Q 012093 114 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGL 193 (471)
Q Consensus 114 l~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~ 193 (471)
...+-...+|.+=.- +..-|..+++.+|.|+ ++..|.+++.|+++||+|--=.. -|.. . -+.|....
T Consensus 27 ~~~~~~~~Fn~~t~e--N~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~L-vW~~--~---~P~w~~~~-- 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTPE--NEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTL-VWHS--Q---TPDWVFNL-- 93 (320)
T ss_dssp HHHHHHHH-SEEEES--STTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEE-EESS--S---S-HHHHTS--
T ss_pred HHHHHHHhCCeeeec--cccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeE-EEcc--c---ccceeeec--
Confidence 333334567866541 2234777888899887 77889999999999999952110 1322 1 23465431
Q ss_pred CCCCCCCcCCCH---HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-C---hhHH-----HHHHH
Q 012093 194 NLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-S---GDTL-----QSWIQ 261 (471)
Q Consensus 194 ~~~~~~~f~~~~---~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~-~---g~~~-----~~w~~ 261 (471)
.-++.. ..++...++++.+++| |++...|.+|++.|||-..... . ...+ ..++.
T Consensus 94 ------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 94 ------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp ------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 012222 3788999999999999 9988889999999999875420 0 0111 24778
Q ss_pred HHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhc--CCCCceEEE--EeccCCCccCCCChhHH
Q 012093 262 EMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNH--QTLGVDFAS--VHIYADSWISQTISDAH 337 (471)
Q Consensus 262 ~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~--~~~~iD~~s--~H~Y~~~w~~~~~~~~~ 337 (471)
.+.+..|+.||+..+.+..-+.......+ . + ..++..+ ..-.||-++ .|+-....
T Consensus 160 ~aF~~A~~~~P~a~L~~NDy~~~~~~k~~------~-~-----~~lv~~l~~~gvpIdgIG~Q~H~~~~~~--------- 218 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYNDYNIESPAKRD------A-Y-----LNLVKDLKARGVPIDGIGLQSHFDAGYP--------- 218 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEESSTTSTHHHH------H-H-----HHHHHHHHHTTHCS-EEEEEEEEETTSS---------
T ss_pred HHHHHHHHhCCCcEEEeccccccchHHHH------H-H-----HHHHHHHHhCCCccceechhhccCCCCC---------
Confidence 88999999999988776532211100000 0 0 0111111 122366544 46554321
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCC---CChHHHHHHHHHHHHHHHHhhhcCC--CccceeecccCCCC
Q 012093 338 LQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG---YNTSFRDTLISSVYKTLLNSTKKGG--SGAGSLLWQLFPDG 412 (471)
Q Consensus 338 ~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g---~s~~~r~~y~~~~~~~i~~~~~~~~--~~~G~~~W~~~~~g 412 (471)
.. .+.+.++.... .|.||.|+|+.+...... .....|++++++++..+++. + .+.|..+|.+.|.
T Consensus 219 ~~----~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~----~~~~v~git~Wg~~D~- 288 (320)
T PF00331_consen 219 PE----QIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSH----PPAAVEGITWWGFTDG- 288 (320)
T ss_dssp HH----HHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHT----THCTEEEEEESSSBTT-
T ss_pred HH----HHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhC----CccCCCEEEEECCCCC-
Confidence 11 23333444344 799999999988775421 12567788888777766654 5 6899999999997
Q ss_pred CCCCCC
Q 012093 413 TDYMND 418 (471)
Q Consensus 413 ~~~~~d 418 (471)
..|..
T Consensus 289 -~sW~~ 293 (320)
T PF00331_consen 289 -YSWRP 293 (320)
T ss_dssp -GSTTG
T ss_pred -CcccC
Confidence 45643
No 35
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.2e-07 Score=99.89 Aligned_cols=153 Identities=20% Similarity=0.297 Sum_probs=119.3
Q ss_pred EEEeCCeEEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHH
Q 012093 73 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 152 (471)
Q Consensus 73 v~v~g~~f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ 152 (471)
|..++.+|.+||+|+.+.....|+... +++.+++.++.+|+.|+|+|-+.+| |.-++|.+|.|+-+.--.
T Consensus 20 v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVf----Wn~Hep~~g~y~FsG~~D 89 (649)
T KOG0496|consen 20 VTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVF----WNLHEPSPGKYDFSGRYD 89 (649)
T ss_pred EeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeee----cccccCCCCcccccchhH
Confidence 667788999999999999999887633 3788999999999999999999988 556789999998776666
Q ss_pred HHHHHHHHHHcCCEEEEecC----CCcCcCCChhhhhhhhhh-cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccc
Q 012093 153 LDFVISEAKKYKIRLILSLT----NNWDAYGGKAQYVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTN 227 (471)
Q Consensus 153 lD~~l~~a~~~Gi~vil~l~----~~w~~~gG~~~y~~W~~~-~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg 227 (471)
|-++|.+|++.|+||+|-+- ..| ++||.+. |.+. +|. .---+|+.++++++++++.||.+.. .
T Consensus 90 lvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P~---wL~~~pg~-----~~Rt~nepfk~~~~~~~~~iv~~mk---~ 157 (649)
T KOG0496|consen 90 LVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLPW---WLRNVPGI-----VFRTDNEPFKAEMERWTTKIVPMMK---K 157 (649)
T ss_pred HHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcch---hhhhCCce-----EEecCChHHHHHHHHHHHHHHHHHH---H
Confidence 77889999999999999864 234 3678763 4432 121 1123478889999999999998755 3
Q ss_pred cccCCCCcEEEEEeecCCCC
Q 012093 228 LTYKNDPTIFAWELMNEPRC 247 (471)
Q Consensus 228 ~~yk~~p~I~~wel~NEp~~ 247 (471)
.-+++---||+-++.||-+.
T Consensus 158 L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 158 LFASQGGPIILVQIENEYGN 177 (649)
T ss_pred HHhhcCCCEEEEEeechhhH
Confidence 34666556888999999984
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.44 E-value=5.2e-06 Score=75.35 Aligned_cols=142 Identities=18% Similarity=0.321 Sum_probs=97.0
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEE-ee-ccCCC-ccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRT-WA-FNDGQ-WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 180 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~-~~-~~~~~-~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG 180 (471)
..+.++++++|+.|++.|+++|=+ |. +.+.. ++.-- .++.+....-+.|+.++++|+++||+|++-|... .
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~-~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~-~---- 89 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL-SPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD-P---- 89 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc-cCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC-c----
Confidence 456899999999999999999854 11 21111 11000 1223333445788999999999999999998521 1
Q ss_pred hhhhhhhhhhcCCCCCCCCCcCCCHHH-HHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHH
Q 012093 181 KAQYVKWGKAAGLNLTSDDEFFSHTTL-KSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSW 259 (471)
Q Consensus 181 ~~~y~~W~~~~G~~~~~~~~f~~~~~~-~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w 259 (471)
.| |. . .+++. .+.-+..+..+.++ |++||++-+|=|-.|+..... ...+.
T Consensus 90 --~~--w~-~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~ 140 (166)
T PF14488_consen 90 --DY--WD-Q------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPER 140 (166)
T ss_pred --hh--hh-c------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHH
Confidence 11 11 0 22222 22234577778888 999999999999999998642 23445
Q ss_pred HHHHHHHhhccCCCCEEEecc
Q 012093 260 IQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 260 ~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
.+.+.+++|++.|+.||.+..
T Consensus 141 ~~~l~~~lk~~s~~~Pv~ISp 161 (166)
T PF14488_consen 141 FALLGKYLKQISPGKPVMISP 161 (166)
T ss_pred HHHHHHHHHHhCCCCCeEEec
Confidence 688889999999999998863
No 37
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=3.4e-05 Score=73.33 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=122.6
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
-+.++++.||++++..+. .||+.. .|. ..|..++.++.+.|++|++-+. ..
T Consensus 60 KSa~~~~sDLe~l~~~t~-~IR~Y~-sDC-----------------n~le~v~pAa~~~g~kv~lGiw---~t------- 110 (305)
T COG5309 60 KSADQVASDLELLASYTH-SIRTYG-SDC-----------------NTLENVLPAAEASGFKVFLGIW---PT------- 110 (305)
T ss_pred cCHHHHHhHHHHhccCCc-eEEEee-ccc-----------------hhhhhhHHHHHhcCceEEEEEe---ec-------
Confidence 357899999999999998 999965 211 2234667899999999998762 10
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHH
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 264 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~ 264 (471)
+.......+-+..-+.- +...+.|....++||.-...+.....+.+.+...-
T Consensus 111 --------------------dd~~~~~~~til~ay~~--------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vr 162 (305)
T COG5309 111 --------------------DDIHDAVEKTILSAYLP--------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVR 162 (305)
T ss_pred --------------------cchhhhHHHHHHHHHhc--------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHH
Confidence 00111112112222222 66778999999999998776656678888889999
Q ss_pred HHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHH
Q 012093 265 VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSW 344 (471)
Q Consensus 265 ~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~ 344 (471)
..+++.+-+-+|+... .| . .+..||. .+...||+..|.-+- |.....-...-.|+.+.
T Consensus 163 sav~~agy~gpV~T~d-sw-~-----~~~~np~--------------l~~~SDfia~N~~aY-wd~~~~a~~~~~f~~~q 220 (305)
T COG5309 163 SAVKEAGYDGPVTTVD-SW-N-----VVINNPE--------------LCQASDFIAANAHAY-WDGQTVANAAGTFLLEQ 220 (305)
T ss_pred HHHHhcCCCCceeecc-cc-e-----eeeCChH--------------Hhhhhhhhhcccchh-ccccchhhhhhHHHHHH
Confidence 9999888888877542 11 0 0001221 234457665554443 32111111111222112
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCCC-----CChHHHHHHHHHHHHHH
Q 012093 345 MEAHIEDAEKYLRMPVLFTEFGVSAKDTG-----YNTSFRDTLISSVYKTL 390 (471)
Q Consensus 345 i~~~~~~a~~~~~kPviv~EfG~~~~~~g-----~s~~~r~~y~~~~~~~i 390 (471)
++ .++.+.. .+|+++|+|.|.+.++.. -+.+++..+++.+...+
T Consensus 221 ~e-~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~ 269 (305)
T COG5309 221 LE-RVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL 269 (305)
T ss_pred HH-HHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh
Confidence 22 1222222 249999999999988632 25678888866654433
No 38
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.00022 Score=69.80 Aligned_cols=117 Identities=25% Similarity=0.447 Sum_probs=81.1
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-CcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHH
Q 012093 134 QWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN-NWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYK 212 (471)
Q Consensus 134 ~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~ 212 (471)
-|..+++++|.|+ |+.-|.+++-|+++||.+-- |+ -|.. +.++|.... + .+-+...+.+.
T Consensus 68 Kwe~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhG--HtLvW~~-----q~P~W~~~~--------e-~~~~~~~~~~e 128 (345)
T COG3693 68 KWEAIEPERGRFN---FEAADAIANFARKHNMPLHG--HTLVWHS-----QVPDWLFGD--------E-LSKEALAKMVE 128 (345)
T ss_pred ccccccCCCCccC---ccchHHHHHHHHHcCCeecc--ceeeecc-----cCCchhhcc--------c-cChHHHHHHHH
Confidence 4777888899887 67778899999999998721 11 0211 223454210 1 33477889999
Q ss_pred HHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC-------ChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 213 AHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 213 ~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~-------~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
+++..++.| ||+. +++|++.||+-..... .+-.-.+|++......|+.||+..+.+.
T Consensus 129 ~hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~N 192 (345)
T COG3693 129 EHIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIN 192 (345)
T ss_pred HHHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEee
Confidence 999999999 9995 8999999999763210 0112335667778888999998766553
No 39
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.12 E-value=5.2e-05 Score=73.14 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=75.0
Q ss_pred EEEeecCCCCCCCC--ChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcC-CC
Q 012093 238 AWELMNEPRCTSDP--SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQ-TL 314 (471)
Q Consensus 238 ~wel~NEp~~~~~~--~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~-~~ 314 (471)
.+..+|||+..... +.+...+...++.+.+|. +...|......+-+...+. ...| -.+|..... .-
T Consensus 68 ~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~-----g~~W----l~~F~~~~~~~~ 136 (239)
T PF11790_consen 68 HLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPG-----GLDW----LSQFLSACARGC 136 (239)
T ss_pred ceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCC-----ccHH----HHHHHHhcccCC
Confidence 35678999986521 233444444555666664 4333321111111100000 0002 124444433 34
Q ss_pred CceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 012093 315 GVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNST 394 (471)
Q Consensus 315 ~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~ 394 (471)
.+||+++|.|... ... +..+++.+.+..+|||+|+|||........+.+.+.+|+++++..+.+
T Consensus 137 ~~D~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~-- 200 (239)
T PF11790_consen 137 RVDFIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS-- 200 (239)
T ss_pred CccEEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc--
Confidence 8999999999322 112 233334443347899999999986533345677888998877665543
Q ss_pred hcCCCccceeecc
Q 012093 395 KKGGSGAGSLLWQ 407 (471)
Q Consensus 395 ~~~~~~~G~~~W~ 407 (471)
.+.+.++++..
T Consensus 201 --~~~VeryawF~ 211 (239)
T PF11790_consen 201 --QPYVERYAWFG 211 (239)
T ss_pred --CCCeeEEEecc
Confidence 34355555555
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=97.57 E-value=0.034 Score=56.61 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=119.2
Q ss_pred EEEEeeccch-hhhcc-CCC-chhHHHHHHHHH--------HhCCCCEEEEeecc----C-------CCcc---ccCCCC
Q 012093 88 YVNGFNTYWL-MVFAA-DQS-TRGKVSELFHQA--------SSAGLTVCRTWAFN----D-------GQWR---ALQTSP 142 (471)
Q Consensus 88 ~~~G~N~~~~-~~~~~-~~~-~~~~~~~dl~~m--------k~~G~N~vR~~~~~----~-------~~~~---~~~~~~ 142 (471)
-=.|+...|. ...|. -+. .++++.+.|=.. +.+|+|.+|.-+-. . ..|+ .+.+..
T Consensus 16 eGfGaS~aW~a~~~Gk~w~~~~r~~iaDlLFS~~~~~~g~p~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~d 95 (384)
T PF14587_consen 16 EGFGASDAWWANFVGKNWPEEKRNQIADLLFSTENDSNGNPKGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPAD 95 (384)
T ss_dssp -EEEEE-TTTHHHHHHHS-HHHHHHHHHHHH---B-TTS-B-S---S-EEEE---STTTTTTSS--SSSTT----SB-TT
T ss_pred ccccHHHhHHHHHhcccCCHHHHHHHHHHhcCCCcccCCCCCCceeeeeeeccccCCcccccCccCCCcccCCccccCCC
Confidence 3357777765 44441 111 233343333222 57999999995531 0 0122 233445
Q ss_pred CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCC-CcCCCHHHHHHHHHHHHHHHhc
Q 012093 143 SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDD-EFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 143 g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~-~f~~~~~~~~~~~~~~~~lv~R 221 (471)
|.||-+.=..=..++.+|++||+..++-+.|. . |. |....|...+... .---.++..++|.+|+..++++
T Consensus 96 g~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNS--P----P~---~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~ 166 (384)
T PF14587_consen 96 GSYDWDADAGQRWFLKAAKERGVNIFEAFSNS--P----PW---WMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKH 166 (384)
T ss_dssp S-B-TTSSHHHHHHHHHHHHTT---EEEE-SS--S-----G---GGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHH
T ss_pred CCcCCCCCHHHHHHHHHHHHcCCCeEEEeecC--C----CH---HHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHH
Confidence 66653221222247899999999987765431 1 11 2222222111111 1111356789999999999999
Q ss_pred cccccccccCCCC-cEEEEEeecCCCCCCC---C-----ChhHHHHHHHHHHHHhhccCCCCEEEeccccc----cCCCC
Q 012093 222 VNTFTNLTYKNDP-TIFAWELMNEPRCTSD---P-----SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGF----YGPSA 288 (471)
Q Consensus 222 ~N~~tg~~yk~~p-~I~~wel~NEp~~~~~---~-----~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~----~~~~~ 288 (471)
|+.+- .|-..+.+|||...-. . ..+...+.++.+.+.+++...+..|+++.++- |....
T Consensus 167 --------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~ 238 (384)
T PF14587_consen 167 --------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDK 238 (384)
T ss_dssp --------HHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S
T ss_pred --------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccC
Confidence 65442 4666899999986521 1 13556778888999998888877788775432 22211
Q ss_pred --CCCc-----cCCCCcccccccchhhhhcCCCCc-eEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhc--CC
Q 012093 289 --PDRA-----KFNPNSYATQVGTDFIRNHQTLGV-DFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYL--RM 358 (471)
Q Consensus 289 --~~~~-----~~np~~~~~~~g~d~~~~~~~~~i-D~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~--~k 358 (471)
.+.. .++|. ...++. ..+++ .+++-|.|-..+ + ...+...++-+++ .+.+ . +.
T Consensus 239 ~~~~r~~~i~~ff~~~------s~~yi~--~l~~v~~~i~~HsYwt~~----~-~~~l~~~R~~~~~---~~~~-~~~~~ 301 (384)
T PF14587_consen 239 NDWGRGNQIEAFFNPD------SSTYIG--DLPNVPNIISGHSYWTDS----P-WDDLRDIRKQLAD---KLDK-YSPGL 301 (384)
T ss_dssp -TTS---HHHHHHSTT------STT--T--T-TTEEEEEEE--TT-SS----S-HHHHHHHHHHHHH---HHHT-TSS--
T ss_pred CchhhhhhHHhhcCCC------chhhhh--ccccchhheeecccccCC----C-HHHHHHHHHHHHH---HHHh-hCcCC
Confidence 0000 01121 111111 23454 478999995432 1 1222222222322 2233 4 78
Q ss_pred cEEEEecCCCCCCCC---CChHHHHHHHHHHH---HHHHHhhhcCCCccceeecccCCCCCCCCCCCce
Q 012093 359 PVLFTEFGVSAKDTG---YNTSFRDTLISSVY---KTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYA 421 (471)
Q Consensus 359 Pviv~EfG~~~~~~g---~s~~~r~~y~~~~~---~~i~~~~~~~~~~~G~~~W~~~~~g~~~~~dgf~ 421 (471)
.++.+||.+-.+..+ .....|+-.++..+ ..|..-+- -.+...|-+|.-... ..+.||+=
T Consensus 302 ~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~arviH~DL~-~anassW~wW~a~~~--~~ykdgli 367 (384)
T PF14587_consen 302 KYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVARVIHNDLT-YANASSWQWWTAISP--YDYKDGLI 367 (384)
T ss_dssp EEEE----S----TTT-SSS-HHHHHHH--HHHHHHHHHHHHH-TS--SEEEEEESEES--S--SSSSE
T ss_pred ceeeeeeeeccCCcccccCCCcccchhHHHHHHHHHHHHhhhh-hcccchhHHHHHhcc--ccccCceE
Confidence 899999988776421 11112443332111 11222121 123678888888754 23456663
No 41
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.018 Score=57.21 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=114.2
Q ss_pred hHHHHHHHH-HHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhh
Q 012093 108 GKVSELFHQ-ASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186 (471)
Q Consensus 108 ~~~~~dl~~-mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~ 186 (471)
..++..|.. .-++|+..+|+.+-++.-| +. |.+|.. .+.|- .-.-+..+|++|+.+. |....
T Consensus 65 a~l~t~Fgng~~~lg~si~Rv~I~~ndfs--l~---g~~d~w-~kels-~Ak~~in~g~ivfASP---WspPa------- 127 (433)
T COG5520 65 AQLETLFGNGANQLGFSILRVPIDSNDFS--LG---GSADNW-YKELS-TAKSAINPGMIVFASP---WSPPA------- 127 (433)
T ss_pred HHHHHHhcCCccccCceEEEEEecccccc--cC---CCcchh-hhhcc-cchhhcCCCcEEEecC---CCCch-------
Confidence 344444433 2368999999976432212 11 222211 11111 1122667899998875 33211
Q ss_pred hhhh----cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCCC--C---ChhHH
Q 012093 187 WGKA----AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSD--P---SGDTL 256 (471)
Q Consensus 187 W~~~----~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~-p~I~~wel~NEp~~~~~--~---~g~~~ 256 (471)
|.+. .|+. ... . -++....|.+++...|.. ++++ -.+-+.++.|||..... . ..+..
T Consensus 128 ~Mktt~~~ngg~---~g~-L-k~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~ 194 (433)
T COG5520 128 SMKTTNNRNGGN---AGR-L-KYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEE 194 (433)
T ss_pred hhhhccCcCCcc---ccc-c-chhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHH
Confidence 2111 1110 000 0 133445566666666665 6665 35788999999998632 1 22333
Q ss_pred HHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhH
Q 012093 257 QSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDA 336 (471)
Q Consensus 257 ~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~ 336 (471)
.+++ .++++.+..+.-|.+-..-.+ .|. +.- .-+.......++|++..|.|......-
T Consensus 195 ~rF~---~qyl~si~~~~rV~~pes~~~----------~~~-~~d---p~lnDp~a~a~~~ilg~H~Ygg~v~~~----- 252 (433)
T COG5520 195 LRFM---RQYLASINAEMRVIIPESFKD----------LPN-MSD---PILNDPKALANMDILGTHLYGGQVSDQ----- 252 (433)
T ss_pred HHHH---HHhhhhhccccEEecchhccc----------ccc-ccc---ccccCHhHhcccceeEeeecccccccc-----
Confidence 3343 344444444444443221111 121 100 001111245689999999997653210
Q ss_pred HHHHHHHHHHHHHHHHHH-hcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCC
Q 012093 337 HLQFTKSWMEAHIEDAEK-YLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFP 410 (471)
Q Consensus 337 ~~~~~~~~i~~~~~~a~~-~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~ 410 (471)
... .++. ..+|-++++|.-....+++.. .| +.+.. ...+....-+++ .+|..+|.+.-
T Consensus 253 --------p~~---lak~~~~gKdlwmte~y~~esd~~s~--dr-~~~~~-~~hi~~gm~~gg-~~ayv~W~i~~ 311 (433)
T COG5520 253 --------PYP---LAKQKPAGKDLWMTECYPPESDPNSA--DR-EALHV-ALHIHIGMTEGG-FQAYVWWNIRL 311 (433)
T ss_pred --------hhh---HhhCCCcCCceEEeecccCCCCCCcc--hH-HHHHH-HHHHHhhccccC-ccEEEEEEEee
Confidence 110 1111 148999999997666554322 23 22222 222333334454 89999998863
No 42
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.18 E-value=0.022 Score=57.19 Aligned_cols=208 Identities=17% Similarity=0.285 Sum_probs=110.6
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCC--cc-ccCCCC----CC-CChHHHHHHHHHHHHHHHcCCEEEEecC-C-Cc
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQ--WR-ALQTSP----SV-YDEEVFKALDFVISEAKKYKIRLILSLT-N-NW 175 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~--~~-~~~~~~----g~-~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~-~w 175 (471)
+++.+++.|+.++++|+|+|=+-+.+.+. |+ .+.|.. |. .....++-|..+|++|+++||.|..=+- . ..
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 57899999999999999988764433221 11 111111 11 1122477889999999999999975430 0 00
Q ss_pred CcCCC-hhhhhhhhh--hcCCCCCC----CCCcCC---CHHHHHHHHHHHHHHHhccccccccccCCC---CcEEEEEe-
Q 012093 176 DAYGG-KAQYVKWGK--AAGLNLTS----DDEFFS---HTTLKSYYKAHVKTVLNRVNTFTNLTYKND---PTIFAWEL- 241 (471)
Q Consensus 176 ~~~gG-~~~y~~W~~--~~G~~~~~----~~~f~~---~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~---p~I~~wel- 241 (471)
...+. ....+.|.. ..|..... ....|- +|+.++...+.++.+|++-. .-|+++-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 00000 011223421 11211100 122232 58899999999999999832 344443321 11111100
Q ss_pred ---------ecCCCCC-CC-----CChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccch
Q 012093 242 ---------MNEPRCT-SD-----PSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTD 306 (471)
Q Consensus 242 ---------~NEp~~~-~~-----~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d 306 (471)
+..|... .+ ...+.+..+++++.+.||+++|+..+++...|.++.+.... | .|
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y~~~-------~-----qD 243 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAYDDY-------Y-----QD 243 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhhhhe-------e-----cc
Confidence 0000000 00 00244566788999999999999999887655442211100 1 12
Q ss_pred hhhhcCCCCceEEEEeccCC
Q 012093 307 FIRNHQTLGVDFASVHIYAD 326 (471)
Q Consensus 307 ~~~~~~~~~iD~~s~H~Y~~ 326 (471)
+..=.....+|++..-.|..
T Consensus 244 ~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 244 WRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHhcCCccEEEeeeccc
Confidence 22212346799998888854
No 43
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=96.92 E-value=0.0035 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 012093 150 FKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 150 l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+++.|.+.+.|++-|++||..|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 45789999999999999999993
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=1.4e-05 Score=81.35 Aligned_cols=350 Identities=21% Similarity=0.307 Sum_probs=176.7
Q ss_pred CCCCcEEEeCCeEE-ECCEE------EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeecc--C--C---
Q 012093 68 DDWQMVQKQGNQFV-VNDQP------FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN--D--G--- 133 (471)
Q Consensus 68 ~~~gfv~v~g~~f~-~nGkp------~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~--~--~--- 133 (471)
++-+||.++..++. +||++ ....|.|. ..++.-++.++.+++.++|+.+-. + +
T Consensus 33 e~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~-------------~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw 99 (587)
T COG3934 33 EPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNV-------------WYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNW 99 (587)
T ss_pred ccccCccceeEEEEEecCcchhhhhceecccccH-------------HHHHHHhhhcccCcceEEEEEeecccccCccee
Confidence 56689999977765 99999 55555553 455556666777777777774421 0 0
Q ss_pred --CccccC-C----------CCC-CCChHHHH--HHHHHHHHHHHcCCEEE---EecCCCcCcCCChhhhhhhhhhc---
Q 012093 134 --QWRALQ-T----------SPS-VYDEEVFK--ALDFVISEAKKYKIRLI---LSLTNNWDAYGGKAQYVKWGKAA--- 191 (471)
Q Consensus 134 --~~~~~~-~----------~~g-~~~~~~l~--~lD~~l~~a~~~Gi~vi---l~l~~~w~~~gG~~~y~~W~~~~--- 191 (471)
.|..-| | .|+ .|.+..+. ++|-.|..-...+.-++ ....+.|...++|..|.+|..+.
T Consensus 100 ~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlv 179 (587)
T COG3934 100 RIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLV 179 (587)
T ss_pred EeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCee
Confidence 121000 1 011 23444444 44444444444555222 11223466678888888887541
Q ss_pred --CCCCC-------CCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCC-----hhHHH
Q 012093 192 --GLNLT-------SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS-----GDTLQ 257 (471)
Q Consensus 192 --G~~~~-------~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~-----g~~~~ 257 (471)
|.+.. ....++.|-..-..|..+...++.|+.+.+|.++.+.|++++|...|++......+ .+...
T Consensus 180 svGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayf 259 (587)
T COG3934 180 SVGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYF 259 (587)
T ss_pred ecCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhh
Confidence 22111 11123334344455556677778899999999999999999999999998765321 23455
Q ss_pred HHHHHHHH------HhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccC-
Q 012093 258 SWIQEMAV------YVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWIS- 330 (471)
Q Consensus 258 ~w~~~~~~------~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~- 330 (471)
.|++-+.. .|.-++--++.+.+.+.-| .|- + ...| .+.....+.+|+-++|..+..|..
T Consensus 260 iw~~lal~~ggdGaLiwclsdf~~gsdd~ey~w----------~p~-e-l~fg--iIradgpek~~a~~~~~fsn~~kdI 325 (587)
T COG3934 260 IWIRLALDTGGDGALIWCLSDFHLGSDDSEYTW----------GPM-E-LEFG--IIRADGPEKIDAMTLHIFSNNWKDI 325 (587)
T ss_pred hhhhhHHhhcCCceEEEEecCCccCCCCCCCcc----------ccc-c-ceee--eecCCCchhhhHHHHHHhcccccee
Confidence 56554111 1111111121111111111 110 0 0000 011111223344444544433311
Q ss_pred -CCCh-----hHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHhhhcCCCc
Q 012093 331 -QTIS-----DAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD----TGYNTSFRDTLISSVYKTLLNSTKKGGSG 400 (471)
Q Consensus 331 -~~~~-----~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~----~g~s~~~r~~y~~~~~~~i~~~~~~~~~~ 400 (471)
.+++ +...-....+.+++...+.+ ..+|+++-+++..... ++.....|+..++.+++.-...+.-.+.-
T Consensus 326 ~~~Sfq~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt 404 (587)
T COG3934 326 SMCSFQPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPT 404 (587)
T ss_pred eeecccCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcc
Confidence 1110 11111123356666666665 7999999999876653 23333344444444333221122223557
Q ss_pred cceeecccCCCCC---------------------CCCCCCceEEeCCCccHHHHHHHHHHHHHhccc
Q 012093 401 AGSLLWQLFPDGT---------------------DYMNDGYAIVLSKSPSTSNIISLHSTRIATFNS 446 (471)
Q Consensus 401 ~G~~~W~~~~~g~---------------------~~~~dgf~i~~~~~~~~~~~i~~~~~~~~~~~~ 446 (471)
+|...|.+...+. ..|..-|++.. -+.+..+.+++++...+.++.
T Consensus 405 ~g~Ttw~~llk~vvn~v~~v~Fs~p~ts~h~s~th~wq~lFGv~d-i~~~gs~g~~a~~~nVkllg~ 470 (587)
T COG3934 405 AGVTTWAWLLKGVVNQVPDVWFSKPDTSYHGSPTHEWQGLFGVFD-IDASGSAGIKAHAANVKLLGK 470 (587)
T ss_pred cchhHHHHHhhhhhccccceeecCCceeecCCCchhhHHhhCCCC-Cccccccccccchhhhccccc
Confidence 8888888853211 12222455433 234455667788888877773
No 45
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.77 E-value=0.096 Score=55.85 Aligned_cols=255 Identities=17% Similarity=0.173 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhCCCCEEEEeecc-CC---CccccCCCCC-----CCC--hHHHHHHHHHHHHHHHc--CCEEEEecCCCc
Q 012093 109 KVSELFHQASSAGLTVCRTWAFN-DG---QWRALQTSPS-----VYD--EEVFKALDFVISEAKKY--KIRLILSLTNNW 175 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~-~~---~~~~~~~~~g-----~~~--~~~l~~lD~~l~~a~~~--Gi~vil~l~~~w 175 (471)
.++..|. =..+|++.+|+.+.+ |. .|. +...++ .|+ .+..+.+--+|..|.+. +|+|+... |
T Consensus 102 ll~~~F~-~~G~g~s~~R~pIgssDfs~~~Yt-y~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp---W 176 (496)
T PF02055_consen 102 LLRSLFS-EDGIGYSLLRVPIGSSDFSTRPYT-YDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP---W 176 (496)
T ss_dssp HHHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---S
T ss_pred HHHHHhh-cCCceEEEEEeeccCcCCcCCccc-ccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---C
Confidence 3444454 356999999997743 21 111 111122 222 11111111344444433 48888875 4
Q ss_pred CcCCChhhhhhhhhhcCCCCCCCCCc--CCCHHHHHHHHHHHHHHHhccccccccccCCCC-cEEEEEeecCCCCCC---
Q 012093 176 DAYGGKAQYVKWGKAAGLNLTSDDEF--FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTS--- 249 (471)
Q Consensus 176 ~~~gG~~~y~~W~~~~G~~~~~~~~f--~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p-~I~~wel~NEp~~~~--- 249 (471)
.. | .|.+..+.-.+. ..+ -..+++.+.|.+|+.+.++. |+.+- .|.+..+.|||....
T Consensus 177 Sp----P---~WMKtn~~~~g~-g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~ 240 (496)
T PF02055_consen 177 SP----P---AWMKTNGSMNGG-GSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPN 240 (496)
T ss_dssp ----------GGGBTTSSSCSS--BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT
T ss_pred CC----C---HHHccCCcCcCC-CccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCC
Confidence 32 1 355443211100 001 11346788899999888888 88774 588889999998531
Q ss_pred --C----CChhHHHHHHHH-HHHHhhccCC--CCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEE
Q 012093 250 --D----PSGDTLQSWIQE-MAVYVKSIDA--KHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFAS 320 (471)
Q Consensus 250 --~----~~g~~~~~w~~~-~~~~Ir~~Dp--~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s 320 (471)
. .+++..++|++. +...+++..+ +.-|.+..+.... .|. |...- +....+...+|.++
T Consensus 241 ~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~-~~~~i---l~d~~A~~yv~GiA 307 (496)
T PF02055_consen 241 YPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPD-YADTI---LNDPEAAKYVDGIA 307 (496)
T ss_dssp -SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTH-HHHHH---HTSHHHHTTEEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cch-hhhhh---hcChhhHhheeEEE
Confidence 1 134667788875 7888888776 4444443322110 111 21000 00011346799999
Q ss_pred EeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCC----CChHHHHHHHHHHHHHHHHhhhc
Q 012093 321 VHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG----YNTSFRDTLISSVYKTLLNSTKK 396 (471)
Q Consensus 321 ~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g----~s~~~r~~y~~~~~~~i~~~~~~ 396 (471)
+|.|.+.-. .. -+.+ ..++..+|.++.+|-.......+ ...=.|.+.+ ...+...+..
T Consensus 308 ~HwY~g~~~-----~~-------~l~~---~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y---~~~ii~~lnn 369 (496)
T PF02055_consen 308 FHWYGGDPS-----PQ-------ALDQ---VHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERY---AHDIIGDLNN 369 (496)
T ss_dssp EEETTCS-H-----CH-------HHHH---HHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHH---HHHHHHHHHT
T ss_pred EECCCCCch-----hh-------HHHH---HHHHCCCcEEEeeccccCCCCcccccccccHHHHHHH---HHHHHHHHHh
Confidence 999976310 00 1111 11223789999999855432211 1111232211 2223444443
Q ss_pred CCCccceeecccC--CCCCCCCC
Q 012093 397 GGSGAGSLLWQLF--PDGTDYMN 417 (471)
Q Consensus 397 ~~~~~G~~~W~~~--~~g~~~~~ 417 (471)
. ..||+.|.+. .+|-+.|.
T Consensus 370 -~-~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 370 -W-VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp -T-EEEEEEEESEBETTS---TT
T ss_pred -h-ceeeeeeeeecCCCCCCccc
Confidence 3 7899999985 23435553
No 46
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.40 E-value=0.93 Score=45.42 Aligned_cols=204 Identities=14% Similarity=0.173 Sum_probs=104.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCC---ccc---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQ---WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 179 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~---~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 179 (471)
+.+.+++.|+.+++.|+|+|=+=+-.+.+ ++. .....|.. ......+..+++.++++|||+|--+..+-+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 46789999999999999999885432221 110 10111221 112356778999999999999976542211100
Q ss_pred Chhhhhhhhhh--cCCCC-CCCCCcCCC---HHHHHHHHHHHHHHHhcccccccccc--CCCCcEEEEEeecCCCCCCCC
Q 012093 180 GKAQYVKWGKA--AGLNL-TSDDEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTY--KNDPTIFAWELMNEPRCTSDP 251 (471)
Q Consensus 180 G~~~y~~W~~~--~G~~~-~~~~~f~~~---~~~~~~~~~~~~~lv~R~N~~tg~~y--k~~p~I~~wel~NEp~~~~~~ 251 (471)
. ...++|+-. .|... .....-|.| ++.++...+..+++++. -+-.+.+ =--|.- ...+........
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIqfDYIRFP~~---~~~~~l~y~~~~ 163 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQFDYIRFPDE---GRLSGLDYSEND 163 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEeeeeecCCC---CcccccccCCCC
Confidence 0 001223221 11111 011122444 45666666777777654 1111111 011220 000001110000
Q ss_pred ----ChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCC
Q 012093 252 ----SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADS 327 (471)
Q Consensus 252 ----~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~ 327 (471)
.-+.+..+++.+.+.++..+ .+|++..-|.-.... +. ..-|+++.. ..+.+|+++.=.||.+
T Consensus 164 ~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~~------~~----~~iGQ~~~~--~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 164 TEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWSP------DD----MGIGQDFEK--IAEYVDYISPMIYPSH 229 (316)
T ss_pred CcchHHHHHHHHHHHHHHHHhHcC--CCEEEEecccccccC------CC----CCcCCCHHH--HhhhCCEEEecccccc
Confidence 12567788888888887764 566664333211100 00 013566655 3678999999999998
Q ss_pred ccC
Q 012093 328 WIS 330 (471)
Q Consensus 328 w~~ 330 (471)
|..
T Consensus 230 ~~~ 232 (316)
T PF13200_consen 230 YGP 232 (316)
T ss_pred cCc
Confidence 865
No 47
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.26 Score=50.81 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=100.4
Q ss_pred chhHHHHH-HHHHHhCCCCEEEEeecc--CC-Ccc----ccCCCCCC------CChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 106 TRGKVSEL-FHQASSAGLTVCRTWAFN--DG-QWR----ALQTSPSV------YDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 106 ~~~~~~~d-l~~mk~~G~N~vR~~~~~--~~-~~~----~~~~~~g~------~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
+..-+++| ++.+|++.+-++|....+ ++ .|. +.+..|-. ..|..-=...+++++|++.|.-+++.+
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~av 125 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAV 125 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEE
Confidence 44556666 789999999999985421 11 232 12222322 223333356788999999999999987
Q ss_pred CCCcCcCCChhhhhhhhhh---cCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC
Q 012093 172 TNNWDAYGGKAQYVKWGKA---AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 248 (471)
Q Consensus 172 ~~~w~~~gG~~~y~~W~~~---~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~ 248 (471)
.- -++|.+...+|..- +|+ ..+. .+|+-- | ++.--.|-.|.|+||....
T Consensus 126 N~---Gsrgvd~ar~~vEY~n~pgg------tyws----------dlR~~~-------G--~~~P~nvK~w~lGNEm~Gp 177 (501)
T COG3534 126 NL---GSRGVDEARNWVEYCNHPGG------TYWS----------DLRREN-------G--REEPWNVKYWGLGNEMDGP 177 (501)
T ss_pred ec---CCccHHHHHHHHHHccCCCC------ChhH----------HHHHhc-------C--CCCCcccceEEeccccCCC
Confidence 32 23555544455431 221 1121 122111 1 2222368889999999543
Q ss_pred CCC---ChhHHHHHHHHHHHHhhccCCCC-EEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEecc
Q 012093 249 SDP---SGDTLQSWIQEMAVYVKSIDAKH-LVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIY 324 (471)
Q Consensus 249 ~~~---~g~~~~~w~~~~~~~Ir~~Dp~~-lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y 324 (471)
-.. ..+.+..++.+..++.|=.||+- .|.+|..+- ..+. .|. |+ +-....+...+|++++|+|
T Consensus 178 Wq~G~~~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~---~n~~----~~~-W~-----~~vl~~~~e~vD~ISlH~Y 244 (501)
T COG3534 178 WQCGHKTAPEYGRLANEYRKYMKYFDPTIENVVCGSANG---ANPT----DPN-WE-----AVVLEEAYERVDYISLHYY 244 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHhhcCccccceEEeecCC---CCCC----chH-HH-----HHHHHHHhhhcCeEEEEEe
Confidence 211 23455567788888888889964 444443221 1110 121 42 2222335677999999999
Q ss_pred CC
Q 012093 325 AD 326 (471)
Q Consensus 325 ~~ 326 (471)
-.
T Consensus 245 ~G 246 (501)
T COG3534 245 KG 246 (501)
T ss_pred cC
Confidence 43
No 48
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=95.10 E-value=1 Score=44.97 Aligned_cols=154 Identities=12% Similarity=0.067 Sum_probs=91.0
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccC-CCc---cccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCC
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFND-GQW---RALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 179 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~-~~~---~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 179 (471)
+.+.+.+.+-++.|+.+|+|.+-++. .| .++ +.+....|.|..+.+ .++++.|+++||.||.++- ..|
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl-~D~f~~~~~p~~~~~~~~yT~~ei---~ei~~yA~~~gI~vIPeid----~pG 84 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYY-EDTFPYEGEPEVGRMRGAYTKEEI---REIDDYAAELGIEVIPLIQ----TLG 84 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEE-ecceecCCCcccccCCCCcCHHHH---HHHHHHHHHcCCEEEecCC----CHH
Confidence 45678999999999999999999843 22 111 222223567876555 4566999999999999973 223
Q ss_pred ChhhhhhhhhhcCC---CCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCC-------
Q 012093 180 GKAQYVKWGKAAGL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTS------- 249 (471)
Q Consensus 180 G~~~y~~W~~~~G~---~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~------- 249 (471)
.+....+|...... +.....-...+|+..+..++.+++++.- +. .+.|- -=+-|.....
T Consensus 85 H~~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~-s~~~H--IG~DE~~~~g~~~~~~~ 153 (301)
T cd06565 85 HLEFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HP-SKYIH--IGMDEAYDLGRGRSLRK 153 (301)
T ss_pred HHHHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CC-CCeEE--ECCCcccccCCCHHHHH
Confidence 22221211100000 0001122356788888889999998886 43 22221 1112222110
Q ss_pred ---CCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 250 ---DPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 250 ---~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
....+.+..+++++.+.+|+..+ +++.
T Consensus 154 ~~~~~~~~l~~~~~~~v~~~v~~~g~-~~~~ 183 (301)
T cd06565 154 HGNLGRGELYLEHLKKVLKIIKKRGP-KPMM 183 (301)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 01135678899999999999887 4444
No 49
>PRK10785 maltodextrin glucosidase; Provisional
Probab=95.03 E-value=0.38 Score=52.74 Aligned_cols=67 Identities=18% Similarity=0.079 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHhCCCCEEEEee-ccCCCccccCCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWA-FNDGQWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~-~~~~~~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+..-+.+-|+.++++|+|+|=+.. |.....+.+.+.. -..|+ ...+.|.+++++|+++||+||+++.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 567888999999999999998843 3211111111100 00111 1245678899999999999999984
No 50
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.58 E-value=0.82 Score=50.33 Aligned_cols=182 Identities=9% Similarity=0.104 Sum_probs=92.2
Q ss_pred eeccchhhhcc-CCCchhHHHHH-HHHHHhCCCCEEEEee-ccC---CCcc--c---cCCCCCCCChHHHHHHHHHHHHH
Q 012093 92 FNTYWLMVFAA-DQSTRGKVSEL-FHQASSAGLTVCRTWA-FND---GQWR--A---LQTSPSVYDEEVFKALDFVISEA 160 (471)
Q Consensus 92 ~N~~~~~~~~~-~~~~~~~~~~d-l~~mk~~G~N~vR~~~-~~~---~~~~--~---~~~~~g~~~~~~l~~lD~~l~~a 160 (471)
++.|++..... ...+-..+.+. ++.++++|+|+|=+.. +.. ..|. . +.+.+ .|. ..+.|.++|++|
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~-~~G--t~~dlk~lV~~~ 215 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTS-RFG--TPDDFMYFVDAC 215 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccc-ccC--CHHHHHHHHHHH
Confidence 45555533221 12344555555 4999999999999843 211 1121 0 11111 221 135677899999
Q ss_pred HHcCCEEEEecC-CCcCc-------CCChhhhhhhhhhcCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 012093 161 KKYKIRLILSLT-NNWDA-------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 230 (471)
Q Consensus 161 ~~~Gi~vil~l~-~~w~~-------~gG~~~y~~W~~~~G~--~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~y 230 (471)
+++||+||+++. |+... +.|.+.|..-....+. ..+...--+.+|++++.+.+.++..++.. .+-|.++
T Consensus 216 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey-~iDG~R~ 294 (613)
T TIGR01515 216 HQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY-HIDGLRV 294 (613)
T ss_pred HHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCcEEEE
Confidence 999999999974 22110 0111101000000000 00001112357899999999999988751 1122222
Q ss_pred CCCCcEEEEEeecCCCCCCC-----CChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 231 KNDPTIFAWELMNEPRCTSD-----PSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 231 k~~p~I~~wel~NEp~~~~~-----~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
---++++.+.-++++..... ........+++++.+.||+..|+.++.
T Consensus 295 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 346 (613)
T TIGR01515 295 DAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTI 346 (613)
T ss_pred cCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 11124444444444431110 001234568899999999999986544
No 51
>PLN02705 beta-amylase
Probab=94.32 E-value=0.56 Score=50.16 Aligned_cols=130 Identities=15% Similarity=0.335 Sum_probs=81.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~-- 182 (471)
+++.++..|+.+|.+|+.-|=+-+. |..++. .|+.|| |..+.++++++++.||+|.+.|.- ...||.-
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSF--HqCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCW----WGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAF--HEYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--eccCCCCCC
Confidence 4688999999999999999988432 555554 578898 788889999999999998666531 1233320
Q ss_pred ----hhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 183 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 183 ----~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
..+.|....|.. ..+-||+|.. | .+|...| .|..-++|-..+...-+.+.+
T Consensus 337 ~~~IPLP~WV~e~g~~--nPDifftDr~--------------------G--~rn~EyL-Slg~D~~pvl~GRTplq~Y~D 391 (681)
T PLN02705 337 NVMISLPQWVLEIGKD--NQDIFFTDRE--------------------G--RRNTECL-SWSIDKERVLKGRTGIEVYFD 391 (681)
T ss_pred cccccCCHHHHHhccc--CCCceeecCC--------------------C--Cccccee-eeecCcccccCCCCHHHHHHH
Confidence 134565543321 1234666532 1 2334454 599999997654322345556
Q ss_pred HHHHHHHHhhc
Q 012093 259 WIQEMAVYVKS 269 (471)
Q Consensus 259 w~~~~~~~Ir~ 269 (471)
|++......+.
T Consensus 392 FM~SFr~~F~~ 402 (681)
T PLN02705 392 FMRSFRSEFDD 402 (681)
T ss_pred HHHHHHHHHHH
Confidence 66544444444
No 52
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.23 E-value=3 Score=42.11 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=87.8
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccC--------------------CCCCCCChHHHHHHHHH
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ--------------------TSPSVYDEEVFKALDFV 156 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~--------------------~~~g~~~~~~l~~lD~~ 156 (471)
+.+.+.+.+-++.|+..++|++-+ |+.| .|+ .+. ...|.|.. +.+.++
T Consensus 13 ~~~~~~ik~~id~ma~~K~N~lhl-HltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 87 (326)
T cd06564 13 YYSMDFLKDIIKTMSWYKMNDLQL-HLND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEFKEL 87 (326)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEE-eecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHHHHH
Confidence 345789999999999999999987 4444 232 000 11234554 455678
Q ss_pred HHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCC-----CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccC
Q 012093 157 ISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN-----LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYK 231 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~-----~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk 231 (471)
++.|+++||.||.++. ..|.+.....+....+.. .....-..++|+..+..++.+++++.- +.
T Consensus 88 v~yA~~rgI~vIPEID----~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~ 155 (326)
T cd06564 88 IAYAKDRGVNIIPEID----SPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FN 155 (326)
T ss_pred HHHHHHcCCeEeccCC----CcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cC
Confidence 8999999999999973 222221111111000110 001112346788899899999999987 44
Q ss_pred C-CCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccC
Q 012093 232 N-DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSID 271 (471)
Q Consensus 232 ~-~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~D 271 (471)
. .+.|. -=+-|..... ...+.+..+++++.+.|++.+
T Consensus 156 ~~~~~~H--iGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~g 193 (326)
T cd06564 156 PKSDTVH--IGADEYAGDA-GYAEAFRAYVNDLAKYVKDKG 193 (326)
T ss_pred CCCCEEE--eccccccccC-ccHHHHHHHHHHHHHHHHHcC
Confidence 2 23221 1122322211 123567889999999999874
No 53
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.09 E-value=1.3 Score=48.09 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=87.3
Q ss_pred EEeeccchhhhcc-CCCchhHHHHHHHHHHhCCCCEEEEeeccC----CCcc--c---cCCCCCCCChHHHHHHHHHHHH
Q 012093 90 NGFNTYWLMVFAA-DQSTRGKVSELFHQASSAGLTVCRTWAFND----GQWR--A---LQTSPSVYDEEVFKALDFVISE 159 (471)
Q Consensus 90 ~G~N~~~~~~~~~-~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~----~~~~--~---~~~~~g~~~~~~l~~lD~~l~~ 159 (471)
..+..|++..... ...+-..+.+.|+.++++|+|+|=+....+ ..|. . +.+.+ .|. ..+.|.++|+.
T Consensus 92 ~~~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~-~~G--~~~e~k~lV~~ 168 (542)
T TIGR02402 92 EEAVIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN-AYG--GPDDLKALVDA 168 (542)
T ss_pred cccEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc-ccC--CHHHHHHHHHH
Confidence 4556666543221 234567777889999999999999843211 1121 1 11111 221 24567889999
Q ss_pred HHHcCCEEEEecC-CCcCcCCC-hhhhhhhhhhc-CCCCCCCCCcCCCH---HHHHHHHHHHHHHHhccccccccccCCC
Q 012093 160 AKKYKIRLILSLT-NNWDAYGG-KAQYVKWGKAA-GLNLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKND 233 (471)
Q Consensus 160 a~~~Gi~vil~l~-~~w~~~gG-~~~y~~W~~~~-G~~~~~~~~f~~~~---~~~~~~~~~~~~lv~R~N~~tg~~yk~~ 233 (471)
|+++||+||+++. |+-...+. .+.+..|.... ....+. .--+.+| .+++.+.+.++.-++. |+
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~-- 237 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLRE--------YH-- 237 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHH--------hC--
Confidence 9999999999974 32111110 01111111100 000000 1113456 7888888878777765 43
Q ss_pred CcEEEEEe--ecCCCCCCCCChhHHHHHHHHHHHHhhccCCC
Q 012093 234 PTIFAWEL--MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 273 (471)
Q Consensus 234 p~I~~wel--~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~ 273 (471)
|-+|=+ ...... .....+++++.+.+|++.|+
T Consensus 238 --iDGfR~D~~~~~~~------~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 238 --FDGLRLDAVHAIAD------TSAKHILEELAREVHELAAE 271 (542)
T ss_pred --CcEEEEeCHHHhcc------ccHHHHHHHHHHHHHHHCCC
Confidence 333333 222111 01245778899999999887
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.07 E-value=0.36 Score=42.04 Aligned_cols=105 Identities=12% Similarity=0.229 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCc---c-ccC-CCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQW---R-ALQ-TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~---~-~~~-~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
++.++.+|+.|+|+|-+..-..+.| | .+. ..|+ .. .+.|-+++++|++.||+|++-+.-.|...- ...++
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~-L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~~-~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG-LK---RDLLGEQVEACHERGIRVPAYFDFSWDEDA-AERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC-CC---cCHHHHHHHHHHHCCCEEEEEEeeecChHH-HHhCC
Confidence 4667889999999999944211112 1 111 1221 22 356778899999999999988754343311 12345
Q ss_pred hhhhh--cCCCCC--------CCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 186 KWGKA--AGLNLT--------SDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 186 ~W~~~--~G~~~~--------~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
+|... .|.+.. -....+++ .+++.....++++++|
T Consensus 78 eW~~~~~~G~~~~~~~~~~~~~~~~c~ns-~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERFGYPGWYTCCLNS-PYREFLLEQIREILDR 122 (132)
T ss_pred ceeeECCCCCCcCCCCcCCCCceecCCCc-cHHHHHHHHHHHHHHc
Confidence 67442 233110 01123333 5678889999999999
No 55
>smart00642 Aamy Alpha-amylase domain.
Probab=93.97 E-value=0.18 Score=45.74 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeec-cCC----CccccCCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAF-NDG----QWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~-~~~----~~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+-+.+.+.|+.++++|+|+|-+... ... .+..+.+.. -..++ ...+.|..+++.|+++||+||+++.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34677888899999999999998542 111 111111100 00111 1246788999999999999999985
No 56
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=93.95 E-value=3 Score=41.68 Aligned_cols=153 Identities=15% Similarity=0.133 Sum_probs=89.1
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCc-------cccC---------CCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQW-------RALQ---------TSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~-------~~~~---------~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
..+.+.+.+.++.|+..++|++-++.-.+..| |.+. +..|.|..+. +.++++.|+++||.|
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~v 88 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEV 88 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEE
Confidence 34678999999999999999999854333334 2221 1124566544 457789999999999
Q ss_pred EEecCCCcCcCCChhhhhhhhhhc------CCCCC--CCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 012093 168 ILSLTNNWDAYGGKAQYVKWGKAA------GLNLT--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 239 (471)
Q Consensus 168 il~l~~~w~~~gG~~~y~~W~~~~------G~~~~--~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~w 239 (471)
|.++. ..|.+.....+.... +.... ...-..++|+..+..++.+++++.- +. .+.|.
T Consensus 89 iPEiD----~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~iH-- 153 (303)
T cd02742 89 IPEID----MPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRYLH-- 153 (303)
T ss_pred EEecc----chHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCeEE--
Confidence 99973 122221111110000 00000 1112345788888888999998886 42 23221
Q ss_pred EeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 240 ELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 240 el~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
-=+-|..... ...+.+..+++++.+.+++.. ..++
T Consensus 154 iGgDE~~~~~-~~~~l~~~f~~~~~~~v~~~g-~~~~ 188 (303)
T cd02742 154 IGGDEAHFKQ-DRKHLMSQFIQRVLDIVKKKG-KKVI 188 (303)
T ss_pred ecceecCCCC-CHHHHHHHHHHHHHHHHHHcC-CeEE
Confidence 1133333211 113456778899999999876 3344
No 57
>PLN02161 beta-amylase
Probab=93.94 E-value=0.72 Score=48.45 Aligned_cols=128 Identities=9% Similarity=0.179 Sum_probs=79.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh---
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK--- 181 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~--- 181 (471)
+.+.++..|+.+|.+|+.-|=+-+. |..+|. .|+.|| |..+.++++++++.||++.+.+.-| ..||.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNvGd 185 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVW----WGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFH--SNMHLFGG 185 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4678999999999999999988432 555554 678898 7888899999999999987665311 12221
Q ss_pred h---hhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 182 A---QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 182 ~---~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
+ ..+.|....|.. ..+-||+|.. | .+|... +.|.+-|+|-......-+.+.+
T Consensus 186 ~~~IpLP~WV~~~g~~--~pDi~ftDr~--------------------G--~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 240 (531)
T PLN02161 186 KGGISLPLWIREIGDV--NKDIYYRDKN--------------------G--FSNNDY-LTLGVDQLPLFGGRTAVQCYED 240 (531)
T ss_pred ccCccCCHHHHhhhcc--CCCceEEcCC--------------------C--Ccccce-eeeecccchhcCCCCHHHHHHH
Confidence 0 134565543321 1234666532 1 233334 4688899998754322244555
Q ss_pred HHHHHHHHh
Q 012093 259 WIQEMAVYV 267 (471)
Q Consensus 259 w~~~~~~~I 267 (471)
+++......
T Consensus 241 fm~SFr~~F 249 (531)
T PLN02161 241 FMLSFSTKF 249 (531)
T ss_pred HHHHHHHHH
Confidence 554433333
No 58
>PRK12313 glycogen branching enzyme; Provisional
Probab=93.85 E-value=2.2 Score=47.27 Aligned_cols=165 Identities=11% Similarity=0.161 Sum_probs=82.0
Q ss_pred chhHHHHH-HHHHHhCCCCEEEEeec---cC-CCcc-----ccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CC
Q 012093 106 TRGKVSEL-FHQASSAGLTVCRTWAF---ND-GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NN 174 (471)
Q Consensus 106 ~~~~~~~d-l~~mk~~G~N~vR~~~~---~~-~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~ 174 (471)
+-..+.+. |+.++++|+|+|=+... +. ..|. .+.+.+ .|. ..+.|.++|+.|+++||+||+++. |+
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH 244 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGH 244 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 33444444 69999999999988432 11 1121 011111 121 145678899999999999999974 32
Q ss_pred cCc-------CCChhhhhhhhhh-cCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe---
Q 012093 175 WDA-------YGGKAQYVKWGKA-AGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--- 241 (471)
Q Consensus 175 w~~-------~gG~~~y~~W~~~-~G~~--~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel--- 241 (471)
... +.|.+.|. +... .+.. .....--+.+|++++.+.+.++..++.. .+-|.++---++++..+-
T Consensus 245 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~-~iDG~R~D~~~~~~~~d~~~~ 322 (633)
T PRK12313 245 FPKDDDGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY-HLDGLRVDAVSNMLYLDYDEE 322 (633)
T ss_pred CCCCcccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcChhhhhhcccccc
Confidence 211 01100000 0000 0000 0001112457899998888888888750 011211110011111110
Q ss_pred ----ecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 242 ----MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 242 ----~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
.|+.... . ......+++++.+.||+..|+. +++|
T Consensus 323 ~~~~~~~~~~~--~-~~~~~~fl~~~~~~v~~~~p~~-~lia 360 (633)
T PRK12313 323 GEWTPNKYGGR--E-NLEAIYFLQKLNEVVYLEHPDV-LMIA 360 (633)
T ss_pred cCcCCcccCCC--C-CcHHHHHHHHHHHHHHHHCCCe-EEEE
Confidence 1111110 0 0124567899999999999985 4454
No 59
>PLN02905 beta-amylase
Probab=93.78 E-value=0.72 Score=49.53 Aligned_cols=130 Identities=13% Similarity=0.325 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~-- 182 (471)
+.+.+++.|+.+|.+|+.-|=+-+. |..++. .|+.|| |..+.++++++++.||++.+.+.- ...||.-
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVW----WGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSF--HqCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCW----WGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSF--HECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999988332 555554 578898 788889999999999998766531 1234320
Q ss_pred ----hhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 183 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 183 ----~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
..+.|....|.. ..+-||+|.. | .+|...| .|..-|+|-..+...-+.+.+
T Consensus 355 ~~~IPLP~WV~e~g~~--nPDifftDrs--------------------G--~rn~EyL-Slg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGRS--NPDIFFTDRE--------------------G--RRNPECL-SWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhhc--CCCceEecCC--------------------C--CccCcee-eeecccccccCCCCHHHHHHH
Confidence 134465433210 1234666532 1 2344455 499999997754332345555
Q ss_pred HHHHHHHHhhc
Q 012093 259 WIQEMAVYVKS 269 (471)
Q Consensus 259 w~~~~~~~Ir~ 269 (471)
|++........
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 60
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=93.78 E-value=1.2 Score=45.47 Aligned_cols=246 Identities=15% Similarity=0.216 Sum_probs=125.6
Q ss_pred HHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCC
Q 012093 116 QASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNL 195 (471)
Q Consensus 116 ~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~ 195 (471)
.-++.|+|-||-+.. |+..... -.|+ +.++|++++..-.+|+-.|.... .|....-..+ .|-.
T Consensus 13 ~~~Ei~v~yi~~~~v----~h~~~q~-~~~~---~t~~d~i~d~~~~~~~~~ie~~l-~~~~l~~~~~--~wq~------ 75 (428)
T COG3664 13 TDDEIQVNYIRRHGV----WHVNAQK-LFYP---FTYIDEIIDTLLDLGLDLIELFL-IWNNLNTKEH--QWQL------ 75 (428)
T ss_pred hhhhhceeeehhcce----eeeeecc-ccCC---hHHHHHHHHHHHHhccHHHHHhh-cccchhhhhh--hccc------
Confidence 445789999987432 3211111 1444 56778888888888844433321 2332211111 1311
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCC-CCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCC
Q 012093 196 TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN-DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 274 (471)
Q Consensus 196 ~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~-~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~ 274 (471)
+......++++++.++.+++.| ++- .-+...+...|||+...+ ...+.+-+. ...|+++|.-
T Consensus 76 ----n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad--~~eyfk~y~---~~a~~~~p~i 138 (428)
T COG3664 76 ----NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD--KQEYFKLYD---ATARQRAPSI 138 (428)
T ss_pred ----ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc--hHHHHHHHH---hhhhccCcce
Confidence 1122234889999999999999 442 235666889999998632 122322222 2334666664
Q ss_pred EEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCcc---CCCC--hh-----HHHHHHHHH
Q 012093 275 LVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWI---SQTI--SD-----AHLQFTKSW 344 (471)
Q Consensus 275 lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~---~~~~--~~-----~~~~~~~~~ 344 (471)
.| |. .| ||. .-..|.+ ..+.+|+++.|.|...-. .... ++ ..++.. ..
T Consensus 139 ~v--g~-~w-----------~~e-----~l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~-r~ 196 (428)
T COG3664 139 QV--GG-SW-----------NTE-----RLHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDL-RG 196 (428)
T ss_pred ee--cc-cc-----------CcH-----HHhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhHH-HH
Confidence 43 32 11 221 0111222 467899999999953211 1100 00 011111 12
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCC--CCChHHHHHHHHHHHHHHHHhhhcCCCccceeecccCCC----CCCC--C
Q 012093 345 MEAHIEDAEKYLRMPVLFTEFGVSAKDT--GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD----GTDY--M 416 (471)
Q Consensus 345 i~~~~~~a~~~~~kPviv~EfG~~~~~~--g~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~~~----g~~~--~ 416 (471)
+++.++. .. .|+|+++.||....... -+++-.|+.|+-. .+.+ .++...+.-+|.+.+- |.++ .
T Consensus 197 ~~d~i~~-~~-~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~---~Lr~---~g~~v~a~~yW~~sdl~e~~g~~~~~~ 268 (428)
T COG3664 197 LKDLIQH-HS-LGLPLLLTNWNTLTGPREPTNGSYVRAAYIMR---LLRE---AGSPVDAFGYWTNSDLHEEHGPPEAPF 268 (428)
T ss_pred HHHHHHh-cc-CCCcceeecccccCCCccccCceeehHHHHHH---HHHh---cCChhhhhhhhhcccccccCCCccccc
Confidence 2222222 12 58999999998776531 1233345555322 2222 2456778889998763 2221 2
Q ss_pred CCCceEEeC
Q 012093 417 NDGYAIVLS 425 (471)
Q Consensus 417 ~dgf~i~~~ 425 (471)
-+||++...
T Consensus 269 ~~gfel~~~ 277 (428)
T COG3664 269 VGGFELFAP 277 (428)
T ss_pred ccceeeecc
Confidence 247776654
No 61
>PLN02803 beta-amylase
Probab=93.48 E-value=0.79 Score=48.44 Aligned_cols=129 Identities=12% Similarity=0.219 Sum_probs=79.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~-- 182 (471)
+++.++..|+.+|.+|+.-|=+-+. |..+|. .|+.|| |..+.++++++++.||+|...+.- ...||.-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSF--HqCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAW----WGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSF--HQCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4688999999999999999988332 555554 578898 788889999999999999766531 1234320
Q ss_pred ----hhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 183 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 183 ----~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
..+.|....|.. ..+-||+|.. | .+|... +.+.+-|+|-..+...-+.+.+
T Consensus 176 ~~~IpLP~WV~e~~~~--~pDi~ftDr~--------------------G--~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 230 (548)
T PLN02803 176 SCSIPLPPWVLEEMSK--NPDLVYTDRS--------------------G--RRNPEY-ISLGCDSLPVLRGRTPIQVYSD 230 (548)
T ss_pred cccccCCHHHHHhhhc--CCCceEecCC--------------------C--Ccccce-eccccccchhccCCCHHHHHHH
Confidence 134465432211 1234566532 1 223333 4688889988754322244555
Q ss_pred HHHHHHHHhh
Q 012093 259 WIQEMAVYVK 268 (471)
Q Consensus 259 w~~~~~~~Ir 268 (471)
+++......+
T Consensus 231 fm~SFr~~F~ 240 (548)
T PLN02803 231 YMRSFRERFK 240 (548)
T ss_pred HHHHHHHHHH
Confidence 5554433333
No 62
>PRK05402 glycogen branching enzyme; Provisional
Probab=93.38 E-value=2.7 Score=47.31 Aligned_cols=167 Identities=11% Similarity=0.212 Sum_probs=81.7
Q ss_pred chhHHHHH-HHHHHhCCCCEEEEeeccC----CCcc--c---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CC
Q 012093 106 TRGKVSEL-FHQASSAGLTVCRTWAFND----GQWR--A---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NN 174 (471)
Q Consensus 106 ~~~~~~~d-l~~mk~~G~N~vR~~~~~~----~~~~--~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~ 174 (471)
+-..+.+. |+.++++|+|+|=+....+ ..|. . +.+.+ .|- ..+.|.++|+.|+++||+||+++. |+
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 33445555 5999999999998843211 1121 0 11111 121 145677899999999999999974 32
Q ss_pred cCc-------CCChhhhhhhhhh-cCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecC
Q 012093 175 WDA-------YGGKAQYVKWGKA-AGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNE 244 (471)
Q Consensus 175 w~~-------~gG~~~y~~W~~~-~G~--~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NE 244 (471)
... +.|.+.|.. ... .|. ......-=+.+|++++.+.+.++..++.. .+-|.++---..++.++-...
T Consensus 340 ~~~~~~~~~~~~~~~~y~~-~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~-~iDG~R~D~v~~~~~~~~~~~ 417 (726)
T PRK05402 340 FPKDAHGLARFDGTALYEH-ADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF-HIDGLRVDAVASMLYLDYSRK 417 (726)
T ss_pred CCCCccchhccCCCcceec-cCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh-CCcEEEECCHHHhhhcccccc
Confidence 211 111111100 000 000 00000112457899998888888888750 011111110011111111110
Q ss_pred -----CCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 245 -----PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 245 -----p~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
|+............+++++.+.||+..|+.++.
T Consensus 418 ~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~li 455 (726)
T PRK05402 418 EGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTI 455 (726)
T ss_pred ccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 110000011234567899999999999986543
No 63
>PLN02801 beta-amylase
Probab=93.33 E-value=0.87 Score=47.87 Aligned_cols=126 Identities=14% Similarity=0.293 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~-- 182 (471)
+++.+++.|+.+|++|+.-|=+-+. |..++. .|+.|| |..+.++++++++.||++.+.+.- ...||.-
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVW----WGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSF--HqCGGNVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVW----WGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSF--HQCGGNVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999988432 555554 578898 788889999999999999665531 1233320
Q ss_pred ----hhhhhhhhcCCCCC----------C----------CCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEE
Q 012093 183 ----QYVKWGKAAGLNLT----------S----------DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFA 238 (471)
Q Consensus 183 ----~y~~W~~~~G~~~~----------~----------~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~ 238 (471)
..+.|....|..-+ . ....+......+.|.++++.+-..... |.+...|..
T Consensus 106 ~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~-----~l~~~~I~e 180 (517)
T PLN02801 106 AVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD-----FLEAGVIID 180 (517)
T ss_pred cccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH-----hccCCeeEE
Confidence 13457654322100 0 001222333567888888887776222 222346776
Q ss_pred EEeecCC
Q 012093 239 WELMNEP 245 (471)
Q Consensus 239 wel~NEp 245 (471)
.+++=-|
T Consensus 181 I~VGlGP 187 (517)
T PLN02801 181 IEVGLGP 187 (517)
T ss_pred EEEcccc
Confidence 7765444
No 64
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=93.05 E-value=6.6 Score=39.73 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=88.4
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccCC----------CCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT----------SPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~~----------~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..+.+.+.+.++.|+..++|++-++.-.+..|+ .+.. ..|.|.. +.+.++++.|+++||.
T Consensus 14 f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~ 90 (329)
T cd06568 14 FFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHIT 90 (329)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCE
Confidence 346789999999999999999998543333342 2211 1134654 4456778999999999
Q ss_pred EEEecCCCcCcCCChhhhhhhhhh------cCCC--------CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCC
Q 012093 167 LILSLTNNWDAYGGKAQYVKWGKA------AGLN--------LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 232 (471)
Q Consensus 167 vil~l~~~w~~~gG~~~y~~W~~~------~G~~--------~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~ 232 (471)
||.++.- .|.+.. |... .+.. .....-..++|+..+..++.+++++.- +.
T Consensus 91 vIPEiD~----PGH~~a---~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~- 154 (329)
T cd06568 91 VVPEIDM----PGHTNA---ALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TP- 154 (329)
T ss_pred EEEecCC----cHHHHH---HHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CC-
Confidence 9999831 222211 1110 1100 000112345788888888888888875 42
Q ss_pred CCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 233 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 233 ~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
.+.|. -=+-|..... .+.+..+++++.+.+++.. .+++
T Consensus 155 ~~~iH--iGgDE~~~~~---~~~~~~f~~~~~~~v~~~G-k~~~ 192 (329)
T cd06568 155 GPYIH--IGGDEAHSTP---HDDYAYFVNRVRAIVAKYG-KTPV 192 (329)
T ss_pred CCeEE--EecccCCCCc---hHHHHHHHHHHHHHHHHCC-CeEE
Confidence 23221 2234444321 3567778899999999875 3444
No 65
>PLN00197 beta-amylase; Provisional
Probab=92.73 E-value=1 Score=47.70 Aligned_cols=123 Identities=17% Similarity=0.289 Sum_probs=77.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~-- 182 (471)
+++.++..|+.+|.+|+.-|=+-+. |..++. .|+.|| |..+.++++++++.||+|.+.+.- ...||.-
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvW----WGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSF--HqCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVW----WGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSF--HQCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeee----eeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEe--cccCCCCCC
Confidence 4678999999999999999988432 555554 678898 788889999999999998766531 1233320
Q ss_pred ----hhhhhhhhcCCCCCCCCCcCCC----------------------HHHHHHHHHHHHHHHhccccccccccCCCCcE
Q 012093 183 ----QYVKWGKAAGLNLTSDDEFFSH----------------------TTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTI 236 (471)
Q Consensus 183 ----~y~~W~~~~G~~~~~~~~f~~~----------------------~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I 236 (471)
..+.|....|.. ..+-||+| ....+.|.++++.+-.....| ++ ..|
T Consensus 196 ~~~IpLP~WV~~~g~~--dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~----l~--~~I 267 (573)
T PLN00197 196 SCTIPLPKWVVEEVDK--DPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHL----LG--DTI 267 (573)
T ss_pred cccccCCHHHHHhhcc--CCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHH----hc--Cce
Confidence 135576542211 01112222 223578888888877763222 12 357
Q ss_pred EEEEeecCC
Q 012093 237 FAWELMNEP 245 (471)
Q Consensus 237 ~~wel~NEp 245 (471)
.-.+++==|
T Consensus 268 ~eI~VGlGP 276 (573)
T PLN00197 268 VEIQVGMGP 276 (573)
T ss_pred eEEEeccCc
Confidence 767765443
No 66
>PRK14706 glycogen branching enzyme; Provisional
Probab=92.70 E-value=3.6 Score=45.50 Aligned_cols=159 Identities=9% Similarity=0.149 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccC----CCccc-----cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc-
Q 012093 109 KVSELFHQASSAGLTVCRTWAFND----GQWRA-----LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA- 177 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~----~~~~~-----~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~- 177 (471)
..++-++.+|++|+|+|=+....+ ..|.. +.+.+ .|. ..+.|.++|+.|.++||+||+++. |+...
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~-~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS-RLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 444445899999999999843211 11210 11111 221 246678899999999999999973 32110
Q ss_pred ------CCChhhh--hhhhhhcCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEE------e
Q 012093 178 ------YGGKAQY--VKWGKAAGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE------L 241 (471)
Q Consensus 178 ------~gG~~~y--~~W~~~~G~~--~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~we------l 241 (471)
+.|.+.| ..+. .|.. .++..--+.+|++++.+.+-++.-++..+ +-|.++-.-.+++-++ +
T Consensus 246 ~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~-iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH-VDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeehheeecccCccccc
Confidence 0011111 0000 0100 00001113478888888888888886411 2222222112333222 2
Q ss_pred ecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 242 MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 242 ~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
.|+.+... ......+++++.+.||+..|+.++
T Consensus 323 ~~~~gg~~---n~~a~~fl~~ln~~v~~~~p~~~~ 354 (639)
T PRK14706 323 PNIHGGRE---NLEAIAFLKRLNEVTHHMAPGCMM 354 (639)
T ss_pred ccccCCcc---cHHHHHHHHHHHHHHHHhCCCeEE
Confidence 23332211 134556888999999999887644
No 67
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=1.1 Score=46.36 Aligned_cols=165 Identities=15% Similarity=0.275 Sum_probs=93.2
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCC--cc-cc----CCCCCCC-ChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQ--WR-AL----QTSPSVY-DEEVFKALDFVISEAKKYKIRLILSLTNNWD 176 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~--~~-~~----~~~~g~~-~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 176 (471)
.++.++.+-|+.++++|+|+|=.-+-+++. |+ .+ ...||.. -+..++-|-.+|++|+++||.|+. |.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~a-----Wf 135 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHA-----WF 135 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeee-----ch
Confidence 468899999999999999998775443331 11 01 1113322 244566777899999999999964 33
Q ss_pred cCCChh--------hhhhhhhhc--CCCC--CCC--CCcCCC---HHHHHHHHHHHHHHHhccccccccccCCCCcEEEE
Q 012093 177 AYGGKA--------QYVKWGKAA--GLNL--TSD--DEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 239 (471)
Q Consensus 177 ~~gG~~--------~y~~W~~~~--G~~~--~~~--~~f~~~---~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~w 239 (471)
..+.+. .+..|.... |.-. ... ..++-| |+.++.+.+.+.++|++- ..-|+.+-+| +.
T Consensus 136 ~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y-dvDGIQfDd~---fy- 210 (418)
T COG1649 136 NPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY-DVDGIQFDDY---FY- 210 (418)
T ss_pred hhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC-CCCceeccee---ec-
Confidence 332221 111222110 0000 001 244444 789999999999999981 1123333332 21
Q ss_pred EeecCCCCCCC--------C------Ch--------hHHHHHHHHHHHHhhccCCCCEEEecc
Q 012093 240 ELMNEPRCTSD--------P------SG--------DTLQSWIQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 240 el~NEp~~~~~--------~------~g--------~~~~~w~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
.-.+-..... . +. +...+++.++...||++.|+..+++..
T Consensus 211 -~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp 272 (418)
T COG1649 211 -YPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSP 272 (418)
T ss_pred -ccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 1111111100 0 01 234445678899999999999998875
No 68
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=92.31 E-value=0.2 Score=49.28 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeec-cCC-CccccCCCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAF-NDG-QWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~-~~~-~~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
-..+.+.|+.+|++|+|+|-+... ... .+..+.+.. -..++ ...+.|.++|++|+++||+||+++.
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 355777899999999999999542 211 111111100 00011 2356788999999999999999984
No 69
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=92.20 E-value=4.3 Score=41.33 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhCCCCEEEEee-ccCC--CccccCCCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWA-FNDG--QWRALQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 179 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~-~~~~--~~~~~~~~~g~~~----~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 179 (471)
.-..++.++.+|++|+.-|=+-. +.|+ -|+.-. ..|+ ...-+.+.+++++|+++||++.+-++- ++.+.
T Consensus 90 ~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~---t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~-~dw~~ 165 (346)
T PF01120_consen 90 KFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKY---TDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP-WDWHH 165 (346)
T ss_dssp T--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT----SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES-SSCCC
T ss_pred cCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCC---CcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc-hHhcC
Confidence 34567889999999999776522 2222 132110 1122 122366778899999999999998752 22211
Q ss_pred ChhhhhhhhhhcCCCCCCCCCcCCCHH-HHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 180 GKAQYVKWGKAAGLNLTSDDEFFSHTT-LKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 180 G~~~y~~W~~~~G~~~~~~~~f~~~~~-~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
+.|..-...... .....--..++ +.+.+...+++|++| | +|.++=++.+..... ...
T Consensus 166 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~------~~~-- 223 (346)
T PF01120_consen 166 --PDYPPDEEGDEN--GPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD------EDW-- 223 (346)
T ss_dssp --TTTTSSCHCHHC--C--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC------THH--
T ss_pred --cccCCCccCCcc--cccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc------ccc--
Confidence 111000000000 00000000122 334778999999999 9 788998888877522 112
Q ss_pred HHHHHHHHhhccCCCCEEEe
Q 012093 259 WIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 259 w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
-..++.+.||++.|+.+|.-
T Consensus 224 ~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 224 DSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HHHHHHHHHHHHSTTSEEEC
T ss_pred CHHHHHHHHHHhCCeEEEec
Confidence 12788899999999888763
No 70
>PLN02960 alpha-amylase
Probab=92.09 E-value=5.5 Score=45.16 Aligned_cols=169 Identities=6% Similarity=0.033 Sum_probs=87.4
Q ss_pred chhHH-HHHHHHHHhCCCCEEEEeecc---C-CCcc--c---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CC
Q 012093 106 TRGKV-SELFHQASSAGLTVCRTWAFN---D-GQWR--A---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NN 174 (471)
Q Consensus 106 ~~~~~-~~dl~~mk~~G~N~vR~~~~~---~-~~~~--~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~ 174 (471)
+-..+ ++.|+.++++|+|+|=+.... + ..|. . +.+.+ .|. ..+.|.++|+.|+++||+||+++. |+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~-~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSS-RFG--TPDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 44444 566999999999999984321 1 1121 0 11111 222 146678899999999999999973 32
Q ss_pred cCcC--CChhhhhh---hhhh---cCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe--e
Q 012093 175 WDAY--GGKAQYVK---WGKA---AGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--M 242 (471)
Q Consensus 175 w~~~--gG~~~y~~---W~~~---~G~--~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel--~ 242 (471)
.... .|...+.. +.-. .|. ..+...-=+.++++++.+.+-++..++.. .+-|.++-.-.+++...- .
T Consensus 491 ~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey-hIDGfR~DAV~sMlY~d~g~~ 569 (897)
T PLN02960 491 AAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY-RVDGFQFHSLGSMLYTHNGFA 569 (897)
T ss_pred cCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-CCCceeecccceeeeeccCcc
Confidence 1110 01100000 0000 000 00001112456888888888888888651 123433433344443321 1
Q ss_pred cCCCC---CCC-CChhHHHHHHHHHHHHhhccCCCCEEEe
Q 012093 243 NEPRC---TSD-PSGDTLQSWIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 243 NEp~~---~~~-~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
++++. ... ........+++++.+.|++..|+.++..
T Consensus 570 ~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 570 SFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred ccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 11210 000 0113466788999999999888775443
No 71
>PRK14705 glycogen branching enzyme; Provisional
Probab=91.21 E-value=5 Score=47.43 Aligned_cols=183 Identities=14% Similarity=0.189 Sum_probs=90.3
Q ss_pred EEeeccchhhhcc-CCCc-hhHHHHHHHHHHhCCCCEEEEeecc----CCCcc--c---cCCCCCCCChHHHHHHHHHHH
Q 012093 90 NGFNTYWLMVFAA-DQST-RGKVSELFHQASSAGLTVCRTWAFN----DGQWR--A---LQTSPSVYDEEVFKALDFVIS 158 (471)
Q Consensus 90 ~G~N~~~~~~~~~-~~~~-~~~~~~dl~~mk~~G~N~vR~~~~~----~~~~~--~---~~~~~g~~~~~~l~~lD~~l~ 158 (471)
..++.|+...... ...+ .+..++-++.+|++|+|+|=+.... +..|. . +.+.+ .|. ..+.|.++|+
T Consensus 746 ~p~~IYEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~-ryG--t~~dfk~lVd 822 (1224)
T PRK14705 746 SPMSVYEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTS-RFG--HPDEFRFLVD 822 (1224)
T ss_pred CCcEEEEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCc-ccC--CHHHHHHHHH
Confidence 3456666533221 1123 3344555799999999999984321 11231 1 11111 222 2456788999
Q ss_pred HHHHcCCEEEEecC-CCcCc-------CCChhhhhhhhhhcCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccc
Q 012093 159 EAKKYKIRLILSLT-NNWDA-------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNL 228 (471)
Q Consensus 159 ~a~~~Gi~vil~l~-~~w~~-------~gG~~~y~~W~~~~G~--~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~ 228 (471)
.|+++||+||+++. |+... +.|.+.|-.-....|. ..+...--+.++++++.+.+-++..+++. .+-|.
T Consensus 823 ~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey-hiDGf 901 (1224)
T PRK14705 823 SLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF-HIDGL 901 (1224)
T ss_pred HHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCCcE
Confidence 99999999999974 22110 0110001000000000 00000111457888888888888888761 11121
Q ss_pred ccCCCCcEEEEEeecC-----CCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 229 TYKNDPTIFAWELMNE-----PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 229 ~yk~~p~I~~wel~NE-----p~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
++---.+++-.+-.-+ |+............+++++.+.|++..|+.++
T Consensus 902 R~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~ 954 (1224)
T PRK14705 902 RVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVM 954 (1224)
T ss_pred EEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEE
Confidence 1111123322222212 21111011123567889999999999887644
No 72
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=91.08 E-value=13 Score=37.95 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=65.2
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccCC-----CCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT-----SPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~~-----~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+.+.+.++.|+...+|++-++.-.+..|+ .+.. ..|.|.. +.+..+++.|+++||.||.++.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCCEEEEecc
Confidence 45789999999999999999997443333342 1110 0133553 4556788999999999999973
Q ss_pred CCcCcCCChhhhhhhhhhcCC-----------CCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 173 NNWDAYGGKAQYVKWGKAAGL-----------NLTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 173 ~~w~~~gG~~~y~~W~~~~G~-----------~~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
- .|.+.....+....+. ......--.++|+..+..++.++++++-
T Consensus 92 ~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 92 T----PGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred C----chhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 1 2222111111000000 0000111235678888888888888886
No 73
>PRK12568 glycogen branching enzyme; Provisional
Probab=91.07 E-value=9.9 Score=42.56 Aligned_cols=163 Identities=10% Similarity=0.156 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccC----CCcc--c---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFND----GQWR--A---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA 177 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~----~~~~--~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~ 177 (471)
+..++-|+.+|++|+|+|=+....+ ..|. + +.+.+ .|. ..+.|.++|+.|.++||+||+++. |+...
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445567999999999999843211 1121 1 11222 121 245678899999999999999974 22111
Q ss_pred -------CCChhhhhhhhhhcCC--CCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe-------
Q 012093 178 -------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL------- 241 (471)
Q Consensus 178 -------~gG~~~y~~W~~~~G~--~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel------- 241 (471)
+.|...|.......|. ......-=+.+|++++.+.+-++.-++.. .+-|.++-.-.+++..+-
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey-hIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY-HLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh-CceEEEEcCHhHhhhhccccccccc
Confidence 1111111100000010 00000112457888888888888887651 112222221123332221
Q ss_pred -ecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 242 -MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 242 -~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
-|+-+... .-....+++++.+.||+..|+.++.
T Consensus 426 ~pn~~gg~e---n~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 426 VPNAHGGRE---NLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cccccCCcc---ChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 13321110 1134578899999999999987543
No 74
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.65 E-value=15 Score=37.60 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=65.6
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccCC---------------------CCCCCChHHHHHHHHH
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT---------------------SPSVYDEEVFKALDFV 156 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~~---------------------~~g~~~~~~l~~lD~~ 156 (471)
.+.+.+.+.++.|+..++|++-++...+..|+ .+.. ..|.|.. +.+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~---~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ---EEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH---HHHHHH
Confidence 45788999999999999999998554333342 1110 0134543 455678
Q ss_pred HHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCC-----------CCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 157 ISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN-----------LTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~-----------~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
++.|+++||.||.++. ..|.+.....+...-+.. .....-...+|+..+..++.++++++-
T Consensus 92 v~yA~~rgI~VIPEID----~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 92 VAYAAERGITVIPEID----MPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHHHcCCEEEEecC----CchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 8999999999999973 122222111110000000 001112345688888888888888875
No 75
>PLN02361 alpha-amylase
Probab=90.48 E-value=1.3 Score=45.90 Aligned_cols=86 Identities=10% Similarity=0.074 Sum_probs=53.2
Q ss_pred ECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCC-CccccCCCC-CCCCh--HHHHHHHHHH
Q 012093 82 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDE--EVFKALDFVI 157 (471)
Q Consensus 82 ~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~-~~~~~~~~~-g~~~~--~~l~~lD~~l 157 (471)
-+|..+.+-|+|- +.+. . .--..+.+.++.++++|+++|=+...... ....+.+.. -..++ ...+.|..+|
T Consensus 8 ~~~~~v~lQ~F~W-~~~~-~---~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li 82 (401)
T PLN02361 8 RNGREILLQAFNW-ESHK-H---DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLL 82 (401)
T ss_pred cCCCcEEEEEEec-cCCc-c---HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 4678889999982 1211 1 01357888899999999999988532111 000111100 00011 1245678899
Q ss_pred HHHHHcCCEEEEecC
Q 012093 158 SEAKKYKIRLILSLT 172 (471)
Q Consensus 158 ~~a~~~Gi~vil~l~ 172 (471)
+.|+++||+||+++.
T Consensus 83 ~~~h~~gi~vi~D~V 97 (401)
T PLN02361 83 RKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHcCCEEEEEEc
Confidence 999999999999974
No 76
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=89.91 E-value=0.73 Score=44.03 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHHHHHhccccccccccCCC---CcEEEEEeecCCCCCCC------CC---hhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 212 KAHVKTVLNRVNTFTNLTYKND---PTIFAWELMNEPRCTSD------PS---GDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 212 ~~~~~~lv~R~N~~tg~~yk~~---p~I~~wel~NEp~~~~~------~~---g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
.+++..|+++ |++. -.|-.|+|-|||..... +. .+.+..-.-+++++||+.||+..|+
T Consensus 107 ~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 107 DEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp HHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 3446666666 5443 35888999999986431 11 2334444567899999999999875
No 77
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=89.91 E-value=1.6 Score=44.17 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=85.3
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCccc----cC--CCCC---------CCChHHHHHHHHHHHHHHHcCCEEE
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRA----LQ--TSPS---------VYDEEVFKALDFVISEAKKYKIRLI 168 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~----~~--~~~g---------~~~~~~l~~lD~~l~~a~~~Gi~vi 168 (471)
..+.+.+.+-++.|+..++|++-++...+..|+- +. ...| .|.. +.+.++++.|+++||.||
T Consensus 14 ~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VI 90 (351)
T PF00728_consen 14 FFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVI 90 (351)
T ss_dssp -B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCcee
Confidence 3457899999999999999999985543323321 10 0112 4543 456678899999999999
Q ss_pred EecCCCcCcCCChhhhhhhhhhcCCC-------------CC--CCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 012093 169 LSLTNNWDAYGGKAQYVKWGKAAGLN-------------LT--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 233 (471)
Q Consensus 169 l~l~~~w~~~gG~~~y~~W~~~~G~~-------------~~--~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~ 233 (471)
+++. ..|.+.....+....+.. .. ...-..++|+..+..++.+++++.- +. .
T Consensus 91 Peid----~PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~ 157 (351)
T PF00728_consen 91 PEID----TPGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-S 157 (351)
T ss_dssp EEEE----ESSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-S
T ss_pred eecc----CchHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-C
Confidence 9973 223332222221111110 00 0012345788889899999999886 54 3
Q ss_pred CcEEEEEeecCCCCCCCCC----------------hhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 234 PTIFAWELMNEPRCTSDPS----------------GDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 234 p~I~~wel~NEp~~~~~~~----------------g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
+.|. -=+-|........ .+.+..+++++.+.+++...+ ++.
T Consensus 158 ~~iH--iGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~ 214 (351)
T PF00728_consen 158 KYIH--IGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PII 214 (351)
T ss_dssp SEEE--EE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEE
T ss_pred CeEE--eCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEE
Confidence 4332 2255665211000 022345677888999987655 444
No 78
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=89.22 E-value=0.66 Score=47.66 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCC-CCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
...++..|+.+|++|+..|=+-+. |..++.. |+.|| |..++++++++++.||++.+.+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvW----WGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vm 73 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVW----WGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVM 73 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEE----HHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeE----eeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEE
Confidence 458999999999999999988443 5555554 78887 8888999999999999997665
No 79
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=88.25 E-value=11 Score=37.72 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccCC--C-CCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT--S-PSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~~--~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+.+.+.|+.|+..++|++-++.-.+..|+ .+.. + .|.|..+. +..+++.|+++||.||.++.
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~d---i~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQ---IREVVAYARDRGIRVVPEID 89 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHH---HHHHHHHHHHcCCEEEEeec
Confidence 45789999999999999999998543333443 2210 1 13566544 45778999999999999973
No 80
>PRK09936 hypothetical protein; Provisional
Probab=87.65 E-value=20 Score=35.30 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=76.5
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 183 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~ 183 (471)
..+++.+++-+..++..|++++=+ .|..+..+ .|... =..|-+.++.|.+.||+|++-|.- + +.
T Consensus 34 ~~~~~qWq~~~~~~~~~G~~tLiv------QWt~yG~~--~fg~~-~g~La~~l~~A~~~Gl~v~vGL~~---D----p~ 97 (296)
T PRK09936 34 QVTDTQWQGLWSQLRLQGFDTLVV------QWTRYGDA--DFGGQ-RGWLAKRLAAAQQAGLKLVVGLYA---D----PE 97 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEE------EeeeccCC--Ccccc-hHHHHHHHHHHHHcCCEEEEcccC---C----hH
Confidence 356889999999999999999877 13222111 11100 134557789999999999999852 1 22
Q ss_pred hhhhhhhcCCCCCCCCCcCCCHH----HHHHHHHHHHHHHhccccccccccCCCCcE--EEEEeecCCCCCCCCCh---h
Q 012093 184 YVKWGKAAGLNLTSDDEFFSHTT----LKSYYKAHVKTVLNRVNTFTNLTYKNDPTI--FAWELMNEPRCTSDPSG---D 254 (471)
Q Consensus 184 y~~W~~~~G~~~~~~~~f~~~~~----~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I--~~wel~NEp~~~~~~~g---~ 254 (471)
|-.+.. .|+. +.+.....-....++ ...++.+ -+|=+==|++....... +
T Consensus 98 y~q~~~-------------~d~~~~~~yl~~~l~~~~~qa~~--------~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~ 156 (296)
T PRK09936 98 FFMHQK-------------QDGAALESYLNRQLGASLQQARL--------WSAAWGVPVDGWYLPAELDDLNWRDEARRQ 156 (296)
T ss_pred HHHHHh-------------cCchhHHHHHHHHHHHHHHHHHH--------HHhccCCCCCeEEeeeccchhcccCHHHHH
Confidence 322211 1322 222222222223333 4555444 88999999886432222 2
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEecc
Q 012093 255 TLQSWIQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 255 ~~~~w~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
.+..|+....+.+. .+.+||.|..
T Consensus 157 ~L~~~L~~~~~~l~--~~~kPv~ISa 180 (296)
T PRK09936 157 PLLTWLNAAQRLID--VSAKPVHISA 180 (296)
T ss_pred HHHHHHHHHHHhCC--CCCCCeEEEe
Confidence 33344444433333 2466777653
No 81
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=85.77 E-value=2.8 Score=45.60 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccC-C----Cccc---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFND-G----QWRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~-~----~~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+-..+.+.|+.++++|+++|=+..+.. . .|.. +...| .| ...+.|+.+++.|+++||+||+++.
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~--Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TY--GTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-cc--CCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456777889999999999998843211 0 1110 00111 11 1246788999999999999999984
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=85.10 E-value=3 Score=45.27 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEee-ccCC----Cccc---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWA-FNDG----QWRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~-~~~~----~~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+...+.+.|+.++++|+|+|=+.. |... .|.. +...| .| ...+.|..+++.|+++||+||+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~-~~--Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINP-LF--GTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCc-cc--CCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3566788889999999999998843 2111 1100 00111 11 1346788999999999999999974
No 83
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=84.78 E-value=2.5 Score=45.84 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=43.7
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEee-ccCCC-ccccCCCC-CCCChH--HHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWA-FNDGQ-WRALQTSP-SVYDEE--VFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~-~~~~~-~~~~~~~~-g~~~~~--~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+-..+.+.|+.++++|+|+|=+.. |.... ...+.+.. -..++. ..+.|.++|+.|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4567788889999999999998843 22110 00000000 011221 246788999999999999999974
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=84.74 E-value=3 Score=46.36 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=42.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEee-ccCC---------------CccccCCCC-CCCCh--HHHHHHHHHHHHHHHcCCE
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWA-FNDG---------------QWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~-~~~~---------------~~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~ 166 (471)
+-..+.+-|+.++++|+|+|=+.. +... .++.+.+.. -..|+ ...+.|..+|+.|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 345577889999999999998743 2110 011110000 01122 1356788999999999999
Q ss_pred EEEecC
Q 012093 167 LILSLT 172 (471)
Q Consensus 167 vil~l~ 172 (471)
||+++.
T Consensus 308 VilD~V 313 (683)
T PRK09505 308 ILFDVV 313 (683)
T ss_pred EEEEEC
Confidence 999974
No 85
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=84.58 E-value=2.8 Score=41.91 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.-.+.++.|.+.|+.-|=++... +. .-++.++.++++++..|.++|++||++..
T Consensus 15 ~~~~~~Yi~~~~~~Gf~~IFtsl~~--------~~--~~~~~~~~~~~ell~~Anklg~~vivDvn 70 (360)
T COG3589 15 KEKDIAYIDRMHKYGFKRIFTSLLI--------PE--EDAELYFHRFKELLKEANKLGLRVIVDVN 70 (360)
T ss_pred chhHHHHHHHHHHcCccceeeeccc--------CC--chHHHHHHHHHHHHHHHHhcCcEEEEEcC
Confidence 4667789999999999955544321 11 12356899999999999999999999973
No 86
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=84.52 E-value=3.2 Score=46.51 Aligned_cols=165 Identities=8% Similarity=0.141 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccC----CCcc--c---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc-
Q 012093 109 KVSELFHQASSAGLTVCRTWAFND----GQWR--A---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA- 177 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~----~~~~--~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~- 177 (471)
..++-|+.+|++|+|+|=+....+ ..|. . +.+.+ .|. ..+.|.++|+.|.++||+||+++. |+...
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 356779999999999999843211 1121 0 11111 121 135677889999999999999974 22110
Q ss_pred C-CChhhhh----hhhhh--cCCC--CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC--
Q 012093 178 Y-GGKAQYV----KWGKA--AGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR-- 246 (471)
Q Consensus 178 ~-gG~~~y~----~W~~~--~G~~--~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~-- 246 (471)
. .|...+. .|... .|.. .....--+.++++++.+.+-++..++.. .+-|.++-.-.+++-..-+-.+.
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey-~IDGfRfDaV~smlY~~hg~~~~f~ 407 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY-KFDGFRFDGVTSMLYHHHGLQMAFT 407 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh-CcccccccchhhhhccccCcccccc
Confidence 0 0110000 01100 0000 0000111446888888888888888751 12232232223343221111111
Q ss_pred -----CCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 247 -----CTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 247 -----~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
............+++.+.+.|++..|+.+..
T Consensus 408 ~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 408 GNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred cCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 1111111345668889999999999986543
No 87
>PRK03705 glycogen debranching enzyme; Provisional
Probab=84.52 E-value=2.2 Score=47.31 Aligned_cols=59 Identities=15% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCEEEEee-cc--CC----------Cc--cc---cCCCCCCCCh---HHHHHHHHHHHHHHHcCCEEEEec
Q 012093 113 LFHQASSAGLTVCRTWA-FN--DG----------QW--RA---LQTSPSVYDE---EVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 113 dl~~mk~~G~N~vR~~~-~~--~~----------~~--~~---~~~~~g~~~~---~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
-|+.+|++|+|+|=+.. +. .. -| .+ +.+.+ .|.. ..++.|.++|+.|+++||+||+++
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~-~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP-AYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc-ccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 48999999999998843 21 10 01 10 11111 2211 245678899999999999999997
Q ss_pred C
Q 012093 172 T 172 (471)
Q Consensus 172 ~ 172 (471)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 88
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.13 E-value=2.8 Score=44.73 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEee-ccCC---CccccCCCC----------CCCChH--HHHHHHHHHHHHHHcCCEEEEe
Q 012093 107 RGKVSELFHQASSAGLTVCRTWA-FNDG---QWRALQTSP----------SVYDEE--VFKALDFVISEAKKYKIRLILS 170 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~-~~~~---~~~~~~~~~----------g~~~~~--~l~~lD~~l~~a~~~Gi~vil~ 170 (471)
-..+.+-|+.++++|+|+|=+.. +... .+..+.+.. |..++. ..+.|..+|++|+++||+||++
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34577889999999999988743 2111 011111110 111221 2456788999999999999999
Q ss_pred cC
Q 012093 171 LT 172 (471)
Q Consensus 171 l~ 172 (471)
+.
T Consensus 101 ~V 102 (479)
T PRK09441 101 VV 102 (479)
T ss_pred EC
Confidence 74
No 89
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=84.09 E-value=5.9 Score=39.15 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=58.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCc---CCChh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA---YGGKA 182 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~---~gG~~ 182 (471)
+.+++.+.-+++++.|+|.|=+- +.. ..+....++.++.+-++-+..+.|||+|.|++. +.. .||.+
T Consensus 55 ~~~R~~~YARllASiGINgvvlN---NVN-----a~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~ 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLN---NVN-----ANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S----SS-------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S
T ss_pred chhHHHHHHHHHhhcCCceEEec---ccc-----cChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC
Confidence 35788999999999999998872 221 111244567789999999999999999999972 211 12221
Q ss_pred hhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 183 QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 183 ~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
. .---||+.++++++...+|-++
T Consensus 125 T----------------aDPld~~V~~WW~~k~~eIY~~ 147 (328)
T PF07488_consen 125 T----------------ADPLDPEVRQWWKDKADEIYSA 147 (328)
T ss_dssp -------------------TTSHHHHHHHHHHHHHHHHH
T ss_pred c----------------CCCCCHHHHHHHHHHHHHHHHh
Confidence 1 1124789999999999888766
No 90
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.08 E-value=2.8 Score=45.78 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=49.7
Q ss_pred EeeccchhhhccCC----CchhHHHHHHHHHHhCCCCEEEEeecc----CCCccc-----cCCCCCCC-ChHHHHHHHHH
Q 012093 91 GFNTYWLMVFAADQ----STRGKVSELFHQASSAGLTVCRTWAFN----DGQWRA-----LQTSPSVY-DEEVFKALDFV 156 (471)
Q Consensus 91 G~N~~~~~~~~~~~----~~~~~~~~dl~~mk~~G~N~vR~~~~~----~~~~~~-----~~~~~g~~-~~~~l~~lD~~ 156 (471)
.++.|++..-...+ ...+..++-|..+|++|+|+|=+.... +.+|.. +.|.. .| .++ .|.++
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s-ryGtPe---dfk~f 219 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS-RYGTPE---DFKAL 219 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc-cCCCHH---HHHHH
Confidence 45666654322222 347888999999999999999995422 223421 11111 12 234 44577
Q ss_pred HHHHHHcCCEEEEecC
Q 012093 157 ISEAKKYKIRLILSLT 172 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~ 172 (471)
||.|.++||-|||+..
T Consensus 220 VD~aH~~GIgViLD~V 235 (628)
T COG0296 220 VDAAHQAGIGVILDWV 235 (628)
T ss_pred HHHHHHcCCEEEEEec
Confidence 9999999999999963
No 91
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=83.86 E-value=5.1 Score=40.74 Aligned_cols=94 Identities=15% Similarity=0.244 Sum_probs=63.3
Q ss_pred HHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCC-HHHHHHHHHHHHHHHhccccccccccCCCC
Q 012093 156 VISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSH-TTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 234 (471)
Q Consensus 156 ~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~-~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p 234 (471)
+++.|+|+|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+.+-.+++. |+=+-
T Consensus 51 ~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfDG 106 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFDG 106 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCCc
Confidence 458999999999999876553 222 1221 23444 67777888888888887 66544
Q ss_pred cEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 235 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 235 ~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
|.+-=|-........+.+.++++++.+.+++..|...|.
T Consensus 107 ----w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 107 ----WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred ----eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 444333333111124688999999999999998887775
No 92
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=83.35 E-value=6.4 Score=39.60 Aligned_cols=159 Identities=12% Similarity=0.127 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccC----------------------C----Ccccc---CCCCC----CCChHHH
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFND----------------------G----QWRAL---QTSPS----VYDEEVF 150 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~----------------------~----~~~~~---~~~~g----~~~~~~l 150 (471)
..+-+++++.|+.|+=+|+|..=.+.-.+ + .|.+. +.-.| .+-+...
T Consensus 15 ~WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~ 94 (333)
T PF05089_consen 15 WWDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQA 94 (333)
T ss_dssp T--HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHH
Confidence 35678999999999999999876643110 0 02111 11112 2223344
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCcCCCh-hhh--------hhhhhhcCCCCCCCCCc--CCCHHHHHHHHHHHHHHH
Q 012093 151 KALDFVISEAKKYKIRLILSLTNNWDAYGGK-AQY--------VKWGKAAGLNLTSDDEF--FSHTTLKSYYKAHVKTVL 219 (471)
Q Consensus 151 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~-~~y--------~~W~~~~G~~~~~~~~f--~~~~~~~~~~~~~~~~lv 219 (471)
+.=.++++..++.||..|+..+..-.. ... ..| ..|..-. ...+ -+||-..+.-+.++++..
T Consensus 95 ~Lq~kIl~RmreLGm~PVLPaF~G~VP-~~~~~~~P~a~i~~~~~W~~f~------~~~~L~P~dplF~~i~~~F~~~q~ 167 (333)
T PF05089_consen 95 ELQKKILDRMRELGMTPVLPAFAGHVP-RAFKRKYPNANITRQGNWNGFC------RPYFLDPTDPLFAEIAKLFYEEQI 167 (333)
T ss_dssp HHHHHHHHHHHHHT-EEEEE--S-EE--TTHHHHSTT--EE---EETTEE--------EEE-SS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCCCcCCCCC-hHHHhcCCCCEEeeCCCcCCCC------CCceeCCCCchHHHHHHHHHHHHH
Confidence 444689999999999999987531100 000 001 1121100 0011 246777788888899888
Q ss_pred hccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCE-EEec
Q 012093 220 NRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHL-VEIG 279 (471)
Q Consensus 220 ~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~l-V~~g 279 (471)
+. |+ ...+.+-+..||-...... .+-+.+-.+.+.+.+++.||+.. |..|
T Consensus 168 ~~--------yG-~~~~Y~~D~FnE~~p~~~~-~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 168 KL--------YG-TDHIYAADPFNEGGPPSGD-PEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp HH--------H----SEEE--TTTTS---TTS----HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred Hh--------cC-CCceeCCCccCCCCCCCCc-hHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 88 88 6689999999998875421 23366777888999999999875 4444
No 93
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=81.97 E-value=17 Score=35.64 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=53.8
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 162 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 162 (471)
+|+.+.+.|-+. ..+.+.+.+.-+.+|++|+.++|...|-+ + ++|..|..-..+.+..+-+.|++
T Consensus 25 ~~~~~~iaGPCs---------ie~~~~~~~~A~~lk~~g~~~~r~~~~kp----R--Ts~~s~~G~g~~gl~~l~~~~~~ 89 (266)
T PRK13398 25 GEEKIIIAGPCA---------VESEEQMVKVAEKLKELGVHMLRGGAFKP----R--TSPYSFQGLGEEGLKILKEVGDK 89 (266)
T ss_pred CCCEEEEEeCCc---------CCCHHHHHHHHHHHHHcCCCEEEEeeecC----C--CCCCccCCcHHHHHHHHHHHHHH
Confidence 455677888885 23567888888999999999999976531 1 12223332234556667788999
Q ss_pred cCCEEEEecCC
Q 012093 163 YKIRLILSLTN 173 (471)
Q Consensus 163 ~Gi~vil~l~~ 173 (471)
.||.++-++++
T Consensus 90 ~Gl~~~te~~d 100 (266)
T PRK13398 90 YNLPVVTEVMD 100 (266)
T ss_pred cCCCEEEeeCC
Confidence 99999999875
No 94
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=81.51 E-value=4 Score=46.07 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeec-c--CCCccccCC-CCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAF-N--DGQWRALQT-SPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~-~--~~~~~~~~~-~~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+-+.+.+.++.++++|+++|=+..+ . .+....+.. .....|+ ...+.|..+++.|+++||+||+++.
T Consensus 13 ~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 13 FTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 35678999999999999999987542 1 111011100 0011111 1256778899999999999999974
No 95
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=81.12 E-value=14 Score=37.03 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=55.5
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCC--CccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 181 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~--~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~ 181 (471)
|++.+.-.+.|+.|++.|+|+ .+|... .+++- .-...|.++.++.|.++++.|++.|+..+..++- |+
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~---YiYAPKdDpyhr~-~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP------g~ 80 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNT---YIYAPKDDPYHRS-KWREPYPEEELAELKELADAAKANGVDFVYAISP------GL 80 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--E---EEE--TT-TTTTT-TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG------TT
T ss_pred CCCHHHHHHHHHHHHHcCCce---EEECCCCChHHHh-hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc------cc
Confidence 677788888999999999995 445422 22111 0113578899999999999999999999999862 11
Q ss_pred hhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 182 AQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 182 ~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
...+++++-.+..++.+.+|..-
T Consensus 81 -----------------~~~~s~~~d~~~L~~K~~ql~~l 103 (306)
T PF07555_consen 81 -----------------DICYSSEEDFEALKAKFDQLYDL 103 (306)
T ss_dssp -----------------T--TSHHHHHHHHHHHHHHHHCT
T ss_pred -----------------ccccCcHHHHHHHHHHHHHHHhc
Confidence 11245566677777777777653
No 96
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=81.10 E-value=8.3 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.049 Sum_probs=43.3
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
..+.+.+++||+++++.||..+=+-+... ++-..++|..++++|++.|++|++.+
T Consensus 13 ~yt~~dw~~di~~A~~~GIDgFaLNig~~-------------d~~~~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 13 NYTQEDWEADIRLAQAAGIDGFALNIGSS-------------DSWQPDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecccC-------------CcccHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999877733211 12225778889999999999999997
No 97
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=80.83 E-value=41 Score=34.78 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhCCCCEEEEee-ccCC--CccccCCCCCCCCh----HHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 012093 109 KVSELFHQASSAGLTVCRTWA-FNDG--QWRALQTSPSVYDE----EVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 181 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~-~~~~--~~~~~~~~~g~~~~----~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~ 181 (471)
..++.++++|++|++-|=+-. +.|+ -|+.-. ..|+. -.-+.+.++.++|+++||++-+-... ++.+.
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~---t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~-- 155 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKY---SNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN-- 155 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCCCC---CCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC--
Confidence 456788999999999776622 2221 132110 01110 02356678899999999999986532 21111
Q ss_pred hhhhhhhhhcCCCCCCCCCcCCCHHHHHHH---HHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHH
Q 012093 182 AQYVKWGKAAGLNLTSDDEFFSHTTLKSYY---KAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 258 (471)
Q Consensus 182 ~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~---~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~ 258 (471)
+.|.. .......-.+.+...+.+ ...+++|+.+ |+. .++=++...+-.. ...
T Consensus 156 p~y~~-------~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~~~-- 210 (384)
T smart00812 156 PLYAG-------PTSSDEDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------DYW-- 210 (384)
T ss_pred Ccccc-------ccccccccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------chh--
Confidence 11110 000001112233444444 8899999999 975 6776776543211 111
Q ss_pred HHHHHHHHhhccCCCC
Q 012093 259 WIQEMAVYVKSIDAKH 274 (471)
Q Consensus 259 w~~~~~~~Ir~~Dp~~ 274 (471)
-..++.+.||++.|+.
T Consensus 211 ~~~~l~~~~~~~qP~~ 226 (384)
T smart00812 211 RSKEFLAWLYNLSPVK 226 (384)
T ss_pred cHHHHHHHHHHhCCCC
Confidence 1367889999999987
No 98
>PLN00196 alpha-amylase; Provisional
Probab=80.60 E-value=9.2 Score=40.17 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=49.2
Q ss_pred EEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEee-ccCCCccccCC------CCCCCChHHHHHHHHHHH
Q 012093 86 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWA-FNDGQWRALQT------SPSVYDEEVFKALDFVIS 158 (471)
Q Consensus 86 p~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~-~~~~~~~~~~~------~~g~~~~~~l~~lD~~l~ 158 (471)
.+.+-|++ |..... +...-..+.+.|+.++++|+++|=+.. +.....+.+.+ .+..|. -.+.|..+++
T Consensus 25 ~v~~Q~F~--W~~~~~-~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~ 99 (428)
T PLN00196 25 QVLFQGFN--WESWKQ-NGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIE 99 (428)
T ss_pred CEEEEeec--cCCCCC-CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHH
Confidence 35677887 321110 112346688999999999999988743 21111111111 011121 1346788999
Q ss_pred HHHHcCCEEEEecC
Q 012093 159 EAKKYKIRLILSLT 172 (471)
Q Consensus 159 ~a~~~Gi~vil~l~ 172 (471)
.|+++||+||++..
T Consensus 100 ~aH~~GIkVilDvV 113 (428)
T PLN00196 100 AFHGKGVQVIADIV 113 (428)
T ss_pred HHHHCCCEEEEEEC
Confidence 99999999999973
No 99
>PLN02784 alpha-amylase
Probab=80.35 E-value=10 Score=43.02 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=53.4
Q ss_pred ECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCC-CccccCCCCCCC--Ch--HHHHHHHHH
Q 012093 82 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSPSVY--DE--EVFKALDFV 156 (471)
Q Consensus 82 ~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~-~~~~~~~~~g~~--~~--~~l~~lD~~ 156 (471)
-+|..+.+.|++- +.+..+. + -..+.+.++.++++|+|+|=+...... ....+.+.. .| ++ ...+.|..+
T Consensus 499 ~~~~eVmlQgF~W-ds~~dg~--w-~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D-~y~lds~yGT~~ELk~L 573 (894)
T PLN02784 499 GSGFEILCQGFNW-ESHKSGR--W-YMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKD-LYNLNSRYGTIDELKDL 573 (894)
T ss_pred cCCceEEEEeEEc-CcCCCCc--h-HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCccc-ccccCcCcCCHHHHHHH
Confidence 4678889999982 2222111 1 357788899999999999988532110 000111110 01 11 124567889
Q ss_pred HHHHHHcCCEEEEecC
Q 012093 157 ISEAKKYKIRLILSLT 172 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~ 172 (471)
|+.|+++||+||+++.
T Consensus 574 I~a~H~~GIkVIlDiV 589 (894)
T PLN02784 574 VKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHCCCEEEEEEC
Confidence 9999999999999974
No 100
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=79.64 E-value=6.8 Score=46.52 Aligned_cols=98 Identities=5% Similarity=-0.006 Sum_probs=62.3
Q ss_pred CcEEEeCCeEEECC-EEEEEEEeeccch-hhhccCCCchhHHHHHHHHHHhCCCCEEEEee-ccCCCc-cccCCCC-CCC
Q 012093 71 QMVQKQGNQFVVND-QPFYVNGFNTYWL-MVFAADQSTRGKVSELFHQASSAGLTVCRTWA-FNDGQW-RALQTSP-SVY 145 (471)
Q Consensus 71 gfv~v~g~~f~~nG-kp~~~~G~N~~~~-~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~-~~~~~~-~~~~~~~-g~~ 145 (471)
+++-|. -.|.+|| +.+-+-|++..-. +.. -.+-..+++.|+.++++|+|+|-+-. +.-+.. +++.... -.+
T Consensus 97 ~y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~---mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~i 172 (1464)
T TIGR01531 97 GYFVVL-PMLYINADKFLPLDSIALQTVLAKL---LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQL 172 (1464)
T ss_pred eEEEeC-CeeEECCCcccCcCceeeeeehhhh---cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhc
Confidence 344444 5788899 8888899987532 221 12347899999999999999998843 311110 0110000 012
Q ss_pred Ch------HHHHHHHHHHHHHHHc-CCEEEEecC
Q 012093 146 DE------EVFKALDFVISEAKKY-KIRLILSLT 172 (471)
Q Consensus 146 ~~------~~l~~lD~~l~~a~~~-Gi~vil~l~ 172 (471)
|+ ...+.+.++|+.|++. ||++|++..
T Consensus 173 dP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 173 NQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred ChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 22 2346688899999995 999999973
No 101
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=79.23 E-value=4.7 Score=45.86 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeecc---CCCccccCCC-CCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFN---DGQWRALQTS-PSVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~---~~~~~~~~~~-~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+-+.+.+.+..++++|+|+|=+..+. .+....+... ....|+ ...+.|..+++.|+++||+||+++.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 46789999999999999999885421 1111111000 011111 1246788999999999999999974
No 102
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=79.16 E-value=3.4 Score=45.42 Aligned_cols=144 Identities=16% Similarity=0.252 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCCCEEEEee-ccCC-----------Ccc--c---cCCCCCCC--C----hHHHHHHHHHHHHHHHcCCEE
Q 012093 111 SELFHQASSAGLTVCRTWA-FNDG-----------QWR--A---LQTSPSVY--D----EEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~-~~~~-----------~~~--~---~~~~~g~~--~----~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.+-|+.++++|+|+|=+.. +... .|. + +.+.+ .| + ....+.|..+|++|+++||+|
T Consensus 167 ~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~V 245 (605)
T TIGR02104 167 STGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRV 245 (605)
T ss_pred hhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEE
Confidence 3569999999999998843 2110 121 0 01110 11 1 112467889999999999999
Q ss_pred EEecC-CCcCcCCChhhhh----hhh---hhcCCCCCC---CCC-cCCCHHHHHHHHHHHHHHHhccccccccccCCCCc
Q 012093 168 ILSLT-NNWDAYGGKAQYV----KWG---KAAGLNLTS---DDE-FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPT 235 (471)
Q Consensus 168 il~l~-~~w~~~gG~~~y~----~W~---~~~G~~~~~---~~~-f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~ 235 (471)
|+++. |+-.. +....+. .|. ...|..... ..+ -..+|.+++.+.+.++..++. |+=+-
T Consensus 246 ilDvV~NH~~~-~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG- 315 (605)
T TIGR02104 246 IMDVVYNHTYS-REESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG- 315 (605)
T ss_pred EEEEEcCCccC-CCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE-
Confidence 99974 32110 0000010 010 001100000 011 134688888888888888876 43221
Q ss_pred EEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 236 IFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 236 I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
+-+++..... ..+++++.+.+|+.+|+..+
T Consensus 316 -fR~D~~~~~~----------~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 316 -FRFDLMGIHD----------IETMNEIRKALNKIDPNILL 345 (605)
T ss_pred -EEEechhcCC----------HHHHHHHHHHHHhhCCCeEE
Confidence 1234343221 22457778888888886544
No 103
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=79.15 E-value=62 Score=32.77 Aligned_cols=131 Identities=13% Similarity=0.180 Sum_probs=75.6
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
.+.+++++.++.+++.|+.+==+++ |..|.. ....-.+|++.+-....+++..++.|++|++-++..-....+.+.|
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y 97 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWL--DIEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVY 97 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEE--ChHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHH
Confidence 3578899999999999998665544 111210 0001135666666667889999999999999875321110011222
Q ss_pred hhhhh-------hcCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 012093 185 VKWGK-------AAGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 247 (471)
Q Consensus 185 ~~W~~-------~~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~ 247 (471)
..=.. ..|.+. ...---|++|+.++.+.+.++++... .+.+....|-=+|||..
T Consensus 98 ~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~---------~~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 98 KEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYK---------GSTENLYIWNDMNEPSV 165 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhc---------ccCCCceEEeccCCccc
Confidence 21000 011010 01112377899999999999887642 12333455777899864
No 104
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=78.78 E-value=0.99 Score=36.89 Aligned_cols=24 Identities=4% Similarity=-0.042 Sum_probs=20.7
Q ss_pred eeeccccccceeEEeeccceee-ee
Q 012093 39 FESTVEEIENHLSHASTHHGIY-DL 62 (471)
Q Consensus 39 ~~~~~~~~~~w~~~~~~~~~~~-~~ 62 (471)
+.+.+++++.|+++.|+||++. ++
T Consensus 69 ~~~~i~~~~lW~p~~P~LY~l~v~l 93 (110)
T PF00703_consen 69 LTIEIPNPKLWSPEDPYLYTLEVEL 93 (110)
T ss_dssp EEEEEESS-BBESSSBSEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCceEEEEEEEE
Confidence 5888999999999999999998 55
No 105
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.62 E-value=9.3 Score=36.99 Aligned_cols=75 Identities=9% Similarity=0.189 Sum_probs=53.2
Q ss_pred CEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHc
Q 012093 84 DQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY 163 (471)
Q Consensus 84 Gkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~ 163 (471)
|.+.++.|-+.- .+++.+.+--+.+++.|++.+|-..|-+ .++|..|..-.++.|..+.+.|++.
T Consensus 14 ~~~~~iaGPC~v---------Es~e~~~~~a~~~~~~g~~~~r~g~~kp------Rts~~sf~G~G~~gl~~L~~~~~~~ 78 (250)
T PRK13397 14 SKNNFIVGPCSI---------ESYDHIRLAASSAKKLGYNYFRGGAYKP------RTSAASFQGLGLQGIRYLHEVCQEF 78 (250)
T ss_pred CCCcEEeccCcc---------CCHHHHHHHHHHHHHcCCCEEEecccCC------CCCCcccCCCCHHHHHHHHHHHHHc
Confidence 334556676642 3467777777789999999999866632 1234445444456778888999999
Q ss_pred CCEEEEecCC
Q 012093 164 KIRLILSLTN 173 (471)
Q Consensus 164 Gi~vil~l~~ 173 (471)
||.++-+.++
T Consensus 79 Gl~~~Tev~d 88 (250)
T PRK13397 79 GLLSVSEIMS 88 (250)
T ss_pred CCCEEEeeCC
Confidence 9999999875
No 106
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.28 E-value=5.3 Score=38.39 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 174 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 174 (471)
+.+++-++.++++|+..||++.... +-........+...+.|.++.+.|+++||.+.++.++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 5667888999999999999853210 00000001123445678889999999999999997653
No 107
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=77.92 E-value=16 Score=37.38 Aligned_cols=90 Identities=14% Similarity=0.067 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCC
Q 012093 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 234 (471)
Q Consensus 155 ~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p 234 (471)
.++..|+++|++|++... .+ .....+++.++.|.+-+..++++ |.=+-
T Consensus 68 ~~~~~A~~~~v~v~~~~~--------~~----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfDG 115 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGD--------VP----------------LEQISNPTYRTQWIQQKVELAKS--------QFMDG 115 (358)
T ss_pred HHHHHHHHcCCEEEEECc--------cC----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCCe
Confidence 566899999999997521 01 01256888999898888888887 55444
Q ss_pred cEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 235 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 235 ~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
--+-||--+... ....+.+..+++++.+.+++..+...|++.
T Consensus 116 IdIDwE~p~~~~---~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 116 INIDIEQPITKG---SPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred EEEcccCCCCCC---cchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 455566433211 112467889999999999987777777764
No 108
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=77.92 E-value=4.9 Score=39.12 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++.++.++.+|+.+|+++....+ + .......-+...+.|.++.+.|+++||++.++.+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 356778889999999999999653211 1 0111111145567889999999999999999854
No 109
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=77.55 E-value=5.3 Score=40.83 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=40.4
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.+...+.|+.|++.|++.|=++.+. |+ .-.++.++++.+++++|+++||+||++..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~i--------pe--~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHI--------PE--DDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE-------------------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCc--------CC--CCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46789999999999999966555431 11 11256789999999999999999999974
No 110
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=77.02 E-value=5.8 Score=38.72 Aligned_cols=62 Identities=8% Similarity=0.203 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++.++.++.+|++.||++.+.. + ..+.+...-+...+.|+.+.+.|+++||++.++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 35678889999999999999853311 0 01111011145567889999999999999999865
No 111
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=76.58 E-value=43 Score=33.99 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=87.7
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHH--HHHHHHHHHcCCEEEEecCCCcCcC---CC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKAL--DFVISEAKKYKIRLILSLTNNWDAY---GG 180 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~l--D~~l~~a~~~Gi~vil~l~~~w~~~---gG 180 (471)
+.+.+++.++.+++.|+.+==++. |..|..- -..-.+|++.+-.. ..+++..++.|++|++-++..-... ..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMDR-RRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CcccccC-ccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 578899999999999998655543 2223110 00113455555555 7888999999999998874321110 01
Q ss_pred hhhhhhhhh------h-cCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 012093 181 KAQYVKWGK------A-AGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 246 (471)
Q Consensus 181 ~~~y~~W~~------~-~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~ 246 (471)
.+.|..-.. . .|.+. ...-.-|++|+.++.+.+.+++++.. ++- -..|.=+|||.
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~Gv---dg~w~D~~Ep~ 167 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ--------VPF---DGLWIDMNEPS 167 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc--------CCC---cEEEecCCCCc
Confidence 111211100 0 11110 01112478999999999999887764 322 23477789996
Q ss_pred CCCCCChhHH-HHHHHHHHHHhhccCCCCEEEec
Q 012093 247 CTSDPSGDTL-QSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 247 ~~~~~~g~~~-~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
..... ...+ ..+.+.+.+.+++....+++...
T Consensus 168 ~~~~~-hN~y~~~~~~~~~~~~~~~~~~r~~~~s 200 (339)
T cd06602 168 NFYDV-HNLYGLSEAIATYKALQSIPGKRPFVIS 200 (339)
T ss_pred hHhhh-cchhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 43100 1111 12445566777776335666553
No 112
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=76.27 E-value=6.8 Score=43.77 Aligned_cols=59 Identities=14% Similarity=0.287 Sum_probs=38.0
Q ss_pred HHHHHHhCCCCEEEEee-cc--CCC----------c--cc---cCCCCCCCCh-HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 113 LFHQASSAGLTVCRTWA-FN--DGQ----------W--RA---LQTSPSVYDE-EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 113 dl~~mk~~G~N~vR~~~-~~--~~~----------~--~~---~~~~~g~~~~-~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
-|+.+|++|+|+|=+.. |. +.. | .+ +.+. +.|.. ...+.|.++|+.|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 48999999999998843 21 100 1 00 0111 11210 1256788999999999999999974
No 113
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=76.14 E-value=7.2 Score=38.13 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++-++.++++|++.||++... .. ........-+...+.|.++.+.|+++||++.++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 3467889999999999999985321 00 00000011134567888999999999999999865
No 114
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=75.82 E-value=37 Score=34.11 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 202 FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 202 ~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
+.++++++.+.+++..++++ -|.|+-+- ++=+|+..+|.........+.+.++++++++.+|+..|+.+|.
T Consensus 140 ~~~~~W~~il~~rl~~l~~k--GfDGvfLD---~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 140 YWDPEWKAIAFSYLDRVIAQ--GFDGVYLD---LIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred cccHHHHHHHHHHHHHHHHc--CCCeEeec---cchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 44688999999998888776 44454222 4556777766553221123567788999999999999987654
No 115
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=75.10 E-value=6.8 Score=47.68 Aligned_cols=67 Identities=9% Similarity=0.078 Sum_probs=43.8
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccC---CCccccCC-CCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFND---GQWRALQT-SPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~---~~~~~~~~-~~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+-+.+.+.|+.++++|+|+|=+..+.. +....+.. .....|+ ...+.|.++++.|+++||+||+++.
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 467889999999999999997743211 11000000 0001122 1356788999999999999999984
No 116
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=74.64 E-value=15 Score=37.30 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=52.2
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 162 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 162 (471)
+++.+++.|-+. ..+++.+.+.-+.+|+.|.+++|...|-+. ++|..|..-..+.|..+.+.|++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKpR------Tsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKPR------TSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecCC------CCCcccccccHHHHHHHHHHHHH
Confidence 556667778653 235778888888999999999998766311 12222222224455566688999
Q ss_pred cCCEEEEecCC
Q 012093 163 YKIRLILSLTN 173 (471)
Q Consensus 163 ~Gi~vil~l~~ 173 (471)
.||.++-+.++
T Consensus 156 ~Gl~v~tev~d 166 (335)
T PRK08673 156 TGLPIVTEVMD 166 (335)
T ss_pred cCCcEEEeeCC
Confidence 99999999875
No 117
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=74.56 E-value=13 Score=39.32 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCcc-------ccC----------------------------CCCCCCChH
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ----------------------------TSPSVYDEE 148 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-------~~~----------------------------~~~g~~~~~ 148 (471)
..+.+.+.+.|+.|+..++|++-++.-.+..|+ .+. ...|.|..
T Consensus 18 f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~- 96 (445)
T cd06569 18 FHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSR- 96 (445)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCH-
Confidence 345789999999999999999998543333342 110 00134554
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC
Q 012093 149 VFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 149 ~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.+..+++.|+++||.||.++.
T Consensus 97 --~di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 97 --ADYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred --HHHHHHHHHHHHcCCEEEEccC
Confidence 4456778999999999999973
No 118
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=74.41 E-value=45 Score=33.46 Aligned_cols=113 Identities=16% Similarity=0.151 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhh
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGK 189 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~ 189 (471)
-.+-.+++|+.|+..||++-- ++ .+|.+..--||.|++.+.|. . ...
T Consensus 15 p~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v~vpN~--~------l~~--- 61 (310)
T PF00332_consen 15 PCKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMVGVPNE--D------LAS--- 61 (310)
T ss_dssp HHHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GG--G------HHH---
T ss_pred HHHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeeeccChH--H------HHH---
Confidence 345566778899999999521 22 33466667899999998642 1 000
Q ss_pred hcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhc
Q 012093 190 AAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKS 269 (471)
Q Consensus 190 ~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~ 269 (471)
+ ...+......++.-+.. |...-.|-...++||...... ...+..-++.+.+.+++
T Consensus 62 -----------l---a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~--~~~lvpAm~ni~~aL~~ 117 (310)
T PF00332_consen 62 -----------L---ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTD--NAYLVPAMQNIHNALTA 117 (310)
T ss_dssp -----------H---HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSG--GGGHHHHHHHHHHHHHH
T ss_pred -----------h---ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCcc--ceeeccHHHHHHHHHHh
Confidence 0 11223334455555554 666566888999999877532 11233333445555554
Q ss_pred --cCCCCEEEec
Q 012093 270 --IDAKHLVEIG 279 (471)
Q Consensus 270 --~Dp~~lV~~g 279 (471)
++..-.|+..
T Consensus 118 ~~L~~~IkVst~ 129 (310)
T PF00332_consen 118 AGLSDQIKVSTP 129 (310)
T ss_dssp TT-TTTSEEEEE
T ss_pred cCcCCcceeccc
Confidence 3334445544
No 119
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=73.83 E-value=23 Score=36.28 Aligned_cols=76 Identities=20% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 162 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 162 (471)
+|+++++.|-+.- .+.+.+.+.-+.+++.|++.+|-..|-+ .++|..|..-.++.+..+-+.|++
T Consensus 116 ~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~kp------Rtsp~~f~g~~~e~l~~L~~~~~~ 180 (360)
T PRK12595 116 DGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPYDFQGLGVEGLKILKQVADE 180 (360)
T ss_pred CCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccCC------CCCCccccCCCHHHHHHHHHHHHH
Confidence 5677778877632 2467777888889999999999754421 122333433335666777789999
Q ss_pred cCCEEEEecCC
Q 012093 163 YKIRLILSLTN 173 (471)
Q Consensus 163 ~Gi~vil~l~~ 173 (471)
.||.++-+.++
T Consensus 181 ~Gl~~~t~v~d 191 (360)
T PRK12595 181 YGLAVISEIVN 191 (360)
T ss_pred cCCCEEEeeCC
Confidence 99999999875
No 120
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=73.04 E-value=34 Score=33.28 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=52.6
Q ss_pred EEECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHH
Q 012093 80 FVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISE 159 (471)
Q Consensus 80 f~~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~ 159 (471)
+--++...++.|-+. ..+.+.+..--+..|+.|.+.+|--.|-. + ++|-.|.--..+.|..+-..
T Consensus 40 ~g~~~~~~viAGPCs---------vEs~E~i~~~A~~vk~~Ga~~lRGgafKP----R--TSPYsFQGlge~gL~~l~~a 104 (286)
T COG2876 40 IGEGRALRVIAGPCS---------VESEEQVRETAESVKAAGAKALRGGAFKP----R--TSPYSFQGLGEEGLKLLKRA 104 (286)
T ss_pred ecCCcceEEEecCcc---------cCCHHHHHHHHHHHHHcchhhccCCcCCC----C--CCcccccccCHHHHHHHHHH
Confidence 334455677777774 23577888888999999999999866521 1 11212212223566666789
Q ss_pred HHHcCCEEEEecCC
Q 012093 160 AKKYKIRLILSLTN 173 (471)
Q Consensus 160 a~~~Gi~vil~l~~ 173 (471)
++++|+.|+-+.-+
T Consensus 105 ~~~~Gl~vvtEvm~ 118 (286)
T COG2876 105 ADETGLPVVTEVMD 118 (286)
T ss_pred HHHcCCeeEEEecC
Confidence 99999999988753
No 121
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.94 E-value=7.6 Score=35.49 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.+.+++.++.++.+|+..++++......+... ....--+...+.|+++.+.|+++|+.+.++.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPED--DTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTS--SHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCC--CHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 46788999999999999999974310000000 000111456678899999999999999999653
No 122
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.85 E-value=46 Score=30.16 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccc---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
...++..+.+++.|+..+-+.......... ..+.+ . .+..++.+.+.++.|++.|.+.|......+....
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~-~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~----- 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSAND-E-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP----- 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSS-H-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSST-----
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcch-h-hHHHHHHHHHHHHHHHHhCCCceeecCccccccc-----
Confidence 467777888999999977775432221110 00111 1 3567899999999999999998776421000000
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHH
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 264 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~ 264 (471)
-....+..+.+.+.++.++++ .+.+...++.|......... ... ++++.
T Consensus 100 ----------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE~~~~~~~~~---~~~----~~~~~ 148 (213)
T PF01261_consen 100 ----------------EDDTEENWERLAENLRELAEI--------AEEYGVRIALENHPGPFSET---PFS----VEEIY 148 (213)
T ss_dssp ----------------TSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE-SSSSSSSE---ESS----HHHHH
T ss_pred ----------------CCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEecccCccccc---hhh----HHHHH
Confidence 012345666777777777776 55555555555444433321 111 36667
Q ss_pred HHhhccCCCC
Q 012093 265 VYVKSIDAKH 274 (471)
Q Consensus 265 ~~Ir~~Dp~~ 274 (471)
+.++++++..
T Consensus 149 ~~l~~~~~~~ 158 (213)
T PF01261_consen 149 RLLEEVDSPN 158 (213)
T ss_dssp HHHHHHTTTT
T ss_pred HHHhhcCCCc
Confidence 7777777544
No 123
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.74 E-value=38 Score=35.77 Aligned_cols=156 Identities=8% Similarity=0.083 Sum_probs=96.7
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCC--------------------------Ccccc---CCCCCCCChH----HHHH
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDG--------------------------QWRAL---QTSPSVYDEE----VFKA 152 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~--------------------------~~~~~---~~~~g~~~~~----~l~~ 152 (471)
.-+++++.|+.|+=+|+|.+=.+...+. .|.+. ..-.|...++ .+-.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 5689999999999999998877531110 02211 1111333222 1112
Q ss_pred HHHHHHHHHHcCCEEEEecCCCcCcCCChhh-------------hhhhhhhcCCCCCCCCCc---CCCHHHHHHHHHHHH
Q 012093 153 LDFVISEAKKYKIRLILSLTNNWDAYGGKAQ-------------YVKWGKAAGLNLTSDDEF---FSHTTLKSYYKAHVK 216 (471)
Q Consensus 153 lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~-------------y~~W~~~~G~~~~~~~~f---~~~~~~~~~~~~~~~ 216 (471)
=.++|+...+.||.+++..+. |..|. ...|..-... ..-.+ -.||-.++.-..+++
T Consensus 156 qkrIidrm~~lGmTpvLPaFa-----G~VP~al~rlfPesnf~rl~rWn~f~s~---~~C~l~v~P~dplF~eIgs~Flr 227 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFA-----GHVPDALERLFPESNFTRLPRWNNFTSR---YSCMLLVSPFDPLFQEIGSTFLR 227 (666)
T ss_pred HHHHHHHHHHcCCCccchhhc-----cccHHHHHHhCchhceeeccccCCCCcc---eeeeEEccCCcchHHHHHHHHHH
Confidence 257899999999999998653 11111 1112110000 00011 135667777788999
Q ss_pred HHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEe
Q 012093 217 TVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 217 ~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
++++. |+.-..|..-+..||...... .++-+..-...+++..|+.|++..-..
T Consensus 228 ~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 228 HQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEee
Confidence 99998 998888999999999876542 234445555677888899999976444
No 124
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=71.90 E-value=12 Score=39.65 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCC--CccccCCCC-CCCC--hHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTSP-SVYD--EEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~--~~~~~~~~~-g~~~--~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+-.-+.+-|+.++.+|+++|=+..+... .+..+.... -..+ ...++.++.+++.|+++||+||+++.
T Consensus 27 dl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 27 DLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred cHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4556678999999999999977543211 111110000 0111 12356778899999999999999984
No 125
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.80 E-value=8.6 Score=37.58 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++.++.++++|+..|++..+.. + ........-+...+.|..+.+.|+++|+.+.++.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDV--Y--YEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccc--c--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 34678889999999999999853210 0 10000001123466788999999999999999865
No 126
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.38 E-value=35 Score=36.66 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=56.5
Q ss_pred ECCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCC-cc--ccCCCCCCCChHHHHHHHHHHH
Q 012093 82 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQ-WR--ALQTSPSVYDEEVFKALDFVIS 158 (471)
Q Consensus 82 ~nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~-~~--~~~~~~g~~~~~~l~~lD~~l~ 158 (471)
..|+.-++-||=-. +.| +|++.++-..-|+.++++|+| +..|.... +. .+. ..-|+-+..+.|..+|+
T Consensus 11 A~g~r~fiCGVvEG---FYG-RPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~W--RElY~vEEa~~L~~Li~ 81 (891)
T KOG3698|consen 11 AVGNRKFICGVVEG---FYG-RPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLW--RELYNVEEATYLRNLIE 81 (891)
T ss_pred ccccceeEEEeecc---ccC-CCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHH--HHHhhhHHHHHHHHHHH
Confidence 56677778887632 223 478888889999999999999 34443211 10 000 01366677788999999
Q ss_pred HHHHcCCEEEEecC
Q 012093 159 EAKKYKIRLILSLT 172 (471)
Q Consensus 159 ~a~~~Gi~vil~l~ 172 (471)
+|+++||..+-.+.
T Consensus 82 aAke~~i~F~YAiS 95 (891)
T KOG3698|consen 82 AAKENNINFVYAIS 95 (891)
T ss_pred HHHhcCceEEEEcC
Confidence 99999999987764
No 127
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=70.97 E-value=10 Score=42.20 Aligned_cols=107 Identities=13% Similarity=0.194 Sum_probs=60.1
Q ss_pred HHHHHhCCCCEEEEee---ccCC----------Cc--cc---cCCCCCCCC-----hHHHHHHHHHHHHHHHcCCEEEEe
Q 012093 114 FHQASSAGLTVCRTWA---FNDG----------QW--RA---LQTSPSVYD-----EEVFKALDFVISEAKKYKIRLILS 170 (471)
Q Consensus 114 l~~mk~~G~N~vR~~~---~~~~----------~~--~~---~~~~~g~~~-----~~~l~~lD~~l~~a~~~Gi~vil~ 170 (471)
|+.+|++|+++|.+-. |.+. -| .+ +.|. |.|. .....-|..+|.++.++||.||++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999999932 1110 02 11 1222 2332 246788899999999999999999
Q ss_pred cC-CCcCcCCC-hhhhh---------hhhhhcCCCC---CCCCCcC-CCHHHHHHHHHHHHHHHhc
Q 012093 171 LT-NNWDAYGG-KAQYV---------KWGKAAGLNL---TSDDEFF-SHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 171 l~-~~w~~~gG-~~~y~---------~W~~~~G~~~---~~~~~f~-~~~~~~~~~~~~~~~lv~R 221 (471)
+. |+-.+... .+.+. -|....|... +..+..- ++|..++...+-++..|+.
T Consensus 285 VVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 285 VVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred EeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHH
Confidence 73 43211100 01000 0111111110 0111222 3488889999999988887
No 128
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=70.82 E-value=11 Score=36.31 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 174 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 174 (471)
+.+++-++.++++|+..|++.... .+. ...+...-+...+.|.++.+.|+++|+++.++.+|+
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK---TPA-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---CCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 457888999999999999984211 000 000011113445777899999999999999997653
No 129
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=70.37 E-value=34 Score=29.63 Aligned_cols=86 Identities=15% Similarity=0.223 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 012093 147 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 226 (471)
Q Consensus 147 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~t 226 (471)
...++-|.-+|+.|++.|+.|++-+. |.-..|..-.| -+.+.++.+.+.++.++++
T Consensus 32 SpEy~Dl~l~L~~~k~~g~~~lfVi~---------PvNg~wydytG----------~~~~~r~~~y~kI~~~~~~----- 87 (130)
T PF04914_consen 32 SPEYDDLQLLLDVCKELGIDVLFVIQ---------PVNGKWYDYTG----------LSKEMRQEYYKKIKYQLKS----- 87 (130)
T ss_dssp -THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT-----
T ss_pred CccHHHHHHHHHHHHHcCCceEEEec---------CCcHHHHHHhC----------CCHHHHHHHHHHHHHHHHH-----
Confidence 44567788899999999999988764 12234654333 2578889999999999998
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChhHHHHHH
Q 012093 227 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWI 260 (471)
Q Consensus 227 g~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~ 260 (471)
++= ..+=..+=.+||....+...-...-|+
T Consensus 88 ---~gf-~v~D~s~~~y~~yfm~D~iHlgw~GWv 117 (130)
T PF04914_consen 88 ---QGF-NVADFSDDEYEPYFMQDTIHLGWKGWV 117 (130)
T ss_dssp ---TT---EEE-TTGTTSTTSBSSSSSB-THHHH
T ss_pred ---CCC-EEEecccCCCCCceeeecccCchhhHH
Confidence 443 222222235666665544333344453
No 130
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=69.62 E-value=17 Score=39.83 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=44.8
Q ss_pred EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 87 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 87 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..+||.|.. |......+.++..++.+++.|+.++|++-..+ .++.+...++.+++.|+.
T Consensus 80 mL~Rg~N~v-----Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLL-----GYRNYADDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEecccccc-----ccccCChHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 467888863 33334467889999999999999999964321 134555667777778877
Q ss_pred EEEec
Q 012093 167 LILSL 171 (471)
Q Consensus 167 vil~l 171 (471)
+...+
T Consensus 139 ~~~~i 143 (596)
T PRK14042 139 AQGAI 143 (596)
T ss_pred EEEEE
Confidence 76553
No 131
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=69.41 E-value=64 Score=31.02 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 012093 151 KALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 230 (471)
Q Consensus 151 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~y 230 (471)
..++.++..|+++|++|++.+.. |.. +. ......+++.++.+.+-+..++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~~----~~--------------~~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GSP----PE--------------FTAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CCC----Cc--------------chhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 35667789999999999998742 211 00 011356888888888888888887 6
Q ss_pred CCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEecc
Q 012093 231 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 231 k~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
.=+---+-||-.... .+.+..+++++.+.+++. +.++++..
T Consensus 99 ~~DGIdiDwE~~~~~-------~~~~~~fv~~Lr~~l~~~--~~~lt~av 139 (253)
T cd06545 99 NLDGIDVDLEGPDVT-------FGDYLVFIRALYAALKKE--GKLLTAAV 139 (253)
T ss_pred CCCceeEEeeccCcc-------HhHHHHHHHHHHHHHhhc--CcEEEEEc
Confidence 555455556543211 357778888888888764 34566543
No 132
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=68.52 E-value=15 Score=35.85 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++-++.++++|++.|+++.... +. .+ ....-+...+.+.++++.|+++||++.++.+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~---~~-~~-~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSY---LG-QS-KEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC---CC-CC-HHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 45688899999999999999854311 10 00 0011145567889999999999999999864
No 133
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=68.45 E-value=86 Score=30.04 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 012093 150 FKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 229 (471)
Q Consensus 150 l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~ 229 (471)
++.....+..+++.|+||++.+.. |....+. ....+++.++.|.+-+..++++
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~~~~~------------------~~~~~~~~~~~fa~~l~~~v~~-------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHLGAGF------------------ANNLSDAAAKAYAKAIVDTVDK-------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCCCCCc------------------cccCCHHHHHHHHHHHHHHHHH--------
Confidence 344556678889999999999842 2111000 0134567778888888888877
Q ss_pred cCCCCcEEEEEeecCCCCCC-CCChhHHHHHHHHHHHHhhccCC-CCEEEecc
Q 012093 230 YKNDPTIFAWELMNEPRCTS-DPSGDTLQSWIQEMAVYVKSIDA-KHLVEIGL 280 (471)
Q Consensus 230 yk~~p~I~~wel~NEp~~~~-~~~g~~~~~w~~~~~~~Ir~~Dp-~~lV~~g~ 280 (471)
|+=+---+-||-.+...... ......+..+++++.+.+ +| +.++++..
T Consensus 103 yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~~ 152 (255)
T cd06542 103 YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTIDG 152 (255)
T ss_pred hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEEe
Confidence 66555556676655321110 112345555555555544 44 66777643
No 134
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=68.15 E-value=11 Score=45.10 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCEEEEee-ccCCC--------------ccc---cCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 112 ELFHQASSAGLTVCRTWA-FNDGQ--------------WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 112 ~dl~~mk~~G~N~vR~~~-~~~~~--------------~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.|+.+|++|+|+|=+.. |.... |.. +.+.| .|.....+.|..+|+.|+++||+||+++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp-~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDP-RLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcCh-hhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 557799999999998843 21100 110 01111 22212456788999999999999999973
No 135
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=66.00 E-value=88 Score=30.38 Aligned_cols=126 Identities=11% Similarity=0.147 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~ 186 (471)
.....+.-+.+++.|+...-+........+...+.+ ..-++.++.+.+.++.|.+.|..+|.. +. +...+
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~-~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~------~~~~~-- 120 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDK-AVRQQGLEIMEKAIQLARDLGIRTIQL-AG------YDVYY-- 120 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCH-HHHHHHHHHHHHHHHHHHHhCCCEEEe-cC------ccccc--
Confidence 456667777889999988776432110000000111 112356788999999999999998753 21 00000
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHH
Q 012093 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 266 (471)
Q Consensus 187 W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~ 266 (471)
+ -.+++..+.+.+.++++++. -+.+-..++.|..+.+... .. .++.+.
T Consensus 121 -----~---------~~~~~~~~~~~~~l~~l~~~--------A~~~Gv~l~lE~~~~~~~~------t~----~~~~~l 168 (279)
T TIGR00542 121 -----E---------EHDEETRRRFREGLKEAVEL--------AARAQVTLAVEIMDTPFMS------SI----SKWLKW 168 (279)
T ss_pred -----C---------cCCHHHHHHHHHHHHHHHHH--------HHHcCCEEEEeeCCCchhc------CH----HHHHHH
Confidence 0 11355567778888888887 6666677888865443221 12 344556
Q ss_pred hhccCCCC
Q 012093 267 VKSIDAKH 274 (471)
Q Consensus 267 Ir~~Dp~~ 274 (471)
|+.++..+
T Consensus 169 i~~v~~~~ 176 (279)
T TIGR00542 169 DHYLNSPW 176 (279)
T ss_pred HHHcCCCc
Confidence 67666433
No 136
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=65.32 E-value=1.5e+02 Score=29.59 Aligned_cols=159 Identities=13% Similarity=0.106 Sum_probs=85.2
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCc-cccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQW-RALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~-~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
+.+++++.++.+++.|+.+==+++ |..| ....-..-.+|.+.+-....+++.++++|++|++.++..-. . +.+.|
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~-~-~~~~y 97 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQ--DWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG-P-ETENY 97 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--echhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC-C-CChhH
Confidence 578899999999999887644433 2111 00000011346666677788899999999999987643211 0 11122
Q ss_pred hhhhhh-------cCCC------CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCC
Q 012093 185 VKWGKA-------AGLN------LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP 251 (471)
Q Consensus 185 ~~W~~~-------~G~~------~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~ 251 (471)
..-... .|.. ....---+++|+.++.+.+.+++.+.. + ..-..|-=+|||......
T Consensus 98 ~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~---Gvdg~w~D~~Ep~~~~~~ 166 (319)
T cd06591 98 KEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD--------K---GVDAWWLDAAEPEYSVYD 166 (319)
T ss_pred HHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc--------C---CCcEEEecCCCCCccCCc
Confidence 211110 0100 001122377899999888777654432 2 223347778887643110
Q ss_pred -----------ChhHH-----HHHHHHHHHHhhccCC-CCEEEec
Q 012093 252 -----------SGDTL-----QSWIQEMAVYVKSIDA-KHLVEIG 279 (471)
Q Consensus 252 -----------~g~~~-----~~w~~~~~~~Ir~~Dp-~~lV~~g 279 (471)
++..+ ..+.+.+++.+++..| .+++++.
T Consensus 167 ~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~s 211 (319)
T cd06591 167 FGLDNYRYHLGPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILT 211 (319)
T ss_pred ccccCcccCCCCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 11111 1244556677776654 5666543
No 137
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=65.29 E-value=21 Score=41.95 Aligned_cols=150 Identities=18% Similarity=0.261 Sum_probs=78.8
Q ss_pred chhHHHHHHHHHHhCCCCEEEEee-cc----C-----------------CCcc--c---cCCCCCCCCh------HHHHH
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWA-FN----D-----------------GQWR--A---LQTSPSVYDE------EVFKA 152 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~-~~----~-----------------~~~~--~---~~~~~g~~~~------~~l~~ 152 (471)
+-..+.+.|+.+|++|+|+|=+.. |. + ..|. + +.+. +.|.. ...+-
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAE 556 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHH
Confidence 344566779999999999999843 21 0 0021 0 0111 22211 12567
Q ss_pred HHHHHHHHHHcCCEEEEecC-CCcCcCC---C-hhhhhhhhhhcCCCCC--CCCC-cCCCHHHHHHHHHHHHHHHhcccc
Q 012093 153 LDFVISEAKKYKIRLILSLT-NNWDAYG---G-KAQYVKWGKAAGLNLT--SDDE-FFSHTTLKSYYKAHVKTVLNRVNT 224 (471)
Q Consensus 153 lD~~l~~a~~~Gi~vil~l~-~~w~~~g---G-~~~y~~W~~~~G~~~~--~~~~-f~~~~~~~~~~~~~~~~lv~R~N~ 224 (471)
|.++|+.|+++||+||+++. ||-...+ + .+.|-.+....|.+.. .... -..++.+++.+.+.++..++.
T Consensus 557 fK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e--- 633 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE--- 633 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh---
Confidence 88999999999999999974 3211100 0 0111001111111100 0011 124578888888888888876
Q ss_pred ccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEE
Q 012093 225 FTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 276 (471)
Q Consensus 225 ~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV 276 (471)
|+=+- +-++++.... ..++.++...+++++|+..+
T Consensus 634 -----y~VDG--FRfDl~g~~d----------~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 634 -----FKVDG--FRFDMMGDHD----------AASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred -----cCCcE--EEEeccccCC----------HHHHHHHHHHHHHhCcCEEE
Confidence 54322 2355553211 12335566667788886543
No 138
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=62.74 E-value=60 Score=32.49 Aligned_cols=99 Identities=14% Similarity=0.303 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHc-CCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 012093 152 ALDFVISEAKKY-KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 230 (471)
Q Consensus 152 ~lD~~l~~a~~~-Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~y 230 (471)
.+.++..+.+++ |++|++.+. .|.... . + ..+..+++.++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svg-g~~~s~---~---f-----------~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIG-GWTESD---N---F-----------SSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEe-CCCCCc---c---h-----------hHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455566677775 999999884 232211 0 1 12456788899998888888887 5
Q ss_pred CCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhcc---CCCCEEEecc
Q 012093 231 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI---DAKHLVEIGL 280 (471)
Q Consensus 231 k~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~---Dp~~lV~~g~ 280 (471)
+=+--.+-||-. .... .....+..+++++.+.+++. .++..|++..
T Consensus 107 ~~DGidiDwE~~---~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEYP---GARG-DDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcCC---CCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 444434445432 2110 12457888888888888765 4566777653
No 139
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=62.52 E-value=1.9e+02 Score=29.71 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCCCceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC-CCCChHHHHHHHHHHHHHH
Q 012093 312 QTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD-TGYNTSFRDTLISSVYKTL 390 (471)
Q Consensus 312 ~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~-~g~s~~~r~~y~~~~~~~i 390 (471)
....+||+.+.+|-......... .+......|++-....+.+ .+.-+++|==|+.... .|+-.. ....++++..+
T Consensus 204 ~~~~fDf~~IQFYNN~~CS~SsG-~~Q~~fDsW~~ya~~~a~n-Kn~~lFLGLPg~~~AAGSGYIsp--~~Lt~~~l~~~ 279 (568)
T KOG4701|consen 204 SENSFDFLSIQFYNNSTCSGSSG-SRQSTFDAWVEYAEDSAYN-KNTSLFLGLPGHQNAAGSGYISP--KNLTRDLLNYK 279 (568)
T ss_pred hccccceEEEEeecCCCcccccC-cccccHHHHHHHHhhhccc-ccceEEeeccCCcccccCCccCc--hHHHHHHHHhh
Confidence 34678999999996432211100 0111123354322222222 3445888877766543 233111 23344444444
Q ss_pred HHhhhcCCCccceeecccC
Q 012093 391 LNSTKKGGSGAGSLLWQLF 409 (471)
Q Consensus 391 ~~~~~~~~~~~G~~~W~~~ 409 (471)
.++ ....|.+.|+-.
T Consensus 280 a~S----~~fGGv~LWd~s 294 (568)
T KOG4701|consen 280 ANS----TLFGGVTLWDTS 294 (568)
T ss_pred hhc----cccccEEEeech
Confidence 333 346789999863
No 140
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=62.37 E-value=1.1e+02 Score=29.68 Aligned_cols=124 Identities=13% Similarity=0.166 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhh
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~ 186 (471)
.+.+++--+.+++.|+.+.=+........+...+.+ ...++.++.+.+.++.|.+.|...|.. +. + ..
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~-~~--- 123 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDD-AVRAQALEIMRKAIQLAQDLGIRVIQL-AG------Y-DV--- 123 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEecccccccCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------c-cc---
Confidence 556667777888999988765321100000000000 112456788999999999999998763 21 0 00
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHH
Q 012093 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 266 (471)
Q Consensus 187 W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~ 266 (471)
|. + ...++..+.+.+.++.++++ -+.+...+++|..+.+... . ..++.+.
T Consensus 124 ~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~~~~~~------~----~~~~~~l 173 (283)
T PRK13209 124 YY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMDTPFMN------S----ISKALGY 173 (283)
T ss_pred cc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecCCcccC------C----HHHHHHH
Confidence 00 0 12355667777888888886 5666677778776433221 1 1355666
Q ss_pred hhccCC
Q 012093 267 VKSIDA 272 (471)
Q Consensus 267 Ir~~Dp 272 (471)
|++++.
T Consensus 174 l~~v~~ 179 (283)
T PRK13209 174 AHYLNS 179 (283)
T ss_pred HHHhCC
Confidence 666653
No 141
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=62.35 E-value=49 Score=32.90 Aligned_cols=95 Identities=13% Similarity=0.198 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCC
Q 012093 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 234 (471)
Q Consensus 155 ~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p 234 (471)
+++..|+++|++|++.+.+ |.. ++... .. -..+..+++.++.|.+-+..++++ |+=+-
T Consensus 49 ~~~~~a~~~~~kv~~~i~~-~~~-~~~~~-~~-----------~~~~l~~~~~r~~fi~~iv~~l~~--------~~~DG 106 (313)
T cd02874 49 RLIEAAKRRGVKPLLVITN-LTN-GNFDS-EL-----------AHAVLSNPEARQRLINNILALAKK--------YGYDG 106 (313)
T ss_pred HHHHHHHHCCCeEEEEEec-CCC-CCCCH-HH-----------HHHHhcCHHHHHHHHHHHHHHHHH--------hCCCc
Confidence 5779999999999999853 331 11110 00 123567889999998888888887 65555
Q ss_pred cEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 235 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 235 ~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
-.+-||-.. . .....+..+++++.+.+++. +.++++.
T Consensus 107 idiDwE~~~---~---~d~~~~~~fl~~lr~~l~~~--~~~lsv~ 143 (313)
T cd02874 107 VNIDFENVP---P---EDREAYTQFLRELSDRLHPA--GYTLSTA 143 (313)
T ss_pred EEEecccCC---H---HHHHHHHHHHHHHHHHhhhc--CcEEEEE
Confidence 555565321 1 12467888888988888754 3455543
No 142
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=62.10 E-value=1.4e+02 Score=29.97 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=88.7
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
.+.+.+++.++.+++.++.+==+++ |..|..- ...-.+|++.+.....+++..++.|++|++-++..-......+.|
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~ 97 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFL--DIHYMDS-YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPF 97 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEE--ChhhhCC-CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHH
Confidence 3578899999999999998766654 2222110 001145666666677889999999999998764321100000111
Q ss_pred hhh------hhh-cCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC
Q 012093 185 VKW------GKA-AGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD 250 (471)
Q Consensus 185 ~~W------~~~-~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~ 250 (471)
..= .+. .|.+. ...---+++|+.++.+.+.++.+... .+ .-..|.=+|||.....
T Consensus 98 ~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~g---vdg~w~D~~Ep~~~~~ 166 (317)
T cd06600 98 LSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QG---VDGIWLDMNEPSDFEK 166 (317)
T ss_pred HHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CC---CceEEeeCCCCccHHH
Confidence 100 000 11110 01112478999999999999887643 22 2234667899864311
Q ss_pred CChhHH-HHHHHHHHHHhhccCC-CCEEEec
Q 012093 251 PSGDTL-QSWIQEMAVYVKSIDA-KHLVEIG 279 (471)
Q Consensus 251 ~~g~~~-~~w~~~~~~~Ir~~Dp-~~lV~~g 279 (471)
. ...+ ..+.+...+.+++..| .+++++.
T Consensus 167 ~-hn~y~~~~~~a~~~~~~~~~~~~r~~~~s 196 (317)
T cd06600 167 V-HNLYGLYEAMATAEGFRTSHPRNRIFILT 196 (317)
T ss_pred h-cchhhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 0 0111 1244556677777665 4566554
No 143
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=61.51 E-value=2.1e+02 Score=31.95 Aligned_cols=125 Identities=8% Similarity=0.113 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCC----ccc-cCC---CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCc
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQ----WRA-LQT---SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDA 177 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~----~~~-~~~---~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~ 177 (471)
.+.+..-|+.++++|+|+|=+-+|.+.. |+. +.| -|+. ...|.++-. .++.++|++|-.=+.-. +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw--~l~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAW--QLRTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHH--HHHHhhCCEEEEeccceeecc
Confidence 4678889999999999999887765321 211 111 1221 122223222 55999999985433110 100
Q ss_pred CCChhhhhhhhhhcCCCCCCCCCc-----CCCHHHHHHHHHHHHHHHhccccccccccCCCCcEE
Q 012093 178 YGGKAQYVKWGKAAGLNLTSDDEF-----FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF 237 (471)
Q Consensus 178 ~gG~~~y~~W~~~~G~~~~~~~~f-----~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~ 237 (471)
.-..+.-..+. ..+.+...+.++ --+|+.++...+..+.++++ .++-|+.|-|+..+-
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~ 471 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLS 471 (671)
T ss_pred CCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEeccccccc
Confidence 00000000010 001111111111 12689999999999999986 567888887775443
No 144
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=61.48 E-value=1.2e+02 Score=29.11 Aligned_cols=132 Identities=7% Similarity=0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCcc-ccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhh
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWR-ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~-~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~ 186 (471)
..+++--+.+++.|+.++=+..... .++ .+...+...-++.++.+++.++.|.+.|...|+.... ..+.
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~----~~~~----- 116 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETN-GYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA----HAGY----- 116 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCccc-CcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC----CCCC-----
Confidence 3455555577799998765432111 111 0100011122467889999999999999998865210 0000
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHH
Q 012093 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 266 (471)
Q Consensus 187 W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~ 266 (471)
..+..+..+.+.+.++.++.. -+.+.-.++.|..+....... .. ..++.+.
T Consensus 117 --------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~~---~t----~~~~~~l 167 (275)
T PRK09856 117 --------------LTPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNVV---CN----ANDVLHA 167 (275)
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCccccc---CC----HHHHHHH
Confidence 012334556667777777775 455555677775543221110 11 2566777
Q ss_pred hhccC-CCCEEEe
Q 012093 267 VKSID-AKHLVEI 278 (471)
Q Consensus 267 Ir~~D-p~~lV~~ 278 (471)
+++++ |+.-+..
T Consensus 168 ~~~~~~~~v~~~~ 180 (275)
T PRK09856 168 LALVPSPRLFSMV 180 (275)
T ss_pred HHHcCCCcceeEE
Confidence 78776 4544444
No 145
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=58.38 E-value=46 Score=35.13 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=44.3
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccC----C---CCCCCChHH---HHHHHHHHHHHHHcCCEEEEecC
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ----T---SPSVYDEEV---FKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~----~---~~g~~~~~~---l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.-..+.+-|+.|+..-+|++-.++..+...| ++ | ..|.|+... -+..-++|+-|+-+||+|+.++.
T Consensus 196 pv~~IkrtLeaMa~nKLNVlHWHivDs~SFP-le~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 196 PVKVIKRTLEAMAANKLNVLHWHIVDSQSFP-LESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred cHHHHHHHHHHHHhhhhceeEEEeecCCCCc-cccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 3578899999999999999997554322211 11 1 125554321 13344788999999999999974
No 146
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.02 E-value=41 Score=35.58 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=44.2
Q ss_pred EEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 012093 89 VNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLI 168 (471)
Q Consensus 89 ~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vi 168 (471)
.+|.|.. |......+.++++++.+.+.|+..||++...+. .+.+...++.|+++|+.+.
T Consensus 82 ~r~~N~~-----G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd----------------~~n~~~~v~~ak~~G~~v~ 140 (448)
T PRK12331 82 LRGQNLL-----GYRNYADDVVESFVQKSVENGIDIIRIFDALND----------------VRNLETAVKATKKAGGHAQ 140 (448)
T ss_pred ecccccc-----ccccCchhhHHHHHHHHHHCCCCEEEEEEecCc----------------HHHHHHHHHHHHHcCCeEE
Confidence 6777752 222223567889999999999999999753211 1357778999999999976
Q ss_pred Eec
Q 012093 169 LSL 171 (471)
Q Consensus 169 l~l 171 (471)
..+
T Consensus 141 ~~i 143 (448)
T PRK12331 141 VAI 143 (448)
T ss_pred EEE
Confidence 654
No 147
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=57.89 E-value=28 Score=35.88 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=47.4
Q ss_pred EEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 88 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 88 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.+||.|.- |++-...+.+++-++...++|+.++|++---+ ..+.|...++.++++|..+
T Consensus 83 LlRGQNlv-----GYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlN----------------D~RNl~~ai~a~kk~G~h~ 141 (472)
T COG5016 83 LLRGQNLV-----GYRHYADDVVEKFVEKAAENGIDVFRIFDALN----------------DVRNLKTAIKAAKKHGAHV 141 (472)
T ss_pred HHccCccc-----cccCCchHHHHHHHHHHHhcCCcEEEechhcc----------------chhHHHHHHHHHHhcCcee
Confidence 57888853 33334467889999999999999999963111 1356778889999999999
Q ss_pred EEec
Q 012093 168 ILSL 171 (471)
Q Consensus 168 il~l 171 (471)
..++
T Consensus 142 q~~i 145 (472)
T COG5016 142 QGTI 145 (472)
T ss_pred EEEE
Confidence 8776
No 148
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=57.51 E-value=42 Score=35.66 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=45.8
Q ss_pred EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 87 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 87 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..++|.|.. |......+.++.-++.+++.|+.++|++-..+ ..+.+...++.+++.|..
T Consensus 89 mLlRG~n~v-----gy~~ypddvv~~fv~~a~~~Gidi~Rifd~ln----------------d~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 89 MLLRGQNLL-----GYRHYADDIVDKFISLSAQNGIDVFRIFDALN----------------DPRNIQQALRAVKKTGKE 147 (468)
T ss_pred eeecccccc-----CccCCcchHHHHHHHHHHHCCCCEEEEcccCC----------------CHHHHHHHHHHHHHcCCE
Confidence 457788842 22222346777889999999999999964211 256677888999999999
Q ss_pred EEEec
Q 012093 167 LILSL 171 (471)
Q Consensus 167 vil~l 171 (471)
+.+.+
T Consensus 148 ~~~~i 152 (468)
T PRK12581 148 AQLCI 152 (468)
T ss_pred EEEEE
Confidence 77655
No 149
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=56.64 E-value=52 Score=32.07 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=51.2
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 162 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 162 (471)
+|+++++.|-+. ..+.+.+.+..+.+++.|.+..|-..|-+ + ++|..|..-..+.|..+-+.|++
T Consensus 23 ~~~~~~IAGpc~---------ie~~~~~~~~A~~lk~~~~k~~r~~~~Kp----R--tsp~s~~g~g~~gl~~l~~~~~~ 87 (260)
T TIGR01361 23 EGSPIVIAGPCS---------VESEEQIMETARFVKEAGAKILRGGAFKP----R--TSPYSFQGLGEEGLKLLRRAADE 87 (260)
T ss_pred CCcEEEEEeCCc---------cCCHHHHHHHHHHHHHHHHHhccCceecC----C--CCCccccccHHHHHHHHHHHHHH
Confidence 567778888663 23466777788888889999888654421 1 12222332235566667788999
Q ss_pred cCCEEEEecCC
Q 012093 163 YKIRLILSLTN 173 (471)
Q Consensus 163 ~Gi~vil~l~~ 173 (471)
.||.++-+.++
T Consensus 88 ~Gl~~~t~~~d 98 (260)
T TIGR01361 88 HGLPVVTEVMD 98 (260)
T ss_pred hCCCEEEeeCC
Confidence 99999999875
No 150
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=55.96 E-value=46 Score=35.69 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=47.7
Q ss_pred EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 87 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 87 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..+||.|.. |......+.++.+++..++.|+..+|++...+ .++.+...++.+++.|..
T Consensus 81 mL~Rg~N~v-----Gy~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln----------------dv~nl~~ai~~vk~ag~~ 139 (499)
T PRK12330 81 MLLRGQNLL-----GYRHYEDEVVDRFVEKSAENGMDVFRVFDALN----------------DPRNLEHAMKAVKKVGKH 139 (499)
T ss_pred EEEcccccC-----CccCcchhHHHHHHHHHHHcCCCEEEEEecCC----------------hHHHHHHHHHHHHHhCCe
Confidence 467888853 33334467889999999999999999964211 147778889999999998
Q ss_pred EEEec
Q 012093 167 LILSL 171 (471)
Q Consensus 167 vil~l 171 (471)
+...+
T Consensus 140 ~~~~i 144 (499)
T PRK12330 140 AQGTI 144 (499)
T ss_pred EEEEE
Confidence 85554
No 151
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.78 E-value=1.4e+02 Score=30.52 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=51.1
Q ss_pred CCEE-EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHH
Q 012093 83 NDQP-FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAK 161 (471)
Q Consensus 83 nGkp-~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~ 161 (471)
++++ +.+.|-+. ..+++.+.+.-+.+|+.|++.+|-..|-+. ++|..|..-.-+.|+.+-+.++
T Consensus 98 g~~~l~vIAGPCs---------IEs~eq~l~~A~~lk~~g~~~~r~g~~kpR------tsp~sf~G~g~~gl~~L~~~~~ 162 (352)
T PRK13396 98 ENHPVVVVAGPCS---------VENEEMIVETAKRVKAAGAKFLRGGAYKPR------TSPYAFQGHGESALELLAAARE 162 (352)
T ss_pred CCCeEEEEEeCCc---------ccCHHHHHHHHHHHHHcCCCEEEeeeecCC------CCCcccCCchHHHHHHHHHHHH
Confidence 4554 67888653 235778888888999999999997555211 2232332222445555568899
Q ss_pred HcCCEEEEecCC
Q 012093 162 KYKIRLILSLTN 173 (471)
Q Consensus 162 ~~Gi~vil~l~~ 173 (471)
+.||.++-+.++
T Consensus 163 e~Gl~~~tev~d 174 (352)
T PRK13396 163 ATGLGIITEVMD 174 (352)
T ss_pred HcCCcEEEeeCC
Confidence 999999999874
No 152
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=54.61 E-value=25 Score=38.94 Aligned_cols=64 Identities=14% Similarity=0.259 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHhCCCCEEEEee---cc----CCCccc---cCCCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 107 RGKVSELFHQASSAGLTVCRTWA---FN----DGQWRA---LQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~---~~----~~~~~~---~~~~~g~~~----~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+-.+++|..+|.+|.|+|-+-. |. ..+|.. +.|. +.|- +.-..-|..+|+.|...||-|+|+.
T Consensus 254 ~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 254 LGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 45567779999999999999943 21 111211 1111 1110 1124567789999999999999997
No 153
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=52.87 E-value=36 Score=37.46 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCEEEEeec-cCCC-ccc-cCCC-CCCCC-------h--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 112 ELFHQASSAGLTVCRTWAF-NDGQ-WRA-LQTS-PSVYD-------E--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 112 ~dl~~mk~~G~N~vR~~~~-~~~~-~~~-~~~~-~g~~~-------~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.-.+.++++|+++|=+..+ ..+. |.. +-|. .+.|| + ..++.++++++.|+++||+||++|.
T Consensus 78 ~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 78 ALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred HHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4566788999999887543 2211 100 0011 12332 2 2356788999999999999999985
No 154
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=52.75 E-value=52 Score=36.17 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=40.9
Q ss_pred EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 87 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 87 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..++|.|.. |+.....+.++.+++.+++.|+..+|++...+ + ++.+...++.|+++|+.
T Consensus 81 ml~Rg~n~v-----g~~~ypddvv~~~v~~a~~~Gid~~rifd~ln--------------d--~~~~~~ai~~ak~~G~~ 139 (593)
T PRK14040 81 MLLRGQNLL-----GYRHYADDVVERFVERAVKNGMDVFRVFDAMN--------------D--PRNLETALKAVRKVGAH 139 (593)
T ss_pred EEecCccee-----ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCC--------------c--HHHHHHHHHHHHHcCCe
Confidence 356777753 22122346788999999999999999974211 1 35666777788888876
Q ss_pred EE
Q 012093 167 LI 168 (471)
Q Consensus 167 vi 168 (471)
+.
T Consensus 140 ~~ 141 (593)
T PRK14040 140 AQ 141 (593)
T ss_pred EE
Confidence 53
No 155
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=50.98 E-value=2.4e+02 Score=27.29 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+.+.+.++.+++.|+.+==++. |..|..- ...- .+|++.+.....+++..+++|++|++-++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l--D~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVL--DDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEE--CcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 4678899999999999998554433 2223210 0111 45666677778899999999999998753
No 156
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.96 E-value=58 Score=31.92 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+..+.|++...+.|+..||++... ..++.+-..++.|+++|+.|...+
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~----------------~~~~~~~~~i~~ak~~G~~v~~~i 138 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDAL----------------NDVRNLEVAIKAVKKAGKHVEGAI 138 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecC----------------ChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999999999999996421 115777788999999999988755
No 157
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=50.16 E-value=1.3e+02 Score=28.89 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccc
Q 012093 146 DEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 225 (471)
Q Consensus 146 ~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~ 225 (471)
.+.+++-+.+.+.+|.+.||+.|--. |.+.|-. -.|++.++.|.+-++..++-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQLA--------GYDVYYE---------------~~d~eT~~rFi~g~~~a~~l---- 143 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQLA--------GYDVYYE---------------EADEETRQRFIEGLKWAVEL---- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEeec--------cceeeec---------------cCCHHHHHHHHHHHHHHHHH----
Confidence 45788899999999999999987532 2222211 13677888888766665542
Q ss_pred cccccCCCCcEEEEEeecCCCC
Q 012093 226 TNLTYKNDPTIFAWELMNEPRC 247 (471)
Q Consensus 226 tg~~yk~~p~I~~wel~NEp~~ 247 (471)
-......++.|++.-|-.
T Consensus 144 ----A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 ----AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred ----HHhhccEEEeeecccHHH
Confidence 112235778999988876
No 158
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.15 E-value=1.2e+02 Score=30.08 Aligned_cols=131 Identities=13% Similarity=0.188 Sum_probs=73.9
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccC------C--CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ------T--SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWD 176 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~------~--~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 176 (471)
.+.+++++.++.+++.|+.+==++. |..|..-. . ..-.+|++.+.....+++..++.|++||+-++..-.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~ 99 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADG 99 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 3578899999999999998655533 22232100 0 011456666777788899999999999988753210
Q ss_pred cCCChhhhhhhhhhcCCCCCCC---CCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC
Q 012093 177 AYGGKAQYVKWGKAAGLNLTSD---DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 248 (471)
Q Consensus 177 ~~gG~~~y~~W~~~~G~~~~~~---~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~ 248 (471)
.......|....+..+...... .--+++|++++.+.+.+.+.+.. ++ .-..|-=+|||...
T Consensus 100 ~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~--------~G---idg~W~D~~E~~~~ 163 (292)
T cd06595 100 IRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK--------QG---VDFWWLDWQQGNRT 163 (292)
T ss_pred cCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh--------cC---CcEEEecCCCCccc
Confidence 0011123544333323221111 12367898887766555444332 22 22346678998653
No 159
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=50.13 E-value=1.6e+02 Score=29.81 Aligned_cols=104 Identities=10% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHH-cCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 012093 151 KALDFVISEAKK-YKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 229 (471)
Q Consensus 151 ~~lD~~l~~a~~-~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~ 229 (471)
+.+.++..+.++ -+++|++.+- .|..... . + ..+..++..++.|.+-+..++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiG-G~~~~~~--~---f-----------~~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIG-GWNFGSA--K---F-----------SAMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEc-CCCCCcc--h---h-----------HHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 444555555444 4899999873 3322110 1 1 12356788888888888888887
Q ss_pred cCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEecc
Q 012093 230 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 230 yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
|+=+--.+-||--+-... .....+.+..+++++.+.+++..++.++++..
T Consensus 111 ~~~DGidiDwE~p~~~~~-~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 111 YGFDGLDLDWEYPGQRGG-PPEDKENFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred cCCCCeeeeeeccccCCC-CHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 665656666775432211 10123578888899999998776667777653
No 160
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=49.94 E-value=33 Score=34.86 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
..-..+.++++|.++|=+.+|.... .+...+...++.+.++.+.|+++||-+++++
T Consensus 108 ~~~sve~a~~~GAdAVk~lv~~~~d------~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 108 DNWSVRRIKEAGADAVKLLLYYRPD------EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred ccccHHHHHHcCCCEEEEEEEeCCC------cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 3344667899999999997763211 0112346788899999999999999999985
No 161
>PRK12677 xylose isomerase; Provisional
Probab=49.67 E-value=37 Score=35.15 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHH--cCCEEEEecC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK--YKIRLILSLT 172 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~--~Gi~vil~l~ 172 (471)
+.+.+-++.++++|++.|.+|.-.++..-..+......-+...+.|+.+.+.|++ +|+++.|+..
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 3477888999999999999985322210001100000112334566788888888 4599999864
No 162
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=48.30 E-value=1.2e+02 Score=30.28 Aligned_cols=104 Identities=13% Similarity=0.271 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHc-CCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 012093 151 KALDFVISEAKKY-KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 229 (471)
Q Consensus 151 ~~lD~~l~~a~~~-Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~ 229 (471)
..+.++..+.+++ +++|++.+. .|....++ .....+++.++.|.+-+..++++
T Consensus 70 ~~~~~~~~lk~~~p~lkvl~siG-G~~~s~~f-----------------~~~~~~~~~r~~Fi~siv~~l~~-------- 123 (322)
T cd06548 70 GNFGQLRKLKQKNPHLKILLSIG-GWTWSGGF-----------------SDAAATEASRAKFADSAVDFIRK-------- 123 (322)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEe-CCCCCCCc-----------------hhHhCCHHHHHHHHHHHHHHHHh--------
Confidence 4455555555544 699999984 34332111 12346788899999888888888
Q ss_pred cCCCCcEEEEEeecCCCC----CCCCChhHHHHHHHHHHHHhhccC----CCCEEEecc
Q 012093 230 YKNDPTIFAWELMNEPRC----TSDPSGDTLQSWIQEMAVYVKSID----AKHLVEIGL 280 (471)
Q Consensus 230 yk~~p~I~~wel~NEp~~----~~~~~g~~~~~w~~~~~~~Ir~~D----p~~lV~~g~ 280 (471)
+.=+---+-||--.-.+. ........+..+++++.+.+++.. ++.++++..
T Consensus 124 ~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av 182 (322)
T cd06548 124 YGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIAA 182 (322)
T ss_pred cCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEEc
Confidence 544444455663211100 001124678888888888887652 456666643
No 163
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.19 E-value=54 Score=32.26 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
+++.|+.++++|+.-|-+ -|-+ .-+....+.++++++.|.+|.|.|
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~~-----------~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFMD-----------RDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E--S-----------STSHHHHHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHcCCCEEee-CcCC-----------CCCHHHHHHHHHHHHHHHHcCcEE
Confidence 699999999999999999 3321 125788999999999999998876
No 164
>PLN02877 alpha-amylase/limit dextrinase
Probab=47.53 E-value=49 Score=38.31 Aligned_cols=23 Identities=9% Similarity=0.311 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 012093 150 FKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 150 l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
...+.++|+.|.++||+||+++.
T Consensus 465 I~efk~mV~~lH~~GI~VImDVV 487 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVV 487 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688999999999999999963
No 165
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=47.50 E-value=60 Score=35.97 Aligned_cols=38 Identities=29% Similarity=0.756 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHhccccccccccCCC-CcEEEEEeecCCCCCC
Q 012093 202 FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTS 249 (471)
Q Consensus 202 ~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~-p~I~~wel~NEp~~~~ 249 (471)
+.+|+.++.++.... ..| |... |+++.|.=||||....
T Consensus 477 f~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFn 515 (915)
T KOG1066|consen 477 FINPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFN 515 (915)
T ss_pred ccCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccC
Confidence 557999999988776 455 6655 6799999999998764
No 166
>PRK09989 hypothetical protein; Provisional
Probab=47.49 E-value=42 Score=32.25 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.+++-++.++++|...|+++.. +.+-...+....+...+.|.++.+.|+++|+.+.++..
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g----~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAG----VVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECcc----CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 44677778889999999998532 10000000011133567888999999999999999864
No 167
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=47.18 E-value=72 Score=33.17 Aligned_cols=89 Identities=17% Similarity=0.276 Sum_probs=62.9
Q ss_pred HHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEE
Q 012093 158 SEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF 237 (471)
Q Consensus 158 ~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~ 237 (471)
..|.+||++|+=++...|.. | ... -..|..+.+..+.+.+++.++++. ++=+
T Consensus 118 n~AHrHGV~vlGTFItEw~e-g-~~~--------------c~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWDE-G-KAT--------------CKEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEecc-c-hhH--------------HHHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 58999999999998877764 2 111 123455666688889999999987 7654
Q ss_pred EEEee--cCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 238 AWELM--NEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 238 ~wel~--NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
+|-+. |-..... -+.+..++..+.+..++.-|+-+|.
T Consensus 170 GWLiNiEn~i~~~~---i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLAK---IPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChhh---CccHHHHHHHHHHHHhhcCCCceEE
Confidence 35443 4333321 2467888999999999999998885
No 168
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=46.29 E-value=3.6e+02 Score=27.97 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEe--ecCCCCCCCC---------ChhHHHHHHHHH-HHHhhcc--C
Q 012093 206 TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--MNEPRCTSDP---------SGDTLQSWIQEM-AVYVKSI--D 271 (471)
Q Consensus 206 ~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel--~NEp~~~~~~---------~g~~~~~w~~~~-~~~Ir~~--D 271 (471)
.+-+.+.+|+-++++. |..| .|-.|.| .|||....+. ..+..+++++.- -.++++- .
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~ 296 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTT 296 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcC
Confidence 4555666666666666 6666 4666766 7999987642 123444454432 2233322 1
Q ss_pred CCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHH
Q 012093 272 AKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIED 351 (471)
Q Consensus 272 p~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~ 351 (471)
.+.-|.+-..+ ...-|. |+-.--.| ..+..+++=+.+|.|.+-..+. .++..
T Consensus 297 knvkllilDD~---------Rg~LP~-WadtvlnD---peAakYv~GIaVHwY~df~~pa---------------~~L~e 348 (518)
T KOG2566|consen 297 KNVKLLILDDQ---------RGLLPH-WADTVLND---PEAAKYVHGIAVHWYQDFLEPA---------------KHLDE 348 (518)
T ss_pred CceEEEEecCC---------ccCCCc-cchhhccC---hhhhhhccceEEEeeccccChh---------------hhhhh
Confidence 12223221110 011232 42110011 1245678878899998732211 11222
Q ss_pred HHH-hcCCcEEEEecCCCCCC-CC---CChHHHHHHHHHHHHHHHHhhhcCCCccceeecccC--CCCCCCCCCCce
Q 012093 352 AEK-YLRMPVLFTEFGVSAKD-TG---YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLF--PDGTDYMNDGYA 421 (471)
Q Consensus 352 a~~-~~~kPviv~EfG~~~~~-~g---~s~~~r~~y~~~~~~~i~~~~~~~~~~~G~~~W~~~--~~g~~~~~dgf~ 421 (471)
..+ ..++=++-+|-...... .| .+=..-.+|-.++.+ .+. .-..||.=|.+. .+|-++|-++|.
T Consensus 349 Th~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~----dln--n~vtGWtdwNl~Ld~~GGP~wv~nfv 419 (518)
T KOG2566|consen 349 THRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIIT----DLN--NHVTGWTDWNLILDAQGGPNWVSNFV 419 (518)
T ss_pred HHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHH----hhh--hhccceeeeeeEecCcCCchhHhccC
Confidence 222 13454555665433221 11 111122344333333 322 236799999986 456688877764
No 169
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.97 E-value=1.6e+02 Score=29.17 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 012093 104 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 181 (471)
Q Consensus 104 ~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~ 181 (471)
..+.+.+.+.++.+++.|+..=-+++ |..|. ..-| .+|++.+-....+++..++.|+++++-+...-.. . .
T Consensus 26 ~~s~~~v~~~~~~~~~~~iP~d~i~i--D~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~-~-s 98 (303)
T cd06592 26 DINQETVLNYAQEIIDNGFPNGQIEI--DDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINT-D-S 98 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCeEEe--CCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCC-C-C
Confidence 35688999999999999986544332 22342 1112 4566666677888999999999999976431110 0 0
Q ss_pred hhhhh------hhhhc-C-CCCC-----C--CCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 182 AQYVK------WGKAA-G-LNLT-----S--DDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 182 ~~y~~------W~~~~-G-~~~~-----~--~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
+.|.. |.+.. | .+.. . .---+++|++++.+.+.+++++..
T Consensus 99 ~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 99 ENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred HHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH
Confidence 11211 11111 1 1100 0 011378999999999999998854
No 170
>PRK14565 triosephosphate isomerase; Provisional
Probab=44.77 E-value=2.3e+02 Score=27.24 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCC
Q 012093 115 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN 194 (471)
Q Consensus 115 ~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~ 194 (471)
..+|++|++.+=+-| ++. ...|+|.. +.+-+=+..|.+.||.+|+|.-..- .. ..
T Consensus 79 ~mLkd~G~~~viiGH-SER--------R~~f~Etd-~~V~~Kv~~al~~gl~pIvCiGE~~------e~-----r~---- 133 (237)
T PRK14565 79 KMLKECGCSYVILGH-SER--------RSTFHETD-SDIRLKAESAIESGLIPIICVGETL------ED-----RE---- 133 (237)
T ss_pred HHHHHcCCCEEEECc-ccc--------cCcCCcCH-HHHHHHHHHHHHCCCEEEEEcCCCH------HH-----HH----
Confidence 358899999988843 211 11233321 1222233889999999999974210 00 00
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCC
Q 012093 195 LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 274 (471)
Q Consensus 195 ~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~ 274 (471)
.....+...+.++..+.- . .+-|++| ||-+..-.....-.+-+.++.+.||+..++.
T Consensus 134 ---------~~~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~~ 190 (237)
T PRK14565 134 ---------NGMTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSKS 190 (237)
T ss_pred ---------ccChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 011122223333333322 2 3467766 4544321100112234578889999987777
Q ss_pred EEEecc
Q 012093 275 LVEIGL 280 (471)
Q Consensus 275 lV~~g~ 280 (471)
+|..|+
T Consensus 191 ~IlYGG 196 (237)
T PRK14565 191 HIIYGG 196 (237)
T ss_pred eEEEcC
Confidence 787764
No 171
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.60 E-value=43 Score=33.60 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=43.1
Q ss_pred HHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 114 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 114 l~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.+.+|++|.++|-+-++.+.. .+...|+.....+.++.+.|++.||-.++++..
T Consensus 111 ~~rike~GadavK~Llyy~pD------~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYDVD------EPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred HHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 567899999999997763321 122467778889999999999999999999863
No 172
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=44.54 E-value=1e+02 Score=32.10 Aligned_cols=109 Identities=12% Similarity=0.216 Sum_probs=65.8
Q ss_pred EeCCeEEECCEEEEEEEeecc-----------ch-hh-hccCC-CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC
Q 012093 75 KQGNQFVVNDQPFYVNGFNTY-----------WL-MV-FAADQ-STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT 140 (471)
Q Consensus 75 v~g~~f~~nGkp~~~~G~N~~-----------~~-~~-~~~~~-~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~ 140 (471)
-+.+.+++||+|+--.--..| |+ +. .+.+. .+++.+++.++.++=..-..++=--|. .+
T Consensus 375 PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs-----~~-- 447 (546)
T COG4615 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFS-----NL-- 447 (546)
T ss_pred CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCccc-----cc--
Confidence 345678999999865544333 21 11 12222 457778888887776555555531111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHh
Q 012093 141 SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLN 220 (471)
Q Consensus 141 ~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~ 220 (471)
...-..-+++--++++++++.|+|..+ |+. -.||..++.|-.-.-..++
T Consensus 448 ---kLStGQkKRlAll~AllEeR~Ilv~DE----------------WAA------------DQDPaFRR~FY~~lLp~LK 496 (546)
T COG4615 448 ---KLSTGQKKRLALLLALLEERDILVLDE----------------WAA------------DQDPAFRREFYQVLLPLLK 496 (546)
T ss_pred ---ccccchHHHHHHHHHHHhhCCeEEeeh----------------hhc------------cCChHHHHHHHHHHhHHHH
Confidence 222334567888899999999998654 332 1378888777766666666
Q ss_pred c
Q 012093 221 R 221 (471)
Q Consensus 221 R 221 (471)
+
T Consensus 497 ~ 497 (546)
T COG4615 497 E 497 (546)
T ss_pred H
Confidence 5
No 173
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=44.46 E-value=3.1e+02 Score=27.11 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCC-CCCCCChhHHHHHHHHHHHHhhccCCCCEEEe
Q 012093 204 HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR-CTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 204 ~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~-~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
+|++++..+.++.++..- -+.|+ |=| .|=+|.-.=+-. ...........+|+.++.+++|+..|. ++.+
T Consensus 121 ~~eWkdii~~~l~rL~d~--GfdGv-yLD--~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi 190 (300)
T COG2342 121 EPEWKDIIRSYLDRLIDQ--GFDGV-YLD--VVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVI 190 (300)
T ss_pred CHHHHHHHHHHHHHHHHc--cCceE-EEe--eechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEE
Confidence 689999999999998875 23332 111 222221111111 000011356788999999999999999 4444
No 174
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=43.50 E-value=60 Score=30.31 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.++.-+++++++|.+.|.++... | ...++.|..+.++|.++|+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~-----------G---l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG-----------G---LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T-----------T---TTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCcee
Confidence 46788999999999999986431 1 233667778889999999998
No 175
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=43.30 E-value=3.9e+02 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=27.7
Q ss_pred hhhhcCCCCceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEec
Q 012093 307 FIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEF 365 (471)
Q Consensus 307 ~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~Ef 365 (471)
|......-..||+.+|+|--.|.... ....++.|.+ .+++|+|-|=
T Consensus 159 ~~~iv~a~~~dfvqlq~ny~d~~n~~------------~~~~l~~A~~-~~~gI~IMeP 204 (391)
T COG1453 159 FKEIVDAYPWDFVQLQYNYIDQKNQA------------GTEGLKYAAS-KGLGIFIMEP 204 (391)
T ss_pred HHHHHhcCCcceEEeeeeeeccchhc------------ccHHHHHHHh-CCCcEEEEee
Confidence 34333444589999999964442110 1223445555 7999999885
No 176
>PRK01060 endonuclease IV; Provisional
Probab=43.02 E-value=1.6e+02 Score=28.39 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.+++.++.++++|++.|=++..+...|. ++.++++.+ +++-++++++||.+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~~~~~~~~---~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWK-----RKPLEELNI---EAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCc-----CCCCCHHHH---HHHHHHHHHcCCCC
Confidence 3888999999999999999754322221 223444444 44557899999985
No 177
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.89 E-value=92 Score=34.18 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
..+.++.+++.+.+.|+..+|++...+ + .+.+...++.|+++|+.|...+
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~ln--------------d--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALN--------------D--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCEEEEEE
Confidence 356788999999999999999974321 1 2567778889999999887664
No 178
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=42.76 E-value=87 Score=34.43 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=45.4
Q ss_pred EEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 88 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 88 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.++|.|.- |..+...+.++.+++.+++.|+..+|++...+ .++.+...++.|+++|+.+
T Consensus 81 l~Rg~N~~-----gy~~ypd~vv~~~v~~A~~~Gvd~irif~~ln----------------d~~n~~~~i~~ak~~G~~v 139 (592)
T PRK09282 81 LLRGQNLV-----GYRHYPDDVVEKFVEKAAENGIDIFRIFDALN----------------DVRNMEVAIKAAKKAGAHV 139 (592)
T ss_pred Eecccccc-----ccccccchhhHHHHHHHHHCCCCEEEEEEecC----------------hHHHHHHHHHHHHHcCCEE
Confidence 34577742 32223356788999999999999999964311 1367778889999999998
Q ss_pred EEec
Q 012093 168 ILSL 171 (471)
Q Consensus 168 il~l 171 (471)
...+
T Consensus 140 ~~~i 143 (592)
T PRK09282 140 QGTI 143 (592)
T ss_pred EEEE
Confidence 8665
No 179
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=42.65 E-value=1.4e+02 Score=28.68 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 012093 147 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 226 (471)
Q Consensus 147 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~t 226 (471)
+...+.++++++.|++.|...|.... |..+ .-+..++..+.+.+.++++++.
T Consensus 81 ~~~~~~~~~~i~~a~~lga~~i~~~~------g~~~-----------------~~~~~~~~~~~~~~~l~~l~~~----- 132 (258)
T PRK09997 81 EEFRDGVAAAIRYARALGNKKINCLV------GKTP-----------------AGFSSEQIHATLVENLRYAANM----- 132 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEECC------CCCC-----------------CCCCHHHHHHHHHHHHHHHHHH-----
Confidence 45578899999999999999876532 1110 0022345566777888888776
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCC
Q 012093 227 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 274 (471)
Q Consensus 227 g~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~ 274 (471)
.+++.-.+++|..|-+..... +..-..++.+.++++++..
T Consensus 133 ---a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 ---LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred ---HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 666677888998886432110 0011245566777777544
No 180
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=42.51 E-value=74 Score=31.93 Aligned_cols=93 Identities=13% Similarity=0.290 Sum_probs=52.5
Q ss_pred HHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCC-CHHHHHHHHHHHHHHHhccccccccccCCCC
Q 012093 156 VISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFS-HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 234 (471)
Q Consensus 156 ~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~-~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p 234 (471)
++++|+++|++|+=++.-.|.. +. .|... +.. +++-...+.+.+-+|++. |+=+
T Consensus 47 widaAHrnGV~vLGTiife~~~--~~----~~~~~----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD- 101 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGG--GA----EWCEE----------LLEKDEDGSFPYADKLIEIAKY--------YGFD- 101 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE----H----HHHHH----------HT---TTS--HHHHHHHHHHHH--------HT---
T ss_pred hHHHHHhcCceEEEEEEecCCc--hH----HHHHH----------HHcCCcccccHHHHHHHHHHHH--------cCCC-
Confidence 4699999999999887643322 21 23221 222 333344567777788887 7644
Q ss_pred cEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 235 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 235 ~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
+|-+-=|-........+.+..|++.+.+..++ .|...|.
T Consensus 102 ---Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ---GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ---EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ---ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 45555554432111246788999999999999 7776665
No 181
>smart00816 Amb_V_allergen Amb V Allergen. Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphhydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens.
Probab=41.72 E-value=12 Score=25.24 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=11.1
Q ss_pred ccCCCCCcccccc
Q 012093 445 NSLCSTKCKWGCK 457 (471)
Q Consensus 445 ~~~~~~~~~~~~~ 457 (471)
.++|.++|||+.+
T Consensus 20 cSdpGrYCpwqvV 32 (45)
T smart00816 20 CSDPGRYCPWQVV 32 (45)
T ss_pred cCCCcccCCceEE
Confidence 3789999999976
No 182
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.71 E-value=3.3e+02 Score=26.19 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+.+.+.+.-+.+++.|+.+.=+..-....++...+.+ ..-++.++.+.++++.|.+.|...|... . + ..+.
T Consensus 50 ~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~-~~r~~~~~~~~~~i~~a~~lG~~~v~~~-~------~-~~~~ 120 (284)
T PRK13210 50 SKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDP-ATRERALEIMKKAIRLAQDLGIRTIQLA-G------Y-DVYY 120 (284)
T ss_pred CHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCH-HHHHHHHHHHHHHHHHHHHhCCCEEEEC-C------c-cccc
Confidence 3456666777889999987755321000011000111 1124578899999999999999998642 1 0 0000
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEee
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM 242 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~ 242 (471)
. ..+++..+...+.++.++++ .+.+--.+++|..
T Consensus 121 ------------~---~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~lE~~ 154 (284)
T PRK13210 121 ------------E---EKSEETRQRFIEGLAWAVEQ--------AAAAQVMLAVEIM 154 (284)
T ss_pred ------------c---cccHHHHHHHHHHHHHHHHH--------HHHhCCEEEEEec
Confidence 0 11345566677777777776 5555555666654
No 183
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.21 E-value=55 Score=32.90 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 112 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 112 ~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
-..+.+|++|.++|-+-++.+.. .+-..|+.....+.++.+.|++.||-.++++..
T Consensus 111 ws~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYDVD------GDEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 45678999999999997763221 122456778889999999999999999999864
No 184
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.20 E-value=59 Score=32.63 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 113 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 113 dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
..+.+|++|.++|-+-++.+.. .+-..|+.....+.++-++|.+.||-.++++..
T Consensus 111 s~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDVD------DAEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCCC------CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4667899999999998763321 112456778889999999999999999999864
No 185
>TIGR03252 uncharacterized HhH-GPD family protein. This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).
Probab=38.82 E-value=16 Score=33.41 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=19.8
Q ss_pred ccccchhHhHHhhhhhhccccccc
Q 012093 8 LGSKSFFSLVIFTILIENSSWTVF 31 (471)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (471)
|...+-|-+||.+||.|||+|...
T Consensus 13 l~~~~pFelLVa~ILSQqTtd~nv 36 (177)
T TIGR03252 13 LLSSDPFALLTGMLLDQQVPMERA 36 (177)
T ss_pred cccCChHHHHHHHHHhccCcHHHH
Confidence 345677999999999999999754
No 186
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=38.55 E-value=2.1e+02 Score=33.17 Aligned_cols=111 Identities=16% Similarity=0.277 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCcCcCCC-----hhhhhh-hhh---hcCCCCCC----CCCcCCCHHHHHHHHHHH
Q 012093 150 FKALDFVISEAKKYKIRLILSLT-NNWDAYGG-----KAQYVK-WGK---AAGLNLTS----DDEFFSHTTLKSYYKAHV 215 (471)
Q Consensus 150 l~~lD~~l~~a~~~Gi~vil~l~-~~w~~~gG-----~~~y~~-W~~---~~G~~~~~----~~~f~~~~~~~~~~~~~~ 215 (471)
...|.++|+.|+++||+||+++. ||-...|. .+.+.. |.. ..|. ... .+.-..++.+++.+.+.+
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~-~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGG-VENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCC-eecCCCCcCCCCCCHHHHHHHHHHH
Confidence 45788899999999999999974 33111110 010111 110 0111 000 011123578888888888
Q ss_pred HHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEeccccc
Q 012093 216 KTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGF 283 (471)
Q Consensus 216 ~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~ 283 (471)
+..++. |+=+- +-++++.... ..+++++.+.+|+++|+-.+ +| |+|
T Consensus 482 ~~W~~e--------y~VDG--FRfDlm~~~~----------~~f~~~~~~~l~~i~pdi~l-~G-EgW 527 (898)
T TIGR02103 482 VVWAKD--------YKVDG--FRFDLMGHHP----------KAQMLAAREAIKALTPEIYF-YG-EGW 527 (898)
T ss_pred HHHHHH--------cCCCE--EEEechhhCC----------HHHHHHHHHHHHHhCCCEEE-Ee-cCC
Confidence 888876 54332 3356665443 23557778888999987443 34 344
No 187
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=36.72 E-value=74 Score=30.09 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 167 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 167 (471)
.++.-+++++++|.+.|.++... | ...++.|..+.++|.++|+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~-----------G---l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMG-----------G---LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCCcc
Confidence 57888999999999999986431 1 233566667788999999974
No 188
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.70 E-value=60 Score=31.64 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 112 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 112 ~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+|++.+.+.|+..||++.-... .. .+..-+.=-++.++.+..++..|+++|++|.+.+-
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~-~~-~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSP-FL-REASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 5788899999999999652110 00 01111111267788999999999999999988874
No 189
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.56 E-value=1.7e+02 Score=29.63 Aligned_cols=117 Identities=14% Similarity=0.220 Sum_probs=68.7
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhh
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 184 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y 184 (471)
.+.+++++.++.+++.++-.==++. |..|..- -..-.+|++.+-....+++..++.|+++++-.+..- .+| .
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i-~~g-~--- 92 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHV--DVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVI-SYG-G--- 92 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEE--cCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCce-ecC-c---
Confidence 3578899999999999987544432 2222100 001134555555556788999999999988764321 111 0
Q ss_pred hhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC
Q 012093 185 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 248 (471)
Q Consensus 185 ~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~ 248 (471)
.|.. .+ .-. -|++|+.++.+.+..+.+.+- |+ -..|-=+|||...
T Consensus 93 -~~~~-~~----~~p-Dftnp~ar~wW~~~~~~l~~~-----Gv-------~~~W~DmnEp~~~ 137 (332)
T cd06601 93 -GLGS-PG----LYP-DLGRPDVREWWGNQYKYLFDI-----GL-------EFVWQDMTTPAIM 137 (332)
T ss_pred -cCCC-Cc----eee-CCCCHHHHHHHHHHHHHHHhC-----CC-------ceeecCCCCcccc
Confidence 1210 01 011 267899999887777666542 11 1258889999754
No 190
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=35.94 E-value=4.5e+02 Score=26.11 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 152 ALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 152 ~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
.+..-+..|++.|++|++.+- |.. + .....++..++.|.+.+..+++.
T Consensus 61 ~~~~~i~~~q~~G~KVllSiG-------G~~---------~------~~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIG-------GAN---------G------HVDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEe-------CCC---------C------ccccCCHHHHHHHHHHHHHHHHH
Confidence 445667889999999999873 210 0 01145677788888888888876
No 191
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.93 E-value=76 Score=30.97 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.++++.+.+.|+..||+... ...++.+..+++.|+++|+.|.+.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~~----------------~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFH----------------KHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHHHHHHhcCCcCEEEEecc----------------cccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46888899999999999531 12367777889999999999988764
No 192
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=35.90 E-value=99 Score=22.78 Aligned_cols=47 Identities=23% Similarity=0.175 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
...++.++.+++.|++++=+.-+.. +..+..+.++++++||++|.-+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~-----------------~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGN-----------------LFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCc-----------------ccCHHHHHHHHHHcCCeEEEEE
Confidence 3467889999999999988743211 1222355688889999998643
No 193
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.82 E-value=1.1e+02 Score=36.31 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=45.3
Q ss_pred EEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCE
Q 012093 87 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 166 (471)
Q Consensus 87 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 166 (471)
..+||.|.. |+.....+.++.-++.+++.|++++|++-.-+ .++.|...++.+++.|..
T Consensus 609 ml~Rg~n~v-----gy~~ypd~vv~~f~~~~~~~GidifrifD~lN----------------~~~n~~~~~~~~~~~g~~ 667 (1143)
T TIGR01235 609 MLLRGANGV-----GYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLN----------------WVENMRVGMDAVAEAGKV 667 (1143)
T ss_pred eeecccccc-----CccCCCHHHHHHHHHHHHHcCCCEEEECccCc----------------CHHHHHHHHHHHHHcCCE
Confidence 348888853 33334467888889999999999999963211 145666777888888887
Q ss_pred EEEec
Q 012093 167 LILSL 171 (471)
Q Consensus 167 vil~l 171 (471)
+-..+
T Consensus 668 ~~~~i 672 (1143)
T TIGR01235 668 VEAAI 672 (1143)
T ss_pred EEEEE
Confidence 76555
No 194
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=35.25 E-value=1.7e+02 Score=29.05 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCC--CCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
+.+.+++.++.+++.|.+.|.++.-... ..+. ..++ .++. +.+..++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~-~~~~-~~~~~~~~~~---e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGV-LSPG-DPPPDTQFSE---EELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCc-CCCC-CCCcccCcCH---HHHHHHHHHHHHcCCEEEEEe
Confidence 4788899999999999999999752111 1000 0111 3443 455678999999999987654
No 195
>PF03913 Amb_V_allergen: Amb V Allergen; InterPro: IPR005611 Amb V is an Ambrosia sp (ragweed) pollen allergen. Amb t V has been shown to contain a C-terminal helix as the major T cell epitope. Free sulphydryl groups also play a major role in the T cell recognition of cross-reactivity T cell epitopes within these related allergens [].; PDB: 2BBG_A 3BBG_A 1BBG_A.
Probab=35.22 E-value=17 Score=24.42 Aligned_cols=13 Identities=23% Similarity=0.355 Sum_probs=5.7
Q ss_pred ccCCCCCcccccc
Q 012093 445 NSLCSTKCKWGCK 457 (471)
Q Consensus 445 ~~~~~~~~~~~~~ 457 (471)
.++|..+|||+.+
T Consensus 19 cSdpGrYCpwqvV 31 (44)
T PF03913_consen 19 CSDPGRYCPWQVV 31 (44)
T ss_dssp E-SSSSS-----E
T ss_pred cCCCcccccceee
Confidence 3789999999876
No 196
>PRK01229 N-glycosylase/DNA lyase; Provisional
Probab=35.12 E-value=19 Score=33.84 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=20.2
Q ss_pred cccchhHhHHhhhhhhcccccccc
Q 012093 9 GSKSFFSLVIFTILIENSSWTVFG 32 (471)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~ 32 (471)
..+..|.+|+++||.|||+|...-
T Consensus 33 ~~~~~f~~Lv~~ILsqnT~~~~v~ 56 (208)
T PRK01229 33 DEEDLFSELSFCILTANSSAEGGI 56 (208)
T ss_pred ccCChHHHHHHHHhcCcCcHHHHH
Confidence 456789999999999999997543
No 197
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=34.76 E-value=3.8e+02 Score=30.57 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHhCCCC--EEEEee-ccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc-CcCCCh
Q 012093 106 TRGKVSELFHQASSAGLT--VCRTWA-FNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNW-DAYGGK 181 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N--~vR~~~-~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w-~~~gG~ 181 (471)
+++.+.+-++.+++..+- ++++-. |....|..+ .+|+..|-..+.+++..++.||++|+-+.-.- .+.
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~F-----~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~--- 349 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGDF-----TWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDS--- 349 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEEEeehhhhccccce-----EECcccCCCHHHHHHHHHhcCceEEEEeccccccCC---
Confidence 356677777777776654 444422 111122222 45666666667889999999999998763110 000
Q ss_pred hhhhh------hhhh-cCCC-------CCCCCCcCCCHHHHHHHHH-HHHHHHhccccccccccCCCCcEEEEEeecCCC
Q 012093 182 AQYVK------WGKA-AGLN-------LTSDDEFFSHTTLKSYYKA-HVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 246 (471)
Q Consensus 182 ~~y~~------W~~~-~G~~-------~~~~~~f~~~~~~~~~~~~-~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~ 246 (471)
+.|.. +.+. .|.. ....---|++|+.++.+.+ ..+.++. -.....|-=+|||.
T Consensus 350 ~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d------------~Gv~g~W~D~nEp~ 417 (772)
T COG1501 350 PLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLD------------LGVDGFWNDMNEPE 417 (772)
T ss_pred chHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHh------------cCccEEEccCCCCc
Confidence 11110 0000 0100 0011123789999999985 3344444 22344578899998
Q ss_pred CCCCC------ChhHH-----HHHHHHHHHHhhccCC-CCEEEeccccc
Q 012093 247 CTSDP------SGDTL-----QSWIQEMAVYVKSIDA-KHLVEIGLEGF 283 (471)
Q Consensus 247 ~~~~~------~g~~~-----~~w~~~~~~~Ir~~Dp-~~lV~~g~~g~ 283 (471)
..... .+..+ .-+.+..++.+|+.+| .+++...-.++
T Consensus 418 ~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 418 PFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred cccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 76321 11111 1245677899999977 46776654343
No 198
>PTZ00333 triosephosphate isomerase; Provisional
Probab=34.53 E-value=3.4e+02 Score=26.38 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=32.3
Q ss_pred HHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 115 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 115 ~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
..++++|++.|=+-| ++. ...|.|. -+.+.+-+..|.++||.+|++.-
T Consensus 83 ~mL~d~G~~~viiGH-SER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 83 EMLKDLGINWTILGH-SER--------RQYFGET-NEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHcCCCEEEECc-ccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcC
Confidence 468899999998843 221 1123222 24455667899999999999974
No 199
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=34.37 E-value=5.5e+02 Score=26.67 Aligned_cols=172 Identities=14% Similarity=0.199 Sum_probs=89.5
Q ss_pred EEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccc-----------cCCCCCCCChHHHHHHHHH
Q 012093 88 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRA-----------LQTSPSVYDEEVFKALDFV 156 (471)
Q Consensus 88 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~-----------~~~~~g~~~~~~l~~lD~~ 156 (471)
...|.|.|+.... -.+.+.+.+.++.++++|++.+=+ |..|-. ..+.+..|. ..|..+
T Consensus 41 ~pv~~nsW~~~~~---d~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~~d~~~~GdW~~~~~kFP----~Gl~~l 109 (394)
T PF02065_consen 41 PPVGWNSWEAYYF---DITEEKILELADAAAELGYEYFVI----DDGWFGGRDDDNAGLGDWEPDPKKFP----NGLKPL 109 (394)
T ss_dssp --EEEESHHHHTT---G--HHHHHHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTTSBECBBTTTST----THHHHH
T ss_pred CceEEEcccccCc---CCCHHHHHHHHHHHHHhCCEEEEE----cCccccccCCCcccCCceeEChhhhC----CcHHHH
Confidence 4568887643221 246889999999999999996555 223421 122233342 347788
Q ss_pred HHHHHHcCCEEEEecCCC--cCcCCChhhhhhhhhhc-CCCC--CCCC--CcCCCHHHHHHHHHHHHHHHhccccccccc
Q 012093 157 ISEAKKYKIRLILSLTNN--WDAYGGKAQYVKWGKAA-GLNL--TSDD--EFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 229 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~~~--w~~~gG~~~y~~W~~~~-G~~~--~~~~--~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~ 229 (471)
++.+++.||+.-|=+--. -..+.=...+++|.... +.+. .... --+++|++++...+.+.++++.
T Consensus 110 ~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~-------- 181 (394)
T PF02065_consen 110 ADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE-------- 181 (394)
T ss_dssp HHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------
Confidence 899999999986644100 00000001234564321 1111 0111 2357899999999999988876
Q ss_pred cCCCCcEEEEEeecCCCCCCCCC-hhHHHHH---HHHHHHHhhccCCCCEEEecc
Q 012093 230 YKNDPTIFAWELMNEPRCTSDPS-GDTLQSW---IQEMAVYVKSIDAKHLVEIGL 280 (471)
Q Consensus 230 yk~~p~I~~wel~NEp~~~~~~~-g~~~~~w---~~~~~~~Ir~~Dp~~lV~~g~ 280 (471)
++= .-+=|+..-......... ++...+. +.++.+.||+.-|+.+|-...
T Consensus 182 ~gi--dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~Cs 234 (394)
T PF02065_consen 182 WGI--DYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCS 234 (394)
T ss_dssp TT---SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-B
T ss_pred cCC--CEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 321 223366643333222211 1223322 346788899999999887654
No 200
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=34.15 E-value=72 Score=31.00 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 114 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 114 l~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
-+.+|+.|.+++.+.+|.+.. .+ ..|+..+..+.++.++|.+.+|-.++++..
T Consensus 117 a~riK~~G~~avK~Lvy~~~D------~~-e~neqk~a~ierigsec~aedi~f~lE~lt 169 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSD------ED-EINEQKLAYIERIGSECHAEDLPFFLEPLT 169 (306)
T ss_pred HHHHHHhcccceEEEEEEcCC------ch-HHhHHHHHHHHHHHHHhhhcCCceeEeeee
Confidence 457899999999998874321 22 567888999999999999999999999853
No 201
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=33.61 E-value=3.8e+02 Score=26.41 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=43.9
Q ss_pred EEEEEEeeccchhhhccCCCchhHHHHHHHHH----HhCCCCEEEEeeccCCCccccCCCCCCCChHH-HHHHHHHHHHH
Q 012093 86 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQA----SSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFVISEA 160 (471)
Q Consensus 86 p~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~m----k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~-l~~lD~~l~~a 160 (471)
.+++.|-+.-+ +++.+.+--+.+ +++|++.+|=..|.-. + .++|..|.--. -+.|+.+-+..
T Consensus 17 ~~~iaGPCsvE---------s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~Ka--p--RTSp~sFqG~G~eeGL~iL~~vk 83 (281)
T PRK12457 17 FVLFGGINVLE---------SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKA--N--RSSIHSYRGVGLDEGLRIFEEVK 83 (281)
T ss_pred eEEEecCCccc---------CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCC--C--CCCCCCCCCCCHHHHHHHHHHHH
Confidence 35667777532 344444444444 4699999887666300 1 12233332211 24455555889
Q ss_pred HHcCCEEEEecCC
Q 012093 161 KKYKIRLILSLTN 173 (471)
Q Consensus 161 ~~~Gi~vil~l~~ 173 (471)
+++||.|+-++|+
T Consensus 84 ~~~GlpvvTeV~~ 96 (281)
T PRK12457 84 ARFGVPVITDVHE 96 (281)
T ss_pred HHHCCceEEEeCC
Confidence 9999999999985
No 202
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=32.91 E-value=1.6e+02 Score=28.02 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=50.7
Q ss_pred CCEEEEEEEeeccchhhhccCCC-chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQS-TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAK 161 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~-~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~ 161 (471)
+|+.+-+.|.-.- |. .. ..+.+..-++.+++.|+.-|.++.|.|+.- ..| ..++..|.++.+.+.
T Consensus 26 ~~~~lHl~GLlSd-----GG-VHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRD----t~P----~S~~~yl~~l~~~l~ 91 (223)
T PF06415_consen 26 NGGRLHLMGLLSD-----GG-VHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRD----TPP----KSALKYLEELEEKLA 91 (223)
T ss_dssp TT--EEEEEEESS------S-SS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSS----S-T----TTHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecC-----CC-ccccHHHHHHHHHHHHHcCCCEEEEEEecCCCC----CCc----chHHHHHHHHHHHHH
Confidence 4555666666531 11 22 256788899999999999999999988741 112 456788889999999
Q ss_pred HcCCEEEEecC
Q 012093 162 KYKIRLILSLT 172 (471)
Q Consensus 162 ~~Gi~vil~l~ 172 (471)
+.|+--|.++.
T Consensus 92 ~~~~g~IAsv~ 102 (223)
T PF06415_consen 92 EIGIGRIASVS 102 (223)
T ss_dssp HHTCTEEEEEE
T ss_pred hhCCceEEEEe
Confidence 99887777764
No 203
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.91 E-value=67 Score=31.08 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.++++.+.+.|+..||+...... .. .+..-+.=.++.++.+..+++.|++.|+.|.+.+
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~-~~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD-IH-LAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 46788889999999999653211 00 0111122236778899999999999999987665
No 204
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=32.69 E-value=76 Score=31.38 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.++++.+.+.|+..||++..... .. .+.+-+.=.++.++.+..+++.|+++|+.|...+.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~-~~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASE-AF-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 47788888999999999753211 10 01111222367889999999999999999986653
No 205
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.28 E-value=1.4e+02 Score=28.66 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+..+++.++.++++|+++|=++. +. + .++++ ..-++|+.+.++|++|+.++.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEiS~---G~---~-----~i~~~---~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEISD---GS---M-----EISLE---ERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEEcC---Cc---c-----CCCHH---HHHHHHHHHHhCCCeEecccc
Confidence 46788999999999999999942 21 1 12232 233678999999999998863
No 206
>PRK14567 triosephosphate isomerase; Provisional
Probab=32.15 E-value=4.3e+02 Score=25.70 Aligned_cols=47 Identities=9% Similarity=0.034 Sum_probs=30.8
Q ss_pred HHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 116 QASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 116 ~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+|++|++.|=+-| ++. ...|.|. -+.+-+-+..|.+.||.+|++.-
T Consensus 80 mLkd~G~~yviiGH-SER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 80 MLEDIGCDYLLIGH-SER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHcCCCEEEECc-ccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 58899999998843 211 1123322 12344556789999999999974
No 207
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=32.13 E-value=1.1e+02 Score=29.59 Aligned_cols=52 Identities=17% Similarity=0.265 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+..+++.++.++++|+++|=++- +. + ..+. +..-++|..|.+.|++|+.++.
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSd---Gt---i-----~l~~---~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISD---GT---I-----DLPE---EERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----SS---S--------H---HHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEecC---Cc---e-----eCCH---HHHHHHHHHHHHCCCEEeeccc
Confidence 45789999999999999999942 21 1 1122 2233668999999999999874
No 208
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=32.02 E-value=1.9e+02 Score=28.55 Aligned_cols=77 Identities=13% Similarity=0.226 Sum_probs=46.0
Q ss_pred CEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHh----CCCCEEEEeeccCCCccccCCCCCCCChHH-HHHHHHHHH
Q 012093 84 DQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASS----AGLTVCRTWAFNDGQWRALQTSPSVYDEEV-FKALDFVIS 158 (471)
Q Consensus 84 Gkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~----~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~-l~~lD~~l~ 158 (471)
+..+.+.|-|.-+ +++.+.+--+.+|+ +|++.||=..|.-- ++ ++|..|.--. -+.|.-+-+
T Consensus 15 ~~~~lIAGPC~iE---------s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKA--pR--TSp~sFrG~G~eeGL~iL~~ 81 (290)
T PLN03033 15 EPFFLLAGPNVIE---------SEEHILRMAKHIKDISTKLGLPLVFKSSFDKA--NR--TSSKSFRGPGMAEGLKILEK 81 (290)
T ss_pred CCeEEEecCChhc---------CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCC--CC--CCCCCCCCCCHHHHHHHHHH
Confidence 3445777887532 34555555555555 59999998776300 11 2233332111 234444557
Q ss_pred HHHHcCCEEEEecCC
Q 012093 159 EAKKYKIRLILSLTN 173 (471)
Q Consensus 159 ~a~~~Gi~vil~l~~ 173 (471)
..+++|+.|+-+.|+
T Consensus 82 vk~~~glpvvTeV~~ 96 (290)
T PLN03033 82 VKVAYDLPIVTDVHE 96 (290)
T ss_pred HHHHHCCceEEeeCC
Confidence 889999999999985
No 209
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.00 E-value=1.2e+02 Score=25.51 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 169 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 169 (471)
..+.+.+.++.+.+.|+. ++|..+ |..++ ++++.|+++||+++=
T Consensus 64 ~~~~~~~~v~~~~~~g~~--~v~~~~-----------g~~~~-------~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVK--AVWLQP-----------GAESE-------ELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-S--EEEE-T-----------TS--H-------HHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEEc-----------chHHH-------HHHHHHHHcCCEEEe
Confidence 467889999999999988 455432 22333 556899999999863
No 210
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=31.87 E-value=1e+02 Score=29.05 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+.+.+++-++..-+.--+++=+-.+. + + .+ -+.-+.+..+++.++++|++.+.+.+.. . ..-.
T Consensus 72 ~~~~i~~~l~~al~~vp~a~GvnNhm-G--S-------~~-T~~~~~m~~vl~~l~~~gl~FvDS~T~~--~----s~a~ 134 (213)
T PF04748_consen 72 SEEEIRKRLEAALARVPGAVGVNNHM-G--S-------RF-TSDREAMRWVLEVLKERGLFFVDSRTTP--R----SVAP 134 (213)
T ss_dssp -HHHHHHHHHHHHCCSTT-SEEEEEE----C-------CH-HC-HHHHHHHHHHHHHTT-EEEE-S--T--T-----SHH
T ss_pred CHHHHHHHHHHHHHHCCCcEEEecCC-C--c-------cc-cCCHHHHHHHHHHHHHcCCEEEeCCCCc--c----cHHH
Confidence 46777777776665433333332111 0 0 11 1123456778899999999999886531 1 1101
Q ss_pred hhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhc
Q 012093 186 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 221 (471)
Q Consensus 186 ~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R 221 (471)
.=+...|.|....+-|.++....++.++.++++++.
T Consensus 135 ~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~ 170 (213)
T PF04748_consen 135 QVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARI 170 (213)
T ss_dssp HHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHh
Confidence 112234555444556777766666666666666665
No 211
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=31.71 E-value=3.3e+02 Score=27.43 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+.+.+++.++.+++.|+.+==++. |..|..- -..-.+|++.+-....+++..+++|+++++-.+..-....+.+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~ 98 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYL--DIDYMDG-YRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYE 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CchhhCC-CCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHH
Confidence 577889999999999998655543 2222110 0001345555555668889999999999876542111000111222
Q ss_pred hhh------h-hcCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCC
Q 012093 186 KWG------K-AAGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 247 (471)
Q Consensus 186 ~W~------~-~~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~ 247 (471)
+=. + ..|.+. ...---|++|++++.+.+.++.+++- | .-..|.=+|||..
T Consensus 99 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~-----G-------vdg~w~D~~Ep~~ 162 (339)
T cd06604 99 EGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDL-----G-------VDGIWNDMNEPAV 162 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhC-----C-------CceEeecCCCccc
Confidence 100 0 011110 00112377899999998888877632 1 1223666788753
No 212
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=31.21 E-value=91 Score=33.91 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCC--ccccC-CCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQ--WRALQ-TSPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~--~~~~~-~~~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.-+..-++.++++|++++=+..+.... +..+. .....+++ ..++-+..+++.+.++||++|+++.
T Consensus 40 ~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 40 KGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred ccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 345577889999999999886542110 00000 00111221 2356778899999999999999974
No 213
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=31.01 E-value=2.8e+02 Score=28.27 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=58.5
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCC-------EEEEeecc---CCCccccCCCC---CCCC-hH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLT-------VCRTWAFN---DGQWRALQTSP---SVYD-EE 148 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N-------~vR~~~~~---~~~~~~~~~~~---g~~~-~~ 148 (471)
+.+.+.+.|-+. ..+++.+.+.-+.+++++.. ++|+..+- ...|..+...| |.++ ++
T Consensus 51 d~rllvIvGPCS---------Ihd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~ 121 (356)
T PRK12822 51 DPRLLVIIGPCS---------IHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEK 121 (356)
T ss_pred CCCeEEEEcCCc---------CCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHH
Confidence 566678888874 23467777888888999988 59985431 11243332222 5566 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 149 VFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 149 ~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.|..+.+++....++||.+.-++.+
T Consensus 122 GL~i~R~ll~~~~~~GlPvatE~ld 146 (356)
T PRK12822 122 GLRLARQLLLSINTLGLATATEFLD 146 (356)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeecc
Confidence 8999999888899999999999875
No 214
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=30.62 E-value=2.9e+02 Score=28.19 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCC-------CCEEEEeecc---CCCccccC--CC-CCCCC-hH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAG-------LTVCRTWAFN---DGQWRALQ--TS-PSVYD-EE 148 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G-------~N~vR~~~~~---~~~~~~~~--~~-~g~~~-~~ 148 (471)
+.+.+.+.|-+.- .+++.+.+.-+.+|++| +.++|+..+- ...|..+. |. .|.|+ ++
T Consensus 51 d~rllvI~GPCSI---------ed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~ 121 (349)
T PRK09261 51 DDRLLVVVGPCSI---------HDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIND 121 (349)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHH
Confidence 5777888998853 23455555555555555 4699986541 12343332 21 25677 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 149 VFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 149 ~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.|..+.+++-...+.||.++-++.+
T Consensus 122 GL~~~R~ll~~~~e~GlpvatE~ld 146 (349)
T PRK09261 122 GLRIARKLLLDINELGLPAATEFLD 146 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecc
Confidence 8988888877789999999999875
No 215
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=30.37 E-value=4.8e+02 Score=26.34 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=64.9
Q ss_pred HHHHHHHHcCC--EEEEecCCCcCcCCChhhhhh-----hhhhcC-CCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 012093 155 FVISEAKKYKI--RLILSLTNNWDAYGGKAQYVK-----WGKAAG-LNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 226 (471)
Q Consensus 155 ~~l~~a~~~Gi--~vil~l~~~w~~~gG~~~y~~-----W~~~~G-~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~t 226 (471)
.+++...+.|+ -|++.|.-++..+. ...|.+ +....+ ..+..-..|+++|.+.+++.+.++.-++.
T Consensus 106 ~~v~~l~~~gv~~iv~~pLyPqyS~sT-t~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~----- 179 (320)
T COG0276 106 EAVEELKKDGVERIVVLPLYPQYSSST-TGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK----- 179 (320)
T ss_pred HHHHHHHHcCCCeEEEEECCccccccc-HHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh-----
Confidence 56688899999 66666654332221 111221 111112 22334467999999999999999888776
Q ss_pred ccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhcc
Q 012093 227 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI 270 (471)
Q Consensus 227 g~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~ 270 (471)
..-++.++.++---=|...... |+.+..++++.++.|++.
T Consensus 180 ---~~~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 ---HPRDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEA 219 (320)
T ss_pred ---cCCCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHH
Confidence 4334566666654444432222 567888889999998863
No 216
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.17 E-value=1.3e+02 Score=28.80 Aligned_cols=63 Identities=8% Similarity=0.209 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.+.|++-+.++.++|+.+|-+..|. . | +++....-.....+.|...+++|.++++.+-++.-+
T Consensus 95 leiM~KaI~LA~dLGIRtIQLAGYD-V-Y--YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMD 157 (287)
T COG3623 95 LEIMEKAIQLAQDLGIRTIQLAGYD-V-Y--YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMD 157 (287)
T ss_pred HHHHHHHHHHHHHhCceeEeeccce-e-e--eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeecc
Confidence 4678999999999999999996552 1 1 232221112344567889999999999998887643
No 217
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=1.2e+02 Score=30.27 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCC---CccccCCCC---CCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDG---QWRALQTSP---SVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~---~~~~~~~~~---g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+.+.++.|+.+|+.|+|++=+-.-.+. .++.-.+-+ +.. .-+..+..+|..|++.|||+|.-.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv--~~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSV--NKFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcc--ccccccHHHHHHHHhcCeEEEEEE
Confidence 3678889999999999999987432221 121110000 111 124556789999999999998664
No 218
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.75 E-value=1.8e+02 Score=30.95 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+.++..++.+.+.|+..+|++... ++ ++.+...++.|+++|+.|...+
T Consensus 94 dDvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 142 (467)
T PRK14041 94 DDVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVAKKHGAHVQGAI 142 (467)
T ss_pred chhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 4567888999999999999997431 11 5677888999999999987655
No 219
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=29.01 E-value=3.7e+02 Score=25.47 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCC----CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhh
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQT----SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVK 186 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~----~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~ 186 (471)
++-.+.+++.|+.+.=+. .+...|..... .|.. .++..+.++++++.|.+.|...|.... |..+
T Consensus 42 ~~l~~~l~~~gl~v~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~a~~lg~~~i~~~~------g~~~---- 109 (254)
T TIGR03234 42 EALKARLAAAGLEQVLFN-LPAGDWAAGERGIACLPGR-EEEFREGVALAIAYARALGCPQVNCLA------GKRP---- 109 (254)
T ss_pred HHHHHHHHHcCCeEEEEe-CCCCccccCCCccccCCcc-HHHHHHHHHHHHHHHHHhCCCEEEECc------CCCC----
Confidence 344556778999865432 11112211000 0111 134568889999999999999876432 1100
Q ss_pred hhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHH
Q 012093 187 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVY 266 (471)
Q Consensus 187 W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~ 266 (471)
+ . ...++..+.+.+.+++++++ -++..-.++.|..|-+.... .+..=..++.+.
T Consensus 110 -----~-------~-~~~~~~~~~~~~~l~~l~~~--------A~~~gi~l~lE~~~~~~~~~-----~~l~t~~~~~~l 163 (254)
T TIGR03234 110 -----A-------G-VSPEEARATLVENLRYAADA--------LDRIGLTLLIEPINSFDMPG-----FFLTTTEQALAV 163 (254)
T ss_pred -----C-------C-CCHHHHHHHHHHHHHHHHHH--------HHhcCCEEEEEECCcccCCC-----ChhcCHHHHHHH
Confidence 0 0 11244556667778887775 55555667777655332211 011112566777
Q ss_pred hhccCCCC
Q 012093 267 VKSIDAKH 274 (471)
Q Consensus 267 Ir~~Dp~~ 274 (471)
|+++++..
T Consensus 164 i~~v~~~~ 171 (254)
T TIGR03234 164 IDDVGREN 171 (254)
T ss_pred HHHhCCCC
Confidence 77776433
No 220
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.59 E-value=1.4e+02 Score=30.20 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+|++.+.+.|+..||+..+.. + .+.+.+.++.|++.|+.|...+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~--------------e--~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT--------------E--ADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--------------h--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 3789999999999999964321 1 23456788999999999988764
No 221
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=28.19 E-value=1e+03 Score=27.95 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=86.7
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 185 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~ 185 (471)
+.+++++.++.+++.|+.+==+|. |..|-. .-..-.+|++.|-....+++..++.|+++|.-++..-..-.+...|.
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwl--DidYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~ 275 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWM--DIDYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYD 275 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ehhhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHH
Confidence 577889999999999998655553 112210 00011355555556668889999999999876532111001111111
Q ss_pred h------hhhh-cCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCC-
Q 012093 186 K------WGKA-AGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD- 250 (471)
Q Consensus 186 ~------W~~~-~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~- 250 (471)
. |.+. .|.+. ...-.-|++|+.++.+.+..+.++.. |+ =..|.=+|||.....
T Consensus 276 eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~-----GV-------DG~W~DmnEPa~f~~~ 343 (978)
T PLN02763 276 SGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSN-----GV-------DGIWNDMNEPAVFKTV 343 (978)
T ss_pred hHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcC-----CC-------cEEEccCCCCccccCC
Confidence 0 1111 11110 00111377899999888888776542 11 123666888854210
Q ss_pred ----C---------------ChhHHHH-----HHHHHHHHhhccCC-CCEEEeccccc
Q 012093 251 ----P---------------SGDTLQS-----WIQEMAVYVKSIDA-KHLVEIGLEGF 283 (471)
Q Consensus 251 ----~---------------~g~~~~~-----w~~~~~~~Ir~~Dp-~~lV~~g~~g~ 283 (471)
+ ....+.+ +.+.+++.+++..| .|++.+.-.+|
T Consensus 344 ~~t~P~~~~h~g~~~~gG~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgf 401 (978)
T PLN02763 344 TKTMPETNIHRGDEELGGVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGF 401 (978)
T ss_pred cCCCCccccccCCcccCCccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEcccc
Confidence 0 0111222 34556677777666 47776654444
No 222
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=28.08 E-value=6.7e+02 Score=26.08 Aligned_cols=160 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC-hhhh
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG-KAQY 184 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG-~~~y 184 (471)
+.+.+.+.++.+++.|+-.==++. |..|.. ....-.+|++.+..+..+++.++++|+++++-++..-..... ...|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~i--D~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWI--DDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE---GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCccceec--cccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 478899999999999998666543 112211 001124567777788899999999999999887532111111 1123
Q ss_pred hhhhhhcCCCCCC---------------CCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC-
Q 012093 185 VKWGKAAGLNLTS---------------DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT- 248 (471)
Q Consensus 185 ~~W~~~~G~~~~~---------------~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~- 248 (471)
..... .|.-+.. .---+++|+.++.+.+.+++++.. ++- =..|.=+|||...
T Consensus 118 ~~~~~-~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv---dg~w~D~~E~~~~~ 185 (441)
T PF01055_consen 118 DEAKE-KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGV---DGWWLDFGEPSSFD 185 (441)
T ss_dssp HHHHH-TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST----SEEEEESTTTBSST
T ss_pred hhHhh-cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCC---ceEEeecCCccccc
Confidence 22111 1111000 011267899999999999888765 322 2347778899861
Q ss_pred ------CC---CC---hh-----HHHHHHHHHHHHhhccCC-CCEEEecc
Q 012093 249 ------SD---PS---GD-----TLQSWIQEMAVYVKSIDA-KHLVEIGL 280 (471)
Q Consensus 249 ------~~---~~---g~-----~~~~w~~~~~~~Ir~~Dp-~~lV~~g~ 280 (471)
.+ .. +. -...+.+...+.+++.++ .++++..-
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sR 235 (441)
T PF01055_consen 186 SNNTLPEDAVHHDGYSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSR 235 (441)
T ss_dssp TTBSBCTTEECTTECEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEES
T ss_pred ccccCcccceecCCCCchheeccccccchhhhhhhhhhccCCCCcceeec
Confidence 11 01 11 122345566777777554 56666543
No 223
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.89 E-value=5.1e+02 Score=29.99 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhcccccc
Q 012093 147 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 226 (471)
Q Consensus 147 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~t 226 (471)
+..++.|..+|+.|+++||+||-..+-. . |.|.+ .|. -...-..........+.++.|.+.
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~p~--~----p~y~~----t~~----fg~~g~~rs~a~~~~~~~~~~~~~----- 864 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIFPQ--S----PGYKN----TGS----FGRYGPRRSIAKKIIDSFKKMEKT----- 864 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCC--C----CCccc----cCc----ccccCcchhhHHHHHHHHHHHHhh-----
Confidence 4567889999999999999999887531 1 11221 000 000111223344556677777776
Q ss_pred ccccCCCCcEEEEEeecCCCCC
Q 012093 227 NLTYKNDPTIFAWELMNEPRCT 248 (471)
Q Consensus 227 g~~yk~~p~I~~wel~NEp~~~ 248 (471)
|.+ +.|++|--..
T Consensus 865 ---y~~------f~~~denk~g 877 (912)
T TIGR02171 865 ---YPH------FILFDENKDG 877 (912)
T ss_pred ---CCc------eEEEecCcCC
Confidence 776 6678887543
No 224
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=27.88 E-value=1.5e+02 Score=29.96 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.++++.+.+.|+..||+..+.. + .+...+.++.+++.|+.|...+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~--------------e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT--------------E--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------------h--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4789999999999999964321 1 23456888999999999987764
No 225
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.86 E-value=87 Score=32.07 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+|++.+.+.|+..||++..... .. .+..-+.=.++.++.+...++.|+++|+.|.+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd-~~-~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSD-LQ-IEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCH-HH-HHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 57888899999999999753211 00 00001122367788899999999999999887653
No 226
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.85 E-value=89 Score=32.02 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+|++.+.+.|+..||++...+. .. .+..-+.-.++.++.+...++.|+++|+.|.+.+.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSP-IH-LKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 57888999999999999653211 00 01111222366788899999999999999987764
No 227
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=27.78 E-value=1.4e+02 Score=30.81 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHc--CCEEEEecCC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY--KIRLILSLTN 173 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~--Gi~vil~l~~ 173 (471)
+.+.+-++.++++|...|-+|....+.-...+......-+...+.|..+.+.|+++ ||++.|+..+
T Consensus 115 ~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p 182 (382)
T TIGR02631 115 RKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKP 182 (382)
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 34567788999999999988753111000000000001133456777778888886 6999998653
No 228
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=27.60 E-value=4.9e+02 Score=25.15 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 115 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 115 ~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.+|++|++.|=+-| ++. ...|.|.. +.+.+=+..|.++||.+|+|.-
T Consensus 80 ~mLkd~G~~~viiGH-SER--------R~~f~Etd-~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 80 EMLKDLGVKYVIIGH-SER--------RQYFGETD-ELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred HHHHHCCCCEEEeCc-ccc--------cCccCcCH-HHHHHHHHHHHHCCCEEEEEcC
Confidence 358899999998843 211 11233221 2222333459999999999984
No 229
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=27.57 E-value=1.1e+02 Score=30.04 Aligned_cols=60 Identities=22% Similarity=0.095 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+++++.+.+.|++.|++..-.. +.. .+..-+.-.++.++.+.++++.|+++|+.|.+.+.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S-~~h-~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~ 136 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGS-LKH-CTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE 136 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCC-HHH-HHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 4689999999999999965211 000 00111122378899999999999999999988875
No 230
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.51 E-value=5.5e+02 Score=27.11 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
+..++.+.-+.+++.|+|.+=+- +..- ...+.--++.-.+..+-.+.+.-+.|||++.|++
T Consensus 181 n~qR~kDYAR~laSiGINg~v~N---NVNv--k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsi 241 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVLN---NVNV--KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSI 241 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEec---cccc--chhhhheechHhHHHHHHHHHHhhhccceEEEEe
Confidence 35788888899999999988762 2110 0011112455667888888999999999999997
No 231
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.22 E-value=5.3e+02 Score=24.61 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 169 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 169 (471)
-++..|+.++++|++.|-++......|. +..++++ .++.+-+.++++||.+.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSEE---TAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCHH---HHHHHHHHHHHcCCCEEE
Confidence 3668999999999999999764321111 1123333 345666888999998654
No 232
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.19 E-value=3.6e+02 Score=27.56 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=54.2
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCC-------EEEEeecc---CCCccccCCCC---CCCC-hH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLT-------VCRTWAFN---DGQWRALQTSP---SVYD-EE 148 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N-------~vR~~~~~---~~~~~~~~~~~---g~~~-~~ 148 (471)
+.+.+.+.|-+.- .+++.+.+.-+.+|+++-. ++|+..+- ...|..+-..| |.++ ++
T Consensus 52 d~rllvI~GPCSI---------~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~ 122 (353)
T PRK12755 52 DDRLLVVVGPCSI---------HDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEE 122 (353)
T ss_pred CCCeEEEeCCCCC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHH
Confidence 5677788888842 3455566666667666655 88875431 12243332122 5565 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 149 VFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 149 ~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.|..+.+++-...++||.++-++.+
T Consensus 123 GL~~~R~ll~~~~e~Glp~atE~ld 147 (353)
T PRK12755 123 GLRIARKLLLDLVELGLPLATEALD 147 (353)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecC
Confidence 8888888877799999999998865
No 233
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=27.10 E-value=1.8e+02 Score=28.51 Aligned_cols=58 Identities=5% Similarity=0.097 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChH------HHHHHHHHHHHHHHcCCEEEEecC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEE------VFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~------~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
..++..|+.++++|+.-|-=+. .+.--.|.|.+. .+++==++|.+|++.||.-+.-.+
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~NfP-------TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf 158 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNFP-------TVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF 158 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE-S--------GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-
T ss_pred CcHHHHHHHHHHhCCceEEECC-------cceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec
Confidence 5788999999999999776532 110011222110 111112578899999998765543
No 234
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=26.44 E-value=71 Score=22.79 Aligned_cols=19 Identities=21% Similarity=0.487 Sum_probs=14.4
Q ss_pred HHHHHHhhccCCCCEEEec
Q 012093 261 QEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 261 ~~~~~~Ir~~Dp~~lV~~g 279 (471)
.++.+.|+++||+..|++.
T Consensus 30 ~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 30 PKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHhCCCEEEEEE
Confidence 6788999999999999875
No 235
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.77 E-value=2e+02 Score=27.38 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+++++.+++.|+..||+....... + .+..-+.=.+..++.+-..++.|+++|+.+.+.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~-~-~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASET-H-SRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHH-H-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 578999999999999996532110 0 00000111245678888899999999999998874
No 236
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=25.37 E-value=1.2e+02 Score=29.57 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 112 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 112 ~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+++.+++.|++.||+..-... .. .+...+.=.++.++.+.+.++.|+++|+.|.+..
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWD-LH-VTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 6788899999999999542110 00 1111122236778899999999999999998753
No 237
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=25.36 E-value=2.1e+02 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.++++.+.+.|+..||+....+ ....+..+++.|+++|+.|.+.+.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s----------------~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCT----------------EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechh----------------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3778899999999999964311 123556788999999999988763
No 238
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.29 E-value=1.1e+02 Score=31.10 Aligned_cols=60 Identities=20% Similarity=0.026 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
..+|++.+.+.|+..|+++.-... .. .+.+-+.=.++.++.+.++++.|+++|++|...+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd-~h-~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASE-SF-SKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 568899999999999998652211 00 1111122247889999999999999999997555
No 239
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=25.24 E-value=1.6e+02 Score=31.42 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=33.9
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 170 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~ 170 (471)
.+.|+.|-+.|+|++|+ -|+.+. + ++.-++++.+=+.+++.|-.|=+-
T Consensus 20 ~e~l~~li~aG~nV~Rl-NfSHG~----------~-e~h~~~i~~vR~~~~~~~~~vaIl 67 (477)
T COG0469 20 EEMLEKLIEAGMNVVRL-NFSHGD----------H-EEHKKRIDNVREAAEKLGRPVAIL 67 (477)
T ss_pred HHHHHHHHHccCcEEEE-ecCCCC----------h-HHHHHHHHHHHHHHHHhCCceEEE
Confidence 46677888999999999 444332 2 455677787778888888766443
No 240
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=25.24 E-value=1.6e+02 Score=28.32 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=31.0
Q ss_pred HHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 115 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 115 ~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
..++++|++.|=+-|. +. + ..|+| .-+.+.+-+..|.++||.+|++.-
T Consensus 78 ~mL~d~G~~~viiGHS-ER---R-----~~f~E-td~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 78 EMLKDLGCKYVIIGHS-ER---R-----QYFGE-TDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHHHHTTESEEEESCH-HH---H-----HHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHhhCCEEEeccc-cc---c-----Ccccc-ccHHHHHHHHHHHHCCCEEEEEec
Confidence 4688999999988442 10 0 01221 124556677899999999999984
No 241
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=25.24 E-value=78 Score=30.08 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=40.0
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
....+.+.++|.+.|=+-++ |..+. ++. ....++.+.++++.|+++||+||++.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----~~~~~--~~~-~~~~~~~i~~v~~~~~~~gl~vIlE~ 132 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----YGALG--SGN-EDEVIEEIAAVVEECHKYGLKVILEP 132 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----HHHHH--TTH-HHHHHHHHHHHHHHHHTSEEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecc----ccccc--ccc-HHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 57788899999999998654 21111 122 35678899999999999999999994
No 242
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=25.10 E-value=32 Score=32.60 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=18.3
Q ss_pred cchhHhHHhhhhhhcccccccc
Q 012093 11 KSFFSLVIFTILIENSSWTVFG 32 (471)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (471)
.+-|..+|.+|+.|||.|...-
T Consensus 28 ~~~fevLV~aILsQqT~~~~v~ 49 (218)
T PRK13913 28 ALKFEALLGAVLTQNTKFEAVE 49 (218)
T ss_pred cCHHHHHHHHHHHhhhhHHHHH
Confidence 5678999999999999997543
No 243
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.01 E-value=1.1e+02 Score=31.41 Aligned_cols=59 Identities=12% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 171 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 171 (471)
.+|++.+.+.|+..||++..... .. .+..-+.-.++.++.+...++.|++.|+.|.+.+
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd-~h-~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSD-IH-IKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57788899999999999653211 00 1111122247889999999999999999998875
No 244
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=24.86 E-value=6.1e+02 Score=25.00 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhc
Q 012093 201 FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKS 269 (471)
Q Consensus 201 f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~ 269 (471)
...+++.++.|.+-+..++++ |+=+---+-||--+.+ ...+++..+++++.+.+++
T Consensus 86 ~~~~~~~R~~fi~siv~~l~~--------~~fDGidiDWE~P~~~-----~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 86 MASDPTARKAFINSSIKVARK--------YGFDGLDLDWEFPSSQ-----VEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred HhCCHHHHHHHHHHHHHHHHH--------hCCCceeecccCCCCh-----hHHHHHHHHHHHHHHHHHH
Confidence 356888999999988888887 5544445557742211 1246788888888888874
No 245
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=24.65 E-value=94 Score=29.62 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHH----HHHHcCCEEEEec
Q 012093 109 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVIS----EAKKYKIRLILSL 171 (471)
Q Consensus 109 ~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~----~a~~~Gi~vil~l 171 (471)
+-.+|+..|+..|+..|=+..|. | + |-..-+..++.+++++. .|.+.||++-+.+
T Consensus 12 r~~eDlekMa~sGI~~Vit~Ahd----P-~---~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vav 70 (254)
T COG1099 12 RGFEDLEKMALSGIREVITLAHD----P-Y---PMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAV 70 (254)
T ss_pred ccHHHHHHHHHhChhhhhhcccC----C-C---CcccHHHHHHHHHHHHccchhhHHhhCceeeEEe
Confidence 44589999999999988887652 2 1 22233445666666654 4999999998876
No 246
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=24.59 E-value=6e+02 Score=25.63 Aligned_cols=65 Identities=17% Similarity=0.345 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCC-----CCCChhHHHHHHHHHHHHhhccCCCCEEEe
Q 012093 204 HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-----SDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 278 (471)
Q Consensus 204 ~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~-----~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~ 278 (471)
+++.++.|.+-+..++++ |+=+---+-||--+.+... .....+++..+++++.+.+++ ..++++
T Consensus 88 ~~~~R~~Fi~si~~~~~~--------~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~---~~~ls~ 156 (345)
T cd02878 88 KPANRDTFANNVVNFVNK--------YNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS---GKSLSI 156 (345)
T ss_pred CHHHHHHHHHHHHHHHHH--------cCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc---CcEEEE
Confidence 788899998888888887 5544444557744333211 111245677788887777654 456665
Q ss_pred c
Q 012093 279 G 279 (471)
Q Consensus 279 g 279 (471)
.
T Consensus 157 a 157 (345)
T cd02878 157 A 157 (345)
T ss_pred E
Confidence 4
No 247
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=24.06 E-value=2.7e+02 Score=26.38 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc
Q 012093 114 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNW 175 (471)
Q Consensus 114 l~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w 175 (471)
.+...+.|.+.+=+....+ ..-+...+..|+++|++++++|.+.|
T Consensus 73 ~~ma~~aGAd~~tV~g~A~-----------------~~TI~~~i~~A~~~~~~v~iDl~~~~ 117 (217)
T COG0269 73 ARMAFEAGADWVTVLGAAD-----------------DATIKKAIKVAKEYGKEVQIDLIGVW 117 (217)
T ss_pred HHHHHHcCCCEEEEEecCC-----------------HHHHHHHHHHHHHcCCeEEEEeecCC
Confidence 3456789999998854321 23455778999999999999998765
No 248
>PLN03244 alpha-amylase; Provisional
Probab=23.87 E-value=72 Score=36.13 Aligned_cols=128 Identities=6% Similarity=0.032 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCcCcC--CChhhhh----hhhhh--cCCC--CCCCCCcCCCHHHHHHHHHHHHHH
Q 012093 150 FKALDFVISEAKKYKIRLILSLT-NNWDAY--GGKAQYV----KWGKA--AGLN--LTSDDEFFSHTTLKSYYKAHVKTV 218 (471)
Q Consensus 150 l~~lD~~l~~a~~~Gi~vil~l~-~~w~~~--gG~~~y~----~W~~~--~G~~--~~~~~~f~~~~~~~~~~~~~~~~l 218 (471)
.+.|.++|+.|.++||.|||++. |+.... .|...+. .|... .|.. .+.....+..+++++...+-++.-
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 34577899999999999999974 322111 1111100 00000 0100 001112345688888888888888
Q ss_pred HhccccccccccCCCCcEEEEEeecCCC-----CCCC-CChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 219 LNRVNTFTNLTYKNDPTIFAWELMNEPR-----CTSD-PSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 219 v~R~N~~tg~~yk~~p~I~~wel~NEp~-----~~~~-~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
++.. .+-|.++-.-.+++...-+.++. .... ........++..+...|++..|+.+ +++
T Consensus 520 leEy-hIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~i-tIA 584 (872)
T PLN03244 520 ITEY-QIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKII-TIA 584 (872)
T ss_pred HHHh-CcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeE-EEE
Confidence 8651 12233333333444433222110 0000 0013456678888889999999854 443
No 249
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=23.35 E-value=2.3e+02 Score=29.71 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccC-----CCcc---ccCCCCCCCC---hHHHHHHHHHHHHH-HHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFND-----GQWR---ALQTSPSVYD---EEVFKALDFVISEA-KKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~-----~~~~---~~~~~~g~~~---~~~l~~lD~~l~~a-~~~Gi~vil~l~ 172 (471)
-+.+++.|+.+++.|.|.|-+-.... ..|. .++-.|..+. +..++.+.++|..+ +++||..|.++.
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 46899999999999999998844321 1121 1111111111 23456677777777 589999999974
No 250
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=23.23 E-value=2.5e+02 Score=27.10 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 174 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 174 (471)
+..++.-+.....+|..-|-+.... ++.....+.+-....+.|.++.+.+.+.||+++++..|.
T Consensus 84 r~~v~~a~~ya~aLg~~~vh~mag~----~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 84 RLGVALAIEYATALGCKQVHCLAGI----PPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred HhHHHHHHHHHHHhCCCceeeeecC----CCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 4567778888889998866653211 001001112334567889999999999999999998875
No 251
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.07 E-value=1.4e+02 Score=28.16 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
...++.-++.+++.|+..+|++...+... .+..-+.-.++.++.+..+++.|+++|+.|.+.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~--~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLH--IRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHH--HHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHH--HHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 56677778888999999999965321100 00011222367788999999999999999977653
No 252
>PRK10426 alpha-glucosidase; Provisional
Probab=22.69 E-value=1.1e+03 Score=26.25 Aligned_cols=160 Identities=14% Similarity=0.160 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CC-------CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SP-------SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAY 178 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~-------g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~ 178 (471)
.+++++.++.+++.|+.+==+|. + .|..... .- -.+|++.+-....+++..++.|+++++-++..-..
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~l--d-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~- 295 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWA--Q-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLAS- 295 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--e-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCC-
Confidence 56788999999999988665554 1 2321100 00 13466777777889999999999999887432111
Q ss_pred CChhhhhhhhh------h-cCCCC-------CCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEE-EEeec
Q 012093 179 GGKAQYVKWGK------A-AGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFA-WELMN 243 (471)
Q Consensus 179 gG~~~y~~W~~------~-~G~~~-------~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~-wel~N 243 (471)
+.+.|..=.. . .|.+. ...---+++|+.++.+++.+++.+.. .+ |-+ |.=+|
T Consensus 296 -~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~--------~G----vdg~w~D~~ 362 (635)
T PRK10426 296 -DGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIG--------LG----CSGWMADFG 362 (635)
T ss_pred -CCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhh--------cC----CCEEeeeCC
Confidence 1122322100 0 11100 00112378999999999888654332 21 333 45578
Q ss_pred CCCCCCC-----CChh----H-HHHHHHHHHHHhhccCC-CCEEEeccccc
Q 012093 244 EPRCTSD-----PSGD----T-LQSWIQEMAVYVKSIDA-KHLVEIGLEGF 283 (471)
Q Consensus 244 Ep~~~~~-----~~g~----~-~~~w~~~~~~~Ir~~Dp-~~lV~~g~~g~ 283 (471)
|+-.... ..+. . ..-|.+..++.+++..+ .+++...-.++
T Consensus 363 E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~ 413 (635)
T PRK10426 363 EYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGY 413 (635)
T ss_pred CCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEcccc
Confidence 8532211 0111 1 12355566677777766 46665543344
No 253
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=22.67 E-value=5.7e+02 Score=23.06 Aligned_cols=92 Identities=13% Similarity=0.283 Sum_probs=54.3
Q ss_pred HHHHHHHc--CCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCC
Q 012093 156 VISEAKKY--KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 233 (471)
Q Consensus 156 ~l~~a~~~--Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~ 233 (471)
.+..+++. |++|++.+.. |.... ......++..++.+.+-+..++++ |+=+
T Consensus 54 ~i~~l~~~~~g~kv~~sigg-~~~~~------------------~~~~~~~~~~~~~f~~~~~~~v~~--------~~~D 106 (210)
T cd00598 54 ALEELASKKPGLKVLISIGG-WTDSS------------------PFTLASDPASRAAFANSLVSFLKT--------YGFD 106 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcC-CCCCC------------------CchhhcCHHHHHHHHHHHHHHHHH--------cCCC
Confidence 34455555 9999999842 21100 002356788888888888888887 6555
Q ss_pred CcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 234 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 234 p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
---+-||-...... .....+..+++++.+.+++. +.++++.
T Consensus 107 GidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a 147 (210)
T cd00598 107 GVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIA 147 (210)
T ss_pred ceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEE
Confidence 55555654332211 11356777777777666543 4566654
No 254
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=22.13 E-value=4.2e+02 Score=29.50 Aligned_cols=178 Identities=16% Similarity=0.202 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCEEEEecCCCcCcCCChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHH-HHHHHHHHhccccccccccCCC
Q 012093 155 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYY-KAHVKTVLNRVNTFTNLTYKND 233 (471)
Q Consensus 155 ~~l~~a~~~Gi~vil~l~~~w~~~gG~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~-~~~~~~lv~R~N~~tg~~yk~~ 233 (471)
.+++.|++++=-|.+... .|.. | .|... | ...-+.++.....| .+.+.-..+. ++
T Consensus 116 ~L~~eAKkrNP~ikl~~L-~W~~----P---gW~~~-g-----~~~~~~~~~~~a~Y~~~wl~ga~~~--------~g-- 171 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGL-PWGF----P---GWVGN-G-----WNWPYDNPQLTAYYVVSWLLGAKKT--------HG-- 171 (669)
T ss_dssp HHHHHHHHH-TT-EEEEE-ES-B--------GGGGT-T-----SS-TTSSHHHHHHHHHHHHHHHHHH--------H---
T ss_pred hhHHHHHhhCCCCeEEEe-ccCC----C---ccccC-C-----CCCcccchhhhhHHHHHHHHHHHHH--------hC--
Confidence 466888888644444432 2533 2 36542 1 11124455544443 3444333222 22
Q ss_pred CcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEeccccccCCCCCCCccCCCCcccccccchhhhhc-C
Q 012093 234 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNH-Q 312 (471)
Q Consensus 234 p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~-~ 312 (471)
..|-...++||-... .+|++.+.+.+.+.+-++.=.++..+.+.. + +.+...+. .
T Consensus 172 l~idYvg~~NEr~~~--------~~~ik~lr~~l~~~gy~~vkiva~D~~~~~------------~----~~~m~~D~~l 227 (669)
T PF02057_consen 172 LDIDYVGIWNERGFD--------VNYIKWLRKALNSNGYNKVKIVAADNNWES------------I----SDDMLSDPEL 227 (669)
T ss_dssp ----EE-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STT------------H----HHHHHH-HHH
T ss_pred CCceEechhhccCCC--------hhHHHHHHHHHhhccccceEEEEeCCCccc------------h----hhhhhcCHHH
Confidence 234445678998652 356677777777767665444443332110 1 11111110 1
Q ss_pred CCCceEEEEeccCCCccCCCChhHHHHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 012093 313 TLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLN 392 (471)
Q Consensus 313 ~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPviv~EfG~~~~~~g~s~~~r~~y~~~~~~~i~~ 392 (471)
...+|+++.| ||.... ...++. .+|||+-.|=+...+. ..+ ..- +..++..-
T Consensus 228 ~~avdvig~H-Y~~~~~-------------------~~~a~~-~~K~lW~SE~~s~~~~---~~g-~g~-~ar~ln~~-- 279 (669)
T PF02057_consen 228 RNAVDVIGYH-YPGTYS-------------------SKNAKL-TGKPLWSSEDYSTFNY---NVG-AGC-WARILNRN-- 279 (669)
T ss_dssp HHH--EEEEE-S-TT----------------------HHHHH-HT-EEEEEEEE-S-TT---HHH-HHH-HHHHHHHH--
T ss_pred HhcccEeccc-cCCCCc-------------------HHHHHH-hCCCeEEcCCcccccC---cCc-hHH-HHHHHHhh--
Confidence 2458999999 565321 011233 6999999997554432 111 111 22222211
Q ss_pred hhhcCCCccceeecccCC
Q 012093 393 STKKGGSGAGSLLWQLFP 410 (471)
Q Consensus 393 ~~~~~~~~~G~~~W~~~~ 410 (471)
++ . +.....++|.+..
T Consensus 280 yv-~-g~mT~~I~w~lVa 295 (669)
T PF02057_consen 280 YV-N-GRMTAYINWPLVA 295 (669)
T ss_dssp HH-H-H--SEEEEE-SEE
T ss_pred hh-c-cceEEEEeehhhh
Confidence 22 1 3367889998863
No 255
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=22.03 E-value=2.1e+02 Score=27.34 Aligned_cols=59 Identities=17% Similarity=0.046 Sum_probs=38.6
Q ss_pred EEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcC
Q 012093 88 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYK 164 (471)
Q Consensus 88 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~G 164 (471)
+++|-+..+.. ...+.|++|++..+++|+.-|=+-.. ...|..| +.++.+++++|.-.+
T Consensus 59 RPRgGdFvY~~------~E~~iM~~DI~~~~~lG~~GVV~G~l---------t~dg~iD---~~~le~Li~aA~gL~ 117 (241)
T COG3142 59 RPRGGDFVYSD------DELEIMLEDIRLARELGVQGVVLGAL---------TADGNID---MPRLEKLIEAAGGLG 117 (241)
T ss_pred ecCCCCcccCh------HHHHHHHHHHHHHHHcCCCcEEEeee---------cCCCccC---HHHHHHHHHHccCCc
Confidence 45666644331 12578999999999999998877432 2235666 455566777777443
No 256
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=21.97 E-value=7.1e+02 Score=23.89 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=32.7
Q ss_pred HHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 115 HQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 115 ~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
+.++++|++.|=+-| ++. ...|+|. -+.+..-+..|.++||.+|+|.-
T Consensus 78 ~mL~d~G~~~viiGH-SER--------R~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 78 EMLKDAGAKYVIIGH-SER--------RQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred HHHHHcCCCEEEeCc-ccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 358899999998843 221 1123222 34556667899999999999974
No 257
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=21.68 E-value=5.4e+02 Score=25.35 Aligned_cols=63 Identities=10% Similarity=0.237 Sum_probs=43.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEEec
Q 012093 201 FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 279 (471)
Q Consensus 201 f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~~g 279 (471)
+..++..++.+.+-+..++++ ++=+--.+-||-.+. ...+.+..+++++.+.+++. +..+++.
T Consensus 82 ~l~~~~~R~~fi~~iv~~~~~--------~~~dGidiD~E~~~~------~d~~~~~~fl~eL~~~l~~~--~~~lsv~ 144 (298)
T cd06549 82 LLADPSARAKFIANIAAYLER--------NQADGIVLDFEELPA------DDLPKYVAFLSELRRRLPAQ--GKQLTVT 144 (298)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--------hCCCCEEEecCCCCh------hHHHHHHHHHHHHHHHhhhc--CcEEEEE
Confidence 567899999998888888887 554444555663211 12467888999999888875 3455543
No 258
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.48 E-value=5.5e+02 Score=26.84 Aligned_cols=89 Identities=24% Similarity=0.296 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHH---------HHHHHHHHHHHcCCEEE-EecCCCcCcCC
Q 012093 110 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK---------ALDFVISEAKKYKIRLI-LSLTNNWDAYG 179 (471)
Q Consensus 110 ~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~---------~lD~~l~~a~~~Gi~vi-l~l~~~w~~~g 179 (471)
-.+-|+.+++.|+| |++..- | .||++.++ .....++.+++.|+.-| +||. ||
T Consensus 136 ~~e~~~~l~~~GvN--RiSlGV-------Q----sf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLI-----yg 197 (416)
T COG0635 136 EAEKFKALKEAGVN--RISLGV-------Q----SFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLI-----YG 197 (416)
T ss_pred CHHHHHHHHHcCCC--EEEecc-------c----cCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEee-----cC
Confidence 34668999999999 986531 1 22333332 23466788888888644 5654 11
Q ss_pred ChhhhhhhhhhcCCCCCCCCCcCCCHHHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCC
Q 012093 180 GKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTS 249 (471)
Q Consensus 180 G~~~y~~W~~~~G~~~~~~~~f~~~~~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~ 249 (471)
.| + +..+.+++-++.+++ ++ -+.|-.+.|.-||....
T Consensus 198 -lP---------~-------------QT~~~~~~~l~~a~~---------l~-pdhis~y~L~~~p~t~~ 234 (416)
T COG0635 198 -LP---------G-------------QTLESLKEDLEQALE---------LG-PDHLSLYSLAIEPGTKF 234 (416)
T ss_pred -CC---------C-------------CCHHHHHHHHHHHHh---------CC-CCEEEEeeeecCCCchh
Confidence 11 0 113445666667776 33 44688899999998653
No 259
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=21.27 E-value=2e+02 Score=27.15 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
......++.+.+.|++.|=+-.. .+. . -..+.++.+.++.++|+++|+.+|++.+
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~-~~~---~------~~~~~~~~i~~v~~~~~~~g~~~iie~~ 130 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVY-VGS---E------EEREMLEELARVAAEAHKYGLPLIAWMY 130 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEe-cCC---c------hHHHHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 44455678888999997633111 000 0 1356788899999999999999999764
No 260
>TIGR03586 PseI pseudaminic acid synthase.
Probab=20.78 E-value=3.9e+02 Score=27.05 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHhCCCCEEEEeeccCCC-----c-cccCCCCCCCCh----HH-------HHHHHHHHHHHHHcCCEEE
Q 012093 106 TRGKVSELFHQASSAGLTVCRTWAFNDGQ-----W-RALQTSPSVYDE----EV-------FKALDFVISEAKKYKIRLI 168 (471)
Q Consensus 106 ~~~~~~~dl~~mk~~G~N~vR~~~~~~~~-----~-~~~~~~~g~~~~----~~-------l~~lD~~l~~a~~~Gi~vi 168 (471)
+.+...+.++.+++.|.++|++-.|.... . ..+...++.|+. +. ++.+.++.+.|+++||.++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~ 94 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF 94 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence 47888999999999999999995542110 0 000001112211 12 2333467788999999999
Q ss_pred EecCC
Q 012093 169 LSLTN 173 (471)
Q Consensus 169 l~l~~ 173 (471)
-+.++
T Consensus 95 stpfd 99 (327)
T TIGR03586 95 SSPFD 99 (327)
T ss_pred EccCC
Confidence 99874
No 261
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.52 E-value=2e+02 Score=28.18 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 012093 108 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 169 (471)
Q Consensus 108 ~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 169 (471)
..+-.+++.+-++|..+|=+.+|.- +....++++.+-++.+.|+++||-+|.
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~G----------s~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFIG----------SEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEecC----------CHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3444556678899999999976631 123467899999999999999999887
No 262
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=20.47 E-value=4.8e+02 Score=24.74 Aligned_cols=64 Identities=20% Similarity=0.076 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhCCCCEEEEeeccCCCccccCC-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 012093 107 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLT 172 (471)
Q Consensus 107 ~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 172 (471)
.+.+++-++.++++|+..|-+..... +....+ .+..-.+...+.+.++.+.|+++|+.+-++.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~ 147 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLG--AGADDPDSPEEARERWAEALEELAEIAEELGIGLALENH 147 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccC--CcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeec
Confidence 45566788899999999888754211 110110 11111256788999999999999999999863
No 263
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=20.47 E-value=5.7e+02 Score=26.06 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCEEEEEEEeeccchhhhccCCCchhHHHHHHHHHHhCCCC-------EEEEeecc---CCCccccCCCC---CCCC-hH
Q 012093 83 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLT-------VCRTWAFN---DGQWRALQTSP---SVYD-EE 148 (471)
Q Consensus 83 nGkp~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~mk~~G~N-------~vR~~~~~---~~~~~~~~~~~---g~~~-~~ 148 (471)
|.+.+.+.|-+.- .+++.+.+.-+.+|++|.. ++|+..+- ...|..+-..| |.|+ ++
T Consensus 46 d~rllvIvGPCSI---------hd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~ 116 (344)
T TIGR00034 46 DDRLLVVIGPCSI---------HDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINH 116 (344)
T ss_pred CCCeEEEecCCCC---------CCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHH
Confidence 6677788888842 3456666677777777766 99986541 12354333233 3444 56
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCC
Q 012093 149 VFKALDFVISEAKKYKIRLILSLTN 173 (471)
Q Consensus 149 ~l~~lD~~l~~a~~~Gi~vil~l~~ 173 (471)
.|..+.+++-...+.||-+.-++.+
T Consensus 117 GL~~~R~ll~~i~~~GlPvatE~ld 141 (344)
T TIGR00034 117 GLRIARKLLLDLVNLGLPIAGEFLD 141 (344)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecC
Confidence 7777777766679999999998865
No 264
>PLN00061 photosystem II protein Psb27; Provisional
Probab=20.26 E-value=2.2e+02 Score=25.12 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhccccccccccCCCCcEEEEEeecCCCCCCCCChhHHHHHHHHHHHHhhccCCCCEEE
Q 012093 206 TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 277 (471)
Q Consensus 206 ~~~~~~~~~~~~lv~R~N~~tg~~yk~~p~I~~wel~NEp~~~~~~~g~~~~~w~~~~~~~Ir~~Dp~~lV~ 277 (471)
+.++.-++.|+..+.| |+..|.|- .+... ..++.-++.++.+-++..|++|+.
T Consensus 83 ~aa~~Ake~IndYisr--------yR~~~~V~-----gl~Sf------ttMqtALnsLAghYssyGpnrPLP 135 (150)
T PLN00061 83 RTADAAKESIREYLGN--------WRGQKTVA-----EEESY------VELEKAIRSLASFYSKAGPSAPLP 135 (150)
T ss_pred HHHHHHHHHHHHHHHH--------hcCCcccc-----ccchH------HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3456667888888888 99998773 33332 467777788888888888888863
No 265
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=20.26 E-value=3.9e+02 Score=29.68 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHHhCCCCEEEEeeccCCCcc--------------------ccCC------C--CCCCChHHHHHHHHH
Q 012093 105 STRGKVSELFHQASSAGLTVCRTWAFNDGQWR--------------------ALQT------S--PSVYDEEVFKALDFV 156 (471)
Q Consensus 105 ~~~~~~~~dl~~mk~~G~N~vR~~~~~~~~~~--------------------~~~~------~--~g~~~~~~l~~lD~~ 156 (471)
.+.+.+.+.++.|++.++|.+-++.-.|..|. +..| + .|.|+++. +..+
T Consensus 275 ~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytqd~---~rel 351 (732)
T COG3525 275 HSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQDD---IREL 351 (732)
T ss_pred CCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccHHH---HHHH
Confidence 46788999999999999999998554443341 0001 1 14566544 4567
Q ss_pred HHHHHHcCCEEEEecC
Q 012093 157 ISEAKKYKIRLILSLT 172 (471)
Q Consensus 157 l~~a~~~Gi~vil~l~ 172 (471)
++-|..++|.||.+..
T Consensus 352 v~yAsar~ItviPeiD 367 (732)
T COG3525 352 VAYASARQITVIPEID 367 (732)
T ss_pred HHHHhhcCceecCCcC
Confidence 8999999999999873
No 266
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.25 E-value=1.8e+02 Score=30.68 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCCCEEEEeeccCCCccccCCCCCCCChHHH---------HHHHHHHHHHHHcC-CEEEEecC
Q 012093 111 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF---------KALDFVISEAKKYK-IRLILSLT 172 (471)
Q Consensus 111 ~~dl~~mk~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l---------~~lD~~l~~a~~~G-i~vil~l~ 172 (471)
++.++.|++.|+|-|-+-+ | .++++.+ +.+.+.++.++++| +.|.++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGV---------Q----Sf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI 221 (449)
T PRK09058 163 DEKADAALDAGANRFSIGV---------Q----SFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLI 221 (449)
T ss_pred HHHHHHHHHcCCCEEEecC---------C----cCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5678899999999444421 1 1222222 23345678888999 77888875
Done!