BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012096
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/487 (28%), Positives = 218/487 (44%), Gaps = 40/487 (8%)
Query: 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHG-----NHN 65
R H+V +PYP +GHINP+ L KLL R ITFV TE + G
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRG--FHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 66 NIRFETIPN-VIPSELVR--ARDFLAFVESVSTKMEAPFEKVLDFLQ--VEAPVVSAIIV 120
+ FE+IP+ + P E ++D +SV P+ ++L L P V+ ++
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 121 DTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVE-----LSERGEEV 175
D +++ + +P ++S SA HF V+ G P + + E
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETK 184
Query: 176 VDYIPGLASTKLADLPTIFYGSGRQ--TLQRALESVSKVSKAQCLLLSSVYELEAKVNDT 233
VD+IPGL + +L D+ + L+ +E +V+K +LL++ ELE+ V +
Sbjct: 185 VDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINA 244
Query: 234 LKAKFPFPVYPIGPTIPYFEI--KXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXXXX 291
L + P +YPIGP + + E WL+S+
Sbjct: 245 LSSTIP-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFG 303
Query: 292 XXXXXXXXQMDEIVAGVRNSGVRFFWVSRGD---------TSWFKDGCVDRGIVVPWCDQ 342
Q+ E G+ N F W+ R D +S F + DRG++ WC Q
Sbjct: 304 STTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQ 363
Query: 343 LEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKP 402
+VL H SIGGF THCG NST E+ AGVPML +P DQ + + I +W+IG ++
Sbjct: 364 DKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEI--- 420
Query: 403 EIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462
++ V R+E+ +L+ + D+ K M ++A E+++ +E G S N + +
Sbjct: 421 ----DTNVKREELAKLINEV--IAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVI 474
Query: 463 NDISLAH 469
D+ L
Sbjct: 475 KDVLLKQ 481
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 233/484 (48%), Gaps = 47/484 (9%)
Query: 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFIT-FVVTEEWL----SFIGSG 60
M + ++ +P PG GH+ + KLL + + N++IT F + + S+I S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 61 HGNHNNIRFETIPNV--IPSELVRARDF--LAFVESVSTKMEAPFEKVLDFLQVEAPVVS 116
+ I+ +P V P EL+++ +F L F+ES+ ++A + +L + V
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL------SNKVV 116
Query: 117 AIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFP--VELSERGEE 174
+++D F +DVGN IP F + + S+ L ++N + S+R +
Sbjct: 117 GLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM----LSLKNRQIEEVFDDSDRDHQ 172
Query: 175 VVDYIPGLASTKLAD-LP-TIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVND 232
+++ IPG+++ ++ LP F G L + +K +++++ +LE D
Sbjct: 173 LLN-IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKG--IIVNTFSDLEQSSID 229
Query: 233 TL---KAKFPFPVYPIGPTIPYFEIKXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXX 289
L K P P+Y +GP + + D WLD QPD
Sbjct: 230 ALYDHDEKIP-PIYAVGPLL------DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 290 XXXXXXXXX-XQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVD------RGIVVPWCDQ 342
Q+ EI G+++SGVRF W + + F +G ++ +G++ W Q
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 343 LEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKP 402
+EVL H +IGGF +HCG NS LE+ + GVP+LT+PI +Q N+ +V++W +G ++
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 403 EIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462
+V +EI + +K MD ++ + K+ +E++E+ + AV + GSS+ + +
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
Query: 463 NDIS 466
+DI+
Sbjct: 459 DDIT 462
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 159 bits (401), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 128/484 (26%), Positives = 233/484 (48%), Gaps = 47/484 (9%)
Query: 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFIT-FVVTEEWL----SFIGSG 60
M + ++ +P PG GH+ + KLL + + N++IT F + + S+I S
Sbjct: 3 MSDINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV 62
Query: 61 HGNHNNIRFETIPNV--IPSELVRARDF--LAFVESVSTKMEAPFEKVLDFLQVEAPVVS 116
+ I+ +P V P EL+++ +F L F+ES+ ++A + +L + V
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL------SNKVV 116
Query: 117 AIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFP--VELSERGEE 174
+++D F +DVGN IP F + + S+ L ++N + S+R +
Sbjct: 117 GLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLM----LSLKNRQIEEVFDDSDRDHQ 172
Query: 175 VVDYIPGLASTKLAD-LP-TIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVND 232
+++ IPG+++ ++ LP F G L + +K +++++ +LE D
Sbjct: 173 LLN-IPGISNQVPSNVLPDACFNKDGGYIAYYKLAERFRDTKG--IIVNTFSDLEQSSID 229
Query: 233 TL---KAKFPFPVYPIGPTIPYFEIKXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXX 289
L K P P+Y +GP + + D WLD QPD
Sbjct: 230 ALYDHDEKIP-PIYAVGPLL------DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLC 282
Query: 290 XXXXXXXXX-XQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVD------RGIVVPWCDQ 342
Q+ EI G+++SGVRF W + + F +G ++ +G++ W Q
Sbjct: 283 FGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQ 342
Query: 343 LEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKP 402
+EVL H +IGGF +HCG NS LE+ + GVP+LT+PI +Q N+ +V++W +G ++
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 403 EIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462
+V +EI + +K MD ++ + K+ +E++E+ + AV + GSS+ + +
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDS----IVHKKVQEMKEMSRNAVVDGGSSLISVGKLI 458
Query: 463 NDIS 466
+DI+
Sbjct: 459 DDIT 462
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/477 (24%), Positives = 202/477 (42%), Gaps = 58/477 (12%)
Query: 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFE 70
+ H+ +P PG GH+ P++ K LV + + +TFV+ E G + +
Sbjct: 5 KTPHVAIIPSPGMGHLIPLVEFAKRLVHLH-GLTVTFVIAGE-----GPPSKAQRTV-LD 57
Query: 71 TIPNVIPSELVRARDFLAFVESVS---------TKMEAPFEKVLDFLQVEAPVVSAIIVD 121
++P+ I S + D S T+ KV D + +A++VD
Sbjct: 58 SLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVD 117
Query: 122 TFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERGEEVVDYIPG 181
F A DV ++P F+ +A++ S F H L + E E E ++ +PG
Sbjct: 118 LFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET--VSCEFRELTEPLM--LPG 173
Query: 182 LASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKF--P 239
D + L + + +A+ +L+++ +ELE L+
Sbjct: 174 CVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDK 233
Query: 240 FPVYPIGPTIPYFEIKXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXXXXXXXXXXXX 299
PVYP+GP + E WLD+QP
Sbjct: 234 PPVYPVGPLV---------NIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCE 284
Query: 300 QMDEIVAGVRNSGVRFFWVSR-----GDTSWFK----------------DGCVDRGIVVP 338
Q++E+ G+ +S RF WV R ++S+F + RG V+P
Sbjct: 285 QLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIP 344
Query: 339 -WCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGW 397
W Q +VL H S GGF THCG NSTLE+ +G+P++ +P+ +Q N+ L+ ED +
Sbjct: 345 FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL 404
Query: 398 KVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSS 454
+P G + LV R+E+ +VK M+ +E K + + +E++E + ++G+S
Sbjct: 405 ---RPRAGDDGLVRREEVARVVKGLME--GEEGKGVRNKMKELKEAACRVLKDDGTS 456
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/480 (22%), Positives = 194/480 (40%), Gaps = 48/480 (10%)
Query: 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS--FIGSGHGN 63
M T H+ L +P H P++ + + L + P+ +F T + + F S H
Sbjct: 1 MSQTTTNPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTM 60
Query: 64 HNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEK--VLDFLQVEAPVVSAIIVD 121
NI+ I + +P V A +E + F + V+ + PV S ++ D
Sbjct: 61 QCNIKSYDISDGVPEGYVFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPV-SCLVAD 119
Query: 122 TFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERGEEVVDYIPG 181
F+ +A D+ + FW+ + S + + + + + R +E++++IPG
Sbjct: 120 AFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVS-GIQGREDELLNFIPG 178
Query: 182 LASTKLADLPT-IFYGSGRQTLQRALESVSKV-SKAQCLLLSSVYELEAKVNDTLKAKF- 238
++ + DL I +G+ R L + +V KA + ++S EL+ + + LK+K
Sbjct: 179 MSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLK 238
Query: 239 ------PFPVYPIGPTIPYFEIKXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXXXXX 292
PF + P +P WL +
Sbjct: 239 TYLNIGPFNLITPPPVVP------------------NTTGCLQWLKERKPTSVVYISFGT 280
Query: 293 XXXXXXXQMDEIVAGVRNSGVRFFWVSRGDT-----SWFKDGCVDRGIVVPWCDQLEVLC 347
++ + + S V F W R F + G+VVPW Q EVL
Sbjct: 281 VTTPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLA 340
Query: 348 HSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSE 407
H ++G F THCG NS E+ GVP++ P DQ N +++ + +IG +++
Sbjct: 341 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400
Query: 408 SLVT-RDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466
L++ D+I L+ ++ K + + R ++E AV GSS NF ++ +S
Sbjct: 401 GLMSCFDQI---------LSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 451
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/476 (20%), Positives = 188/476 (39%), Gaps = 56/476 (11%)
Query: 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFIT-----------FVVTEEWLSFIGSG 60
+ H+ L +P H P+++L K + + P V + F + E+L
Sbjct: 13 LLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLP----- 67
Query: 61 HGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLDFLQVE-APVVSAII 119
NI++ + + +P V + + + M+ F+ V+D E ++ ++
Sbjct: 68 -----NIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLV 122
Query: 120 VDTFLAWAVDVGNRRNIPVASFWSMSA-SLFSVFHHFELLVQNGHFPVELSERGEEVVDY 178
D F + D+ + W+ SL + H + L++ E+ + + +D
Sbjct: 123 TDAFFWFGADLAEEMHAKWVPLWTAGPHSLLT--HVYTDLIREKTGSKEVHDV--KSIDV 178
Query: 179 IPGLASTKLADLPTIFYGSGRQTLQRALESVS-KVSKAQCLLLSSVYELEAKVNDTLKAK 237
+PG K +DLP L + ++ +A + ++S + + + L +K
Sbjct: 179 LPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSK 238
Query: 238 FPF--PVYPIGPTIPYFEIKXXXXXXXXXXXXXEPDNYFHWLDSQPDXXXXXXXXXXXXX 295
F V P T P ++ + WLD +
Sbjct: 239 FKLLLNVGPFNLTTPQRKVS-------------DEHGCLEWLDQHENSSVVYISFGSVVT 285
Query: 296 XXXXQMDEIVAGVRNSGVRFFWVSRGDTS-----WFKDGCVDRGIVVPWCDQLEVLCHSS 350
++ + + G F W RGD F + +G +V W Q+E+L HSS
Sbjct: 286 PPPHELTALAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSS 345
Query: 351 IGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLV 410
+G F TH G NS LE GVPM++ P DQ N+ L +IG V + ES+
Sbjct: 346 VGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIK 405
Query: 411 TRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466
E+T +++++ M ++ +++E +AV +NG+S +F + ++
Sbjct: 406 KALELT--------MSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 339 WCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWK 398
W QL++L +S F TH G+ ST+EA VPM+ P + +Q N++ IVE +G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE-LGLGRH 368
Query: 399 VKKPEIGSESL 409
+ + ++ +E L
Sbjct: 369 IPRDQVTAEKL 379
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 DHSRMKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57
+H T R HI PG GH+NP + + + LV+R V ++ +T+E+ + +
Sbjct: 4 EHRSASVTPR--HISFFNIPGHGHVNPSLGIVQELVARGHRV--SYAITDEFAAQV 55
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 339 WCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPN 385
W Q ++L H F TH G N EA Y G+P + P+ DQ N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 17/119 (14%)
Query: 339 WCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWK 398
W QL +L + + F TH G + E PM+ P +DQ N+ ++ G
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 399 VKKPEIGSESLVTRDEITELVKR-FMDLNNDERKAMSKRAREVQ-EICQEAVAENGSSI 455
V + L T + +L++ + L +D +++R R +Q E+ QE + +
Sbjct: 343 VAR------KLATEEATADLLRETALALVDDPE--VARRLRRIQAEMAQEGGTRRAADL 393
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 339 WCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFP 377
W Q +L H + H G +TL A AGVP L+FP
Sbjct: 299 WVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
1.8 A Resolution
Length = 107
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 384 PNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLN 426
PN +I D I + +PE G++++ + DE+ E ++ F+ LN
Sbjct: 30 PNFLVIHPDECIDCALCEPECGAQAIFSEDEVPEDMQEFIQLN 72
>pdb|3QKW|A Chain A, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|B Chain B, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|C Chain C, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
pdb|3QKW|D Chain D, Structure Of Streptococcus Parasangunini Gtf3
Glycosyltransferase
Length = 332
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 369 AGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE--IGSESLVTRDEITELVKRFMDLN 426
AG+P+ I+ + + N +LI E+ +GW VK E I V DE ELVK N
Sbjct: 255 AGIPV----IVQEGIANQELI-ENNGLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFN 309
Query: 427 NDERKAMSKRAREVQEICQ 445
RK R + + Q
Sbjct: 310 PILRKGFFTRRLLTESVFQ 328
>pdb|3RHZ|A Chain A, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
pdb|3RHZ|B Chain B, Structure And Functional Analysis Of A New Subfamily Of
Glycosyltransferases Required For Glycosylation Of
Serine-Rich Streptococcal Adhesions
Length = 339
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 369 AGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE--IGSESLVTRDEITELVKRFMDLN 426
AG+P+ I+ + + N +LI E+ +GW VK E I V DE ELVK N
Sbjct: 263 AGIPV----IVQEGIANQELI-ENNGLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFN 317
Query: 427 NDERKAMSKRAREVQEICQ 445
RK R + + Q
Sbjct: 318 PILRKGFFTRRLLTESVFQ 336
>pdb|2CG5|B Chain B, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 91
Score = 28.9 bits (63), Expect = 6.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 199 RQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFP 241
RQTL+R L V V + + L L + EL +K ++ + P P
Sbjct: 47 RQTLERELNLVLSVREVRQLTLRKLQELSSKADEASELACPTP 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,089,598
Number of Sequences: 62578
Number of extensions: 498306
Number of successful extensions: 1191
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 22
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)