Query 012096
Match_columns 471
No_of_seqs 136 out of 1240
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02448 UDP-glycosyltransfera 100.0 4.4E-66 9.6E-71 516.4 44.8 452 7-468 5-458 (459)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.4E-65 3E-70 507.3 45.1 437 6-467 1-450 (451)
3 PLN02555 limonoid glucosyltran 100.0 8.6E-65 1.9E-69 503.3 45.1 448 6-468 1-470 (480)
4 PLN02562 UDP-glycosyltransfera 100.0 2.5E-64 5.5E-69 499.9 43.6 430 13-466 7-448 (448)
5 PLN02173 UDP-glucosyl transfer 100.0 1.6E-63 3.5E-68 490.2 44.1 430 11-466 4-447 (449)
6 PLN02152 indole-3-acetate beta 100.0 2.9E-63 6.2E-68 489.2 42.5 429 12-465 3-454 (455)
7 PLN02992 coniferyl-alcohol glu 100.0 3E-63 6.5E-68 490.8 42.5 426 12-467 5-469 (481)
8 PLN02210 UDP-glucosyl transfer 100.0 5.1E-63 1.1E-67 491.0 43.8 438 9-466 5-454 (456)
9 PLN02207 UDP-glycosyltransfera 100.0 4.9E-63 1.1E-67 488.5 43.3 438 12-467 3-465 (468)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 9.6E-63 2.1E-67 490.4 42.6 441 10-468 7-472 (477)
11 PLN02554 UDP-glycosyltransfera 100.0 2.7E-62 5.9E-67 490.8 42.4 437 12-468 2-479 (481)
12 PLN03015 UDP-glucosyl transfer 100.0 5.1E-62 1.1E-66 479.2 42.0 433 11-466 2-467 (470)
13 PLN00164 glucosyltransferase; 100.0 1.1E-61 2.4E-66 484.5 43.4 437 12-469 3-475 (480)
14 PLN02534 UDP-glycosyltransfera 100.0 1.9E-61 4.2E-66 479.9 41.6 444 11-468 7-487 (491)
15 PLN03004 UDP-glycosyltransfera 100.0 3.5E-61 7.5E-66 473.9 40.6 422 12-456 3-450 (451)
16 PLN02208 glycosyltransferase f 100.0 1.1E-60 2.3E-65 471.3 41.5 413 12-468 4-440 (442)
17 PLN03007 UDP-glucosyltransfera 100.0 7.1E-61 1.5E-65 481.3 41.0 438 11-467 4-480 (482)
18 PLN02167 UDP-glycosyltransfera 100.0 2.2E-60 4.8E-65 476.3 42.3 442 11-469 2-474 (475)
19 PLN02670 transferase, transfer 100.0 2.6E-60 5.6E-65 469.6 40.7 437 11-468 5-466 (472)
20 PLN02764 glycosyltransferase f 100.0 5.7E-60 1.2E-64 463.4 41.4 414 12-467 5-445 (453)
21 PLN00414 glycosyltransferase f 100.0 1.3E-59 2.8E-64 464.1 40.2 413 12-468 4-441 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 7.9E-51 1.7E-55 409.1 34.0 398 13-466 21-465 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.4E-52 3E-57 429.2 4.8 376 14-447 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.8E-42 3.9E-47 343.6 32.3 374 18-463 1-388 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 6.3E-43 1.4E-47 348.4 25.2 364 13-446 1-387 (401)
26 COG1819 Glycosyl transferases, 100.0 2.9E-42 6.2E-47 338.1 20.8 394 12-468 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.4E-40 7.3E-45 337.8 26.6 386 12-447 5-439 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.1E-28 4.6E-33 237.1 24.0 319 12-439 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.3E-24 2.8E-29 209.7 25.1 306 13-422 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.2E-23 2.6E-28 201.4 26.5 312 13-425 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 6.8E-22 1.5E-26 190.5 24.9 122 283-425 188-314 (321)
32 PRK00726 murG undecaprenyldiph 99.8 7.2E-19 1.6E-23 172.5 28.2 341 12-465 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.2E-17 4.9E-22 161.5 25.0 312 14-425 1-324 (350)
34 TIGR01133 murG undecaprenyldip 99.7 2E-15 4.4E-20 147.6 26.2 304 13-425 1-321 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 2.8E-15 6E-20 147.7 23.1 346 13-462 6-383 (385)
36 PRK13609 diacylglycerol glucos 99.7 9.4E-15 2E-19 144.6 23.5 162 282-467 201-371 (380)
37 COG4671 Predicted glycosyl tra 99.7 8.8E-15 1.9E-19 133.8 19.7 333 10-425 7-365 (400)
38 TIGR03590 PseG pseudaminic aci 99.6 7.6E-15 1.6E-19 137.9 17.3 101 284-389 171-279 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 4.3E-14 9.2E-19 140.0 21.0 170 282-469 185-378 (380)
40 PRK13608 diacylglycerol glucos 99.6 2.6E-13 5.6E-18 134.4 21.8 162 282-467 201-371 (391)
41 TIGR03492 conserved hypothetic 99.6 6.6E-13 1.4E-17 130.9 23.0 352 22-462 6-393 (396)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 1.2E-15 2.7E-20 132.4 1.4 132 285-425 1-144 (167)
43 PLN02605 monogalactosyldiacylg 99.4 1.8E-11 3.9E-16 121.1 22.9 132 281-425 204-347 (382)
44 cd03814 GT1_like_2 This family 99.4 2.5E-09 5.3E-14 104.6 32.1 156 285-464 198-362 (364)
45 PF03033 Glyco_transf_28: Glyc 99.4 8.7E-13 1.9E-17 110.8 6.4 126 15-147 1-133 (139)
46 cd03823 GT1_ExpE7_like This fa 99.3 1.9E-08 4.1E-13 98.0 30.9 124 284-425 191-329 (359)
47 cd03818 GT1_ExpC_like This fam 99.2 2.7E-08 5.9E-13 99.0 31.5 332 14-425 1-366 (396)
48 PLN02871 UDP-sulfoquinovose:DA 99.2 5.2E-08 1.1E-12 99.1 30.9 123 285-425 264-400 (465)
49 COG3980 spsG Spore coat polysa 99.2 1.3E-09 2.8E-14 97.3 16.5 142 285-444 160-307 (318)
50 cd03808 GT1_cap1E_like This fa 99.2 7.9E-08 1.7E-12 93.3 30.4 307 14-425 1-329 (359)
51 cd03794 GT1_wbuB_like This fam 99.2 3.9E-08 8.5E-13 96.7 28.0 333 14-425 1-365 (394)
52 cd03817 GT1_UGDG_like This fam 99.2 6.6E-08 1.4E-12 94.6 29.3 142 285-443 203-360 (374)
53 cd03800 GT1_Sucrose_synthase T 99.2 1.1E-07 2.3E-12 94.6 31.0 322 23-425 21-368 (398)
54 cd03801 GT1_YqgM_like This fam 99.1 1.8E-07 3.8E-12 91.0 29.6 81 330-425 254-341 (374)
55 cd03825 GT1_wcfI_like This fam 99.1 3.2E-07 6.9E-12 90.0 30.0 81 330-425 242-330 (365)
56 cd04962 GT1_like_5 This family 99.1 3.1E-07 6.7E-12 90.4 29.0 124 285-425 198-336 (371)
57 cd03805 GT1_ALG2_like This fam 99.0 1.1E-06 2.3E-11 87.4 31.4 79 331-425 279-364 (392)
58 PRK10307 putative glycosyl tra 99.0 2.6E-06 5.6E-11 85.3 33.4 139 285-440 230-387 (412)
59 TIGR03449 mycothiol_MshA UDP-N 99.0 1.2E-06 2.6E-11 87.5 30.8 80 331-425 282-368 (405)
60 cd03816 GT1_ALG1_like This fam 99.0 8.2E-07 1.8E-11 88.9 29.3 93 332-441 294-399 (415)
61 cd03820 GT1_amsD_like This fam 99.0 7.4E-07 1.6E-11 86.0 28.4 126 285-425 179-319 (348)
62 TIGR00236 wecB UDP-N-acetylglu 99.0 4.6E-08 1E-12 96.3 18.9 153 284-463 198-363 (365)
63 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 7.3E-09 1.6E-13 101.9 13.2 127 282-425 197-337 (363)
64 cd03821 GT1_Bme6_like This fam 99.0 2E-06 4.3E-11 84.1 30.4 80 331-425 261-345 (375)
65 cd03798 GT1_wlbH_like This fam 98.9 2.4E-06 5.1E-11 83.3 30.0 128 285-425 203-344 (377)
66 PRK05749 3-deoxy-D-manno-octul 98.9 9.6E-07 2.1E-11 88.8 25.6 80 333-425 303-388 (425)
67 cd03822 GT1_ecORF704_like This 98.9 2.5E-06 5.5E-11 83.4 27.9 79 331-425 246-334 (366)
68 cd03796 GT1_PIG-A_like This fa 98.9 5.2E-06 1.1E-10 82.7 30.4 124 284-425 193-333 (398)
69 TIGR02468 sucrsPsyn_pln sucros 98.9 9.1E-06 2E-10 87.4 33.1 352 24-425 196-637 (1050)
70 TIGR02472 sucr_P_syn_N sucrose 98.9 6.1E-06 1.3E-10 83.3 30.7 80 331-425 316-406 (439)
71 cd03819 GT1_WavL_like This fam 98.9 4.3E-06 9.3E-11 81.7 28.9 145 285-442 186-347 (355)
72 PF04007 DUF354: Protein of un 98.9 2.8E-06 6.1E-11 81.1 26.3 299 13-423 1-308 (335)
73 cd03795 GT1_like_4 This family 98.8 2.3E-06 5.1E-11 83.5 26.1 126 285-425 192-332 (357)
74 PRK14089 ipid-A-disaccharide s 98.8 6.1E-07 1.3E-11 86.2 19.5 158 284-460 168-343 (347)
75 cd03799 GT1_amsK_like This is 98.8 1.2E-05 2.6E-10 78.4 28.3 126 285-425 180-327 (355)
76 cd03811 GT1_WabH_like This fam 98.7 5.2E-06 1.1E-10 80.2 24.7 124 285-425 190-332 (353)
77 cd04951 GT1_WbdM_like This fam 98.7 7.6E-06 1.7E-10 80.0 25.1 132 285-439 189-336 (360)
78 cd03807 GT1_WbnK_like This fam 98.7 4.2E-05 9.1E-10 74.3 29.4 122 285-425 194-332 (365)
79 cd04955 GT1_like_6 This family 98.7 3.1E-05 6.8E-10 75.7 27.5 118 287-425 196-330 (363)
80 cd03802 GT1_AviGT4_like This f 98.6 1.9E-05 4E-10 76.5 23.7 122 286-425 173-308 (335)
81 cd05844 GT1_like_7 Glycosyltra 98.6 5.7E-05 1.2E-09 74.2 27.3 80 331-425 244-336 (367)
82 PRK09922 UDP-D-galactose:(gluc 98.6 2.3E-05 4.9E-10 77.0 23.7 126 285-426 181-325 (359)
83 cd03812 GT1_CapH_like This fam 98.6 7.5E-05 1.6E-09 73.0 26.9 126 285-426 193-332 (358)
84 TIGR02149 glgA_Coryne glycogen 98.5 0.00027 5.9E-09 70.0 30.1 130 285-425 202-352 (388)
85 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 8.8E-06 1.9E-10 79.7 18.7 122 283-424 201-338 (365)
86 PF02350 Epimerase_2: UDP-N-ac 98.5 1.8E-06 4E-11 83.6 12.8 139 281-444 178-332 (346)
87 cd03809 GT1_mtfB_like This fam 98.5 0.00014 3E-09 71.0 25.9 133 285-439 196-345 (365)
88 TIGR02470 sucr_synth sucrose s 98.4 0.0023 5E-08 67.7 35.0 120 13-141 256-414 (784)
89 cd03806 GT1_ALG11_like This fa 98.4 0.00043 9.3E-09 69.4 28.7 81 330-426 303-393 (419)
90 PRK01021 lpxB lipid-A-disaccha 98.4 0.00023 4.9E-09 72.3 26.3 199 238-457 379-598 (608)
91 TIGR03087 stp1 sugar transfera 98.4 1.4E-05 3.1E-10 79.6 17.8 77 332-425 280-362 (397)
92 TIGR03088 stp2 sugar transfera 98.4 0.00043 9.4E-09 68.3 26.8 79 332-425 255-338 (374)
93 PRK15427 colanic acid biosynth 98.3 0.0011 2.3E-08 66.3 29.0 80 331-425 278-371 (406)
94 PLN02949 transferase, transfer 98.3 0.00028 6.1E-09 71.3 24.5 100 330-444 333-441 (463)
95 PLN02846 digalactosyldiacylgly 98.3 0.00035 7.6E-09 69.8 24.3 72 336-425 288-363 (462)
96 PLN00142 sucrose synthase 98.3 0.00061 1.3E-08 72.1 26.9 113 23-144 303-440 (815)
97 PRK15179 Vi polysaccharide bio 98.3 0.0016 3.4E-08 68.7 29.8 96 331-440 573-673 (694)
98 PF02684 LpxB: Lipid-A-disacch 98.2 0.00087 1.9E-08 65.1 25.0 197 238-457 151-367 (373)
99 PLN02275 transferase, transfer 98.2 0.0014 3.1E-08 64.5 27.1 75 332-423 286-371 (371)
100 COG0381 WecB UDP-N-acetylgluco 98.2 8.9E-05 1.9E-09 70.6 17.4 345 11-462 2-369 (383)
101 cd04950 GT1_like_1 Glycosyltra 98.2 0.0021 4.6E-08 63.4 27.9 122 285-425 206-340 (373)
102 cd03792 GT1_Trehalose_phosphor 98.2 0.00078 1.7E-08 66.4 24.6 78 331-425 251-337 (372)
103 PRK00654 glgA glycogen synthas 98.2 0.00096 2.1E-08 67.9 25.0 127 285-424 283-427 (466)
104 TIGR02095 glgA glycogen/starch 98.1 0.0033 7.2E-08 64.2 28.3 129 285-424 292-436 (473)
105 cd03791 GT1_Glycogen_synthase_ 98.1 0.0024 5.3E-08 65.2 26.3 129 285-424 297-441 (476)
106 KOG3349 Predicted glycosyltran 98.0 1.4E-05 3.1E-10 64.7 6.6 105 285-392 5-126 (170)
107 PF13844 Glyco_transf_41: Glyc 98.0 0.00018 4E-09 71.2 15.3 165 282-467 283-462 (468)
108 COG0763 LpxB Lipid A disacchar 97.9 0.0053 1.2E-07 58.6 22.7 206 238-466 154-380 (381)
109 PRK10017 colanic acid biosynth 97.9 0.022 4.8E-07 56.8 27.7 171 275-468 226-425 (426)
110 PLN02316 synthase/transferase 97.9 0.063 1.4E-06 58.8 32.4 118 331-465 899-1031(1036)
111 COG1519 KdtA 3-deoxy-D-manno-o 97.8 0.033 7.1E-07 54.0 27.7 322 15-445 51-405 (419)
112 PLN02501 digalactosyldiacylgly 97.8 0.036 7.9E-07 57.5 27.7 76 333-426 602-682 (794)
113 cd03804 GT1_wbaZ_like This fam 97.8 0.00016 3.5E-09 70.7 10.3 124 287-425 198-326 (351)
114 PRK10125 putative glycosyl tra 97.7 0.023 5E-07 56.7 25.2 101 299-419 256-365 (405)
115 PRK15484 lipopolysaccharide 1, 97.7 0.0022 4.8E-08 63.4 17.7 82 330-425 255-344 (380)
116 cd04949 GT1_gtfA_like This fam 97.7 0.01 2.2E-07 58.4 22.3 102 330-444 259-363 (372)
117 TIGR02918 accessory Sec system 97.7 0.017 3.8E-07 59.0 24.2 148 285-444 320-484 (500)
118 cd03813 GT1_like_3 This family 97.7 0.019 4.1E-07 58.7 24.1 81 331-425 353-442 (475)
119 PF00534 Glycos_transf_1: Glyc 97.7 0.0008 1.7E-08 58.2 12.0 126 283-425 14-158 (172)
120 cd04946 GT1_AmsK_like This fam 97.6 0.0022 4.8E-08 64.1 16.0 156 285-462 231-406 (407)
121 PRK09814 beta-1,6-galactofuran 97.4 0.0019 4.1E-08 62.6 11.8 111 330-463 205-331 (333)
122 COG5017 Uncharacterized conser 97.4 0.0017 3.8E-08 51.8 8.9 108 286-401 2-123 (161)
123 PF13692 Glyco_trans_1_4: Glyc 97.4 0.0009 2E-08 55.3 8.0 125 285-425 3-135 (135)
124 COG3914 Spy Predicted O-linked 97.3 0.25 5.3E-06 49.8 25.1 111 282-396 428-557 (620)
125 TIGR02193 heptsyl_trn_I lipopo 97.2 0.074 1.6E-06 51.2 20.4 47 14-60 1-47 (319)
126 cd01635 Glycosyltransferase_GT 97.2 0.04 8.7E-07 49.4 17.5 49 331-381 160-216 (229)
127 PRK15490 Vi polysaccharide bio 97.1 0.35 7.7E-06 49.4 24.8 64 331-401 454-522 (578)
128 PF06722 DUF1205: Protein of u 97.1 0.0008 1.7E-08 51.7 4.8 66 270-335 27-97 (97)
129 PRK10422 lipopolysaccharide co 97.1 0.11 2.4E-06 50.8 21.0 111 10-141 3-114 (352)
130 KOG4626 O-linked N-acetylgluco 96.7 0.013 2.8E-07 58.8 10.6 148 282-447 757-918 (966)
131 PHA01633 putative glycosyl tra 96.7 0.019 4.1E-07 55.2 11.1 85 330-425 199-307 (335)
132 PRK10916 ADP-heptose:LPS hepto 96.7 0.22 4.7E-06 48.6 18.9 105 13-140 1-106 (348)
133 COG0859 RfaF ADP-heptose:LPS h 96.5 0.34 7.5E-06 46.9 19.1 109 12-142 1-109 (334)
134 cd03789 GT1_LPS_heptosyltransf 96.3 0.28 6.1E-06 46.1 16.7 104 14-140 1-105 (279)
135 PRK14098 glycogen synthase; Pr 96.3 0.15 3.3E-06 52.1 15.8 126 285-423 308-449 (489)
136 PF13477 Glyco_trans_4_2: Glyc 96.2 0.06 1.3E-06 44.5 10.4 102 14-142 1-106 (139)
137 TIGR02195 heptsyl_trn_II lipop 96.2 0.94 2E-05 43.8 20.0 104 14-140 1-105 (334)
138 TIGR02201 heptsyl_trn_III lipo 96.1 0.63 1.4E-05 45.3 18.5 108 14-141 1-109 (344)
139 PRK10964 ADP-heptose:LPS hepto 96.0 1.6 3.5E-05 42.0 22.7 48 13-60 1-48 (322)
140 PF12000 Glyco_trans_4_3: Gkyc 95.9 0.072 1.6E-06 45.6 9.4 95 41-144 2-97 (171)
141 PF13579 Glyco_trans_4_4: Glyc 95.9 0.034 7.5E-07 46.8 7.5 98 27-143 5-104 (160)
142 COG1817 Uncharacterized protei 95.8 1.2 2.7E-05 41.5 17.4 106 21-147 8-116 (346)
143 PHA01630 putative group 1 glyc 95.8 0.36 7.8E-06 46.7 15.1 76 339-425 197-294 (331)
144 PF13524 Glyco_trans_1_2: Glyc 95.0 0.18 3.8E-06 38.4 8.2 83 357-462 9-91 (92)
145 PF01975 SurE: Survival protei 94.5 0.22 4.8E-06 43.9 8.4 118 13-145 1-135 (196)
146 PF08660 Alg14: Oligosaccharid 94.0 0.27 5.8E-06 42.3 7.7 113 16-141 2-127 (170)
147 TIGR02400 trehalose_OtsA alpha 93.6 0.62 1.3E-05 47.2 10.7 103 338-466 342-455 (456)
148 PF06258 Mito_fiss_Elm1: Mitoc 93.4 1.8 3.8E-05 41.4 12.8 38 341-380 221-259 (311)
149 PLN02939 transferase, transfer 93.4 2.7 5.9E-05 45.9 15.3 84 331-424 836-930 (977)
150 COG3660 Predicted nucleoside-d 92.9 7.3 0.00016 35.6 17.4 71 304-376 189-271 (329)
151 PRK13932 stationary phase surv 92.8 2.1 4.5E-05 39.4 11.8 115 12-143 5-133 (257)
152 KOG2941 Beta-1,4-mannosyltrans 92.7 9.6 0.00021 36.3 24.2 125 10-148 10-142 (444)
153 TIGR02919 accessory Sec system 92.5 2.9 6.4E-05 42.0 13.6 134 282-442 282-424 (438)
154 TIGR03713 acc_sec_asp1 accesso 91.9 4.6 9.9E-05 41.6 14.4 92 332-444 409-506 (519)
155 COG4370 Uncharacterized protei 91.4 0.68 1.5E-05 42.9 6.8 90 332-438 294-387 (412)
156 COG1618 Predicted nucleotide k 91.3 1.1 2.4E-05 37.7 7.4 57 11-74 4-60 (179)
157 PF13439 Glyco_transf_4: Glyco 91.1 1.8 4E-05 36.7 9.3 101 22-146 11-112 (177)
158 cd03788 GT1_TPS Trehalose-6-Ph 90.9 0.91 2E-05 46.1 8.1 101 337-465 346-459 (460)
159 PRK13935 stationary phase surv 90.2 5.3 0.00011 36.7 11.5 113 13-143 1-128 (253)
160 PRK13933 stationary phase surv 89.9 5.9 0.00013 36.4 11.6 114 13-143 1-129 (253)
161 PRK00346 surE 5'(3')-nucleotid 89.6 6.3 0.00014 36.2 11.6 111 13-143 1-124 (250)
162 PRK13934 stationary phase surv 89.1 8 0.00017 35.8 11.8 112 13-143 1-127 (266)
163 PRK14099 glycogen synthase; Pr 89.0 15 0.00033 37.6 15.3 39 11-51 2-46 (485)
164 COG0438 RfaG Glycosyltransfera 88.0 23 0.00051 33.1 15.4 79 332-425 257-342 (381)
165 PLN03063 alpha,alpha-trehalose 87.8 2.7 5.9E-05 45.8 9.3 101 344-468 371-478 (797)
166 TIGR00087 surE 5'/3'-nucleotid 87.3 5.8 0.00013 36.3 9.8 113 13-143 1-128 (244)
167 PRK02797 4-alpha-L-fucosyltran 86.0 7.8 0.00017 36.5 9.9 127 285-423 146-292 (322)
168 COG0003 ArsA Predicted ATPase 85.9 7.6 0.00017 37.2 10.1 41 12-54 1-42 (322)
169 cd03793 GT1_Glycogen_synthase_ 83.8 3.8 8.2E-05 42.2 7.4 80 341-425 467-552 (590)
170 PF02951 GSH-S_N: Prokaryotic 82.4 2.6 5.6E-05 33.8 4.6 40 13-54 1-43 (119)
171 PRK14501 putative bifunctional 82.2 4.6 0.0001 43.7 7.9 111 336-468 346-463 (726)
172 PF02441 Flavoprotein: Flavopr 82.1 2.2 4.7E-05 34.8 4.2 45 13-60 1-45 (129)
173 PRK13931 stationary phase surv 81.9 14 0.00029 34.3 9.7 102 27-143 14-129 (261)
174 COG0496 SurE Predicted acid ph 81.8 10 0.00022 34.7 8.6 114 13-145 1-127 (252)
175 PF04464 Glyphos_transf: CDP-G 80.4 3 6.4E-05 41.0 5.3 144 301-461 219-367 (369)
176 PF02374 ArsA_ATPase: Anion-tr 80.1 4.2 9E-05 38.8 6.0 41 13-55 1-42 (305)
177 PRK02261 methylaspartate mutas 79.7 4.2 9.1E-05 33.6 5.1 42 11-54 2-43 (137)
178 TIGR02398 gluc_glyc_Psyn gluco 78.9 37 0.00079 34.7 12.5 109 334-468 364-483 (487)
179 COG1703 ArgK Putative periplas 78.3 40 0.00086 31.8 11.3 121 11-144 50-175 (323)
180 PRK05647 purN phosphoribosylgl 77.6 22 0.00047 31.5 9.3 37 12-51 1-37 (200)
181 COG2910 Putative NADH-flavin r 76.7 3 6.4E-05 36.0 3.4 36 13-54 1-36 (211)
182 COG2894 MinD Septum formation 75.3 37 0.00079 30.5 9.7 104 12-124 1-123 (272)
183 PF02844 GARS_N: Phosphoribosy 73.8 16 0.00036 28.2 6.5 32 13-49 1-32 (100)
184 PF01012 ETF: Electron transfe 73.0 16 0.00034 31.1 7.1 107 15-143 2-122 (164)
185 PRK12342 hypothetical protein; 72.5 35 0.00075 31.5 9.5 39 101-144 101-145 (254)
186 PF02142 MGS: MGS-like domain 72.3 9.7 0.00021 29.0 5.1 84 29-139 2-94 (95)
187 PRK07313 phosphopantothenoylcy 71.9 5.2 0.00011 34.9 3.9 45 12-59 1-45 (182)
188 PF07429 Glyco_transf_56: 4-al 71.8 57 0.0012 31.5 10.8 128 285-424 185-332 (360)
189 PF09314 DUF1972: Domain of un 71.1 71 0.0015 27.9 10.9 57 12-73 1-62 (185)
190 PF01075 Glyco_transf_9: Glyco 71.0 5.7 0.00012 36.3 4.2 92 282-376 104-208 (247)
191 PRK06029 3-octaprenyl-4-hydrox 70.8 5.6 0.00012 34.7 3.8 46 12-60 1-47 (185)
192 PF05159 Capsule_synth: Capsul 70.2 13 0.00028 34.7 6.4 74 302-378 144-226 (269)
193 cd02067 B12-binding B12 bindin 70.0 7.1 0.00015 31.1 4.1 36 14-51 1-36 (119)
194 TIGR00715 precor6x_red precorr 70.0 37 0.00081 31.4 9.2 35 13-54 1-35 (256)
195 TIGR00347 bioD dethiobiotin sy 69.6 48 0.001 28.0 9.5 28 19-48 5-32 (166)
196 KOG0853 Glycosyltransferase [C 69.0 26 0.00056 35.5 8.4 61 362-438 381-441 (495)
197 COG0052 RpsB Ribosomal protein 68.4 80 0.0017 28.8 10.5 33 114-146 156-190 (252)
198 PRK08057 cobalt-precorrin-6x r 67.9 48 0.001 30.5 9.4 91 12-141 2-98 (248)
199 COG0132 BioD Dethiobiotin synt 67.4 96 0.0021 28.0 11.3 128 12-151 1-152 (223)
200 PRK08305 spoVFB dipicolinate s 66.3 8.7 0.00019 33.8 4.1 44 12-58 5-49 (196)
201 PRK13789 phosphoribosylamine-- 66.1 17 0.00038 36.4 6.8 36 11-53 3-38 (426)
202 COG1066 Sms Predicted ATP-depe 66.1 7 0.00015 38.2 3.7 41 15-58 96-136 (456)
203 PRK08506 replicative DNA helic 65.9 30 0.00065 35.3 8.5 41 15-57 195-235 (472)
204 PRK14098 glycogen synthase; Pr 65.9 9.5 0.00021 39.1 5.0 40 10-51 3-48 (489)
205 PF00551 Formyl_trans_N: Formy 64.7 20 0.00042 31.2 6.1 106 13-144 1-110 (181)
206 PF04127 DFP: DNA / pantothena 64.5 6.8 0.00015 34.2 3.1 39 12-52 3-53 (185)
207 smart00851 MGS MGS-like domain 64.3 52 0.0011 24.6 7.6 78 29-139 2-89 (90)
208 PRK05920 aromatic acid decarbo 64.2 9.3 0.0002 33.9 3.9 45 12-59 3-47 (204)
209 PF02571 CbiJ: Precorrin-6x re 64.1 36 0.00077 31.4 7.8 93 13-141 1-99 (249)
210 cd00550 ArsA_ATPase Oxyanion-t 63.6 40 0.00086 31.1 8.2 36 15-52 3-38 (254)
211 COG0297 GlgA Glycogen synthase 63.4 1.8E+02 0.0039 29.7 15.0 163 285-466 295-476 (487)
212 PRK01077 cobyrinic acid a,c-di 62.8 67 0.0014 32.6 10.3 109 12-145 3-124 (451)
213 PRK13982 bifunctional SbtC-lik 62.7 32 0.0007 34.9 7.8 40 11-52 255-306 (475)
214 TIGR03600 phage_DnaB phage rep 62.1 43 0.00093 33.6 8.8 40 15-56 197-237 (421)
215 cd01425 RPS2 Ribosomal protein 62.0 48 0.001 29.1 8.0 116 24-145 40-160 (193)
216 PHA02542 41 41 helicase; Provi 61.3 23 0.00049 36.1 6.6 39 15-55 193-231 (473)
217 COG2159 Predicted metal-depend 61.2 23 0.00049 33.5 6.2 95 271-368 116-212 (293)
218 PF01210 NAD_Gly3P_dh_N: NAD-d 60.5 6.2 0.00013 33.4 2.1 32 14-52 1-32 (157)
219 PRK05595 replicative DNA helic 60.0 37 0.0008 34.3 7.9 40 15-56 204-244 (444)
220 PRK05632 phosphate acetyltrans 59.9 90 0.002 33.6 11.1 101 14-146 4-117 (684)
221 PF12146 Hydrolase_4: Putative 59.4 26 0.00056 25.7 5.0 36 12-49 15-50 (79)
222 PRK06904 replicative DNA helic 59.0 58 0.0012 33.2 9.0 41 15-56 224-264 (472)
223 KOG1250 Threonine/serine dehyd 58.7 1.5E+02 0.0032 29.2 10.9 32 114-145 114-147 (457)
224 cd00984 DnaB_C DnaB helicase C 58.2 79 0.0017 28.6 9.2 41 15-57 16-57 (242)
225 COG3640 CooC CO dehydrogenase 58.1 1E+02 0.0022 28.0 9.2 46 13-60 1-47 (255)
226 PF04413 Glycos_transf_N: 3-De 57.5 44 0.00096 29.2 7.0 101 14-142 22-125 (186)
227 PRK06321 replicative DNA helic 57.1 72 0.0016 32.5 9.3 40 15-55 229-268 (472)
228 PRK06988 putative formyltransf 56.8 62 0.0013 31.0 8.4 33 12-51 2-34 (312)
229 PRK08760 replicative DNA helic 56.6 32 0.00069 35.1 6.8 40 15-55 232-271 (476)
230 PF10093 DUF2331: Uncharacteri 56.5 2.1E+02 0.0044 28.1 22.7 76 297-375 193-287 (374)
231 PF02310 B12-binding: B12 bind 56.4 25 0.00055 27.8 5.0 36 14-51 2-37 (121)
232 PRK06718 precorrin-2 dehydroge 54.2 1.6E+02 0.0034 26.1 10.3 145 283-447 11-165 (202)
233 KOG1387 Glycosyltransferase [C 54.2 2.1E+02 0.0046 27.7 27.5 374 13-465 44-459 (465)
234 PF00731 AIRC: AIR carboxylase 53.7 1.3E+02 0.0029 25.2 8.8 141 285-447 2-149 (150)
235 PRK00784 cobyric acid synthase 53.6 59 0.0013 33.4 8.2 35 14-50 4-39 (488)
236 COG1748 LYS9 Saccharopine dehy 53.4 62 0.0013 31.9 7.8 53 12-73 1-55 (389)
237 PF10933 DUF2827: Protein of u 53.1 52 0.0011 31.8 7.0 102 335-464 256-362 (364)
238 COG1036 Archaeal flavoproteins 52.7 25 0.00055 29.5 4.2 52 6-58 1-54 (187)
239 cd00561 CobA_CobO_BtuR ATP:cor 52.6 1.4E+02 0.0031 25.2 10.2 34 14-49 4-37 (159)
240 PRK08006 replicative DNA helic 52.0 99 0.0021 31.5 9.4 40 15-55 227-266 (471)
241 PRK14099 glycogen synthase; Pr 50.8 24 0.00052 36.1 4.9 128 285-425 296-447 (485)
242 PF05693 Glycogen_syn: Glycoge 50.7 23 0.00051 36.7 4.6 95 340-444 461-566 (633)
243 PRK11199 tyrA bifunctional cho 50.6 1.2E+02 0.0025 30.0 9.4 34 11-51 97-131 (374)
244 PF06925 MGDG_synth: Monogalac 50.6 47 0.001 28.3 6.0 22 25-47 1-22 (169)
245 PRK00090 bioD dithiobiotin syn 50.3 83 0.0018 28.1 7.9 29 20-50 8-36 (222)
246 PRK06732 phosphopantothenate-- 49.2 25 0.00054 31.9 4.2 37 13-51 1-49 (229)
247 PRK05636 replicative DNA helic 48.9 49 0.0011 34.0 6.7 41 15-56 268-308 (505)
248 TIGR00725 conserved hypothetic 48.7 68 0.0015 27.2 6.5 99 271-378 21-123 (159)
249 TIGR02113 coaC_strep phosphopa 48.6 25 0.00055 30.4 4.0 43 14-59 2-44 (177)
250 TIGR01470 cysG_Nterm siroheme 48.4 1.9E+02 0.004 25.7 9.6 148 283-447 10-165 (205)
251 cd01980 Chlide_reductase_Y Chl 48.2 46 0.001 33.3 6.3 25 114-141 350-374 (416)
252 PRK13196 pyrrolidone-carboxyla 48.2 58 0.0013 29.1 6.3 27 12-38 1-29 (211)
253 PF01075 Glyco_transf_9: Glyco 48.0 66 0.0014 29.2 7.0 100 12-145 105-212 (247)
254 TIGR02015 BchY chlorophyllide 48.0 1.3E+02 0.0027 30.3 9.3 31 14-51 287-317 (422)
255 cd01121 Sms Sms (bacterial rad 47.9 28 0.00061 34.2 4.6 41 15-57 85-125 (372)
256 PF03308 ArgK: ArgK protein; 47.8 2.3E+02 0.005 26.2 10.0 120 11-143 28-152 (266)
257 COG1484 DnaC DNA replication p 47.7 27 0.00059 32.3 4.3 46 12-59 105-150 (254)
258 PRK14106 murD UDP-N-acetylmura 47.6 1.1E+02 0.0023 31.0 9.0 34 12-52 5-38 (450)
259 PRK08840 replicative DNA helic 47.5 1.1E+02 0.0025 31.0 9.0 41 15-56 220-260 (464)
260 PRK11823 DNA repair protein Ra 47.4 28 0.00061 35.2 4.7 42 14-57 82-123 (446)
261 TIGR02852 spore_dpaB dipicolin 47.3 25 0.00054 30.7 3.7 42 14-57 2-43 (187)
262 COG0240 GpsA Glycerol-3-phosph 47.2 25 0.00054 33.6 3.9 33 12-51 1-33 (329)
263 COG0801 FolK 7,8-dihydro-6-hyd 47.1 42 0.00092 28.4 4.9 36 285-320 3-38 (160)
264 TIGR02655 circ_KaiC circadian 46.9 75 0.0016 32.5 7.7 43 14-58 265-307 (484)
265 cd01985 ETF The electron trans 46.8 1.8E+02 0.0039 25.0 9.2 30 114-143 91-123 (181)
266 PRK14619 NAD(P)H-dependent gly 46.6 43 0.00094 31.9 5.6 35 11-52 3-37 (308)
267 PRK13886 conjugal transfer pro 46.2 2.4E+02 0.0051 25.8 10.4 38 12-51 1-40 (241)
268 TIGR00460 fmt methionyl-tRNA f 46.2 1.1E+02 0.0024 29.3 8.3 32 13-51 1-32 (313)
269 PLN02939 transferase, transfer 46.2 37 0.0008 37.5 5.5 43 8-52 477-525 (977)
270 COG4088 Predicted nucleotide k 46.0 26 0.00057 31.1 3.5 38 12-51 1-38 (261)
271 KOG1111 N-acetylglucosaminyltr 45.7 2E+02 0.0043 28.0 9.5 79 296-376 208-301 (426)
272 TIGR00708 cobA cob(I)alamin ad 45.6 2E+02 0.0043 24.8 10.0 95 14-124 7-107 (173)
273 COG2861 Uncharacterized protei 45.6 1.6E+02 0.0034 26.8 8.3 39 98-140 137-178 (250)
274 cd01421 IMPCH Inosine monophos 45.2 83 0.0018 27.4 6.5 39 26-73 10-48 (187)
275 PRK12446 undecaprenyldiphospho 45.1 1.2E+02 0.0027 29.4 8.6 87 285-376 4-120 (352)
276 TIGR02700 flavo_MJ0208 archaeo 45.0 29 0.00063 31.6 4.0 43 15-60 2-47 (234)
277 cd02037 MRP-like MRP (Multiple 44.7 86 0.0019 26.6 6.7 29 21-51 9-37 (169)
278 PRK09165 replicative DNA helic 44.7 94 0.002 32.0 8.0 43 15-57 220-275 (497)
279 cd07038 TPP_PYR_PDC_IPDC_like 44.5 50 0.0011 28.0 5.1 28 351-378 60-93 (162)
280 PRK06849 hypothetical protein; 44.4 43 0.00092 33.1 5.4 36 11-52 3-38 (389)
281 PRK07206 hypothetical protein; 44.3 77 0.0017 31.6 7.3 34 12-52 2-35 (416)
282 TIGR02370 pyl_corrinoid methyl 44.1 48 0.001 29.3 5.1 41 11-53 83-123 (197)
283 COG1435 Tdk Thymidine kinase [ 43.8 2.3E+02 0.005 25.0 9.1 39 12-52 3-42 (201)
284 TIGR00665 DnaB replicative DNA 43.6 1.1E+02 0.0025 30.6 8.4 42 15-57 198-239 (434)
285 PF09001 DUF1890: Domain of un 43.3 31 0.00067 28.2 3.3 37 22-60 9-45 (139)
286 cd02071 MM_CoA_mut_B12_BD meth 42.8 43 0.00093 26.8 4.3 37 14-52 1-37 (122)
287 PRK12815 carB carbamoyl phosph 42.8 3.4E+02 0.0073 31.1 12.6 45 6-52 1-51 (1068)
288 KOG0081 GTPase Rab27, small G 42.7 52 0.0011 27.7 4.6 46 101-146 109-166 (219)
289 PRK03359 putative electron tra 42.4 43 0.00093 31.0 4.6 39 101-144 104-148 (256)
290 PF00862 Sucrose_synth: Sucros 42.3 52 0.0011 33.4 5.4 117 22-145 295-434 (550)
291 TIGR00416 sms DNA repair prote 42.3 49 0.0011 33.5 5.5 42 14-57 96-137 (454)
292 cd02070 corrinoid_protein_B12- 42.2 50 0.0011 29.2 4.9 38 12-51 82-119 (201)
293 cd07039 TPP_PYR_POX Pyrimidine 42.1 2.1E+02 0.0047 24.2 9.5 27 352-378 65-97 (164)
294 PF03446 NAD_binding_2: NAD bi 41.9 28 0.0006 29.6 3.2 32 12-50 1-32 (163)
295 PRK08229 2-dehydropantoate 2-r 41.7 29 0.00063 33.5 3.7 42 12-60 2-43 (341)
296 COG0287 TyrA Prephenate dehydr 41.6 1.9E+02 0.0041 27.2 8.8 42 12-60 3-44 (279)
297 PF05014 Nuc_deoxyrib_tr: Nucl 41.6 24 0.00053 27.7 2.6 91 286-381 1-100 (113)
298 PRK05380 pyrG CTP synthetase; 41.6 80 0.0017 32.5 6.7 43 12-56 1-46 (533)
299 PRK09739 hypothetical protein; 41.5 62 0.0014 28.5 5.5 37 11-49 2-41 (199)
300 PRK10867 signal recognition pa 41.0 1.8E+02 0.0039 29.3 9.1 41 13-55 101-142 (433)
301 PRK04885 ppnK inorganic polyph 40.6 46 0.001 30.9 4.6 52 349-425 36-93 (265)
302 PLN03064 alpha,alpha-trehalose 40.6 1.6E+02 0.0036 32.8 9.4 104 343-468 454-562 (934)
303 PRK06249 2-dehydropantoate 2-r 40.5 50 0.0011 31.5 5.0 41 12-60 5-45 (313)
304 COG2109 BtuR ATP:corrinoid ade 40.4 2.6E+02 0.0055 24.6 10.4 98 14-125 30-133 (198)
305 PRK09620 hypothetical protein; 40.4 50 0.0011 30.0 4.7 38 12-51 3-52 (229)
306 PRK07773 replicative DNA helic 40.2 83 0.0018 35.1 7.2 42 15-57 220-261 (886)
307 PF06506 PrpR_N: Propionate ca 40.0 37 0.0008 29.3 3.7 63 354-424 38-123 (176)
308 PRK12311 rpsB 30S ribosomal pr 40.0 3.1E+02 0.0067 26.4 10.1 32 114-145 152-185 (326)
309 TIGR00379 cobB cobyrinic acid 40.0 1.9E+02 0.004 29.4 9.2 101 21-146 9-121 (449)
310 cd00532 MGS-like MGS-like doma 39.9 1.8E+02 0.0039 22.7 7.4 85 25-140 10-104 (112)
311 TIGR00421 ubiX_pad polyprenyl 39.8 31 0.00068 30.0 3.2 42 15-59 2-43 (181)
312 TIGR00959 ffh signal recogniti 39.7 2.1E+02 0.0045 28.8 9.3 41 13-55 100-141 (428)
313 KOG0780 Signal recognition par 39.6 1.4E+02 0.0031 29.3 7.6 39 14-54 103-141 (483)
314 cd01423 MGS_CPS_I_III Methylgl 39.5 1.6E+02 0.0036 23.1 7.2 87 25-140 11-106 (116)
315 PLN02929 NADH kinase 39.5 1.6E+02 0.0035 28.0 8.0 96 298-425 33-137 (301)
316 PRK04539 ppnK inorganic polyph 39.3 2.4E+02 0.0051 26.8 9.2 54 347-425 67-124 (296)
317 PF03808 Glyco_tran_WecB: Glyc 39.2 2.3E+02 0.0049 24.3 8.5 95 29-147 37-137 (172)
318 PRK12921 2-dehydropantoate 2-r 38.9 45 0.00097 31.5 4.5 41 13-60 1-41 (305)
319 TIGR02699 archaeo_AfpA archaeo 38.3 41 0.00089 29.0 3.6 36 23-59 9-45 (174)
320 PRK05784 phosphoribosylamine-- 38.0 1.7E+02 0.0036 30.1 8.5 34 13-51 1-34 (486)
321 PRK05579 bifunctional phosphop 37.8 49 0.0011 32.9 4.6 47 11-60 5-51 (399)
322 cd01965 Nitrogenase_MoFe_beta_ 37.7 89 0.0019 31.4 6.5 25 114-141 371-395 (428)
323 PLN02327 CTP synthase 37.6 1E+02 0.0023 31.8 6.8 42 13-56 1-45 (557)
324 cd03113 CTGs CTP synthetase (C 37.3 1.3E+02 0.0028 27.5 6.7 41 14-56 1-44 (255)
325 TIGR00355 purH phosphoribosyla 37.2 1E+02 0.0022 31.5 6.5 39 26-73 10-48 (511)
326 PRK07952 DNA replication prote 37.2 1.9E+02 0.0041 26.6 8.0 37 14-52 101-137 (244)
327 KOG3339 Predicted glycosyltran 37.1 1.5E+02 0.0032 25.8 6.6 31 13-44 39-69 (211)
328 TIGR01285 nifN nitrogenase mol 36.6 2.2E+02 0.0047 28.7 9.0 87 12-141 311-397 (432)
329 cd01424 MGS_CPS_II Methylglyox 36.3 2E+02 0.0044 22.3 8.4 84 24-140 10-100 (110)
330 PRK02155 ppnK NAD(+)/NADH kina 36.0 66 0.0014 30.4 5.0 95 299-425 21-119 (291)
331 PF06506 PrpR_N: Propionate ca 35.9 47 0.001 28.6 3.7 46 98-148 111-156 (176)
332 COG4394 Uncharacterized protei 35.9 3.8E+02 0.0082 25.2 10.5 29 22-51 13-41 (370)
333 PRK06522 2-dehydropantoate 2-r 35.8 40 0.00088 31.8 3.6 41 13-60 1-42 (304)
334 TIGR00853 pts-lac PTS system, 35.8 89 0.0019 23.8 4.8 38 11-50 2-39 (95)
335 COG0503 Apt Adenine/guanine ph 35.8 77 0.0017 27.5 5.0 28 114-141 53-82 (179)
336 CHL00072 chlL photochlorophyll 35.7 63 0.0014 30.5 4.8 37 13-51 1-37 (290)
337 PRK13768 GTPase; Provisional 35.7 97 0.0021 28.5 6.0 37 14-52 4-40 (253)
338 PRK06395 phosphoribosylamine-- 35.2 1.7E+02 0.0036 29.5 8.0 32 12-50 2-33 (435)
339 COG2874 FlaH Predicted ATPases 35.2 43 0.00094 29.9 3.3 36 15-52 31-66 (235)
340 TIGR00521 coaBC_dfp phosphopan 35.1 44 0.00095 33.1 3.7 46 12-60 3-48 (390)
341 PF06032 DUF917: Protein of un 34.9 47 0.001 32.4 3.9 103 18-141 16-122 (353)
342 PF13500 AAA_26: AAA domain; P 34.8 3.1E+02 0.0066 23.9 8.9 118 15-147 3-141 (199)
343 COG2085 Predicted dinucleotide 34.7 63 0.0014 28.8 4.2 35 12-53 1-35 (211)
344 PRK13011 formyltetrahydrofolat 34.7 3.5E+02 0.0077 25.5 9.6 106 8-141 85-193 (286)
345 PRK00885 phosphoribosylamine-- 34.6 1.7E+02 0.0037 29.2 8.0 29 13-48 1-30 (420)
346 TIGR00877 purD phosphoribosyla 34.4 2.4E+02 0.0052 28.1 9.1 35 13-54 1-35 (423)
347 TIGR02195 heptsyl_trn_II lipop 34.2 3.1E+02 0.0067 26.2 9.6 98 14-143 176-278 (334)
348 PRK10037 cell division protein 34.2 64 0.0014 29.6 4.5 36 12-49 1-37 (250)
349 PRK05986 cob(I)alamin adenolsy 34.2 3.2E+02 0.007 24.0 10.9 97 13-124 23-125 (191)
350 COG1440 CelA Phosphotransferas 34.2 1E+02 0.0022 23.8 4.7 38 12-51 1-38 (102)
351 PLN02470 acetolactate synthase 34.1 59 0.0013 34.2 4.8 89 289-377 2-109 (585)
352 PRK14077 pnk inorganic polypho 34.0 68 0.0015 30.3 4.6 55 346-425 62-120 (287)
353 COG0771 MurD UDP-N-acetylmuram 33.9 64 0.0014 32.5 4.6 41 6-54 2-42 (448)
354 PRK06719 precorrin-2 dehydroge 33.9 60 0.0013 27.4 3.9 33 12-51 13-45 (157)
355 cd07035 TPP_PYR_POX_like Pyrim 33.8 2.7E+02 0.0059 23.0 9.0 26 353-378 62-93 (155)
356 cd02032 Bchl_like This family 33.7 64 0.0014 29.9 4.5 37 13-51 1-37 (267)
357 PLN02935 Bifunctional NADH kin 33.7 61 0.0013 33.0 4.4 54 347-425 261-318 (508)
358 PRK13185 chlL protochlorophyll 33.5 67 0.0014 29.8 4.6 34 14-49 4-37 (270)
359 TIGR03878 thermo_KaiC_2 KaiC d 33.5 2E+02 0.0044 26.5 7.7 39 14-54 38-76 (259)
360 PRK00094 gpsA NAD(P)H-dependen 33.5 48 0.001 31.7 3.7 33 12-51 1-33 (325)
361 PRK08462 biotin carboxylase; V 33.1 2.6E+02 0.0057 28.1 9.2 37 11-54 3-39 (445)
362 PRK00881 purH bifunctional pho 33.0 2E+02 0.0043 29.5 7.9 49 12-73 4-52 (513)
363 COG2185 Sbm Methylmalonyl-CoA 32.8 79 0.0017 26.2 4.2 41 10-52 10-50 (143)
364 TIGR00661 MJ1255 conserved hyp 32.7 1.8E+02 0.004 27.7 7.6 28 348-377 93-120 (321)
365 PF02572 CobA_CobO_BtuR: ATP:c 32.7 3.2E+02 0.007 23.5 8.9 96 14-124 5-106 (172)
366 PRK01231 ppnK inorganic polyph 32.6 2.2E+02 0.0047 27.0 7.8 95 299-425 20-118 (295)
367 PRK12743 oxidoreductase; Provi 32.5 3.1E+02 0.0067 24.8 8.9 32 14-50 3-34 (256)
368 PTZ00318 NADH dehydrogenase-li 32.2 52 0.0011 33.0 3.8 38 8-52 6-43 (424)
369 PRK12481 2-deoxy-D-gluconate 3 32.2 1.9E+02 0.0041 26.2 7.4 32 14-50 9-40 (251)
370 COG0541 Ffh Signal recognition 32.1 2.5E+02 0.0055 28.1 8.2 42 11-54 99-140 (451)
371 PRK11519 tyrosine kinase; Prov 32.0 7E+02 0.015 27.1 13.1 38 12-51 525-564 (719)
372 TIGR00750 lao LAO/AO transport 32.0 2.4E+02 0.0052 26.7 8.2 40 12-53 34-73 (300)
373 COG2236 Predicted phosphoribos 31.9 1.2E+02 0.0026 26.6 5.5 48 99-146 14-64 (192)
374 cd02069 methionine_synthase_B1 31.8 94 0.002 27.8 5.0 40 11-52 87-126 (213)
375 PF06180 CbiK: Cobalt chelatas 31.7 81 0.0018 29.3 4.7 39 284-322 2-43 (262)
376 TIGR01012 Sa_S2_E_A ribosomal 31.7 64 0.0014 28.4 3.8 32 114-145 108-141 (196)
377 PLN02735 carbamoyl-phosphate s 31.7 3.7E+02 0.008 30.9 10.7 41 10-52 21-67 (1102)
378 COG1663 LpxK Tetraacyldisaccha 31.6 1.4E+02 0.003 28.8 6.2 35 16-52 53-87 (336)
379 PRK12439 NAD(P)H-dependent gly 31.6 43 0.00093 32.5 3.0 46 6-59 1-47 (341)
380 PRK08674 bifunctional phosphog 31.5 4.8E+02 0.01 25.1 12.1 56 15-77 81-136 (337)
381 PRK04940 hypothetical protein; 31.4 1.2E+02 0.0025 26.4 5.3 32 114-145 60-92 (180)
382 PRK01911 ppnK inorganic polyph 31.1 81 0.0018 29.8 4.7 55 346-425 62-120 (292)
383 TIGR00514 accC acetyl-CoA carb 31.0 4.2E+02 0.0091 26.7 10.2 33 12-51 2-34 (449)
384 PRK09590 celB cellobiose phosp 30.7 1E+02 0.0023 23.9 4.5 37 12-50 1-37 (104)
385 PRK10416 signal recognition pa 30.6 4E+02 0.0086 25.6 9.4 39 13-53 115-153 (318)
386 COG3195 Uncharacterized protei 30.4 1.6E+02 0.0035 25.0 5.6 96 341-445 64-164 (176)
387 PF10649 DUF2478: Protein of u 30.2 3.4E+02 0.0074 23.0 11.1 113 16-145 2-133 (159)
388 PRK11914 diacylglycerol kinase 30.1 1.2E+02 0.0025 28.8 5.8 81 285-378 12-96 (306)
389 PRK09219 xanthine phosphoribos 30.1 1.1E+02 0.0025 26.7 5.1 28 114-141 50-79 (189)
390 PF04748 Polysacc_deac_2: Dive 30.1 2.7E+02 0.0058 24.9 7.6 107 11-141 21-147 (213)
391 COG0223 Fmt Methionyl-tRNA for 30.0 1E+02 0.0022 29.3 5.1 34 12-52 1-34 (307)
392 TIGR01501 MthylAspMutase methy 29.9 1.1E+02 0.0023 25.1 4.6 40 13-54 2-41 (134)
393 TIGR00337 PyrG CTP synthase. C 29.8 1.4E+02 0.003 30.8 6.3 42 13-56 1-45 (525)
394 PRK06276 acetolactate synthase 29.6 84 0.0018 33.1 5.0 27 351-377 64-96 (586)
395 COG2099 CobK Precorrin-6x redu 29.5 83 0.0018 28.8 4.2 105 29-141 117-228 (257)
396 TIGR02128 G6PI_arch bifunction 29.3 5.1E+02 0.011 24.7 12.6 115 17-144 70-186 (308)
397 TIGR01281 DPOR_bchL light-inde 29.3 86 0.0019 29.0 4.6 35 13-49 1-35 (268)
398 PF06564 YhjQ: YhjQ protein; 29.1 98 0.0021 28.3 4.7 37 12-50 1-38 (243)
399 PRK08125 bifunctional UDP-gluc 29.1 2.9E+02 0.0063 29.6 9.1 32 13-51 1-33 (660)
400 COG1759 5-formaminoimidazole-4 28.8 1E+02 0.0022 29.3 4.7 120 271-401 5-141 (361)
401 PRK13982 bifunctional SbtC-lik 28.8 70 0.0015 32.5 4.0 47 11-60 69-115 (475)
402 PF01695 IstB_IS21: IstB-like 28.8 88 0.0019 27.0 4.2 47 11-59 46-92 (178)
403 COG4126 Hydantoin racemase [Am 28.7 3.6E+02 0.0078 24.3 7.8 31 113-143 68-99 (230)
404 PRK02649 ppnK inorganic polyph 28.5 91 0.002 29.7 4.5 53 348-425 68-124 (305)
405 PRK14618 NAD(P)H-dependent gly 28.5 69 0.0015 30.8 3.9 33 12-51 4-36 (328)
406 PRK06027 purU formyltetrahydro 28.4 4.7E+02 0.01 24.6 9.3 111 6-144 83-196 (286)
407 PF05225 HTH_psq: helix-turn-h 28.4 85 0.0018 20.1 3.0 26 411-440 1-26 (45)
408 COG1348 NifH Nitrogenase subun 28.3 1.2E+02 0.0027 27.5 4.9 43 12-56 1-43 (278)
409 PF13433 Peripla_BP_5: Peripla 28.2 1.9E+02 0.0041 28.2 6.7 37 13-51 40-77 (363)
410 cd01840 SGNH_hydrolase_yrhL_li 28.1 1.3E+02 0.0029 24.8 5.1 37 283-320 51-87 (150)
411 cd01141 TroA_d Periplasmic bin 28.0 81 0.0018 27.1 4.0 29 114-142 69-99 (186)
412 PF07355 GRDB: Glycine/sarcosi 28.0 91 0.002 30.0 4.4 36 101-141 72-117 (349)
413 TIGR00118 acolac_lg acetolacta 28.0 2.8E+02 0.0061 28.9 8.6 27 351-377 65-97 (558)
414 PF08323 Glyco_transf_5: Starc 27.9 50 0.0011 30.2 2.7 27 24-52 17-43 (245)
415 PRK12475 thiamine/molybdopteri 27.9 3.9E+02 0.0085 25.9 8.9 31 12-49 24-55 (338)
416 cd00672 CysRS_core catalytic c 27.9 2.5E+02 0.0054 25.1 7.0 93 22-140 35-131 (213)
417 PRK03378 ppnK inorganic polyph 27.8 91 0.002 29.5 4.4 56 345-425 60-119 (292)
418 TIGR01380 glut_syn glutathione 27.7 72 0.0016 30.5 3.8 40 13-54 1-43 (312)
419 KOG3062 RNA polymerase II elon 27.7 1.2E+02 0.0027 27.4 4.8 38 12-51 1-39 (281)
420 PRK01175 phosphoribosylformylg 27.7 4E+02 0.0086 24.7 8.5 56 12-76 3-58 (261)
421 PRK13234 nifH nitrogenase redu 27.6 1E+02 0.0023 29.1 4.8 38 11-50 3-40 (295)
422 PRK08155 acetolactate synthase 27.5 1.5E+02 0.0032 31.1 6.4 88 290-377 4-109 (564)
423 PF10087 DUF2325: Uncharacteri 27.5 2.1E+02 0.0044 21.7 5.7 35 114-148 48-88 (97)
424 PRK02231 ppnK inorganic polyph 27.5 71 0.0015 29.8 3.6 59 341-424 35-97 (272)
425 PRK03372 ppnK inorganic polyph 27.2 99 0.0021 29.5 4.5 54 347-425 71-128 (306)
426 PRK13512 coenzyme A disulfide 27.2 58 0.0012 32.8 3.2 36 12-52 1-36 (438)
427 PRK04020 rps2P 30S ribosomal p 27.1 82 0.0018 28.0 3.7 32 114-145 114-147 (204)
428 cd03789 GT1_LPS_heptosyltransf 27.1 2.2E+02 0.0047 26.4 6.9 99 14-143 123-225 (279)
429 cd03818 GT1_ExpC_like This fam 26.7 2E+02 0.0043 28.3 6.9 27 297-323 9-35 (396)
430 PRK06756 flavodoxin; Provision 26.6 1.2E+02 0.0026 25.0 4.6 37 12-50 1-38 (148)
431 CHL00067 rps2 ribosomal protei 26.5 3.9E+02 0.0085 24.2 8.1 34 113-146 160-195 (230)
432 TIGR01162 purE phosphoribosyla 26.4 2.5E+02 0.0053 23.8 6.2 17 431-447 131-147 (156)
433 cd01018 ZntC Metal binding pro 26.4 5.2E+02 0.011 23.8 10.2 45 100-146 205-251 (266)
434 TIGR00345 arsA arsenite-activa 26.3 2.9E+02 0.0063 25.9 7.6 23 30-54 3-25 (284)
435 PRK08993 2-deoxy-D-gluconate 3 26.3 3.1E+02 0.0066 24.8 7.7 32 14-50 11-42 (253)
436 COG0467 RAD55 RecA-superfamily 26.3 1.1E+02 0.0025 28.1 4.8 42 14-57 25-66 (260)
437 cd03412 CbiK_N Anaerobic cobal 26.2 1.3E+02 0.0028 24.3 4.5 37 284-320 2-40 (127)
438 PRK14092 2-amino-4-hydroxy-6-h 26.2 1.6E+02 0.0034 25.2 5.1 30 283-312 7-36 (163)
439 cd03114 ArgK-like The function 26.0 3.8E+02 0.0083 22.2 10.6 35 15-51 2-36 (148)
440 PRK12815 carB carbamoyl phosph 25.8 6.6E+02 0.014 28.8 11.4 40 11-52 554-599 (1068)
441 PRK00005 fmt methionyl-tRNA fo 25.7 4.5E+02 0.0098 25.0 8.8 31 13-50 1-31 (309)
442 PRK08322 acetolactate synthase 25.6 1.4E+02 0.003 31.1 5.8 27 351-377 64-96 (547)
443 PRK13230 nitrogenase reductase 25.5 1.2E+02 0.0026 28.3 4.8 37 12-50 1-37 (279)
444 cd02040 NifH NifH gene encodes 25.4 1.2E+02 0.0025 28.0 4.7 37 12-50 1-37 (270)
445 TIGR01744 XPRTase xanthine pho 25.3 1.5E+02 0.0033 25.9 5.1 28 114-141 50-79 (191)
446 TIGR01369 CPSaseII_lrg carbamo 25.3 7.7E+02 0.017 28.2 11.8 39 12-52 554-598 (1050)
447 TIGR03877 thermo_KaiC_1 KaiC d 25.2 4E+02 0.0087 24.1 8.1 41 14-56 23-63 (237)
448 PRK10427 putative PTS system f 25.2 1.5E+02 0.0032 23.6 4.5 38 13-52 3-43 (114)
449 PF03693 RHH_2: Uncharacterise 25.2 1.6E+02 0.0035 21.6 4.4 50 412-469 30-79 (80)
450 PRK13695 putative NTPase; Prov 25.2 4.2E+02 0.0091 22.4 8.5 36 13-50 1-36 (174)
451 PRK13604 luxD acyl transferase 25.1 1.4E+02 0.003 28.4 5.1 37 11-49 35-71 (307)
452 PRK13059 putative lipid kinase 25.0 2.2E+02 0.0047 26.9 6.5 66 299-378 19-90 (295)
453 PF05728 UPF0227: Uncharacteri 24.8 2E+02 0.0043 25.1 5.7 44 101-147 49-93 (187)
454 TIGR02201 heptsyl_trn_III lipo 24.7 5.3E+02 0.012 24.7 9.4 37 101-143 251-287 (344)
455 PLN00016 RNA-binding protein; 24.6 93 0.002 30.5 4.1 39 12-52 52-90 (378)
456 COG2210 Peroxiredoxin family p 24.6 1.6E+02 0.0034 24.3 4.5 43 16-60 7-49 (137)
457 KOG0832 Mitochondrial/chloropl 24.6 77 0.0017 28.4 3.0 112 22-145 90-206 (251)
458 PRK11064 wecC UDP-N-acetyl-D-m 24.5 99 0.0022 30.9 4.3 33 12-51 3-35 (415)
459 PRK00170 azoreductase; Reviewe 24.5 1.4E+02 0.0031 26.0 4.9 37 12-50 1-43 (201)
460 PF00185 OTCace: Aspartate/orn 24.5 1.8E+02 0.0039 24.5 5.3 36 12-52 2-37 (158)
461 TIGR00147 lipid kinase, YegS/R 24.4 2.2E+02 0.0048 26.7 6.5 68 298-378 18-91 (293)
462 PRK13197 pyrrolidone-carboxyla 24.4 2.7E+02 0.0058 25.0 6.5 27 12-38 1-29 (215)
463 TIGR02329 propionate_PrpR prop 24.3 2.7E+02 0.0058 28.9 7.4 41 99-144 132-172 (526)
464 TIGR01832 kduD 2-deoxy-D-gluco 24.3 2.9E+02 0.0064 24.7 7.2 33 14-51 6-38 (248)
465 PF02635 DrsE: DsrE/DsrF-like 24.3 2.9E+02 0.0063 21.3 6.4 45 13-59 1-51 (122)
466 PF07801 DUF1647: Protein of u 24.2 1.7E+02 0.0037 24.2 4.8 65 10-74 57-121 (142)
467 PRK10916 ADP-heptose:LPS hepto 24.2 1.4E+02 0.003 28.9 5.2 102 14-143 182-288 (348)
468 PRK05703 flhF flagellar biosyn 24.2 3.2E+02 0.0068 27.5 7.7 40 13-54 222-263 (424)
469 PHA02754 hypothetical protein; 24.1 1.2E+02 0.0027 20.4 3.2 24 419-447 7-30 (67)
470 COG2179 Predicted hydrolase of 24.0 1.6E+02 0.0036 25.1 4.7 42 98-141 48-90 (175)
471 PF00289 CPSase_L_chain: Carba 23.9 1E+02 0.0022 24.3 3.4 67 299-367 12-89 (110)
472 cd06559 Endonuclease_V Endonuc 23.9 83 0.0018 28.0 3.2 38 101-141 83-127 (208)
473 PRK04328 hypothetical protein; 23.6 5.7E+02 0.012 23.3 10.6 41 14-56 25-65 (249)
474 PRK07710 acetolactate synthase 23.5 2.4E+02 0.0052 29.6 7.1 27 351-377 79-111 (571)
475 PLN00141 Tic62-NAD(P)-related 23.5 1.6E+02 0.0035 26.8 5.2 37 9-51 14-50 (251)
476 PRK13869 plasmid-partitioning 23.5 1.3E+02 0.0028 30.0 4.8 36 12-49 121-157 (405)
477 PTZ00345 glycerol-3-phosphate 23.4 1.2E+02 0.0026 29.8 4.4 36 10-52 9-51 (365)
478 PRK06731 flhF flagellar biosyn 23.4 6.1E+02 0.013 23.6 9.5 39 13-53 76-114 (270)
479 PRK11780 isoprenoid biosynthes 23.3 1.7E+02 0.0036 26.3 5.1 39 12-52 1-43 (217)
480 PF02702 KdpD: Osmosensitive K 23.3 1.4E+02 0.003 26.5 4.2 39 11-51 4-42 (211)
481 PRK14569 D-alanyl-alanine synt 23.3 1.5E+02 0.0033 27.9 5.1 38 11-50 2-43 (296)
482 PF02302 PTS_IIB: PTS system, 23.1 1.4E+02 0.003 22.1 3.9 36 14-51 1-37 (90)
483 KOG2825 Putative arsenite-tran 23.0 3.2E+02 0.0069 25.3 6.5 43 10-54 16-59 (323)
484 COG3349 Uncharacterized conser 22.9 81 0.0018 32.0 3.2 33 13-52 1-33 (485)
485 PRK00048 dihydrodipicolinate r 22.9 2.7E+02 0.0059 25.7 6.6 106 285-401 4-115 (257)
486 cd02065 B12-binding_like B12 b 22.7 1.5E+02 0.0032 23.3 4.3 35 15-51 2-36 (125)
487 PRK14075 pnk inorganic polypho 22.7 1.4E+02 0.0031 27.5 4.6 81 299-425 13-94 (256)
488 TIGR01369 CPSaseII_lrg carbamo 22.6 6.7E+02 0.015 28.7 10.7 41 11-53 5-51 (1050)
489 COG0859 RfaF ADP-heptose:LPS h 22.4 2.2E+02 0.0047 27.5 6.1 99 13-144 176-279 (334)
490 PRK13235 nifH nitrogenase redu 22.4 1.3E+02 0.0029 27.9 4.5 36 12-49 1-36 (274)
491 PF05368 NmrA: NmrA-like famil 22.4 3E+02 0.0064 24.6 6.7 85 29-145 11-104 (233)
492 PRK06703 flavodoxin; Provision 22.4 1.5E+02 0.0032 24.6 4.3 38 12-51 1-39 (151)
493 PF01380 SIS: SIS domain SIS d 22.3 1.9E+02 0.0041 22.9 4.9 37 22-60 62-98 (131)
494 PRK09213 pur operon repressor; 22.3 1.8E+02 0.0039 27.2 5.1 28 114-141 130-159 (271)
495 TIGR01743 purR_Bsub pur operon 22.0 1.8E+02 0.004 27.1 5.1 28 114-141 128-157 (268)
496 COG1797 CobB Cobyrinic acid a, 22.0 84 0.0018 31.3 3.0 110 15-150 3-126 (451)
497 PRK01185 ppnK inorganic polyph 22.0 1.4E+02 0.003 27.9 4.4 53 348-425 52-105 (271)
498 PRK13337 putative lipid kinase 22.0 2.4E+02 0.0052 26.7 6.2 27 352-378 59-91 (304)
499 TIGR01007 eps_fam capsular exo 21.8 2E+02 0.0044 25.2 5.4 37 12-50 17-54 (204)
500 PRK05246 glutathione synthetas 21.8 1.4E+02 0.003 28.5 4.6 40 13-54 2-44 (316)
No 1
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.4e-66 Score=516.42 Aligned_cols=452 Identities=68% Similarity=1.157 Sum_probs=353.8
Q ss_pred ccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCC--CcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhh
Q 012096 7 KATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNP--NVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRAR 84 (471)
Q Consensus 7 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~ 84 (471)
++.++..||+++|+|+.||++|++.||++|+. + ||+|||++++.+...+.+... ..+++|..+|++++.......
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~--~~~G~~VT~~~t~~~~~~i~~~~~-~~gi~fv~lp~~~p~~~~~~~ 81 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLAS--RKPDILITFVVTEEWLGLIGSDPK-PDNIRFATIPNVIPSELVRAA 81 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHc--CCCCcEEEEEeCCchHhHhhccCC-CCCEEEEECCCCCCCcccccc
Confidence 45567789999999999999999999999999 8 999999999998877766422 237999999986655433234
Q ss_pred cHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCC
Q 012096 85 DFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHF 164 (471)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (471)
++..++..+...+...++++++++. .++|+||+|.++.|+..+|+++|||++.+++++...++.+.++......+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 82 DFPGFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 5556666655567778888888764 2689999999999999999999999999999999877776665433322222
Q ss_pred CCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccc
Q 012096 165 PVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYP 244 (471)
Q Consensus 165 p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 244 (471)
|.............+|+++.+...+++.+........++..........+++.+++||+++||+.++++.+..++.+++.
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~ 238 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYP 238 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEE
Confidence 22111000112235788877777788876543333334555555555677889999999999999999988756668999
Q ss_pred cccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 012096 245 IGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTS 324 (471)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~ 324 (471)
|||+.+........ .+... ...+.++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||++..+..
T Consensus 239 iGP~~~~~~~~~~~-~~~~~--~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~ 315 (459)
T PLN02448 239 IGPSIPYMELKDNS-SSSNN--EDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEAS 315 (459)
T ss_pred ecCcccccccCCCc-ccccc--ccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchh
Confidence 99997642111000 00000 0122478899999988899999999999888999999999999999999998875544
Q ss_pred ccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCC
Q 012096 325 WFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEI 404 (471)
Q Consensus 325 ~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 404 (471)
++.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||+|+.+.. ..
T Consensus 316 ~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~-~~ 394 (459)
T PLN02448 316 RLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR-EV 394 (459)
T ss_pred hHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec-cc
Confidence 45444557899999999999999999999999999999999999999999999999999999999987899999864 21
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 405 GSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
.+...+++++|.++|+++|.++.++.++||+||+++++++++++.+||||.+++++||++++.-
T Consensus 395 ~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 395 GEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 1123579999999999999763223479999999999999999999999999999999999753
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-65 Score=507.27 Aligned_cols=437 Identities=28% Similarity=0.470 Sum_probs=341.5
Q ss_pred cccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhc
Q 012096 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARD 85 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~ 85 (471)
|+...+..||+++|++++||++|++.||+.|+. +|+.|||++++.+... .. ....++++..+|+++++.......
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~--~G~~VT~v~T~~n~~~--~~-~~~~~i~~~~ip~glp~~~~~~~~ 75 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHL--KGFSITIAQTKFNYFS--PS-DDFTDFQFVTIPESLPESDFKNLG 75 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHc--CCCEEEEEeCcccccc--cc-cCCCCeEEEeCCCCCCcccccccC
Confidence 555556689999999999999999999999999 9999999999876421 11 111269999999888753211123
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhh-cCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCC-
Q 012096 86 FLAFVESVSTKMEAPFEKVLDFLQV-EAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGH- 163 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~- 163 (471)
...++..+...+...++++++++.. +..++++||+|.+..|+..+|+++|||.+.|++++++.++.+.++..+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~ 155 (451)
T PLN02410 76 PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVL 155 (451)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCC
Confidence 4456666666777788888887642 22457999999999999999999999999999999998877666543332211
Q ss_pred CCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCcc
Q 012096 164 FPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVY 243 (471)
Q Consensus 164 ~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 243 (471)
.|..... ......+|+++++...+++.+............... ....+++++++|||++||+.++++.+..+.++++
T Consensus 156 ~~~~~~~--~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 232 (451)
T PLN02410 156 APLKEPK--GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRTASSVIINTASCLESSSLSRLQQQLQIPVY 232 (451)
T ss_pred CCccccc--cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhcccCCEEEEeChHHhhHHHHHHHHhccCCCEE
Confidence 1211110 112235788776667777754321111222222222 2356788999999999999999999875557899
Q ss_pred ccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC-
Q 012096 244 PIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGD- 322 (471)
Q Consensus 244 ~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~- 322 (471)
+|||++.......+. +...+++.+||+.+++++||||||||....+.+++.+++.+|+.++++|||+++..
T Consensus 233 ~vGpl~~~~~~~~~~--------~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~ 304 (451)
T PLN02410 233 PIGPLHLVASAPTSL--------LEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGS 304 (451)
T ss_pred EecccccccCCCccc--------cccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCc
Confidence 999998643211000 02234578999999889999999999999999999999999999999999999732
Q ss_pred ----------CCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhh
Q 012096 323 ----------TSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVED 392 (471)
Q Consensus 323 ----------~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~ 392 (471)
++++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.
T Consensus 305 ~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~ 384 (451)
T PLN02410 305 VRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECV 384 (451)
T ss_pred ccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHH
Confidence 2345556778999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 012096 393 WKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISL 467 (471)
Q Consensus 393 lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (471)
+|+|+.++. .+++++|.++|+++|.++.+ ++||++|+++++++++++++||||.+++++||+.+..
T Consensus 385 ~~~G~~~~~-------~~~~~~v~~av~~lm~~~~~--~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 385 WKIGIQVEG-------DLDRGAVERAVKRLMVEEEG--EEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred hCeeEEeCC-------cccHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 899999863 36999999999999977544 7999999999999999999999999999999999864
No 3
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.6e-65 Score=503.27 Aligned_cols=448 Identities=30% Similarity=0.524 Sum_probs=348.5
Q ss_pred cccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCC------C---CCCeEEEecCCCC
Q 012096 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHG------N---HNNIRFETIPNVI 76 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~------~---~~~~~~~~ip~~~ 76 (471)
|.+.....||+++|+|++||++|++.||+.|+. +|..|||++++.+...+.+... . ...+.|..+|+++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~--~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLAS--KGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHh--CCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCC
Confidence 455556689999999999999999999999999 9999999999976665442110 0 1136777788887
Q ss_pred CCchhhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhH
Q 012096 77 PSELVRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFE 156 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (471)
+++.+...++..++..+...+.+.++++++.+..+..++++||+|.+..|+..+|+++|||.+.|++++++.++.+.++.
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 65433233455566666556788889988876432234599999999999999999999999999999999888777652
Q ss_pred HHHhcCCCCCCcccCCccccccCCCCCcCCcCCCCccccC--CCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHH
Q 012096 157 LLVQNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYG--SGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTL 234 (471)
Q Consensus 157 ~~~~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 234 (471)
....+...... ......+|+++.+...+++.++.. .....++.+.+..+...+++++++|||++||+.+++..
T Consensus 159 ----~~~~~~~~~~~-~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 233 (480)
T PLN02555 159 ----HGLVPFPTETE-PEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM 233 (480)
T ss_pred ----hcCCCcccccC-CCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 11122111100 112235889887888888876642 12233444555556677889999999999999999988
Q ss_pred HhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCc
Q 012096 235 KAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVR 314 (471)
Q Consensus 235 ~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~ 314 (471)
+. ..+ ++.|||+...........+ ...+..++++.+||+.++++++|||||||+...+.+++.+++.+++..+++
T Consensus 234 ~~-~~~-v~~iGPl~~~~~~~~~~~~---~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~ 308 (480)
T PLN02555 234 SK-LCP-IKPVGPLFKMAKTPNSDVK---GDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVS 308 (480)
T ss_pred hh-CCC-EEEeCcccCcccccccccc---ccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCe
Confidence 76 334 9999999764211100000 001234567999999998888999999999999999999999999999999
Q ss_pred EEEEEcCC-----------CCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceeccccccccc
Q 012096 315 FFWVSRGD-----------TSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQV 383 (471)
Q Consensus 315 vi~~~~~~-----------~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~ 383 (471)
|||+++.. ++++..+.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+
T Consensus 309 flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~ 388 (480)
T PLN02555 309 FLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQV 388 (480)
T ss_pred EEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccH
Confidence 99998631 1234445667999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHH
Q 012096 384 PNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLN 463 (471)
Q Consensus 384 ~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (471)
.||+++++.||+|+.+.. .......++.++|.++|++++.++.| +.+|+||+++++++++++++||||..++++||+
T Consensus 389 ~Na~~~~~~~gvGv~l~~-~~~~~~~v~~~~v~~~v~~vm~~~~g--~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~ 465 (480)
T PLN02555 389 TDAVYLVDVFKTGVRLCR-GEAENKLITREEVAECLLEATVGEKA--AELKQNALKWKEEAEAAVAEGGSSDRNFQEFVD 465 (480)
T ss_pred HHHHHHHHHhCceEEccC-CccccCcCcHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999988999999953 11011458999999999999976544 899999999999999999999999999999999
Q ss_pred HHHhh
Q 012096 464 DISLA 468 (471)
Q Consensus 464 ~~~~~ 468 (471)
++...
T Consensus 466 ~i~~~ 470 (480)
T PLN02555 466 KLVRK 470 (480)
T ss_pred HHHhc
Confidence 99864
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-64 Score=499.89 Aligned_cols=430 Identities=25% Similarity=0.420 Sum_probs=333.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
.||+++|++++||++|++.||+.|+. +|++|||++++.+...+........++++..+|++++... ..++..++..
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~a 82 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLS--RGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIENS 82 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHHH
Confidence 49999999999999999999999999 9999999999987765544311122699999998775321 2234444545
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccCC
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERG 172 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (471)
+...+...++++++++... .++++||+|.+..|+..+|+++|||.+.|+++..+.++.+.++......+..+.......
T Consensus 83 ~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 83 MENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 4446788899998887532 245999999999999999999999999999999988877666544333222221100000
Q ss_pred ccccccCCCCCcCCcCCCCccccCC--CchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhc----CCCCccccc
Q 012096 173 EEVVDYIPGLASTKLADLPTIFYGS--GRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAK----FPFPVYPIG 246 (471)
Q Consensus 173 ~~~~~~ip~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~----~~~~~~~vG 246 (471)
..+...+|+++.+...+++.++... ....+..+.+..+...+++++++|||++||+..++..+.. ..++++.||
T Consensus 162 ~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~iG 241 (448)
T PLN02562 162 LEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQIG 241 (448)
T ss_pred ccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEec
Confidence 1122357888777778888765311 2233455555556677789999999999999888865431 457899999
Q ss_pred cCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCc-CCCHHHHHHHHHHHHhCCCcEEEEEcCC---
Q 012096 247 PTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLW-SVSSVQMDEIVAGVRNSGVRFFWVSRGD--- 322 (471)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~-~~~~~~~~~~~~al~~~~~~vi~~~~~~--- 322 (471)
|++......... ...++.+.++.+||+.++++++|||||||+. ..+.+++++++.+|+.++++|||+++..
T Consensus 242 pl~~~~~~~~~~-----~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~ 316 (448)
T PLN02562 242 PLHNQEATTITK-----PSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWRE 316 (448)
T ss_pred CcccccccccCC-----CccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCchh
Confidence 998653211000 0001223456799999988899999999987 5789999999999999999999999642
Q ss_pred --CCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeee
Q 012096 323 --TSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVK 400 (471)
Q Consensus 323 --~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 400 (471)
++++..+.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|+.+.
T Consensus 317 ~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~ 396 (448)
T PLN02562 317 GLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS 396 (448)
T ss_pred hCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC
Confidence 234444567899999999999999999999999999999999999999999999999999999999987678887775
Q ss_pred cCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 401 KPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
. ++.++|.++|+++|+| ++||+||++++++++++ .+||||..++++||++++
T Consensus 397 ~--------~~~~~l~~~v~~~l~~-----~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 397 G--------FGQKEVEEGLRKVMED-----SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred C--------CCHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 4 6999999999999987 89999999999999887 668999999999999874
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.6e-63 Score=490.16 Aligned_cols=430 Identities=29% Similarity=0.492 Sum_probs=335.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCc-hhhhhcHHHH
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSE-LVRARDFLAF 89 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~-~~~~~~~~~~ 89 (471)
+..||+++|++++||++|++.||+.|+. +|+.|||++++.+...+.... ..++++..+|+++++. .+...++..+
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~--~G~~vT~v~t~~~~~~~~~~~--~~~i~~~~ipdglp~~~~~~~~~~~~~ 79 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHS--KGFKTTHTLTTFIFNTIHLDP--SSPISIATISDGYDQGGFSSAGSVPEY 79 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHc--CCCEEEEEECCchhhhcccCC--CCCEEEEEcCCCCCCcccccccCHHHH
Confidence 3469999999999999999999999999 999999999997765553321 1269999999988762 2333345567
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCc-eEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCc
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVV-SAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVEL 168 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~-D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (471)
+..+...+.+.++++++.+..+ .+| |+||+|.+.+|+..+|+++|||.+.|++++++.+..+.+. .. ...
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~------ 150 (449)
T PLN02173 80 LQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG------ 150 (449)
T ss_pred HHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC------
Confidence 7777667888899988876432 134 9999999999999999999999999999988876554432 11 110
Q ss_pred ccCCccccccCCCCCcCCcCCCCccccC--CCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccc
Q 012096 169 SERGEEVVDYIPGLASTKLADLPTIFYG--SGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIG 246 (471)
Q Consensus 169 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 246 (471)
.....+|+++.+...+++.++.. .....++...+......+++.+++|||+++|+..+++.+. . ++++.||
T Consensus 151 -----~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~-~-~~v~~VG 223 (449)
T PLN02173 151 -----SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK-V-CPVLTIG 223 (449)
T ss_pred -----CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh-c-CCeeEEc
Confidence 11123677776777888876642 1223344455555667788999999999999999998876 4 3699999
Q ss_pred cCCCCccccccc-cccccc-CCC--CCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 012096 247 PTIPYFEIKSNL-LTSTSL-NIN--NEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGD 322 (471)
Q Consensus 247 p~~~~~~~~~~~-~~~~~~-~~~--~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~ 322 (471)
|+++........ ...... ..| ..++++.+||+.++++++|||||||+...+.+++.+++.+| .+.+|+|++...
T Consensus 224 Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~ 301 (449)
T PLN02173 224 PTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS 301 (449)
T ss_pred ccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc
Confidence 997532100000 000000 011 12345899999999999999999999999999999999999 667799999742
Q ss_pred -----CCcccccc-CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcce
Q 012096 323 -----TSWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIG 396 (471)
Q Consensus 323 -----~~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G 396 (471)
++++.++. ++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.||+|
T Consensus 302 ~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~G 381 (449)
T PLN02173 302 EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVG 381 (449)
T ss_pred chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCce
Confidence 23444444 578999999999999999999999999999999999999999999999999999999999888999
Q ss_pred eeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 397 WKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
+.+.. ++ ....++.++|.++|++++.++.+ +.+|+||+++++++++++++||||.+++++|++++.
T Consensus 382 v~v~~-~~-~~~~~~~e~v~~av~~vm~~~~~--~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 382 VRVKA-EK-ESGIAKREEIEFSIKEVMEGEKS--KEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred EEEee-cc-cCCcccHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 99875 22 11246999999999999977544 899999999999999999999999999999999885
No 6
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.9e-63 Score=489.19 Aligned_cols=429 Identities=25% Similarity=0.465 Sum_probs=331.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc-hhhhcCCCCCCCCeEEEecCCCCCCchh-hhhcHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW-LSFIGSGHGNHNNIRFETIPNVIPSELV-RARDFLAF 89 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~ip~~~~~~~~-~~~~~~~~ 89 (471)
+.||+++|++++||++|++.||+.|+.+ +|+.|||++++.+ ...+.......+++++..++++++.... ...++..+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~-~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKT-TGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhC-CCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 3599999999999999999999999951 5999999999854 2221111111136999999988876432 23355566
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcc
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELS 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (471)
+......+.+.++++++++...+.++++||+|.+..|+..+|+++|||.+.|++++++.++.+.++...
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~----------- 150 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG----------- 150 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc-----------
Confidence 677777888889998887642213469999999999999999999999999999999988776654310
Q ss_pred cCCccccccCCCCCcCCcCCCCccccCC--CchHHHHHHHHhhccc--cccEEEEcchHHhhHHHHHHHHhcCCCCcccc
Q 012096 170 ERGEEVVDYIPGLASTKLADLPTIFYGS--GRQTLQRALESVSKVS--KAQCLLLSSVYELEAKVNDTLKAKFPFPVYPI 245 (471)
Q Consensus 170 ~~~~~~~~~ip~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 245 (471)
......+|+++.+...+++.++... .......+.+..+... .++++++|||++||+..++..+. . +++.|
T Consensus 151 ---~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~--~v~~V 224 (455)
T PLN02152 151 ---NNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN-I--EMVAV 224 (455)
T ss_pred ---CCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc-C--CEEEE
Confidence 0112347888777788888866421 2222333333333332 24689999999999999998765 2 69999
Q ss_pred ccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC---
Q 012096 246 GPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGD--- 322 (471)
Q Consensus 246 Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~--- 322 (471)
||+++.........+++. ..+..+.++.+||+.+++++||||||||+..++.+++.+++.+|+.++++|||+++..
T Consensus 225 GPL~~~~~~~~~~~~~~~-~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~ 303 (455)
T PLN02152 225 GPLLPAEIFTGSESGKDL-SVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNR 303 (455)
T ss_pred cccCccccccccccCccc-cccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 999864210000000000 0012235799999999888999999999999999999999999999999999999752
Q ss_pred --------------CCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhh
Q 012096 323 --------------TSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKL 388 (471)
Q Consensus 323 --------------~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 388 (471)
++++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++
T Consensus 304 ~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~ 383 (455)
T PLN02152 304 EAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKL 383 (455)
T ss_pred ccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHH
Confidence 123333467889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHH
Q 012096 389 IVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDI 465 (471)
Q Consensus 389 v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (471)
+++.||+|+.+.. +. .+.++.++|.++|+++++++ + ..||+||+++++++++++++||||.+++++||+++
T Consensus 384 ~~~~~~~G~~~~~-~~--~~~~~~e~l~~av~~vm~~~-~--~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 384 LEEIWKTGVRVRE-NS--EGLVERGEIRRCLEAVMEEK-S--VELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHhCceEEeec-Cc--CCcCcHHHHHHHHHHHHhhh-H--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9987788888764 21 13469999999999999753 1 57999999999999999999999999999999987
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3e-63 Score=490.85 Aligned_cols=426 Identities=23% Similarity=0.372 Sum_probs=328.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHH-hcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCC----CCCCchhhhhcH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLV-SRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPN----VIPSELVRARDF 86 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~-~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~----~~~~~~~~~~~~ 86 (471)
+.||+++|++++||++|++.||+.|+ . +|+.|||++++.+...+.+......++++..+|. ++++.. .+.
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~--~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~ 79 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSAN--HGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHV 79 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhC--CCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccH
Confidence 46999999999999999999999998 7 8999999999977655422211112688888884 333111 122
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCC
Q 012096 87 LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPV 166 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (471)
...+..+...+...++++++++. .+|++||+|.+.+|+..+|+++|||.+.|+++.++.++.+.+++........+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 22333444556677888887763 268999999999999999999999999999999988776665543221111110
Q ss_pred CcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhc--C----CC
Q 012096 167 ELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAK--F----PF 240 (471)
Q Consensus 167 ~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~--~----~~ 240 (471)
.. ...+..+|+++.+...+++..+.......+..+.+......+++++++|||++||+.+++..+.. + .+
T Consensus 157 ~~----~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 157 TV----QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred cc----CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 00 11234588887777778886443223234455555556677899999999999999999987652 1 24
Q ss_pred CccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 012096 241 PVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSR 320 (471)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~ 320 (471)
+++.|||+++..... ..++++.+||+.+++++||||||||+..++.+++++++.+|+.++++|||++.
T Consensus 233 ~v~~VGPl~~~~~~~------------~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r 300 (481)
T PLN02992 233 PVYPIGPLCRPIQSS------------KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVR 300 (481)
T ss_pred ceEEecCccCCcCCC------------cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 699999998632110 23456899999998889999999999999999999999999999999999996
Q ss_pred CCC-----------------CccccccCC---------CceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCcee
Q 012096 321 GDT-----------------SWFKDGCVD---------RGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPML 374 (471)
Q Consensus 321 ~~~-----------------~~~~~~~~~---------nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v 374 (471)
... +.....+|+ ++.+.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l 380 (481)
T PLN02992 301 PPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMI 380 (481)
T ss_pred CCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEE
Confidence 311 001112333 466779999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHh--cCC
Q 012096 375 TFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVA--ENG 452 (471)
Q Consensus 375 ~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~--~~g 452 (471)
++|+++||+.||+++++.+|+|+.++. .. ..++.++|.++|++++.++++ +.||++++++++++++++. +||
T Consensus 381 ~~P~~~DQ~~na~~~~~~~g~gv~~~~-~~---~~~~~~~l~~av~~vm~~~~g--~~~r~~a~~~~~~a~~Av~~~~GG 454 (481)
T PLN02992 381 AWPLFAEQNMNAALLSDELGIAVRSDD-PK---EVISRSKIEALVRKVMVEEEG--EEMRRKVKKLRDTAEMSLSIDGGG 454 (481)
T ss_pred ecCccchhHHHHHHHHHHhCeeEEecC-CC---CcccHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999656799999975 21 358999999999999987544 7999999999999999994 699
Q ss_pred CcHHHHHHHHHHHHh
Q 012096 453 SSITNFDAFLNDISL 467 (471)
Q Consensus 453 ~~~~~~~~~~~~~~~ 467 (471)
||.+++++|++++.+
T Consensus 455 SS~~~l~~~v~~~~~ 469 (481)
T PLN02992 455 VAHESLCRVTKECQR 469 (481)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999999876
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.1e-63 Score=491.01 Aligned_cols=438 Identities=27% Similarity=0.496 Sum_probs=335.6
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHH--HHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcH
Q 012096 9 TGRMCHIVALPYPGRGHINPMMNLCKL--LVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDF 86 (471)
Q Consensus 9 ~~~~~~il~~~~~~~GH~~p~l~La~~--L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 86 (471)
.....||+++|+++.||++|++.||+. |++ +|+.|||++++.+.+.+...+.....+++..+|+++++... .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~--~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~ 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSS--KNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAP 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhc--CCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCH
Confidence 344579999999999999999999999 558 99999999999887766443222236888888888775432 244
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCC
Q 012096 87 LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPV 166 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (471)
..++..+...+...+++++++. +||+||+|.+..|+..+|+++|||.+.|++..++.+..+.++... ....+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~-----~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~~ 153 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEEK-----RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFPD 153 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhcC-----CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCCc
Confidence 4566666556666677776653 599999999999999999999999999999999888776654321 111111
Q ss_pred CcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHH-HHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCcccc
Q 012096 167 ELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRAL-ESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPI 245 (471)
Q Consensus 167 ~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~v 245 (471)
. .. ......+|+++.+...+++.++.......+.... +..+....++++++||++++|+.+++..+. . +++++|
T Consensus 154 ~--~~-~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~~V 228 (456)
T PLN02210 154 L--ED-LNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVIPI 228 (456)
T ss_pred c--cc-cCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEEEE
Confidence 1 00 0112347887767778888765432222233333 222345667899999999999999998876 4 579999
Q ss_pred ccCCCCcc--cccccc-cccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Q 012096 246 GPTIPYFE--IKSNLL-TSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGD 322 (471)
Q Consensus 246 Gp~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~ 322 (471)
||+++... ...... .+.....|..++++.+||+.++++++|||||||....+.+++.+++.+|+..+++|||+++.+
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~ 308 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK 308 (456)
T ss_pred cccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 99985211 000000 000001123456689999999888999999999999999999999999999999999999753
Q ss_pred C-----Ccccccc-CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcce
Q 012096 323 T-----SWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIG 396 (471)
Q Consensus 323 ~-----~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G 396 (471)
. ..+.+.. ++++.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|
T Consensus 309 ~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G 388 (456)
T PLN02210 309 EKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIG 388 (456)
T ss_pred ccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeE
Confidence 2 2233333 367888999999999999999999999999999999999999999999999999999999767999
Q ss_pred eeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 397 WKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
+.+.. ++ ..+.++.++|.++|++++.++.| ++||+||+++++.+++++++||||.+++++||+++.
T Consensus 389 ~~l~~-~~-~~~~~~~~~l~~av~~~m~~~~g--~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 389 VRMRN-DA-VDGELKVEEVERCIEAVTEGPAA--ADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred EEEec-cc-cCCcCCHHHHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99975 21 11358999999999999977544 789999999999999999999999999999999986
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=4.9e-63 Score=488.46 Aligned_cols=438 Identities=23% Similarity=0.423 Sum_probs=330.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCC--cEEEEEECccchh-h----hcCCCCCCCCeEEEecCCCCC-Cchhhh
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPN--VFITFVVTEEWLS-F----IGSGHGNHNNIRFETIPNVIP-SELVRA 83 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rG--h~Vt~~~~~~~~~-~----~~~~~~~~~~~~~~~ip~~~~-~~~~~~ 83 (471)
+.|++++|++++||++|++.||+.|+. +| ..|||++++.+.. . +.......+++++..+|+... ......
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~--~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIE--QDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHh--CCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 369999999999999999999999999 88 9999999986542 1 111111112699999996432 111112
Q ss_pred hcHHHHHHHHHHhchH----HHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHH
Q 012096 84 RDFLAFVESVSTKMEA----PFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLV 159 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (471)
.+....+..+...+.+ .+.+++++...+..++++||+|.+..|+..+|+++|||.+.|++++++.++.+.++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 3444444444445533 345555443211123499999999999999999999999999999998887776654321
Q ss_pred hcC-CCCCCcccCCccccccCCCC-CcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHh-
Q 012096 160 QNG-HFPVELSERGEEVVDYIPGL-ASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKA- 236 (471)
Q Consensus 160 ~~~-~~p~~~~~~~~~~~~~ip~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~- 236 (471)
... ..+. .. ......+|++ +.+...+++.++.. ... +..+.+......+++.+++||++++|+++++..+.
T Consensus 161 ~~~~~~~~--~~--~~~~~~vPgl~~~l~~~dlp~~~~~-~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~ 234 (468)
T PLN02207 161 SKDTSVFV--RN--SEEMLSIPGFVNPVPANVLPSALFV-EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDE 234 (468)
T ss_pred ccccccCc--CC--CCCeEECCCCCCCCChHHCcchhcC-Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhc
Confidence 110 0100 00 0122358888 57888888876642 111 33444444567789999999999999999888854
Q ss_pred cCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEE
Q 012096 237 KFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFF 316 (471)
Q Consensus 237 ~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi 316 (471)
...++++.|||++......... . ....++++.+||+.++++++|||||||....+.+++++++.+|+.++++||
T Consensus 235 ~~~p~v~~VGPl~~~~~~~~~~----~--~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~fl 308 (468)
T PLN02207 235 QNYPSVYAVGPIFDLKAQPHPE----Q--DLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFL 308 (468)
T ss_pred cCCCcEEEecCCcccccCCCCc----c--ccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEE
Confidence 2557899999998643211000 0 001235799999999888999999999999999999999999999999999
Q ss_pred EEEcCCC--------CccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhh
Q 012096 317 WVSRGDT--------SWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKL 388 (471)
Q Consensus 317 ~~~~~~~--------~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 388 (471)
|+++... +++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++
T Consensus 309 W~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~ 388 (468)
T PLN02207 309 WSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFL 388 (468)
T ss_pred EEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHH
Confidence 9998521 34445567899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcceeeeecCCC--CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 389 IVEDWKIGWKVKKPEI--GSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 389 v~~~lG~G~~l~~~~~--~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
+++.+|+|+.+.. +. .....++.++|.++|++++.++ + ++||+||+++++++++++.+||||.+++++||+++.
T Consensus 389 ~~~~~gvGv~~~~-~~~~~~~~~v~~e~i~~av~~vm~~~-~--~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~ 464 (468)
T PLN02207 389 MVKELKLAVELKL-DYRVHSDEIVNANEIETAIRCVMNKD-N--NVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVI 464 (468)
T ss_pred HHHHhCceEEEec-ccccccCCcccHHHHHHHHHHHHhcc-h--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 8877799998753 10 0012469999999999999732 2 899999999999999999999999999999999987
Q ss_pred h
Q 012096 467 L 467 (471)
Q Consensus 467 ~ 467 (471)
.
T Consensus 465 ~ 465 (468)
T PLN02207 465 G 465 (468)
T ss_pred h
Confidence 5
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=9.6e-63 Score=490.38 Aligned_cols=441 Identities=26% Similarity=0.439 Sum_probs=330.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC----CCCCCchhhhh-
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP----NVIPSELVRAR- 84 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip----~~~~~~~~~~~- 84 (471)
.++.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+........++++..+| ++++++.+...
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~--~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~ 84 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLAL--RGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKD 84 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhh
Confidence 34589999999999999999999999999 999999999998877665432112257776544 13333222211
Q ss_pred ---cHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 85 ---DFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 85 ---~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
+....+......+...+.+++++.. .++++||+|.+..|+..+|+++|||.+.|++++++.++.+.++...
T Consensus 85 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~---~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~--- 158 (477)
T PLN02863 85 LPPSGFPLMIHALGELYAPLLSWFRSHP---SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE--- 158 (477)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhCC---CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc---
Confidence 2223343444455556666666542 3689999999999999999999999999999999998887765321
Q ss_pred CCCCCCc---ccCCccccccCCCCCcCCcCCCCccccC--CCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHh
Q 012096 162 GHFPVEL---SERGEEVVDYIPGLASTKLADLPTIFYG--SGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKA 236 (471)
Q Consensus 162 ~~~p~~~---~~~~~~~~~~ip~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~ 236 (471)
.|... ..........+|+++.+...+++.+++. ..........+.......++++++|||+++|+.+++..+.
T Consensus 159 --~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 159 --MPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred --ccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 11110 0000112235788887888888876642 1222334444444445677889999999999999999987
Q ss_pred cCC-CCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcE
Q 012096 237 KFP-FPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRF 315 (471)
Q Consensus 237 ~~~-~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~v 315 (471)
.+. ++++.|||+++............+. .+..++++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|
T Consensus 237 ~~~~~~v~~IGPL~~~~~~~~~~~~~~~~-~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 237 ELGHDRVWAVGPILPLSGEKSGLMERGGP-SSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred hcCCCCeEEeCCCcccccccccccccCCc-ccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 554 6899999998643211000000000 00124579999999988899999999999999999999999999999999
Q ss_pred EEEEcCCC----------Ccccccc-CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccc
Q 012096 316 FWVSRGDT----------SWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVP 384 (471)
Q Consensus 316 i~~~~~~~----------~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~ 384 (471)
||+++... +++.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.
T Consensus 316 lw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 395 (477)
T PLN02863 316 IWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFV 395 (477)
T ss_pred EEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchh
Confidence 99997421 1121111 235667799999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHH
Q 012096 385 NSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLND 464 (471)
Q Consensus 385 na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (471)
||+++++.||+|+.+.. . +...++.+++.++|++++.++ +.||+||+++++++++++.+||||.+++++||++
T Consensus 396 na~~v~~~~gvG~~~~~-~--~~~~~~~~~v~~~v~~~m~~~----~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~ 468 (477)
T PLN02863 396 NASLLVDELKVAVRVCE-G--ADTVPDSDELARVFMESVSEN----QVERERAKELRRAALDAIKERGSSVKDLDGFVKH 468 (477)
T ss_pred hHHHHHHhhceeEEecc-C--CCCCcCHHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 99998877899999854 1 113468999999999998421 8999999999999999999999999999999999
Q ss_pred HHhh
Q 012096 465 ISLA 468 (471)
Q Consensus 465 ~~~~ 468 (471)
++..
T Consensus 469 i~~~ 472 (477)
T PLN02863 469 VVEL 472 (477)
T ss_pred HHHh
Confidence 9864
No 11
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.7e-62 Score=490.79 Aligned_cols=437 Identities=28% Similarity=0.482 Sum_probs=325.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCC--cEEEEEECccchhhh-------cCCCC-CCCCeEEEecCCCCCCchh
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPN--VFITFVVTEEWLSFI-------GSGHG-NHNNIRFETIPNVIPSELV 81 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rG--h~Vt~~~~~~~~~~~-------~~~~~-~~~~~~~~~ip~~~~~~~~ 81 (471)
++||+++|++++||++|++.||+.|+. +| ..|||++++.+.... ..... ...++++..+|++......
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~--~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVD--SDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHh--CCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc
Confidence 469999999999999999999999999 88 899999998764321 11100 0226999999976642211
Q ss_pred hhhcHHHHHHHHHHhchHHHHHHHHHhhh-cCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHh
Q 012096 82 RARDFLAFVESVSTKMEAPFEKVLDFLQV-EAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQ 160 (471)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 160 (471)
. ..+..++......++..+++++.+... ...+.++||+|.+..|+..+|+++|||++.|+++.++.++.+.++.....
T Consensus 80 ~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~ 158 (481)
T PLN02554 80 D-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYD 158 (481)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhcc
Confidence 1 122233333333333334443332211 11124899999999999999999999999999999999988877654322
Q ss_pred cCCCCCCcccCCccccccCCCCC-cCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhc--
Q 012096 161 NGHFPVELSERGEEVVDYIPGLA-STKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAK-- 237 (471)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~ip~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~-- 237 (471)
....+...... ......+|++. ++...+++.+.. ....+..+........+++++++|+++++|+.+.......
T Consensus 159 ~~~~~~~~~~~-~~~~v~iPgl~~pl~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~ 235 (481)
T PLN02554 159 EKKYDVSELED-SEVELDVPSLTRPYPVKCLPSVLL--SKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSG 235 (481)
T ss_pred ccccCccccCC-CCceeECCCCCCCCCHHHCCCccc--CHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhccc
Confidence 21111110000 11223478873 567777776554 1233444455556677899999999999999998888752
Q ss_pred CCCCccccccCCC-CcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEE
Q 012096 238 FPFPVYPIGPTIP-YFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFF 316 (471)
Q Consensus 238 ~~~~~~~vGp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi 316 (471)
..++++.|||++. ........ ...++++.+||+.++++++|||||||+...+.+++.+++.+|+.++++||
T Consensus 236 ~~~~v~~vGpl~~~~~~~~~~~--------~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~fl 307 (481)
T PLN02554 236 DLPPVYPVGPVLHLENSGDDSK--------DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFL 307 (481)
T ss_pred CCCCEEEeCCCccccccccccc--------cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeE
Confidence 3468999999943 22111000 03456799999999888899999999998999999999999999999999
Q ss_pred EEEcCC-------------------CCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceeccc
Q 012096 317 WVSRGD-------------------TSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFP 377 (471)
Q Consensus 317 ~~~~~~-------------------~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P 377 (471)
|++++. ++++..+.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 308 W~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P 387 (481)
T PLN02554 308 WSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWP 387 (481)
T ss_pred EEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecC
Confidence 999752 1233334567899999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhcceeeeecCCC------CCCCccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHhHhc
Q 012096 378 IMMDQVPNSKLIVEDWKIGWKVKKPEI------GSESLVTRDEITELVKRFMD-LNNDERKAMSKRAREVQEICQEAVAE 450 (471)
Q Consensus 378 ~~~DQ~~na~~v~~~lG~G~~l~~~~~------~~~~~~~~~~l~~~i~~~l~-~~~~~~~~~~~~a~~l~~~~~~~~~~ 450 (471)
+++||+.||+++.+.+|+|+.++. .. .....++.++|.++|+++|+ | ++||+||+++++++++++++
T Consensus 388 ~~~DQ~~Na~~~v~~~g~Gv~l~~-~~~~~~~~~~~~~~~~e~l~~av~~vm~~~-----~~~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 388 LYAEQKFNAFEMVEELGLAVEIRK-YWRGDLLAGEMETVTAEEIERGIRCLMEQD-----SDVRKRVKEMSEKCHVALMD 461 (481)
T ss_pred ccccchhhHHHHHHHhCceEEeec-cccccccccccCeEcHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcC
Confidence 999999999665446699999863 10 01135899999999999996 5 89999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 012096 451 NGSSITNFDAFLNDISLA 468 (471)
Q Consensus 451 ~g~~~~~~~~~~~~~~~~ 468 (471)
||||.+++++||+++...
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 999999999999999864
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=5.1e-62 Score=479.20 Aligned_cols=433 Identities=24% Similarity=0.375 Sum_probs=329.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCC-CcEEEEEECccchhhhc--C--CCC-CCCCeEEEecCCCCCCch-hhh
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNP-NVFITFVVTEEWLSFIG--S--GHG-NHNNIRFETIPNVIPSEL-VRA 83 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~r-Gh~Vt~~~~~~~~~~~~--~--~~~-~~~~~~~~~ip~~~~~~~-~~~ 83 (471)
++.||+++|++++||++|++.||+.|+. + |..|||+++..+...+. . ... ...++++..+|.+..++. ...
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~--~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSS--VLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHh--CCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCC
Confidence 3469999999999999999999999997 6 99999999876543321 1 000 011589999985432211 100
Q ss_pred hcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCC-eEEEecchHHHHHHHHhhHHHHhcC
Q 012096 84 RDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIP-VASFWSMSASLFSVFHHFELLVQNG 162 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (471)
.+....+..+...+.+.++++++++. .++++||+|.+.+|+..+|+++||| .+.++++..+.++.+.+++.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~- 155 (470)
T PLN03015 80 ATIFTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV- 155 (470)
T ss_pred ccHHHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc-
Confidence 13443445555678888999998875 2589999999999999999999999 588888888877666665443211
Q ss_pred CCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcC----
Q 012096 163 HFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKF---- 238 (471)
Q Consensus 163 ~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~---- 238 (471)
.+.... ... .+..+|+++.+...+++..+.......+....+......+++++++|||++||+..++..+..+
T Consensus 156 -~~~~~~-~~~-~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 156 -VEGEYV-DIK-EPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred -cccccC-CCC-CeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 111000 001 2245899988888888875542222334444555556788999999999999999999987742
Q ss_pred --CCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEE
Q 012096 239 --PFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFF 316 (471)
Q Consensus 239 --~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi 316 (471)
.++++.|||++.... . . ..++++.+||+.+++++||||||||+..++.+++.+++.+|+.++++||
T Consensus 233 ~~~~~v~~VGPl~~~~~-~--~---------~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~Fl 300 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNV-H--V---------EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFV 300 (470)
T ss_pred ccCCceEEecCCCCCcc-c--c---------cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEE
Confidence 256999999984211 0 0 1234799999999889999999999999999999999999999999999
Q ss_pred EEEcCCC----------CccccccCCC---------ceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceeccc
Q 012096 317 WVSRGDT----------SWFKDGCVDR---------GIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFP 377 (471)
Q Consensus 317 ~~~~~~~----------~~~~~~~~~n---------v~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P 377 (471)
|+++... +.....+|+| +.+.+|+||.+||+|+++++||||||+||+.||+++|||||++|
T Consensus 301 Wv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 301 WVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred EEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecc
Confidence 9996321 1111123333 34569999999999999999999999999999999999999999
Q ss_pred ccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHH
Q 012096 378 IMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITN 457 (471)
Q Consensus 378 ~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 457 (471)
+++||+.||+++++.+|+|+.+.. .. ..+.++.++|.++|++++.+++++++.+|+||++++++.++++++||||.++
T Consensus 381 ~~~DQ~~na~~~~~~~gvg~~~~~-~~-~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~n 458 (470)
T PLN03015 381 LYAEQWMNATLLTEEIGVAVRTSE-LP-SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNS 458 (470)
T ss_pred cccchHHHHHHHHHHhCeeEEecc-cc-cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 999999999999778899999952 10 1135899999999999995211223899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 012096 458 FDAFLNDIS 466 (471)
Q Consensus 458 ~~~~~~~~~ 466 (471)
+++|++.++
T Consensus 459 l~~~~~~~~ 467 (470)
T PLN03015 459 LFEWAKRCY 467 (470)
T ss_pred HHHHHHhcc
Confidence 999999874
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-61 Score=484.46 Aligned_cols=437 Identities=27% Similarity=0.432 Sum_probs=331.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCC----cEEEEEECccchh----hhcCC----CCCCCCeEEEecCCCCCCc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPN----VFITFVVTEEWLS----FIGSG----HGNHNNIRFETIPNVIPSE 79 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rG----h~Vt~~~~~~~~~----~~~~~----~~~~~~~~~~~ip~~~~~~ 79 (471)
+.||+++|++++||++|++.||+.|+. +| +.|||++++.+.. .+... .....++++..+|++..+.
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~--~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLA--SSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHh--CCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 459999999999999999999999999 76 8999999875422 12111 0111159999999764221
Q ss_pred hhhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHH
Q 012096 80 LVRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLV 159 (471)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (471)
. ..+...++..+...+.+.++++++.+. .++++||+|.+..|+..+|+++|||.+.|+++..+.++.+.++....
T Consensus 81 ~--~e~~~~~~~~~~~~~~~~l~~~L~~l~---~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 81 D--AAGVEEFISRYIQLHAPHVRAAIAGLS---CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred c--cccHHHHHHHHHHhhhHHHHHHHHhcC---CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 1 112334555556677778888887763 24799999999999999999999999999999999888877664422
Q ss_pred hcCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcC-
Q 012096 160 QNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKF- 238 (471)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~- 238 (471)
.. .+..... ...+..+|+++.+...+++.+........+..+....+...+++++++|||++||+.+++..+...
T Consensus 156 ~~--~~~~~~~--~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 156 EE--VAVEFEE--MEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred cc--ccCcccc--cCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 11 1100000 001224788877788888876542222223344444455678899999999999999999987632
Q ss_pred -----CCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCC
Q 012096 239 -----PFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGV 313 (471)
Q Consensus 239 -----~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~ 313 (471)
.++++.|||++....... . +..++++.+||+.++++++|||||||+...+.+++.+++.+|+.+++
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~~~-~--------~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~ 302 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFTPP-A--------EQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGH 302 (480)
T ss_pred cccCCCCceEEeCCCccccccCC-C--------ccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCC
Confidence 257999999985321110 0 02356799999999989999999999999999999999999999999
Q ss_pred cEEEEEcCCCC---------ccccccCC--------C-ceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceec
Q 012096 314 RFFWVSRGDTS---------WFKDGCVD--------R-GIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLT 375 (471)
Q Consensus 314 ~vi~~~~~~~~---------~~~~~~~~--------n-v~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~ 375 (471)
+|||++..... .....+|+ . +.+.+|+||.+||+|+++++||||||+||++||+++|||||+
T Consensus 303 ~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~ 382 (480)
T PLN00164 303 RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAP 382 (480)
T ss_pred CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEe
Confidence 99999985311 11111232 2 444599999999999999999999999999999999999999
Q ss_pred ccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcH
Q 012096 376 FPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSI 455 (471)
Q Consensus 376 ~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 455 (471)
+|+++||+.||+++++.+|+|+.+.. +..+.+.++.++|.++|+++|.++..+.+.+|++|+++++++++++++||||.
T Consensus 383 ~P~~~DQ~~Na~~~~~~~gvG~~~~~-~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~ 461 (480)
T PLN00164 383 WPLYAEQHLNAFELVADMGVAVAMKV-DRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSY 461 (480)
T ss_pred CCccccchhHHHHHHHHhCeEEEecc-ccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999999998777899999864 21111347999999999999976321237899999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 012096 456 TNFDAFLNDISLAH 469 (471)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (471)
+++++||+++...+
T Consensus 462 ~~l~~~v~~~~~~~ 475 (480)
T PLN00164 462 AALQRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998754
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.9e-61 Score=479.92 Aligned_cols=444 Identities=28% Similarity=0.434 Sum_probs=328.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCC----CCCCeEEEecC-----CCCCCchh
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHG----NHNNIRFETIP-----NVIPSELV 81 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~----~~~~~~~~~ip-----~~~~~~~~ 81 (471)
++.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+..... ....+++..+| ++++++.+
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAE--RGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHh--CCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 4479999999999999999999999999 9999999999987655543211 01148899888 57765432
Q ss_pred hhh-----cHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhH
Q 012096 82 RAR-----DFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFE 156 (471)
Q Consensus 82 ~~~-----~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (471)
... .+...+......+...++++++... .++++||+|.+..|+..+|+++|||.+.|++++++....+.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~---~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~ 161 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAK---PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIR 161 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcC---CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHH
Confidence 222 2333333444456677888776542 36899999999999999999999999999999998776554332
Q ss_pred HHHhcCCCCCCcccCCccccccCCCCCc---CCcCCCCccccCCCchHHHHHHHHhh-ccccccEEEEcchHHhhHHHHH
Q 012096 157 LLVQNGHFPVELSERGEEVVDYIPGLAS---TKLADLPTIFYGSGRQTLQRALESVS-KVSKAQCLLLSSVYELEAKVND 232 (471)
Q Consensus 157 ~~~~~~~~p~~~~~~~~~~~~~ip~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~~~~~ 232 (471)
........+ . ...+..+|+++. +...+++.++.+. ...+.+...+. ....++++++|||++||+.+++
T Consensus 162 ~~~~~~~~~----~--~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~ 233 (491)
T PLN02534 162 LHNAHLSVS----S--DSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAE 233 (491)
T ss_pred HhcccccCC----C--CCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHH
Confidence 111111011 0 112234677653 5566677644311 11223332222 2345778999999999999999
Q ss_pred HHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCC
Q 012096 233 TLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSG 312 (471)
Q Consensus 233 ~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~ 312 (471)
..+..+.++++.|||++............... .....+++.+||+.+++++||||||||......+++.+++.+|+.++
T Consensus 234 ~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~-~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~ 312 (491)
T PLN02534 234 AYEKAIKKKVWCVGPVSLCNKRNLDKFERGNK-ASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASK 312 (491)
T ss_pred HHHhhcCCcEEEECcccccccccccccccCCc-cccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 98875667899999997532110000000000 00123468999999998999999999999999999999999999999
Q ss_pred CcEEEEEcCC-----------CCcccccc-CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccc
Q 012096 313 VRFFWVSRGD-----------TSWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMM 380 (471)
Q Consensus 313 ~~vi~~~~~~-----------~~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~ 380 (471)
++|||++..+ ++++.++. +.++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.
T Consensus 313 ~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~ 392 (491)
T PLN02534 313 KPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFA 392 (491)
T ss_pred CCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccc
Confidence 9999999842 13344342 45666779999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhhcceeeeecCC------CCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCC
Q 012096 381 DQVPNSKLIVEDWKIGWKVKKPE------IGS-ESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGS 453 (471)
Q Consensus 381 DQ~~na~~v~~~lG~G~~l~~~~------~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 453 (471)
||+.||+++++.||+|+.+..+. +.+ ...++.++|.++|++++.+.+++.+.+|+||+++++++++++.+|||
T Consensus 393 dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGS 472 (491)
T PLN02534 393 EQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGS 472 (491)
T ss_pred cHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999885310 000 01479999999999999621112389999999999999999999999
Q ss_pred cHHHHHHHHHHHHhh
Q 012096 454 SITNFDAFLNDISLA 468 (471)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (471)
|.+++++||+++..+
T Consensus 473 S~~nl~~fv~~i~~~ 487 (491)
T PLN02534 473 SHINLSILIQDVLKQ 487 (491)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.5e-61 Score=473.92 Aligned_cols=422 Identities=27% Similarity=0.409 Sum_probs=319.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCC--cEEEE--EECccchhhh----cCCCCCCCCeEEEecCCCCCCch--h
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPN--VFITF--VVTEEWLSFI----GSGHGNHNNIRFETIPNVIPSEL--V 81 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rG--h~Vt~--~~~~~~~~~~----~~~~~~~~~~~~~~ip~~~~~~~--~ 81 (471)
..||+++|++++||++|++.||+.|+. +| +.||+ .+++.+...+ .......+++++..+|++.+... .
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~--~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILS--KNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHh--CCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 458999999999999999999999999 88 55665 4444322221 11111112699999997653211 1
Q ss_pred hhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 82 RARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
...+....+..+...+...++++++++... .++++||+|.+.+|+..+|+++|||.+.|++++++.++.+.+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRN-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCC-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 112333344445556777788888876321 2469999999999999999999999999999999988887765432111
Q ss_pred CCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCC-C
Q 012096 162 GHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFP-F 240 (471)
Q Consensus 162 ~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~ 240 (471)
.+..... ......+|+++.+...+++.+........+..+........+++.+++|||++||+.+++..+..+. +
T Consensus 160 --~~~~~~~--~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~ 235 (451)
T PLN03004 160 --TPGKNLK--DIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFR 235 (451)
T ss_pred --ccccccc--cCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCC
Confidence 1100000 1122357888878888888766422323344455555566778899999999999999999877433 5
Q ss_pred CccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 012096 241 PVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSR 320 (471)
Q Consensus 241 ~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~ 320 (471)
+++.|||++....... . + ...+.++.+||+.+++++||||||||+..++.+++++++.+|+.++++|||+++
T Consensus 236 ~v~~vGPl~~~~~~~~-~------~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r 307 (451)
T PLN03004 236 NIYPIGPLIVNGRIED-R------N-DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVR 307 (451)
T ss_pred CEEEEeeeccCccccc-c------c-cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 8999999985321110 0 0 012356899999998899999999999999999999999999999999999998
Q ss_pred CCC--------------CccccccC-CCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccch
Q 012096 321 GDT--------------SWFKDGCV-DRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPN 385 (471)
Q Consensus 321 ~~~--------------~~~~~~~~-~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~n 385 (471)
.+. +++.++.. .|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.|
T Consensus 308 ~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~n 387 (451)
T PLN03004 308 NPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFN 387 (451)
T ss_pred CCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhh
Confidence 531 12222222 477788999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHH
Q 012096 386 SKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSIT 456 (471)
Q Consensus 386 a~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 456 (471)
|+++++.+|+|+.++. +. .+.++.++|.++|++++++ ++||+++++++++.++++++||||++
T Consensus 388 a~~~~~~~g~g~~l~~-~~--~~~~~~e~l~~av~~vm~~-----~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 388 RVMIVDEIKIAISMNE-SE--TGFVSSTEVEKRVQEIIGE-----CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHHhCceEEecC-Cc--CCccCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999877899999975 21 1357999999999999987 89999999999999999999999864
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-60 Score=471.34 Aligned_cols=413 Identities=21% Similarity=0.338 Sum_probs=310.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEec--C--CCCCCchhhhhcH-
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETI--P--NVIPSELVRARDF- 86 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i--p--~~~~~~~~~~~~~- 86 (471)
+.||+++|+++.||++|++.||+.|+. +||+|||++++.+...+.+.+..+.++++..+ | ++++++.+...++
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~--~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~ 81 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAE--KGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIP 81 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHh--CCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchh
Confidence 469999999999999999999999999 99999999999888777655433335555554 3 4555443322222
Q ss_pred ---HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCC
Q 012096 87 ---LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGH 163 (471)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (471)
..++......+.+.++++++++ ++|+||+| ++.|+..+|+++|||++.|++++++.+. +.++.. ..
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~~-----~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~~-- 150 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRAL-----RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--GK-- 150 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--cc--
Confidence 2233333445556666666654 58999999 5789999999999999999999988654 333210 00
Q ss_pred CCCCcccCCccccccCCCCCc----CCcCCCCccccCCCchHHHHHHHHh-hccccccEEEEcchHHhhHHHHHHHHhcC
Q 012096 164 FPVELSERGEEVVDYIPGLAS----TKLADLPTIFYGSGRQTLQRALESV-SKVSKAQCLLLSSVYELEAKVNDTLKAKF 238 (471)
Q Consensus 164 ~p~~~~~~~~~~~~~ip~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 238 (471)
. .. .+|+++. +...+++.+. .....+....... +...+++.+++|||++||+.++++.+..+
T Consensus 151 ~--------~~---~~pglp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~ 217 (442)
T PLN02208 151 L--------GV---PPPGYPSSKVLFRENDAHALA--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY 217 (442)
T ss_pred c--------CC---CCCCCCCcccccCHHHcCccc--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc
Confidence 0 00 1344432 2334444321 1122233333222 34567899999999999999999987756
Q ss_pred CCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEE
Q 012096 239 PFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWV 318 (471)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~ 318 (471)
.++++.|||++...... . +.++++.+||+.+++++||||||||+..++.+++.+++.+++..+.+++|+
T Consensus 218 ~~~v~~vGpl~~~~~~~--~---------~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv 286 (442)
T PLN02208 218 HKKVLLTGPMFPEPDTS--K---------PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIA 286 (442)
T ss_pred CCCEEEEeecccCcCCC--C---------CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 78999999998653211 1 456789999999988899999999999999999999888887777777777
Q ss_pred EcCCC----------Ccccccc-CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhh
Q 012096 319 SRGDT----------SWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSK 387 (471)
Q Consensus 319 ~~~~~----------~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 387 (471)
+..+. +++..+. ..|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+
T Consensus 287 ~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~ 366 (442)
T PLN02208 287 VKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTR 366 (442)
T ss_pred EeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHH
Confidence 76431 1121221 146777799999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 012096 388 LIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISL 467 (471)
Q Consensus 388 ~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (471)
++++.+|+|+.++. + +++.++.++|.++|+++++++.++++.+|++++++++++.+ +|||.+++++||++++.
T Consensus 367 ~~~~~~g~gv~~~~-~--~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~----~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 367 LMTEEFEVSVEVSR-E--KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS----PGLLTGYVDKFVEELQE 439 (442)
T ss_pred HHHHHhceeEEecc-c--cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH
Confidence 98876799999975 2 11358999999999999976432347899999999999853 78999999999999975
Q ss_pred h
Q 012096 468 A 468 (471)
Q Consensus 468 ~ 468 (471)
.
T Consensus 440 ~ 440 (442)
T PLN02208 440 Y 440 (442)
T ss_pred h
Confidence 3
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=7.1e-61 Score=481.26 Aligned_cols=438 Identities=24% Similarity=0.366 Sum_probs=314.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCC----CC----CeEEEecC---CCCCCc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGN----HN----NIRFETIP---NVIPSE 79 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~----~~----~~~~~~ip---~~~~~~ 79 (471)
+++||+++|+|+.||++|++.||+.|+. |||+|||++++.+...+++.+.. .+ .+.+..+| +++++.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~--rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSS--RGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHh--CCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 3579999999999999999999999999 99999999999887666543220 11 34555566 345542
Q ss_pred hhhh--------hcHHHHHHHHH---HhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHH
Q 012096 80 LVRA--------RDFLAFVESVS---TKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASL 148 (471)
Q Consensus 80 ~~~~--------~~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 148 (471)
.+.. .....++..+. ..+...++++++. .+||+||+|.++.|+..+|+++|||.+.|++++++.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~ 156 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET-----TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFS 156 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHH
Confidence 2211 11223333332 2333334444432 269999999999999999999999999999999887
Q ss_pred HHHHHhhHHHHhcCCCCCCcccCCccccccCCCCCc---CCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHH
Q 012096 149 FSVFHHFELLVQNGHFPVELSERGEEVVDYIPGLAS---TKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYE 225 (471)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ip~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 225 (471)
.+...++.........+. ......+|+++. +...+++.. . ....+........+...+.+.+++|++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~------~~~~~~~pg~p~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~ 228 (482)
T PLN03007 157 LCASYCIRVHKPQKKVAS------SSEPFVIPDLPGDIVITEEQINDA-D-EESPMGKFMKEVRESEVKSFGVLVNSFYE 228 (482)
T ss_pred HHHHHHHHhcccccccCC------CCceeeCCCCCCccccCHHhcCCC-C-CchhHHHHHHHHHhhcccCCEEEEECHHH
Confidence 665544321111111110 001112555531 222233321 1 11222333334444567888999999999
Q ss_pred hhHHHHHHHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHH
Q 012096 226 LEAKVNDTLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIV 305 (471)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~ 305 (471)
+|+...+.+++.....+++|||+..............+ ..+..++++.+||+.++++++|||||||+...+..++.+++
T Consensus 229 le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 229 LESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGK-KANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHHHHHHhccCCCEEEEccccccccccccccccCC-ccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 99998998877455679999998653221000000000 00012467899999998899999999999998899999999
Q ss_pred HHHHhCCCcEEEEEcCCC----------Cccccc-cCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCcee
Q 012096 306 AGVRNSGVRFFWVSRGDT----------SWFKDG-CVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPML 374 (471)
Q Consensus 306 ~al~~~~~~vi~~~~~~~----------~~~~~~-~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v 374 (471)
.+|+.++++|||+++.+. +++.++ .+.|+++.+|+||.+||+|+++++||||||+||++||+++|||||
T Consensus 308 ~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 999999999999998531 122212 245778889999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhhhhhcceeeeecCCC---CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcC
Q 012096 375 TFPIMMDQVPNSKLIVEDWKIGWKVKKPEI---GSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAEN 451 (471)
Q Consensus 375 ~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~---~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~ 451 (471)
++|+++||+.||+++++.+++|+.+.. .. .+...++.++|.++|++++.++++ ++||+||+++++++++++.+|
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~-~~~~~~~~~~~~~~~l~~av~~~m~~~~~--~~~r~~a~~~~~~a~~a~~~g 464 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGA-KKLVKVKGDFISREKVEKAVREVIVGEEA--EERRLRAKKLAEMAKAAVEEG 464 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEecc-ccccccccCcccHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999876677777642 10 011457999999999999987434 699999999999999999999
Q ss_pred CCcHHHHHHHHHHHHh
Q 012096 452 GSSITNFDAFLNDISL 467 (471)
Q Consensus 452 g~~~~~~~~~~~~~~~ 467 (471)
|||++++++||+.+.+
T Consensus 465 GsS~~~l~~~v~~~~~ 480 (482)
T PLN03007 465 GSSFNDLNKFMEELNS 480 (482)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 9999999999999875
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-60 Score=476.28 Aligned_cols=442 Identities=28% Similarity=0.467 Sum_probs=322.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCC---cEEEEEECccchh-----hhcCCCCCCCCeEEEecCCCCCC-chh
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPN---VFITFVVTEEWLS-----FIGSGHGNHNNIRFETIPNVIPS-ELV 81 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rG---h~Vt~~~~~~~~~-----~~~~~~~~~~~~~~~~ip~~~~~-~~~ 81 (471)
++.||+++|++++||++|++.||+.|+. +| +.||++++..... .+.......+++++..+|++..+ ..+
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~--~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~ 79 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLIN--LDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPME 79 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHh--CCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccc
Confidence 5679999999999999999999999999 88 4577777543211 12111111236999999965421 111
Q ss_pred h-hhcHHHHHHHHHHhchHHHHHHHHHhhhc----CC-CceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhh
Q 012096 82 R-ARDFLAFVESVSTKMEAPFEKVLDFLQVE----AP-VVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHF 155 (471)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----~~-~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 155 (471)
. .......+..+...+...+++.++++..+ +. ++++||+|.+.+|+..+|+++|||.+.|++++.+.++.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~ 159 (475)
T PLN02167 80 LFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYL 159 (475)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHH
Confidence 0 11122233334445555666666655311 11 359999999999999999999999999999999888877765
Q ss_pred HHHHhcCCCCCCcccCCccccccCCCC-CcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHH
Q 012096 156 ELLVQNGHFPVELSERGEEVVDYIPGL-ASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTL 234 (471)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~ip~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 234 (471)
+..... .+.............+|++ ..+...+++...... ...+.+....+...+++++++|||++||+.++++.
T Consensus 160 ~~~~~~--~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 160 PERHRK--TASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HHhccc--cccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 432211 1100000000122347887 456677777644321 12333444445567889999999999999999988
Q ss_pred Hhc--CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCC
Q 012096 235 KAK--FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSG 312 (471)
Q Consensus 235 ~~~--~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~ 312 (471)
+.. ..+++++|||+++......... . ....+++.+||+.++++++|||||||+...+..++.+++.+|+.++
T Consensus 236 ~~~~~~~p~v~~vGpl~~~~~~~~~~~-~-----~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~ 309 (475)
T PLN02167 236 SRLPENYPPVYPVGPILSLKDRTSPNL-D-----SSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVG 309 (475)
T ss_pred HhhcccCCeeEEeccccccccccCCCC-C-----cchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCC
Confidence 652 1268999999986432100000 0 0123579999999988899999999999899999999999999999
Q ss_pred CcEEEEEcCCC-----------CccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceeccccccc
Q 012096 313 VRFFWVSRGDT-----------SWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMD 381 (471)
Q Consensus 313 ~~vi~~~~~~~-----------~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~D 381 (471)
++|||+++.+. +++.++..+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++|
T Consensus 310 ~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~D 389 (475)
T PLN02167 310 CRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAE 389 (475)
T ss_pred CcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 99999997532 1222233344678999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhcceeeeecCCC--CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHH
Q 012096 382 QVPNSKLIVEDWKIGWKVKKPEI--GSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFD 459 (471)
Q Consensus 382 Q~~na~~v~~~lG~G~~l~~~~~--~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 459 (471)
|+.||+++.+.+|+|+.+.. .. .+...+++++|.++|+++|.++ +.||+||+++++++++++++||||.++++
T Consensus 390 Q~~na~~~~~~~g~g~~~~~-~~~~~~~~~~~~~~l~~av~~~m~~~----~~~r~~a~~~~~~~~~av~~gGsS~~~l~ 464 (475)
T PLN02167 390 QQLNAFTMVKELGLAVELRL-DYVSAYGEIVKADEIAGAVRSLMDGE----DVPRKKVKEIAEAARKAVMDGGSSFVAVK 464 (475)
T ss_pred chhhHHHHHHHhCeeEEeec-ccccccCCcccHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999886557799999864 10 0113479999999999999762 58999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 012096 460 AFLNDISLAH 469 (471)
Q Consensus 460 ~~~~~~~~~~ 469 (471)
+||+++...|
T Consensus 465 ~~v~~i~~~~ 474 (475)
T PLN02167 465 RFIDDLLGDH 474 (475)
T ss_pred HHHHHHHhcC
Confidence 9999998754
No 19
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.6e-60 Score=469.63 Aligned_cols=437 Identities=23% Similarity=0.345 Sum_probs=322.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCC-CCCCeEEEecC----CCCCCchhhhhc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHG-NHNNIRFETIP----NVIPSELVRARD 85 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~ip----~~~~~~~~~~~~ 85 (471)
.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+...+.+... ...++++..+| ++++++.+...+
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~--~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQ--KGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHh--CCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 3469999999999999999999999999 9999999999987766553211 12368999988 667654332222
Q ss_pred H----HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 86 F----LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 86 ~----~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
+ ..++......+.+.++++++++ ++++||+|.+..|+..+|+++|||.+.|++++.+.++.+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~ 157 (472)
T PLN02670 83 VPYTKQQLLKKAFDLLEPPLTTFLETS-----KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEG 157 (472)
T ss_pred cchhhHHHHHHHHHHhHHHHHHHHHhC-----CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhc
Confidence 2 2345555567777888888764 489999999999999999999999999999999888776544322222
Q ss_pred CCCCCCcccCCccccccCCCCC--cCCcCCCCccccCC--CchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhc
Q 012096 162 GHFPVELSERGEEVVDYIPGLA--STKLADLPTIFYGS--GRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAK 237 (471)
Q Consensus 162 ~~~p~~~~~~~~~~~~~ip~~~--~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 237 (471)
+..+.... .....+.++|+.. .+...+++.+.... ................+++++++|||++||+.+++..+..
T Consensus 158 ~~~~~~~~-~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~ 236 (472)
T PLN02670 158 GDLRSTAE-DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL 236 (472)
T ss_pred ccCCCccc-cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh
Confidence 22221100 0000111223222 13345666554311 1122333334444566789999999999999999998874
Q ss_pred CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEE
Q 012096 238 FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFW 317 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~ 317 (471)
+.++++.|||+.+........ . .......+++.+||+.+++++||||||||+..++.+++.+++.+|+.++++|||
T Consensus 237 ~~~~v~~VGPl~~~~~~~~~~---~-~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 237 YRKPIIPIGFLPPVIEDDEED---D-TIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred hCCCeEEEecCCccccccccc---c-ccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 456899999997531110000 0 000001256889999998889999999999999999999999999999999999
Q ss_pred EEcCCC-----------CccccccCCC-ceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccch
Q 012096 318 VSRGDT-----------SWFKDGCVDR-GIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPN 385 (471)
Q Consensus 318 ~~~~~~-----------~~~~~~~~~n-v~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~n 385 (471)
++.... +++..+..++ +.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.|
T Consensus 313 v~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 313 VLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 998521 1122222223 4446999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHH
Q 012096 386 SKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDI 465 (471)
Q Consensus 386 a~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (471)
|+++++ +|+|+.++..+ +.+.++.++|.++|+++|.++.| ++||+||+++++++++ .+...+.+++|++.|
T Consensus 393 a~~v~~-~g~Gv~l~~~~--~~~~~~~e~i~~av~~vm~~~~g--~~~r~~a~~l~~~~~~----~~~~~~~~~~~~~~l 463 (472)
T PLN02670 393 TRLLHG-KKLGLEVPRDE--RDGSFTSDSVAESVRLAMVDDAG--EEIRDKAKEMRNLFGD----MDRNNRYVDELVHYL 463 (472)
T ss_pred HHHHHH-cCeeEEeeccc--cCCcCcHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHhC----cchhHHHHHHHHHHH
Confidence 999985 59999997511 11358999999999999977433 6999999999999986 778889999999999
Q ss_pred Hhh
Q 012096 466 SLA 468 (471)
Q Consensus 466 ~~~ 468 (471)
++.
T Consensus 464 ~~~ 466 (472)
T PLN02670 464 REN 466 (472)
T ss_pred HHh
Confidence 874
No 20
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=5.7e-60 Score=463.39 Aligned_cols=414 Identities=19% Similarity=0.304 Sum_probs=313.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCC--CeEEEecC--CCCCCchhhhh---
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHN--NIRFETIP--NVIPSELVRAR--- 84 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~--~~~~~~ip--~~~~~~~~~~~--- 84 (471)
++||+++|++++||++|++.||+.|+. +|+.|||++++.+...+.+....+. .+.+..+| ++++++.+...
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~--~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAE--KGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHh--CCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 479999999999999999999999999 9999999999987665554211111 37788887 66665433211
Q ss_pred -cHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCC
Q 012096 85 -DFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGH 163 (471)
Q Consensus 85 -~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (471)
.....+......+.+.++++++.+ ++|+||+|. ..|+..+|+++|||.+.|++++++.++.+.+ . ...
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~ 151 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGE 151 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----ccc
Confidence 122334444445667788877764 489999995 8899999999999999999999987776542 1 111
Q ss_pred CCCCcccCCccccccCCCCC----cCCcCCCCcccc--C--CCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHH
Q 012096 164 FPVELSERGEEVVDYIPGLA----STKLADLPTIFY--G--SGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLK 235 (471)
Q Consensus 164 ~p~~~~~~~~~~~~~ip~~~----~~~~~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~ 235 (471)
++ . .+|+++ .+...+++.+.. . ..................++.+++|||+++|+.++++.+
T Consensus 152 ~~--------~---~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 152 LG--------V---PPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred CC--------C---CCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 10 0 124443 133444444321 0 011122222222245677889999999999999999987
Q ss_pred hcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcE
Q 012096 236 AKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRF 315 (471)
Q Consensus 236 ~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~v 315 (471)
....++++.|||+++..... . ..++++.+|||.+++++||||||||+...+.+++.++..+|+..+.+|
T Consensus 221 ~~~~~~v~~VGPL~~~~~~~--~---------~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pf 289 (453)
T PLN02764 221 KHCRKKVLLTGPVFPEPDKT--R---------ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPF 289 (453)
T ss_pred hhcCCcEEEeccCccCcccc--c---------cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCe
Confidence 73346799999997542110 0 234679999999999999999999999999999999999999999999
Q ss_pred EEEEcCC----------CCccccccCCCceE-eeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccc
Q 012096 316 FWVSRGD----------TSWFKDGCVDRGIV-VPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVP 384 (471)
Q Consensus 316 i~~~~~~----------~~~~~~~~~~nv~v-~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~ 384 (471)
+|+++.. ++++..+..++..+ .+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.
T Consensus 290 lwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 290 LVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred EEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 9999842 13344444344444 499999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHH
Q 012096 385 NSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLND 464 (471)
Q Consensus 385 na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (471)
||+++++.+|+|+.+.. + +.+.++.++|.++|+++++++.++++.+|++++++++++++ ||||.+++++||++
T Consensus 370 na~~l~~~~g~gv~~~~-~--~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~ 442 (453)
T PLN02764 370 NTRLLSDELKVSVEVAR-E--ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIES 442 (453)
T ss_pred HHHHHHHHhceEEEecc-c--cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Confidence 99999867799988754 1 01357999999999999976422347899999999999964 99999999999999
Q ss_pred HHh
Q 012096 465 ISL 467 (471)
Q Consensus 465 ~~~ 467 (471)
+..
T Consensus 443 ~~~ 445 (453)
T PLN02764 443 LQD 445 (453)
T ss_pred HHH
Confidence 876
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.3e-59 Score=464.10 Aligned_cols=413 Identities=20% Similarity=0.311 Sum_probs=308.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC----CCCCCchhhhhcH-
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP----NVIPSELVRARDF- 86 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip----~~~~~~~~~~~~~- 86 (471)
+.||+++|+++.||++|++.||+.|+. +|++|||++++.+...+........++++..++ ++++++.+...++
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las--~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~ 81 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAE--KGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLP 81 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHh--CCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccch
Confidence 469999999999999999999999999 999999999998877665543323357775553 5666543322222
Q ss_pred ---HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCC
Q 012096 87 ---LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGH 163 (471)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 163 (471)
...+......+...++++++. .+||+||+|. ..|+..+|+++|||++.|++++.+.++.+.+.. ....
T Consensus 82 ~~~~~~~~~a~~~l~~~l~~~L~~-----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~---~~~~ 152 (446)
T PLN00414 82 NSTKKPIFDAMDLLRDQIEAKVRA-----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR---AELG 152 (446)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc-----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH---hhcC
Confidence 222333334455555555543 2589999995 889999999999999999999998887665411 1000
Q ss_pred CCCCcccCCccccccCCCCCc----CCcCC--CCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhc
Q 012096 164 FPVELSERGEEVVDYIPGLAS----TKLAD--LPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAK 237 (471)
Q Consensus 164 ~p~~~~~~~~~~~~~ip~~~~----~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 237 (471)
. + +|+++. +...+ ++.++.. ....+....+...+++++++|||++||+.++++.+..
T Consensus 153 ~----------~---~pg~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 215 (446)
T PLN00414 153 F----------P---PPDYPLSKVALRGHDANVCSLFAN----SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ 215 (446)
T ss_pred C----------C---CCCCCCCcCcCchhhcccchhhcc----cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh
Confidence 0 0 133321 11111 1222211 1122333334566789999999999999999998874
Q ss_pred CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEE
Q 012096 238 FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFW 317 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~ 317 (471)
+.++++.|||+.+........ ...+++.+|||.+++++||||||||....+.+++.++..+|+..+.+|+|
T Consensus 216 ~~~~v~~VGPl~~~~~~~~~~---------~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flw 286 (446)
T PLN00414 216 CQRKVLLTGPMLPEPQNKSGK---------PLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLI 286 (446)
T ss_pred cCCCeEEEcccCCCcccccCc---------ccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 456799999997543110000 12356889999999999999999999999999999999999999999999
Q ss_pred EEcCC----------CCccccccCCCceEe-eccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchh
Q 012096 318 VSRGD----------TSWFKDGCVDRGIVV-PWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNS 386 (471)
Q Consensus 318 ~~~~~----------~~~~~~~~~~nv~v~-~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na 386 (471)
++... ++++..+..++.+++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||
T Consensus 287 vvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 287 AVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred EEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 99752 134545555566665 9999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 387 KLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 387 ~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
+++++.+|+|+.+.. + +.+.+++++|.++++++|.++.++++.||++++++++.+. ++||+|.. +++||++++
T Consensus 367 ~~~~~~~g~g~~~~~-~--~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~ss~-l~~~v~~~~ 439 (446)
T PLN00414 367 RLLTEELEVSVKVQR-E--DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLSGY-ADKFVEALE 439 (446)
T ss_pred HHHHHHhCeEEEecc-c--cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcHHH-HHHHHHHHH
Confidence 999867799999975 2 1135899999999999997643334789999999999975 45774433 899999996
Q ss_pred hh
Q 012096 467 LA 468 (471)
Q Consensus 467 ~~ 468 (471)
..
T Consensus 440 ~~ 441 (446)
T PLN00414 440 NE 441 (446)
T ss_pred Hh
Confidence 54
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.9e-51 Score=409.07 Aligned_cols=398 Identities=16% Similarity=0.177 Sum_probs=281.7
Q ss_pred cEEEEE-cCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCch---hhh-----
Q 012096 13 CHIVAL-PYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSEL---VRA----- 83 (471)
Q Consensus 13 ~~il~~-~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~---~~~----- 83 (471)
.||+++ |.++.||+.-+.+++++|++ |||+||++++...... ... ...+++...++...+... ...
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~--rGH~VTvi~p~~~~~~-~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAE--RGHNVTVIKPTLRVYY-ASH--LCGNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHH--cCCeEEEEeccccccc-ccC--CCCCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 467755 88999999999999999999 9999999987542111 100 112666666542111100 000
Q ss_pred -h---cH----HHHHHHHHHhchHHHHH--HHHHhhhcCCCceEEEEcCchhhHHHHHhhc-CCCeEEEecchHHHHHHH
Q 012096 84 -R---DF----LAFVESVSTKMEAPFEK--VLDFLQVEAPVVSAIIVDTFLAWAVDVGNRR-NIPVASFWSMSASLFSVF 152 (471)
Q Consensus 84 -~---~~----~~~~~~~~~~~~~~~~~--ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~~~~~ 152 (471)
. +. ..........|+..+.+ +.+.++....+||+||+|.+..|++.+|+++ ++|.|.+++........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~- 174 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF- 174 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH-
Confidence 0 00 11112223344444322 3333331113799999998889999999999 99998887755442211
Q ss_pred HhhHHHHhcCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchH--------HHH-------HHH-Hh-------
Q 012096 153 HHFELLVQNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQT--------LQR-------ALE-SV------- 209 (471)
Q Consensus 153 ~~~~~~~~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~--------~~~-------~~~-~~------- 209 (471)
...+ +. +.+++|+|.+. ..+.+-+++++|..... ... ..+ .+
T Consensus 175 ~~~g------g~--------p~~~syvP~~~-~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~ 239 (507)
T PHA03392 175 ETMG------AV--------SRHPVYYPNLW-RSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTI 239 (507)
T ss_pred Hhhc------cC--------CCCCeeeCCcc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCH
Confidence 1111 11 45667777754 34556666666432211 000 111 10
Q ss_pred -hccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEE
Q 012096 210 -SKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYV 288 (471)
Q Consensus 210 -~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~v 288 (471)
+...+.+.+++|+.+.++++ |+ +++++++|||+..+.... . ++++++.+|++..+ +++|||
T Consensus 240 ~~l~~~~~l~lvns~~~~d~~-----rp-~~p~v~~vGgi~~~~~~~--~---------~l~~~l~~fl~~~~-~g~V~v 301 (507)
T PHA03392 240 RELRNRVQLLFVNVHPVFDNN-----RP-VPPSVQYLGGLHLHKKPP--Q---------PLDDYLEEFLNNST-NGVVYV 301 (507)
T ss_pred HHHHhCCcEEEEecCccccCC-----CC-CCCCeeeecccccCCCCC--C---------CCCHHHHHHHhcCC-CcEEEE
Confidence 11234568889998888764 76 999999999998753211 1 67889999998874 469999
Q ss_pred EeCCCcC---CCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHH
Q 012096 289 SLGSLWS---VSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLE 365 (471)
Q Consensus 289 s~GS~~~---~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~e 365 (471)
||||+.. .+.+.++.+++|+++++++|||+++++... ...|+|+++.+|+||.+||+|+.+++||||||+||++|
T Consensus 302 S~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~--~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~E 379 (507)
T PHA03392 302 SFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA--INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDE 379 (507)
T ss_pred ECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc--ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHH
Confidence 9999864 567889999999999999999999864321 24688999999999999999999999999999999999
Q ss_pred HHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 012096 366 AAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQ 445 (471)
Q Consensus 366 al~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~ 445 (471)
|+++|||||++|+++||+.||+|+++. |+|+.+++ ..++.++|.++|+++++| ++||+||+++++.++
T Consensus 380 al~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~------~~~t~~~l~~ai~~vl~~-----~~y~~~a~~ls~~~~ 447 (507)
T PHA03392 380 AIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDT------VTVSAAQLVLAIVDVIEN-----PKYRKNLKELRHLIR 447 (507)
T ss_pred HHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEecc------CCcCHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHH
Confidence 999999999999999999999999976 99999998 558999999999999998 999999999999999
Q ss_pred HhHhcCCCcHHHHHHHHHHHH
Q 012096 446 EAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 446 ~~~~~~g~~~~~~~~~~~~~~ 466 (471)
+. .-+..+.+-.-++.+-
T Consensus 448 ~~---p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 448 HQ---PMTPLHKAIWYTEHVI 465 (507)
T ss_pred hC---CCCHHHHHHHHHHHHH
Confidence 74 3333344434444443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.4e-52 Score=429.20 Aligned_cols=376 Identities=23% Similarity=0.340 Sum_probs=235.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhh--h--------
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVR--A-------- 83 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~--~-------- 83 (471)
||+++|. +.||+.++..|+++|++ |||+||++++..... +.... ...+++..++......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~--rGH~VTvl~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAE--RGHNVTVLTPSPSSS-LNPSK--PSNIRFETYPDPYPEEEFEEIFPEFISKFF 75 (500)
T ss_dssp -----------SHHHHHHHHHHHHH--H-TTSEEEHHHHHHT---------S-CCEEEE-----TT------TTHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHh--cCCceEEEEeecccc-ccccc--ccceeeEEEcCCcchHHHhhhhHHHHHHHh
Confidence 6888885 77999999999999999 999999999865322 22111 1256666666444321100 0
Q ss_pred ------hcHHHHHHH-------HHHhchHHH--HHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHH
Q 012096 84 ------RDFLAFVES-------VSTKMEAPF--EKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASL 148 (471)
Q Consensus 84 ------~~~~~~~~~-------~~~~~~~~~--~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 148 (471)
......+.. ....|+..+ .++++.++.+ ++|++|+|.+..|+..+|+.++||.+.+.+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~--~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 76 SESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE--KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH--HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--ccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 001111111 112232211 1133333332 69999999998999999999999998854432210
Q ss_pred HHHHHhhHHHHhcCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHH----Hhhcc------------
Q 012096 149 FSVFHHFELLVQNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALE----SVSKV------------ 212 (471)
Q Consensus 149 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~------------ 212 (471)
. ........+.+++|+|... ..+.+.+.+++|........... .....
T Consensus 154 ~---------------~~~~~~g~p~~psyvP~~~-s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 154 D---------------LSSFSGGVPSPPSYVPSMF-SDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp C---------------CTCCTSCCCTSTTSTTCBC-CCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred h---------------hhhhccCCCCChHHhcccc-ccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 0 0000001145666777653 24456666666544433322211 11110
Q ss_pred -------ccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeE
Q 012096 213 -------SKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSV 285 (471)
Q Consensus 213 -------~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 285 (471)
.+...+++|+.+. +++|++ ++|++++||+++..+.. ++++++.+|++...++++
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~-----ld~prp-~~p~v~~vGgl~~~~~~-------------~l~~~~~~~~~~~~~~~v 278 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPS-----LDFPRP-LLPNVVEVGGLHIKPAK-------------PLPEELWNFLDSSGKKGV 278 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE---------HH-HHCTSTTGCGC-S-----------------TCHHHHHHHTSTTTTTEE
T ss_pred cccHHHHHHHHHHhhhcccc-----CcCCcc-hhhcccccCcccccccc-------------ccccccchhhhccCCCCE
Confidence 1112223344433 455687 77899999999876543 678889999998556789
Q ss_pred EEEEeCCCcCC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHH
Q 012096 286 LYVSLGSLWSV-SSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTL 364 (471)
Q Consensus 286 I~vs~GS~~~~-~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~ 364 (471)
|||||||+... +.+.++.+++++++++++|||++.+.. ...+|+|+++++|+||.+||+|+++++||||||+||+.
T Consensus 279 v~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~---~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~ 355 (500)
T PF00201_consen 279 VYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEP---PENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQ 355 (500)
T ss_dssp EEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSH---GCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHH
T ss_pred EEEecCcccchhHHHHHHHHHHHHhhCCCcccccccccc---cccccceEEEeccccchhhhhcccceeeeeccccchhh
Confidence 99999999864 445588899999999999999998732 23457899999999999999999999999999999999
Q ss_pred HHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 012096 365 EAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 365 eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~ 444 (471)
||+++|||||++|+++||+.||+++++. |+|+.++. ..+|.++|.++|+++|+| ++|++||++++..+
T Consensus 356 Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~------~~~~~~~l~~ai~~vl~~-----~~y~~~a~~ls~~~ 423 (500)
T PF00201_consen 356 EALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDK------NDLTEEELRAAIREVLEN-----PSYKENAKRLSSLF 423 (500)
T ss_dssp HHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGG------GC-SHHHHHHHHHHHHHS-----HHHHHHHHHHHHTT
T ss_pred hhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEe------cCCcHHHHHHHHHHHHhh-----hHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 99999998 558999999999999999 99999999999999
Q ss_pred HHh
Q 012096 445 QEA 447 (471)
Q Consensus 445 ~~~ 447 (471)
++.
T Consensus 424 ~~~ 426 (500)
T PF00201_consen 424 RDR 426 (500)
T ss_dssp T--
T ss_pred hcC
Confidence 975
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.8e-42 Score=343.62 Aligned_cols=374 Identities=21% Similarity=0.233 Sum_probs=257.0
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCc-hhhh---hcHHHHHHHH
Q 012096 18 LPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSE-LVRA---RDFLAFVESV 93 (471)
Q Consensus 18 ~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~-~~~~---~~~~~~~~~~ 93 (471)
+.+|+.||++|++.||++|++ +||+|+|++++.+.+.++.. |+.+..++...... .... .++......+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~--~Gh~V~~~~~~~~~~~v~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVA--RGHRVTYATTEEFAERVEAA-----GAEFVLYGSALPPPDNPPENTEEEPIDIIEKL 73 (392)
T ss_pred CCCCccccccccHHHHHHHHh--CCCeEEEEeCHHHHHHHHHc-----CCEEEecCCcCccccccccccCcchHHHHHHH
Confidence 357899999999999999999 99999999999999999988 78888888544321 1000 2334444444
Q ss_pred HHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccCCc
Q 012096 94 STKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERGE 173 (471)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (471)
...+...+.++.+.++. .+||+||+|.++.++..+|+++|||+|.+++.+.... .+... ..|
T Consensus 74 ~~~~~~~~~~l~~~~~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~----~~~~~----~~~-------- 135 (392)
T TIGR01426 74 LDEAEDVLPQLEEAYKG--DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANE----EFEEM----VSP-------- 135 (392)
T ss_pred HHHHHHHHHHHHHHhcC--CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhcccc----ccccc----ccc--------
Confidence 44444555555554443 3799999999888899999999999999865432210 00000 000
Q ss_pred cccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhh-------c--cccccEEEEcchHHhhHHHHHHHHhcCCCCccc
Q 012096 174 EVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVS-------K--VSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYP 244 (471)
Q Consensus 174 ~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~ 244 (471)
..+.+... ......... .....++....... . .......+....+.+++ +..++++++++
T Consensus 136 ----~~~~~~~~-~~~~~~~~~-~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~ 204 (392)
T TIGR01426 136 ----AGEGSAEE-GAIAERGLA-EYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-----AGETFDDSFTF 204 (392)
T ss_pred ----cchhhhhh-hccccchhH-HHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC-----CccccCCCeEE
Confidence 00000000 000000000 00000111111110 0 01112234444344443 24458889999
Q ss_pred cccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 012096 245 IGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTS 324 (471)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~ 324 (471)
+||+..... +...|....+++++||||+||+.......+..+++++.+.++++||..+....
T Consensus 205 ~Gp~~~~~~------------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~ 266 (392)
T TIGR01426 205 VGPCIGDRK------------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD 266 (392)
T ss_pred ECCCCCCcc------------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 999875421 12236655566789999999987666668888999999999999998876432
Q ss_pred -ccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCC
Q 012096 325 -WFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE 403 (471)
Q Consensus 325 -~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 403 (471)
......++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||+.||+++++. |+|+.+..
T Consensus 267 ~~~~~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~-g~g~~l~~-- 341 (392)
T TIGR01426 267 PADLGELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAEL-GLGRHLPP-- 341 (392)
T ss_pred hhHhccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHC-CCEEEecc--
Confidence 112235789999999999999999998 999999999999999999999999999999999999966 99999887
Q ss_pred CCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHH
Q 012096 404 IGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLN 463 (471)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (471)
..+++++|.++|.++++| ++|+++++++++.++.. ++..+.++.+.+
T Consensus 342 ----~~~~~~~l~~ai~~~l~~-----~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~ 388 (392)
T TIGR01426 342 ----EEVTAEKLREAVLAVLSD-----PRYAERLRKMRAEIREA----GGARRAADEIEG 388 (392)
T ss_pred ----ccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 447999999999999998 89999999999999863 344444444443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.3e-43 Score=348.42 Aligned_cols=364 Identities=15% Similarity=0.110 Sum_probs=247.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhh----------
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVR---------- 82 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~---------- 82 (471)
|||+|+++|+.||++|+++||++|++ |||+|+|++++.+...++.. |+.|..+++........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~--rGh~V~~~t~~~~~~~v~~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRA--AGHEVRVATPPEFADLVEAA-----GLEFVPVGGDPDELLASPERNAGLLLL 73 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHH--CCCeEEEeeCHhHHHHHHHc-----CCceeeCCCCHHHHHhhhhhccccccc
Confidence 69999999999999999999999999 99999999999999999877 78898887543221110
Q ss_pred -hhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 83 -ARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
..........+...+...++++++.++. .+||+||+|.+..++..+|+++|||+|.+++++......
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~---------- 141 (401)
T cd03784 74 GPGLLLGALRLLRREAEAMLDDLVAAARD--WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA---------- 141 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc----------
Confidence 1112233333444555566666665543 479999999988888999999999999998766432110
Q ss_pred CCCCCCcccCCccccccCCCCCcCCcCCCCcccc-----CCCchHHHHHHHHhhccc------cccEEEEcchHHhhHHH
Q 012096 162 GHFPVELSERGEEVVDYIPGLASTKLADLPTIFY-----GSGRQTLQRALESVSKVS------KAQCLLLSSVYELEAKV 230 (471)
Q Consensus 162 ~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~l~~~~ 230 (471)
.++.. .... ........ .......+.......... .....+....+.+.
T Consensus 142 ------------~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~--- 201 (401)
T cd03784 142 ------------FPPPL-GRAN----LRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVL--- 201 (401)
T ss_pred ------------CCCcc-chHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccC---
Confidence 00000 0000 00000000 000000111111110000 01111111111111
Q ss_pred HHHHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCH-HHHHHHHHHHH
Q 012096 231 NDTLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSS-VQMDEIVAGVR 309 (471)
Q Consensus 231 ~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~-~~~~~~~~al~ 309 (471)
.++++++++..++|......+... ..++++..|++.. +++|||++||+..... ..+..+++++.
T Consensus 202 --~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~ 266 (401)
T cd03784 202 --PPPPDWPRFDLVTGYGFRDVPYNG-----------PPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVA 266 (401)
T ss_pred --CCCCCccccCcEeCCCCCCCCCCC-----------CCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHH
Confidence 123336667777763333222110 3456677788653 5699999999987554 56677999999
Q ss_pred hCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhh
Q 012096 310 NSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLI 389 (471)
Q Consensus 310 ~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 389 (471)
..+.++||..+...... ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||+++
T Consensus 267 ~~~~~~i~~~g~~~~~~-~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~ 343 (401)
T cd03784 267 TLGQRAILSLGWGGLGA-EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV 343 (401)
T ss_pred HcCCeEEEEccCccccc-cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH
Confidence 99999999998754221 345789999999999999999998 999999999999999999999999999999999999
Q ss_pred hhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 012096 390 VEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQE 446 (471)
Q Consensus 390 ~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~ 446 (471)
++. |+|+.++. ..+++++|.++|++++++ .+++++.++++.+++
T Consensus 344 ~~~-G~g~~l~~------~~~~~~~l~~al~~~l~~------~~~~~~~~~~~~~~~ 387 (401)
T cd03784 344 AEL-GAGPALDP------RELTAERLAAALRRLLDP------PSRRRAAALLRRIRE 387 (401)
T ss_pred HHC-CCCCCCCc------ccCCHHHHHHHHHHHhCH------HHHHHHHHHHHHHHh
Confidence 966 99999987 347999999999999985 455667777777654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-42 Score=338.08 Aligned_cols=394 Identities=19% Similarity=0.212 Sum_probs=252.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCC-Cchh-hhhcHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIP-SELV-RARDFLAF 89 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~-~~~~-~~~~~~~~ 89 (471)
+|||+|+..|+.||++|+++||++|.+ +||+|+|+|++.+.+.++++ ++.|..++.... .... ...+....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~--~gheV~~~~~~~~~~~ve~a-----g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRR--RGHEVVFASTGKFKEFVEAA-----GLAFVAYPIRDSELATEDGKFAGVKS 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHh--cCCeEEEEeCHHHHHHHHHh-----CcceeeccccCChhhhhhhhhhccch
Confidence 579999999999999999999999999 99999999999999999999 656666664311 1111 11111111
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcc
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELS 169 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (471)
+..........+.++++-+.+. .+|+++.|...+.+ .++...++|++............ ...|....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~e~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 140 (406)
T COG1819 74 FRRLLQQFKKLIRELLELLREL--EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPA----------AGLPLPPV 140 (406)
T ss_pred hHHHhhhhhhhhHHHHHHHHhc--chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcc----------cccCcccc
Confidence 1112222233344444444332 59999999776555 78999999998864443331111 01111100
Q ss_pred cCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHH--hhccccccEEEEcchHHhhHHHHHHH-H--hcCCCCccc
Q 012096 170 ERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALES--VSKVSKAQCLLLSSVYELEAKVNDTL-K--AKFPFPVYP 244 (471)
Q Consensus 170 ~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~l~~~~~~~~-~--~~~~~~~~~ 244 (471)
..... ..++.. .+.............+......... +......-..+..+-+.++....+.. . ..++....+
T Consensus 141 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 141 GIAGK--LPIPLY-PLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred ccccc--cccccc-ccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCc
Confidence 00000 000000 0000000000000000000000000 00000000000011111111111100 0 113444556
Q ss_pred cccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC
Q 012096 245 IGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTS 324 (471)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~ 324 (471)
+||+.... ..+...|.. .++++||+|+||+... .+.++.+++++..++.+||...++ ..
T Consensus 218 ~~~~~~~~-----------------~~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~ 276 (406)
T COG1819 218 IGPLLGEA-----------------ANELPYWIP--ADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR 276 (406)
T ss_pred cccccccc-----------------cccCcchhc--CCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc
Confidence 66666543 222333322 2456999999999987 888999999999999999999977 32
Q ss_pred ccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCC
Q 012096 325 WFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEI 404 (471)
Q Consensus 325 ~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 404 (471)
......|.|+.+.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.||.|+++. |+|+.+..
T Consensus 277 ~~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~-G~G~~l~~--- 350 (406)
T COG1819 277 DTLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEEL-GAGIALPF--- 350 (406)
T ss_pred cccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHc-CCceecCc---
Confidence 234567899999999999999999999 999999999999999999999999999999999999966 99999998
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 405 GSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
..++++.|+++|+++|+| ++|+++++++++.+++. +| .+.+.+++++..+.
T Consensus 351 ---~~l~~~~l~~av~~vL~~-----~~~~~~~~~~~~~~~~~---~g--~~~~a~~le~~~~~ 401 (406)
T COG1819 351 ---EELTEERLRAAVNEVLAD-----DSYRRAAERLAEEFKEE---DG--PAKAADLLEEFARE 401 (406)
T ss_pred ---ccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhhhc---cc--HHHHHHHHHHHHhc
Confidence 458999999999999999 99999999999999986 44 66677777776553
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.4e-40 Score=337.83 Aligned_cols=386 Identities=26% Similarity=0.371 Sum_probs=249.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCC--------eEEEecCCCCCCchhhh
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNN--------IRFETIPNVIPSELVRA 83 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~--------~~~~~ip~~~~~~~~~~ 83 (471)
..+++++++|+.||++|++.+|++|++ +||+||++++.......... ..... +.+...+++++......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~--~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAE--RGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHH--cCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHH
Confidence 357888888899999999999999999 99999999998766554331 11001 11111112222211111
Q ss_pred -hcHHHHHHHHHHhchHHHHHHHHHhhhcC-CCceEEEEcCchhhHHHHHhhcC-CCeEEEecchHHHHHHHHhhHHHHh
Q 012096 84 -RDFLAFVESVSTKMEAPFEKVLDFLQVEA-PVVSAIIVDTFLAWAVDVGNRRN-IPVASFWSMSASLFSVFHHFELLVQ 160 (471)
Q Consensus 84 -~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~D~vI~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~~~~ 160 (471)
.........+...|...+++....+.... .++|++|+|.+..+...++.... ||...+++..........+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~------ 155 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP------ 155 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc------
Confidence 01122234444556656666443332221 23999999998777777777765 8888887777665432221
Q ss_pred cCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchH---H-------------HHHHH-Hh-----------hcc
Q 012096 161 NGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQT---L-------------QRALE-SV-----------SKV 212 (471)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~---~-------------~~~~~-~~-----------~~~ 212 (471)
.+..++|........+.+.+..+..... . ..... .. ...
T Consensus 156 -------------~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 222 (496)
T KOG1192|consen 156 -------------SPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGII 222 (496)
T ss_pred -------------CcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhh
Confidence 1112333321111112222222111000 0 00000 00 111
Q ss_pred ccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCC
Q 012096 213 SKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGS 292 (471)
Q Consensus 213 ~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS 292 (471)
.+....++++.+.++.. +++ ..+++++|||+........ . +...+|.++++.. ..++|||||||
T Consensus 223 ~~~~~~~ln~~~~~~~~----~~~-~~~~v~~IG~l~~~~~~~~-~---------~~~~~wl~~~~~~-~~~vvyvSfGS 286 (496)
T KOG1192|consen 223 VNASFIFLNSNPLLDFE----PRP-LLPKVIPIGPLHVKDSKQK-S---------PLPLEWLDILDES-RHSVVYISFGS 286 (496)
T ss_pred hcCeEEEEccCcccCCC----CCC-CCCCceEECcEEecCcccc-c---------cccHHHHHHHhhc-cCCeEEEECCc
Confidence 22233444443333321 122 5689999999998733210 0 1233444444432 22699999999
Q ss_pred Cc---CCCHHHHHHHHHHHHhC-CCcEEEEEcCCC-----CccccccCCCceEeeccchHHh-hhhcccceeeccCCcch
Q 012096 293 LW---SVSSVQMDEIVAGVRNS-GVRFFWVSRGDT-----SWFKDGCVDRGIVVPWCDQLEV-LCHSSIGGFWTHCGLNS 362 (471)
Q Consensus 293 ~~---~~~~~~~~~~~~al~~~-~~~vi~~~~~~~-----~~~~~~~~~nv~v~~~~pq~~l-L~~~~~~~~IthgG~~s 362 (471)
+. .++.++..+++.+++++ +++|||++..+. +++.++.++|+...+|+||.++ |+|+++++||||||+||
T Consensus 287 ~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 287 MVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 99 68999999999999999 788999998753 2232222458999999999998 59999999999999999
Q ss_pred HHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 012096 363 TLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQE 442 (471)
Q Consensus 363 ~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~ 442 (471)
|+|++++|||||++|+++||+.||++++++ |.|.++.. ..++.+.+.+++.+++++ ++|+++++++++
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~-g~~~v~~~------~~~~~~~~~~~~~~il~~-----~~y~~~~~~l~~ 434 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLVRH-GGGGVLDK------RDLVSEELLEAIKEILEN-----EEYKEAAKRLSE 434 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHHhC-CCEEEEeh------hhcCcHHHHHHHHHHHcC-----hHHHHHHHHHHH
Confidence 999999999999999999999999999988 66666665 224555599999999998 899999999999
Q ss_pred HHHHh
Q 012096 443 ICQEA 447 (471)
Q Consensus 443 ~~~~~ 447 (471)
.+++.
T Consensus 435 ~~~~~ 439 (496)
T KOG1192|consen 435 ILRDQ 439 (496)
T ss_pred HHHcC
Confidence 98853
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=2.1e-28 Score=237.11 Aligned_cols=319 Identities=17% Similarity=0.151 Sum_probs=206.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh--hhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS--FIGSGHGNHNNIRFETIPNVIPSELVRARDFLAF 89 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 89 (471)
|.||+|.++++.||+.|.+++|++|++ +||+|+|++.....+ .+.+. ++.+..++....... .. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~--~g~~v~~vg~~~~~e~~l~~~~-----g~~~~~~~~~~l~~~---~~-~~~ 69 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKE--DNWDISYIGSHQGIEKTIIEKE-----NIPYYSISSGKLRRY---FD-LKN 69 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHh--CCCEEEEEECCCccccccCccc-----CCcEEEEeccCcCCC---ch-HHH
Confidence 568999999999999999999999999 999999999765443 22223 677777763211111 01 112
Q ss_pred HHHHHHhchHHH--HHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCC
Q 012096 90 VESVSTKMEAPF--EKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFP 165 (471)
Q Consensus 90 ~~~~~~~~~~~~--~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 165 (471)
+..........+ ..++++. +||+||+...+ ..+..+|+.+++|+++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~-----kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~------------------------ 120 (352)
T PRK12446 70 IKDPFLVMKGVMDAYVRIRKL-----KPDVIFSKGGFVSVPVVIGGWLNRVPVLLH------------------------ 120 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCCEEEecCchhhHHHHHHHHHcCCCEEEE------------------------
Confidence 222222221112 2245554 69999998766 45778999999999984
Q ss_pred CCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCC-CCccc
Q 012096 166 VELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFP-FPVYP 244 (471)
Q Consensus 166 ~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~ 244 (471)
+.+.++++. ++ .+. +..+ .++.+|++.. ..++ .++.+
T Consensus 121 ---------e~n~~~g~~--------------nr-~~~---------~~a~-~v~~~f~~~~--------~~~~~~k~~~ 158 (352)
T PRK12446 121 ---------ESDMTPGLA--------------NK-IAL---------RFAS-KIFVTFEEAA--------KHLPKEKVIY 158 (352)
T ss_pred ---------CCCCCccHH--------------HH-HHH---------HhhC-EEEEEccchh--------hhCCCCCeEE
Confidence 222333332 11 111 1111 1233443321 1133 46789
Q ss_pred cccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHH-HHHHHHHHHhCCCcEEEEEcCCC
Q 012096 245 IGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQ-MDEIVAGVRNSGVRFFWVSRGDT 323 (471)
Q Consensus 245 vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~-~~~~~~al~~~~~~vi~~~~~~~ 323 (471)
+|+.+.+.-.. ...+...+.+.-.+++++|+|..||......+. +..++..+. .+.+++|.+|.+.
T Consensus 159 tG~Pvr~~~~~------------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~ 225 (352)
T PRK12446 159 TGSPVREEVLK------------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN 225 (352)
T ss_pred ECCcCCccccc------------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch
Confidence 99988764321 111122222333345679999999999765544 333444443 2489999988653
Q ss_pred -CccccccCCCceEeecc-c-hHHhhhhcccceeeccCCcchHHHHHHcCCceeccccc-----ccccchhhhhhhhhcc
Q 012096 324 -SWFKDGCVDRGIVVPWC-D-QLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIM-----MDQVPNSKLIVEDWKI 395 (471)
Q Consensus 324 -~~~~~~~~~nv~v~~~~-p-q~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~lG~ 395 (471)
+...... .++.+.+|+ + ..++|.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+++. |+
T Consensus 226 ~~~~~~~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~ 301 (352)
T PRK12446 226 LDDSLQNK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GY 301 (352)
T ss_pred HHHHHhhc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CC
Confidence 1111111 355667887 4 4568999998 99999999999999999999999984 4899999999977 99
Q ss_pred eeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 012096 396 GWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRARE 439 (471)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~ 439 (471)
|..+.. ..++++.|.++|.++++|+ +.|++++++
T Consensus 302 ~~~l~~------~~~~~~~l~~~l~~ll~~~----~~~~~~~~~ 335 (352)
T PRK12446 302 ASVLYE------EDVTVNSLIKHVEELSHNN----EKYKTALKK 335 (352)
T ss_pred EEEcch------hcCCHHHHHHHHHHHHcCH----HHHHHHHHH
Confidence 999887 4479999999999999872 356554444
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=1.3e-24 Score=209.73 Aligned_cols=306 Identities=19% Similarity=0.199 Sum_probs=194.4
Q ss_pred cEEEEEcCC-CccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHH
Q 012096 13 CHIVALPYP-GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 13 ~~il~~~~~-~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
|||+|...+ |.||+.++++||++| + ||+|+|++.....+.+.+. +.+..+++-........-+....+.
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L-r---g~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL-R---GHEVTFITSGPAPEFLKPR------FPVREIPGLGPIQENGRLDRWKTVR 70 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH-c---cCceEEEEcCCcHHHhccc------cCEEEccCceEeccCCccchHHHHH
Confidence 688888776 889999999999999 5 7999999998766655432 3444454222111111111111111
Q ss_pred HHH---HhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCc
Q 012096 92 SVS---TKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVEL 168 (471)
Q Consensus 92 ~~~---~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 168 (471)
... ......++++.+.++. .+||+||+|. .+.+..+|+..|||++.+........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------------------- 128 (318)
T PF13528_consen 71 NNIRWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------------------- 128 (318)
T ss_pred HHHHhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc-------------------
Confidence 111 1223344555555544 3799999994 44467889999999999866543210
Q ss_pred ccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhh--ccccccEEEEcchHHhhHHHHHHHHhcCCCCccccc
Q 012096 169 SERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVS--KVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIG 246 (471)
Q Consensus 169 ~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 246 (471)
....++. .........+... ........+..+++ .. .. ...+..++|
T Consensus 129 ------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-------~~-~~~~~~~~~ 177 (318)
T PF13528_consen 129 ------PNFWLPW----------------DQDFGRLIERYIDRYHFPPADRRLALSFY-PP-------LP-PFFRVPFVG 177 (318)
T ss_pred ------ccCCcch----------------hhhHHHHHHHhhhhccCCcccceecCCcc-cc-------cc-ccccccccC
Confidence 0000000 0001111111111 13334444444443 11 00 123466788
Q ss_pred cCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCCCc
Q 012096 247 PTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSG-VRFFWVSRGDTSW 325 (471)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~-~~vi~~~~~~~~~ 325 (471)
|+..+.... .. . .+++.|+|++|..... .++++++..+ +++++. +...
T Consensus 178 p~~~~~~~~-------------~~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~-- 226 (318)
T PF13528_consen 178 PIIRPEIRE-------------LP-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA-- 226 (318)
T ss_pred chhcccccc-------------cC-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc--
Confidence 887654321 00 0 1334899999988753 6667777777 676665 4432
Q ss_pred cccccCCCceEeecc--chHHhhhhcccceeeccCCcchHHHHHHcCCceecccc--cccccchhhhhhhhhcceeeeec
Q 012096 326 FKDGCVDRGIVVPWC--DQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPI--MMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 326 ~~~~~~~nv~v~~~~--pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~--~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
.+..++|+.+.+|. +..++|+.+++ +|||||+||++|++++|+|+|++|. ..||..||+++++. |+|+.++.
T Consensus 227 -~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~-G~~~~~~~ 302 (318)
T PF13528_consen 227 -ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEEL-GLGIVLSQ 302 (318)
T ss_pred -ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHC-CCeEEccc
Confidence 12226799999986 35668999998 9999999999999999999999999 78999999999966 99999987
Q ss_pred CCCCCCCccCHHHHHHHHHHH
Q 012096 402 PEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~ 422 (471)
.+++++.|.++|+++
T Consensus 303 ------~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 303 ------EDLTPERLAEFLERL 317 (318)
T ss_pred ------ccCCHHHHHHHHhcC
Confidence 458999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.2e-23 Score=201.40 Aligned_cols=312 Identities=20% Similarity=0.150 Sum_probs=202.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCc-EEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNV-FITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
++|++..+++-||+.|.++|+++|.+ +|+ +|.++.+....+....... ++.++.|+.+..........+...+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~--~g~~~v~~~~~~~~~e~~l~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~~ 75 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAK--RGWEQVIVLGTGDGLEAFLVKQY---GIEFELIPSGGLRRKGSLKLLKAPFK 75 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHh--hCccEEEEecccccceeeecccc---CceEEEEecccccccCcHHHHHHHHH
Confidence 47889999999999999999999999 999 5888766554443333221 67888887544322222112222222
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcc
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELS 169 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (471)
.... ....+.++++. +||+||....+ ..+..+|..+|||+++
T Consensus 76 ~~~~--~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i----------------------------- 119 (357)
T COG0707 76 LLKG--VLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVII----------------------------- 119 (357)
T ss_pred HHHH--HHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEE-----------------------------
Confidence 2111 11245567765 59999996655 5667789999999999
Q ss_pred cCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCC
Q 012096 170 ERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTI 249 (471)
Q Consensus 170 ~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 249 (471)
.+.+.+||+.+ +...... ..+..+|+..+. -.-..+++.+|-..
T Consensus 120 ----hEqn~~~G~an--------------k~~~~~a-----------~~V~~~f~~~~~-------~~~~~~~~~tG~Pv 163 (357)
T COG0707 120 ----HEQNAVPGLAN--------------KILSKFA-----------KKVASAFPKLEA-------GVKPENVVVTGIPV 163 (357)
T ss_pred ----EecCCCcchhH--------------HHhHHhh-----------ceeeeccccccc-------cCCCCceEEecCcc
Confidence 45667777531 1111111 112333332110 00123577788666
Q ss_pred CCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHH-HHHHHHHHHhCCCcEEEEEcCCC-Cccc
Q 012096 250 PYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQ-MDEIVAGVRNSGVRFFWVSRGDT-SWFK 327 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~-~~~~~~al~~~~~~vi~~~~~~~-~~~~ 327 (471)
+.+-.. .+.....+.... ++++|+|..||++....+. +..++..+.+ ..++++..+.+. +...
T Consensus 164 r~~~~~-------------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~ 228 (357)
T COG0707 164 RPEFEE-------------LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELK 228 (357)
T ss_pred cHHhhc-------------cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHH
Confidence 543221 011111111111 4569999999999754433 2223333333 578888887764 2222
Q ss_pred cccC-CC-ceEeeccchHH-hhhhcccceeeccCCcchHHHHHHcCCceeccccc-c---cccchhhhhhhhhcceeeee
Q 012096 328 DGCV-DR-GIVVPWCDQLE-VLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIM-M---DQVPNSKLIVEDWKIGWKVK 400 (471)
Q Consensus 328 ~~~~-~n-v~v~~~~pq~~-lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~-~---DQ~~na~~v~~~lG~G~~l~ 400 (471)
.... .+ +.+..|.+++. +|..+++ +||++|.+|+.|++++|+|+|.+|.. + ||..||+.++++ |.|..++
T Consensus 229 ~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~ 305 (357)
T COG0707 229 SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIR 305 (357)
T ss_pred HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEec
Confidence 2211 22 77889988654 8999999 99999999999999999999999973 3 899999999988 9999999
Q ss_pred cCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 401 KPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
. ..+|.++|.+.|.+++++
T Consensus 306 ~------~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 306 Q------SELTPEKLAELILRLLSN 324 (357)
T ss_pred c------ccCCHHHHHHHHHHHhcC
Confidence 8 448999999999999986
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=6.8e-22 Score=190.45 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=90.9
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHhCCC-cEEEEEcCCCCccccccCCCceEeeccc--hHHhhhhcccceeeccCC
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRNSGV-RFFWVSRGDTSWFKDGCVDRGIVVPWCD--QLEVLCHSSIGGFWTHCG 359 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~-~vi~~~~~~~~~~~~~~~~nv~v~~~~p--q~~lL~~~~~~~~IthgG 359 (471)
++.|+|.+|+... ..+++++.+.+. .+|+ +.. +......++|+.+.+|.| ..++|..+++ +|||||
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~~~~i~--~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G 256 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIANVKFVC--YSY-EVAKNSYNENVEIRRITTDNFKELIKNAEL--VITHGG 256 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCCeEEEE--eCC-CCCccccCCCEEEEECChHHHHHHHHhCCE--EEECCC
Confidence 3468888887543 345677777663 4442 221 112233467999999997 4557788888 999999
Q ss_pred cchHHHHHHcCCceecccccc--cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 360 LNSTLEAAYAGVPMLTFPIMM--DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 360 ~~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
++|++|++++|+|++++|... ||..||+.+++. |+|+.++. . .+ ++.+++.++++|
T Consensus 257 ~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~-~-----~~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 257 FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEY-K-----EL---RLLEAILDIRNM 314 (321)
T ss_pred hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcCh-h-----hH---HHHHHHHhcccc
Confidence 999999999999999999855 899999999977 99999987 2 23 666777777777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=7.2e-19 Score=172.55 Aligned_cols=341 Identities=14% Similarity=0.075 Sum_probs=198.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch--hhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL--SFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAF 89 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 89 (471)
||||+|+..+..||....+.|+++|.+ +||+|++++.+... ...+.. ++.+..++..-.........+...
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~--~g~ev~vv~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~l~~~ 73 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKK--RGWEVLYLGTARGMEARLVPKA-----GIEFHFIPSGGLRRKGSLANLKAP 73 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHh--CCCEEEEEECCCchhhhccccC-----CCcEEEEeccCcCCCChHHHHHHH
Confidence 689999999888999999999999999 99999999986521 222222 666666653211111000111111
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCC
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVE 167 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (471)
.... ..-..+..++++ .+||+|++.... ..+..+++..++|+|.....
T Consensus 74 ~~~~--~~~~~~~~~ik~-----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~----------------------- 123 (357)
T PRK00726 74 FKLL--KGVLQARKILKR-----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN----------------------- 123 (357)
T ss_pred HHHH--HHHHHHHHHHHh-----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-----------------------
Confidence 1111 011113334443 269999999633 44556678889999863110
Q ss_pred cccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCcccccc
Q 012096 168 LSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGP 247 (471)
Q Consensus 168 ~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp 247 (471)
..++ . ..+... ...+.++..+...+. . .-..++.++|+
T Consensus 124 ----------~~~~-----------~-------~~r~~~------~~~d~ii~~~~~~~~-------~-~~~~~i~vi~n 161 (357)
T PRK00726 124 ----------AVPG-----------L-------ANKLLA------RFAKKVATAFPGAFP-------E-FFKPKAVVTGN 161 (357)
T ss_pred ----------CCcc-----------H-------HHHHHH------HHhchheECchhhhh-------c-cCCCCEEEECC
Confidence 0000 0 000000 112222222211110 0 12356777887
Q ss_pred CCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCC--cEEEEEcCCC-C
Q 012096 248 TIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGV--RFFWVSRGDT-S 324 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~--~vi~~~~~~~-~ 324 (471)
........ .... .+-+...++..+|++..|+.... .....+.+++.++.. .++|.+|... +
T Consensus 162 ~v~~~~~~------------~~~~--~~~~~~~~~~~~i~~~gg~~~~~--~~~~~l~~a~~~~~~~~~~~~~~G~g~~~ 225 (357)
T PRK00726 162 PVREEILA------------LAAP--PARLAGREGKPTLLVVGGSQGAR--VLNEAVPEALALLPEALQVIHQTGKGDLE 225 (357)
T ss_pred CCChHhhc------------ccch--hhhccCCCCCeEEEEECCcHhHH--HHHHHHHHHHHHhhhCcEEEEEcCCCcHH
Confidence 76543211 0000 01112122344677766664321 122233366655442 4556666543 1
Q ss_pred ccccc--cCCCceEeeccc-hHHhhhhcccceeeccCCcchHHHHHHcCCceecccc----cccccchhhhhhhhhccee
Q 012096 325 WFKDG--CVDRGIVVPWCD-QLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPI----MMDQVPNSKLIVEDWKIGW 397 (471)
Q Consensus 325 ~~~~~--~~~nv~v~~~~p-q~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~lG~G~ 397 (471)
.+... .+-++.+.+|++ ..+++..+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|+
T Consensus 226 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~ 302 (357)
T PRK00726 226 EVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAAL 302 (357)
T ss_pred HHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEE
Confidence 11111 222377889984 5679999999 9999999999999999999999997 36899999999977 9999
Q ss_pred eeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHH
Q 012096 398 KVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDI 465 (471)
Q Consensus 398 ~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (471)
.++. ..++++.|.++|.++++| +++++...+-+.++. +.++..+.++.+.+.+
T Consensus 303 ~~~~------~~~~~~~l~~~i~~ll~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 303 LIPQ------SDLTPEKLAEKLLELLSD-----PERLEAMAEAARALG----KPDAAERLADLIEELA 355 (357)
T ss_pred EEEc------ccCCHHHHHHHHHHHHcC-----HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHh
Confidence 9987 336899999999999998 666655544444332 3555555555555443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=2.2e-17 Score=161.53 Aligned_cols=312 Identities=16% Similarity=0.085 Sum_probs=182.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESV 93 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 93 (471)
+|+|.+.++.||....+.|++.|.+ +||+|++++....... ... ...++++..++-...........+...+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~--~G~ev~v~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRE--RGAEVLFLGTKRGLEA-RLV--PKAGIPLHTIPVGGLRRKGSLKKLKAPFKLL 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHh--CCCEEEEEECCCcchh-hcc--cccCCceEEEEecCcCCCChHHHHHHHHHHH
Confidence 4889999999999999999999999 9999999987542211 100 0115666666532111111111111111111
Q ss_pred HHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccC
Q 012096 94 STKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSER 171 (471)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (471)
. ....+..++++. +||+|++.... .++..+|+.+++|++.....
T Consensus 76 -~-~~~~~~~~i~~~-----~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~--------------------------- 121 (350)
T cd03785 76 -K-GVLQARKILKKF-----KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN--------------------------- 121 (350)
T ss_pred -H-HHHHHHHHHHhc-----CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC---------------------------
Confidence 1 111233444442 69999987533 44567788899999863110
Q ss_pred CccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCC
Q 012096 172 GEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPY 251 (471)
Q Consensus 172 ~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~ 251 (471)
..++. .++. .....+.++..+-...+. . -+.++.++|.....
T Consensus 122 ------~~~~~-------------------~~~~-----~~~~~~~vi~~s~~~~~~----~----~~~~~~~i~n~v~~ 163 (350)
T cd03785 122 ------AVPGL-------------------ANRL-----LARFADRVALSFPETAKY----F----PKDKAVVTGNPVRE 163 (350)
T ss_pred ------CCccH-------------------HHHH-----HHHhhCEEEEcchhhhhc----C----CCCcEEEECCCCch
Confidence 00000 0000 012244455544322221 0 12456677765543
Q ss_pred cccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCC-Cccccc
Q 012096 252 FEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSS-VQMDEIVAGVRNSGVRFFWVSRGDT-SWFKDG 329 (471)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~-~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~~ 329 (471)
.... . .+. .+.+...+++.+|++..|+...... +.+..++..+.+.+..+++.+|... +.+.+.
T Consensus 164 ~~~~------------~-~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~ 229 (350)
T cd03785 164 EILA------------L-DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKA 229 (350)
T ss_pred HHhh------------h-hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHH
Confidence 2111 0 111 1222222344467676666653211 1222333344333455666665542 112111
Q ss_pred ---cCCCceEeecc-chHHhhhhcccceeeccCCcchHHHHHHcCCceecccc----cccccchhhhhhhhhcceeeeec
Q 012096 330 ---CVDRGIVVPWC-DQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPI----MMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 330 ---~~~nv~v~~~~-pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
..+|+.+.+|+ +..++|..+++ +|+++|.+++.||+++|+|+|++|. ..+|..|+..+.+. |.|+.++.
T Consensus 230 ~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~ 306 (350)
T cd03785 230 YEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQ 306 (350)
T ss_pred HhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEec
Confidence 13589999998 45669999999 9999999999999999999999986 35788999999977 99999986
Q ss_pred CCCCCCCccCHHHHHHHHHHHhcC
Q 012096 402 PEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
...+.++|.++|.+++++
T Consensus 307 ------~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 307 ------EELTPERLAAALLELLSD 324 (350)
T ss_pred ------CCCCHHHHHHHHHHHhcC
Confidence 335899999999999987
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.73 E-value=2e-15 Score=147.58 Aligned_cols=304 Identities=15% Similarity=0.130 Sum_probs=168.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh--hhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS--FIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFV 90 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 90 (471)
|||+|++++..||+...+.|+++|.+ +||+|++++.+.... .... .++++..++-...... .....+
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~--~g~eV~vv~~~~~~~~~~~~~-----~g~~~~~i~~~~~~~~----~~~~~l 69 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIK--RGVEVLWLGTKRGLEKRLVPK-----AGIEFYFIPVGGLRRK----GSFRLI 69 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHh--CCCEEEEEeCCCcchhccccc-----CCCceEEEeccCcCCC----ChHHHH
Confidence 48999999999999988899999999 999999998744211 1111 2666666652211111 111111
Q ss_pred HHHHHh--chHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCC
Q 012096 91 ESVSTK--MEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPV 166 (471)
Q Consensus 91 ~~~~~~--~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (471)
...... ....+..++++ .+||+|++.... ..+..+++.+++|++.... .
T Consensus 70 ~~~~~~~~~~~~l~~~i~~-----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~--------------------- 122 (348)
T TIGR01133 70 KTPLKLLKAVFQARRILKK-----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-N--------------------- 122 (348)
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-C---------------------
Confidence 111111 11123334444 369999997543 3345568888999975310 0
Q ss_pred CcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccc
Q 012096 167 ELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIG 246 (471)
Q Consensus 167 ~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vG 246 (471)
..++ ...+.. .+..+.++..+. +... +. ...++|
T Consensus 123 -----------~~~~------------------~~~~~~------~~~~d~ii~~~~-~~~~---------~~-~~~~i~ 156 (348)
T TIGR01133 123 -----------AVPG------------------LTNKLL------SRFAKKVLISFP-GAKD---------HF-EAVLVG 156 (348)
T ss_pred -----------CCcc------------------HHHHHH------HHHhCeeEECch-hHhh---------cC-CceEEc
Confidence 0000 000000 122344444332 1110 11 224455
Q ss_pred cCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHh---CCCcEEEEEcCCC
Q 012096 247 PTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRN---SGVRFFWVSRGDT 323 (471)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~---~~~~vi~~~~~~~ 323 (471)
......... + +.. .+.+.-.+++.+|.+..|+... ......+.++++. .+.++++..++..
T Consensus 157 n~v~~~~~~------------~-~~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~ 220 (348)
T TIGR01133 157 NPVRQEIRS------------L-PVP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND 220 (348)
T ss_pred CCcCHHHhc------------c-cch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch
Confidence 443321110 0 000 1122222233355554555543 2212223344443 3456665555432
Q ss_pred -CccccccCC-C-ceEeecc--chHHhhhhcccceeeccCCcchHHHHHHcCCceeccccc---ccccchhhhhhhhhcc
Q 012096 324 -SWFKDGCVD-R-GIVVPWC--DQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIM---MDQVPNSKLIVEDWKI 395 (471)
Q Consensus 324 -~~~~~~~~~-n-v~v~~~~--pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~lG~ 395 (471)
+.+.....+ + ..++.|. +..++|..+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+++. |.
T Consensus 221 ~~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~ 297 (348)
T TIGR01133 221 LEKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GA 297 (348)
T ss_pred HHHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CC
Confidence 112111111 1 1233344 55678999999 99999988999999999999999863 4678899999866 99
Q ss_pred eeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 396 GWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
|..++. ...++++|.++|.++++|
T Consensus 298 G~~~~~------~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 298 GLVIRQ------KELLPEKLLEALLKLLLD 321 (348)
T ss_pred EEEEec------ccCCHHHHHHHHHHHHcC
Confidence 998876 335799999999999987
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=2.8e-15 Score=147.65 Aligned_cols=346 Identities=12% Similarity=0.011 Sum_probs=188.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
.||+|+++++.||+.|. +|+++|++ +|++|.|++.... .++..+.. ..+.+..++-. .+.+.+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~--~~~~~~~~g~gg~--~m~~~g~~-~~~~~~~l~v~---------G~~~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKE--HYPNARFIGVAGP--RMAAEGCE-VLYSMEELSVM---------GLREVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHh--cCCCcEEEEEccH--HHHhCcCc-cccChHHhhhc---------cHHHHHHH
Confidence 48999999999999999 99999999 9999999986532 33333210 12333333311 11111111
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCch-hh--HHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcc
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL-AW--AVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELS 169 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 169 (471)
... ....+.+..+.+++ .+||+||.-.+. .. ....|+.+|||++.+.+-
T Consensus 71 ~~~-~~~~~~~~~~~l~~--~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P------------------------- 122 (385)
T TIGR00215 71 LGR-LLKIRKEVVQLAKQ--AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP------------------------- 122 (385)
T ss_pred HHH-HHHHHHHHHHHHHh--cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-------------------------
Confidence 111 11112233333333 379999964433 23 233788999999985311
Q ss_pred cCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCC
Q 012096 170 ERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTI 249 (471)
Q Consensus 170 ~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 249 (471)
.. +-+++. .++.+.+. .+.++. .++. +... .+. ..-+..++|...
T Consensus 123 ----~~-waw~~~--------------~~r~l~~~----------~d~v~~-~~~~-e~~~---~~~-~g~~~~~vGnPv 167 (385)
T TIGR00215 123 ----QV-WAWRKW--------------RAKKIEKA----------TDFLLA-ILPF-EKAF---YQK-KNVPCRFVGHPL 167 (385)
T ss_pred ----cH-hhcCcc--------------hHHHHHHH----------HhHhhc-cCCC-cHHH---HHh-cCCCEEEECCch
Confidence 00 000110 01111111 111121 1111 1111 111 233566788665
Q ss_pred CCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCC-
Q 012096 250 PYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDT- 323 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~- 323 (471)
.+..... . +......+-+.-.+++++|.+-.||....-...+..+++++..+ +.++++......
T Consensus 168 ~~~~~~~-~---------~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~ 237 (385)
T TIGR00215 168 LDAIPLY-K---------PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR 237 (385)
T ss_pred hhhcccc-C---------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh
Confidence 4321100 0 01111222222233456888888888753233344566555443 244555443321
Q ss_pred -Ccc---cccc--CCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecc----cccc---------cccc
Q 012096 324 -SWF---KDGC--VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTF----PIMM---------DQVP 384 (471)
Q Consensus 324 -~~~---~~~~--~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~ 384 (471)
+.+ .... ...+.+..+ +..++|..+++ +|+.+|..|+ |++++|+|+|++ |+.. +|..
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~ 313 (385)
T TIGR00215 238 RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYIS 313 (385)
T ss_pred HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeee
Confidence 111 1111 112333322 34568999999 9999999888 999999999999 8632 3888
Q ss_pred hhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHH----HHHHHHHHHHHHHHHhHhcCCCcHHHHHH
Q 012096 385 NSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERK----AMSKRAREVQEICQEAVAENGSSITNFDA 460 (471)
Q Consensus 385 na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~----~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 460 (471)
|+..+... ++...+-. ..+|++.|.+.+.++++| + ++++...+--.++++...++|.+.+..+.
T Consensus 314 ~~nil~~~-~~~pel~q------~~~~~~~l~~~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 381 (385)
T TIGR00215 314 LPNILANR-LLVPELLQ------EECTPHPLAIALLLLLEN-----GLKAYKEMHRERQFFEELRQRIYCNADSERAAQA 381 (385)
T ss_pred ccHHhcCC-ccchhhcC------CCCCHHHHHHHHHHHhcC-----CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999966 77766665 447999999999999988 5 55554444444445544556666666654
Q ss_pred HH
Q 012096 461 FL 462 (471)
Q Consensus 461 ~~ 462 (471)
++
T Consensus 382 i~ 383 (385)
T TIGR00215 382 VL 383 (385)
T ss_pred Hh
Confidence 43
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=9.4e-15 Score=144.58 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=110.4
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhC-CCcEEEEEcCCC---Cccc---cccCCCceEeeccchH-Hhhhhcccce
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNS-GVRFFWVSRGDT---SWFK---DGCVDRGIVVPWCDQL-EVLCHSSIGG 353 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~-~~~vi~~~~~~~---~~~~---~~~~~nv~v~~~~pq~-~lL~~~~~~~ 353 (471)
++++|++..|+.... ..+..+++++.+. +.++++..+.+. +.+. ...++|+.+.+|+++. +++..+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~-- 276 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSC-- 276 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccE--
Confidence 445788877887642 2345567777654 467777666432 1111 1234589999999874 69999998
Q ss_pred eeccCCcchHHHHHHcCCceecc-cccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHH
Q 012096 354 FWTHCGLNSTLEAAYAGVPMLTF-PIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKA 432 (471)
Q Consensus 354 ~IthgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (471)
+|+.+|..++.||+++|+|+|+. |..+.|..|+..+++. |+|+.. . +.+++.++|.++++| +.
T Consensus 277 ~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~-~---------~~~~l~~~i~~ll~~-----~~ 340 (380)
T PRK13609 277 MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI-R---------DDEEVFAKTEALLQD-----DM 340 (380)
T ss_pred EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE-C---------CHHHHHHHHHHHHCC-----HH
Confidence 99999988899999999999984 6777788899988866 887643 2 778999999999987 55
Q ss_pred HHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 012096 433 MSKRAREVQEICQEAVAENGSSITNFDAFLNDISL 467 (471)
Q Consensus 433 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (471)
.++.. ++..++. ....++.+.++.+++.+..
T Consensus 341 ~~~~m---~~~~~~~-~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 341 KLLQM---KEAMKSL-YLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHHH---HHHHHHh-CCCchHHHHHHHHHHhhhh
Confidence 44332 2333221 2244555666666555543
No 37
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.66 E-value=8.8e-15 Score=133.75 Aligned_cols=333 Identities=14% Similarity=0.129 Sum_probs=189.4
Q ss_pred CCCcEEEEEcCC--CccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCC------chh
Q 012096 10 GRMCHIVALPYP--GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPS------ELV 81 (471)
Q Consensus 10 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~------~~~ 81 (471)
.++++|+|++.- +.||+..++.+|++|.+..+|.+|++++......-+.- +.++.++.+|..... ..+
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~----~~gVd~V~LPsl~k~~~G~~~~~d 82 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG----PAGVDFVKLPSLIKGDNGEYGLVD 82 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC----cccCceEecCceEecCCCceeeee
Confidence 345699999996 66899999999999999666999999998654433332 238999999943222 222
Q ss_pred hhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 82 RARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
...+..++.+.. ...+...++. .+||++|+|.+-. ++ -..+ .|.+. -+...
T Consensus 83 ~~~~l~e~~~~R----s~lil~t~~~-----fkPDi~IVd~~P~-Gl--r~EL-~ptL~----------------yl~~~ 133 (400)
T COG4671 83 LDGDLEETKKLR----SQLILSTAET-----FKPDIFIVDKFPF-GL--RFEL-LPTLE----------------YLKTT 133 (400)
T ss_pred cCCCHHHHHHHH----HHHHHHHHHh-----cCCCEEEEecccc-ch--hhhh-hHHHH----------------HHhhc
Confidence 222333333332 2223334444 4699999996543 31 1111 01100 00101
Q ss_pred CCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCc--hHHHHHHHHhhccccccEEEEcchHHhhHH--HHHHHHhc
Q 012096 162 GHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGR--QTLQRALESVSKVSKAQCLLLSSVYELEAK--VNDTLKAK 237 (471)
Q Consensus 162 ~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~--~~~~~~~~ 237 (471)
+ ...+-++ ....+.+....+.++ ...+.. .+..+.+++...+.+-.+ .++++..
T Consensus 134 ~-------------t~~vL~l--r~i~D~p~~~~~~w~~~~~~~~I------~r~yD~V~v~GdP~f~d~~~~~~~~~~- 191 (400)
T COG4671 134 G-------------TRLVLGL--RSIRDIPQELEADWRRAETVRLI------NRFYDLVLVYGDPDFYDPLTEFPFAPA- 191 (400)
T ss_pred C-------------Ccceeeh--HhhhhchhhhccchhhhHHHHHH------HHhheEEEEecCccccChhhcCCccHh-
Confidence 0 0000000 011111111111111 111111 122233343333322111 1111111
Q ss_pred CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHh-CCCc--
Q 012096 238 FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRN-SGVR-- 314 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~-~~~~-- 314 (471)
....+.|+|.+ ... .+.. +.+.. .. +++..|+||-|.... ..+.+...++|-.. .+.+
T Consensus 192 i~~k~~ytG~v-q~~-~~~~----------~~p~~-----~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~ 252 (400)
T COG4671 192 IRAKMRYTGFV-QRS-LPHL----------PLPPH-----EA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHK 252 (400)
T ss_pred hhhheeEeEEe-ecc-CcCC----------CCCCc-----CC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcc
Confidence 34578999999 322 2110 11111 11 344478888876653 34555556666544 2333
Q ss_pred EEEEEcCC-C----CccccccC--CCceEeeccch-HHhhhhcccceeeccCCcchHHHHHHcCCceeccccc---cccc
Q 012096 315 FFWVSRGD-T----SWFKDGCV--DRGIVVPWCDQ-LEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIM---MDQV 383 (471)
Q Consensus 315 vi~~~~~~-~----~~~~~~~~--~nv~v~~~~pq-~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~---~DQ~ 383 (471)
-+..+|.. + ..+....+ +++.+..|-.+ ..++..++. +|+-||+||++|-|.+|+|.+++|.. .+|-
T Consensus 253 ~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQl 330 (400)
T COG4671 253 WLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQL 330 (400)
T ss_pred eEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHH
Confidence 33334443 2 12222234 57999999875 458888888 99999999999999999999999985 3899
Q ss_pred chhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 384 PNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 384 ~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.-|.|++ .||+--+|.. .+++++.|+++|...+..
T Consensus 331 iRA~Rl~-~LGL~dvL~p------e~lt~~~La~al~~~l~~ 365 (400)
T COG4671 331 IRAQRLE-ELGLVDVLLP------ENLTPQNLADALKAALAR 365 (400)
T ss_pred HHHHHHH-hcCcceeeCc------ccCChHHHHHHHHhcccC
Confidence 9999999 5598888877 458999999999998873
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=7.6e-15 Score=137.92 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=77.1
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHhC--CCcEEEEEcCCCCc---ccc--ccCCCceEeeccchH-Hhhhhcccceee
Q 012096 284 SVLYVSLGSLWSVSSVQMDEIVAGVRNS--GVRFFWVSRGDTSW---FKD--GCVDRGIVVPWCDQL-EVLCHSSIGGFW 355 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~~~~~~~~al~~~--~~~vi~~~~~~~~~---~~~--~~~~nv~v~~~~pq~-~lL~~~~~~~~I 355 (471)
+.|+|++|..... +....+++++.+. +.++.+++|..... +.. ....|+.+..|++++ ++|..+++ +|
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl--~I 246 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADL--AI 246 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCE--EE
Confidence 4789999966542 2445566777664 46777877764321 111 123589999999976 69999999 99
Q ss_pred ccCCcchHHHHHHcCCceecccccccccchhhhh
Q 012096 356 THCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLI 389 (471)
Q Consensus 356 thgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v 389 (471)
|+|| +|++|++++|+|+|++|...+|..||+.+
T Consensus 247 s~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~~ 279 (279)
T TIGR03590 247 GAAG-STSWERCCLGLPSLAICLAENQQSNSQQL 279 (279)
T ss_pred ECCc-hHHHHHHHcCCCEEEEEecccHHHHhhhC
Confidence 9999 99999999999999999999999999753
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=4.3e-14 Score=139.97 Aligned_cols=170 Identities=13% Similarity=0.068 Sum_probs=90.7
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCC--Ccccccc----CCCceEeeccchHHhhhhcc
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDT--SWFKDGC----VDRGIVVPWCDQLEVLCHSS 350 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~--~~~~~~~----~~nv~v~~~~pq~~lL~~~~ 350 (471)
++++|++..||...........++++++.+ +.+++|..+... +.+.+.. .-++.+.. -.-..++..++
T Consensus 185 ~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aD 263 (380)
T PRK00025 185 DARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD-GQKREAMAAAD 263 (380)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCC
Confidence 344677777766542122234455554432 356777654221 1121111 11333322 12456889999
Q ss_pred cceeeccCCcchHHHHHHcCCceeccccc------c--cccch-h----hhhhhhhcceeeeecCCCCCCCccCHHHHHH
Q 012096 351 IGGFWTHCGLNSTLEAAYAGVPMLTFPIM------M--DQVPN-S----KLIVEDWKIGWKVKKPEIGSESLVTRDEITE 417 (471)
Q Consensus 351 ~~~~IthgG~~s~~eal~~GvP~v~~P~~------~--DQ~~n-a----~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~ 417 (471)
+ +|+.+|.+++ |++++|+|+|++|-. . .|..| + ..+++. +++..+.. ...+++.|.+
T Consensus 264 l--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~------~~~~~~~l~~ 333 (380)
T PRK00025 264 A--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQ------EEATPEKLAR 333 (380)
T ss_pred E--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcC------CCCCHHHHHH
Confidence 9 9999998887 999999999998432 1 22222 2 223322 22333332 2368999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhhc
Q 012096 418 LVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLAH 469 (471)
Q Consensus 418 ~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (471)
+|.++++| ++.++...+-.+.+++.. ..|++.+.++.+.+ +..++
T Consensus 334 ~i~~ll~~-----~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~-~~~~~ 378 (380)
T PRK00025 334 ALLPLLAD-----GARRQALLEGFTELHQQL-RCGADERAAQAVLE-LLKQR 378 (380)
T ss_pred HHHHHhcC-----HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH-Hhhhc
Confidence 99999998 554443333332233322 24555555544444 43433
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=2.6e-13 Score=134.43 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=109.0
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHH-Hh-CCCcEEEEEcCCC---Cccccc--cCCCceEeeccchH-Hhhhhcccce
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGV-RN-SGVRFFWVSRGDT---SWFKDG--CVDRGIVVPWCDQL-EVLCHSSIGG 353 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al-~~-~~~~vi~~~~~~~---~~~~~~--~~~nv~v~~~~pq~-~lL~~~~~~~ 353 (471)
++++|++..|+... ...+..+++++ +. .+.++++..|.+. +.+... ..+++.+.+|+++. +++..+++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aDl-- 276 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQL-- 276 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhhE--
Confidence 45588888898873 13344455553 32 2467766666542 112211 23578888999754 58999999
Q ss_pred eeccCCcchHHHHHHcCCceecc-cccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHH
Q 012096 354 FWTHCGLNSTLEAAYAGVPMLTF-PIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKA 432 (471)
Q Consensus 354 ~IthgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (471)
+|+..|..|+.||+++|+|+|++ |..+.|..|+..+++. |+|+... +.+++.++|.++++| ++
T Consensus 277 ~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~----------~~~~l~~~i~~ll~~-----~~ 340 (391)
T PRK13608 277 MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD----------TPEEAIKIVASLTNG-----NE 340 (391)
T ss_pred EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC----------CHHHHHHHHHHHhcC-----HH
Confidence 99998888999999999999998 7777778899999977 9997642 788899999999987 43
Q ss_pred HHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 012096 433 MSKRAREVQEICQEAVAENGSSITNFDAFLNDISL 467 (471)
Q Consensus 433 ~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (471)
.+ +++++.+++. ....+..+.++.+.+.+..
T Consensus 341 ~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 341 QL---TNMISTMEQD-KIKYATQTICRDLLDLIGH 371 (391)
T ss_pred HH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhhh
Confidence 22 2333333332 1234555556665555543
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.56 E-value=6.6e-13 Score=130.90 Aligned_cols=352 Identities=11% Similarity=0.010 Sum_probs=190.7
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEE---EEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHH-hc
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFIT---FVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVST-KM 97 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt---~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~-~~ 97 (471)
+.|-=.-.++||++|+++.+|++|. +++.....+ +......+ .+..+|.+-... ......+..... ..
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~ip~~g-~~~~~~sgg~~~----~~~~~~~~~~~~gl~ 77 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLGIPIIG-PTKELPSGGFSY----QSLRGLLRDLRAGLV 77 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCCCceeC-CCCCCCCCCccC----CCHHHHHHHHHhhHH
Confidence 4455567789999999866799999 988875432 11110113 555555332211 222233333322 12
Q ss_pred hHHHH--HHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccCCccc
Q 012096 98 EAPFE--KVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERGEEV 175 (471)
Q Consensus 98 ~~~~~--~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 175 (471)
...++ .+++++. .+||+||+-.-+. .+.+|+.+|+|++.+.+.-...+- .+...... .+.
T Consensus 78 ~~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~----------~~~~~~~~----~~~ 139 (396)
T TIGR03492 78 GLTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW----------ESGPRRSP----SDE 139 (396)
T ss_pred HHHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee----------cCCCCCcc----chh
Confidence 22222 2455553 2699999887666 778899999999996443211000 00000000 000
Q ss_pred cccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhc-cccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCccc
Q 012096 176 VDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSK-VSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYFEI 254 (471)
Q Consensus 176 ~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~ 254 (471)
...+||... ..+ + .... .+.++.++.+. +. .. ++++. ..-++.++|-...+.-.
T Consensus 140 ~~~~~G~~~--------------~p~-e----~n~l~~~~a~~v~~~~-~~-t~---~~l~~-~g~k~~~vGnPv~d~l~ 194 (396)
T TIGR03492 140 YHRLEGSLY--------------LPW-E----RWLMRSRRCLAVFVRD-RL-TA---RDLRR-QGVRASYLGNPMMDGLE 194 (396)
T ss_pred hhccCCCcc--------------CHH-H----HHHhhchhhCEEeCCC-HH-HH---HHHHH-CCCeEEEeCcCHHhcCc
Confidence 000122110 111 1 1111 23334444333 22 11 12232 44588999977765421
Q ss_pred ccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhC----CCcEEEEEcCCC--Ccccc
Q 012096 255 KSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNS----GVRFFWVSRGDT--SWFKD 328 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~----~~~vi~~~~~~~--~~~~~ 328 (471)
. ... .-+ .+++++|.+-.||-...-.+.+..+++++..+ +.+|++.+.++. +.+..
T Consensus 195 ~-------------~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~ 256 (396)
T TIGR03492 195 P-------------PER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQA 256 (396)
T ss_pred c-------------ccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHH
Confidence 1 011 012 22345888989998764445556666666654 578888874332 11111
Q ss_pred cc-------------------CCCceEeeccc-hHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhh
Q 012096 329 GC-------------------VDRGIVVPWCD-QLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKL 388 (471)
Q Consensus 329 ~~-------------------~~nv~v~~~~p-q~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 388 (471)
.. .+++.+..+.. ..+++..+++ +|+.+|..| .|++..|+|+|++|.-..|. |+..
T Consensus 257 ~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~ 332 (396)
T TIGR03492 257 ILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGF 332 (396)
T ss_pred HHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHH
Confidence 00 01255555554 4569999999 999999766 99999999999999877775 9877
Q ss_pred hhhh---hcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHH
Q 012096 389 IVED---WKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462 (471)
Q Consensus 389 v~~~---lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (471)
+++. .|.++.+.. .+.+.|.+++.++++| +...++.. +..++....++++.+.++.+.
T Consensus 333 ~~~~~~l~g~~~~l~~--------~~~~~l~~~l~~ll~d-----~~~~~~~~---~~~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 333 AEAQSRLLGGSVFLAS--------KNPEQAAQVVRQLLAD-----PELLERCR---RNGQERMGPPGASARIAESIL 393 (396)
T ss_pred HHhhHhhcCCEEecCC--------CCHHHHHHHHHHHHcC-----HHHHHHHH---HHHHHhcCCCCHHHHHHHHHH
Confidence 6632 255666543 3669999999999987 55443333 122222233455555544443
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=1.2e-15 Score=132.44 Aligned_cols=132 Identities=16% Similarity=0.217 Sum_probs=96.4
Q ss_pred EEEEEeCCCcCCCHHH-HHHHHHHHHh--CCCcEEEEEcCCCC-ccc---cccCCCceEeeccc-hHHhhhhcccceeec
Q 012096 285 VLYVSLGSLWSVSSVQ-MDEIVAGVRN--SGVRFFWVSRGDTS-WFK---DGCVDRGIVVPWCD-QLEVLCHSSIGGFWT 356 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~-~~~~~~al~~--~~~~vi~~~~~~~~-~~~---~~~~~nv~v~~~~p-q~~lL~~~~~~~~It 356 (471)
+|+|+.||........ +..+...+.. ...+|+|..|.... ... ...+.|+.+.+|.+ ..+++..+++ +||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDl--vIs 78 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADL--VIS 78 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSE--EEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCE--EEe
Confidence 5899999887532211 2223333333 25788988886531 111 11125789999999 7779999999 999
Q ss_pred cCCcchHHHHHHcCCceecccccc----cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 357 HCGLNSTLEAAYAGVPMLTFPIMM----DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 357 hgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
|||.||++|++.+|+|+|++|... +|..||..+++. |+|+.+.. ...+.+.|.++|.+++++
T Consensus 79 ~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~------~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 79 HAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDE------SELNPEELAEAIEELLSD 144 (167)
T ss_dssp CS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSEC------CC-SCCCHHHHHHCHCCC
T ss_pred CCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCc------ccCCHHHHHHHHHHHHcC
Confidence 999999999999999999999988 999999999977 99999987 346789999999999987
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.45 E-value=1.8e-11 Score=121.09 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=91.8
Q ss_pred CCCeEEEEEeCCCcCCCHHHH-HHHHHHHH-----hCCCcEEEEEcCCC---Cccccc-cCCCceEeeccch-HHhhhhc
Q 012096 281 PDSSVLYVSLGSLWSVSSVQM-DEIVAGVR-----NSGVRFFWVSRGDT---SWFKDG-CVDRGIVVPWCDQ-LEVLCHS 349 (471)
Q Consensus 281 ~~~~~I~vs~GS~~~~~~~~~-~~~~~al~-----~~~~~vi~~~~~~~---~~~~~~-~~~nv~v~~~~pq-~~lL~~~ 349 (471)
+++++|++..|+........+ ..+...+. ..+.++++..|.+. +.+... ...++.+.+|+++ .++|..+
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aa 283 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGAC 283 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhC
Confidence 445578777776664333322 22222220 12356677776542 111111 1246888899985 4489999
Q ss_pred ccceeeccCCcchHHHHHHcCCceeccccccccc-chhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 350 SIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQV-PNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 350 ~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.. . ++++|.++|.+++++
T Consensus 284 Dv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~-~---------~~~~la~~i~~ll~~ 347 (382)
T PLN02605 284 DC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS-E---------SPKEIARIVAEWFGD 347 (382)
T ss_pred CE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec-C---------CHHHHHHHHHHHHcC
Confidence 99 999999999999999999999998766665 699988866 888754 3 889999999999976
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=2.5e-09 Score=104.62 Aligned_cols=156 Identities=14% Similarity=0.123 Sum_probs=95.1
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC-CCcEEEEEcCCCCccccccCCCceEeeccchHH---hhhhcccceeeccCC
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS-GVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLE---VLCHSSIGGFWTHCG 359 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~-~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~---lL~~~~~~~~IthgG 359 (471)
.+++..|+... ...+.+..++..+... +..+++.-.+...........|+.+.+|+++.+ ++..+++ +|..+.
T Consensus 198 ~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~ 275 (364)
T cd03814 198 PVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADV--FVFPSR 275 (364)
T ss_pred eEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCE--EEECcc
Confidence 56677777653 2333344444444332 345554433222111113356899999998655 7888888 886654
Q ss_pred ----cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHH
Q 012096 360 ----LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSK 435 (471)
Q Consensus 360 ----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~ 435 (471)
.+++.||+++|+|+|+.+.. .+...+++. +.|...+. -+.+++.++|.++++| +..++
T Consensus 276 ~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~--------~~~~~l~~~i~~l~~~-----~~~~~ 337 (364)
T cd03814 276 TETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP--------GDAEAFAAALAALLAD-----PELRR 337 (364)
T ss_pred cccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC--------CCHHHHHHHHHHHHcC-----HHHHH
Confidence 37899999999999987654 355566655 78888765 3778899999999987 44443
Q ss_pred HHHHHHHHHHHhHhcCCCcHHHHHHHHHH
Q 012096 436 RAREVQEICQEAVAENGSSITNFDAFLND 464 (471)
Q Consensus 436 ~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (471)
...+-+....+ .-+..+..+++++.
T Consensus 338 ~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 338 RMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred HHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 33322222221 33555555555543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.37 E-value=8.7e-13 Score=110.83 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=82.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCC--CCCchhhhhcHHHHHHH
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNV--IPSELVRARDFLAFVES 92 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--~~~~~~~~~~~~~~~~~ 92 (471)
|+|++.|+.||++|+++||++|++ |||+|++++++.+.+.+++. |+.|..++.. ..........+......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~--rGh~V~~~~~~~~~~~v~~~-----Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRR--RGHEVRLATPPDFRERVEAA-----GLEFVPIPGDSRLPRSLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH--TT-EEEEEETGGGHHHHHHT-----T-EEEESSSCGGGGHHHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhc--cCCeEEEeecccceeccccc-----CceEEEecCCcCcCcccchhhhhhhHHHH
Confidence 789999999999999999999999 99999999999999999887 8999999855 11000111111111111
Q ss_pred --HHHhchHHHHHHHHHhh-hcC--CCceEEEEcCchhhHHHHHhhcCCCeEEEecchHH
Q 012096 93 --VSTKMEAPFEKVLDFLQ-VEA--PVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 93 --~~~~~~~~~~~ll~~l~-~~~--~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
....+...+++...+.. ..+ ...|+++.+.....+..+|++++||++.....+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11111112222111111 000 35788888877788899999999999998766654
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.26 E-value=1.9e-08 Score=98.02 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=80.1
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHhC---CCcEEEEEcCCCCcccc----ccCCCceEeeccchHH---hhhhcccce
Q 012096 284 SVLYVSLGSLWSVSSVQMDEIVAGVRNS---GVRFFWVSRGDTSWFKD----GCVDRGIVVPWCDQLE---VLCHSSIGG 353 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~~~~~~~~al~~~---~~~vi~~~~~~~~~~~~----~~~~nv~v~~~~pq~~---lL~~~~~~~ 353 (471)
..+++..|+.... ..+..+++++..+ +.++++. |........ ....++.+.+|+++.+ ++..+++
T Consensus 191 ~~~i~~~G~~~~~--k~~~~li~~~~~l~~~~~~l~i~-G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~-- 265 (359)
T cd03823 191 RLRFGFIGQLTPH--KGVDLLLEAFKRLPRGDIELVIV-GNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDV-- 265 (359)
T ss_pred ceEEEEEecCccc--cCHHHHHHHHHHHHhcCcEEEEE-cCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCE--
Confidence 3666777776542 2233344444443 4666554 433211111 1246889999997544 6888888
Q ss_pred eec----cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 354 FWT----HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 354 ~It----hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+|. ..|. .++.||+++|+|+|+.+. ..+...+++. +.|...+. -+.+++.++|.++++|
T Consensus 266 ~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~--------~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 266 LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP--------GDAEDLAAALERLIDD 329 (359)
T ss_pred EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC--------CCHHHHHHHHHHHHhC
Confidence 663 2344 479999999999998654 3456666644 57887775 2689999999999987
No 47
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.24 E-value=2.7e-08 Score=99.04 Aligned_cols=332 Identities=14% Similarity=0.102 Sum_probs=164.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESV 93 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 93 (471)
||+|+-...+|. +..||++|.+ +||+|+++|.....+... +++...++....... ....+...+...
T Consensus 1 ~il~~~~~~p~~---~~~la~~L~~--~G~~v~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~-~~~~~~~~~~~~ 67 (396)
T cd03818 1 RILFVHQNFPGQ---FRHLAPALAA--QGHEVVFLTEPNAAPPPG-------GVRVVRYRPPRGPTS-GTHPYLREFEEA 67 (396)
T ss_pred CEEEECCCCchh---HHHHHHHHHH--CCCEEEEEecCCCCCCCC-------CeeEEEecCCCCCCC-CCCccchhHHHH
Confidence 477777666665 5679999999 999999999876543211 466666653322211 111222222222
Q ss_pred HHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhc-CCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccCC
Q 012096 94 STKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRR-NIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERG 172 (471)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 172 (471)
.......++.+. .+...+.+||+|++......++.+.+.+ ++|+|.++.......
T Consensus 68 ~~~~~~~~~~~~-~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~~----------------------- 123 (396)
T cd03818 68 VLRGQAVARALL-ALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRAE----------------------- 123 (396)
T ss_pred HHHHHHHHHHHH-HHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecCC-----------------------
Confidence 222222222222 2222225799999997666667677775 599998754322100
Q ss_pred ccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCc
Q 012096 173 EEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYF 252 (471)
Q Consensus 173 ~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~ 252 (471)
.....+.+... ..... .........-....+..++.++.+|-...+.- +..+..++..|..-+...
T Consensus 124 ~~~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~-----~~~~~~ki~vI~ngvd~~ 189 (396)
T cd03818 124 GADVGFDPEFP-------PSLDD--ALRLRNRNALILLALAQADAGVSPTRWQRSTF-----PAELRSRISVIHDGIDTD 189 (396)
T ss_pred CCCCCCCCCCC-------CchhH--HHHHHHhhhHhHHHHHhCCEEECCCHHHHhhC-----cHhhccceEEeCCCcccc
Confidence 00000111100 00000 00000000011234667888888876544321 111223333333222211
Q ss_pred ccccccccccccCCCCCCch---hccccccCCCCeEEEEEeCC-CcCCCHHHHHHHHHHHHh-----CCCcEEEEEcCCC
Q 012096 253 EIKSNLLTSTSLNINNEPDN---YFHWLDSQPDSSVLYVSLGS-LWSVSSVQMDEIVAGVRN-----SGVRFFWVSRGDT 323 (471)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~I~vs~GS-~~~~~~~~~~~~~~al~~-----~~~~vi~~~~~~~ 323 (471)
... +.+.. ......-.+++ .+.+..|. +.. ...+..+++|+.. .+.++++ +|++.
T Consensus 190 ~f~------------~~~~~~~~~~~~~~~~~~~-~~i~~vgR~l~~--~Kg~~~ll~a~~~l~~~~~~~~lvi-vG~~~ 253 (396)
T cd03818 190 RLR------------PDPQARLRLPNGRVLTPGD-EVITFVARNLEP--YRGFHVFMRALPRLLRARPDARVVI-VGGDG 253 (396)
T ss_pred ccC------------CCchhhhcccccccCCCCC-eEEEEECCCccc--ccCHHHHHHHHHHHHHHCCCcEEEE-EcCCC
Confidence 100 01100 00000001122 33444453 332 1223334444432 2355554 34311
Q ss_pred ----------C----ccccc-----cCCCceEeeccchHH---hhhhcccceeecc-CCc-chHHHHHHcCCceeccccc
Q 012096 324 ----------S----WFKDG-----CVDRGIVVPWCDQLE---VLCHSSIGGFWTH-CGL-NSTLEAAYAGVPMLTFPIM 379 (471)
Q Consensus 324 ----------~----~~~~~-----~~~nv~v~~~~pq~~---lL~~~~~~~~Ith-gG~-~s~~eal~~GvP~v~~P~~ 379 (471)
+ .+.+. ..+++.+.+++|+.+ +|..+++-++.+. .|. .++.||+++|+|+|+..
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~-- 331 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD-- 331 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC--
Confidence 1 00111 135788899998754 6778888333333 333 48999999999999863
Q ss_pred ccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 380 MDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 380 ~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.......+++. ..|..++. -+++++.++|.++++|
T Consensus 332 --~~g~~e~i~~~-~~G~lv~~--------~d~~~la~~i~~ll~~ 366 (396)
T cd03818 332 --TAPVREVITDG-ENGLLVDF--------FDPDALAAAVIELLDD 366 (396)
T ss_pred --CCCchhhcccC-CceEEcCC--------CCHHHHHHHHHHHHhC
Confidence 34555666543 46877765 3799999999999987
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.18 E-value=5.2e-08 Score=99.06 Aligned_cols=123 Identities=15% Similarity=0.116 Sum_probs=80.6
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCC--Ccccccc-CCCceEeeccchHH---hhhhcccceeecc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSG-VRFFWVSRGDT--SWFKDGC-VDRGIVVPWCDQLE---VLCHSSIGGFWTH 357 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~-~~vi~~~~~~~--~~~~~~~-~~nv~v~~~~pq~~---lL~~~~~~~~Ith 357 (471)
.+++..|+... ...+..+++++++.+ .++++ +|..+ +.+.... ..|+.+.+|+++.+ ++..+++ ||.-
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~i-vG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv--~V~p 338 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARLAF-VGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDV--FVMP 338 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEE-EeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCE--EEEC
Confidence 45566677653 334556777877764 55554 44332 1121111 24788889997543 7888888 7754
Q ss_pred CC----cchHHHHHHcCCceecccccccccchhhhhhh---hhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 358 CG----LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVE---DWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 358 gG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.. ..++.||+++|+|+|+.... .....+++ . +.|..++. -+.+++.++|.++++|
T Consensus 339 S~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~--------~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 339 SESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP--------GDVDDCVEKLETLLAD 400 (465)
T ss_pred CcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC--------CCHHHHHHHHHHHHhC
Confidence 32 34789999999999986543 23334443 4 77888875 2789999999999987
No 49
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=1.3e-09 Score=97.32 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=102.1
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCC---Ccccccc--CCCceEeeccc-hHHhhhhcccceeeccC
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDT---SWFKDGC--VDRGIVVPWCD-QLEVLCHSSIGGFWTHC 358 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~---~~~~~~~--~~nv~v~~~~p-q~~lL~~~~~~~~Ithg 358 (471)
-|+|++|... +.+..-.++..+.+.++.+-.+++... ..++++. -+|+.+..... ...++..+++ .|+-|
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~Aa 235 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAA 235 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heecc
Confidence 6999998765 234566688888888877777777432 2222221 24666666655 5569999999 99988
Q ss_pred CcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 012096 359 GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAR 438 (471)
Q Consensus 359 G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~ 438 (471)
|. |+.|++..|+|.+++|+...|---|+..+ .+|+-.-+.. . ++...+..-+.++.+| ...|++..
T Consensus 236 Gs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~-~lg~~~~l~~------~-l~~~~~~~~~~~i~~d-----~~~rk~l~ 301 (318)
T COG3980 236 GS-TLYEALLLGVPSLVLPLAENQIATAKEFE-ALGIIKQLGY------H-LKDLAKDYEILQIQKD-----YARRKNLS 301 (318)
T ss_pred ch-HHHHHHHhcCCceEEeeeccHHHHHHHHH-hcCchhhccC------C-CchHHHHHHHHHhhhC-----HHHhhhhh
Confidence 86 89999999999999999999999999998 4366555554 2 5777777777788887 67776665
Q ss_pred HHHHHH
Q 012096 439 EVQEIC 444 (471)
Q Consensus 439 ~l~~~~ 444 (471)
.-++..
T Consensus 302 ~~~~~i 307 (318)
T COG3980 302 FGSKLI 307 (318)
T ss_pred hcccee
Confidence 554443
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.17 E-value=7.9e-08 Score=93.33 Aligned_cols=307 Identities=12% Similarity=0.095 Sum_probs=161.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh-hcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF-IGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
||++++....|+......++++|.+ .||+|++++....... .... ++.+..++.... .......+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~--~g~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~~~ 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRA--AGYEVHVVAPPGDELEELEAL-----GVKVIPIPLDRR-----GINPFKDLKA 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHh--cCCeeEEEecCCCcccccccC-----CceEEecccccc-----ccChHhHHHH
Confidence 5778888778899999999999999 9999999998755442 2222 677776663321 0011111111
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCccc
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSE 170 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (471)
. ..+...+++ .+||+|++.... ..+..+++..+.|.++..........
T Consensus 69 ~-----~~~~~~~~~-----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------- 118 (359)
T cd03808 69 L-----LRLYRLLRK-----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF-------------------- 118 (359)
T ss_pred H-----HHHHHHHHh-----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh--------------------
Confidence 1 112333333 269999987654 23334455466665554332211000
Q ss_pred CCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCC----CCccccc
Q 012096 171 RGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFP----FPVYPIG 246 (471)
Q Consensus 171 ~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~----~~~~~vG 246 (471)
.... . ....+..... ......+.++..+....+.- ..... ..+..++
T Consensus 119 ----------~~~~--------~----~~~~~~~~~~--~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~~~~~~ 169 (359)
T cd03808 119 ----------TSGG--------L----KRRLYLLLER--LALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKTVLIPG 169 (359)
T ss_pred ----------ccch--------h----HHHHHHHHHH--HHHhhccEEEEcCHHHHHHH-----HHhcCCCcCceEEecC
Confidence 0000 0 0011111111 12344577777765443321 11111 1222222
Q ss_pred cCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcC-CCHHHHHHHHHHHHh--CCCcEEEEEcCCC
Q 012096 247 PTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWS-VSSVQMDEIVAGVRN--SGVRFFWVSRGDT 323 (471)
Q Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~-~~~~~~~~~~~al~~--~~~~vi~~~~~~~ 323 (471)
......... ..... .++++.+++..|+... ...+.+..++..+.+ .+.++++.-.+..
T Consensus 170 ~~~~~~~~~------------~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~ 230 (359)
T cd03808 170 SGVDLDRFS------------PSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE 230 (359)
T ss_pred CCCChhhcC------------ccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc
Confidence 222111100 00000 1223467777887764 233444444444443 2355555443332
Q ss_pred Ccccc-------ccCCCceEeeccch-HHhhhhcccceeeccCC----cchHHHHHHcCCceecccccccccchhhhhhh
Q 012096 324 SWFKD-------GCVDRGIVVPWCDQ-LEVLCHSSIGGFWTHCG----LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVE 391 (471)
Q Consensus 324 ~~~~~-------~~~~nv~v~~~~pq-~~lL~~~~~~~~IthgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~ 391 (471)
..... ....++.+.++..+ ..++..+++ +|.... .+++.||+++|+|+|+.+.. .+...+++
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~ 304 (359)
T cd03808 231 ENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVID 304 (359)
T ss_pred chhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhhhc
Confidence 11111 12357888887554 448889988 665432 47899999999999986543 34455554
Q ss_pred hhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 392 DWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 392 ~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
. +.|...+. -+.+++.++|.+++.|
T Consensus 305 ~-~~g~~~~~--------~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 305 G-VNGFLVPP--------GDAEALADAIERLIED 329 (359)
T ss_pred C-cceEEECC--------CCHHHHHHHHHHHHhC
Confidence 4 67877765 2789999999999887
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.16 E-value=3.9e-08 Score=96.71 Aligned_cols=333 Identities=13% Similarity=0.012 Sum_probs=165.1
Q ss_pred EEEEEcCCC----ccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCC----CCCCCeEEEecCCCCCCchhhhhc
Q 012096 14 HIVALPYPG----RGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGH----GNHNNIRFETIPNVIPSELVRARD 85 (471)
Q Consensus 14 ~il~~~~~~----~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~----~~~~~~~~~~ip~~~~~~~~~~~~ 85 (471)
||++++... .|+-.....+++.|++ +||+|++++............ ....++.+..++....... ..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~--~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 75 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVK--RGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKN---GL 75 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHh--CCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCcc---ch
Confidence 466666532 4899999999999999 999999999764333222100 0112566666553322111 11
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch----hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhc
Q 012096 86 FLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL----AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQN 161 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~----~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (471)
+....... .........+... . .+||+|++.... ..+..++...++|++...........
T Consensus 76 ~~~~~~~~-~~~~~~~~~~~~~--~--~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------- 139 (394)
T cd03794 76 LKRLLNYL-SFALSALLALLKR--R--RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESA----------- 139 (394)
T ss_pred HHHHHhhh-HHHHHHHHHHHhc--c--cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhH-----------
Confidence 11111111 1111111112211 1 379999998622 23344566679999885332111000
Q ss_pred CCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCC
Q 012096 162 GHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFP 241 (471)
Q Consensus 162 ~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~ 241 (471)
....... .... .......... ......+.++..+-...+.-. . ......+
T Consensus 140 ---------------~~~~~~~------~~~~----~~~~~~~~~~--~~~~~~d~vi~~s~~~~~~~~--~-~~~~~~~ 189 (394)
T cd03794 140 ---------------VALGLLK------NGSL----LYRLLRKLER--LIYRRADAIVVISPGMREYLV--R-RGVPPEK 189 (394)
T ss_pred ---------------HHccCcc------ccch----HHHHHHHHHH--HHHhcCCEEEEECHHHHHHHH--h-cCCCcCc
Confidence 0000000 0000 0011111111 234566777777654433210 0 1101234
Q ss_pred ccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcC-CCHHHHHHHHHHHHhC-CCcEEEEE
Q 012096 242 VYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWS-VSSVQMDEIVAGVRNS-GVRFFWVS 319 (471)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~-~~~~~~~~~~~al~~~-~~~vi~~~ 319 (471)
+..+............ .......... ...++.+++..|+... ...+.+..++..+.+. +.++++ +
T Consensus 190 ~~~i~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~ 256 (394)
T cd03794 190 ISVIPNGVDLELFKPP----------PADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-V 256 (394)
T ss_pred eEEcCCCCCHHHcCCc----------cchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-e
Confidence 4445444332211100 0000011111 1123367777787764 2334444444444433 455554 3
Q ss_pred cCCC--Cccc----cccCCCceEeeccchHH---hhhhcccceeeccCC---------cchHHHHHHcCCceeccccccc
Q 012096 320 RGDT--SWFK----DGCVDRGIVVPWCDQLE---VLCHSSIGGFWTHCG---------LNSTLEAAYAGVPMLTFPIMMD 381 (471)
Q Consensus 320 ~~~~--~~~~----~~~~~nv~v~~~~pq~~---lL~~~~~~~~IthgG---------~~s~~eal~~GvP~v~~P~~~D 381 (471)
|... ..+. ....+|+.+.+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.
T Consensus 257 G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~ 334 (394)
T cd03794 257 GDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGES 334 (394)
T ss_pred CCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCc
Confidence 3322 1111 12236899999998554 6788888 664322 2347999999999999877654
Q ss_pred ccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 382 QVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 382 Q~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.. +.+. +.|..++. -+.+++.++|.++++|
T Consensus 335 ~~~----~~~~-~~g~~~~~--------~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 335 AEL----VEEA-GAGLVVPP--------GDPEALAAAILELLDD 365 (394)
T ss_pred hhh----hccC-CcceEeCC--------CCHHHHHHHHHHHHhC
Confidence 333 3323 56777765 3889999999999977
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.16 E-value=6.6e-08 Score=94.61 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=85.5
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHh--CCCcEEEEEcCCC-Ccccc-----ccCCCceEeeccchHH---hhhhcccc
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRN--SGVRFFWVSRGDT-SWFKD-----GCVDRGIVVPWCDQLE---VLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~--~~~~vi~~~~~~~-~~~~~-----~~~~nv~v~~~~pq~~---lL~~~~~~ 352 (471)
.+++..|+... ...+.+..++..+.+ .+.++++.-.+.. +.+.. ...+|+.+.+++|+.+ ++..+++
T Consensus 203 ~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~- 281 (374)
T cd03817 203 PVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADL- 281 (374)
T ss_pred eEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCE-
Confidence 56666777664 233444444444433 3355555433322 11111 2346899999998654 6888888
Q ss_pred eeecc----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCch
Q 012096 353 GFWTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNND 428 (471)
Q Consensus 353 ~~Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 428 (471)
+|.. +...++.||+++|+|+|+... ...+..+++. +.|..++. + +. ++.++|.++++++.
T Consensus 282 -~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~-------~~-~~~~~i~~l~~~~~- 345 (374)
T cd03817 282 -FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G-------DE-ALAEALLRLLQDPE- 345 (374)
T ss_pred -EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C-------CH-HHHHHHHHHHhChH-
Confidence 6633 334689999999999998653 4455666654 67888876 1 22 99999999998731
Q ss_pred hHHHHHHHHHHHHHH
Q 012096 429 ERKAMSKRAREVQEI 443 (471)
Q Consensus 429 ~~~~~~~~a~~l~~~ 443 (471)
....+++++++....
T Consensus 346 ~~~~~~~~~~~~~~~ 360 (374)
T cd03817 346 LRRRLSKNAEESAEK 360 (374)
T ss_pred HHHHHHHHHHHHHHH
Confidence 112344444444433
No 53
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.15 E-value=1.1e-07 Score=94.60 Aligned_cols=322 Identities=12% Similarity=0.130 Sum_probs=162.5
Q ss_pred ccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHH
Q 012096 23 RGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFE 102 (471)
Q Consensus 23 ~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (471)
.|+-..+..|+++|++ +||+|++++........... ...+++.+..++..... ..........+..+... +.
T Consensus 21 GG~~~~~~~l~~~L~~--~g~~V~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~ 92 (398)
T cd03800 21 GGQNVYVLELARALAR--LGHEVDIFTRRIDDALPPIV-ELAPGVRVVRVPAGPAE-YLPKEELWPYLDEFADD----LL 92 (398)
T ss_pred CceeehHHHHHHHHhc--cCceEEEEEecCCcccCCcc-ccccceEEEeccccccc-CCChhhcchhHHHHHHH----HH
Confidence 4788899999999999 99999999965432221100 11236777666532110 00000111111111111 12
Q ss_pred HHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccCCccccccCC
Q 012096 103 KVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSERGEEVVDYIP 180 (471)
Q Consensus 103 ~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ip 180 (471)
..++... .+||+|++.... ..+..+++.+++|+|........ ....
T Consensus 93 ~~~~~~~---~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-----------------------------~~~~ 140 (398)
T cd03800 93 RFLRREG---GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGA-----------------------------VKRR 140 (398)
T ss_pred HHHHhcC---CCccEEEEecCccchHHHHHHhhcCCceEEEeecccc-----------------------------cCCc
Confidence 2222211 269999987543 44566788999998874221100 0000
Q ss_pred CCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCCCccccccCCCCccccccccc
Q 012096 181 GLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPFPVYPIGPTIPYFEIKSNLLT 260 (471)
Q Consensus 181 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~~~~~~~~~~~~ 260 (471)
.... ... . ...............++.++..+....+.-. ..... ...++..+.+..........
T Consensus 141 ~~~~--~~~----~-----~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~-~~~~~-~~~~~~vi~ng~~~~~~~~~--- 204 (398)
T cd03800 141 HLGA--ADT----Y-----EPARRIEAEERLLRAADRVIASTPQEAEELY-SLYGA-YPRRIRVVPPGVDLERFTPY--- 204 (398)
T ss_pred cccc--ccc----c-----chhhhhhHHHHHHhhCCEEEEcCHHHHHHHH-HHccc-cccccEEECCCCCccceecc---
Confidence 0000 000 0 0000011111234567888877755433211 11000 11224444433322111000
Q ss_pred ccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCCcc---------
Q 012096 261 STSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDTSWF--------- 326 (471)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~~~~--------- 326 (471)
.......+.+...++ ..+++..|+.... ..+..+++++..+ +.++++.-++.....
T Consensus 205 -------~~~~~~~~~~~~~~~-~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 274 (398)
T cd03800 205 -------GRAEARRARLLRDPD-KPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRE 274 (398)
T ss_pred -------cchhhHHHhhccCCC-CcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHH
Confidence 000010111112222 2566777877642 2233444444432 356666544332110
Q ss_pred -cc--ccCCCceEeeccchHH---hhhhcccceeecc---CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcce
Q 012096 327 -KD--GCVDRGIVVPWCDQLE---VLCHSSIGGFWTH---CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIG 396 (471)
Q Consensus 327 -~~--~~~~nv~v~~~~pq~~---lL~~~~~~~~Ith---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G 396 (471)
.. ...+|+.+.+|+|+.+ ++..+++ ++.. .| -.++.||+++|+|+|+.... .....+++. +.|
T Consensus 275 ~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g 347 (398)
T cd03800 275 LARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTG 347 (398)
T ss_pred HHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCe
Confidence 01 1236789999999755 5888888 7743 22 35899999999999876543 355566655 688
Q ss_pred eeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 397 WKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
...+. -+.+++.++|.+++++
T Consensus 348 ~~~~~--------~~~~~l~~~i~~l~~~ 368 (398)
T cd03800 348 LLVDP--------RDPEALAAALRRLLTD 368 (398)
T ss_pred EEeCC--------CCHHHHHHHHHHHHhC
Confidence 88875 3799999999999987
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.11 E-value=1.8e-07 Score=91.02 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=62.1
Q ss_pred cCCCceEeeccchH---Hhhhhcccceeec----cCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecC
Q 012096 330 CVDRGIVVPWCDQL---EVLCHSSIGGFWT----HCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKP 402 (471)
Q Consensus 330 ~~~nv~v~~~~pq~---~lL~~~~~~~~It----hgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 402 (471)
.+.++.+.+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+++. +.|...+.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-
Confidence 45689999999743 37888888 663 2455799999999999998665 4455666644 77887776
Q ss_pred CCCCCCccCHHHHHHHHHHHhcC
Q 012096 403 EIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 403 ~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+.+++.++|.+++++
T Consensus 326 -------~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 326 -------GDPEALAEAILRLLDD 341 (374)
T ss_pred -------CCHHHHHHHHHHHHcC
Confidence 3689999999999987
No 55
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.07 E-value=3.2e-07 Score=89.97 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=58.8
Q ss_pred cCCCceEeeccc-hH---HhhhhcccceeeccC----CcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeec
Q 012096 330 CVDRGIVVPWCD-QL---EVLCHSSIGGFWTHC----GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 330 ~~~nv~v~~~~p-q~---~lL~~~~~~~~Ithg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
...++...+|++ +. .++..+++ +|.-. ..+++.||+++|+|+|+... ......+.+. +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 445788889998 43 36888888 77643 34799999999999997654 2333344433 46777765
Q ss_pred CCCCCCCccCHHHHHHHHHHHhcC
Q 012096 402 PEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+.+++.++|.+++++
T Consensus 315 --------~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 315 --------GDPEDLAEGIEWLLAD 330 (365)
T ss_pred --------CCHHHHHHHHHHHHhC
Confidence 3789999999999987
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=3.1e-07 Score=90.43 Aligned_cols=124 Identities=16% Similarity=0.211 Sum_probs=77.9
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHH----hCCCcEEEEEcCCC-Cccc---c--ccCCCceEeeccch-HHhhhhcccce
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVR----NSGVRFFWVSRGDT-SWFK---D--GCVDRGIVVPWCDQ-LEVLCHSSIGG 353 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~----~~~~~vi~~~~~~~-~~~~---~--~~~~nv~v~~~~pq-~~lL~~~~~~~ 353 (471)
.+++..|.... ...+..+++++. +.+.++++.-.+.. +.+. . ...+++.+.++.++ ..++..+++
T Consensus 198 ~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~-- 273 (371)
T cd04962 198 KVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADL-- 273 (371)
T ss_pred eEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCE--
Confidence 56666776653 222333344443 23566665533322 1111 1 12457888888775 448888888
Q ss_pred eecc----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 354 FWTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 354 ~Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+|.- |.-.++.||+++|+|+|+.. ....+..+++. ..|...+. -+.+++.++|.+++++
T Consensus 274 ~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~~-~~G~~~~~--------~~~~~l~~~i~~l~~~ 336 (371)
T cd04962 274 FLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKHG-ETGFLVDV--------GDVEAMAEYALSLLED 336 (371)
T ss_pred EEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcCC-CceEEcCC--------CCHHHHHHHHHHHHhC
Confidence 6622 33459999999999999854 34456666644 56777665 3789999999999986
No 57
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.02 E-value=1.1e-06 Score=87.38 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=58.0
Q ss_pred CCCceEeeccchH---Hhhhhcccceeecc---CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCC
Q 012096 331 VDRGIVVPWCDQL---EVLCHSSIGGFWTH---CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE 403 (471)
Q Consensus 331 ~~nv~v~~~~pq~---~lL~~~~~~~~Ith---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 403 (471)
.+++.+.+++|+. .+|..+++ ++.. -| ..++.||+++|+|+|+.-. ......+.+. +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhccC-CceEEeCC--
Confidence 4689999999865 46888888 6532 22 2578999999999998643 3344445533 56776654
Q ss_pred CCCCCccCHHHHHHHHHHHhcC
Q 012096 404 IGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.+++.++|.+++++
T Consensus 350 -------~~~~~a~~i~~l~~~ 364 (392)
T cd03805 350 -------TPEEFAEAMLKLAND 364 (392)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 789999999999987
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.00 E-value=2.6e-06 Score=85.34 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=82.4
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhC----CCcEEEEEcCCC--Ccccc---c-cCCCceEeeccchHH---hhhhccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNS----GVRFFWVSRGDT--SWFKD---G-CVDRGIVVPWCDQLE---VLCHSSI 351 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~----~~~vi~~~~~~~--~~~~~---~-~~~nv~v~~~~pq~~---lL~~~~~ 351 (471)
.+++..|+... ...+..++++++.+ +.+++. +|... +.+.. . ..+|+.+.+|+|+.+ ++..+++
T Consensus 230 ~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi 306 (412)
T PRK10307 230 KIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVI-CGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADC 306 (412)
T ss_pred EEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEE-ECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCE
Confidence 56666787763 23344555555543 244443 44322 11111 1 124788999998643 7888888
Q ss_pred ceeeccCCc------chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 352 GGFWTHCGL------NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 352 ~~~IthgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.++.+..+. +.+.|++++|+|+|+....+. .....++ +.|+.++. -+.++++++|.++++|
T Consensus 307 ~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i~---~~G~~~~~--------~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 307 HLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLVE---GIGVCVEP--------ESVEALVAAIAALARQ 373 (412)
T ss_pred eEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHHh---CCcEEeCC--------CCHHHHHHHHHHHHhC
Confidence 555555332 236899999999999865431 1122333 67887775 3889999999999976
Q ss_pred CchhHHHHHHHHHHH
Q 012096 426 NNDERKAMSKRAREV 440 (471)
Q Consensus 426 ~~~~~~~~~~~a~~l 440 (471)
+ .....+++++++.
T Consensus 374 ~-~~~~~~~~~a~~~ 387 (412)
T PRK10307 374 A-LLRPKLGTVAREY 387 (412)
T ss_pred H-HHHHHHHHHHHHH
Confidence 2 1223445555443
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.99 E-value=1.2e-06 Score=87.50 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=59.5
Q ss_pred CCCceEeeccchH---Hhhhhcccceeec---cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCC
Q 012096 331 VDRGIVVPWCDQL---EVLCHSSIGGFWT---HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE 403 (471)
Q Consensus 331 ~~nv~v~~~~pq~---~lL~~~~~~~~It---hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 403 (471)
.+++.+.+++++. ++|..+++ +|. +.|. .++.||+++|+|+|+... ......+++. +.|+.++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVADG-ETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhccC-CceEECCC--
Confidence 3579999999854 47888988 663 2343 589999999999998654 3344455544 56877764
Q ss_pred CCCCCccCHHHHHHHHHHHhcC
Q 012096 404 IGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
-+.+++.++|.+++++
T Consensus 353 ------~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 353 ------HDPADWADALARLLDD 368 (405)
T ss_pred ------CCHHHHHHHHHHHHhC
Confidence 2889999999999987
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.99 E-value=8.2e-07 Score=88.88 Aligned_cols=93 Identities=14% Similarity=0.246 Sum_probs=62.5
Q ss_pred CCceEe-eccchHH---hhhhcccceeec----cCC---cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeee
Q 012096 332 DRGIVV-PWCDQLE---VLCHSSIGGFWT----HCG---LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVK 400 (471)
Q Consensus 332 ~nv~v~-~~~pq~~---lL~~~~~~~~It----hgG---~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 400 (471)
+|+.+. +|+|..+ +|..+++ +|. .-| -.++.||+++|+|+|+... ......+++. +.|+.+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEE-
Confidence 355544 6887444 6888888 663 112 3479999999999998543 3555666654 678776
Q ss_pred cCCCCCCCccCHHHHHHHHHHHhcCC--chhHHHHHHHHHHHH
Q 012096 401 KPEIGSESLVTRDEITELVKRFMDLN--NDERKAMSKRAREVQ 441 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~a~~l~ 441 (471)
. +.++|+++|.++++|. ..+...|++++++.+
T Consensus 366 ~---------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 G---------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred C---------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 3 7899999999999871 223355666655544
No 61
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.99 E-value=7.4e-07 Score=86.05 Aligned_cols=126 Identities=22% Similarity=0.221 Sum_probs=75.2
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEcCCCCc-cc---c--ccCCCceEeeccc-hHHhhhhccccee
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS--GVRFFWVSRGDTSW-FK---D--GCVDRGIVVPWCD-QLEVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~--~~~vi~~~~~~~~~-~~---~--~~~~nv~v~~~~p-q~~lL~~~~~~~~ 354 (471)
.+++..|.... ...+.+..++..+.+. +.++++.-.+.... +. . ....++.+.++.. -..++..+++ +
T Consensus 179 ~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~ 256 (348)
T cd03820 179 KRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI--F 256 (348)
T ss_pred cEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE--E
Confidence 45566666554 2233344444444322 34555443322211 11 1 1235677777744 3458888888 6
Q ss_pred eccC----CcchHHHHHHcCCceecccccccccchhhhhhhhhc-ceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 355 WTHC----GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWK-IGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 355 Ithg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
|.-. .-+++.||+++|+|+|+.+..+.+ ..+... | .|...+. .+.+++.++|.++++|
T Consensus 257 i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~--------~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 257 VLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN--------GDVEALAEALLRLMED 319 (348)
T ss_pred EeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC--------CCHHHHHHHHHHHHcC
Confidence 6553 246899999999999987544333 223334 4 7877765 3789999999999987
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.96 E-value=4.6e-08 Score=96.27 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=93.7
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCC---cccc--ccCCCceEeeccch---HHhhhhcc
Q 012096 284 SVLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDTS---WFKD--GCVDRGIVVPWCDQ---LEVLCHSS 350 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~~---~~~~--~~~~nv~v~~~~pq---~~lL~~~~ 350 (471)
.+|+++++-.... ...+..+++++.++ +.++++..+++.. .+.. ...+++++.+.+++ ..++..++
T Consensus 198 ~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad 276 (365)
T TIGR00236 198 RYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSH 276 (365)
T ss_pred CEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCC
Confidence 3676665432221 13466677777654 4566665443321 1111 12357888876654 45677788
Q ss_pred cceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhH
Q 012096 351 IGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDER 430 (471)
Q Consensus 351 ~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 430 (471)
+ +|+..|. .+.||+++|+|+|.++-.++++. .++ . |.++.+.. ++++|.++|.+++++
T Consensus 277 ~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~~-~-g~~~lv~~---------d~~~i~~ai~~ll~~----- 334 (365)
T TIGR00236 277 L--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TVE-A-GTNKLVGT---------DKENITKAAKRLLTD----- 334 (365)
T ss_pred E--EEECChh-HHHHHHHcCCCEEECCCCCCChH---HHh-c-CceEEeCC---------CHHHHHHHHHHHHhC-----
Confidence 7 9987764 47999999999999876555543 222 4 77766644 889999999999987
Q ss_pred HHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHH
Q 012096 431 KAMSKRAREVQEICQEAVAENGSSITNFDAFLN 463 (471)
Q Consensus 431 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (471)
+.++++..+-... ...|+++.+.++.+.+
T Consensus 335 ~~~~~~~~~~~~~----~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 335 PDEYKKMSNASNP----YGDGEASERIVEELLN 363 (365)
T ss_pred hHHHHHhhhcCCC----CcCchHHHHHHHHHHh
Confidence 6665544332222 2345666666555543
No 63
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.96 E-value=7.3e-09 Score=101.86 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=83.4
Q ss_pred CCeEEEEEeCCCcCC-CHHHHHHHHHHHHhCCC-cEEEEEcCCC---Ccccc---cc---CCCceEeeccchH---Hhhh
Q 012096 282 DSSVLYVSLGSLWSV-SSVQMDEIVAGVRNSGV-RFFWVSRGDT---SWFKD---GC---VDRGIVVPWCDQL---EVLC 347 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~-~~~~~~~~~~al~~~~~-~vi~~~~~~~---~~~~~---~~---~~nv~v~~~~pq~---~lL~ 347 (471)
+++.|++++|..... ..+.+..++++++++.. ++++...++. ..+.+ .. .+|+.+.+..++. .++.
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 276 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLK 276 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHH
Confidence 344788888877654 35567778888877643 2444443332 12211 11 3577777665533 4677
Q ss_pred hcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+++ ||+..| |.+.||+++|+|+|+++.. |. +..+.+. |+++.+.. +.++|.++|.+++++
T Consensus 277 ~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~---------~~~~i~~~i~~ll~~ 337 (363)
T cd03786 277 NADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT---------DPEAILAAIEKLLSD 337 (363)
T ss_pred cCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC---------CHHHHHHHHHHHhcC
Confidence 7888 999998 7788999999999998643 21 3334434 66655543 688999999999987
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.96 E-value=2e-06 Score=84.09 Aligned_cols=80 Identities=24% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCCceEeeccchHH---hhhhcccceeecc-CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCC
Q 012096 331 VDRGIVVPWCDQLE---VLCHSSIGGFWTH-CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIG 405 (471)
Q Consensus 331 ~~nv~v~~~~pq~~---lL~~~~~~~~Ith-gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 405 (471)
.+++.+.+|+++.+ ++..+++-++-++ .| ..++.||+++|+|+|+.+. ......+. . +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~-~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIE-Y-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhh-c-CceEEeCC----
Confidence 46889999999544 6788888322232 23 3689999999999998653 34455555 4 67777665
Q ss_pred CCCccCHHHHHHHHHHHhcC
Q 012096 406 SESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.+++.++|.+++++
T Consensus 331 -----~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 -----DVDALAAALRRALEL 345 (375)
T ss_pred -----ChHHHHHHHHHHHhC
Confidence 569999999999987
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.94 E-value=2.4e-06 Score=83.33 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=78.4
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEcCCC-Ccccc-----ccCCCceEeeccchH---Hhhhhcccc
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS--GVRFFWVSRGDT-SWFKD-----GCVDRGIVVPWCDQL---EVLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~--~~~vi~~~~~~~-~~~~~-----~~~~nv~v~~~~pq~---~lL~~~~~~ 352 (471)
.+++..|+... ...+.+-.++..+.+. +..+++.-.+.. ..+.. ...+|+.+.+++++. .++..+++-
T Consensus 203 ~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~ 282 (377)
T cd03798 203 KVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVF 282 (377)
T ss_pred eEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCee
Confidence 66677777664 2233333333444333 234433322221 11111 134689999999864 467888882
Q ss_pred eeec--cCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 353 GFWT--HCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 353 ~~It--hgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
++.+ -|..+++.||+++|+|+|+.+. ......+++. +.|...+. -+.+++.++|.+++++
T Consensus 283 i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~--------~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 283 VLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP--------GDPEALAEAILRLLAD 344 (377)
T ss_pred ecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC--------CCHHHHHHHHHHHhcC
Confidence 2222 2455789999999999997654 3445556644 66777765 3899999999999987
No 66
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.89 E-value=9.6e-07 Score=88.82 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=57.1
Q ss_pred CceEeeccch-HHhhhhcccceeecc-----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCC
Q 012096 333 RGIVVPWCDQ-LEVLCHSSIGGFWTH-----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGS 406 (471)
Q Consensus 333 nv~v~~~~pq-~~lL~~~~~~~~Ith-----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 406 (471)
++.+.+...+ ..++..+++ ++.. +|..++.||+++|+|+|+-|...++......+.+. |+++. ..
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~-~~----- 373 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQ-VE----- 373 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEE-EC-----
Confidence 3444444433 447888887 4432 34446999999999999999888888877776544 54433 22
Q ss_pred CCccCHHHHHHHHHHHhcC
Q 012096 407 ESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~ 425 (471)
+.++|.++|.++++|
T Consensus 374 ----d~~~La~~l~~ll~~ 388 (425)
T PRK05749 374 ----DAEDLAKAVTYLLTD 388 (425)
T ss_pred ----CHHHHHHHHHHHhcC
Confidence 789999999999987
No 67
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.88 E-value=2.5e-06 Score=83.38 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCCceEee-ccch---HHhhhhcccceeec--c----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeee
Q 012096 331 VDRGIVVP-WCDQ---LEVLCHSSIGGFWT--H----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVK 400 (471)
Q Consensus 331 ~~nv~v~~-~~pq---~~lL~~~~~~~~It--h----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 400 (471)
.+|+.+.+ |+|+ ..++..+++ +|. + |..+++.||+++|+|+|+.+..+ ...+.+. +.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 45777774 4875 347888888 552 2 33468999999999999977654 2334434 6787776
Q ss_pred cCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 401 KPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
. -+.+++.++|.+++++
T Consensus 318 ~--------~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 318 P--------GDPAALAEAIRRLLAD 334 (366)
T ss_pred C--------CCHHHHHHHHHHHHcC
Confidence 5 2789999999999987
No 68
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.88 E-value=5.2e-06 Score=82.73 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=73.3
Q ss_pred eEEEEEeCCCcC-CCHHHHHHHHHHHHh-C-CCcEEEEEcCCC--Cccc---c--ccCCCceEeeccchHH---hhhhcc
Q 012096 284 SVLYVSLGSLWS-VSSVQMDEIVAGVRN-S-GVRFFWVSRGDT--SWFK---D--GCVDRGIVVPWCDQLE---VLCHSS 350 (471)
Q Consensus 284 ~~I~vs~GS~~~-~~~~~~~~~~~al~~-~-~~~vi~~~~~~~--~~~~---~--~~~~nv~v~~~~pq~~---lL~~~~ 350 (471)
..+++..|.... ...+.+...+..+.+ . +.++++. |..+ +.+. . ...+++.+.+|+|+.+ ++..++
T Consensus 193 ~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad 271 (398)
T cd03796 193 KITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIG-GDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGH 271 (398)
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEE-eCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 367777777654 223333333333332 2 3444443 3322 1111 1 1345788899998543 778888
Q ss_pred cceeec---cCCcc-hHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 351 IGGFWT---HCGLN-STLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 351 ~~~~It---hgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+ +|. +-|.| ++.||+++|+|+|+.+..+ ....+. . |.+..... +.+++.++|.+++++
T Consensus 272 ~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~-~-~~~~~~~~---------~~~~l~~~l~~~l~~ 333 (398)
T cd03796 272 I--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLP-P-DMILLAEP---------DVESIVRKLEEAISI 333 (398)
T ss_pred E--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhee-C-CceeecCC---------CHHHHHHHHHHHHhC
Confidence 8 653 23443 9999999999999876642 233443 3 44433333 789999999999875
No 69
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.87 E-value=9.1e-06 Score=87.38 Aligned_cols=352 Identities=11% Similarity=0.064 Sum_probs=177.2
Q ss_pred cChHHHHHHHHHHHhcCCC--cEEEEEECccchh--------hhcCCC-----------CCCCCeEEEecCCCCCCchhh
Q 012096 24 GHINPMMNLCKLLVSRNPN--VFITFVVTEEWLS--------FIGSGH-----------GNHNNIRFETIPNVIPSELVR 82 (471)
Q Consensus 24 GH~~p~l~La~~L~~~~rG--h~Vt~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~ip~~~~~~~~~ 82 (471)
|+..-.+.||++|++ +| |+|.++|-..... .++... ...++++.+.+|-+.......
T Consensus 196 Gq~vYV~ELAraLa~--~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~ 273 (1050)
T TIGR02468 196 GQVKYVVELARALGS--MPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRDKYIP 273 (1050)
T ss_pred ChHHHHHHHHHHHHh--CCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCCCCcC
Confidence 577778999999999 98 8999999543211 111000 012378888888665432333
Q ss_pred hhcHHHHHHHHHHhchHHHHH----HHHHhhh-cCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhh
Q 012096 83 ARDFLAFVESVSTKMEAPFEK----VLDFLQV-EAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHF 155 (471)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~----ll~~l~~-~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 155 (471)
...+..++..+.+.+...+.+ +.+++.. ....||+|-+.+.. ..+..+++.+|||+|....+....- .
T Consensus 274 Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K-----~ 348 (1050)
T TIGR02468 274 KEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRDK-----L 348 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECccchhhh-----h
Confidence 344566666666555444333 2333321 11249999988644 6777889999999888644421100 0
Q ss_pred HHHHhcCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHH--
Q 012096 156 ELLVQNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDT-- 233 (471)
Q Consensus 156 ~~~~~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~-- 233 (471)
..+.. .+.. ........+ .+..+.......+..++.++..|..+.+.-+--|
T Consensus 349 ~~ll~-------------------~g~~--~~~~~~~~y-----~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~ 402 (1050)
T TIGR02468 349 EQLLK-------------------QGRM--SKEEINSTY-----KIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDG 402 (1050)
T ss_pred hhhcc-------------------cccc--ccccccccc-----chHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhcc
Confidence 00000 0000 000000000 0111111222346678888888877765321111
Q ss_pred HHhc------------------CCCCccccccCCCCccc-ccccc-cccc-----cC---CCCCCchhccccccCCCCeE
Q 012096 234 LKAK------------------FPFPVYPIGPTIPYFEI-KSNLL-TSTS-----LN---INNEPDNYFHWLDSQPDSSV 285 (471)
Q Consensus 234 ~~~~------------------~~~~~~~vGp~~~~~~~-~~~~~-~~~~-----~~---~~~~~~~~~~~l~~~~~~~~ 285 (471)
+.+. +.+++..|.|=+....- +.... .... .+ ..+....+..|+.. +++ .
T Consensus 403 ~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~-pdk-p 480 (1050)
T TIGR02468 403 FDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTN-PRK-P 480 (1050)
T ss_pred CCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhccc-CCC-c
Confidence 0000 11232222222111100 00000 0000 00 00111234455543 344 3
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHhCC-----CcEEEEEcCCCC--c-----------cc---c--ccCCCceEeeccch
Q 012096 286 LYVSLGSLWSVSSVQMDEIVAGVRNSG-----VRFFWVSRGDTS--W-----------FK---D--GCVDRGIVVPWCDQ 342 (471)
Q Consensus 286 I~vs~GS~~~~~~~~~~~~~~al~~~~-----~~vi~~~~~~~~--~-----------~~---~--~~~~nv~v~~~~pq 342 (471)
++++.|.... .+.+..+++|+..+. ..+.+.+|..+. . +. . .+.++|.+.+++++
T Consensus 481 vIL~VGRL~p--~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~ 558 (1050)
T TIGR02468 481 MILALARPDP--KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQ 558 (1050)
T ss_pred EEEEEcCCcc--ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCH
Confidence 4455566553 233555666665542 244444553210 0 00 0 13457888888876
Q ss_pred HH---hhhhcc--cceeecc---CCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHH
Q 012096 343 LE---VLCHSS--IGGFWTH---CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRD 413 (471)
Q Consensus 343 ~~---lL~~~~--~~~~Ith---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~ 413 (471)
.+ ++..++ ..+||.- =|+ .++.||+++|+|+|+....+ ....++.. .-|+.++. -+++
T Consensus 559 edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP--------~D~e 625 (1050)
T TIGR02468 559 SDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP--------HDQQ 625 (1050)
T ss_pred HHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC--------CCHH
Confidence 54 555552 1227764 344 58999999999999985432 23334322 45877775 3889
Q ss_pred HHHHHHHHHhcC
Q 012096 414 EITELVKRFMDL 425 (471)
Q Consensus 414 ~l~~~i~~~l~~ 425 (471)
.|+++|.++++|
T Consensus 626 aLA~AL~~LL~D 637 (1050)
T TIGR02468 626 AIADALLKLVAD 637 (1050)
T ss_pred HHHHHHHHHhhC
Confidence 999999999987
No 70
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.87 E-value=6.1e-06 Score=83.30 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=57.8
Q ss_pred CCCceEeeccchHH---hhhhc----ccceeeccC---Cc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeee
Q 012096 331 VDRGIVVPWCDQLE---VLCHS----SIGGFWTHC---GL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKV 399 (471)
Q Consensus 331 ~~nv~v~~~~pq~~---lL~~~----~~~~~Ithg---G~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l 399 (471)
.+++.+.+++++.+ ++..+ ++ ||... |. .++.||+++|+|+|+... ......+++. ..|+.+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcCC-CcEEEe
Confidence 46777788877655 36555 55 77643 43 599999999999998754 3344555533 468877
Q ss_pred ecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 400 KKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+. -++++++++|.++++|
T Consensus 389 ~~--------~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 389 DV--------LDLEAIASALEDALSD 406 (439)
T ss_pred CC--------CCHHHHHHHHHHHHhC
Confidence 65 3889999999999987
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.87 E-value=4.3e-06 Score=81.67 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEcCCCC-ccc-------c--ccCCCceEeeccch-HHhhhhcc
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS--GVRFFWVSRGDTS-WFK-------D--GCVDRGIVVPWCDQ-LEVLCHSS 350 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~--~~~vi~~~~~~~~-~~~-------~--~~~~nv~v~~~~pq-~~lL~~~~ 350 (471)
.+++..|.... ...+.+..++..+.+. +.++++.-.+... .+. . ...+++.+.+|.+. ..+|..++
T Consensus 186 ~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad 265 (355)
T cd03819 186 PVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALAD 265 (355)
T ss_pred eEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCC
Confidence 66677777664 2344455555555543 3455444333221 111 0 23467888888653 45888899
Q ss_pred cceeec--cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCc
Q 012096 351 IGGFWT--HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNN 427 (471)
Q Consensus 351 ~~~~It--hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 427 (471)
+-++-+ +-|. +++.||+++|+|+|+... ......+.+. +.|..++. -+.+++.++|.+++..+.
T Consensus 266 ~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~--------~~~~~l~~~i~~~~~~~~ 332 (355)
T cd03819 266 IVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP--------GDAEALAQALDQILSLLP 332 (355)
T ss_pred EEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC--------CCHHHHHHHHHHHHhhCH
Confidence 833333 2333 599999999999988643 3345556544 57888765 389999999976665332
Q ss_pred hhHHHHHHHHHHHHH
Q 012096 428 DERKAMSKRAREVQE 442 (471)
Q Consensus 428 ~~~~~~~~~a~~l~~ 442 (471)
.+...++++|++..+
T Consensus 333 ~~~~~~~~~a~~~~~ 347 (355)
T cd03819 333 EGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 233345555544443
No 72
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.86 E-value=2.8e-06 Score=81.06 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=156.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc--cchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE--EWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFV 90 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 90 (471)
|||.|--... -|+.-+-.+.++|.+ +||+|.+.+-+ ...+.+... ++.+..+..-.. .......
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~--~GheV~it~R~~~~~~~LL~~y-----g~~y~~iG~~g~------~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEK--RGHEVLITARDKDETEELLDLY-----GIDYIVIGKHGD------SLYGKLL 66 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHh--CCCEEEEEEeccchHHHHHHHc-----CCCeEEEcCCCC------CHHHHHH
Confidence 4565544433 499999999999999 99999998864 333555555 777777753211 1111122
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCccc
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSE 170 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (471)
....+ ..++++.+.+ .+||++|+- .+..+..+|.-+|||.|.+.-........
T Consensus 67 ~~~~R-----~~~l~~~~~~--~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~------------------- 119 (335)
T PF04007_consen 67 ESIER-----QYKLLKLIKK--FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN------------------- 119 (335)
T ss_pred HHHHH-----HHHHHHHHHh--hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc-------------------
Confidence 21111 1223333322 369999975 45667789999999999985543321100
Q ss_pred CCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEE-EcchHHhhHHHHHHHHhcCCCCccccccCC
Q 012096 171 RGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLL-LSSVYELEAKVNDTLKAKFPFPVYPIGPTI 249 (471)
Q Consensus 171 ~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~~vGp~~ 249 (471)
-..+|- ....-.|.... ...+. . ...+ ..+. ++.+.|+- ++=|+
T Consensus 120 -----~Lt~Pl---a~~i~~P~~~~---~~~~~---~---~G~~-~~i~~y~G~~E~a----------------yl~~F- 164 (335)
T PF04007_consen 120 -----RLTLPL---ADVIITPEAIP---KEFLK---R---FGAK-NQIRTYNGYKELA----------------YLHPF- 164 (335)
T ss_pred -----eeehhc---CCeeECCcccC---HHHHH---h---cCCc-CCEEEECCeeeEE----------------eecCC-
Confidence 000000 00000110000 00000 0 0000 1121 33332221 11111
Q ss_pred CCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcC----CCHHHHHHHHHHHHhCCCcEEEEEcCCCC-
Q 012096 250 PYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWS----VSSVQMDEIVAGVRNSGVRFFWVSRGDTS- 324 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~----~~~~~~~~~~~al~~~~~~vi~~~~~~~~- 324 (471)
..++++.+-+.-. +.+.|++=+.+..+ .....+..+++.+++.+..+|...+...+
T Consensus 165 ------------------~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~ 225 (335)
T PF04007_consen 165 ------------------KPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQR 225 (335)
T ss_pred ------------------CCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchh
Confidence 1233344444422 34577777766432 23355667888888888765544333221
Q ss_pred ccccccCCCceEe-eccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCC
Q 012096 325 WFKDGCVDRGIVV-PWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPE 403 (471)
Q Consensus 325 ~~~~~~~~nv~v~-~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~ 403 (471)
...+.. ++.+. .-++..++|.++++ ||+=|| ....||...|+|.|.+ +.++-...-+.+.+. |+ ....
T Consensus 226 ~~~~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~~-- 294 (335)
T PF04007_consen 226 ELFEKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYHS-- 294 (335)
T ss_pred hHHhcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEec--
Confidence 111111 23332 45566689999999 998877 7889999999999975 222322233445534 54 3332
Q ss_pred CCCCCccCHHHHHHHHHHHh
Q 012096 404 IGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l 423 (471)
-+.+++.+.+.+.+
T Consensus 295 ------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 ------TDPDEIVEYVRKNL 308 (335)
T ss_pred ------CCHHHHHHHHHHhh
Confidence 27777777555544
No 73
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.84 E-value=2.3e-06 Score=83.53 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=82.3
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCCC-Cccc-----cccCCCceEeeccchH---Hhhhhccccee
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSG-VRFFWVSRGDT-SWFK-----DGCVDRGIVVPWCDQL---EVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~-~~vi~~~~~~~-~~~~-----~~~~~nv~v~~~~pq~---~lL~~~~~~~~ 354 (471)
.+++..|.... ...+..+++++.++. .++++.-.+.. ..+. ....+|+.+.+|+|+. .++..+++.++
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ 269 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVF 269 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEe
Confidence 56677777653 234556777777776 55555433322 1111 1234689999999974 37777888333
Q ss_pred ec---cCCc-chHHHHHHcCCceecccccccccchhhhhhh-hhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 355 WT---HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVE-DWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 355 It---hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+ +.|. .++.||+++|+|+|+....+... .+.+ . +.|...+. -+.+++.++|.++++|
T Consensus 270 ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~-~~g~~~~~--------~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 270 PSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHG-VTGLVVPP--------GDPAALAEAIRRLLED 332 (357)
T ss_pred CCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCC-CceEEeCC--------CCHHHHHHHHHHHHHC
Confidence 33 2344 47999999999999875544433 3332 4 67877765 3899999999999987
No 74
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.80 E-value=6.1e-07 Score=86.25 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=95.2
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHhCCC---cEEEEEcCCCCccccccC--CCceEeeccchHHhhhhcccceeeccC
Q 012096 284 SVLYVSLGSLWSVSSVQMDEIVAGVRNSGV---RFFWVSRGDTSWFKDGCV--DRGIVVPWCDQLEVLCHSSIGGFWTHC 358 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~~~~~~~~al~~~~~---~vi~~~~~~~~~~~~~~~--~nv~v~~~~pq~~lL~~~~~~~~Ithg 358 (471)
++|.+--||-.+.-...+..++++..++.. .+++....+.+.+..... ..+.+.+ ...+++..+++ +|+-.
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~~--~~~~~m~~aDl--al~~S 243 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEISY--DTHKALLEAEF--AFICS 243 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEec--cHHHHHHhhhH--HHhcC
Confidence 589999999986444555555566655432 233322211111111111 1223332 34568999999 99999
Q ss_pred CcchHHHHHHcCCceecccc--cccccchhhhhh---hhhcceeee-e----cC---CCCCCCccCHHHHHHHHHHHhcC
Q 012096 359 GLNSTLEAAYAGVPMLTFPI--MMDQVPNSKLIV---EDWKIGWKV-K----KP---EIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 359 G~~s~~eal~~GvP~v~~P~--~~DQ~~na~~v~---~~lG~G~~l-~----~~---~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
|..|+ |++.+|+|||+ +. ..=|..||+++. .. |+.-.+ + .+ +. -....|++.|.+.+.+ ...
T Consensus 244 GT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEl-lQ~~~t~~~la~~i~~-~~~ 318 (347)
T PRK14089 244 GTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPEL-LQEFVTVENLLKAYKE-MDR 318 (347)
T ss_pred cHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchh-hcccCCHHHHHHHHHH-HHH
Confidence 99999 99999999988 44 346888999988 33 554333 1 00 00 0134799999999977 222
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHH
Q 012096 426 NNDERKAMSKRAREVQEICQEAVAENGSSITNFDA 460 (471)
Q Consensus 426 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 460 (471)
+.+++...++.+.+. ++++.+..+.
T Consensus 319 -----~~~~~~~~~l~~~l~-----~~a~~~~A~~ 343 (347)
T PRK14089 319 -----EKFFKKSKELREYLK-----HGSAKNVAKI 343 (347)
T ss_pred -----HHHHHHHHHHHHHhc-----CCHHHHHHHH
Confidence 567777777766662 3455544443
No 75
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.77 E-value=1.2e-05 Score=78.40 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=77.9
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEcCCCCc-cc---c--ccCCCceEeeccchHH---hhhhcccc
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS--GVRFFWVSRGDTSW-FK---D--GCVDRGIVVPWCDQLE---VLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~--~~~vi~~~~~~~~~-~~---~--~~~~nv~v~~~~pq~~---lL~~~~~~ 352 (471)
.+++..|+... ...+.+...+..+.+. +.++++.-.+.... +. . ..++|+.+.+++|+.+ ++..+++
T Consensus 180 ~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi- 258 (355)
T cd03799 180 LRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADL- 258 (355)
T ss_pred eEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCE-
Confidence 56666777653 2233333334444333 34555543332211 11 1 2356899999997543 7788888
Q ss_pred eeec--c--------CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHH
Q 012096 353 GFWT--H--------CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 353 ~~It--h--------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 422 (471)
+|. . |.-+++.||+++|+|+|+.+.. .....+++. ..|...+. -+.+++.++|.++
T Consensus 259 -~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~~~~~--------~~~~~l~~~i~~~ 324 (355)
T cd03799 259 -FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGLLVPP--------GDPEALADAIERL 324 (355)
T ss_pred -EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceEEeCC--------CCHHHHHHHHHHH
Confidence 555 2 2346899999999999986543 233345432 47877765 2889999999999
Q ss_pred hcC
Q 012096 423 MDL 425 (471)
Q Consensus 423 l~~ 425 (471)
+++
T Consensus 325 ~~~ 327 (355)
T cd03799 325 LDD 327 (355)
T ss_pred HhC
Confidence 987
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.74 E-value=5.2e-06 Score=80.21 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=74.7
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCC-Ccc---cc--ccCCCceEeeccch-HHhhhhcccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDT-SWF---KD--GCVDRGIVVPWCDQ-LEVLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~-~~~---~~--~~~~nv~v~~~~pq-~~lL~~~~~~ 352 (471)
.+++..|+... ......+++++..+ +.++++.-.+.. ..+ .. ...+++.+.++.+. .+++..+++
T Consensus 190 ~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~- 266 (353)
T cd03811 190 PVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADL- 266 (353)
T ss_pred eEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCE-
Confidence 67777787763 22233344444443 345544322221 111 11 12467888888774 458888888
Q ss_pred eeec--c--CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHH---HHHHHHHhcC
Q 012096 353 GFWT--H--CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEI---TELVKRFMDL 425 (471)
Q Consensus 353 ~~It--h--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l---~~~i~~~l~~ 425 (471)
+|. + |.-+++.||+++|+|+|+... ......+++. +.|...+. -+.+.+ .+++.+++++
T Consensus 267 -~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~--------~~~~~~~~~~~~i~~~~~~ 332 (353)
T cd03811 267 -FVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDG-ENGLLVPV--------GDEAALAAAALALLDLLLD 332 (353)
T ss_pred -EEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCC-CceEEECC--------CCHHHHHHHHHHHHhccCC
Confidence 553 2 334689999999999998543 3556667655 77888876 266777 5555556655
No 77
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.72 E-value=7.6e-06 Score=79.97 Aligned_cols=132 Identities=10% Similarity=0.143 Sum_probs=80.1
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCC-Ccccc-----ccCCCceEeeccch-HHhhhhcccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDT-SWFKD-----GCVDRGIVVPWCDQ-LEVLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~-~~~~~-----~~~~nv~v~~~~pq-~~lL~~~~~~ 352 (471)
.+++..|+... ...+..+++++.++ +.++++.-.+.. +.+.. ...+|+.+.++..+ ..+|..+++
T Consensus 189 ~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~- 265 (360)
T cd04951 189 FVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADL- 265 (360)
T ss_pred EEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhce-
Confidence 66777777653 22233344444332 466666433321 11111 22457888888764 458899998
Q ss_pred eeeccC----CcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCch
Q 012096 353 GFWTHC----GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNND 428 (471)
Q Consensus 353 ~~Ithg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 428 (471)
+|.-. ..+++.||+++|+|+|+. |...+...+++ .|..+.. -+.+++.++|.++++++
T Consensus 266 -~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~---~g~~~~~--------~~~~~~~~~i~~ll~~~-- 327 (360)
T cd04951 266 -FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD---SGLIVPI--------SDPEALANKIDEILKMS-- 327 (360)
T ss_pred -EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC---CceEeCC--------CCHHHHHHHHHHHHhCC--
Confidence 55432 246899999999999874 55566666663 4545544 38889999999998543
Q ss_pred hHHHHHHHHHH
Q 012096 429 ERKAMSKRARE 439 (471)
Q Consensus 429 ~~~~~~~~a~~ 439 (471)
+.+++...+
T Consensus 328 --~~~~~~~~~ 336 (360)
T cd04951 328 --GEERDIIGA 336 (360)
T ss_pred --HHHHHHHHH
Confidence 455444333
No 78
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.69 E-value=4.2e-05 Score=74.33 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=74.9
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh-----CCCcEEEEEcCCCCcc-------ccccCCCceEeeccc-hHHhhhhccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN-----SGVRFFWVSRGDTSWF-------KDGCVDRGIVVPWCD-QLEVLCHSSI 351 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~-----~~~~vi~~~~~~~~~~-------~~~~~~nv~v~~~~p-q~~lL~~~~~ 351 (471)
.+++..|+.... ..+..+++++.. .+.++++.-.+..... ......++.+.+..+ ...++..+++
T Consensus 194 ~~i~~~G~~~~~--K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 271 (365)
T cd03807 194 FLIGIVARLHPQ--KDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDV 271 (365)
T ss_pred eEEEEecccchh--cCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCE
Confidence 566777777642 223334444432 2355655433221110 112335677666554 3458889998
Q ss_pred ceeeccCC----cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 352 GGFWTHCG----LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 352 ~~~IthgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..++. -+.+++.++|.+++++
T Consensus 272 --~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~--------~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 272 --FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP--------GDPEALAEAIEALLAD 332 (365)
T ss_pred --EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC--------CCHHHHHHHHHHHHhC
Confidence 775543 379999999999999853 4445555552 5666654 2789999999999987
No 79
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.66 E-value=3.1e-05 Score=75.75 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=69.6
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHhCC--CcEEEEEcCCC-Cccc------cccCCCceEeeccchHH---hhhhccccee
Q 012096 287 YVSLGSLWSVSSVQMDEIVAGVRNSG--VRFFWVSRGDT-SWFK------DGCVDRGIVVPWCDQLE---VLCHSSIGGF 354 (471)
Q Consensus 287 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~vi~~~~~~~-~~~~------~~~~~nv~v~~~~pq~~---lL~~~~~~~~ 354 (471)
++..|+... ...+..++++++++. .++++.-.+.. ..+. ....+++.+.+++++.+ ++..+++ +
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~--~ 271 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL--F 271 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE--E
Confidence 345677653 233455666766654 55554433311 1111 12346899999998764 5666666 5
Q ss_pred eccC----Cc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 355 WTHC----GL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 355 Ithg----G~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.+. |. +++.||+++|+|+|+....+ +...++ ..|...+. ... +.++|.+++++
T Consensus 272 v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~---~~g~~~~~---------~~~-l~~~i~~l~~~ 330 (363)
T cd04955 272 YLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLG---DKAIYFKV---------GDD-LASLLEELEAD 330 (363)
T ss_pred EeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeec---CCeeEecC---------chH-HHHHHHHHHhC
Confidence 4433 33 47999999999999875432 222233 23444433 112 99999999987
No 80
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.60 E-value=1.9e-05 Score=76.48 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=76.5
Q ss_pred EEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCcc-c----cc--cCCCceEeeccchHH---hhhhcccceee
Q 012096 286 LYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWF-K----DG--CVDRGIVVPWCDQLE---VLCHSSIGGFW 355 (471)
Q Consensus 286 I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~-~----~~--~~~nv~v~~~~pq~~---lL~~~~~~~~I 355 (471)
+.+..|.... .+....+++++++.+.++++.-.+..... . .. ..+++.+.+++++.+ ++..+++-++-
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~p 250 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFP 250 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeC
Confidence 3444566642 23345577788888888776544432111 1 11 247899999998753 67888883333
Q ss_pred c--cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhc-ceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 356 T--HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWK-IGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 356 t--hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+ +-|. .++.||+++|+|+|+.... .+...++ . | .|...+ ..+++.++|.++++.
T Consensus 251 s~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~-~-~~~g~l~~----------~~~~l~~~l~~l~~~ 308 (335)
T cd03802 251 ILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVE-D-GVTGFLVD----------SVEELAAAVARADRL 308 (335)
T ss_pred CcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhee-C-CCcEEEeC----------CHHHHHHHHHHHhcc
Confidence 3 2344 4899999999999987543 3334444 3 3 565442 378999999988754
No 81
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.59 E-value=5.7e-05 Score=74.15 Aligned_cols=80 Identities=16% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCceEeeccchHH---hhhhcccceeecc----------CCcchHHHHHHcCCceecccccccccchhhhhhhhhccee
Q 012096 331 VDRGIVVPWCDQLE---VLCHSSIGGFWTH----------CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGW 397 (471)
Q Consensus 331 ~~nv~v~~~~pq~~---lL~~~~~~~~Ith----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 397 (471)
.+++.+.+++|+.+ ++..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 56788889998644 5888888 6532 2346899999999999986653 356666655 7888
Q ss_pred eeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 398 KVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 398 ~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.++. -+.+++.++|.++++|
T Consensus 317 ~~~~--------~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 317 LVPE--------GDVAALAAALGRLLAD 336 (367)
T ss_pred EECC--------CCHHHHHHHHHHHHcC
Confidence 7765 3889999999999987
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.57 E-value=2.3e-05 Score=76.99 Aligned_cols=126 Identities=16% Similarity=0.138 Sum_probs=77.8
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCC--CcEEEEEcCCC--Ccccc-----ccCCCceEeeccch--HH---hhhhcc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSG--VRFFWVSRGDT--SWFKD-----GCVDRGIVVPWCDQ--LE---VLCHSS 350 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~--~~vi~~~~~~~--~~~~~-----~~~~nv~v~~~~pq--~~---lL~~~~ 350 (471)
.+++..|.........+..+++++.++. .++++ +|..+ +.+.. .+++++.+.+|.++ .. .+..++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d 259 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVS 259 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCc
Confidence 4556667664322344566777776653 44443 33322 11111 23568999998753 22 344566
Q ss_pred cceeecc----CCcchHHHHHHcCCceeccc-ccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 351 IGGFWTH----CGLNSTLEAAYAGVPMLTFP-IMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 351 ~~~~Ith----gG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+ +|.. |--.++.||+++|+|+|+.- .. ....-+++. ..|..++. -+.+++.++|.++++|
T Consensus 260 ~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g~~eiv~~~-~~G~lv~~--------~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 260 A--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----GPRDIIKPG-LNGELYTP--------GNIDEFVGKLNKVISG 324 (359)
T ss_pred E--EEECCcccCcChHHHHHHHcCCCEEEeCCCC----ChHHHccCC-CceEEECC--------CCHHHHHHHHHHHHhC
Confidence 6 6643 22479999999999999865 32 222345433 56877765 3899999999999988
Q ss_pred C
Q 012096 426 N 426 (471)
Q Consensus 426 ~ 426 (471)
+
T Consensus 325 ~ 325 (359)
T PRK09922 325 E 325 (359)
T ss_pred c
Confidence 4
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.56 E-value=7.5e-05 Score=72.97 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=76.2
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhC--CCcEEEEEcCCC-Cccc-----cccCCCceEeeccch-HHhhhhccccee
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNS--GVRFFWVSRGDT-SWFK-----DGCVDRGIVVPWCDQ-LEVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~--~~~vi~~~~~~~-~~~~-----~~~~~nv~v~~~~pq-~~lL~~~~~~~~ 354 (471)
.+.+..|.... ...+.+...+..+.+. +.+++++-.++. +.+. ....+++.+.++..+ ..++..+++ +
T Consensus 193 ~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~ 270 (358)
T cd03812 193 FVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV--F 270 (358)
T ss_pred EEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE--E
Confidence 56667777653 2234444444444332 345544332221 1111 123467888887554 458888888 6
Q ss_pred ecc----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCC
Q 012096 355 WTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLN 426 (471)
Q Consensus 355 Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 426 (471)
|.- |-..++.||+++|+|+|+....+ ....++ . +.|..... -++++++++|.++++|+
T Consensus 271 v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~-~-~~~~~~~~--------~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 271 LFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLT-D-LVKFLSLD--------ESPEIWAEEILKLKSED 332 (358)
T ss_pred EecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhc-c-CccEEeCC--------CCHHHHHHHHHHHHhCc
Confidence 643 33578999999999999865433 333444 3 55555543 26799999999999983
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.52 E-value=0.00027 Score=69.98 Aligned_cols=130 Identities=13% Similarity=0.127 Sum_probs=75.8
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhC--CCcEEEEEcCCC-Cc----ccc---cc---CCCceE-eeccch---HHhhh
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNS--GVRFFWVSRGDT-SW----FKD---GC---VDRGIV-VPWCDQ---LEVLC 347 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~--~~~vi~~~~~~~-~~----~~~---~~---~~nv~v-~~~~pq---~~lL~ 347 (471)
.+++..|.... ...+..++++++++ +.++++..++.. .. +.. .. ..++.. .+++++ ..++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 279 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS 279 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH
Confidence 45556676653 23355566676664 456655544322 11 111 11 123443 356764 34788
Q ss_pred hcccceeecc---CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHh
Q 012096 348 HSSIGGFWTH---CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 348 ~~~~~~~Ith---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
.+++ +|.- -| ..++.||+++|+|+|+... ......+++. +.|..++. +. ....-..+++.++|.+++
T Consensus 280 ~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~-~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 280 NAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP-DN-SDADGFQAELAKAINILL 350 (388)
T ss_pred hCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC-CC-CcccchHHHHHHHHHHHH
Confidence 8888 6642 23 3577999999999998654 3455566644 67888876 21 000011289999999999
Q ss_pred cC
Q 012096 424 DL 425 (471)
Q Consensus 424 ~~ 425 (471)
+|
T Consensus 351 ~~ 352 (388)
T TIGR02149 351 AD 352 (388)
T ss_pred hC
Confidence 87
No 85
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.51 E-value=8.8e-06 Score=79.70 Aligned_cols=122 Identities=12% Similarity=0.154 Sum_probs=78.4
Q ss_pred CeEEEEEeCCCc--C-CCHHHHHHHHHHHHhCCCcEEEEEcCCCCc-------ccccc--CCCceEeeccc---hHHhhh
Q 012096 283 SSVLYVSLGSLW--S-VSSVQMDEIVAGVRNSGVRFFWVSRGDTSW-------FKDGC--VDRGIVVPWCD---QLEVLC 347 (471)
Q Consensus 283 ~~~I~vs~GS~~--~-~~~~~~~~~~~al~~~~~~vi~~~~~~~~~-------~~~~~--~~nv~v~~~~p---q~~lL~ 347 (471)
++.|+|++=-.. . ...+.+..+++++.+.+.++++.++...++ +.... .+|+.+.+-++ ...++.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 348778775433 3 335678899999988876666665432111 11111 35788886554 556888
Q ss_pred hcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceee-eecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWK-VKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~-l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
++++ +||.++.+. .||.+.|+|+|.+- +.+ .-++ . |..+. +.. ++++|.+++.++++
T Consensus 281 ~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~-~-g~nvl~vg~---------~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 281 NADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRL-R-ADSVIDVDP---------DKEEIVKAIEKLLD 338 (365)
T ss_pred hCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhh-h-cCeEEEeCC---------CHHHHHHHHHHHhC
Confidence 9998 998875555 99999999999774 211 1111 2 43333 433 88999999999653
No 86
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.48 E-value=1.8e-06 Score=83.62 Aligned_cols=139 Identities=11% Similarity=0.098 Sum_probs=81.8
Q ss_pred CCCeEEEEEeCCCcCCC-H---HHHHHHHHHHHhC-CCcEEEEEcCCCCc---c---ccccCCCceEeeccc---hHHhh
Q 012096 281 PDSSVLYVSLGSLWSVS-S---VQMDEIVAGVRNS-GVRFFWVSRGDTSW---F---KDGCVDRGIVVPWCD---QLEVL 346 (471)
Q Consensus 281 ~~~~~I~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~vi~~~~~~~~~---~---~~~~~~nv~v~~~~p---q~~lL 346 (471)
.+++.|+|++=...+.. + ..+..+++++.+. +.++||.+...+.+ + .... +|+++++-++ ...+|
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~ll 256 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSLL 256 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHHH
Confidence 45669999985555544 3 4455566677666 78899999854311 1 1123 4888886555 56688
Q ss_pred hhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhh--hhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 347 CHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVE--DWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 347 ~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~--~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
.++++ +|+..| |-.-||.++|+|+|.+ ..+..|-+- . |..+.+.. +.++|.++|.++++
T Consensus 257 ~~a~~--vvgdSs-GI~eEa~~lg~P~v~i------R~~geRqe~r~~-~~nvlv~~---------~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 257 KNADL--VVGDSS-GIQEEAPSLGKPVVNI------RDSGERQEGRER-GSNVLVGT---------DPEAIIQAIEKALS 317 (346)
T ss_dssp HHESE--EEESSH-HHHHHGGGGT--EEEC------SSS-S-HHHHHT-TSEEEETS---------SHHHHHHHHHHHHH
T ss_pred hcceE--EEEcCc-cHHHHHHHhCCeEEEe------cCCCCCHHHHhh-cceEEeCC---------CHHHHHHHHHHHHh
Confidence 99999 999999 4444999999999999 333333321 2 45555433 99999999999997
Q ss_pred CCchhHHHHHHHHHHHHHHH
Q 012096 425 LNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 425 ~~~~~~~~~~~~a~~l~~~~ 444 (471)
+ ..+.++......-+
T Consensus 318 ~-----~~~~~~~~~~~npY 332 (346)
T PF02350_consen 318 D-----KDFYRKLKNRPNPY 332 (346)
T ss_dssp ------HHHHHHHHCS--TT
T ss_pred C-----hHHHHhhccCCCCC
Confidence 5 45555444433333
No 87
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.46 E-value=0.00014 Score=70.99 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=78.2
Q ss_pred EEEEEeCCCcCC-CHHHHHHHHHHHHhCC--CcEEEEEcCCC--Ccc-----ccccCCCceEeeccchH---Hhhhhccc
Q 012096 285 VLYVSLGSLWSV-SSVQMDEIVAGVRNSG--VRFFWVSRGDT--SWF-----KDGCVDRGIVVPWCDQL---EVLCHSSI 351 (471)
Q Consensus 285 ~I~vs~GS~~~~-~~~~~~~~~~al~~~~--~~vi~~~~~~~--~~~-----~~~~~~nv~v~~~~pq~---~lL~~~~~ 351 (471)
.+.+..|+.... ..+.+...+..+.... .++++.-.... ... .....+|+.+.+++|+. .++..+++
T Consensus 196 ~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~ 275 (365)
T cd03809 196 PYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARA 275 (365)
T ss_pred CeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhh
Confidence 455566776632 2333333333333332 45554432222 111 11245789999999865 46788887
Q ss_pred ceeecc----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCc
Q 012096 352 GGFWTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNN 427 (471)
Q Consensus 352 ~~~Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 427 (471)
+|.- |..+++.||+++|+|+|+.... .....+. ..|..+.. -+.+++.++|.++++|
T Consensus 276 --~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~---~~~~~~~~--------~~~~~~~~~i~~l~~~-- 336 (365)
T cd03809 276 --FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAG---DAALYFDP--------LDPEALAAAIERLLED-- 336 (365)
T ss_pred --hcccchhccCCCCHHHHhcCCCcEEecCCC----Cccceec---CceeeeCC--------CCHHHHHHHHHHHhcC--
Confidence 4432 3346899999999999985442 2222233 34555554 2789999999999987
Q ss_pred hhHHHHHHHHHH
Q 012096 428 DERKAMSKRARE 439 (471)
Q Consensus 428 ~~~~~~~~~a~~ 439 (471)
+..+....+
T Consensus 337 ---~~~~~~~~~ 345 (365)
T cd03809 337 ---PALREELRE 345 (365)
T ss_pred ---HHHHHHHHH
Confidence 555444433
No 88
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.43 E-value=0.0023 Score=67.71 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=71.1
Q ss_pred cEEEEEcCCC-------------ccChHHHHHHHHHH--------HhcCCCc----EEEEEECccchh-------hhcCC
Q 012096 13 CHIVALPYPG-------------RGHINPMMNLCKLL--------VSRNPNV----FITFVVTEEWLS-------FIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~-------------~GH~~p~l~La~~L--------~~~~rGh----~Vt~~~~~~~~~-------~~~~~ 60 (471)
|+|++++.-+ .|+..=.+.+|++| ++ +|| +|+++|-..... .++..
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~--~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~ 333 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKL--QGLEITPKILIVTRLIPDAEGTTCNQRLEKV 333 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHh--cCCCccceEEEEecCCCCccccccccccccc
Confidence 6787766544 56777888888874 67 999 788998542211 11111
Q ss_pred CCCCCCeEEEecCCCCCCc-----hhhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhh
Q 012096 61 HGNHNNIRFETIPNVIPSE-----LVRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNR 133 (471)
Q Consensus 61 ~~~~~~~~~~~ip~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~ 133 (471)
. ..++++...+|-+.... .....++..++..+...+. +.+..+.. .+||+|++.+.. ..+..+|++
T Consensus 334 ~-~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~---~~~~~~~~---~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 334 Y-GTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAE---KEILAELQ---GKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred c-CCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHH---HHHHHhcC---CCCCEEEECCCchHHHHHHHHHh
Confidence 0 02377777887554321 1122344555555543322 22222222 369999997644 557789999
Q ss_pred cCCCeEEE
Q 012096 134 RNIPVASF 141 (471)
Q Consensus 134 lgIP~v~~ 141 (471)
+|||.+.+
T Consensus 407 lgVP~v~t 414 (784)
T TIGR02470 407 LGVTQCTI 414 (784)
T ss_pred cCCCEEEE
Confidence 99998875
No 89
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.42 E-value=0.00043 Score=69.37 Aligned_cols=81 Identities=20% Similarity=0.136 Sum_probs=54.7
Q ss_pred cCCCceEeeccchHH---hhhhcccceeecc---CCc-chHHHHHHcCCceecccccccccchhhhhh---hhhcceeee
Q 012096 330 CVDRGIVVPWCDQLE---VLCHSSIGGFWTH---CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIV---EDWKIGWKV 399 (471)
Q Consensus 330 ~~~nv~v~~~~pq~~---lL~~~~~~~~Ith---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~---~~lG~G~~l 399 (471)
+.++|.+.+++|+.+ +|..+++ +|+- -|. -++.||+++|+|+|+.-..+.- ..-++ +. ..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g-~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGG-PTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCC-CceEEe
Confidence 346899999988644 7888888 5532 233 4889999999999976433211 11121 22 466553
Q ss_pred ecCCCCCCCccCHHHHHHHHHHHhcCC
Q 012096 400 KKPEIGSESLVTRDEITELVKRFMDLN 426 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~i~~~l~~~ 426 (471)
. ++++++++|.++++++
T Consensus 377 -~---------d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -S---------TAEEYAEAIEKILSLS 393 (419)
T ss_pred -C---------CHHHHHHHHHHHHhCC
Confidence 3 7899999999999874
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.42 E-value=0.00023 Score=72.34 Aligned_cols=199 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHH--hC--CC
Q 012096 238 FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVR--NS--GV 313 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~--~~--~~ 313 (471)
..-++.|||-...+..... +..+++.+-+.-.+++++|-+--||-.+.=...+..++++.+ .+ +.
T Consensus 379 ~gv~v~yVGHPL~d~i~~~-----------~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l 447 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSF-----------SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTH 447 (608)
T ss_pred cCCCeEEECCcHHhhcccC-----------CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCe
Confidence 6678999996665432110 122333444443445668999999987643445556666666 43 34
Q ss_pred cEEEEEcCCC--CccccccC-C---CceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceeccc-ccccccchh
Q 012096 314 RFFWVSRGDT--SWFKDGCV-D---RGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFP-IMMDQVPNS 386 (471)
Q Consensus 314 ~vi~~~~~~~--~~~~~~~~-~---nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P-~~~DQ~~na 386 (471)
+++....... +.+.+... . .+.++.--...+++..+++ .+.-.|- .+.|+..+|+|||++= ...=-...+
T Consensus 448 ~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Ia 524 (608)
T PRK01021 448 QLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLA 524 (608)
T ss_pred EEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHH
Confidence 5655433221 11111111 1 1223211012578999998 8888776 5789999999998852 111122344
Q ss_pred hhhhhh----hc-----ceeeeecCCCCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHH
Q 012096 387 KLIVED----WK-----IGWKVKKPEIGS-ESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSIT 456 (471)
Q Consensus 387 ~~v~~~----lG-----~G~~l~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 456 (471)
+++.+. .+ +|..+-. +..+ -...|++.|.+++ ++|.| +.+++..++-=+++++...+|-++-+
T Consensus 525 k~Lvki~i~yIsLpNIIagr~VvP-EllqgQ~~~tpe~La~~l-~lL~d-----~~~r~~~~~~l~~lr~~Lg~~~~~~~ 597 (608)
T PRK01021 525 KYIFKIILPAYSLPNIILGSTIFP-EFIGGKKDFQPEEVAAAL-DILKT-----SQSKEKQKDACRDLYQAMNESASTMK 597 (608)
T ss_pred HHHHhccCCeeehhHHhcCCCcch-hhcCCcccCCHHHHHHHH-HHhcC-----HHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 555530 00 1222222 2221 1357999999997 78877 44444444333344444334555433
Q ss_pred H
Q 012096 457 N 457 (471)
Q Consensus 457 ~ 457 (471)
.
T Consensus 598 ~ 598 (608)
T PRK01021 598 E 598 (608)
T ss_pred H
Confidence 3
No 91
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.41 E-value=1.4e-05 Score=79.55 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=57.0
Q ss_pred CCceEeeccchH-Hhhhhcccceee--cc--CCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCC
Q 012096 332 DRGIVVPWCDQL-EVLCHSSIGGFW--TH--CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIG 405 (471)
Q Consensus 332 ~nv~v~~~~pq~-~lL~~~~~~~~I--th--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 405 (471)
.++.+.+++++. .++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+... +.. |.|+.+..
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i~-----~~~-~~g~lv~~---- 347 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGID-----ALP-GAELLVAA---- 347 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccccc-----ccC-CcceEeCC----
Confidence 578899999853 47888888 65 32 455 369999999999999876433211 123 66766654
Q ss_pred CCCccCHHHHHHHHHHHhcC
Q 012096 406 SESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~ 425 (471)
+++++.++|.++++|
T Consensus 348 -----~~~~la~ai~~ll~~ 362 (397)
T TIGR03087 348 -----DPADFAAAILALLAN 362 (397)
T ss_pred -----CHHHHHHHHHHHHcC
Confidence 899999999999987
No 92
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.36 E-value=0.00043 Score=68.26 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=57.0
Q ss_pred CCceEeeccc-hHHhhhhcccceee--cc--CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCC
Q 012096 332 DRGIVVPWCD-QLEVLCHSSIGGFW--TH--CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGS 406 (471)
Q Consensus 332 ~nv~v~~~~p-q~~lL~~~~~~~~I--th--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 406 (471)
.++.+.++.. -..++..+++ +| ++ |--.++.||+++|+|+|+... ..+..-+++. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcCC-CceEEeCC-----
Confidence 4566666554 3458899998 66 33 334699999999999999664 3345555533 56777765
Q ss_pred CCccCHHHHHHHHHHHhcC
Q 012096 407 ESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~ 425 (471)
-+.+++.++|.+++++
T Consensus 323 ---~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 323 ---GDAVALARALQPYVSD 338 (374)
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 3889999999999987
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.34 E-value=0.0011 Score=66.29 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=59.9
Q ss_pred CCCceEeeccchHH---hhhhcccceeecc---------CCc-chHHHHHHcCCceecccccccccchhhhhhhhhccee
Q 012096 331 VDRGIVVPWCDQLE---VLCHSSIGGFWTH---------CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGW 397 (471)
Q Consensus 331 ~~nv~v~~~~pq~~---lL~~~~~~~~Ith---------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~ 397 (471)
.+++.+.+|+|+.+ ++..+++ ||.- -|. .++.||+++|+|+|+.... .....+++. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 46799999999754 6788888 6642 344 5689999999999987543 344455533 5687
Q ss_pred eeecCCCCCCCccCHHHHHHHHHHHhc-C
Q 012096 398 KVKKPEIGSESLVTRDEITELVKRFMD-L 425 (471)
Q Consensus 398 ~l~~~~~~~~~~~~~~~l~~~i~~~l~-~ 425 (471)
.++. -+.+++.++|.++++ |
T Consensus 351 lv~~--------~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 351 LVPE--------NDAQALAQRLAAFSQLD 371 (406)
T ss_pred EeCC--------CCHHHHHHHHHHHHhCC
Confidence 7765 389999999999998 6
No 94
>PLN02949 transferase, transferring glycosyl groups
Probab=98.32 E-value=0.00028 Score=71.27 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCCCceEeeccchHH---hhhhcccceeec---cCCcc-hHHHHHHcCCceecccccccccchhhhhhh-hhc-ceeeee
Q 012096 330 CVDRGIVVPWCDQLE---VLCHSSIGGFWT---HCGLN-STLEAAYAGVPMLTFPIMMDQVPNSKLIVE-DWK-IGWKVK 400 (471)
Q Consensus 330 ~~~nv~v~~~~pq~~---lL~~~~~~~~It---hgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~-~lG-~G~~l~ 400 (471)
+.+++.+.+++|+.+ +|..+++ +|. +-|.| ++.||+++|+|+|+....+-- ...+.+ .-| .|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC-
Confidence 356899999998554 6778887 663 34444 799999999999997653310 011110 001 23221
Q ss_pred cCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 012096 401 KPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~ 444 (471)
. +.++++++|.++++++......+.+++++-.+.+
T Consensus 407 ~---------~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 407 T---------TVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred C---------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 2 7899999999999854222335556655544433
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.30 E-value=0.00035 Score=69.82 Aligned_cols=72 Identities=8% Similarity=-0.063 Sum_probs=50.2
Q ss_pred EeeccchHHhhhhcccceeeccC----CcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccC
Q 012096 336 VVPWCDQLEVLCHSSIGGFWTHC----GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVT 411 (471)
Q Consensus 336 v~~~~pq~~lL~~~~~~~~Ithg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~ 411 (471)
+.++.+..+++...++ ||.-+ -..++.||+++|+|+|+.-..+ + .-+.+. +-|... . +
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~-~---------~ 349 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY-D---------D 349 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec-C---------C
Confidence 4466666678988888 88763 3468999999999999976443 2 333322 333222 3 7
Q ss_pred HHHHHHHHHHHhcC
Q 012096 412 RDEITELVKRFMDL 425 (471)
Q Consensus 412 ~~~l~~~i~~~l~~ 425 (471)
.+++.++|.++|++
T Consensus 350 ~~~~a~ai~~~l~~ 363 (462)
T PLN02846 350 GKGFVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHHHHcc
Confidence 78999999999975
No 96
>PLN00142 sucrose synthase
Probab=98.30 E-value=0.00061 Score=72.08 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=63.2
Q ss_pred ccChHHHHH--------HHHHHHhcCCCcEEE----EEECccch-------hhhcCCCCCCCCeEEEecCCCCCCch---
Q 012096 23 RGHINPMMN--------LCKLLVSRNPNVFIT----FVVTEEWL-------SFIGSGHGNHNNIRFETIPNVIPSEL--- 80 (471)
Q Consensus 23 ~GH~~p~l~--------La~~L~~~~rGh~Vt----~~~~~~~~-------~~~~~~~~~~~~~~~~~ip~~~~~~~--- 80 (471)
.|++.-.+. ++++|++ +||+|+ ++|--... ..++... ..++.+...+|-+.....
T Consensus 303 GGQ~vYVl~~aral~~el~~~l~~--~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~-~~~~~~I~rvP~g~~~~~l~~ 379 (815)
T PLN00142 303 GGQVVYILDQVRALENEMLLRIKQ--QGLDIKPQILIVTRLIPDAKGTTCNQRLEKVS-GTEHSHILRVPFRTEKGILRK 379 (815)
T ss_pred CCceehHHHHHHHHHHHHHHHHHh--cCCCccceeEEEEeccCCccCCcccCcceecc-CCCceEEEecCCCCCcccccc
Confidence 356655654 4478888 999774 77742111 1111110 023677777775543211
Q ss_pred -hhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecc
Q 012096 81 -VRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~ 144 (471)
...-++..++..+...+. +.+.++.. .+||+|.+.+.. ..+..+|+++|||++.+..+
T Consensus 380 ~i~ke~l~p~L~~f~~~~~---~~~~~~~~---~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 380 WISRFDVWPYLETFAEDAA---SEILAELQ---GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred ccCHHHHHHHHHHHHHHHH---HHHHHhcC---CCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 122234455555543322 22222222 369999998654 56778999999999986443
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=0.0016 Score=68.68 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=63.8
Q ss_pred CCCceEeeccch-HHhhhhcccceeec---cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCC
Q 012096 331 VDRGIVVPWCDQ-LEVLCHSSIGGFWT---HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIG 405 (471)
Q Consensus 331 ~~nv~v~~~~pq-~~lL~~~~~~~~It---hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 405 (471)
.++|.+.+|.++ ..+|..+++ ||. +.|+ +++.||+++|+|+|+.... .....+++. ..|+.++.
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~---- 641 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPA---- 641 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCC----
Confidence 467888899875 348888888 664 4564 7999999999999997642 345556543 46888876
Q ss_pred CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 012096 406 SESLVTRDEITELVKRFMDLNNDERKAMSKRAREV 440 (471)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l 440 (471)
+..+.+++.++|.+++.+.. ..+.+++++++.
T Consensus 642 --~d~~~~~La~aL~~ll~~l~-~~~~l~~~ar~~ 673 (694)
T PRK15179 642 --DTVTAPDVAEALARIHDMCA-ADPGIARKAADW 673 (694)
T ss_pred --CCCChHHHHHHHHHHHhChh-ccHHHHHHHHHH
Confidence 22466677777777654210 005666655443
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.25 E-value=0.00087 Score=65.13 Aligned_cols=197 Identities=16% Similarity=0.106 Sum_probs=108.2
Q ss_pred CCCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHh-----CC
Q 012096 238 FPFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRN-----SG 312 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~-----~~ 312 (471)
..-++.|||-.+.+..... .......+.+ -.+++++|-+--||-.+.=...+..++++.+. .+
T Consensus 151 ~g~~~~~VGHPl~d~~~~~-----------~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~ 218 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPE-----------PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPD 218 (373)
T ss_pred cCCCeEEECCcchhhhccC-----------CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5668999996655432210 1122333333 22355699999999875333334445555443 24
Q ss_pred CcEEEEEcCCC-Cc----cccccCCCceEe-eccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccc-cccccch
Q 012096 313 VRFFWVSRGDT-SW----FKDGCVDRGIVV-PWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPI-MMDQVPN 385 (471)
Q Consensus 313 ~~vi~~~~~~~-~~----~~~~~~~nv~v~-~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~-~~DQ~~n 385 (471)
.++++...... .. .......++.+. ..-.-.++|..+++ .+.-.|- .|.|+..+|+|||++=- ..=-...
T Consensus 219 l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~i 295 (373)
T PF02684_consen 219 LQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFI 295 (373)
T ss_pred eEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHH
Confidence 56666544321 11 111112223332 22234557888888 7777665 67899999999988632 1122234
Q ss_pred hhhhhhhhcc-e-------eeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHH
Q 012096 386 SKLIVEDWKI-G-------WKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITN 457 (471)
Q Consensus 386 a~~v~~~lG~-G-------~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 457 (471)
|+++.+. .. | ..+-. +..+ ...|++.|.+++.++++| +..++......+.+++..+.|.++.+.
T Consensus 296 ak~lvk~-~~isL~Niia~~~v~P-EliQ-~~~~~~~i~~~~~~ll~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 296 AKRLVKV-KYISLPNIIAGREVVP-ELIQ-EDATPENIAAELLELLEN-----PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred HHHhhcC-CEeechhhhcCCCcch-hhhc-ccCCHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 4444321 11 1 11111 1001 347999999999999998 555666666666666665566665544
No 99
>PLN02275 transferase, transferring glycosyl groups
Probab=98.24 E-value=0.0014 Score=64.53 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=52.2
Q ss_pred CCceEee-ccchHH---hhhhcccceeec----c--CCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeee
Q 012096 332 DRGIVVP-WCDQLE---VLCHSSIGGFWT----H--CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVK 400 (471)
Q Consensus 332 ~nv~v~~-~~pq~~---lL~~~~~~~~It----h--gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~ 400 (471)
+|+.+.. |+|+.+ +|+.+++ +|. . -|. +++.||+++|+|+|+... ..+...+++. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 4566554 788655 5888998 763 1 123 479999999999998643 3466666644 6787753
Q ss_pred cCCCCCCCccCHHHHHHHHHHHh
Q 012096 401 KPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 401 ~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
+.++++++|.++|
T Consensus 359 ----------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ----------SSSELADQLLELL 371 (371)
T ss_pred ----------CHHHHHHHHHHhC
Confidence 4678999888764
No 100
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.23 E-value=8.9e-05 Score=70.60 Aligned_cols=345 Identities=13% Similarity=0.110 Sum_probs=181.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCC-cEEEEEECccch--hhhcCCCCCCCCeEEEecC-CCCCC-chhhhhc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPN-VFITFVVTEEWL--SFIGSGHGNHNNIRFETIP-NVIPS-ELVRARD 85 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~~~~~ip-~~~~~-~~~~~~~ 85 (471)
+|+||+++ ++++=.++-+-+|.+++.+ .+ .+..++.+.... ++... .+....++ +.+.. .......
T Consensus 2 ~~~Kv~~I-~GTRPE~iKmapli~~~~~--~~~~~~~vi~TGQH~d~em~~~------~le~~~i~~pdy~L~i~~~~~t 72 (383)
T COG0381 2 KMLKVLTI-FGTRPEAIKMAPLVKALEK--DPDFELIVIHTGQHRDYEMLDQ------VLELFGIRKPDYDLNIMKPGQT 72 (383)
T ss_pred CceEEEEE-EecCHHHHHHhHHHHHHHh--CCCCceEEEEecccccHHHHHH------HHHHhCCCCCCcchhccccCCC
Confidence 56677665 5677889999999999999 76 777777776655 33221 11111222 11111 1112233
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcC--ch-hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcC
Q 012096 86 FLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDT--FL-AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNG 162 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~--~~-~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 162 (471)
+.+....... .+.+++++. +||+|++-. .. .++..+|.+++||+.=+-.+.-+.
T Consensus 73 l~~~t~~~i~----~~~~vl~~~-----kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~-------------- 129 (383)
T COG0381 73 LGEITGNIIE----GLSKVLEEE-----KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTG-------------- 129 (383)
T ss_pred HHHHHHHHHH----HHHHHHHhh-----CCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccC--------------
Confidence 4443333332 356666664 599998644 44 566788999999998763332110
Q ss_pred CCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhccccccEEEEcchHHhhHHHHHHHHhcCCC-C
Q 012096 163 HFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKVSKAQCLLLSSVYELEAKVNDTLKAKFPF-P 241 (471)
Q Consensus 163 ~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~-~ 241 (471)
. .++|. - .++...+... +.-+.++--.-+ -..+...++ +
T Consensus 130 ------------~-~~~PE-----------E---~NR~l~~~~S---------~~hfapte~ar~----nLl~EG~~~~~ 169 (383)
T COG0381 130 ------------D-LYFPE-----------E---INRRLTSHLS---------DLHFAPTEIARK----NLLREGVPEKR 169 (383)
T ss_pred ------------C-CCCcH-----------H---HHHHHHHHhh---------hhhcCChHHHHH----HHHHcCCCccc
Confidence 0 00111 0 0001101000 001111111000 001222333 3
Q ss_pred ccccccCCCCcccccccccccccCCCCCCchhccc-cccCCCCeEEEEEeCCCcCCCHHHHHHHHHHH----HhC-CCcE
Q 012096 242 VYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHW-LDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGV----RNS-GVRF 315 (471)
Q Consensus 242 ~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al----~~~-~~~v 315 (471)
++.+|-...+.-..... ......+.... +... .+..|++|+=--.+.. +.+..+.+++ ++. ++.+
T Consensus 170 IfvtGnt~iDal~~~~~-------~~~~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~v 240 (383)
T COG0381 170 IFVTGNTVIDALLNTRD-------RVLEDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIV 240 (383)
T ss_pred eEEeCChHHHHHHHHHh-------hhccchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceE
Confidence 55566554432211000 00112222221 2222 2338888864333333 3445555544 334 3455
Q ss_pred EEEEcCCC--Cccc-cccC--CCceEe---eccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhh
Q 012096 316 FWVSRGDT--SWFK-DGCV--DRGIVV---PWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSK 387 (471)
Q Consensus 316 i~~~~~~~--~~~~-~~~~--~nv~v~---~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~ 387 (471)
|.-+...+ ..+. ..+. +|+.+. +|.+...++.++.+ ++|-.|. -.-||-..|+|++++=..-++|.
T Consensus 241 iyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE--- 314 (383)
T COG0381 241 IYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE--- 314 (383)
T ss_pred EEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---
Confidence 54443331 1111 1222 357765 67788889999988 9998763 57899999999999988888888
Q ss_pred hhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHH
Q 012096 388 LIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462 (471)
Q Consensus 388 ~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (471)
+++ . |.-+.+.. +.+.+.+++.+++++ +.+.++......-+- +|.+|.+.++.+.
T Consensus 315 ~v~-a-gt~~lvg~---------~~~~i~~~~~~ll~~-----~~~~~~m~~~~npYg----dg~as~rIv~~l~ 369 (383)
T COG0381 315 GVE-A-GTNILVGT---------DEENILDAATELLED-----EEFYERMSNAKNPYG----DGNASERIVEILL 369 (383)
T ss_pred cee-c-CceEEeCc---------cHHHHHHHHHHHhhC-----hHHHHHHhcccCCCc----CcchHHHHHHHHH
Confidence 444 4 55555555 789999999999998 666665555444443 2445555444443
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.22 E-value=0.0021 Score=63.40 Aligned_cols=122 Identities=10% Similarity=0.001 Sum_probs=69.2
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhCCCcEEEEEcCCC-Ccccc-ccCCCceEeeccchHH---hhhhcccceee---
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNSGVRFFWVSRGDT-SWFKD-GCVDRGIVVPWCDQLE---VLCHSSIGGFW--- 355 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~-~~~~nv~v~~~~pq~~---lL~~~~~~~~I--- 355 (471)
.+++..|++.. .+.+.+..++. ...+..+++.-.++. ..... ...+||.+.+++|+.+ .+.++++.++-
T Consensus 206 ~~i~y~G~l~~~~d~~ll~~la~--~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~ 283 (373)
T cd04950 206 PVIGYYGAIAEWLDLELLEALAK--ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRL 283 (373)
T ss_pred CEEEEEeccccccCHHHHHHHHH--HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCcc
Confidence 45555688774 22233332222 123455555333211 11111 1136899999998655 67888883332
Q ss_pred ---ccCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 356 ---THCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 356 ---thgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.++. +.+.|++++|+|+|+.++ ...++.. +.++.... +.+++.++|.+++.+
T Consensus 284 ~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~~~~~~~~---------d~~~~~~ai~~~l~~ 340 (373)
T cd04950 284 NELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-DEVVLIAD---------DPEEFVAAIEKALLE 340 (373)
T ss_pred chhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-CcEEEeCC---------CHHHHHHHHHHHHhc
Confidence 23333 458999999999998763 1222322 32333333 899999999998765
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.20 E-value=0.00078 Score=66.45 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=52.0
Q ss_pred CCCceEeecc--chH---HhhhhcccceeeccC---Cc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeec
Q 012096 331 VDRGIVVPWC--DQL---EVLCHSSIGGFWTHC---GL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 331 ~~nv~v~~~~--pq~---~lL~~~~~~~~Ithg---G~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
.+++.+.++. ++. .++..+++ |+.-. |. .++.||+++|+|+|+.... .....+.+. ..|+..+
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC-
Confidence 3567787776 432 46788888 77543 33 4999999999999986543 233345433 4565443
Q ss_pred CCCCCCCccCHHHHHHHHHHHhcC
Q 012096 402 PEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
+.+.+..+|.+++++
T Consensus 323 ---------~~~~~a~~i~~ll~~ 337 (372)
T cd03792 323 ---------TVEEAAVRILYLLRD 337 (372)
T ss_pred ---------CcHHHHHHHHHHHcC
Confidence 456778899999987
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.17 E-value=0.00096 Score=67.91 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=72.9
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh---CCCcEEEEEcCCC---Ccc---ccccCCCceE-eeccchH--Hhhhhcccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN---SGVRFFWVSRGDT---SWF---KDGCVDRGIV-VPWCDQL--EVLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~---~~~~vi~~~~~~~---~~~---~~~~~~nv~v-~~~~pq~--~lL~~~~~~ 352 (471)
.+++..|.... .+.+..+++++.+ .+.++++.-.++. +.+ ....+.++.+ .+|-... .+++.+++
T Consensus 283 ~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv- 359 (466)
T PRK00654 283 PLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADM- 359 (466)
T ss_pred cEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCE-
Confidence 55666677653 2223344444443 3677776533321 111 1223455543 4663332 47888888
Q ss_pred eeecc---CCcc-hHHHHHHcCCceeccccc--ccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 353 GFWTH---CGLN-STLEAAYAGVPMLTFPIM--MDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 353 ~~Ith---gG~~-s~~eal~~GvP~v~~P~~--~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
||.- -|.| +.+||+++|+|.|+.... .|.-.+...-.+. +.|+.++. -++++|.++|.++++
T Consensus 360 -~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~--------~d~~~la~~i~~~l~ 427 (466)
T PRK00654 360 -FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD--------FNAEDLLRALRRALE 427 (466)
T ss_pred -EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC--------CCHHHHHHHHHHHHH
Confidence 6642 3544 889999999999986542 2322211111223 67888875 388999999999875
No 104
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.14 E-value=0.0033 Score=64.19 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=73.6
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhCCCcEEEEEcCCC---C---ccccccCCCceEeeccchH---Hhhhhccccee
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNSGVRFFWVSRGDT---S---WFKDGCVDRGIVVPWCDQL---EVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~~~~vi~~~~~~~---~---~~~~~~~~nv~v~~~~pq~---~lL~~~~~~~~ 354 (471)
.+++..|.... ...+.+...+..+.+.+.++++.-.+++ + .+....+.++.+....+.. .+++.+++ +
T Consensus 292 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv--~ 369 (473)
T TIGR02095 292 PLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADF--I 369 (473)
T ss_pred CEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCE--E
Confidence 45566677664 2233333333333334567666543321 1 1112235566666555543 47788888 6
Q ss_pred ecc---CCcc-hHHHHHHcCCceecccccc--cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 355 WTH---CGLN-STLEAAYAGVPMLTFPIMM--DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 355 Ith---gG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
|.- -|.| +.+||+++|+|+|+....+ |.-.+...-... +.|+.++. -+++++.++|.++++
T Consensus 370 l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~--------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 370 LMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE--------YDPGALLAALSRALR 436 (473)
T ss_pred EeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC--------CCHHHHHHHHHHHHH
Confidence 643 3444 7889999999999865432 322211111112 67887775 388999999999886
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.09 E-value=0.0024 Score=65.21 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=72.7
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhCCCcEEEEEcCCC---Cc---cccccCCCceEeeccchH---Hhhhhccccee
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNSGVRFFWVSRGDT---SW---FKDGCVDRGIVVPWCDQL---EVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~~~~vi~~~~~~~---~~---~~~~~~~nv~v~~~~pq~---~lL~~~~~~~~ 354 (471)
.+++..|.... ...+.+...+..+.+.+.++++.-.++. +. +....++|+.+....++. .++..+++ +
T Consensus 297 ~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv--~ 374 (476)
T cd03791 297 PLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADF--F 374 (476)
T ss_pred CEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCE--E
Confidence 55666677663 2233333333334444566666543332 11 111235677654333332 36788888 6
Q ss_pred ecc---CCc-chHHHHHHcCCceecccccc--cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 355 WTH---CGL-NSTLEAAYAGVPMLTFPIMM--DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 355 Ith---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
+.- -|. .+.+||+++|+|+|+....+ |--.+...-.+. |.|+.++. -+++++.++|.++++
T Consensus 375 l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~--------~~~~~l~~~i~~~l~ 441 (476)
T cd03791 375 LMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG--------YNADALLAALRRALA 441 (476)
T ss_pred ECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC--------CCHHHHHHHHHHHHH
Confidence 643 223 37799999999999865432 222211111123 58888876 378999999999885
No 106
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.03 E-value=1.4e-05 Score=64.68 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=72.4
Q ss_pred EEEEEeCCCcCCCH--H--HHHHHHHHHHhCCC-cEEEEEcCCCCcccccc-----CC--CceEeeccch-HHhhhhccc
Q 012096 285 VLYVSLGSLWSVSS--V--QMDEIVAGVRNSGV-RFFWVSRGDTSWFKDGC-----VD--RGIVVPWCDQ-LEVLCHSSI 351 (471)
Q Consensus 285 ~I~vs~GS~~~~~~--~--~~~~~~~al~~~~~-~vi~~~~~~~~~~~~~~-----~~--nv~v~~~~pq-~~lL~~~~~ 351 (471)
.+||+-||..- +. . .-.+....+.+.|+ +.|..+|.....+.... -+ .+...+|-|- .+..+.+++
T Consensus 5 ~vFVTVGtT~F-d~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 5 TVFVTVGTTSF-DDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred EEEEEeccccH-HHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 79999999982 21 1 12336666777884 66776766521121110 11 2334577774 556677888
Q ss_pred ceeeccCCcchHHHHHHcCCceecccc----cccccchhhhhhhh
Q 012096 352 GGFWTHCGLNSTLEAAYAGVPMLTFPI----MMDQVPNSKLIVED 392 (471)
Q Consensus 352 ~~~IthgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~ 392 (471)
+|+|+|.||+.|.|..|+|.|+++- -..|-.-|..+++.
T Consensus 84 --VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e 126 (170)
T KOG3349|consen 84 --VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE 126 (170)
T ss_pred --EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc
Confidence 9999999999999999999999984 35788899999844
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.01 E-value=0.00018 Score=71.20 Aligned_cols=165 Identities=19% Similarity=0.227 Sum_probs=89.0
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCc---ccc------ccCCCceEeeccchHHhh---hhc
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSW---FKD------GCVDRGIVVPWCDQLEVL---CHS 349 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~---~~~------~~~~nv~v~~~~pq~~lL---~~~ 349 (471)
++.++|.||......++..+..-.+.|++.|.-.+|.......+ +.. -.++++.+.++.++.+.| ..+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~ 362 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLA 362 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhC
Confidence 44599999999999999999999999999999999988654311 111 124578888887765544 445
Q ss_pred ccceee---ccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCC
Q 012096 350 SIGGFW---THCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLN 426 (471)
Q Consensus 350 ~~~~~I---thgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~ 426 (471)
++ ++ ..+|..|++|||+.|||+|.+|--.=.-..+..+-..+|+.-.+-. +.++-.+.-.++-+|
T Consensus 363 DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---------s~~eYv~~Av~La~D- 430 (468)
T PF13844_consen 363 DI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---------SEEEYVEIAVRLATD- 430 (468)
T ss_dssp SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---------SHHHHHHHHHHHHH--
T ss_pred CE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---------CHHHHHHHHHHHhCC-
Confidence 55 54 4578899999999999999999543223333333335577765554 666644444456555
Q ss_pred chhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 012096 427 NDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISL 467 (471)
Q Consensus 427 ~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 467 (471)
..++ +++++++++++.. |.--+...+++.+.+
T Consensus 431 ----~~~l---~~lR~~Lr~~~~~--SpLfd~~~~ar~lE~ 462 (468)
T PF13844_consen 431 ----PERL---RALRAKLRDRRSK--SPLFDPKRFARNLEA 462 (468)
T ss_dssp ----HHHH---HHHHHHHHHHHHH--SGGG-HHHHHHHHHH
T ss_pred ----HHHH---HHHHHHHHHHHhh--CCCCCHHHHHHHHHH
Confidence 4444 2333444333211 333455555555554
No 108
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.0053 Score=58.61 Aligned_cols=206 Identities=17% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCCCccccccCCCCcc-cccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhC-----
Q 012096 238 FPFPVYPIGPTIPYFE-IKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNS----- 311 (471)
Q Consensus 238 ~~~~~~~vGp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~----- 311 (471)
+.-...|||-...+.. .. +..+.+.+-+.-..++.+|.+--||-.+.-...+..+.++..++
T Consensus 154 ~g~~~~yVGHpl~d~i~~~------------~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~ 221 (381)
T COG0763 154 FGLPCTYVGHPLADEIPLL------------PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYP 221 (381)
T ss_pred cCCCeEEeCChhhhhcccc------------ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5555899995554432 11 23344555554444556999999998863223333344444332
Q ss_pred CCcEEEEEcCCC-Cccccc-cC-----CCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccc-ccccc
Q 012096 312 GVRFFWVSRGDT-SWFKDG-CV-----DRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPI-MMDQV 383 (471)
Q Consensus 312 ~~~vi~~~~~~~-~~~~~~-~~-----~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~-~~DQ~ 383 (471)
+.+|+.-+.... ...... .. -+..+.+.-- .+.+..+++ .+.-+|- -+.|+..+|+|||+.=- ..=-.
T Consensus 222 ~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~ 297 (381)
T COG0763 222 DLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEK-RKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITY 297 (381)
T ss_pred CceEEEecCcHHHHHHHHHHhhccccCceEEecCchH-HHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHH
Confidence 367777665432 111110 10 1122222111 226777777 7777765 56899999999987521 01111
Q ss_pred chhhhhhhhhc-------ceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHH
Q 012096 384 PNSKLIVEDWK-------IGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSIT 456 (471)
Q Consensus 384 ~na~~v~~~lG-------~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 456 (471)
..|++..+-.= +|..+-. +..+ ...+++.|.+++..++.|+ .+...+++....+...++ .++++..
T Consensus 298 ~iak~lvk~~yisLpNIi~~~~ivP-Eliq-~~~~pe~la~~l~~ll~~~-~~~~~~~~~~~~l~~~l~----~~~~~e~ 370 (381)
T COG0763 298 FIAKRLVKLPYVSLPNILAGREIVP-ELIQ-EDCTPENLARALEELLLNG-DRREALKEKFRELHQYLR----EDPASEI 370 (381)
T ss_pred HHHHHhccCCcccchHHhcCCccch-HHHh-hhcCHHHHHHHHHHHhcCh-HhHHHHHHHHHHHHHHHc----CCcHHHH
Confidence 23333331100 0111111 1111 3478999999999999883 122355666666666655 3557777
Q ss_pred HHHHHHHHHH
Q 012096 457 NFDAFLNDIS 466 (471)
Q Consensus 457 ~~~~~~~~~~ 466 (471)
+.+.+++.+.
T Consensus 371 aA~~vl~~~~ 380 (381)
T COG0763 371 AAQAVLELLL 380 (381)
T ss_pred HHHHHHHHhc
Confidence 7777777653
No 109
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.89 E-value=0.022 Score=56.76 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=99.2
Q ss_pred cccccCCCCeEEEEEeCCCcCC------C----HHHHHHHHHHHHhCCCcEEEEEcC-------C-C----Ccccccc--
Q 012096 275 HWLDSQPDSSVLYVSLGSLWSV------S----SVQMDEIVAGVRNSGVRFFWVSRG-------D-T----SWFKDGC-- 330 (471)
Q Consensus 275 ~~l~~~~~~~~I~vs~GS~~~~------~----~~~~~~~~~al~~~~~~vi~~~~~-------~-~----~~~~~~~-- 330 (471)
.|+...+.+++|-|+.-..... . ...+..+++.+.+.+++|++.-.. . . ..+...+
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~ 305 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSD 305 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccc
Confidence 4544333445787876544311 1 123444555555568888766431 1 1 1111122
Q ss_pred CCCceEe--eccch--HHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceee-eecCCCC
Q 012096 331 VDRGIVV--PWCDQ--LEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWK-VKKPEIG 405 (471)
Q Consensus 331 ~~nv~v~--~~~pq--~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~-l~~~~~~ 405 (471)
+.+++++ ++-|. ..+++++++ +|..== =+..-|+..|||.+.++. |+ -...-++ .+|..-. .+.
T Consensus 306 ~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~Rl-Ha~I~a~~~gvP~i~i~Y--~~-K~~~~~~-~lg~~~~~~~~---- 374 (426)
T PRK10017 306 PARYHVVMDELNDLEMGKILGACEL--TVGTRL-HSAIISMNFGTPAIAINY--EH-KSAGIMQ-QLGLPEMAIDI---- 374 (426)
T ss_pred ccceeEecCCCChHHHHHHHhhCCE--EEEecc-hHHHHHHHcCCCEEEeee--hH-HHHHHHH-HcCCccEEech----
Confidence 2233433 23343 357888887 886422 256678889999999998 32 2233333 4477654 555
Q ss_pred CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 406 SESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
..++.++|.+.+.++++|. +.+++..++.-+++++ .+.+.+.++++++.+.
T Consensus 375 --~~l~~~~Li~~v~~~~~~r----~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~~ 425 (426)
T PRK10017 375 --RHLLDGSLQAMVADTLGQL----PALNARLAEAVSRERQ------TGMQMVQSVLERIGEV 425 (426)
T ss_pred --hhCCHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccC
Confidence 4579999999999999874 5666665555555554 3456777888776553
No 110
>PLN02316 synthase/transferase
Probab=97.87 E-value=0.063 Score=58.78 Aligned_cols=118 Identities=10% Similarity=0.013 Sum_probs=67.0
Q ss_pred CCCceEeeccchH---Hhhhhcccceeecc---CCc-chHHHHHHcCCceecccccc--cccchh----hhhhhh--hcc
Q 012096 331 VDRGIVVPWCDQL---EVLCHSSIGGFWTH---CGL-NSTLEAAYAGVPMLTFPIMM--DQVPNS----KLIVED--WKI 395 (471)
Q Consensus 331 ~~nv~v~~~~pq~---~lL~~~~~~~~Ith---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na----~~v~~~--lG~ 395 (471)
++++.+....+.. .+++.+++ |+.- =|. .+.+||+++|+|.|+....+ |.-... .+.+.. -+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4566665444543 47888888 7753 233 48999999999888754422 222111 010101 146
Q ss_pred eeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHH
Q 012096 396 GWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDI 465 (471)
Q Consensus 396 G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (471)
|+..+. -+++.|..+|.+++.+ |.+....++...++.+..--|-...+++.++.+
T Consensus 977 Gflf~~--------~d~~aLa~AL~raL~~-------~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 977 GFSFDG--------ADAAGVDYALNRAISA-------WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred eEEeCC--------CCHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 777765 4889999999999864 333334444444444433334444444444433
No 111
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.85 E-value=0.033 Score=53.99 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=170.1
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE-CccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHH
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV-TEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESV 93 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 93 (471)
.+.+=..+.|-++-..+|.++|+++..++.+++-+ ++...+.+...-. +.+...-+|-.. ...
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D~----------~~~---- 114 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLDL----------PIA---- 114 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcCc----------hHH----
Confidence 55566667899999999999999955588888877 5555555544321 134444454111 112
Q ss_pred HHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchHHHHHHHHhhHHHHhcCCCCCCcccC
Q 012096 94 STKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSASLFSVFHHFELLVQNGHFPVELSER 171 (471)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (471)
++..++.+ +||++|.-..- +....-+++.|||.+.+..=. +
T Consensus 115 -------v~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL-S------------------------ 157 (419)
T COG1519 115 -------VRRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLVNARL-S------------------------ 157 (419)
T ss_pred -------HHHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeee-c------------------------
Confidence 34445555 59988755444 444556788999999962100 0
Q ss_pred CccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhh-ccccccEEEEcchHHhhHHHHHHHHhcCC-CCccccccCC
Q 012096 172 GEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVS-KVSKAQCLLLSSVYELEAKVNDTLKAKFP-FPVYPIGPTI 249 (471)
Q Consensus 172 ~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~l~~~~~~~~~~~~~-~~~~~vGp~~ 249 (471)
-+... .+.......+ ...+.+.++..+-..-+. ++. ++ +++..+|.+-
T Consensus 158 ---------------~rS~~---------~y~k~~~~~~~~~~~i~li~aQse~D~~R-----f~~-LGa~~v~v~GNlK 207 (419)
T COG1519 158 ---------------DRSFA---------RYAKLKFLARLLFKNIDLILAQSEEDAQR-----FRS-LGAKPVVVTGNLK 207 (419)
T ss_pred ---------------hhhhH---------HHHHHHHHHHHHHHhcceeeecCHHHHHH-----HHh-cCCcceEEeccee
Confidence 00001 0111111111 123344444444222221 122 22 2355566554
Q ss_pred CCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHh-C-CCcEEEEEcCCCCccc
Q 012096 250 PYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRN-S-GVRFFWVSRGDTSWFK 327 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~-~-~~~vi~~~~~~~~~~~ 327 (471)
..-...... ......+...++.. + .+.|..+|... ..+.+-....++.+ . +..+||+ +.+++.+.
T Consensus 208 fd~~~~~~~--------~~~~~~~r~~l~~~--r-~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlV-PRHpERf~ 274 (419)
T COG1519 208 FDIEPPPQL--------AAELAALRRQLGGH--R-PVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILV-PRHPERFK 274 (419)
T ss_pred ecCCCChhh--------HHHHHHHHHhcCCC--C-ceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEe-cCChhhHH
Confidence 332110000 00011233333332 2 34555555332 23333334444433 2 2445553 33321111
Q ss_pred c--------------------c-cCCCceEeeccc-hHHhhhhccc----ceeeccCCcchHHHHHHcCCceeccccccc
Q 012096 328 D--------------------G-CVDRGIVVPWCD-QLEVLCHSSI----GGFWTHCGLNSTLEAAYAGVPMLTFPIMMD 381 (471)
Q Consensus 328 ~--------------------~-~~~nv~v~~~~p-q~~lL~~~~~----~~~IthgG~~s~~eal~~GvP~v~~P~~~D 381 (471)
. . ...+|.+.+-+- ...++.-+++ +=++.+||+| ..|++++|+|+|.=|...-
T Consensus 275 ~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~N 353 (419)
T COG1519 275 AVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFN 353 (419)
T ss_pred HHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcccc
Confidence 0 1 112567766654 3334544443 1145688886 7899999999999999999
Q ss_pred ccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 012096 382 QVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQ 445 (471)
Q Consensus 382 Q~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~ 445 (471)
|.+-++++... |.|+.++ +++.|.+++..+++| .+.+..|.+++.++-...+
T Consensus 354 f~ei~~~l~~~-ga~~~v~----------~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 354 FSDIAERLLQA-GAGLQVE----------DADLLAKAVELLLAD-EDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHHHHhc-CCeEEEC----------CHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhh
Confidence 99999999977 8887775 466788888777776 3333445555555444443
No 112
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.80 E-value=0.036 Score=57.49 Aligned_cols=76 Identities=14% Similarity=0.008 Sum_probs=53.2
Q ss_pred CceEeeccchH-Hhhhhcccceeecc---CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCC
Q 012096 333 RGIVVPWCDQL-EVLCHSSIGGFWTH---CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSE 407 (471)
Q Consensus 333 nv~v~~~~pq~-~lL~~~~~~~~Ith---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~ 407 (471)
++.+.++.++. +++..+++ ||.- -| ..++.||+++|+|+|+.-..+... +. . |.+..+..
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~-~-g~nGll~~------ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FR-S-FPNCLTYK------ 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Ee-e-cCCeEecC------
Confidence 35556776755 48888888 7763 33 368999999999999987654321 22 2 33333333
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 012096 408 SLVTRDEITELVKRFMDLN 426 (471)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~ 426 (471)
+.+++.++|.++|+++
T Consensus 667 ---D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 ---TSEDFVAKVKEALANE 682 (794)
T ss_pred ---CHHHHHHHHHHHHhCc
Confidence 7899999999999873
No 113
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.76 E-value=0.00016 Score=70.66 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=85.1
Q ss_pred EEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCC-CccccccCCCceEeeccchH---HhhhhcccceeeccCCc-c
Q 012096 287 YVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDT-SWFKDGCVDRGIVVPWCDQL---EVLCHSSIGGFWTHCGL-N 361 (471)
Q Consensus 287 ~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~~~~~nv~v~~~~pq~---~lL~~~~~~~~IthgG~-~ 361 (471)
++..|.... ...+..+++++++++.++++.-.+.. +.+.....+||.+.+++|+. .++..+++-++-+.-|. .
T Consensus 198 il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g~ 275 (351)
T cd03804 198 YLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFGI 275 (351)
T ss_pred EEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCCc
Confidence 445666653 33466678888888877766543332 22333456799999999974 47888998333344444 4
Q ss_pred hHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 362 STLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 362 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
++.||+++|+|+|+....+ ....+++. +.|+.++. -+.+.+.++|.++++|
T Consensus 276 ~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~--------~~~~~la~~i~~l~~~ 326 (351)
T cd03804 276 VPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE--------QTVESLAAAVERFEKN 326 (351)
T ss_pred hHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC--------CCHHHHHHHHHHHHhC
Confidence 6789999999999975432 44445544 67888875 3788999999999987
No 114
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.74 E-value=0.023 Score=56.65 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEcCCCCccccccCCCceEeeccc-h---HHhhhhcccceeecc----CCcchHHHHHHc
Q 012096 299 VQMDEIVAGVRNSGVR-FFWVSRGDTSWFKDGCVDRGIVVPWCD-Q---LEVLCHSSIGGFWTH----CGLNSTLEAAYA 369 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~-vi~~~~~~~~~~~~~~~~nv~v~~~~p-q---~~lL~~~~~~~~Ith----gG~~s~~eal~~ 369 (471)
..+..+++|+.+++.. -++.+|.... ..+.++...++.. + ..++..+++ ||.- |--.++.||+++
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~----~~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~ 329 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSP----FTAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNYPLILCEALSI 329 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCc----ccccceEEecCcCCHHHHHHHHHhCCE--EEECCccccCcCHHHHHHHc
Confidence 3456688888877543 3344554221 1134566666653 3 335666888 7754 233689999999
Q ss_pred CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHH
Q 012096 370 GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELV 419 (471)
Q Consensus 370 GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i 419 (471)
|+|+|+....+ ....+. . +.|..++. -+.++|++++
T Consensus 330 G~PVVat~~gG----~~Eiv~-~-~~G~lv~~--------~d~~~La~~~ 365 (405)
T PRK10125 330 GVPVIATHSDA----AREVLQ-K-SGGKTVSE--------EEVLQLAQLS 365 (405)
T ss_pred CCCEEEeCCCC----hHHhEe-C-CcEEEECC--------CCHHHHHhcc
Confidence 99999987754 222333 4 56888876 2777888654
No 115
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.72 E-value=0.0022 Score=63.42 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=59.3
Q ss_pred cCCCceEeeccchHH---hhhhcccceeecc----CCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeec
Q 012096 330 CVDRGIVVPWCDQLE---VLCHSSIGGFWTH----CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 330 ~~~nv~v~~~~pq~~---lL~~~~~~~~Ith----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
.+.++.+.+++|+.+ ++..+++ +|.. .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 346788889998544 6888888 6642 343 5778999999999997652 344555543 56775532
Q ss_pred CCCCCCCccCHHHHHHHHHHHhcC
Q 012096 402 PEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
. .+.++++++|.++++|
T Consensus 328 -~------~d~~~la~~I~~ll~d 344 (380)
T PRK15484 328 -P------MTSDSIISDINRTLAD 344 (380)
T ss_pred -C------CCHHHHHHHHHHHHcC
Confidence 1 3899999999999988
No 116
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.71 E-value=0.01 Score=58.42 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=68.2
Q ss_pred cCCCceEeeccchH-HhhhhcccceeeccC-C-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCC
Q 012096 330 CVDRGIVVPWCDQL-EVLCHSSIGGFWTHC-G-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGS 406 (471)
Q Consensus 330 ~~~nv~v~~~~pq~-~lL~~~~~~~~Ithg-G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 406 (471)
.++++.+.++.++. .++..+++-++.++. | ..++.||+++|+|+|+..... .....+++. ..|..++.
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~----- 329 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK----- 329 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-----
Confidence 34678888877654 488999985555552 3 468999999999999864321 233445534 57877775
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 012096 407 ESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~ 444 (471)
-+.+++.++|.++++|+ .....+.+++.+.++.+
T Consensus 330 ---~d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 ---GDIEALAEAIIELLNDP-KLLQKFSEAAYENAERY 363 (372)
T ss_pred ---CcHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHh
Confidence 38999999999999873 12234555555544433
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.70 E-value=0.017 Score=59.02 Aligned_cols=148 Identities=16% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh----CC-CcEEEEEcCCC--Ccccc-----ccCCCceEeeccchHHhhhhcccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN----SG-VRFFWVSRGDT--SWFKD-----GCVDRGIVVPWCDQLEVLCHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~----~~-~~vi~~~~~~~--~~~~~-----~~~~nv~v~~~~pq~~lL~~~~~~ 352 (471)
.++++.|.... ...+..+++|+.. .+ .++ +.+|..+ +.+.+ .+.++|.+.++.+..+++..+++
T Consensus 320 ~~il~vGrl~~--~Kg~~~li~A~~~l~~~~p~~~l-~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv- 395 (500)
T TIGR02918 320 FSIITASRLAK--EKHIDWLVKAVVKAKKSVPELTF-DIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYEL- 395 (500)
T ss_pred eEEEEEecccc--ccCHHHHHHHHHHHHhhCCCeEE-EEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCE-
Confidence 45566677653 2334445555543 22 332 3345432 11211 12456888888888889999998
Q ss_pred eeec---cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccC-HHHHHHHHHHHhcCCc
Q 012096 353 GFWT---HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVT-RDEITELVKRFMDLNN 427 (471)
Q Consensus 353 ~~It---hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~-~~~l~~~i~~~l~~~~ 427 (471)
+|. .-|. .++.||+++|+|+|+.-... .+...+++. .-|..++...+ ....-+ .++|+++|.++++++
T Consensus 396 -~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~-~~d~~~~~~~la~~I~~ll~~~- 468 (500)
T TIGR02918 396 -YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEE-EDDEDQIITALAEKIVEYFNSN- 468 (500)
T ss_pred -EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcc-ccchhHHHHHHHHHHHHHhChH-
Confidence 664 3444 58999999999999865421 234445433 45877763110 000012 788999999999531
Q ss_pred hhHHHHHHHHHHHHHHH
Q 012096 428 DERKAMSKRAREVQEIC 444 (471)
Q Consensus 428 ~~~~~~~~~a~~l~~~~ 444 (471)
....|.+++.+.++.+
T Consensus 469 -~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 469 -DIDAFHEYSYQIAEGF 484 (500)
T ss_pred -HHHHHHHHHHHHHHhc
Confidence 2355666666655554
No 118
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.67 E-value=0.019 Score=58.68 Aligned_cols=81 Identities=17% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCceEeeccchHHhhhhcccceeecc----CCcchHHHHHHcCCceecccccccccchhhhhhhh----h-cceeeeec
Q 012096 331 VDRGIVVPWCDQLEVLCHSSIGGFWTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVED----W-KIGWKVKK 401 (471)
Q Consensus 331 ~~nv~v~~~~pq~~lL~~~~~~~~Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~----l-G~G~~l~~ 401 (471)
.+||.+.+...-.+++..+++ +|.- |--.++.||+++|+|+|+.. .......+++. + ..|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 468888886666778888888 6543 23368999999999999853 33344444421 1 26777765
Q ss_pred CCCCCCCccCHHHHHHHHHHHhcC
Q 012096 402 PEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 402 ~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
-+.+++.++|.++++|
T Consensus 427 --------~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 --------ADPEALARAILRLLKD 442 (475)
T ss_pred --------CCHHHHHHHHHHHhcC
Confidence 3899999999999987
No 119
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.66 E-value=0.0008 Score=58.24 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHh-----CCCcEEEEEcCCC--C---ccc--cccCCCceEeeccc--h-HHhhh
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRN-----SGVRFFWVSRGDT--S---WFK--DGCVDRGIVVPWCD--Q-LEVLC 347 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~-----~~~~vi~~~~~~~--~---~~~--~~~~~nv~v~~~~p--q-~~lL~ 347 (471)
++.+++..|..... ..+..+++++.. .+.-.++.+|... . ... ....+++.+.++.+ + ..++.
T Consensus 14 ~~~~il~~g~~~~~--K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 91 (172)
T PF00534_consen 14 KKKIILFIGRLDPE--KGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYK 91 (172)
T ss_dssp TSEEEEEESESSGG--GTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHH
T ss_pred CCeEEEEEecCccc--cCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccc
Confidence 34677777777642 233444444433 2333444455221 0 010 12456899999998 3 34788
Q ss_pred hcccceeecc----CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHh
Q 012096 348 HSSIGGFWTH----CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 348 ~~~~~~~Ith----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
.+++ +|+. |...++.||+++|+|+|+. |...+...+.+. +.|..++. .+.+++.++|.+++
T Consensus 92 ~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~--------~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 92 SSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP--------NDIEELADAIEKLL 156 (172)
T ss_dssp HTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST--------TSHHHHHHHHHHHH
T ss_pred ccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC--------CCHHHHHHHHHHHH
Confidence 8888 7766 5567999999999999974 455566666644 56888876 39999999999999
Q ss_pred cC
Q 012096 424 DL 425 (471)
Q Consensus 424 ~~ 425 (471)
++
T Consensus 157 ~~ 158 (172)
T PF00534_consen 157 ND 158 (172)
T ss_dssp HH
T ss_pred CC
Confidence 87
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.61 E-value=0.0022 Score=64.08 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=91.0
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhC-----CCcEEEEEcCCCC---ccc-----cccCCCceEeeccchHH---hhhh
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNS-----GVRFFWVSRGDTS---WFK-----DGCVDRGIVVPWCDQLE---VLCH 348 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~-----~~~vi~~~~~~~~---~~~-----~~~~~nv~v~~~~pq~~---lL~~ 348 (471)
..+++.|...... .+..+++++.++ +..+.|.+-++.. .+. .....++.+.+|+++.+ ++..
T Consensus 231 ~~il~~Grl~~~K--g~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~ 308 (407)
T cd04946 231 LRIVSCSYLVPVK--RVDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKE 308 (407)
T ss_pred EEEEEeecccccc--CHHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhh
Confidence 5566677776422 233344444332 2466665443321 111 11234688899999764 4454
Q ss_pred cccceeeccC---C-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 349 SSIGGFWTHC---G-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 349 ~~~~~~Ithg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
+++.+||... | -.+++||+++|+|+|+... ......+.+. +.|+.++. . .+.+++.++|.++++
T Consensus 309 ~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~-~------~~~~~la~~I~~ll~ 376 (407)
T cd04946 309 NPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSK-D------PTPNELVSSLSKFID 376 (407)
T ss_pred cCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCC-C------CCHHHHHHHHHHHHh
Confidence 4444476543 3 3589999999999998543 3455566533 47888765 2 278999999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHH
Q 012096 425 LNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFL 462 (471)
Q Consensus 425 ~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (471)
| +..+ .++++..++.+.+.-+.....++|+
T Consensus 377 ~-----~~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 377 N-----EEEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred C-----HHHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 6 4332 2333444444444555556655554
No 121
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.39 E-value=0.0019 Score=62.63 Aligned_cols=111 Identities=16% Similarity=0.311 Sum_probs=78.4
Q ss_pred cCCCceEeeccchHHh---hhhcccceeeccC-------Cc------chHHHHHHcCCceecccccccccchhhhhhhhh
Q 012096 330 CVDRGIVVPWCDQLEV---LCHSSIGGFWTHC-------GL------NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDW 393 (471)
Q Consensus 330 ~~~nv~v~~~~pq~~l---L~~~~~~~~Ithg-------G~------~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~l 393 (471)
..+|+.+.+|+|+.++ |.. +.+++...- .+ +-+.+.+++|+|+|+. ++...+..+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~- 278 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN- 278 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-
Confidence 4568999999998765 333 444443321 11 1267789999999984 567788888877
Q ss_pred cceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHH
Q 012096 394 KIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLN 463 (471)
Q Consensus 394 G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~ 463 (471)
++|+.++ +.+++.+++.++..+ +...|++|+++++++++. |.--..++++++.
T Consensus 279 ~~G~~v~----------~~~el~~~l~~~~~~---~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 279 GLGFVVD----------SLEELPEIIDNITEE---EYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CceEEeC----------CHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 9999886 446888888876533 346899999999999985 5555555555543
No 122
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0017 Score=51.81 Aligned_cols=108 Identities=13% Similarity=0.043 Sum_probs=68.0
Q ss_pred EEEEeCCCcCCCHHHHHH--HHHHHHhCCCcEEEEEcCCCCccccccCCC-ceEeecc--c-hHHhhhhcccceeeccCC
Q 012096 286 LYVSLGSLWSVSSVQMDE--IVAGVRNSGVRFFWVSRGDTSWFKDGCVDR-GIVVPWC--D-QLEVLCHSSIGGFWTHCG 359 (471)
Q Consensus 286 I~vs~GS~~~~~~~~~~~--~~~al~~~~~~vi~~~~~~~~~~~~~~~~n-v~v~~~~--p-q~~lL~~~~~~~~IthgG 359 (471)
|||+-||....-...... +.+-.+.-..++|..+|... ..|-| .++.+|. + .+.+...+++ +|+|+|
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d-----~kpvagl~v~~F~~~~kiQsli~darI--VISHaG 74 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD-----IKPVAGLRVYGFDKEEKIQSLIHDARI--VISHAG 74 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC-----cccccccEEEeechHHHHHHHhhcceE--EEeccC
Confidence 789999984311111111 22222223367888887632 12223 3555553 3 4556666676 999999
Q ss_pred cchHHHHHHcCCceecccccc--------cccchhhhhhhhhcceeeeec
Q 012096 360 LNSTLEAAYAGVPMLTFPIMM--------DQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 360 ~~s~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~lG~G~~l~~ 401 (471)
.||+..++..++|.+++|--. .|-.-|..+.+. +.=+....
T Consensus 75 ~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~~sp 123 (161)
T COG5017 75 EGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVACSP 123 (161)
T ss_pred cchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEEEcC
Confidence 999999999999999999532 477788888744 55555443
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.35 E-value=0.0009 Score=55.31 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=67.1
Q ss_pred EEEEEeCCCcC-CCHHHHHH-HHHHHHhC-C-CcEEEEEcCCCCccccccCCCceEeeccch-HHhhhhcccceeecc--
Q 012096 285 VLYVSLGSLWS-VSSVQMDE-IVAGVRNS-G-VRFFWVSRGDTSWFKDGCVDRGIVVPWCDQ-LEVLCHSSIGGFWTH-- 357 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~-~~~al~~~-~-~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq-~~lL~~~~~~~~Ith-- 357 (471)
++++++|+... ...+.+.. ++..+.+. + ..++. ++..++.+.+...+|+.+.+|++. .+++..+++.+..+.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i-~G~~~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELII-IGNGPDELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEE-ECESS-HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEE-EeCCHHHHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 44555666653 23343333 44455433 3 34333 343333333222458999999874 448889998666542
Q ss_pred CC-cchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 358 CG-LNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 358 gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.| .+++.|++++|+|+|+.+.. ....++.. +.|..+.. +++++.++|.++++|
T Consensus 82 ~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~~~---------~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLVAN---------DPEELAEAIERLLND 135 (135)
T ss_dssp SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE-TT----------HHHHHHHHHHHHH-
T ss_pred CcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEECC---------CHHHHHHHHHHHhcC
Confidence 23 38999999999999998761 22233323 78877743 999999999999864
No 124
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.25 Score=49.75 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=79.1
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCC-Cccccc----------cCCCceEeeccc---hHHhhh
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDT-SWFKDG----------CVDRGIVVPWCD---QLEVLC 347 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~~----------~~~nv~v~~~~p---q~~lL~ 347 (471)
++.+||+|++......++.+..=+.-++..+--++|..++.. +++..+ ..+.+++.+-.| |.+=+.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 455999999999999999999888888999999999988732 122111 124566665555 455556
Q ss_pred hcccceeec---cCCcchHHHHHHcCCceecccccccccc--hhhhhhhhhcce
Q 012096 348 HSSIGGFWT---HCGLNSTLEAAYAGVPMLTFPIMMDQVP--NSKLIVEDWKIG 396 (471)
Q Consensus 348 ~~~~~~~It---hgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~lG~G 396 (471)
.+++ |.- .||..|..|+|+.|||+|..+ ++|+- |+..+...+|+-
T Consensus 508 iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~ 557 (620)
T COG3914 508 IADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIP 557 (620)
T ss_pred hhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCc
Confidence 6777 664 599999999999999999875 55654 555555343443
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.19 E-value=0.074 Score=51.17 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=42.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
||+|+-....|++.-..++.++|++.+.+.+|++++.+.+.+.++..
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~ 47 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH 47 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC
Confidence 58999999999999999999999997779999999999988888764
No 126
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.17 E-value=0.04 Score=49.36 Aligned_cols=49 Identities=22% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCCceEeeccch----HHhhhhcccceeeccCC----cchHHHHHHcCCceeccccccc
Q 012096 331 VDRGIVVPWCDQ----LEVLCHSSIGGFWTHCG----LNSTLEAAYAGVPMLTFPIMMD 381 (471)
Q Consensus 331 ~~nv~v~~~~pq----~~lL~~~~~~~~IthgG----~~s~~eal~~GvP~v~~P~~~D 381 (471)
..|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 468888888632 224444777 777765 6899999999999999876543
No 127
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.13 E-value=0.35 Score=49.42 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=47.0
Q ss_pred CCCceEeeccch-HHhhhhcccceeec---cCCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeec
Q 012096 331 VDRGIVVPWCDQ-LEVLCHSSIGGFWT---HCGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 331 ~~nv~v~~~~pq-~~lL~~~~~~~~It---hgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
.+++.+.+|..+ ..+|..+++ ||. +-|+ +++.||+++|+|+|+... ..+...+.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC
Confidence 467888888654 347889998 875 3454 699999999999997654 3455666644 67888775
No 128
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.13 E-value=0.0008 Score=51.72 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=52.9
Q ss_pred CchhccccccCCCCeEEEEEeCCCcCC---CH--HHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCce
Q 012096 270 PDNYFHWLDSQPDSSVLYVSLGSLWSV---SS--VQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGI 335 (471)
Q Consensus 270 ~~~~~~~l~~~~~~~~I~vs~GS~~~~---~~--~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~ 335 (471)
...+..|+...+.++.|+||+||.... .. ..+..++++++.++..+|.++..........+|+||+
T Consensus 27 ~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 27 PAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp SEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 455778999999999999999999864 22 4688899999999999999998766444467788875
No 129
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.12 E-value=0.11 Score=50.81 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=74.3
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeE-EEecCCCCCCchhhhhcHHH
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIR-FETIPNVIPSELVRARDFLA 88 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~ip~~~~~~~~~~~~~~~ 88 (471)
+.++||+|+-....|++.-..++.++|++...+.+|++++.+.+.+.++... .+. +..++..- .....
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----~id~vi~~~~~~-------~~~~~ 71 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP----EINALYGIKNKK-------AGASE 71 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC----CceEEEEecccc-------ccHHH
Confidence 4568999999999999999999999999987899999999998888776542 332 22333110 00000
Q ss_pred HHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEE
Q 012096 89 FVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~ 141 (471)
.+. .+..++++++.. +||++|.-........++...+.|..+.
T Consensus 72 ~~~--------~~~~l~~~lr~~--~yD~vidl~~~~~s~ll~~l~~a~~rig 114 (352)
T PRK10422 72 KIK--------NFFSLIKVLRAN--KYDLIVNLTDQWMVALLVRLLNARVKIS 114 (352)
T ss_pred HHH--------HHHHHHHHHhhC--CCCEEEEcccchHHHHHHHHhCCCeEEe
Confidence 001 123344555543 7999996654444556677778887663
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.013 Score=58.84 Aligned_cols=148 Identities=18% Similarity=0.293 Sum_probs=93.9
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCC---cccc------ccCCCceEeeccchHHh-----hh
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTS---WFKD------GCVDRGIVVPWCDQLEV-----LC 347 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~---~~~~------~~~~nv~v~~~~pq~~l-----L~ 347 (471)
++.+||++|--.-..++..++.-++-+...+..++|....... .+.. -.|+.+.+.+-+.-.+. |.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~La 836 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLA 836 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhh
Confidence 4459999998888889999999999999999999999876531 1111 12455666555443222 22
Q ss_pred hcccceeeccCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCc
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNN 427 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 427 (471)
.-.+.-+.|. |..|.++.|+.|||||.+|.-.--...|..+--.+|+|-.+.+ +.++-.+.-.++-+|
T Consensus 837 Dv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---------~~eEY~~iaV~Latd-- 904 (966)
T KOG4626|consen 837 DVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---------NREEYVQIAVRLATD-- 904 (966)
T ss_pred hhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---------hHHHHHHHHHHhhcC--
Confidence 2222224554 7889999999999999999865444444444446688876665 555544333345444
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 012096 428 DERKAMSKRAREVQEICQEA 447 (471)
Q Consensus 428 ~~~~~~~~~a~~l~~~~~~~ 447 (471)
..| .++++.+++++
T Consensus 905 ---~~~---L~~lr~~l~~~ 918 (966)
T KOG4626|consen 905 ---KEY---LKKLRAKLRKA 918 (966)
T ss_pred ---HHH---HHHHHHHHHHH
Confidence 333 34445555544
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.67 E-value=0.019 Score=55.22 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=56.1
Q ss_pred cCCCceEe---eccchH---Hhhhhcccceeecc---CCc-chHHHHHHcCCceecccc------cccc------cchhh
Q 012096 330 CVDRGIVV---PWCDQL---EVLCHSSIGGFWTH---CGL-NSTLEAAYAGVPMLTFPI------MMDQ------VPNSK 387 (471)
Q Consensus 330 ~~~nv~v~---~~~pq~---~lL~~~~~~~~Ith---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~na~ 387 (471)
.++++.+. +++++. .++..+++ ||.- -|. .++.||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 45688887 455543 57888888 7753 344 578999999999998633 2332 22232
Q ss_pred hhh--hhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 388 LIV--EDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 388 ~v~--~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
-.. +. |.|..++. .++++++++|.++++.
T Consensus 277 ~~~~~~~-g~g~~~~~--------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEH-GQKWKIHK--------FQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCccc-CceeeecC--------CCHHHHHHHHHHHHhc
Confidence 222 23 56666654 5999999999998544
No 132
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.66 E-value=0.22 Score=48.58 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=73.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEE-EecCCCCCCchhhhhcHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRF-ETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
|||+|+-..+.|++.-...+.++|++...+.+|++++.+.+.+.++... .+.- ..++.. ..... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P----~vd~vi~~~~~--------~~~~~-~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP----EVNEAIPMPLG--------HGALE-I- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC----ccCEEEecccc--------cchhh-h-
Confidence 5899999999999999999999999987899999999998888887652 2322 222211 00000 0
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEE
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~ 140 (471)
.....+.++++.. +||++|.=....-...++...|+|.-+
T Consensus 67 -------~~~~~l~~~lr~~--~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 -------GERRRLGHSLREK--RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred -------HHHHHHHHHHHhc--CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1123345555543 799999765555566677888888766
No 133
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.34 Score=46.89 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=75.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
||+|+++-....|++.-.+++.+.|++...+.++++++.+.+.+.+.... .+.-...-.. ....
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p----~I~~vi~~~~------~~~~------ 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNP----EIDKVIIIDK------KKKG------ 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcCh----Hhhhhccccc------cccc------
Confidence 57999999999999999999999999977789999999998888776542 2221111000 0001
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEe
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFW 142 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~ 142 (471)
..-.....+.+.++.. ++|+||.=....-...++...++|.-.-+
T Consensus 65 ----~~~~~~~~l~~~lr~~--~yD~vidl~~~~ksa~l~~~~~~~~r~g~ 109 (334)
T COG0859 65 ----LGLKERLALLRTLRKE--RYDAVIDLQGLLKSALLALLLGIPFRIGF 109 (334)
T ss_pred ----cchHHHHHHHHHhhcc--CCCEEEECcccHHHHHHHHHhCCCccccc
Confidence 0111234455555542 69999987777667777888888887743
No 134
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.31 E-value=0.28 Score=46.12 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=68.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCe-EEEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNI-RFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
||+++-..+.|++.-..++.++|++...+-+|++++.+.+.+.++... .+ ++..++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p----~id~v~~~~~~~-----~~~~~------ 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP----EVDRVIVLPKKH-----GKLGL------ 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC----ccCEEEEcCCcc-----cccch------
Confidence 589999999999999999999999976679999999998888877652 22 223333110 00011
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEE
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~ 140 (471)
..+..++.+++. .++|+++--........++...+++...
T Consensus 66 ------~~~~~~~~~l~~--~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 ------GARRRLARALRR--RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred ------HHHHHHHHHHhh--cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 112344455544 2699999766554444455666666554
No 135
>PRK14098 glycogen synthase; Provisional
Probab=96.31 E-value=0.15 Score=52.15 Aligned_cols=126 Identities=8% Similarity=0.048 Sum_probs=73.9
Q ss_pred EEEEEeCCCcCC-CHHHHHHHHHHHHhCCCcEEEEEcCCC---Ccc---ccccCCCceEeeccchH---Hhhhhccccee
Q 012096 285 VLYVSLGSLWSV-SSVQMDEIVAGVRNSGVRFFWVSRGDT---SWF---KDGCVDRGIVVPWCDQL---EVLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~~-~~~~~~~~~~al~~~~~~vi~~~~~~~---~~~---~~~~~~nv~v~~~~pq~---~lL~~~~~~~~ 354 (471)
.+++..|..... ..+.+...+..+.+.+.+++..-.++. +.+ ....++++.+..+.+.. .+++.+++ |
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi--~ 385 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDM--L 385 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCE--E
Confidence 455566666532 233333333333334566665433321 111 12346788888888764 47888888 6
Q ss_pred eccC---Cc-chHHHHHHcCCceecccccc--cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHh
Q 012096 355 WTHC---GL-NSTLEAAYAGVPMLTFPIMM--DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 355 Ithg---G~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
+.-. |. .+.+||+++|+|.|+....+ |.-.+ ..++. +.|...+. -+++.+.++|.+++
T Consensus 386 l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l~~~--------~d~~~la~ai~~~l 449 (489)
T PRK14098 386 LMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFIFHD--------YTPEALVAKLGEAL 449 (489)
T ss_pred EeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeEeCC--------CCHHHHHHHHHHHH
Confidence 6432 22 37789999999888766432 22111 11123 67887765 38899999999876
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.22 E-value=0.06 Score=44.54 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=63.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESV 93 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~ 93 (471)
||++++.....| ...+++.|.+ +||+|++++.....+.... ..++.+..++-... .....+. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~--~g~~V~ii~~~~~~~~~~~----~~~i~~~~~~~~~k-------~~~~~~~-~ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKK--RGYDVHIITPRNDYEKYEI----IEGIKVIRLPSPRK-------SPLNYIK-Y 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHH--CCCEEEEEEcCCCchhhhH----hCCeEEEEecCCCC-------ccHHHHH-H
Confidence 577777766555 5688999999 9999999999655433321 12778887753311 1222222 1
Q ss_pred HHhchHHHHHHHHHhhhcCCCceEEEEcCchh---hHHHHHhhcC-CCeEEEe
Q 012096 94 STKMEAPFEKVLDFLQVEAPVVSAIIVDTFLA---WAVDVGNRRN-IPVASFW 142 (471)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~---~~~~~A~~lg-IP~v~~~ 142 (471)
. .+..++++. +||+|.+..... .+..++...+ +|++...
T Consensus 64 ~-----~l~k~ik~~-----~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 64 F-----RLRKIIKKE-----KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred H-----HHHHHhccC-----CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1 234455553 699998877553 2334567788 8998753
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.18 E-value=0.94 Score=43.83 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=70.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeE-EEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIR-FETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~-~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
||+|+-..+.|++.-..++.++|++...+.+|++++.+.+.+.++... .+. +..++.. . ....+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----~id~v~~~~~~--~------~~~~~--- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP----EIRQAIDMPLG--H------GALEL--- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc----hhceeeecCCc--c------cchhh---
Confidence 589999999999999999999999977799999999988877777542 222 2222211 0 00000
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEE
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~ 140 (471)
.....+.++++. .+||++|.-........++...++|.-+
T Consensus 66 ------~~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 ------TERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ------hHHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011234455554 2799999876555566677777888655
No 138
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.11 E-value=0.63 Score=45.25 Aligned_cols=108 Identities=10% Similarity=0.023 Sum_probs=72.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCe-EEEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNI-RFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
||+|+-....|++.-..++.++|++...+.+|++++.+.+.+.++... .+ ++..++.... ......+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p----~vd~vi~~~~~~~-----~~~~~~~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENP----DINALYGLDRKKA-----KAGERKLA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCC----CccEEEEeChhhh-----cchHHHHH--
Confidence 589999999999999999999999987899999999998888777642 33 2333331110 00000000
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEE
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~ 141 (471)
....++++++. .+||++|.-........++...|+|.-+-
T Consensus 70 -------~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 70 -------NQFHLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred -------HHHHHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 11223444544 27999996655556677888889997664
No 139
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.99 E-value=1.6 Score=41.96 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=43.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
|||+|+-..+.|++.-..++.+.|++...+.+|++++.+.+.+.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~ 48 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWH 48 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcC
Confidence 589999999999999999999999997779999999999887776544
No 140
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.91 E-value=0.072 Score=45.65 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=57.9
Q ss_pred CCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEE
Q 012096 41 PNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIV 120 (471)
Q Consensus 41 rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~ 120 (471)
+||+|+++|........ . |++...+........ ...-....++....... .+...+.+|++++..||+||.
T Consensus 2 ~gh~v~fl~~~~~~~~~--~-----GV~~~~y~~~~~~~~-~~~~~~~~~e~~~~rg~-av~~a~~~L~~~Gf~PDvI~~ 72 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPIP--P-----GVRVVRYRPPRGPTP-GTHPYVRDFEAAVLRGQ-AVARAARQLRAQGFVPDVIIA 72 (171)
T ss_pred CCCEEEEEecCCCCCCC--C-----CcEEEEeCCCCCCCC-CCCcccccHHHHHHHHH-HHHHHHHHHHHcCCCCCEEEE
Confidence 79999999965443332 2 667766653111111 11112222333322222 234445556666688999999
Q ss_pred cCchhhHHHHHhhc-CCCeEEEecc
Q 012096 121 DTFLAWAVDVGNRR-NIPVASFWSM 144 (471)
Q Consensus 121 D~~~~~~~~~A~~l-gIP~v~~~~~ 144 (471)
......++.+-+.+ ++|.+.++=.
T Consensus 73 H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 73 HPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred cCCcchhhhHHHhCCCCcEEEEEEE
Confidence 98888889999999 9999997544
No 141
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.86 E-value=0.034 Score=46.76 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHH
Q 012096 27 NPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLD 106 (471)
Q Consensus 27 ~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 106 (471)
.-+..|+++|.+ +||+|+++++......-+.. ..++.+..+|-...... .....++ ..+..++.
T Consensus 5 ~~~~~l~~~L~~--~G~~V~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~l~ 68 (160)
T PF13579_consen 5 RYVRELARALAA--RGHEVTVVTPQPDPEDDEEE---EDGVRVHRLPLPRRPWP---LRLLRFL--------RRLRRLLA 68 (160)
T ss_dssp HHHHHHHHHHHH--TT-EEEEEEE---GGG-SEE---ETTEEEEEE--S-SSSG---GGHCCHH--------HHHHHHCH
T ss_pred HHHHHHHHHHHH--CCCEEEEEecCCCCcccccc---cCCceEEeccCCccchh---hhhHHHH--------HHHHHHHh
Confidence 346789999999 99999999976555432111 12778777762222110 0111111 11233331
Q ss_pred HhhhcCCCceEEEEcCch-hhHHHHHh-hcCCCeEEEec
Q 012096 107 FLQVEAPVVSAIIVDTFL-AWAVDVGN-RRNIPVASFWS 143 (471)
Q Consensus 107 ~l~~~~~~~D~vI~D~~~-~~~~~~A~-~lgIP~v~~~~ 143 (471)
. .. .+||+|.+.... .....+++ ..++|+|....
T Consensus 69 ~-~~--~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 69 A-RR--ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp H-CT-----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred h-hc--cCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 1 11 379999988744 23333444 78999999643
No 142
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.85 E-value=1.2 Score=41.50 Aligned_cols=106 Identities=12% Similarity=0.040 Sum_probs=67.4
Q ss_pred CCccChHHHHHHHHHHHhcCCCcEEEEEECc--cchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHH-HHHHHHHHhc
Q 012096 21 PGRGHINPMMNLCKLLVSRNPNVFITFVVTE--EWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFL-AFVESVSTKM 97 (471)
Q Consensus 21 ~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~-~~~~~~~~~~ 97 (471)
+-.-|+..+-.+..+|.+ +||+|.+-+-. ...+.+... |+.+..+..-. ...+. .++..+.+.
T Consensus 8 ~n~~hvhfFk~lI~elek--kG~ev~iT~rd~~~v~~LLd~y-----gf~~~~Igk~g------~~tl~~Kl~~~~eR~- 73 (346)
T COG1817 8 GNPPHVHFFKNLIWELEK--KGHEVLITCRDFGVVTELLDLY-----GFPYKSIGKHG------GVTLKEKLLESAERV- 73 (346)
T ss_pred CCcchhhHHHHHHHHHHh--CCeEEEEEEeecCcHHHHHHHh-----CCCeEeecccC------CccHHHHHHHHHHHH-
Confidence 344688899999999999 99999876643 233444445 66666664211 01222 222222111
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHH
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
..+-+++.+. +||+.|. -.++.+..+|.-+|+|.+++.-..-+
T Consensus 74 -~~L~ki~~~~-----kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 74 -YKLSKIIAEF-----KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred -HHHHHHHhhc-----CCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 1233444443 6999999 56777889999999999998655443
No 143
>PHA01630 putative group 1 glycosyl transferase
Probab=95.83 E-value=0.36 Score=46.66 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=47.4
Q ss_pred ccchHH---hhhhcccceee--cc-CC-cchHHHHHHcCCceecccccc--ccc---chhhhhhhh----------hcce
Q 012096 339 WCDQLE---VLCHSSIGGFW--TH-CG-LNSTLEAAYAGVPMLTFPIMM--DQV---PNSKLIVED----------WKIG 396 (471)
Q Consensus 339 ~~pq~~---lL~~~~~~~~I--th-gG-~~s~~eal~~GvP~v~~P~~~--DQ~---~na~~v~~~----------lG~G 396 (471)
++|+.+ ++..+++ || ++ .| -.++.||+++|+|+|+.-..+ |.- .|.-.+... -++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 366443 6888888 65 33 33 358999999999999976432 322 222111100 0356
Q ss_pred eeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 397 WKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
..++. +.+++.+++.+++.|
T Consensus 275 ~~v~~---------~~~~~~~~ii~~l~~ 294 (331)
T PHA01630 275 YFLDP---------DIEDAYQKLLEALAN 294 (331)
T ss_pred cccCC---------CHHHHHHHHHHHHhC
Confidence 65554 678888888888876
No 144
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.02 E-value=0.18 Score=38.37 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred cCCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHH
Q 012096 357 HCGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKR 436 (471)
Q Consensus 357 hgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~ 436 (471)
+|-..-+.|++++|+|+|.-+. ......+. . |..+..-. +.+++.++|..+++|+ ...++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~-~-~~~~~~~~---------~~~el~~~i~~ll~~~----~~~~~i 69 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFE-D-GEHIITYN---------DPEELAEKIEYLLENP----EERRRI 69 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcC-C-CCeEEEEC---------CHHHHHHHHHHHHCCH----HHHHHH
Confidence 4445689999999999998754 22222222 2 33233322 8999999999999983 233333
Q ss_pred HHHHHHHHHHhHhcCCCcHHHHHHHH
Q 012096 437 AREVQEICQEAVAENGSSITNFDAFL 462 (471)
Q Consensus 437 a~~l~~~~~~~~~~~g~~~~~~~~~~ 462 (471)
+++..+. +...-+....+++++
T Consensus 70 a~~a~~~----v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 70 AKNARER----VLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHH----HHHhCCHHHHHHHHH
Confidence 3333333 334667777776665
No 145
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.53 E-value=0.22 Score=43.92 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=63.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCC----chhhhhcHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPS----ELVRARDFLA 88 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~----~~~~~~~~~~ 88 (471)
||||+.-=-+. +---+..|+++|++ .||+|+++.|.....-....-.....++......+... ...-.+.+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~--~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaD 77 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSA--LGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPAD 77 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTT--TSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--cCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHH
Confidence 57777665554 55567889999977 78999999998766544332222334555333111110 1111122333
Q ss_pred HHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEecch
Q 012096 89 FVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~~~ 145 (471)
-.... +..++.+ .+||+||+... + ..++.-|..+|||.|.++...
T Consensus 78 cv~~a-------l~~~~~~-----~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~ 135 (196)
T PF01975_consen 78 CVKLA-------LDGLLPD-----KKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDS 135 (196)
T ss_dssp HHHHH-------HHCTSTT-----SS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEES
T ss_pred HHHHH-------HHhhhcc-----CCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEeccc
Confidence 33222 2222222 24999997532 2 344556677899999986644
No 146
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.01 E-value=0.27 Score=42.33 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=57.0
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch--hhhc---CCCCCCCCeEEEecCCCCCCchhhhhcHHHHH
Q 012096 16 VALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL--SFIG---SGHGNHNNIRFETIPNVIPSELVRARDFLAFV 90 (471)
Q Consensus 16 l~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~--~~~~---~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 90 (471)
+++. ++.||+.=++.|.+.+......++..+++..+.. +.+. +... ....+..+|................+
T Consensus 2 l~v~-gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~--~~~~~~~~~r~r~v~q~~~~~~~~~l 78 (170)
T PF08660_consen 2 LVVL-GSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSS--KRHKILEIPRAREVGQSYLTSIFTTL 78 (170)
T ss_pred EEEE-cCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhcc--ccceeeccceEEEechhhHhhHHHHH
Confidence 3444 4459999999999999332134555555544322 2111 1100 01134444422111111111222222
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhc------CCCeEEE
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRR------NIPVASF 141 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~l------gIP~v~~ 141 (471)
..+.. .+.-+.+ .+||+||+..-. .+.+.+|+.+ |.+.|.+
T Consensus 79 ~~~~~----~~~il~r------~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 79 RAFLQ----SLRILRR------ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHH----HHHHHHH------hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 22211 1222222 279999998866 5666788889 9999986
No 147
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.61 E-value=0.62 Score=47.16 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=69.4
Q ss_pred eccchHH---hhhhcccceeec---cCCc-chHHHHHHcCCc----eecccccccccchhhhhhhhhcceeeeecCCCCC
Q 012096 338 PWCDQLE---VLCHSSIGGFWT---HCGL-NSTLEAAYAGVP----MLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGS 406 (471)
Q Consensus 338 ~~~pq~~---lL~~~~~~~~It---hgG~-~s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~ 406 (471)
+.+++.+ ++..+++ |+. +=|+ .+..||+++|+| +|+--+.+ .+..+ +-|+.++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC-----
Confidence 4455544 5788888 775 3476 478899999999 55543332 22222 34666665
Q ss_pred CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 407 ESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
.+.++++++|.++|+++. ++.+++.+++.+...+ -+...-+++++++|.
T Consensus 407 ---~d~~~lA~aI~~aL~~~~---~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ---YDIDGMADAIARALTMPL---EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred ---CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 489999999999998643 4566666666666553 477777888887764
No 148
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.39 E-value=1.8 Score=41.36 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.5
Q ss_pred chHHhhhhcccceeeccCC-cchHHHHHHcCCceecccccc
Q 012096 341 DQLEVLCHSSIGGFWTHCG-LNSTLEAAYAGVPMLTFPIMM 380 (471)
Q Consensus 341 pq~~lL~~~~~~~~IthgG-~~s~~eal~~GvP~v~~P~~~ 380 (471)
|+..+|..++. +|.-+. .+.+.||+..|+|+.++|+..
T Consensus 221 Py~~~La~ad~--i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA--IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE--EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67888999988 666666 488999999999999999876
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=93.39 E-value=2.7 Score=45.87 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCCceEeeccchH---Hhhhhcccceeecc---CC-cchHHHHHHcCCceecccccc--cccch--hhhhhhhhcceeee
Q 012096 331 VDRGIVVPWCDQL---EVLCHSSIGGFWTH---CG-LNSTLEAAYAGVPMLTFPIMM--DQVPN--SKLIVEDWKIGWKV 399 (471)
Q Consensus 331 ~~nv~v~~~~pq~---~lL~~~~~~~~Ith---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~lG~G~~l 399 (471)
.++|.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |--.+ ...+...-+-|...
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888764 47888888 7753 22 248999999999998875533 32211 11111111467777
Q ss_pred ecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 400 KKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
+. .+++.+.++|.+++.
T Consensus 914 ~~--------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT--------PDEQGLNSALERAFN 930 (977)
T ss_pred cC--------CCHHHHHHHHHHHHH
Confidence 65 388899999988764
No 150
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.93 E-value=7.3 Score=35.61 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=45.5
Q ss_pred HHHHHHhCCCcEEEEEcCCC-Cc----cccccCC-CceE-----eeccchHHhhhhcccceeeccCC-cchHHHHHHcCC
Q 012096 304 IVAGVRNSGVRFFWVSRGDT-SW----FKDGCVD-RGIV-----VPWCDQLEVLCHSSIGGFWTHCG-LNSTLEAAYAGV 371 (471)
Q Consensus 304 ~~~al~~~~~~vi~~~~~~~-~~----~~~~~~~-nv~v-----~~~~pq~~lL~~~~~~~~IthgG-~~s~~eal~~Gv 371 (471)
+.+.+++.+..|+.+.+... +. +.+++.. -+.+ .++=|+.+.|+.++. +|.-.. .+...||++.|+
T Consensus 189 l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgk 266 (329)
T COG3660 189 LVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMCSEAASTGK 266 (329)
T ss_pred HHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhhHHHhccCC
Confidence 55556667778887776542 11 1111111 1222 244589999999988 777665 488999999999
Q ss_pred ceecc
Q 012096 372 PMLTF 376 (471)
Q Consensus 372 P~v~~ 376 (471)
|+.++
T Consensus 267 Pv~~~ 271 (329)
T COG3660 267 PVFIL 271 (329)
T ss_pred CeEEE
Confidence 99664
No 151
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=92.82 E-value=2.1 Score=39.40 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=62.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC-CCCCCchhhhhcHHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP-NVIPSELVRARDFLAFV 90 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~~~~~~~~~~~~~~~~ 90 (471)
+||||+.-=-+. |.--+.+|+++|++ .| +|+++.|.....-....-.....+++..+. +.......-.+.+....
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~--~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaDCV 80 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKK--IG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVDCI 80 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHh--CC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHHHH
Confidence 468887654332 33457788999998 78 799999876554443322223355655553 11100111112222222
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
... +..++. .+||+||+... + ..++.-|..+|||.++++.
T Consensus 81 ~la-------l~~~~~------~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 81 KVA-------LSHILP------EKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHH-------HHhhcC------CCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 221 222221 26999997532 2 4455567778999999864
No 152
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=9.6 Score=36.34 Aligned_cols=125 Identities=12% Similarity=0.027 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc---hhhhcCCCCCCCCeEEEecCCCCCCchhhhhcH
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW---LSFIGSGHGNHNNIRFETIPNVIPSELVRARDF 86 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~---~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 86 (471)
.++.+++++.-+--||--.+--=|..|++ .|.+|.+++.-+. .+.++ +++++++.+|....... ..+-+
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~--~gf~VdliGy~~s~p~e~l~~-----hprI~ih~m~~l~~~~~-~p~~~ 81 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAK--LGFQVDLIGYVESIPLEELLN-----HPRIRIHGMPNLPFLQG-GPRVL 81 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHH--cCCeEEEEEecCCCChHHHhc-----CCceEEEeCCCCcccCC-Cchhh
Confidence 34568888888888998888888999999 9999999986433 33333 34899999984332111 11222
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhh----cCCCeEEEecchHHH
Q 012096 87 LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNR----RNIPVASFWSMSASL 148 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~----lgIP~v~~~~~~~~~ 148 (471)
.-.++.+...+ ..+..++. + +++|.+++-.-- ...+.++.. .|..+++=|....+.
T Consensus 82 ~l~lKvf~Qfl-~Ll~aL~~-~----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 82 FLPLKVFWQFL-SLLWALFV-L----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhHHHHHHHHH-HHHHHHHh-c----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 23333333222 11223333 2 379999876532 444444444 478888877766664
No 153
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=92.55 E-value=2.9 Score=41.96 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=84.3
Q ss_pred CCeEEEEEeCCCcCCCHHHHHHHHHHHHhCC-CcEEEEEcCC-CCccc--cccCCCceEe-eccc-h-HHhhhhccccee
Q 012096 282 DSSVLYVSLGSLWSVSSVQMDEIVAGVRNSG-VRFFWVSRGD-TSWFK--DGCVDRGIVV-PWCD-Q-LEVLCHSSIGGF 354 (471)
Q Consensus 282 ~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~-~~vi~~~~~~-~~~~~--~~~~~nv~v~-~~~p-q-~~lL~~~~~~~~ 354 (471)
.+.++++| ..+.+..+...++++| +++=...+.+ ...+. ... +|+.+. ++.+ + .+++..|++-+-
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEE
Confidence 33477776 2566666766666666 5554444443 12221 223 455554 6677 3 459999999999
Q ss_pred eccCCc--chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHH
Q 012096 355 WTHCGL--NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKA 432 (471)
Q Consensus 355 IthgG~--~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (471)
|+||.- .++.||+.+|+|++..=..... ...+. . |-..+. -+.+++.++|.++|+++ +.
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~---~-g~l~~~--------~~~~~m~~~i~~lL~d~----~~ 414 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIA---S-ENIFEH--------NEVDQLISKLKDLLNDP----NQ 414 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCC---ccccc---C-CceecC--------CCHHHHHHHHHHHhcCH----HH
Confidence 999764 7999999999999987543211 12222 1 444544 27899999999999882 24
Q ss_pred HHHHHHHHHH
Q 012096 433 MSKRAREVQE 442 (471)
Q Consensus 433 ~~~~a~~l~~ 442 (471)
++++..+-++
T Consensus 415 ~~~~~~~q~~ 424 (438)
T TIGR02919 415 FRELLEQQRE 424 (438)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 154
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.92 E-value=4.6 Score=41.63 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCceEeeccc--hH-HhhhhcccceeeccC---CcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCC
Q 012096 332 DRGIVVPWCD--QL-EVLCHSSIGGFWTHC---GLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIG 405 (471)
Q Consensus 332 ~nv~v~~~~p--q~-~lL~~~~~~~~Ithg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~ 405 (471)
..|.+.++.+ +. .++..+.+ +|.=+ |.++..||+.+|+|+| .......|++. .=|..+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li-~---- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII-D---- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe-C----
Confidence 4677778877 32 36666666 87665 6779999999999999 44445556533 446666 3
Q ss_pred CCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 012096 406 SESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 406 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~ 444 (471)
+.++|.++|..+|.+.. ....+...|-+.+..+
T Consensus 474 -----d~~~l~~al~~~L~~~~-~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 -----DISELLKALDYYLDNLK-NWNYSLAYSIKLIDDY 506 (519)
T ss_pred -----CHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHh
Confidence 78899999999998721 1123444444444444
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.37 E-value=0.68 Score=42.86 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCceE-eeccchHHhhhhcccceeeccCCcchHHHHHHcCCceecccccccccc--hhhhhhhhhcceeeeecCCCCCCC
Q 012096 332 DRGIV-VPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTFPIMMDQVP--NSKLIVEDWKIGWKVKKPEIGSES 408 (471)
Q Consensus 332 ~nv~v-~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~v~~~lG~G~~l~~~~~~~~~ 408 (471)
+|..+ ..|-...++|.++++ .|--.|- .+-.++-.|+|+|.+|-.+-|+. -|.+=.+-||+.+.+-.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------- 363 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------- 363 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-------
Confidence 35554 366667788888888 6655443 34456889999999999998875 57777777788888776
Q ss_pred ccCHHHHHHHHHH-HhcCCchhHHHHHHHHH
Q 012096 409 LVTRDEITELVKR-FMDLNNDERKAMSKRAR 438 (471)
Q Consensus 409 ~~~~~~l~~~i~~-~l~~~~~~~~~~~~~a~ 438 (471)
.+.+..+.+.+ +|.| +.+..+++
T Consensus 364 --~~aq~a~~~~q~ll~d-----p~r~~air 387 (412)
T COG4370 364 --PEAQAAAQAVQELLGD-----PQRLTAIR 387 (412)
T ss_pred --CchhhHHHHHHHHhcC-----hHHHHHHH
Confidence 44555555555 8988 66666555
No 156
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.34 E-value=1.1 Score=37.68 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPN 74 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 74 (471)
.+|||++...|+.|-..-++.+++.|.+ +|+.|-=+.+++-.+--... ||+...+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~--~g~kvgGf~t~EVR~gGkR~-----GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE--KGYKVGGFITPEVREGGKRI-----GFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh--cCceeeeEEeeeeecCCeEe-----eeEEEEccC
Confidence 3589999999999999999999999999 99999866666544332222 677777763
No 157
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.10 E-value=1.8 Score=36.67 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=50.2
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHH
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPF 101 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (471)
..|=-.-+..|+++|++ +||+|+++++.......... .......+.... ......+... ..+
T Consensus 11 ~GG~e~~~~~l~~~l~~--~G~~v~v~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~~~~~~~~~-----~~~ 72 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK--RGHEVTVVSPGVKDPIEEEL-----VKIFVKIPYPIR------KRFLRSFFFM-----RRL 72 (177)
T ss_dssp SSHHHHHHHHHHHHHHH--TT-EEEEEESS-TTS-SSTE-----EEE---TT-SST------SS--HHHHHH-----HHH
T ss_pred CChHHHHHHHHHHHHHH--CCCEEEEEEcCCCccchhhc-----cceeeeeecccc------cccchhHHHH-----HHH
Confidence 34667779999999999 99999999876433332220 111111110110 1111111111 124
Q ss_pred HHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEEecchH
Q 012096 102 EKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 102 ~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
..++++. +||+|-+.... .+....+-. ++|.+.......
T Consensus 73 ~~~i~~~-----~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 73 RRLIKKE-----KPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPY 112 (177)
T ss_dssp HHHHHHH-----T-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH
T ss_pred HHHHHHc-----CCCeEEecccchhHHHHHhcc-CCCEEEEeCCCc
Confidence 4455554 59999666544 333333333 999999765544
No 158
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.91 E-value=0.91 Score=46.12 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=63.0
Q ss_pred eeccchHH---hhhhcccceeec---cCCc-chHHHHHHcCCc----eecccccc--cccchhhhhhhhhcceeeeecCC
Q 012096 337 VPWCDQLE---VLCHSSIGGFWT---HCGL-NSTLEAAYAGVP----MLTFPIMM--DQVPNSKLIVEDWKIGWKVKKPE 403 (471)
Q Consensus 337 ~~~~pq~~---lL~~~~~~~~It---hgG~-~s~~eal~~GvP----~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~~~ 403 (471)
.+++++.+ ++..+++ ||. +-|+ .++.||+++|+| +|+--..+ ++ . .-|+.++.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~----~~g~lv~p-- 411 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------L----SGALLVNP-- 411 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh------c----CCCEEECC--
Confidence 36667544 6888888 663 3565 477999999999 44432221 22 1 34666665
Q ss_pred CCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHH
Q 012096 404 IGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDI 465 (471)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 465 (471)
.+.++++++|.++++++. ...+++.++..+... .-+...-+++++++|
T Consensus 412 ------~d~~~la~ai~~~l~~~~---~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ------YDIDEVADAIHRALTMPL---EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ------CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 389999999999998742 233333333333333 346677777777765
No 159
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=90.17 E-value=5.3 Score=36.70 Aligned_cols=113 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC--CCCCCchhhhhcHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP--NVIPSELVRARDFLAFV 90 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~~~~~~~~~~~~~~~~ 90 (471)
||||+.-=-+. |---+.+|+++|++ +|+|+++.|.....-....-.....++...+. ++. ....-.+.+....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~---~~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~~~-~~y~v~GTPaDcV 75 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE---KHEVFVVAPDKERSATGHAITIRVPLWAKKVFISERF-VAYATTGTPADCV 75 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh---CCcEEEEccCCCCccccccccCCCCceEEEeecCCCc-cEEEECCcHHHHH
Confidence 45666544332 33447788899966 57999999976554443322212234444432 111 0111112222222
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
... +..++. .+||+||+... + ..++.-|..+|||.+.++.
T Consensus 76 ~la-------l~~~~~------~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 76 KLG-------YDVIMD------KKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred HHH-------HHhhcc------CCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 222 222221 26999997532 2 3455556778999999865
No 160
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=89.86 E-value=5.9 Score=36.44 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=58.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC-CCCC-CchhhhhcHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP-NVIP-SELVRARDFLAFV 90 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~~~-~~~~~~~~~~~~~ 90 (471)
||||+.-=-+. |---+.+|+++|++ +|+|+++.|...+.-....-.....++...+. ++.. ....-.+.+....
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~---~~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~v~GTPaDcV 76 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK---YHEVIIVAPENQRSASSHSITIYEPIIIKEVKLEGINSKAYSISGTPADCV 76 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh---CCcEEEEccCCCCccccccccCCCCeEEEeeccCCCCccEEEECCcHHHHH
Confidence 46666543332 22337888899976 57999999876554332221122244444443 1100 0011112222222
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
... +..++. .+||+||+... + ..++.-|..+|||.++++.
T Consensus 77 ~la-------l~~l~~------~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 77 RVA-------LDKLVP------DNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred HHH-------HHHhcC------CCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 221 222221 26999997532 2 4455567778999999864
No 161
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=89.61 E-value=6.3 Score=36.21 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=60.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
||||+.-=-+. |.--+.+|+++|++ . |+|+++.|.....-+...-.....+++..+.+.. ..-.+.+......
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~--~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~---~~v~GTPaDcV~~ 73 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALRE--L-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNGF---YAVDGTPTDCVHL 73 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHh--C-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCCe---EEECCcHHHHHHH
Confidence 35555543332 34447888999999 7 7999999976554443332223345555543111 1111122222222
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
. +..++. .+||+||+... + ..++.-|..+|||.+.++.
T Consensus 74 g-------l~~l~~------~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 74 A-------LNGLLD------PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred H-------HHhhcc------CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1 222222 26999997542 2 3455567778999999864
No 162
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=89.11 E-value=8 Score=35.78 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=59.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCC-CCCCchhhhhcHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPN-VIPSELVRARDFLAFVE 91 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~~~~~~~ 91 (471)
||||+.-=-+. |.--+.+|+++|.+ .| +|+++.|.....-....-.....++...+.. +. ....-.+.+.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~--~g-~V~VvAP~~eqSg~g~aiT~~~pl~~~~~~~~~~-~~y~v~GTPaDCV~ 75 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSP--LG-EVDVVAPETPKSATGLGITLHKPLRMYEVDLCGF-KVYATSGTPSDTIY 75 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHh--CC-cEEEEccCCCCccccccccCCCCcEEEEeccCCc-ceEEeCCCHHHHHH
Confidence 35665544332 44557889999988 87 7999998765544333222223455544431 11 00111122222222
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEEEcC-----------ch---hhHHHHHhhcCCCeEEEec
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAIIVDT-----------FL---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~-----------~~---~~~~~~A~~lgIP~v~~~~ 143 (471)
.. +..+. .+||+||+.. .+ ..++.-|..+|||.+.++.
T Consensus 76 la-----------l~~l~---~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 76 LA-----------TYGLG---RKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HH-----------HHhcc---CCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 21 12221 3699999632 22 3444556678999999865
No 163
>PRK14099 glycogen synthase; Provisional
Probab=89.03 E-value=15 Score=37.57 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=30.8
Q ss_pred CCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 11 RMCHIVALPYP------GRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 11 ~~~~il~~~~~------~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
+.|||++++.- +.|=-.-+-+|.++|++ +||+|.++.|.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~--~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKA--HGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 45899998762 33555667788999999 99999999985
No 164
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.96 E-value=23 Score=33.12 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=51.0
Q ss_pred CCceEeeccc---hHHhhhhcccceeecc---CCcch-HHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCC
Q 012096 332 DRGIVVPWCD---QLEVLCHSSIGGFWTH---CGLNS-TLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEI 404 (471)
Q Consensus 332 ~nv~v~~~~p---q~~lL~~~~~~~~Ith---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~ 404 (471)
.++...++++ ...++..+++ ++.- .|.|. +.||+++|+|+|.... ......+. .-+.|.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~~-~~~~g~~~~~--- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVVE-DGETGLLVPP--- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHhc-CCCceEecCC---
Confidence 5777888888 2335666766 6655 35543 5999999999966543 32333333 2023663322
Q ss_pred CCCCccCHHHHHHHHHHHhcC
Q 012096 405 GSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 405 ~~~~~~~~~~l~~~i~~~l~~ 425 (471)
...+.+.+++..++++
T Consensus 327 -----~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 327 -----GDVEELADALEQLLED 342 (381)
T ss_pred -----CCHHHHHHHHHHHhcC
Confidence 1689999999999987
No 165
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.83 E-value=2.7 Score=45.76 Aligned_cols=101 Identities=12% Similarity=0.170 Sum_probs=66.1
Q ss_pred Hhhhhcccceeecc---CCcc-hHHHHHHcCCc---eecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHH
Q 012096 344 EVLCHSSIGGFWTH---CGLN-STLEAAYAGVP---MLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEIT 416 (471)
Q Consensus 344 ~lL~~~~~~~~Ith---gG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~ 416 (471)
.++..+++ |+.- -|+| +..|++++|.| ++++. +--..+..+. .-|+.++. .+.++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlS---e~~G~~~~l~---~~allVnP--------~D~~~lA 434 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLS---EFAGAGQSLG---AGALLVNP--------WNITEVS 434 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEee---CCcCchhhhc---CCeEEECC--------CCHHHHH
Confidence 47888888 7754 4876 77799999999 33433 2222222221 25777776 4899999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 417 ELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 417 ~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
++|.++|+.+. +.-+++.+++.+..++ .+...-.+.|++.|.+.
T Consensus 435 ~AI~~aL~m~~---~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 435 SAIKEALNMSD---EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHhCCH---HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 99999998432 3445555656665553 36666777777777654
No 166
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=87.33 E-value=5.8 Score=36.33 Aligned_cols=113 Identities=13% Similarity=0.004 Sum_probs=61.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCC--CCCCchhhhhcHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPN--VIPSELVRARDFLAFV 90 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~~~~~~~~~~~~~~~~ 90 (471)
||||+.-=-+ =|.--+.+|+++|++ .| +|+++.|.....-+...-.....+++..++. +. ....-.+.+..-.
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~--~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv 75 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKE--LG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCV 75 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHh--CC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHH
Confidence 3565543322 133447788999999 88 8999999866654443322233566655541 11 0011112222222
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
... +..++. .+||+||+... + ..++.-|..+|||.+.++.
T Consensus 76 ~~g-------l~~l~~------~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 76 ILG-------INELMP------EVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred HHH-------HHHhcc------CCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 221 222222 26999997542 2 4455567778999999864
No 167
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=85.99 E-value=7.8 Score=36.54 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=79.5
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh-C--CCcEEEEEcC--CCCcccc--------ccC-CCceEe-eccc---hHHhh
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN-S--GVRFFWVSRG--DTSWFKD--------GCV-DRGIVV-PWCD---QLEVL 346 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~-~--~~~vi~~~~~--~~~~~~~--------~~~-~nv~v~-~~~p---q~~lL 346 (471)
.+-|-.|..+.. .+...++++++.+ . +.+++.-++- +.+...+ ..+ +|+.+. +++| +..+|
T Consensus 146 ~~tIlvGNSgd~-SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 146 KMTILVGNSGDR-SNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred ceEEEEeCCCCC-cccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 344445655542 3344445555543 3 3567666654 2211111 123 577764 6666 67799
Q ss_pred hhcccceeecc--CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHh
Q 012096 347 CHSSIGGFWTH--CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 347 ~~~~~~~~Ith--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
+.|+++.|+++ =|.|+++-.+..|+|+++- .+-++|....+ . |+-+..+. ..++...+.++=+++.
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e-~-gv~Vlf~~------d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE-Q-GLPVLFTG------DDLDEDIVREAQRQLA 292 (322)
T ss_pred HhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh-C-CCeEEecC------CcccHHHHHHHHHHHH
Confidence 99999988887 6899999999999999874 34444555443 4 66665555 3478888877755544
No 168
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=85.88 E-value=7.6 Score=37.16 Aligned_cols=41 Identities=20% Similarity=0.118 Sum_probs=33.3
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|+||+|+++ +|-|=..-..++|-.|++ .|.+|.++++....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~--~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAE--SGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHH--cCCcEEEEEeCCCC
Confidence 457877777 788999999999999999 99888888765433
No 169
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.80 E-value=3.8 Score=42.23 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=47.5
Q ss_pred chHHhhhhcccceeec---cCCc-chHHHHHHcCCceecccccc-cccchhhhhhhh-hcceeeeecCCCCCCCccCHHH
Q 012096 341 DQLEVLCHSSIGGFWT---HCGL-NSTLEAAYAGVPMLTFPIMM-DQVPNSKLIVED-WKIGWKVKKPEIGSESLVTRDE 414 (471)
Q Consensus 341 pq~~lL~~~~~~~~It---hgG~-~s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~-lG~G~~l~~~~~~~~~~~~~~~ 414 (471)
+..+++..|++ ||. +-|+ -++.||+++|+|+|+....+ .... ..+... -..|+.+..+.. +.-.-+.++
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~-~~~~e~v~~ 541 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRF-KSPDESVQQ 541 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCc-cchHHHHHH
Confidence 35667888888 555 3554 48999999999999976632 1111 112111 014666653111 111236777
Q ss_pred HHHHHHHHhcC
Q 012096 415 ITELVKRFMDL 425 (471)
Q Consensus 415 l~~~i~~~l~~ 425 (471)
|++++.++++.
T Consensus 542 La~~m~~~~~~ 552 (590)
T cd03793 542 LTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHhCC
Confidence 88888888854
No 170
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.43 E-value=2.6 Score=33.78 Aligned_cols=40 Identities=8% Similarity=-0.066 Sum_probs=28.2
Q ss_pred cEEEEEcCCCcc---ChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRG---HINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~G---H~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|||+|+.-|-.+ .-.-.++|+.+-.+ |||+|.++.+....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~--RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQR--RGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHH--TT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHH--CCCEEEEEEcCcEE
Confidence 688888887654 34568889999999 99999999987644
No 171
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=82.19 E-value=4.6 Score=43.69 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=68.9
Q ss_pred EeeccchHH---hhhhcccceeecc---CCc-chHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCC
Q 012096 336 VVPWCDQLE---VLCHSSIGGFWTH---CGL-NSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSES 408 (471)
Q Consensus 336 v~~~~pq~~---lL~~~~~~~~Ith---gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~ 408 (471)
+.+++++.+ ++..+++ |+.- -|+ .+..|++++|+|-..+|+..+--.-+..+ .-|+.++.
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-------
Confidence 446677554 6788888 6654 465 47899999977633333333221112222 23667665
Q ss_pred ccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 409 LVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 409 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
.+.++++++|.++|+++. .+.+++.+++.+..+ .-+...-++++++.+.+.
T Consensus 413 -~d~~~la~ai~~~l~~~~---~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 -NDIEGIAAAIKRALEMPE---EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred -CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 489999999999998632 344444555544443 347777788888877764
No 172
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=82.07 E-value=2.2 Score=34.83 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=36.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
|||++...++.+=.. ...+.++|++ +|++|.++.++.....+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~--~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKR--AGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHT--TTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhh--CCCEEEEEECCcHHHHhhhh
Confidence 578888777755555 9999999999 99999999999888877665
No 173
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=81.95 E-value=14 Score=34.28 Aligned_cols=102 Identities=8% Similarity=-0.032 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHH
Q 012096 27 NPMMNLCKLLVSR-NPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVL 105 (471)
Q Consensus 27 ~p~l~La~~L~~~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 105 (471)
--+.+|+++|.+. ..|++|+++.|.....-....-.....++...+.++. ..-.+.+....... +..++
T Consensus 14 ~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~---yav~GTPaDCV~la-------l~~~~ 83 (261)
T PRK13931 14 PGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRR---FAAEGSPADCVLAA-------LYDVM 83 (261)
T ss_pred HhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCe---EEEcCchHHHHHHH-------HHHhc
Confidence 3456677777761 1357999999976554443322223356665554221 11112222222222 22233
Q ss_pred HHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEec
Q 012096 106 DFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 106 ~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~ 143 (471)
.. .+||+||+... + ..++.-|..+|||.++++.
T Consensus 84 ~~-----~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 84 KD-----APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CC-----CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 21 16999997532 2 3444556778999999864
No 174
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=81.82 E-value=10 Score=34.69 Aligned_cols=114 Identities=14% Similarity=0.010 Sum_probs=59.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
|||++.-=-+ =|.--+.+|+++|+. +++|++++|.....-+...-.....++...+..... .-.+.+-.....
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~~---~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~~~---av~GTPaDCV~l 73 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALRE---GADVTVVAPDREQSGASHSLTLHEPLRVRQVDNGAY---AVNGTPADCVIL 73 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHhh---CCCEEEEccCCCCcccccccccccCceeeEeccceE---EecCChHHHHHH
Confidence 3555543222 144446667777774 999999999876655433322233444444432110 000111121111
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCc----------h---hhHHHHHhhcCCCeEEEecch
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF----------L---AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~----------~---~~~~~~A~~lgIP~v~~~~~~ 145 (471)
.+..++++. .||+||+... + ..++.=|..+|||.|+++-..
T Consensus 74 -------al~~l~~~~-----~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~ 127 (252)
T COG0496 74 -------GLNELLKEP-----RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAY 127 (252)
T ss_pred -------HHHHhccCC-----CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehh
Confidence 134444432 4999997532 2 334445677899999986543
No 175
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=80.38 E-value=3 Score=40.97 Aligned_cols=144 Identities=10% Similarity=0.103 Sum_probs=74.7
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCC-Cccc--cccCCCceEe-eccchHHhhhhcccceeeccCCcchHHHHHHcCCceecc
Q 012096 301 MDEIVAGVRNSGVRFFWVSRGDT-SWFK--DGCVDRGIVV-PWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVPMLTF 376 (471)
Q Consensus 301 ~~~~~~al~~~~~~vi~~~~~~~-~~~~--~~~~~nv~v~-~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP~v~~ 376 (471)
...+. .+.+.++.++++..... .... ....+++..+ +..+-.++|..+++ +||=- ...+.|.+..++|+|..
T Consensus 219 ~~~l~-~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify 294 (369)
T PF04464_consen 219 FEKLN-FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFY 294 (369)
T ss_dssp HHHHH-HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE
T ss_pred HHHHH-HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEE
Confidence 33344 55555666665543211 1111 1123466654 44567889999999 99987 45889999999999987
Q ss_pred cccccccchhhhhhhhhcceeeeecCCCCC-CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcH
Q 012096 377 PIMMDQVPNSKLIVEDWKIGWKVKKPEIGS-ESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSI 455 (471)
Q Consensus 377 P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 455 (471)
..-.|+....+ |. ..+..+... ...-+.++|.++|.++++++ ..++++-++..+++-. ...|.++.
T Consensus 295 ~~D~~~Y~~~r------g~--~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~----~~~~~~~~~~~~~~~~-~~Dg~s~e 361 (369)
T PF04464_consen 295 QPDLEEYEKER------GF--YFDYEEDLPGPIVYNFEELIEAIENIIENP----DEYKEKREKFRDKFFK-YNDGNSSE 361 (369)
T ss_dssp -TTTTTTTTTS------SB--SS-TTTSSSS-EESSHHHHHHHHTTHHHHH----HHTHHHHHHHHHHHST-T--S-HHH
T ss_pred eccHHHHhhcc------CC--CCchHhhCCCceeCCHHHHHHHHHhhhhCC----HHHHHHHHHHHHHhCC-CCCchHHH
Confidence 65555442221 22 222100000 01237899999999988762 4566666777777744 23455555
Q ss_pred HHHHHH
Q 012096 456 TNFDAF 461 (471)
Q Consensus 456 ~~~~~~ 461 (471)
+.++.+
T Consensus 362 ri~~~I 367 (369)
T PF04464_consen 362 RIVNYI 367 (369)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 176
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=80.09 E-value=4.2 Score=38.77 Aligned_cols=41 Identities=20% Similarity=0.082 Sum_probs=32.4
Q ss_pred cEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccchh
Q 012096 13 CHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 13 ~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~ 55 (471)
||++|+.+ ||-|=..-..++|-.+++ +|++|.+++......
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCcc
Confidence 35655555 788999999999999999 999999999876543
No 177
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.68 E-value=4.2 Score=33.58 Aligned_cols=42 Identities=10% Similarity=-0.136 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|+.+|++.+.++-+|-.-..-++..|+. .|++|+++......
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~--~G~eVi~LG~~vp~ 43 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTE--AGFEVINLGVMTSQ 43 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHH--CCCEEEECCCCCCH
Confidence 5678999999999999999999999999 99999999976443
No 178
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=78.93 E-value=37 Score=34.71 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=72.5
Q ss_pred ceEeeccchHH---hhhhcccceeecc---CCcchH-HHHHHcCC----ceecccccccccchhhhhhhhhcceeeeecC
Q 012096 334 GIVVPWCDQLE---VLCHSSIGGFWTH---CGLNST-LEAAYAGV----PMLTFPIMMDQVPNSKLIVEDWKIGWKVKKP 402 (471)
Q Consensus 334 v~v~~~~pq~~---lL~~~~~~~~Ith---gG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~ 402 (471)
+++.+.+|+.+ ++..+++ ++.- -|+|-+ .|.++++. |+|+=-+. -|. + .|.-++.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~-~l~~AllVNP- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--V-ELKGALLTNP- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--h-hcCCCEEECC-
Confidence 34557777654 6677777 4433 689855 49999977 44433221 111 2 3344677776
Q ss_pred CCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 403 EIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 403 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
.+.++++++|.+.|+.+. .+=+++.+++.+.++. .+...=.+.|++.|.++
T Consensus 433 -------~d~~~~A~ai~~AL~m~~---~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 -------YDPVRMDETIYVALAMPK---AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred -------CCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 599999999999998753 3456666677666664 36677788899988875
No 179
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.30 E-value=40 Score=31.77 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC---CCCCCchhhhhcHH
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP---NVIPSELVRARDFL 87 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip---~~~~~~~~~~~~~~ 87 (471)
+...|+|...|+.|--.-.=.|.+.|.+ +||+|-++.-.+...+.-.. ...+.++...+. ..+-......+...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~--~G~rVaVlAVDPSSp~TGGs-iLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRE--RGHRVAVLAVDPSSPFTGGS-ILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHH--CCcEEEEEEECCCCCCCCcc-ccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3347899999999999999999999999 99999999976554433221 112223322221 11100111111222
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhh--HHHHHhhcCCCeEEEecc
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAW--AVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~--~~~~A~~lgIP~v~~~~~ 144 (471)
..-. ...+.++-+++. ++|+||++..... =..+++..++=.+.+.|.
T Consensus 127 GlS~--------at~~~i~~ldAa--G~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 127 GLSR--------ATREAIKLLDAA--GYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred hhhH--------HHHHHHHHHHhc--CCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 2222 233444444442 7999999976643 335677777666665443
No 180
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=77.64 E-value=22 Score=31.53 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||||+|++.+..+- +.++.+++.+...+++|.++.+.
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 68999999987433 34666777772224778876554
No 181
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=76.73 E-value=3 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=26.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|||++++-.+ ++ --.|+++..+ |||+||.++-...+
T Consensus 1 mKIaiIgAsG--~~--Gs~i~~EA~~--RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIGASG--KA--GSRILKEALK--RGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEecCc--hh--HHHHHHHHHh--CCCeeEEEEeChHh
Confidence 5787776543 32 2467899999 99999999876543
No 182
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=75.29 E-value=37 Score=30.47 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=62.1
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHhcCCCcEEEEEECc---cchhhhcCCCCCCCCeEEEecCCCCCCchhh----
Q 012096 12 MCHIVALPYP--GRGHINPMMNLCKLLVSRNPNVFITFVVTE---EWLSFIGSGHGNHNNIRFETIPNVIPSELVR---- 82 (471)
Q Consensus 12 ~~~il~~~~~--~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~---~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~---- 82 (471)
|.+|.+++++ +-|-..-.-+|+.+|+. +|++|.++-.. .+.+.+-... .++-|.-+. ....+...
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~--~GkKv~liD~DiGLRNLDlimGlE---~RiVYd~vd-Vi~g~~~l~QAL 74 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ--LGKKVVLIDFDIGLRNLDLIMGLE---NRIVYDLVD-VIEGEATLNQAL 74 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHH--cCCeEEEEecCcCchhhhhhhccc---ceeeeeehh-hhcCccchhhHh
Confidence 4577777775 77999999999999999 99999998765 4445554431 144443333 11100000
Q ss_pred -----hhcHHHHHHHH-----HHhchHHHHHHHHHhhhcCCCceEEEEcCch
Q 012096 83 -----ARDFLAFVESV-----STKMEAPFEKVLDFLQVEAPVVSAIIVDTFL 124 (471)
Q Consensus 83 -----~~~~~~~~~~~-----~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~ 124 (471)
..++. ++-+. -......++.++++++.. .||.||+|.-.
T Consensus 75 IkDKr~~nL~-lLPAsQtrdKdalt~E~v~~vv~eL~~~--~fDyIi~DsPA 123 (272)
T COG2894 75 IKDKRLENLF-LLPASQTRDKDALTPEGVKKVVNELKAM--DFDYIIIDSPA 123 (272)
T ss_pred hccccCCceE-ecccccccCcccCCHHHHHHHHHHHHhc--CCCEEEecCcc
Confidence 00111 00000 012345677888888753 69999999654
No 183
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=73.78 E-value=16 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
|||+++..+++-| +||..|.+..+..+|.++-
T Consensus 1 MkVLviGsGgREH-----Aia~~l~~s~~v~~v~~aP 32 (100)
T PF02844_consen 1 MKVLVIGSGGREH-----AIAWKLSQSPSVEEVYVAP 32 (100)
T ss_dssp EEEEEEESSHHHH-----HHHHHHTTCTTEEEEEEEE
T ss_pred CEEEEECCCHHHH-----HHHHHHhcCCCCCEEEEeC
Confidence 7999999999888 5899999853344444433
No 184
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=72.98 E-value=16 Score=31.11 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=57.5
Q ss_pred EEEEcCCCccChHH----HHHHHHHHHhcCCCcEEEEEECcc---chhh----hcCCCCCCCCeEEEecCCCCCCchhhh
Q 012096 15 IVALPYPGRGHINP----MMNLCKLLVSRNPNVFITFVVTEE---WLSF----IGSGHGNHNNIRFETIPNVIPSELVRA 83 (471)
Q Consensus 15 il~~~~~~~GH~~p----~l~La~~L~~~~rGh~Vt~~~~~~---~~~~----~~~~~~~~~~~~~~~ip~~~~~~~~~~ 83 (471)
|+++.--..|.++| .+..|++|++. .|.+|+.++... ..+. +...+.. +.+.+++......
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~-~g~~v~av~~G~~~~~~~~l~~~l~~~G~d----~v~~~~~~~~~~~--- 73 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEA-LGGEVTAVVLGPAEEAAEALRKALAKYGAD----KVYHIDDPALAEY--- 73 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHC-TTSEEEEEEEETCCCHHHHHHHHHHSTTES----EEEEEE-GGGTTC---
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhh-cCCeEEEEEEecchhhHHHHhhhhhhcCCc----EEEEecCcccccc---
Confidence 44444444566665 78889999985 488888877653 2222 2334221 3333331111000
Q ss_pred hcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch---hhHHHHHhhcCCCeEEEec
Q 012096 84 RDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~---~~~~~~A~~lgIP~v~~~~ 143 (471)
+. ......+.+++++. +||+|+..... ..+..+|.++|.|++.-..
T Consensus 74 -~~--------~~~a~~l~~~~~~~-----~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 74 -DP--------EAYADALAELIKEE-----GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp --H--------HHHHHHHHHHHHHH-----T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred -CH--------HHHHHHHHHHHHhc-----CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 11 11222344555553 59999987654 5667899999999999544
No 185
>PRK12342 hypothetical protein; Provisional
Probab=72.51 E-value=35 Score=31.50 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCCceEEEEcCch-hh-----HHHHHhhcCCCeEEEecc
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFL-AW-----AVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~-~~-----~~~~A~~lgIP~v~~~~~ 144 (471)
+...++.+ +||+|++...+ .. +..+|+.+|+|++.+...
T Consensus 101 La~~i~~~-----~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKI-----GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHh-----CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 34445543 49999986655 33 778999999999997544
No 186
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=72.25 E-value=9.7 Score=29.05 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHHHh
Q 012096 29 MMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLDFL 108 (471)
Q Consensus 29 ~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 108 (471)
++.+|+.|.+ .|++ +++++...+.+.+. |+....+-..........++. ++++.+
T Consensus 2 ~~~~a~~l~~--lG~~--i~AT~gTa~~L~~~-----Gi~~~~v~~~~~~~~~~~g~~----------------~i~~~i 56 (95)
T PF02142_consen 2 IVPLAKRLAE--LGFE--IYATEGTAKFLKEH-----GIEVTEVVNKIGEGESPDGRV----------------QIMDLI 56 (95)
T ss_dssp HHHHHHHHHH--TTSE--EEEEHHHHHHHHHT-----T--EEECCEEHSTG-GGTHCH----------------HHHHHH
T ss_pred HHHHHHHHHH--CCCE--EEEChHHHHHHHHc-----CCCceeeeeecccCccCCchh----------------HHHHHH
Confidence 5789999999 9955 56677777888777 666544432221110111111 333333
Q ss_pred hhcCCCceEEEEcCch--h-------hHHHHHhhcCCCeE
Q 012096 109 QVEAPVVSAIIVDTFL--A-------WAVDVGNRRNIPVA 139 (471)
Q Consensus 109 ~~~~~~~D~vI~D~~~--~-------~~~~~A~~lgIP~v 139 (471)
+. .++|+||..... . ....+|..++||++
T Consensus 57 ~~--~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 57 KN--GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HT--TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred Hc--CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 33 379999976543 1 11356788899876
No 187
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=71.92 E-value=5.2 Score=34.85 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
|+||++...++.|=. -...+.+.|++ +|++|.++.++....++..
T Consensus 1 ~k~Ill~vtGsiaa~-~~~~li~~L~~--~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAY-KAADLTSQLTK--RGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHH-HHHHHHHHHHH--CCCEEEEEEChhHHHHcCH
Confidence 467888777765544 58999999999 9999999999988777653
No 188
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=71.85 E-value=57 Score=31.45 Aligned_cols=128 Identities=12% Similarity=0.051 Sum_probs=79.6
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh---CCCcEEEEEcCC--CCcccc--------ccC-CCceE-eeccc---hHHhh
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN---SGVRFFWVSRGD--TSWFKD--------GCV-DRGIV-VPWCD---QLEVL 346 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~---~~~~vi~~~~~~--~~~~~~--------~~~-~nv~v-~~~~p---q~~lL 346 (471)
.+.|-.|..+..+ +...++++++.+ .+.+++.=++-. .+...+ ..+ +|+.+ .+++| +..+|
T Consensus 185 ~ltILvGNSgd~s-NnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 185 KLTILVGNSGDPS-NNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred ceEEEEcCCCCCC-ccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 4555556665432 233334444443 246666655542 111111 123 47765 47877 67799
Q ss_pred hhcccceeecc--CCcchHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhc
Q 012096 347 CHSSIGGFWTH--CGLNSTLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMD 424 (471)
Q Consensus 347 ~~~~~~~~Ith--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~ 424 (471)
..|+++.|.+. =|+|+++-.+..|+|+++- .+-+.+-...+ . |+=+.... ..++...|.++=+++..
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~-~-~ipVlf~~------d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE-Q-GIPVLFYG------DELDEALVREAQRQLAN 332 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh-C-CCeEEecc------ccCCHHHHHHHHHHHhh
Confidence 99999888876 6899999999999999864 33344444333 4 55554444 34899999999888764
No 189
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=71.13 E-value=71 Score=27.89 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=36.7
Q ss_pred CcEEEEEcCC---C-ccChHH-HHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC
Q 012096 12 MCHIVALPYP---G-RGHINP-MMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP 73 (471)
Q Consensus 12 ~~~il~~~~~---~-~GH~~p-~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip 73 (471)
|.||+|+..- + .|=+-- .=.|+..|++ +||+|+++|.......-... ..+++...+|
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~--~g~~v~Vyc~~~~~~~~~~~---y~gv~l~~i~ 62 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS--KGIDVTVYCRSDYYPYKEFE---YNGVRLVYIP 62 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc--CCceEEEEEccCCCCCCCcc---cCCeEEEEeC
Confidence 5578887652 2 243433 4467788888 99999999987655333222 2277777776
No 190
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=70.99 E-value=5.7 Score=36.35 Aligned_cols=92 Identities=12% Similarity=0.217 Sum_probs=52.9
Q ss_pred CCeEEEEEeCCCcC---CCHHHHHHHHHHHHhCCCcEEEEEcCCC--Ccc----ccccCC-CceEeeccc--h-HHhhhh
Q 012096 282 DSSVLYVSLGSLWS---VSSVQMDEIVAGVRNSGVRFFWVSRGDT--SWF----KDGCVD-RGIVVPWCD--Q-LEVLCH 348 (471)
Q Consensus 282 ~~~~I~vs~GS~~~---~~~~~~~~~~~al~~~~~~vi~~~~~~~--~~~----~~~~~~-nv~v~~~~p--q-~~lL~~ 348 (471)
+++.|.+..|+... .+.+.+.++++.+.+.+++++...+... ... ....+. .+.+.+-.+ + ..++.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 44578888888763 5678899999999888877766544432 011 111121 233333332 3 458888
Q ss_pred cccceeeccCCcchHHHHHHcCCceecc
Q 012096 349 SSIGGFWTHCGLNSTLEAAYAGVPMLTF 376 (471)
Q Consensus 349 ~~~~~~IthgG~~s~~eal~~GvP~v~~ 376 (471)
+++ +|+. -.|.++=|.+.|+|+|++
T Consensus 184 a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 184 ADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp SSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 888 8887 456788899999999998
No 191
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=70.81 E-value=5.6 Score=34.71 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=38.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCC-CcEEEEEECccchhhhcCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNP-NVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~r-Gh~Vt~~~~~~~~~~~~~~ 60 (471)
|+||++...++.| .+-...++++|++ . ||+|.++.++....++...
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k--~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRD--VGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHh--hcCCeEEEEECHHHHHHHHHH
Confidence 5678877777766 7779999999998 6 9999999999988887653
No 192
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.20 E-value=13 Score=34.69 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHHHHHHHhC-CCcEEEEEcCCC-----Cccccc---cCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHcCCc
Q 012096 302 DEIVAGVRNS-GVRFFWVSRGDT-----SWFKDG---CVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYAGVP 372 (471)
Q Consensus 302 ~~~~~al~~~-~~~vi~~~~~~~-----~~~~~~---~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~GvP 372 (471)
..+.++.+.. +.+++++..... ..+... .+..+.+.+-++-.+++.+++. +||-.+. +-.||+.+|+|
T Consensus 144 ~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkp 220 (269)
T PF05159_consen 144 DMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKP 220 (269)
T ss_pred HHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCc
Confidence 3344444444 577777765421 111111 1223444566788889999999 8887554 77899999999
Q ss_pred eecccc
Q 012096 373 MLTFPI 378 (471)
Q Consensus 373 ~v~~P~ 378 (471)
++++.-
T Consensus 221 Vi~~G~ 226 (269)
T PF05159_consen 221 VIVFGR 226 (269)
T ss_pred eEEecC
Confidence 999753
No 193
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=70.02 E-value=7.1 Score=31.13 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||++.+.++..|.....-++..|+. .|++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~--~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRD--AGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHH--CCCEEEECCCC
Confidence 4889999999999999999999999 99999887754
No 194
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.96 E-value=37 Score=31.38 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|+|+++...+. ...|++.|.+ +||+|+..+.....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~--~g~~v~~s~~t~~~ 35 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIA--QGIEILVTVTTSEG 35 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHh--CCCeEEEEEccCCc
Confidence 46777765553 5789999999 99999988865543
No 195
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=69.60 E-value=48 Score=28.02 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=24.4
Q ss_pred cCCCccChHHHHHHHHHHHhcCCCcEEEEE
Q 012096 19 PYPGRGHINPMMNLCKLLVSRNPNVFITFV 48 (471)
Q Consensus 19 ~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~ 48 (471)
+.++.|-..-.+.|++.|++ +|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~--~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKK--AGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHH--CCCcEEEE
Confidence 34567889999999999999 99999886
No 196
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=68.99 E-value=26 Score=35.51 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=42.6
Q ss_pred hHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 012096 362 STLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAR 438 (471)
Q Consensus 362 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~ 438 (471)
++.||+++|+|+|+. ++..=+.-++.. --|...+. + .-....+++++.++.+| +.++.+..
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~~-~tG~l~dp-~-----~e~~~~~a~~~~kl~~~-----p~l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVHG-VTGLLIDP-G-----QEAVAELADALLKLRRD-----PELWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEcC-CcceeeCC-c-----hHHHHHHHHHHHHHhcC-----HHHHHHHH
Confidence 789999999999886 444455555522 45777776 1 12334799999999998 77665543
No 197
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=68.45 E-value=80 Score=28.80 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=25.2
Q ss_pred CceEEE-EcCch-hhHHHHHhhcCCCeEEEecchH
Q 012096 114 VVSAII-VDTFL-AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 114 ~~D~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
-||+++ +|+.. --+..=|.++|||+|.++-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 499885 67766 5566779999999999865543
No 198
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=67.92 E-value=48 Score=30.50 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
|++|+++.+.+.|+ .||+.|.+ +|+.|++-+...... .... ++... ...+ .
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~--~g~~v~~Svat~~g~-~~~~-----~~~v~--~G~l-------~------- 52 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAA--AGVDIVLSLAGRTGG-PADL-----PGPVR--VGGF-------G------- 52 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHh--CCCeEEEEEccCCCC-cccC-----CceEE--ECCC-------C-------
Confidence 56899998887774 78999999 899888776654333 1111 11111 0011 0
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEE--EcCch----hhHHHHHhhcCCCeEEE
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAII--VDTFL----AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI--~D~~~----~~~~~~A~~lgIP~v~~ 141 (471)
-...+.+++++ .++++|| +.+|. --+..+++.+|||++.|
T Consensus 53 -----~~~~l~~~l~~-----~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 -----GAEGLAAYLRE-----EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred -----CHHHHHHHHHH-----CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 11123344443 2688877 33333 23456889999999997
No 199
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=67.39 E-value=96 Score=27.97 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=69.8
Q ss_pred CcEEEEEcCC--CccChHHHHHHHHHHHhcCCCcEEEEEECccc----------hhhhcCCCCCC---CCeEEEecCCCC
Q 012096 12 MCHIVALPYP--GRGHINPMMNLCKLLVSRNPNVFITFVVTEEW----------LSFIGSGHGNH---NNIRFETIPNVI 76 (471)
Q Consensus 12 ~~~il~~~~~--~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~----------~~~~~~~~~~~---~~~~~~~ip~~~ 76 (471)
||+.+|+++. .-|=..-.-.|++.|+. +|++|..+=+-.. ...+.+..... ..+..+.+....
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~--~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P~ 78 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQ--QGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDLSYELINPYRFKEPL 78 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHh--CCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCcccccccceecCCCC
Confidence 4566666664 55899999999999999 9999998754321 11222211110 122333333222
Q ss_pred CCchhhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchh---------hHHHHHhhcCCCeEEEecchHH
Q 012096 77 PSELVRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLA---------WAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
.+- .....+.. ..-.+.+..-+..+. .++|+||++.... .-.+++..+++|+|.+.....-
T Consensus 79 sPh------lAa~~eg~-~I~~~~l~~~l~~l~---~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LG 148 (223)
T COG0132 79 SPH------LAAELEGR-TIDLEKLSQGLRQLL---KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLG 148 (223)
T ss_pred CcH------HHHhhcCC-cccHHHHHHHHHhhh---cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCcc
Confidence 210 00000000 011112222233333 2699999887542 3457888999999999877665
Q ss_pred HHHH
Q 012096 148 LFSV 151 (471)
Q Consensus 148 ~~~~ 151 (471)
..+.
T Consensus 149 tINH 152 (223)
T COG0132 149 TINH 152 (223)
T ss_pred HHHH
Confidence 5543
No 200
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=66.34 E-value=8.7 Score=33.79 Aligned_cols=44 Identities=14% Similarity=-0.157 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCccChHH-HHHHHHHHHhcCCCcEEEEEECccchhhhc
Q 012096 12 MCHIVALPYPGRGHINP-MMNLCKLLVSRNPNVFITFVVTEEWLSFIG 58 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p-~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~ 58 (471)
.+||++.-.|+ +...- ...+++.|++ +||+|.++.++...+++.
T Consensus 5 ~k~IllgVTGs-iaa~k~a~~lir~L~k--~G~~V~vv~T~aA~~~~~ 49 (196)
T PRK08305 5 GKRIGFGLTGS-HCTYDEVMPEIEKLVD--EGAEVTPIVSYTVQTTDT 49 (196)
T ss_pred CCEEEEEEcCH-HHHHHHHHHHHHHHHh--CcCEEEEEECHhHHHHhh
Confidence 45777666665 45566 6999999999 999999999987776554
No 201
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=66.12 E-value=17 Score=36.42 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
++||||++..+++-| +|++.|++ .++-..+++.+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~--~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRK--SNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEEECCc
Confidence 468999999999877 68999999 7765555554443
No 202
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.10 E-value=7 Score=38.25 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=35.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhc
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIG 58 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~ 58 (471)
|+|-.-|+-|--.=++.++..|++ +| .|.+++.++...++.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~--~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAK--RG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHh--cC-cEEEEeCCcCHHHHH
Confidence 666677899999999999999999 89 999999998877663
No 203
>PRK08506 replicative DNA helicase; Provisional
Probab=65.95 E-value=30 Score=35.28 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=34.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|=..-.+.+|....+ .|+.|.|++.+...+.+
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLEMPAEQL 235 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCcCCHHHH
Confidence 677778899999999999988888 89999999987655433
No 204
>PRK14098 glycogen synthase; Provisional
Probab=65.95 E-value=9.5 Score=39.10 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 10 GRMCHIVALPYP------GRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 10 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
+.||||++++.- +.|=-.-+-+|.++|++ +||+|.++.|.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~--~g~~v~v~~P~ 48 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEE--EGFEARIMMPK 48 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 446999998762 33555667789999999 99999999985
No 205
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=64.73 E-value=20 Score=31.18 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=50.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcE--EEEEEC-ccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVF--ITFVVT-EEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAF 89 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~--Vt~~~~-~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 89 (471)
|||+|+..++. ..+..+.++|.+ ++|+ +.++.+ ++.......... .++....+... .
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~--~~~~~~iv~Vit~~~~~~~~~~~~~--~~~~~~~~~~~---------~---- 60 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKA--RGHNVEIVLVITNPDKPRGRSRAIK--NGIPAQVADEK---------N---- 60 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHT--TSSEEEEEEEEESSTTTHHHHHHHH--TTHHEEEHHGG---------G----
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHh--CCCCceEEEEecccccccccccccc--CCCCEEecccc---------C----
Confidence 68988876664 456677889999 8987 444443 322211111000 02222111100 0
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEEecc
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~ 144 (471)
+.. .......+.+.++++ +||++|+-.+. .....+-......++-++++
T Consensus 61 ~~~-~~~~~~~~~~~l~~~-----~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 61 FQP-RSENDEELLELLESL-----NPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp SSS-HHHHHHHHHHHHHHT-----T-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred CCc-hHhhhhHHHHHHHhh-----ccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 000 011122234445554 59999987665 34444556666677776554
No 206
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=64.46 E-value=6.8 Score=34.21 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCccChHH------------HHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINP------------MMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p------------~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.+||+|..+|+.=.+.| ..+||+++.. +|++|+++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~--~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAAR--RGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHH--TT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHH--CCCEEEEEecCc
Confidence 35777777777666655 5789999999 999999999974
No 207
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=64.27 E-value=52 Score=24.61 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEe-cCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHHH
Q 012096 29 MMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFET-IPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLDF 107 (471)
Q Consensus 29 ~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 107 (471)
++.+++.|.+ .|+++ ++++...+.+... |+.... ++. ...+. .++++.
T Consensus 2 ~~~~~~~l~~--lG~~i--~AT~gTa~~L~~~-----Gi~~~~~~~k-i~~~~---------------------~~i~~~ 50 (90)
T smart00851 2 LVELAKRLAE--LGFEL--VATGGTAKFLREA-----GLPVKTLHPK-VHGGI---------------------LAILDL 50 (90)
T ss_pred HHHHHHHHHH--CCCEE--EEccHHHHHHHHC-----CCcceeccCC-CCCCC---------------------HHHHHH
Confidence 4688999999 99998 3455556667665 554421 111 11000 013333
Q ss_pred hhhcCCCceEEEEcCc--h-------hhHHHHHhhcCCCeE
Q 012096 108 LQVEAPVVSAIIVDTF--L-------AWAVDVGNRRNIPVA 139 (471)
Q Consensus 108 l~~~~~~~D~vI~D~~--~-------~~~~~~A~~lgIP~v 139 (471)
++. .++|+||.... . .....+|-..+||++
T Consensus 51 i~~--g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 51 IKN--GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred hcC--CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 333 37999997542 1 234456888899986
No 208
>PRK05920 aromatic acid decarboxylase; Validated
Probab=64.24 E-value=9.3 Score=33.90 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
++||++.-.++ ....-...+.+.|++ .||+|.++.++....++..
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~--~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLA--ADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHH--CCCEEEEEEChhHHHHHHH
Confidence 45777766665 445789999999999 9999999999988887754
No 209
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=64.13 E-value=36 Score=31.35 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
|||+++.+.+.| ..|++.|.+ +|+ |.+-+.-+....+...... .... ...++ .
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~--~g~-v~~sv~t~~g~~~~~~~~~--~~~v--~~G~l-------g-------- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAE--AGY-VIVSVATSYGGELLKPELP--GLEV--RVGRL-------G-------- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHh--cCC-EEEEEEhhhhHhhhccccC--CceE--EECCC-------C--------
Confidence 689999888776 478999999 998 6555444333333321100 1111 00011 0
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEE--EcCch----hhHHHHHhhcCCCeEEE
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAII--VDTFL----AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI--~D~~~----~~~~~~A~~lgIP~v~~ 141 (471)
-...+.+++++ .++|+|| +.+|. --+..+++.+|||++.+
T Consensus 54 ----~~~~l~~~l~~-----~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 ----DEEGLAEFLRE-----NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred ----CHHHHHHHHHh-----CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 11223344443 2688887 33343 23556789999999997
No 210
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.57 E-value=40 Score=31.12 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=30.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+++..-++.|-.....++|..+++ .|++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~--~g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAE--QGKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHH--CCCCceEEeCCC
Confidence 344455788999999999999999 999999998764
No 211
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=63.35 E-value=1.8e+02 Score=29.75 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=90.2
Q ss_pred EEEEEeCCCcC-CCHHHHHHHHHHHHhCCCcEEEEEcCCC------CccccccCCCceEeeccc-hHH--hhhhccccee
Q 012096 285 VLYVSLGSLWS-VSSVQMDEIVAGVRNSGVRFFWVSRGDT------SWFKDGCVDRGIVVPWCD-QLE--VLCHSSIGGF 354 (471)
Q Consensus 285 ~I~vs~GS~~~-~~~~~~~~~~~al~~~~~~vi~~~~~~~------~~~~~~~~~nv~v~~~~p-q~~--lL~~~~~~~~ 354 (471)
.++..-|.... ...+.+..++.-+-..+.+++..-.++. ..+....+.++.+.-|.+ ... +++-+++=++
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lm 374 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILM 374 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEe
Confidence 33333444443 3345555555555555566665444432 112223566677776655 333 4555555222
Q ss_pred ecc---CCcchHHHHHHcCCceecccccc------cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 355 WTH---CGLNSTLEAAYAGVPMLTFPIMM------DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 355 Ith---gG~~s~~eal~~GvP~v~~P~~~------DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
-++ ||. |-++|+.+|.+-|+.+..+ |-..++ .... |.|..+.. .+++.+..+|.+.+
T Consensus 375 PSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~-gtGf~f~~--------~~~~~l~~al~rA~-- 440 (487)
T COG0297 375 PSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGV-GTGFLFLQ--------TNPDHLANALRRAL-- 440 (487)
T ss_pred CCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCc-eeEEEEec--------CCHHHHHHHHHHHH--
Confidence 233 555 6688999999888888743 333333 3434 78888876 49999999999876
Q ss_pred CchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHH
Q 012096 426 NNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDIS 466 (471)
Q Consensus 426 ~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 466 (471)
.-|+.....++...+.++..-=|-.....+.++..+
T Consensus 441 -----~~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~ 476 (487)
T COG0297 441 -----VLYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYK 476 (487)
T ss_pred -----HHhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHH
Confidence 345544444555555554422233444455544433
No 212
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.83 E-value=67 Score=32.56 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHH
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFV 90 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 90 (471)
|.+|+|... .+.|=..-...|++.|++ +|++|..+-+... .+.. .+...-.+.+.... +..
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~--~G~~V~~fK~Gpd--~~d~--------~~~~~~~g~~~~~l---d~~--- 64 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRR--RGLRVQPFKVGPD--YIDP--------AYHTAATGRPSRNL---DSW--- 64 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHh--CCCCcceeecCCC--cccH--------HHHHHHhCCCcccC---Cce---
Confidence 445666644 356888999999999999 9999998865210 0000 00000000000000 000
Q ss_pred HHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch------------hhHHHHHhhcCCCeEEEecch
Q 012096 91 ESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL------------AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~------------~~~~~~A~~lgIP~v~~~~~~ 145 (471)
......+.+.+..+.. +.|++|++... .....+|+.++.|+|.+....
T Consensus 65 ----~~~~~~v~~~~~~~~~---~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 65 ----MMGEELVRALFARAAQ---GADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ----eCCHHHHHHHHHHhcc---cCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0012334555555543 58999986541 236689999999999997654
No 213
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=62.73 E-value=32 Score=34.88 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCccChHHH------------HHHHHHHHhcCCCcEEEEEECcc
Q 012096 11 RMCHIVALPYPGRGHINPM------------MNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~------------l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+.+||+|..+|+.=-+.|. .+||+++.. +|++||+++.+.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~--~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAA--AGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHH--CCCcEEEEeCCc
Confidence 4579999999998888774 689999999 999999999764
No 214
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=62.06 E-value=43 Score=33.56 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=33.0
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hcCCCcEEEEEECccchhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLV-SRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~-~~~rGh~Vt~~~~~~~~~~ 56 (471)
+++...|+.|=..-.+.+|..++ + .|+.|.|++.+...+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlEm~~~~ 237 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLEMSAEQ 237 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHH
Confidence 67777789999999999998887 6 7999999997755543
No 215
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=62.02 E-value=48 Score=29.14 Aligned_cols=116 Identities=13% Similarity=0.070 Sum_probs=57.4
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEEECccch-hhhcCCCCC-CC-CeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHH
Q 012096 24 GHINPMMNLCKLLVSRNPNVFITFVVTEEWL-SFIGSGHGN-HN-NIRFETIPNVIPSELVRARDFLAFVESVSTKMEAP 100 (471)
Q Consensus 24 GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~-~~~~~~~~~-~~-~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (471)
-++.-.+.+.+.+.. .|-+|.|+++.... ..++..... .. -+....++..+. ...........+..... ..
T Consensus 40 ~~L~~A~~~i~~i~~--~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LT-N~~~~~~~~~~~~~~~~---~~ 113 (193)
T cd01425 40 EKLRLALNFIANIAA--KGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLT-NWKTIRKSIKRLKKLEK---EK 113 (193)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCC-CHHHHHHHHHHHHHHHH---HH
Confidence 344555666678888 89999999987433 333222110 00 122334443332 22111111111111111 11
Q ss_pred HHHHHHHhhhcCCCceEEEEcC-ch-hhHHHHHhhcCCCeEEEecch
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDT-FL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~-~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
++..+..++.....||+||+-. .. ..+..=|.++|||+|.+.-+.
T Consensus 114 ~~k~~~g~~~~~~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 114 LEKNLGGIKDMFRLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred HHHhcccccccccCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 2222222221114799998544 33 566677899999999986544
No 216
>PHA02542 41 41 helicase; Provisional
Probab=61.30 E-value=23 Score=36.09 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=33.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~ 55 (471)
+++..-|+.|=..-.+.+|...++ .|+.|.|++-+...+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~--~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQ--QGYNVLYISMEMAEE 231 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEEeccCCHH
Confidence 667777899999999999999888 899999999775554
No 217
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=61.19 E-value=23 Score=33.55 Aligned_cols=95 Identities=11% Similarity=-0.075 Sum_probs=54.5
Q ss_pred chhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcc
Q 012096 271 DNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSS 350 (471)
Q Consensus 271 ~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 350 (471)
.++........-+++-+-........+...+-.+.+++++++..+++-+|..+........ ......=.......|+
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~---~~~p~~~~~va~~fP~ 192 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG---HSDPLYLDDVARKFPE 192 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC---CCCchHHHHHHHHCCC
Confidence 3444455443322232222222233445557889999999999999977765432211110 0111111333567889
Q ss_pred cceeeccCC--cchHHHHHH
Q 012096 351 IGGFWTHCG--LNSTLEAAY 368 (471)
Q Consensus 351 ~~~~IthgG--~~s~~eal~ 368 (471)
++.++.|+| ..-..|++.
T Consensus 193 l~IVl~H~G~~~p~~~~a~~ 212 (293)
T COG2159 193 LKIVLGHMGEDYPWELEAIE 212 (293)
T ss_pred CcEEEEecCCCCchhHHHHH
Confidence 999999999 777777743
No 218
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=60.51 E-value=6.2 Score=33.38 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=27.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
||.++..+.+|+ ++|..|.+ +||+|++++.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHH--cCCEEEEEeccH
Confidence 577887777775 78999999 999999999874
No 219
>PRK05595 replicative DNA helicase; Provisional
Probab=60.03 E-value=37 Score=34.35 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHH-hcCCCcEEEEEECccchhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLV-SRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~-~~~rGh~Vt~~~~~~~~~~ 56 (471)
+++...|+.|=..-.+.+|..++ + .|+.|.|++.+...+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSLEMSKEQ 244 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEecCCCHHH
Confidence 56777789999999999998765 5 6999999998755543
No 220
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=59.94 E-value=90 Score=33.60 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=59.1
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
.|.|.+. ...|=..-.+.|++.|++ +|.+|-++=|-.. + | +. .... ...+..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~--~G~~Vg~fKPi~~------------~------p--~~--~~~~---~~~~~~ 56 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALER--KGVKVGFFKPIAQ------------P------P--LT--MSEV---EALLAS 56 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEeCCccc------------C------C--CC--HHHH---HHHHhc
Confidence 4555544 456889999999999999 9999999754211 1 1 10 0000 000000
Q ss_pred HHHhchHHHH---HHHHHhhhcCCCceEEEEcCchh---------hHHHHHhhcCCCeEEEecchH
Q 012096 93 VSTKMEAPFE---KVLDFLQVEAPVVSAIIVDTFLA---------WAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 93 ~~~~~~~~~~---~ll~~l~~~~~~~D~vI~D~~~~---------~~~~~A~~lgIP~v~~~~~~~ 146 (471)
......++ +.++.+. .+.|+||+|.... ....+|+.++.|++.+.....
T Consensus 57 --~~~~~~~~~I~~~~~~l~---~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~ 117 (684)
T PRK05632 57 --GQLDELLEEIVARYHALA---KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGN 117 (684)
T ss_pred --cCChHHHHHHHHHHHHhc---cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCC
Confidence 01111122 2233333 3699999887542 246789999999999876653
No 221
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=59.42 E-value=26 Score=25.66 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
..-++++..+...|...+-.+|+.|.+ .|+.|..+=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~--~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAE--QGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHh--CCCEEEEEC
Confidence 356888888888999999999999999 999987643
No 222
>PRK06904 replicative DNA helicase; Validated
Probab=59.04 E-value=58 Score=33.23 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=32.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
|++...|+.|=..-.+.+|...+.. .|+.|.|++.+-..+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~q 264 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQ 264 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHH
Confidence 6777778999999999999877641 5999999998755543
No 223
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=58.69 E-value=1.5e+02 Score=29.17 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=21.6
Q ss_pred CceEEEEcCch--hhHHHHHhhcCCCeEEEecch
Q 012096 114 VVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 114 ~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~ 145 (471)
+.-+|=+.... .++...|++||||..++.|..
T Consensus 114 ~~gViasSaGNha~a~Ayaa~~LgipaTIVmP~~ 147 (457)
T KOG1250|consen 114 KAGVIASSAGNHAQAAAYAARKLGIPATIVMPVA 147 (457)
T ss_pred cCceEEecCccHHHHHHHHHHhcCCceEEEecCC
Confidence 35555554433 566678999999999975543
No 224
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=58.23 E-value=79 Score=28.61 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=33.3
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCC-CcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNP-NVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~r-Gh~Vt~~~~~~~~~~~ 57 (471)
+++...++.|=..-++.++..+.. . |+.|.|++.+...+.+
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~~~~~~ 57 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCCCHHHH
Confidence 566777788999999999988887 6 9999999987655433
No 225
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=58.10 E-value=1e+02 Score=28.02 Aligned_cols=46 Identities=17% Similarity=0.019 Sum_probs=36.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCC-cEEEEEECccchhhhcCC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPN-VFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rG-h~Vt~~~~~~~~~~~~~~ 60 (471)
|||+|..=++.|-..-.--|+++|.+ +| ++|.++=..++...-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~--~~~~~VLvVDaDpd~nL~~~L 47 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLS--KGGYNVLVVDADPDSNLPEAL 47 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHh--cCCceEEEEeCCCCCChHHhc
Confidence 58999999999988877777888888 65 999999887766555544
No 226
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=57.47 E-value=44 Score=29.16 Aligned_cols=101 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc-cchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE-EWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
.++.+=..+.|-++-...|+++|++...|+.|.+-+.. ...+...+.- ++.+....+|-.. ..
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~--~~~v~~~~~P~D~----------~~---- 85 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL--PDRVDVQYLPLDF----------PW---- 85 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG---GGG-SEEE---SS----------HH----
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC--CCCeEEEEeCccC----------HH----
Confidence 45555566789999999999999995459998887763 3333332221 1122333344111 11
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEe
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFW 142 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~ 142 (471)
.++.+++.++ ||++|.-..- +.-+..|++.|||++.+.
T Consensus 86 -------~~~rfl~~~~-----P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 86 -------AVRRFLDHWR-----PDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp -------HHHHHHHHH-------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred -------HHHHHHHHhC-----CCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 2344566664 8988755544 344456888899999973
No 227
>PRK06321 replicative DNA helicase; Provisional
Probab=57.05 E-value=72 Score=32.53 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=32.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~ 55 (471)
|++...|+.|=..-.+.+|...+.. .|..|.|++-+...+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHH
Confidence 6777888999999999999988741 599999999775543
No 228
>PRK06988 putative formyltransferase; Provisional
Probab=56.80 E-value=62 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||||+|+..+. ..+...++|.+ +||+|..+.+.
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~--~~~~i~~Vvt~ 34 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLA--RGVDVALVVTH 34 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHh--CCCCEEEEEcC
Confidence 57999986654 34666788888 89998877664
No 229
>PRK08760 replicative DNA helicase; Provisional
Probab=56.63 E-value=32 Score=35.11 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=32.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~ 55 (471)
+++...|+.|=..-.+.+|...+.+ .|+.|.|++.+...+
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ 271 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSAS 271 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHH
Confidence 6777788999999999999887641 599999999875554
No 230
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=56.49 E-value=2.1e+02 Score=28.14 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCC--Ccc----c------c--ccCCC--ceEeeccchHH---hhhhcccceeecc
Q 012096 297 SSVQMDEIVAGVRNSGVRFFWVSRGDT--SWF----K------D--GCVDR--GIVVPWCDQLE---VLCHSSIGGFWTH 357 (471)
Q Consensus 297 ~~~~~~~~~~al~~~~~~vi~~~~~~~--~~~----~------~--~~~~n--v~v~~~~pq~~---lL~~~~~~~~Ith 357 (471)
+...+..++++++..+..+...+.... ..+ . . ...++ +.+.+|+||.+ +|-.|++ -+-.
T Consensus 193 e~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--NfVR 270 (374)
T PF10093_consen 193 ENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWACDF--NFVR 270 (374)
T ss_pred CchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhCcc--ceEe
Confidence 445577788888877766666665432 111 0 0 01133 55679999754 8888887 4444
Q ss_pred CCcchHHHHHHcCCceec
Q 012096 358 CGLNSTLEAAYAGVPMLT 375 (471)
Q Consensus 358 gG~~s~~eal~~GvP~v~ 375 (471)
|==|...|..+|+|.|=
T Consensus 271 -GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 271 -GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred -cchHHHHHHHhCCCceE
Confidence 55699999999999964
No 231
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=56.44 E-value=25 Score=27.82 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+++.+.+..-|-.-+..++..|++ .||+|.++-..
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~--~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRK--AGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHH--TTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHH--CCCeEEEECCC
Confidence 7899999999999999999999999 99999988543
No 232
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.19 E-value=1.6e+02 Score=26.10 Aligned_cols=145 Identities=9% Similarity=-0.014 Sum_probs=73.0
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccC-CCceEeeccchHHhhhhcccceeeccCCcc
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCV-DRGIVVPWCDQLEVLCHSSIGGFWTHCGLN 361 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~-~nv~v~~~~pq~~lL~~~~~~~~IthgG~~ 361 (471)
+.++.|..|.++. ..+..|...+..+.++-......+....+ ..+.......+...+..+++ +|.--+..
T Consensus 11 k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adl--ViaaT~d~ 81 (202)
T PRK06718 11 KRVVIVGGGKVAG-------RRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFL--VIAATNDP 81 (202)
T ss_pred CEEEEECCCHHHH-------HHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceE--EEEcCCCH
Confidence 4488887776652 33455555677766553322122222112 23444444344455667777 88877766
Q ss_pred hHHHHHH----cCCceecccccccccchhh-----hhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHH
Q 012096 362 STLEAAY----AGVPMLTFPIMMDQVPNSK-----LIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKA 432 (471)
Q Consensus 362 s~~eal~----~GvP~v~~P~~~DQ~~na~-----~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (471)
.+.+.++ .++++-+ .|.+..+. .+.+. ++-+.+.. .. ... .-+..|++.|.+++.. ....
T Consensus 82 elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT-~G-~sP-~la~~lr~~ie~~~~~---~~~~ 150 (202)
T PRK06718 82 RVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVST-DG-ASP-KLAKKIRDELEALYDE---SYES 150 (202)
T ss_pred HHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEEC-CC-CCh-HHHHHHHHHHHHHcch---hHHH
Confidence 6555544 4555433 34433322 22222 33333333 11 111 1334577777776632 1246
Q ss_pred HHHHHHHHHHHHHHh
Q 012096 433 MSKRAREVQEICQEA 447 (471)
Q Consensus 433 ~~~~a~~l~~~~~~~ 447 (471)
|-+.+.+++..+++.
T Consensus 151 ~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 151 YIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777777664
No 233
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=54.16 E-value=2.1e+02 Score=27.66 Aligned_cols=374 Identities=13% Similarity=0.091 Sum_probs=176.4
Q ss_pred cEEEEE---cCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch--h-hhcCC------CCCCCCeEEEecCCCCCCch
Q 012096 13 CHIVAL---PYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL--S-FIGSG------HGNHNNIRFETIPNVIPSEL 80 (471)
Q Consensus 13 ~~il~~---~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~--~-~~~~~------~~~~~~~~~~~ip~~~~~~~ 80 (471)
..++|+ |..+.|-=.-+=.-.+.+.+....|...+++..-+. + .+.+. ...++++.|+-+....--+.
T Consensus 44 ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea 123 (465)
T KOG1387|consen 44 KTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEA 123 (465)
T ss_pred eEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeec
Confidence 445554 223444444444445666665567888887766222 1 11111 11245777777653222122
Q ss_pred hhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHH-HHhhcCCCeEEEecchHHHHHHHHhhHHHH
Q 012096 81 VRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVD-VGNRRNIPVASFWSMSASLFSVFHHFELLV 159 (471)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~-~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (471)
. ......++......+--.++.+++. .||+-|=.+.++.... +++..++|++.+...|....-+......+.
T Consensus 124 ~-~~~hfTllgQaigsmIl~~Eai~r~------~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq 196 (465)
T KOG1387|consen 124 S-TWKHFTLLGQAIGSMILAFEAIIRF------PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQRQ 196 (465)
T ss_pred c-cccceehHHHHHHHHHHHHHHHHhC------CchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHhhh
Confidence 1 1222333444444444445666653 6999998877755554 455778999999888877655444333211
Q ss_pred hcCCCCCCcccCCccccccCCCCCcCCcCCCCccccCCCchHHHHHHHHhhcc-ccccEEEEcchHHhhHHHHHHHHhcC
Q 012096 160 QNGHFPVELSERGEEVVDYIPGLASTKLADLPTIFYGSGRQTLQRALESVSKV-SKAQCLLLSSVYELEAKVNDTLKAKF 238 (471)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~~ip~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~ 238 (471)
. . .++....-..++.+...+... ...+.+..|+... +.+....+.. .
T Consensus 197 ~----------------s--------------~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT-~nHI~qiW~~-~ 244 (465)
T KOG1387|consen 197 K----------------S--------------GILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWT-NNHIKQIWQS-N 244 (465)
T ss_pred h----------------c--------------chhhhHHHHHHHHHHHHHHhccccceEEEecchhh-HHHHHHHhhc-c
Confidence 0 0 011101112334444444443 4456666776543 2232222222 1
Q ss_pred CCCccccccCCCCcccccccccccccCCCCCCchhccccccCCCCeEEEEEeCCCcCC-CHHHHHHHHHHHHhCC-----
Q 012096 239 PFPVYPIGPTIPYFEIKSNLLTSTSLNINNEPDNYFHWLDSQPDSSVLYVSLGSLWSV-SSVQMDEIVAGVRNSG----- 312 (471)
Q Consensus 239 ~~~~~~vGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~I~vs~GS~~~~-~~~~~~~~~~al~~~~----- 312 (471)
....|=|.+. -+++.+.....+.+-...+++|-.-.. ....++..+--+.+.+
T Consensus 245 --~~~iVyPPC~-------------------~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~ 303 (465)
T KOG1387|consen 245 --TCSIVYPPCS-------------------TEDLKSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASV 303 (465)
T ss_pred --ceeEEcCCCC-------------------HHHHHHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhcc
Confidence 1111112111 112332222222333566666655432 2222333333333222
Q ss_pred --CcEEEEEcCCC---C-------cc--ccccCCCceEeeccchHHh---hhhcccceeeccCCcc-----hHHHHHHcC
Q 012096 313 --VRFFWVSRGDT---S-------WF--KDGCVDRGIVVPWCDQLEV---LCHSSIGGFWTHCGLN-----STLEAAYAG 370 (471)
Q Consensus 313 --~~vi~~~~~~~---~-------~~--~~~~~~nv~v~~~~pq~~l---L~~~~~~~~IthgG~~-----s~~eal~~G 370 (471)
...+.+-+-.. + .. .-++++++.....+|..++ |..+.. -| |+=+| ++.|.+++|
T Consensus 304 ~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAG 380 (465)
T KOG1387|consen 304 SPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAG 380 (465)
T ss_pred CCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcC
Confidence 23333221111 0 00 1135678888888887664 444433 12 32222 788999998
Q ss_pred CceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhc
Q 012096 371 VPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAE 450 (471)
Q Consensus 371 vP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~ 450 (471)
.=+|+---.+--.+ -|... .|-.-.. ...|.++-+++|-+++..+..++..+|++|++-.+++.+.
T Consensus 381 lIpi~h~SgGP~lD---IV~~~--~G~~tGF------la~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~--- 446 (465)
T KOG1387|consen 381 LIPIVHNSGGPLLD---IVTPW--DGETTGF------LAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL--- 446 (465)
T ss_pred ceEEEeCCCCCcee---eeecc--CCcccee------ecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH---
Confidence 64443211111111 01100 1111110 1237788889998888765444556888888888888765
Q ss_pred CCCcHHHHHHHHHHH
Q 012096 451 NGSSITNFDAFLNDI 465 (471)
Q Consensus 451 ~g~~~~~~~~~~~~~ 465 (471)
.-..++...++++
T Consensus 447 --~F~kd~~~~i~kl 459 (465)
T KOG1387|consen 447 --KFDKDWENPICKL 459 (465)
T ss_pred --HHHHhHhHHHHHh
Confidence 3334444444443
No 234
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=53.65 E-value=1.3e+02 Score=25.16 Aligned_cols=141 Identities=8% Similarity=0.083 Sum_probs=66.8
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHH
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTL 364 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~ 364 (471)
.|-|-+||.. +....+++...|++.+..+-..+..-. +.|+ .+..++.. +..-.++.||+=+|...-.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH-----R~p~--~l~~~~~~---~~~~~~~viIa~AG~~a~L 69 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH-----RTPE--RLLEFVKE---YEARGADVIIAVAGMSAAL 69 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT-----TSHH--HHHHHHHH---TTTTTESEEEEEEESS--H
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc-----CCHH--HHHHHHHH---hccCCCEEEEEECCCcccc
Confidence 3555566665 466778888888888855443332211 1110 01111111 1222233499887764332
Q ss_pred HH---HHcCCceecccccccccchhhhhhhhh----cceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHHHHH
Q 012096 365 EA---AYAGVPMLTFPIMMDQVPNSKLIVEDW----KIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMSKRA 437 (471)
Q Consensus 365 ea---l~~GvP~v~~P~~~DQ~~na~~v~~~l----G~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~a 437 (471)
-. -..-.|+|.+|....+.....-+-..+ |+++..-. -. .-.++..++-.|-. +.| +.++++.
T Consensus 70 pgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~-i~---~~~nAA~~A~~ILa-~~d-----~~l~~kl 139 (150)
T PF00731_consen 70 PGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVG-IN---NGFNAALLAARILA-LKD-----PELREKL 139 (150)
T ss_dssp HHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-S-ST---HHHHHHHHHHHHHH-TT------HHHHHHH
T ss_pred hhhheeccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEE-cc---CchHHHHHHHHHHh-cCC-----HHHHHHH
Confidence 22 234799999999877554333221111 44433221 00 11233334333322 233 8899999
Q ss_pred HHHHHHHHHh
Q 012096 438 REVQEICQEA 447 (471)
Q Consensus 438 ~~l~~~~~~~ 447 (471)
+..++++++.
T Consensus 140 ~~~~~~~~~~ 149 (150)
T PF00731_consen 140 RAYREKMKEK 149 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHcc
Confidence 9988888763
No 235
>PRK00784 cobyric acid synthase; Provisional
Probab=53.61 E-value=59 Score=33.35 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=27.4
Q ss_pred EEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 14 HIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 14 ~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
.|+|... ...|=..-...|++.|++ +|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~--~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILAR--RGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHH--CCCeEecccc
Confidence 3555533 356899999999999999 9999987754
No 236
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=53.38 E-value=62 Score=31.90 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCC-cEEEEEECc-cchhhhcCCCCCCCCeEEEecC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPN-VFITFVVTE-EWLSFIGSGHGNHNNIRFETIP 73 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rG-h~Vt~~~~~-~~~~~~~~~~~~~~~~~~~~ip 73 (471)
|++|+++..+.-|+ .+|+-|++ +| ++|+++.-. ...+.+..... .++++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~--~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQ--NGDGEVTIADRSKEKCARIAELIG--GKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHh--CCCceEEEEeCCHHHHHHHHhhcc--ccceeEEec
Confidence 67899998876664 57899999 88 999999865 55555544321 145555554
No 237
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=53.06 E-value=52 Score=31.77 Aligned_cols=102 Identities=21% Similarity=0.245 Sum_probs=64.5
Q ss_pred eEeeccchHH-hhhhcccceeecc---CCcc-hHHHHHHcCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCc
Q 012096 335 IVVPWCDQLE-VLCHSSIGGFWTH---CGLN-STLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESL 409 (471)
Q Consensus 335 ~v~~~~pq~~-lL~~~~~~~~Ith---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~ 409 (471)
.+.+..+--+ +-.|.++ +|+| .|.| ...|+++.|-|+| -|+..+. .+|..-+.
T Consensus 256 sfegR~~~p~fla~~tD~--VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~---d~GYYY~~-------- 313 (364)
T PF10933_consen 256 SFEGRFDFPDFLAQHTDA--VVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLK---DVGYYYPD-------- 313 (364)
T ss_pred EEeeecChHHHHHhCCCE--EEeccccchhhHHHHHHHhcCCCcc---------cCcchhc---ccCcCCCC--------
Confidence 3444444333 3456777 9999 4444 6789999999997 5888887 57877765
Q ss_pred cCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHH
Q 012096 410 VTRDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLND 464 (471)
Q Consensus 410 ~~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~ 464 (471)
++..+=.+++.+++.+-+.+.+.|+++|+++=..+.- ....+++...+.
T Consensus 314 fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p------~n~~nv~~y~~~ 362 (364)
T PF10933_consen 314 FDAFEGARQLLRAIREHDADLDAYRARARRLLDRLSP------ENPANVRAYEAR 362 (364)
T ss_pred ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCC------CCHHHHHHHHHh
Confidence 4555544444454443334558999999887666632 334455554443
No 238
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=52.71 E-value=25 Score=29.52 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=37.4
Q ss_pred cccCCCC-cEEEEEcCCCccChHH-HHHHHHHHHhcCCCcEEEEEECccchhhhc
Q 012096 6 MKATGRM-CHIVALPYPGRGHINP-MMNLCKLLVSRNPNVFITFVVTEEWLSFIG 58 (471)
Q Consensus 6 ~~~~~~~-~~il~~~~~~~GH~~p-~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~ 58 (471)
|+++.++ |||+.. ..+.||..| ...+.++|+++..+|+|+++.+....+.+.
T Consensus 1 ~~~~~~~~~rIaWg-ITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk 54 (187)
T COG1036 1 MEMTEKKKKRIAWG-ITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVK 54 (187)
T ss_pred CcccccccceEEEE-EeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHH
Confidence 3444433 567664 445588887 889999999955589999999887666553
No 239
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=52.62 E-value=1.4e+02 Score=25.24 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
-|.+++.++.|=....+.+|-+... +|++|.|+-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG--HGYRVGVVQ 37 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 3778888899999988888888888 999999944
No 240
>PRK08006 replicative DNA helicase; Provisional
Probab=52.01 E-value=99 Score=31.53 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=32.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~ 55 (471)
|++..-|+.|=..-.+.+|...+.+ .|+.|.|++-+-..+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ 266 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGE 266 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHH
Confidence 6777789999999999999888741 599999999875443
No 241
>PRK14099 glycogen synthase; Provisional
Probab=50.80 E-value=24 Score=36.14 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=65.5
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHh---CCCcEEEEEcCCC---Ccc---ccccCCCc-eEeeccchHH-hh-hhcccc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRN---SGVRFFWVSRGDT---SWF---KDGCVDRG-IVVPWCDQLE-VL-CHSSIG 352 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~---~~~~vi~~~~~~~---~~~---~~~~~~nv-~v~~~~pq~~-lL-~~~~~~ 352 (471)
+++...|.... .+.+..+++|+.. .+.+++..-.++. +.+ .+..++++ .+.+|-.... ++ +.+++
T Consensus 296 ~li~~VgRL~~--~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDi- 372 (485)
T PRK14099 296 LLLGVISRLSW--QKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADA- 372 (485)
T ss_pred cEEEEEecCCc--cccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCE-
Confidence 34444555553 2223344444433 3566665443331 111 11234454 4567733332 23 34666
Q ss_pred eeec---cCCc-chHHHHHHcCCceecccccc--cccchhhhh---hhhhcceeeeecCCCCCCCccCHHHHHHHHHH--
Q 012096 353 GFWT---HCGL-NSTLEAAYAGVPMLTFPIMM--DQVPNSKLI---VEDWKIGWKVKKPEIGSESLVTRDEITELVKR-- 421 (471)
Q Consensus 353 ~~It---hgG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~v---~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~-- 421 (471)
|+. +-|. .+.+||+++|+|.|+....+ |--...... +.. +.|+.++. -++++|.++|.+
T Consensus 373 -fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~--------~d~~~La~ai~~a~ 442 (485)
T PRK14099 373 -LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP--------VTADALAAALRKTA 442 (485)
T ss_pred -EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC--------CCHHHHHHHHHHHH
Confidence 764 3444 37789999997766654322 322111110 101 36877775 389999999987
Q ss_pred -HhcC
Q 012096 422 -FMDL 425 (471)
Q Consensus 422 -~l~~ 425 (471)
+++|
T Consensus 443 ~l~~d 447 (485)
T PRK14099 443 ALFAD 447 (485)
T ss_pred HHhcC
Confidence 5555
No 242
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=50.72 E-value=23 Score=36.68 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=49.7
Q ss_pred cchHHhhhhcccceeecc-CCc-chHHHHHHcCCceeccccc-----ccccchhhhhhhhhcceeeeecCCCCCCCccCH
Q 012096 340 CDQLEVLCHSSIGGFWTH-CGL-NSTLEAAYAGVPMLTFPIM-----MDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTR 412 (471)
Q Consensus 340 ~pq~~lL~~~~~~~~Ith-gG~-~s~~eal~~GvP~v~~P~~-----~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~ 412 (471)
+|+.+++..|+++.|-+. ==| =|-+||+++|||.|..=+. ..+... ... .. |+-++-.. +. +.
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~-~~~-~~-GV~VvdR~-~~------n~ 530 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIE-DPE-EY-GVYVVDRR-DK------NY 530 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS--HHG-GG-TEEEE-SS-SS-------H
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhc-cCc-CC-cEEEEeCC-CC------CH
Confidence 367788888888777663 112 2889999999999987653 222222 222 23 66554443 32 55
Q ss_pred HHHHHHHHH----HhcCCchhHHHHHHHHHHHHHHH
Q 012096 413 DEITELVKR----FMDLNNDERKAMSKRAREVQEIC 444 (471)
Q Consensus 413 ~~l~~~i~~----~l~~~~~~~~~~~~~a~~l~~~~ 444 (471)
++..+.|.+ +..-...++...|++++++++++
T Consensus 531 ~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 531 DESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 555444444 43333333456777777777654
No 243
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=50.60 E-value=1.2e+02 Score=29.96 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.6
Q ss_pred CCcEEEEEc-CCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 11 RMCHIVALP-YPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 11 ~~~~il~~~-~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
.+++|+|+. .|..|. .+|+.|++ +||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~--~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTL--SGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHH--CCCeEEEeCCC
Confidence 457899997 666664 68999999 99999999864
No 244
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.57 E-value=47 Score=28.33 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEE
Q 012096 25 HINPMMNLCKLLVSRNPNVFITF 47 (471)
Q Consensus 25 H~~p~l~La~~L~~~~rGh~Vt~ 47 (471)
|.....+|+++|.++ +|.++.+
T Consensus 1 H~~aA~Al~eal~~~-~~~~~~v 22 (169)
T PF06925_consen 1 HNSAARALAEALERR-RGPDAEV 22 (169)
T ss_pred CHHHHHHHHHHHHhh-cCCCCEE
Confidence 778888999999872 3444333
No 245
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=50.31 E-value=83 Score=28.11 Aligned_cols=29 Identities=10% Similarity=-0.043 Sum_probs=24.9
Q ss_pred CCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 20 YPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 20 ~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
....|-..-.+.|++.|++ +|++|.++=+
T Consensus 8 ~t~~GKT~vs~~L~~~l~~--~g~~v~~~KP 36 (222)
T PRK00090 8 DTDVGKTVVTAALAQALRE--AGYSVAGYKP 36 (222)
T ss_pred CCCcCHHHHHHHHHHHHHH--cCCceEEEee
Confidence 3467999999999999999 9999988653
No 246
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=49.23 E-value=25 Score=31.93 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=27.3
Q ss_pred cEEEEEcCCCccChHH------------HHHHHHHHHhcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINP------------MMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p------------~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|||++..+|+.=.+.| -.+||++|.+ +||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~--~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLA--AGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHh--CCCEEEEEECc
Confidence 4666666666555544 4688999999 99999998754
No 247
>PRK05636 replicative DNA helicase; Provisional
Probab=48.85 E-value=49 Score=34.04 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=31.8
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
|++...|+.|=..-.+.+|...+.+ .|..|.|++.+...+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~q 308 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSE 308 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHH
Confidence 6777788999999999999877641 5889999987755443
No 248
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=48.73 E-value=68 Score=27.18 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=51.3
Q ss_pred chhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeec-cchHHhhhhc
Q 012096 271 DNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPW-CDQLEVLCHS 349 (471)
Q Consensus 271 ~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~-~pq~~lL~~~ 349 (471)
.++-++|.... ...++.|.. .....+.++..+.+-+++=+++.... ..+.........++ .+...++...
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~-~~~~~~~~~i~~~~~~~Rk~~m~~~ 91 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDF-AGNPYLTIKVKTGMNFARNFILVRS 91 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhc-cCCCCceEEEECCCcchHHHHHHHH
Confidence 34456676543 455553332 23344555555556666555543221 01111111222343 4455555444
Q ss_pred ccceeeccCCcchHHH---HHHcCCceecccc
Q 012096 350 SIGGFWTHCGLNSTLE---AAYAGVPMLTFPI 378 (471)
Q Consensus 350 ~~~~~IthgG~~s~~e---al~~GvP~v~~P~ 378 (471)
+-..++--||.||+.| ++.+++|+++++.
T Consensus 92 sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 92 ADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3344555688898765 5889999999875
No 249
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=48.57 E-value=25 Score=30.40 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=33.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
||++...++ +...-...+.+.|++ +|++|.++.++....++..
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~--~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTK--LGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHH--CCCEEEEEEChHHHhhccH
Confidence 566655555 456677799999999 9999999999987777653
No 250
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=48.44 E-value=1.9e+02 Score=25.71 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=72.1
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCcccccc-CCCceEeeccchHHhhhhcccceeeccCCcc
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGC-VDRGIVVPWCDQLEVLCHSSIGGFWTHCGLN 361 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~-~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~ 361 (471)
+.++.|..|.+.. .-+..|...+..+.+.-+...+.+..-. ..++....--.+...+..+.+ +|..-|..
T Consensus 10 k~vlVvGgG~va~-------rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~l--Vi~at~d~ 80 (205)
T TIGR01470 10 RAVLVVGGGDVAL-------RKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFL--VIAATDDE 80 (205)
T ss_pred CeEEEECcCHHHH-------HHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEE--EEECCCCH
Confidence 3488887776652 2334555677777665433222221111 124444322222334666666 77777765
Q ss_pred hH-----HHHHHcCCceec--ccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcCCchhHHHHH
Q 012096 362 ST-----LEAAYAGVPMLT--FPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDLNNDERKAMS 434 (471)
Q Consensus 362 s~-----~eal~~GvP~v~--~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 434 (471)
.+ .+|-..|+|+-+ -|-..| +..-..+.+. ++-+.+.. . +... .-...|++.|.+++.... ..|-
T Consensus 81 ~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g-~l~iaisT-~-G~sP-~la~~lr~~ie~~l~~~~---~~~~ 152 (205)
T TIGR01470 81 ELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRS-PVVVAISS-G-GAAP-VLARLLRERIETLLPPSL---GDLA 152 (205)
T ss_pred HHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcC-CEEEEEEC-C-CCCc-HHHHHHHHHHHHhcchhH---HHHH
Confidence 33 344457888833 333333 1222223322 23333433 1 1111 234557888888875321 4566
Q ss_pred HHHHHHHHHHHHh
Q 012096 435 KRAREVQEICQEA 447 (471)
Q Consensus 435 ~~a~~l~~~~~~~ 447 (471)
+...+++..+++.
T Consensus 153 ~~~~~~R~~~k~~ 165 (205)
T TIGR01470 153 TLAATWRDAVKKR 165 (205)
T ss_pred HHHHHHHHHHHhh
Confidence 6666666666653
No 251
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=48.23 E-value=46 Score=33.29 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=20.9
Q ss_pred CceEEEEcCchhhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFLAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~~~~~~~A~~lgIP~v~~ 141 (471)
+||++|.... +..+|+++|||++.+
T Consensus 350 ~pDl~Ig~s~---~~~~a~~~giP~~r~ 374 (416)
T cd01980 350 RPDLAIGTTP---LVQYAKEKGIPALYY 374 (416)
T ss_pred CCCEEEeCCh---hhHHHHHhCCCEEEe
Confidence 6999998833 556899999999985
No 252
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=48.21 E-value=58 Score=29.11 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 012096 12 MCHIVALPYPGRG--HINPMMNLCKLLVS 38 (471)
Q Consensus 12 ~~~il~~~~~~~G--H~~p~l~La~~L~~ 38 (471)
||+|++..|.-+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNG 29 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccc
Confidence 6889988886555 59999999999977
No 253
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=48.03 E-value=66 Score=29.20 Aligned_cols=100 Identities=7% Similarity=0.055 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCcc--ChHH--HHHHHHHHHhcCCCcEEEEEECccc--hhhhcCCCCCCCCeE--EEecCCCCCCchhhh
Q 012096 12 MCHIVALPYPGRG--HINP--MMNLCKLLVSRNPNVFITFVVTEEW--LSFIGSGHGNHNNIR--FETIPNVIPSELVRA 83 (471)
Q Consensus 12 ~~~il~~~~~~~G--H~~p--~l~La~~L~~~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~~--~~~ip~~~~~~~~~~ 83 (471)
...|+|.++.+.. .+-+ +..|++.|.+ +|.+|.+++++.. .+....... ++. ...+..
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~--~~~~vvl~g~~~~~~~~~~~~~~~---~~~~~~~~~~~--------- 170 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKE--RGYRVVLLGGPEEQEKEIADQIAA---GLQNPVINLAG--------- 170 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCC--CT-EEEE--SSHHHHHHHHHHHHT---THTTTTEEETT---------
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHh--hCceEEEEccchHHHHHHHHHHHH---hcccceEeecC---------
Confidence 3457777776542 2222 6899999999 8988888887765 222211110 110 111110
Q ss_pred hcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecch
Q 012096 84 RDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~ 145 (471)
...+.++..-+. .-|++|+-- .+.+-+|..+|+|+|.++...
T Consensus 171 --------------~~~l~e~~ali~----~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 --------------KTSLRELAALIS----RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp --------------TS-HHHHHHHHH----TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred --------------CCCHHHHHHHHh----cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 011333333343 489999763 346779999999999986543
No 254
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=47.96 E-value=1.3e+02 Score=30.26 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=25.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+.++..+.. .+++++.|.+ -|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~e--lGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLE--SGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHH--CCCEEEEEecC
Confidence 7777777665 8899999999 99999988765
No 255
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=47.92 E-value=28 Score=34.20 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=33.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|=..-++.++..+.+ .|..|.+++.++..+.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEESPEQI 125 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcCHHHH
Confidence 566777888999999999999999 89999999887655543
No 256
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=47.78 E-value=2.3e+02 Score=26.24 Aligned_cols=120 Identities=15% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC--CCCC-CchhhhhcHH
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP--NVIP-SELVRARDFL 87 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip--~~~~-~~~~~~~~~~ 87 (471)
+...|+|...|+-|--.-.-+|++.|++ +|++|-+++-.+...+.-.+ ...+.++...+. ++.. ......+.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~--~g~~VaVlAVDPSSp~tGGA-lLGDRiRM~~~~~d~~vfIRS~atRG~lG 104 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRE--RGKRVAVLAVDPSSPFTGGA-LLGDRIRMQELSRDPGVFIRSMATRGSLG 104 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHH--TT--EEEEEE-GGGGCC----SS--GGGCHHHHTSTTEEEEEE---SSHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhh--cCCceEEEEECCCCCCCCCc-ccccHHHhcCcCCCCCEEEeecCcCCCCC
Confidence 3457899999999999999999999999 99999999976655433221 112233332221 1110 0111123334
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchh--hHHHHHhhcCCCeEEEec
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLA--WAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~--~~~~~A~~lgIP~v~~~~ 143 (471)
..-... .+.+.-+.. .+||+||++.... .-..+++.-+.-++.+.|
T Consensus 105 Gls~~t--------~~~v~ll~a--aG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 105 GLSRAT--------RDAVRLLDA--AGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp HHHHHH--------HHHHHHHHH--TT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CccHhH--------HHHHHHHHH--cCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 333333 222333332 2799999997663 344577777776666544
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=47.65 E-value=27 Score=32.25 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=37.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
...++|+..+|.|=..=..+++.+|.+ +|+.|+|++.++....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHH
Confidence 346899999988877778899999998 9999999998876655543
No 258
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.60 E-value=1.1e+02 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.++++|+.. |. . -+++|+.|.+ +|++|+++....
T Consensus 5 ~k~v~iiG~---g~-~-G~~~A~~l~~--~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGA---GV-S-GLALAKFLKK--LGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECC---CH-H-HHHHHHHHHH--CCCEEEEEeCCc
Confidence 356766643 33 2 2599999999 999999987643
No 259
>PRK08840 replicative DNA helicase; Provisional
Probab=47.54 E-value=1.1e+02 Score=31.04 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
+++..-|+.|=..-.+.+|...+.. .|+.|.|++-+-..+.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~q 260 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQ 260 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHH
Confidence 6777778999999999999888741 5999999998755543
No 260
>PRK11823 DNA repair protein RadA; Provisional
Probab=47.41 E-value=28 Score=35.17 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...++.|=..-++.++..+.+ +|.+|.+++.++..+.+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEESASQI 123 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccccHHHH
Confidence 4677777899999999999999998 89999999988766554
No 261
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=47.28 E-value=25 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=32.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
||++.-.++.|=+.-.+.+.++|++ .|++|.++.++......
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~--~g~~V~vI~S~~A~~~~ 43 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVD--EGAEVTPIVSETVQTTD 43 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHh--CcCEEEEEEchhHHHHH
Confidence 6777777766666666799999999 99999999988765433
No 262
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=47.23 E-value=25 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|++|.++..+++| .+||+.|.+ .||+|+++..+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~--ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLAR--NGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHh--cCCeeEEEecC
Confidence 5789999999988 589999999 99999999975
No 263
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=47.09 E-value=42 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=28.7
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSR 320 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~ 320 (471)
.+|+++||........++..+.++.+.+.--|+..+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S 38 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVS 38 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 699999999988888899999999988754344443
No 264
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=46.92 E-value=75 Score=32.53 Aligned_cols=43 Identities=14% Similarity=0.007 Sum_probs=37.1
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIG 58 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~ 58 (471)
-+++...|+.|=..-.+.++.+.++ +|..|.+++.++..+.+.
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~eEs~~~i~ 307 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACA--NKERAILFAYEESRAQLL 307 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeCCHHHHH
Confidence 4788888899999999999999999 999999999887665543
No 265
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=46.75 E-value=1.8e+02 Score=24.99 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=24.0
Q ss_pred CceEEEEcCch---hhHHHHHhhcCCCeEEEec
Q 012096 114 VVSAIIVDTFL---AWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 114 ~~D~vI~D~~~---~~~~~~A~~lgIP~v~~~~ 143 (471)
+||+|+..... ..+..+|.++|.|++.-+.
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~ 123 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQISDVT 123 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCcceeEE
Confidence 59999977654 5677899999999998433
No 266
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.58 E-value=43 Score=31.87 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
..|||+|+..+..| .++|+.|.+ .||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~--~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASA--NGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHH--CCCEEEEEeCCC
Confidence 35789999777665 578999999 999999998653
No 267
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=46.18 E-value=2.4e+02 Score=25.85 Aligned_cols=38 Identities=16% Similarity=0.064 Sum_probs=29.9
Q ss_pred CcEEEEEcC--CCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPY--PGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~--~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|++|.++.. ++.|=......||..|++ +|++|.++-..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~--~g~~vl~iD~D 40 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKAS--KGQKPLCIDTD 40 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 345555544 578899999999999999 99999988554
No 268
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=46.18 E-value=1.1e+02 Score=29.28 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|||+|+..+.. .+...++|.+ +||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~--~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELRE--DNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHh--CCCcEEEEEcC
Confidence 58888866653 3677789999 89998766653
No 269
>PLN02939 transferase, transferring glycosyl groups
Probab=46.18 E-value=37 Score=37.51 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=32.9
Q ss_pred cCCCCcEEEEEcCC------CccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 8 ATGRMCHIVALPYP------GRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 8 ~~~~~~~il~~~~~------~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
++...|||++++.- +.|=-.-.-+|.++|++ .||+|.+++|..
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~--~GhdV~VIlP~Y 525 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQK--KGHLVEIVLPKY 525 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 34566999998762 22444556789999999 999999999864
No 270
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=46.02 E-value=26 Score=31.06 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+=|++..+|+.|-....-.||++|.+ ++|+|...+..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~--~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQ--EIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHH--hhhhccccchh
Confidence 445677778999999999999999999 99999876653
No 271
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=45.69 E-value=2e+02 Score=28.02 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=49.4
Q ss_pred CCHHHHHH-HHHHHHhCC-CcEEEEEcCCC-Ccccc-----ccCCCceEeeccchHH---hhhhcccceeeccCC----c
Q 012096 296 VSSVQMDE-IVAGVRNSG-VRFFWVSRGDT-SWFKD-----GCVDRGIVVPWCDQLE---VLCHSSIGGFWTHCG----L 360 (471)
Q Consensus 296 ~~~~~~~~-~~~al~~~~-~~vi~~~~~~~-~~~~~-----~~~~nv~v~~~~pq~~---lL~~~~~~~~IthgG----~ 360 (471)
...+.+.+ +-+.+.+.+ .+|+..-.+.. ..+++ .+.+.+.+.+-+|+.. +|..-++ |++-.= .
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc 285 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFC 285 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHH
Confidence 34556555 445556554 77776433321 11211 2456788999999754 6777777 776542 2
Q ss_pred chHHHHHHcCCceecc
Q 012096 361 NSTLEAAYAGVPMLTF 376 (471)
Q Consensus 361 ~s~~eal~~GvP~v~~ 376 (471)
-++.||+.+|.|+|..
T Consensus 286 ~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 286 MVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHhCCCEEEEe
Confidence 3678999999999864
No 272
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=45.63 E-value=2e+02 Score=24.81 Aligned_cols=95 Identities=11% Similarity=0.154 Sum_probs=54.7
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE---Cc--cch-hhhcCCCCCCCCeEEEecCCCCCCchhhhhcHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV---TE--EWL-SFIGSGHGNHNNIRFETIPNVIPSELVRARDFL 87 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~---~~--~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 87 (471)
-|.+++..+.|=..-.+.+|-+... +|++|.++- .. ..+ ..+++. ++.+.....++.-......
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~--~g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g~~~~~~~~~--- 76 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALG--HGKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTGFTWETQNRE--- 76 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCCCeecCCCcH---
Confidence 4778888999999999999988888 999997663 22 111 122222 6777777655421111111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL 124 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~ 124 (471)
... ......++...+.+.. .++|+||.|...
T Consensus 77 ~~~----~~~~~~~~~a~~~l~~--~~~DlvVLDEi~ 107 (173)
T TIGR00708 77 ADT----AIAKAAWQHAKEMLAD--PELDLVLLDELT 107 (173)
T ss_pred HHH----HHHHHHHHHHHHHHhc--CCCCEEEehhhH
Confidence 111 1122223333333332 379999999766
No 273
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.59 E-value=1.6e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCch---hhHHHHHhhcCCCeEE
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFL---AWAVDVGNRRNIPVAS 140 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~---~~~~~~A~~lgIP~v~ 140 (471)
...++.++++++ +-++.+.|... .-+..+|...|||++.
T Consensus 137 ~~aM~~~m~~Lk----~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK----ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH----HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 445777888887 58999999876 3456789999999998
No 274
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=45.24 E-value=83 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC
Q 012096 26 INPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP 73 (471)
Q Consensus 26 ~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip 73 (471)
-.-++.+|+.|.+ .|+++. ++....+.+... |+....+.
T Consensus 10 K~~l~~lAk~L~~--lGf~I~--AT~GTAk~L~e~-----GI~v~~V~ 48 (187)
T cd01421 10 KTGLVEFAKELVE--LGVEIL--STGGTAKFLKEA-----GIPVTDVS 48 (187)
T ss_pred cccHHHHHHHHHH--CCCEEE--EccHHHHHHHHc-----CCeEEEhh
Confidence 3457899999999 999983 566677778777 66655554
No 275
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=45.08 E-value=1.2e+02 Score=29.44 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=51.6
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCC-Cc--eEee--cc----c--------------
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVD-RG--IVVP--WC----D-------------- 341 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~-nv--~v~~--~~----p-------------- 341 (471)
+++.+.||.+...+. .++++.+++.++++.|......-. ....|. ++ ..++ .+ +
T Consensus 4 i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e-~~l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 80 (352)
T PRK12446 4 IVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIE-KTIIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMKGV 80 (352)
T ss_pred EEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCccc-cccCcccCCcEEEEeccCcCCCchHHHHHHHHHHHHHH
Confidence 788888888875443 335566777789999986543200 001111 01 1110 00 0
Q ss_pred -h-HHhhh--hcccceeeccCCcch---HHHHHHcCCceecc
Q 012096 342 -Q-LEVLC--HSSIGGFWTHCGLNS---TLEAAYAGVPMLTF 376 (471)
Q Consensus 342 -q-~~lL~--~~~~~~~IthgG~~s---~~eal~~GvP~v~~ 376 (471)
+ ..++. +|++ +|++||+-| ...|...|+|+++.
T Consensus 81 ~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 81 MDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 0 11233 3566 999999986 89999999999763
No 276
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.99 E-value=29 Score=31.61 Aligned_cols=43 Identities=14% Similarity=0.011 Sum_probs=33.2
Q ss_pred EEEEcCCCccCh-HHHHHHHHHHHhcCC--CcEEEEEECccchhhhcCC
Q 012096 15 IVALPYPGRGHI-NPMMNLCKLLVSRNP--NVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 15 il~~~~~~~GH~-~p~l~La~~L~~~~r--Gh~Vt~~~~~~~~~~~~~~ 60 (471)
|++.-.++ |+. .-.+.|++.|++ . ||+|.++.++...+++...
T Consensus 2 i~~~itGs-~~~~~~~~~l~~~L~~--~~~g~~V~vv~T~~a~~~i~~~ 47 (234)
T TIGR02700 2 IGWGITGA-GHLLVESFQVMKELKR--EIEELRVSTFVSRAGEEVVRMY 47 (234)
T ss_pred eEEEEeCc-cHhHHHHHHHHHHHHh--hcCCCeEEEEEChhHHhHHhhh
Confidence 44433333 455 689999999999 8 9999999999888877665
No 277
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=44.69 E-value=86 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=25.6
Q ss_pred CCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 21 PGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 21 ~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+.|=..-.+.||..|++ .|++|.++=..
T Consensus 9 gG~GKTt~a~~LA~~la~--~g~~vllvD~D 37 (169)
T cd02037 9 GGVGKSTVAVNLALALAK--LGYKVGLLDAD 37 (169)
T ss_pred CcCChhHHHHHHHHHHHH--cCCcEEEEeCC
Confidence 688999999999999999 99999997543
No 278
>PRK09165 replicative DNA helicase; Provisional
Probab=44.68 E-value=94 Score=31.97 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=32.9
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcC-------------CCcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRN-------------PNVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~-------------rGh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|=..-.+.+|...+... .|..|.|++-+...+.+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 67777789999999999988877511 27899999987665443
No 279
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=44.51 E-value=50 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred cceeeccCCcc------hHHHHHHcCCceecccc
Q 012096 351 IGGFWTHCGLN------STLEAAYAGVPMLTFPI 378 (471)
Q Consensus 351 ~~~~IthgG~~------s~~eal~~GvP~v~~P~ 378 (471)
.++++++.|-| .+.||...++|||++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 33377777744 77889999999999964
No 280
>PRK06849 hypothetical protein; Provisional
Probab=44.43 E-value=43 Score=33.12 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
++++|+|..... ...+.+++.|.+ .||+|.++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~--~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHN--AGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 467888885443 268999999999 999999997764
No 281
>PRK07206 hypothetical protein; Provisional
Probab=44.25 E-value=77 Score=31.57 Aligned_cols=34 Identities=12% Similarity=-0.070 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|++|+++..... ...+++++++ .|+++.+++...
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~--~G~~~v~v~~~~ 35 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKK--RGIEPIAVTSSC 35 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHH--cCCeEEEEEcCC
Confidence 346777776433 3468999999 999999888754
No 282
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=44.14 E-value=48 Score=29.26 Aligned_cols=41 Identities=10% Similarity=-0.104 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
+..+|++.+.++.-|-....-++..|.. .|++|+++...-.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~--~G~~vi~LG~~vp 123 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRA--NGFDVIDLGRDVP 123 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh--CCcEEEECCCCCC
Confidence 3468999999999999999999999999 9999999987643
No 283
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=43.79 E-value=2.3e+02 Score=25.00 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=32.3
Q ss_pred CcEEEEEcCC-CccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYP-GRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~-~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|.++-|+.++ ..|-..-++.-++.... +|-.|.++++.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~i 42 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPAI 42 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEeccc
Confidence 4566666666 55899999999999999 999999999863
No 284
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=43.60 E-value=1.1e+02 Score=30.62 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
+++...|+.|=..-.+.+|..++.. .|+.|.|++.+...+.+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQL 239 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHH
Confidence 6777778999999999999887641 59999999988655544
No 285
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=43.34 E-value=31 Score=28.17 Aligned_cols=37 Identities=8% Similarity=-0.037 Sum_probs=28.9
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
.+-.+.-.+=++..|++ +||+|++.+.+.....++-.
T Consensus 9 ~Pvq~p~alYl~~~Lk~--~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKK--KGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp STTHHHHHHHHHHHHHC--TTEEEEEEE-HHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHh--cCCeEEEecCHHHHhHhhhc
Confidence 44555667888999999 99999999999888777543
No 286
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=42.76 E-value=43 Score=26.82 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=33.8
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|+++.+.++..|.....-++.-|+. .|++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~--~G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRD--AGFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHH--CCCEEEECCCCC
Confidence 5889999999999999999999999 999999999753
No 287
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=42.76 E-value=3.4e+02 Score=31.12 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=33.9
Q ss_pred cccCCCCcEEEEEcCCCc--cC----hHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 6 MKATGRMCHIVALPYPGR--GH----INPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~--GH----~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|...++..||+++..+.. |+ =.....++++|++ .|++|.++.+..
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e--~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE--EGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH--cCCEEEEEeCCc
Confidence 334455678999988753 43 3367789999999 999999998765
No 288
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.66 E-value=52 Score=27.65 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcC--CCceEEEEcCch----------hhHHHHHhhcCCCeEEEecchH
Q 012096 101 FEKVLDFLQVEA--PVVSAIIVDTFL----------AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 101 ~~~ll~~l~~~~--~~~D~vI~D~~~----------~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
+++++.+++.-. ..||+|++..-. .-+..+|+++|+|++-.+....
T Consensus 109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 566777776432 589999987643 2456789999999998755443
No 289
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=42.36 E-value=43 Score=30.97 Aligned_cols=39 Identities=18% Similarity=0.028 Sum_probs=28.1
Q ss_pred HHHHHHHhhhcCCCceEEEEcCch------hhHHHHHhhcCCCeEEEecc
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFL------AWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~------~~~~~~A~~lgIP~v~~~~~ 144 (471)
+...++++ +||+|++...+ .-+..+|+.+|+|++.+...
T Consensus 104 La~ai~~~-----~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKA-----GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHh-----CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 44445553 49999976554 25667999999999997554
No 290
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=42.29 E-value=52 Score=33.39 Aligned_cols=117 Identities=14% Similarity=0.089 Sum_probs=58.0
Q ss_pred CccChHHHHHHHHHHHhc------CCCc----EEEEEEC---cc----chhhhcCCCCCCCCeEEEecCCCCCCc----h
Q 012096 22 GRGHINPMMNLCKLLVSR------NPNV----FITFVVT---EE----WLSFIGSGHGNHNNIRFETIPNVIPSE----L 80 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~------~rGh----~Vt~~~~---~~----~~~~~~~~~~~~~~~~~~~ip~~~~~~----~ 80 (471)
+.|.+--.+.+|++|.+. -.|- +|.++|- .. +...+++... .++.....+|=+.... .
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~g-t~~a~IlRvPF~~~~gi~~kw 373 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSG-TENARILRVPFGPEKGILRKW 373 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETT-ESSEEEEEE-ESESTEEE-S-
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCC-CCCcEEEEecCCCCcchhhhc
Confidence 346777788999888640 0243 3655552 11 1111111110 1245666666222211 1
Q ss_pred hhhhcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecch
Q 012096 81 VRARDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~ 145 (471)
...-+++.+++.+.... .+++.+++. ..||+|+..+.. ..|..+++++|||...+..+.
T Consensus 374 isrf~lWPyLe~fa~d~---~~~i~~e~~---~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 374 ISRFDLWPYLEEFADDA---EREILAELQ---GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp --GGG-GGGHHHHHHHH---HHHHHHHHT---S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred cchhhchhhHHHHHHHH---HHHHHHHhC---CCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 11124566666665443 233445554 379999977544 567789999999998864443
No 291
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=42.27 E-value=49 Score=33.51 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=35.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...|+.|=..-++.++..+.+ +|+.|.|++.++..+.+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGEESLQQI 137 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECcCCHHHH
Confidence 3667777899999999999999999 89999999988666544
No 292
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.18 E-value=50 Score=29.21 Aligned_cols=38 Identities=11% Similarity=-0.058 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
..++++.+.++..|-....-++..|+. .|++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~--~G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEA--NGFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHH--CCCEEEECCCC
Confidence 468999999999999999999999999 99999988754
No 293
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=42.10 E-value=2.1e+02 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=22.0
Q ss_pred ceeeccCCcc------hHHHHHHcCCceecccc
Q 012096 352 GGFWTHCGLN------STLEAAYAGVPMLTFPI 378 (471)
Q Consensus 352 ~~~IthgG~~------s~~eal~~GvP~v~~P~ 378 (471)
.++++|+|-| .+.+|...++|||++.-
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3388888854 78899999999999963
No 294
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.87 E-value=28 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|++|.|+..+..| ..+|+.|.+ .||+|+++-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~--~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAK--AGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHH--TTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHh--cCCeEEeecc
Confidence 6789999887654 688999999 9999998863
No 295
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=41.73 E-value=29 Score=33.52 Aligned_cols=42 Identities=17% Similarity=0.082 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
||||+|+..+..| ..+|..|.+ .||+|+++......+.+...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~--~G~~V~~~~r~~~~~~~~~~ 43 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAA--AGADVTLIGRARIGDELRAH 43 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHh--cCCcEEEEecHHHHHHHHhc
Confidence 4689999888766 467889999 99999999875433444433
No 296
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=41.65 E-value=1.9e+02 Score=27.19 Aligned_cols=42 Identities=7% Similarity=0.092 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
+++|+|+..+..|. .+|+.|++ +||.|.++......+.....
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~--~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKE--AGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHH--cCCeEEEEeecCcHHHHHHH
Confidence 56899998887775 58999999 99999999988776555443
No 297
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=41.57 E-value=24 Score=27.74 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=50.5
Q ss_pred EEEEeCCCcCC-CHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeecc--chHHhhhhcccceeeccC---C
Q 012096 286 LYVSLGSLWSV-SSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWC--DQLEVLCHSSIGGFWTHC---G 359 (471)
Q Consensus 286 I~vs~GS~~~~-~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~--pq~~lL~~~~~~~~Ithg---G 359 (471)
||++..- ... .......+.++|++.+..+. .+.+.+..... .+......+ -....+..|++-+++-.+ +
T Consensus 1 IYlAgp~-F~~~~~~~~~~~~~~L~~~g~~v~--~P~~~~~~~~~--~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~d 75 (113)
T PF05014_consen 1 IYLAGPF-FSEEQKARVERLREALEKNGFEVY--SPQDNDENDEE--DSQEWAREIFERDLEGIRECDIVIANLDGFRPD 75 (113)
T ss_dssp EEEESGG-SSHHHHHHHHHHHHHHHTTTTEEE--GGCTCSSS--T--TSHHCHHHHHHHHHHHHHHSSEEEEEECSSS--
T ss_pred CEEeCCc-CCHHHHHHHHHHHHHHHhCCCEEE--ecccccccccc--ccchHHHHHHHHHHHHHHHCCEEEEECCCCCCC
Confidence 5665333 322 23446678899999888554 22211111000 111111111 134467888886676666 8
Q ss_pred cchHHHH---HHcCCceeccccccc
Q 012096 360 LNSTLEA---AYAGVPMLTFPIMMD 381 (471)
Q Consensus 360 ~~s~~ea---l~~GvP~v~~P~~~D 381 (471)
.||..|. .+.|+|++++-.-..
T Consensus 76 ~Gt~~ElG~A~algkpv~~~~~d~~ 100 (113)
T PF05014_consen 76 SGTAFELGYAYALGKPVILLTEDDR 100 (113)
T ss_dssp HHHHHHHHHHHHTTSEEEEEECCCC
T ss_pred CcHHHHHHHHHHCCCEEEEEEcCCc
Confidence 9999996 778999998765433
No 298
>PRK05380 pyrG CTP synthetase; Validated
Probab=41.56 E-value=80 Score=32.49 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=34.2
Q ss_pred CcEEEEEcCC---CccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 12 MCHIVALPYP---GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 12 ~~~il~~~~~---~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
|+|++|++++ +.|-=.-.-+|+..|+. ||++|++.=-..+...
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~--~g~~v~~~K~DpYlNv 46 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKA--RGLKVTIQKLDPYINV 46 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHh--CCCceEEEeecccccc
Confidence 4688999987 44566678899999999 9999999887665543
No 299
>PRK09739 hypothetical protein; Provisional
Probab=41.49 E-value=62 Score=28.46 Aligned_cols=37 Identities=5% Similarity=-0.101 Sum_probs=23.1
Q ss_pred CCcEEEEEcC-CCc-cChHH-HHHHHHHHHhcCCCcEEEEEE
Q 012096 11 RMCHIVALPY-PGR-GHINP-MMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 11 ~~~~il~~~~-~~~-GH~~p-~l~La~~L~~~~rGh~Vt~~~ 49 (471)
+||||+++.. |-. |...- .-.+++.|.+ .||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~--~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQE--RGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHH--CCCEEEEEE
Confidence 4778877755 433 22222 3445677888 899998765
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=41.02 E-value=1.8e+02 Score=29.30 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=34.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCC-CcEEEEEECccchh
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNP-NVFITFVVTEEWLS 55 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~r-Gh~Vt~~~~~~~~~ 55 (471)
.-|+++..++.|=..-...||..|++ + |+.|.+++...++.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~--~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKK--KKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--hcCCcEEEEEccccch
Confidence 45667777799999999999999999 8 99999999875543
No 301
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.63 E-value=46 Score=30.94 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=36.1
Q ss_pred cccceeeccCCcchHHHHHH------cCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHH
Q 012096 349 SSIGGFWTHCGLNSTLEAAY------AGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 349 ~~~~~~IthgG~~s~~eal~------~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 422 (471)
+++ +|+-||=||+..++. .++|++.+-. - .+|..-+ ..++++.+++.++
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~--------G------~lGFL~~---------~~~~~~~~~l~~i 90 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT--------G------HLGFYTD---------WRPFEVDKLVIAL 90 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC--------C------Cceeccc---------CCHHHHHHHHHHH
Confidence 455 999999999999986 4778877632 1 2333332 3677788888888
Q ss_pred hcC
Q 012096 423 MDL 425 (471)
Q Consensus 423 l~~ 425 (471)
+++
T Consensus 91 ~~g 93 (265)
T PRK04885 91 AKD 93 (265)
T ss_pred HcC
Confidence 764
No 302
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=40.56 E-value=1.6e+02 Score=32.77 Aligned_cols=104 Identities=10% Similarity=0.077 Sum_probs=61.7
Q ss_pred HHhhhhcccceeecc---CCcch-HHHHHHcCCceecccccccccchhhhhhhhhc-ceeeeecCCCCCCCccCHHHHHH
Q 012096 343 LEVLCHSSIGGFWTH---CGLNS-TLEAAYAGVPMLTFPIMMDQVPNSKLIVEDWK-IGWKVKKPEIGSESLVTRDEITE 417 (471)
Q Consensus 343 ~~lL~~~~~~~~Ith---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~lG-~G~~l~~~~~~~~~~~~~~~l~~ 417 (471)
..++..+++ ++-- -|+|- ..|+++++..--++++..+=-.-|. .|| -|+.++. .+.+++++
T Consensus 454 ~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~----~L~~~AllVNP--------~D~~~vA~ 519 (934)
T PLN03064 454 CALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQ----SLGAGAILVNP--------WNITEVAA 519 (934)
T ss_pred HHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHH----HhCCceEEECC--------CCHHHHHH
Confidence 346777887 5543 58874 5599999552111111122112222 223 4667776 59999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 012096 418 LVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLA 468 (471)
Q Consensus 418 ~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 468 (471)
+|.+.|+-+. +.-+++.+++.+... ..+...-++.|++.|...
T Consensus 520 AI~~AL~M~~---~Er~~r~~~~~~~V~-----~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 520 SIAQALNMPE---EEREKRHRHNFMHVT-----THTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHhCCH---HHHHHHHHHHHhhcc-----cCCHHHHHHHHHHHHHHH
Confidence 9999987432 344445555555554 346667778888877654
No 303
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=40.51 E-value=50 Score=31.53 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
+|||+|+..++.| ..+|..|.+ .||+|+++.... .+.+...
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~--~g~~V~~~~r~~-~~~~~~~ 45 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLAR--AGFDVHFLLRSD-YEAVREN 45 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHH--CCCeEEEEEeCC-HHHHHhC
Confidence 4689999888766 457888999 999999998765 3444444
No 304
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=40.42 E-value=2.6e+02 Score=24.58 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=55.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch-----h-hhcCCCCCCCCeEEEecCCCCCCchhhhhcHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL-----S-FIGSGHGNHNNIRFETIPNVIPSELVRARDFL 87 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~-----~-~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 87 (471)
-|.++++.+.|-..-.+.+|-+-.- +|.+|.++-.-... . .+... +..+.+...++++.-+.. +..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~G--hG~rv~vvQFiKg~~~~GE~~~~~~~---~~~v~~~~~~~g~tw~~~---~~~ 101 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALG--HGLRVGVVQFIKGGWKYGEEAALEKF---GLGVEFHGMGEGFTWETQ---DRE 101 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhc--CCCEEEEEEEeecCcchhHHHHHHhh---ccceeEEecCCceeCCCc---CcH
Confidence 3778888888988776666655555 77787776532111 1 11211 126888888876642221 111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchh
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLA 125 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~ 125 (471)
.-. ..+...++...+.+.. .++|+||.|.+..
T Consensus 102 ~d~----~aa~~~w~~a~~~l~~--~~ydlviLDEl~~ 133 (198)
T COG2109 102 ADI----AAAKAGWEHAKEALAD--GKYDLVILDELNY 133 (198)
T ss_pred HHH----HHHHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 111 2333334444444443 2799999998763
No 305
>PRK09620 hypothetical protein; Provisional
Probab=40.39 E-value=50 Score=29.98 Aligned_cols=38 Identities=5% Similarity=-0.049 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCccChHH------------HHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINP------------MMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p------------~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
.++|+|..+|+.=.+.| -..||++|.+ +|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~--~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELIS--KGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 35788887776555443 4689999999 99999999754
No 306
>PRK07773 replicative DNA helicase; Validated
Probab=40.17 E-value=83 Score=35.06 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=33.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
|++...|+.|=..-.+.+|...+.. .|..|.|++-+...+.+
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQL 261 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHH
Confidence 6777888999999999999888751 48899999987655443
No 307
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.05 E-value=37 Score=29.29 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=30.3
Q ss_pred eeccCCcchHHHHHHcCCceeccccc-----------------------ccccchhhhhhhhhcceeeeecCCCCCCCcc
Q 012096 354 FWTHCGLNSTLEAAYAGVPMLTFPIM-----------------------MDQVPNSKLIVEDWKIGWKVKKPEIGSESLV 410 (471)
Q Consensus 354 ~IthgG~~s~~eal~~GvP~v~~P~~-----------------------~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~ 410 (471)
+|++||...+..... ++|+|-+|.. .....+...+++-||+-+..-. - -
T Consensus 38 iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~-~------~ 109 (176)
T PF06506_consen 38 IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP-Y------D 109 (176)
T ss_dssp EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE-E------S
T ss_pred EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE-E------C
Confidence 666666555555554 6666666543 1233345555555555444332 1 2
Q ss_pred CHHHHHHHHHHHhc
Q 012096 411 TRDEITELVKRFMD 424 (471)
Q Consensus 411 ~~~~l~~~i~~~l~ 424 (471)
+.+++...|.++..
T Consensus 110 ~~~e~~~~i~~~~~ 123 (176)
T PF06506_consen 110 SEEEIEAAIKQAKA 123 (176)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 56667777766644
No 308
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=40.01 E-value=3.1e+02 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=24.4
Q ss_pred CceEEEE-cCch-hhHHHHHhhcCCCeEEEecch
Q 012096 114 VVSAIIV-DTFL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 114 ~~D~vI~-D~~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
.||+||+ |... ..+..=|.++|||+|.++-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 6999874 5544 667777999999999985544
No 309
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=39.95 E-value=1.9e+02 Score=29.35 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHH
Q 012096 21 PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAP 100 (471)
Q Consensus 21 ~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (471)
.+.|=..-...|++.|++ +|++|..+=+.. +.+.. .+ ...-.+.+... .+. ++ .-...
T Consensus 9 t~vGKT~vt~~L~~~L~~--~G~~V~~fK~g~--d~~D~------~~--~~~~~g~~~~~---ld~--~~-----~~~~~ 66 (449)
T TIGR00379 9 SGVGKTTISTGIMKALSR--RKLRVQPFKVGP--DYIDP------MF--HTQATGRPSRN---LDS--FF-----MSEAQ 66 (449)
T ss_pred CCCcHHHHHHHHHHHHHH--CCCceeEEccCC--CCCCH------HH--HHHHhCCchhh---CCc--cc-----CCHHH
Confidence 346788999999999999 999999985421 00000 00 00000000000 000 00 11233
Q ss_pred HHHHHHHhhhcCCCceEEEEcCch------------hhHHHHHhhcCCCeEEEecchH
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFL------------AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~------------~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
+.+.+.++.. +.|++|++... .....+|+.+++|+|.+.....
T Consensus 67 i~~~~~~~~~---~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 67 IQECFHRHSK---GTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred HHHHHHHhcc---cCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 4555555542 58999977651 1366899999999999987653
No 310
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.86 E-value=1.8e+02 Score=22.73 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHH
Q 012096 25 HINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKV 104 (471)
Q Consensus 25 H~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (471)
+-.-++.+|+.|.+ .|+++ ++++...+.+... |+....+-..-. . ..+.+.++
T Consensus 10 ~K~~~~~~a~~l~~--~G~~i--~AT~gTa~~L~~~-----Gi~~~~v~~~~~-~-----------------g~~~i~~~ 62 (112)
T cd00532 10 VKAMLVDLAPKLSS--DGFPL--FATGGTSRVLADA-----GIPVRAVSKRHE-D-----------------GEPTVDAA 62 (112)
T ss_pred cHHHHHHHHHHHHH--CCCEE--EECcHHHHHHHHc-----CCceEEEEecCC-C-----------------CCcHHHHH
Confidence 44568899999999 99988 3566666667665 555444321110 0 11223333
Q ss_pred HHHhhhcCCCceEEEEcC--c--------hhhHHHHHhhcCCCeEE
Q 012096 105 LDFLQVEAPVVSAIIVDT--F--------LAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 105 l~~l~~~~~~~D~vI~D~--~--------~~~~~~~A~~lgIP~v~ 140 (471)
+++- . ++|+||.-. . ......+|-.++||++.
T Consensus 63 i~~~--g--~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 63 IAEK--G--KFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred HhCC--C--CEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3331 1 699998632 1 12334568889999988
No 311
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=39.77 E-value=31 Score=29.98 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=31.6
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
|++...++.| ..-...+.+.|++ +|++|.++.++....++..
T Consensus 2 illgvtGsia-a~ka~~lir~L~~--~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 2 IVVAMTGASG-VIYGIRLLEVLKE--AGVEVHLVISDWAKETIKY 43 (181)
T ss_pred EEEEEECHHH-HHHHHHHHHHHHH--CCCEEEEEECccHHHHHHH
Confidence 4444444444 3445889999999 9999999999988888754
No 312
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.68 E-value=2.1e+02 Score=28.84 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHH-hcCCCcEEEEEECccchh
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLV-SRNPNVFITFVVTEEWLS 55 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~-~~~rGh~Vt~~~~~~~~~ 55 (471)
..|+++..++.|=..-...||..|. + +|..|.+++...++.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccccch
Confidence 3466777779999999999999987 6 799999999875543
No 313
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=1.4e+02 Score=29.26 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
-|.|+.--+.|-..-+-.+|..+++ +|+.+.++|..-|+
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kk--kG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKK--KGYKVALVCADTFR 141 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHh--cCCceeEEeecccc
Confidence 4667777799999999999999999 99999999987554
No 314
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=39.51 E-value=1.6e+02 Score=23.08 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHH
Q 012096 25 HINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKV 104 (471)
Q Consensus 25 H~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (471)
+-.-++.+++.|.+ .|++| ++++...+.+... ++....+......... + .+.+.++
T Consensus 11 dk~~~~~~a~~l~~--~G~~i--~aT~gTa~~L~~~-----gi~~~~v~~~~~~~~~---~------------~~~i~~~ 66 (116)
T cd01423 11 SKPELLPTAQKLSK--LGYKL--YATEGTADFLLEN-----GIPVTPVAWPSEEPQN---D------------KPSLREL 66 (116)
T ss_pred cchhHHHHHHHHHH--CCCEE--EEccHHHHHHHHc-----CCCceEeeeccCCCCC---C------------chhHHHH
Confidence 45568899999999 99888 4566667777666 4443333211000000 0 1224444
Q ss_pred HHHhhhcCCCceEEEEcCc---------hhhHHHHHhhcCCCeEE
Q 012096 105 LDFLQVEAPVVSAIIVDTF---------LAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 105 l~~l~~~~~~~D~vI~D~~---------~~~~~~~A~~lgIP~v~ 140 (471)
+++ .++|+||.-.. .......|-.++||++.
T Consensus 67 i~~-----~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 67 LAE-----GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHc-----CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 544 36999998432 12344678889999974
No 315
>PLN02929 NADH kinase
Probab=39.50 E-value=1.6e+02 Score=27.95 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHH---cCCcee
Q 012096 298 SVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAY---AGVPML 374 (471)
Q Consensus 298 ~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~---~GvP~v 374 (471)
.+.++.+.+.|++.+..+.-....+ + ......+++ +|+-||=||+..|.. .++|++
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r~~---~----------------~~~~~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvl 91 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLRNE---L----------------SQPIRDVDL--VVAVGGDGTLLQASHFLDDSIPVL 91 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeeccc---c----------------ccccCCCCE--EEEECCcHHHHHHHHHcCCCCcEE
Confidence 4556667777887777663222111 0 011234466 999999999999855 468887
Q ss_pred cccccc------cccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 375 TFPIMM------DQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 375 ~~P~~~------DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
++=..- .+..|.-... . -+|..-.. +.+++.+++.+++++
T Consensus 92 GIN~Gp~~~~~~~~~~~~~~~~-r-~lGfL~~~---------~~~~~~~~L~~il~g 137 (301)
T PLN02929 92 GVNSDPTQKDEVEEYSDEFDAR-R-STGHLCAA---------TAEDFEQVLDDVLFG 137 (301)
T ss_pred EEECCCcccccccccccccccc-c-CccccccC---------CHHHHHHHHHHHHcC
Confidence 764421 1222221111 1 35655544 788999999999975
No 316
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.27 E-value=2.4e+02 Score=26.77 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=38.8
Q ss_pred hhcccceeeccCCcchHHHHHH----cCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHH
Q 012096 347 CHSSIGGFWTHCGLNSTLEAAY----AGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 347 ~~~~~~~~IthgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 422 (471)
..+++ +|+=||=||+..|+. .++|++.+-. - -+|..-+. +.+++.+++.++
T Consensus 67 ~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFL~~~---------~~~~~~~~l~~i 121 (296)
T PRK04539 67 QYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G------HLGFLTQI---------PREYMTDKLLPV 121 (296)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec--------C------CCeEeecc---------CHHHHHHHHHHH
Confidence 34666 999999999999975 3678877632 1 14444433 778898999998
Q ss_pred hcC
Q 012096 423 MDL 425 (471)
Q Consensus 423 l~~ 425 (471)
+++
T Consensus 122 ~~g 124 (296)
T PRK04539 122 LEG 124 (296)
T ss_pred HcC
Confidence 875
No 317
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.20 E-value=2.3e+02 Score=24.26 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEECccch-hhh-cCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHH
Q 012096 29 MMNLCKLLVSRNPNVFITFVVTEEWL-SFI-GSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLD 106 (471)
Q Consensus 29 ~l~La~~L~~~~rGh~Vt~~~~~~~~-~~~-~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 106 (471)
+..|.+...+ +|..|.+++..+-. +.+ .......+++++....++.. .....+++++
T Consensus 37 ~~~l~~~~~~--~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~~ 95 (172)
T PF03808_consen 37 FPDLLRRAEQ--RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-------------------DEEEEEAIIN 95 (172)
T ss_pred HHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------ChhhHHHHHH
Confidence 4456666667 78899999876422 211 11111133677766554432 1122344555
Q ss_pred HhhhcCCCceEEEEcCch----hhHHHHHhhcCCCeEEEecchHH
Q 012096 107 FLQVEAPVVSAIIVDTFL----AWAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 107 ~l~~~~~~~D~vI~D~~~----~~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
.+++. +||+|++...+ .|.....+.++.+ +.++.....
T Consensus 96 ~I~~~--~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 96 RINAS--GPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HHHHc--CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 55553 79999998776 3566667777787 555555544
No 318
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=38.90 E-value=45 Score=31.53 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=30.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
|||+|+..++.| ..+|..|.+ .||+|+++..+...+.+...
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~ 41 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLE--AGRDVTFLVRPKRAKALRER 41 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHH--CCCceEEEecHHHHHHHHhC
Confidence 579999877765 567888999 99999999874444444443
No 319
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=38.35 E-value=41 Score=29.02 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=28.9
Q ss_pred ccChHH-HHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 23 RGHINP-MMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 23 ~GH~~p-~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
.||... .+.+.+.|+++ +||+|.++.++...+.+..
T Consensus 9 sg~~l~e~v~~l~~L~~~-~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNR-YGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred cHHHHHHHHHHHHHHHHh-cCCEEEEEECHhHHHHHHH
Confidence 378866 88999999953 6999999999988766553
No 320
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=37.95 E-value=1.7e+02 Score=30.06 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=26.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||||++..+++.| +|+.+|++..+|++|.++-.+
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~ 34 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSY 34 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECC
Confidence 6899999999887 578888884349998888553
No 321
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.76 E-value=49 Score=32.85 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
+++||++...++. ...-...+.+.|++ .|++|.++.++....++...
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~--~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRK--AGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHh--CCCEEEEEECHhHHHHHhHH
Confidence 3567877776664 56678999999999 99999999999888777643
No 322
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.69 E-value=89 Score=31.39 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=20.8
Q ss_pred CceEEEEcCchhhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFLAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~~~~~~~A~~lgIP~v~~ 141 (471)
+||+||.+... ..+|+++|+|++.+
T Consensus 371 ~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECchh---HHHHHhcCCCEEEe
Confidence 69999999754 46899999999875
No 323
>PLN02327 CTP synthase
Probab=37.56 E-value=1e+02 Score=31.83 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=33.2
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 13 CHIVALPYP---GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 13 ~~il~~~~~---~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
||++|++++ +.|-=.-.-+|+..|+. ||++|++.=-.++...
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~--~g~~V~~~K~DPYlNv 45 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA--CGLRVTSIKIDPYLNT 45 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHH--CCCceeeeeccccccc
Confidence 378888887 44566778899999999 9999999887665543
No 324
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=37.30 E-value=1.3e+02 Score=27.53 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=30.5
Q ss_pred EEEEEcCC---CccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 14 HIVALPYP---GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 14 ~il~~~~~---~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
|++|++++ +.|-=.-.-+++..|+. ||++|+..=-..+...
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~--~g~~v~~~K~DpYlNv 44 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKA--RGLKVTAQKLDPYLNV 44 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHH--CCCeEEEEeecccccC
Confidence 35666665 44566677889999999 9999999887665543
No 325
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.18 E-value=1e+02 Score=31.49 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC
Q 012096 26 INPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP 73 (471)
Q Consensus 26 ~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip 73 (471)
-.-++.+++.|.+ .|+++ +++....+.+... |+....+.
T Consensus 10 K~~iv~lAk~L~~--lGfeI--iATgGTak~L~e~-----GI~v~~Vs 48 (511)
T TIGR00355 10 KTGIVEFAQGLVE--RGVEL--LSTGGTAKLLAEA-----GVPVTEVS 48 (511)
T ss_pred cccHHHHHHHHHH--CCCEE--EEechHHHHHHHC-----CCeEEEee
Confidence 3447899999999 99998 3677777788777 55555444
No 326
>PRK07952 DNA replication protein DnaC; Validated
Probab=37.16 E-value=1.9e+02 Score=26.55 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=27.2
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
-+++...+|.|=..=..++|..|.+ +|+.|.+++..+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~~~ 137 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITVAD 137 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEHHH
Confidence 4666666777877677788888888 888888875433
No 327
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.14 E-value=1.5e+02 Score=25.79 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcE
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVF 44 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~ 44 (471)
.+++++ .++.||..=+++|.+.|.++..+-.
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~y~~r~ 69 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDLYSPRS 69 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhhcCceE
Confidence 455554 4566999999999999988444433
No 328
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=36.60 E-value=2.2e+02 Score=28.71 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHH
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVE 91 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~ 91 (471)
.++++++..+ .....+++.|.+ -|-+|..+............ +.. .....|+.
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~e--lGm~v~~~~~~~~~~~~~~~------------~~~----~~~~~D~~---- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTS--MGAQIVAAVTTTGSPLLQKL------------PVE----TVVIGDLE---- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHH--CCCEEEEEEeCCCCHHHHhC------------CcC----cEEeCCHH----
Confidence 4677777533 467889999999 99999887765432222111 100 00001221
Q ss_pred HHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEE
Q 012096 92 SVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 92 ~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~ 141 (471)
.+++++++. ++|++|.... ...+|+++|||++.+
T Consensus 364 --------~l~~~i~~~-----~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 364 --------DLEDLACAA-----GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred --------HHHHHHhhc-----CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 124444443 6999998864 356899999999875
No 329
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=36.34 E-value=2e+02 Score=22.25 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=53.0
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHH
Q 012096 24 GHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEK 103 (471)
Q Consensus 24 GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (471)
++-.-++.+++.|.+ .|+++ ++++...+.+... ++....+.... . ....+.+
T Consensus 10 ~~k~~~~~~~~~l~~--~G~~l--~aT~gT~~~l~~~-----gi~~~~v~~~~--~-----------------~~~~i~~ 61 (110)
T cd01424 10 RDKPEAVEIAKRLAE--LGFKL--VATEGTAKYLQEA-----GIPVEVVNKVS--E-----------------GRPNIVD 61 (110)
T ss_pred CcHhHHHHHHHHHHH--CCCEE--EEchHHHHHHHHc-----CCeEEEEeecC--C-----------------CchhHHH
Confidence 456678899999999 99988 3566666677766 55544332110 0 1122333
Q ss_pred HHHHhhhcCCCceEEEEcCc-------hhhHHHHHhhcCCCeEE
Q 012096 104 VLDFLQVEAPVVSAIIVDTF-------LAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 104 ll~~l~~~~~~~D~vI~D~~-------~~~~~~~A~~lgIP~v~ 140 (471)
++++ .++|+||...- .......|-.+|||++.
T Consensus 62 ~i~~-----~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 62 LIKN-----GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred HHHc-----CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 4433 36999997431 23455678899999996
No 330
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=36.02 E-value=66 Score=30.40 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHc----CCcee
Q 012096 299 VQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYA----GVPML 374 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~----GvP~v 374 (471)
..+..+.+.+++.++.+++..... ... . ..+. ...+..++-..+++ +|+-||=||+.+++.. ++|++
T Consensus 21 e~~~~i~~~L~~~g~~v~v~~~~~-~~~-~--~~~~---~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pil 91 (291)
T PRK02155 21 EPLESLAAFLAKRGFEVVFEADTA-RNI-G--LTGY---PALTPEEIGARADL--AVVLGGDGTMLGIGRQLAPYGVPLI 91 (291)
T ss_pred HHHHHHHHHHHHCCCEEEEecchh-hhc-C--cccc---cccChhHhccCCCE--EEEECCcHHHHHHHHHhcCCCCCEE
Confidence 345667777777888876632110 000 0 0000 00122233334566 9999999999999774 56766
Q ss_pred cccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 375 TFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 375 ~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+- .- .+|...+ .+.+++.++|.+++++
T Consensus 92 GIn--------~G------~lGFL~~---------~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 92 GIN--------HG------RLGFITD---------IPLDDMQETLPPMLAG 119 (291)
T ss_pred EEc--------CC------Ccccccc---------CCHHHHHHHHHHHHcC
Confidence 653 11 2343333 3778888888888865
No 331
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.92 E-value=47 Score=28.65 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecchHHH
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSMSASL 148 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 148 (471)
...++..++++..+ ++|+||.+.. ...+|+++|+|.+.+.++..+.
T Consensus 111 ~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi 156 (176)
T PF06506_consen 111 EEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGEESI 156 (176)
T ss_dssp HHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--HHHH
T ss_pred HHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecHHHH
Confidence 34567777777664 7999999963 4678999999999987755553
No 332
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.86 E-value=3.8e+02 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
-.|++--.-+||+.|++. .||+|.+.+.+
T Consensus 13 NyGDIGV~wRLARql~re-~G~~VrLWvDd 41 (370)
T COG4394 13 NYGDIGVAWRLARQLKRE-HGWQVRLWVDD 41 (370)
T ss_pred ccchhHHHHHHHHHHHHH-hCceeeeecCC
Confidence 468999999999999974 79999999976
No 333
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=35.82 E-value=40 Score=31.78 Aligned_cols=41 Identities=17% Similarity=0.100 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC-ccchhhhcCC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT-EEWLSFIGSG 60 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~-~~~~~~~~~~ 60 (471)
|||+|+..+..| ..+|..|.+ .||+|+++.. ++..+.+.+.
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~--~g~~V~~~~r~~~~~~~~~~~ 42 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQ--AGHDVTLVARRGAHLDALNEN 42 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHh--CCCeEEEEECChHHHHHHHHc
Confidence 578888877665 567888999 9999999997 3333444433
No 334
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.81 E-value=89 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
+++||+++|..|.|--.-.-.+=+.+.+ +|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~--~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEE--YGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHH--CCCcEEEEEe
Confidence 4578999999887633333444455566 7777665444
No 335
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=35.77 E-value=77 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=22.7
Q ss_pred CceEEEEcCc--hhhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTF--LAWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~--~~~~~~~A~~lgIP~v~~ 141 (471)
++|.|++=.. ...+..+|.++|+|+|..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 5999985443 267888999999999995
No 336
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=35.75 E-value=63 Score=30.52 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=33.1
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|||+|+.=||-|=..-.+.||..|++ +|++|.++=-.
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~--~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALAR--RGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEecc
Confidence 57899998999999999999999999 99999887543
No 337
>PRK13768 GTPase; Provisional
Probab=35.71 E-value=97 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=30.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.+++...++.|=..-...++..|.. .|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEECCC
Confidence 4566666788888889999999999 999999987654
No 338
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=35.21 E-value=1.7e+02 Score=29.54 Aligned_cols=32 Identities=9% Similarity=0.217 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
+||||++..+++.| +|++.|++ .|++|.++..
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~--~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKR--SGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHh--CCCeEEEEEC
Confidence 46999999998777 57899999 8887777644
No 339
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.18 E-value=43 Score=29.88 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=29.5
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+++-.--+.|--.-...++.-+.+ .||.|++++++.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~--~g~~v~yvsTe~ 66 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLM--NGYRVTYVSTEL 66 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHh--CCceEEEEEech
Confidence 344444577888889999999999 999999999873
No 340
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.05 E-value=44 Score=33.10 Aligned_cols=46 Identities=20% Similarity=0.095 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
++||++...++ +...-.+.+.+.|++ .|++|.++.++....++...
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~--~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVR--QGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHh--CCCEEEEEECHhHHHHHHHH
Confidence 45777776665 445668999999999 99999999999888777543
No 341
>PF06032 DUF917: Protein of unknown function (DUF917); InterPro: IPR010318 This family consists of hypothetical bacterial and archaeal proteins of unknown function.; PDB: 2O3I_B.
Probab=34.92 E-value=47 Score=32.36 Aligned_cols=103 Identities=13% Similarity=0.003 Sum_probs=50.3
Q ss_pred EcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhc
Q 012096 18 LPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKM 97 (471)
Q Consensus 18 ~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 97 (471)
+..++-|...-...+++...+ .|+.|.++...+..+--.-. .+....-|.... ++...- ...
T Consensus 16 LG~GGGG~p~~~~~~~~~~l~--~~~~v~lv~~del~dd~~v~-----~v~~~GsP~v~~---E~lp~g--------~e~ 77 (353)
T PF06032_consen 16 LGSGGGGDPYIGRLMAEQALR--EGGPVRLVDPDELPDDDLVV-----PVGMMGSPTVSV---EKLPSG--------DEA 77 (353)
T ss_dssp TTTT-SS-HHHHHHHHTT-SB--TTS-EEEE-GGG--SSE-EE-----EEEEEE-HHHTT----SS-HH--------HHH
T ss_pred EEEcCCccHHHHHHHHHHHHh--CCCCeEEEEHhHcCCCCcEe-----EEEEeCCChHHh---ccCCCc--------hHH
Confidence 455677888888888888888 89999999987642211000 122222221111 000000 112
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCch----hhHHHHHhhcCCCeEEE
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFL----AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~----~~~~~~A~~lgIP~v~~ 141 (471)
...++.+.+.+. +++|.|++-... ..++.+|..+|+|+|=-
T Consensus 78 ~~a~~~le~~~g---~~~~av~~~EiGG~N~~~pl~~Aa~~GlPvvDa 122 (353)
T PF06032_consen 78 LRAVEALEKYLG---RKIDAVIPIEIGGSNGLNPLLAAAQLGLPVVDA 122 (353)
T ss_dssp HHHHHHHHHHTT-----EEEEE-SSSSCCHHHHHHHHHHHHT-EEESB
T ss_pred HHHHHHHHHhhC---CCccEEeehhcCccchhHHHHHHHHhCCCEEcC
Confidence 222344444444 479999975433 56667899999998863
No 342
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=34.79 E-value=3.1e+02 Score=23.86 Aligned_cols=118 Identities=13% Similarity=0.070 Sum_probs=62.2
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccch-------hhhcCCCCCCCC---eEEEecCCCCCCchhhh
Q 012096 15 IVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL-------SFIGSGHGNHNN---IRFETIPNVIPSELVRA 83 (471)
Q Consensus 15 il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~-------~~~~~~~~~~~~---~~~~~ip~~~~~~~~~~ 83 (471)
|.+.+. ...|=..-.+.|++.|.+ +|.+|.|+=|-... +.+.+....... +..+.+....
T Consensus 3 i~I~~t~t~vGKT~vslgL~~~l~~--~g~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (199)
T PF13500_consen 3 IFITGTDTGVGKTVVSLGLARALRR--RGIKVGYFKPIQTGPEDDEDAELIRELFGLSEPPDDPSPYTFDEPA------- 73 (199)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHH--TTSEEEEEEEEEESCCCSSHHHHHHHHCCTCCCHHHHECEEESSSS-------
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh--CCCceEEEeeeEecCCCCchHHHHHHHhCCCcccccccccccCccc-------
Confidence 444444 466888999999999999 99999988653211 111110000000 0111111111
Q ss_pred hcHHHHHHHHHHhchHHHHHH-HHHhhhcCCCceEEEEcCch-h--------hHHHHHhhcCCCeEEEecchHH
Q 012096 84 RDFLAFVESVSTKMEAPFEKV-LDFLQVEAPVVSAIIVDTFL-A--------WAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~l-l~~l~~~~~~~D~vI~D~~~-~--------~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
...+..-.......++++ ++++++ +.|+||++... . ....+|+.++.|+|.+......
T Consensus 74 ---~~~~~~~~~~~~~~~~~i~~~~l~~---~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a~vIlV~~~~~g 141 (199)
T PF13500_consen 74 ---SPHLAAELEGVDIDLERIIYKELAE---EYDVVLVEGAGGLMVPIFSGDLNADIAKALGAPVILVASGRLG 141 (199)
T ss_dssp ----HHHHHHHHT----HHHHHHHHCHT---TTCEEEEEESSSTTSECCTTEEHHHHHHHHT-EEEEEEESSTT
T ss_pred ---CHHHHhhccCCcccHHHHHHHHHhh---cCCEEEEeCCcccCcccccChHHHHHHHHcCCCEEEEeCCCCC
Confidence 011111111111113443 455553 68999988654 2 2568999999999998665543
No 343
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.73 E-value=63 Score=28.76 Aligned_cols=35 Identities=14% Similarity=-0.001 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
||+++|+..+-.| -.||..|.+ .||+|++.+....
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~--ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAK--AGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHh--CCCeEEEecCCCh
Confidence 5677776555433 578999999 9999999976543
No 344
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.65 E-value=3.5e+02 Score=25.45 Aligned_cols=106 Identities=9% Similarity=0.042 Sum_probs=56.3
Q ss_pred cCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc--cchhhhcCCCCCCCCeEEEecCCCCCCchhhhhc
Q 012096 8 ATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE--EWLSFIGSGHGNHNNIRFETIPNVIPSELVRARD 85 (471)
Q Consensus 8 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~ 85 (471)
...++|||+|+.++..+. +.+|.++.+....+++|.++.+. .......+. ++.+..++.... .
T Consensus 85 ~~~~~~ri~vl~Sg~g~n---l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~-----gIp~~~~~~~~~-~------ 149 (286)
T PRK13011 85 DPAARPKVLIMVSKFDHC---LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH-----GIPFHHFPITPD-T------ 149 (286)
T ss_pred ecccCceEEEEEcCCccc---HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh-----CCCEEEeCCCcC-c------
Confidence 345568999999986333 34455555552246888887653 333344444 777766652211 0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEE
Q 012096 86 FLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~ 141 (471)
....+..+.+++++. ++|++|+-.+. .....+-+.+.-..+-+
T Consensus 150 --------~~~~~~~~~~~l~~~-----~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 150 --------KPQQEAQVLDVVEES-----GAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred --------hhhhHHHHHHHHHHh-----CcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 011112234445554 59999988765 33344444443334443
No 345
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=34.60 E-value=1.7e+02 Score=29.21 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCC-CcEEEEE
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNP-NVFITFV 48 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~r-Gh~Vt~~ 48 (471)
|||+++..++..| +|++.|++ . |+.+.++
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~--~~~~~~i~~ 30 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQ--SPLVEKVYV 30 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHh--CCCCCEEEE
Confidence 6899999998777 59999988 5 4444333
No 346
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=34.43 E-value=2.4e+02 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|||+++..+..+ ..|++++++ -|+.+++++.+.+.
T Consensus 1 ~kiliiG~G~~~-----~~l~~~~~~--~~~~~~~~~~~~~~ 35 (423)
T TIGR00877 1 MKVLVIGNGGRE-----HALAWKLAQ--SPLVKYVYVAPGNA 35 (423)
T ss_pred CEEEEECCChHH-----HHHHHHHHh--CCCccEEEEECCCH
Confidence 589999888764 568899998 78888887665543
No 347
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=34.24 E-value=3.1e+02 Score=26.19 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=56.5
Q ss_pred EEEEEcCCCcc---Ch--HHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHH
Q 012096 14 HIVALPYPGRG---HI--NPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLA 88 (471)
Q Consensus 14 ~il~~~~~~~G---H~--~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 88 (471)
-|+|.|+.+.| ++ .-+..|++.|.+ +|.+|.++++++..+..+.... . .+...
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~--~~~~ivl~G~~~e~~~~~~i~~---~-----~~~~~------------ 233 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLID--QGYQVVLFGSAKDHPAGNEIEA---L-----LPGEL------------ 233 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHH--CCCEEEEEEChhhHHHHHHHHH---h-----CCccc------------
Confidence 46666655332 23 358899999998 8999998887655443322100 0 00000
Q ss_pred HHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEec
Q 012096 89 FVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~ 143 (471)
. .. .-...+.++..-++ +-|++|+. ..+.+-+|..+|+|+|.++.
T Consensus 234 -~-~l--~g~~sL~el~ali~----~a~l~I~~--DSGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 234 -R-NL--AGETSLDEAVDLIA----LAKAVVTN--DSGLMHVAAALNRPLVALYG 278 (334)
T ss_pred -c-cC--CCCCCHHHHHHHHH----hCCEEEee--CCHHHHHHHHcCCCEEEEEC
Confidence 0 00 00112444444444 48999976 34467799999999999744
No 348
>PRK10037 cell division protein; Provisional
Probab=34.17 E-value=64 Score=29.56 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=30.2
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
|+.|.|+.. ||-|=..-...||..|++ +|++|.++=
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~--~G~rVLlID 37 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQM--LGENVLVID 37 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHh--cCCcEEEEe
Confidence 445666666 688999999999999999 999999983
No 349
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=34.16 E-value=3.2e+02 Score=23.95 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=58.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch------hhhcCCCCCCCCeEEEecCCCCCCchhhhhcH
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL------SFIGSGHGNHNNIRFETIPNVIPSELVRARDF 86 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~ 86 (471)
-.|.+++..+.|=....+.+|-+... .|++|.++-.-... ..+... +++.+.....++.-... +.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g--~G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~~~~~---~~ 93 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVG--HGKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFTWETQ---DR 93 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCcccCC---Cc
Confidence 46899999999999999999988888 99999998642211 112221 26777777654321111 11
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch
Q 012096 87 LAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL 124 (471)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~ 124 (471)
.+-. ..+...++...+.+.. .++|+||.|...
T Consensus 94 ~e~~----~~~~~~~~~a~~~l~~--~~ydlvVLDEi~ 125 (191)
T PRK05986 94 ERDI----AAAREGWEEAKRMLAD--ESYDLVVLDELT 125 (191)
T ss_pred HHHH----HHHHHHHHHHHHHHhC--CCCCEEEEehhh
Confidence 1111 1222223333333333 379999999866
No 350
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.16 E-value=1e+02 Score=23.84 Aligned_cols=38 Identities=16% Similarity=0.011 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+||+++|..+.|--.-.-..=++..+ +|-++++...+
T Consensus 1 Mk~IlLvC~aGmSTSlLV~Km~~aA~~--kg~~~~I~A~s 38 (102)
T COG1440 1 MKKILLVCAAGMSTSLLVTKMKKAAES--KGKDVTIEAYS 38 (102)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHh--CCCceEEEEec
Confidence 678999999988766555555666666 77777776543
No 351
>PLN02470 acetolactate synthase
Probab=34.05 E-value=59 Score=34.23 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred EeCCCcCCCH--HHHHHHHHHHHhCCCcEEEEEcCCC-Ccccccc--CCCceEeeccc-hHHh-----h--hhcccceee
Q 012096 289 SLGSLWSVSS--VQMDEIVAGVRNSGVRFFWVSRGDT-SWFKDGC--VDRGIVVPWCD-QLEV-----L--CHSSIGGFW 355 (471)
Q Consensus 289 s~GS~~~~~~--~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~~~--~~nv~v~~~~p-q~~l-----L--~~~~~~~~I 355 (471)
+|||....+. ..-+.+++.|++.+++.|+-+.++. ..+...+ .++++++.-.. +... + ..-..++++
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~ 81 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCI 81 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEE
Confidence 3566654332 3356688999999999999887763 1111111 12344432221 1111 1 112355588
Q ss_pred ccCCcc------hHHHHHHcCCceeccc
Q 012096 356 THCGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 356 thgG~~------s~~eal~~GvP~v~~P 377 (471)
+|.|-| .+.+|...++|||++.
T Consensus 82 ~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 82 ATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred ECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 998854 7899999999999985
No 352
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.96 E-value=68 Score=30.25 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=37.4
Q ss_pred hhhcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHH
Q 012096 346 LCHSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKR 421 (471)
Q Consensus 346 L~~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~ 421 (471)
...+++ +|+-||=||+..++.. ++|++.+-. - .+|..-+ ++.+++.+++.+
T Consensus 62 ~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFLt~---------~~~~~~~~~l~~ 116 (287)
T PRK14077 62 FKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA--------G------HLGFLTD---------ITVDEAEKFFQA 116 (287)
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC--------C------CcccCCc---------CCHHHHHHHHHH
Confidence 334666 9999999999988663 677766521 1 1333332 377888888888
Q ss_pred HhcC
Q 012096 422 FMDL 425 (471)
Q Consensus 422 ~l~~ 425 (471)
++++
T Consensus 117 i~~g 120 (287)
T PRK14077 117 FFQG 120 (287)
T ss_pred HHcC
Confidence 8865
No 353
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=33.88 E-value=64 Score=32.52 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=34.1
Q ss_pred cccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|...+ ++||+++..+..| ++.++.|.+ +|++|++.-...+.
T Consensus 2 ~~~~~-~~kv~V~GLG~sG-----~a~a~~L~~--~G~~v~v~D~~~~~ 42 (448)
T COG0771 2 MEDFQ-GKKVLVLGLGKSG-----LAAARFLLK--LGAEVTVSDDRPAP 42 (448)
T ss_pred ccccc-CCEEEEEeccccc-----HHHHHHHHH--CCCeEEEEcCCCCc
Confidence 34445 8899999999888 999999999 99999998865444
No 354
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=33.87 E-value=60 Score=27.41 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
..+|+++..+..| ...++.|.+ .|++|+++.+.
T Consensus 13 ~~~vlVvGGG~va-----~rka~~Ll~--~ga~V~VIsp~ 45 (157)
T PRK06719 13 NKVVVIIGGGKIA-----YRKASGLKD--TGAFVTVVSPE 45 (157)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHh--CCCEEEEEcCc
Confidence 4578888777543 778999999 99999999654
No 355
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=33.83 E-value=2.7e+02 Score=22.97 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.0
Q ss_pred eeeccCCc------chHHHHHHcCCceecccc
Q 012096 353 GFWTHCGL------NSTLEAAYAGVPMLTFPI 378 (471)
Q Consensus 353 ~~IthgG~------~s~~eal~~GvP~v~~P~ 378 (471)
++++|+|- +.+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 48888664 478899999999999864
No 356
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=33.69 E-value=64 Score=29.88 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=32.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+|.+..=++-|-..-...||..|++ +|++|.++=-.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~--~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAK--RGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHH--CCCcEEEEecC
Confidence 56888877899999999999999999 99999887443
No 357
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=33.69 E-value=61 Score=33.01 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.9
Q ss_pred hhcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHH
Q 012096 347 CHSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 347 ~~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 422 (471)
..+++ +|+=||=||+..|+.. ++|++.+ |.- -+|..-+ +..+++.++|.++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI--------N~G------~LGFLt~---------i~~~e~~~~Le~i 315 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF--------SMG------SLGFMTP---------FHSEQYRDCLDAI 315 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE--------eCC------Ccceecc---------cCHHHHHHHHHHH
Confidence 34566 9999999999999774 4566654 221 2444333 3788899999999
Q ss_pred hcC
Q 012096 423 MDL 425 (471)
Q Consensus 423 l~~ 425 (471)
+++
T Consensus 316 l~G 318 (508)
T PLN02935 316 LKG 318 (508)
T ss_pred HcC
Confidence 875
No 358
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.54 E-value=67 Score=29.78 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
.|.|..=+|-|-..-.+.||..|++ +|++|.++=
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~--~G~kVLliD 37 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAK--LGKKVLQIG 37 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4555544788999999999999999 999999884
No 359
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=33.52 E-value=2e+02 Score=26.53 Aligned_cols=39 Identities=15% Similarity=-0.005 Sum_probs=33.4
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
-+++...|+.|=..-++.++...++ +|..|.|++.+...
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVESPA 76 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecCCc
Confidence 4677788899999999999998888 89999999987533
No 360
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=33.46 E-value=48 Score=31.66 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||||+|+..+..| ..+|..|.+ .||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~--~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLAR--NGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHh--CCCEEEEEECC
Confidence 5789999877655 567888999 99999999864
No 361
>PRK08462 biotin carboxylase; Validated
Probab=33.10 E-value=2.6e+02 Score=28.10 Aligned_cols=37 Identities=3% Similarity=-0.134 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
.|.||+++..+.. .+++++++++ .|++|..+......
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~--~G~~~v~~~~~~d~ 39 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQE--MGKEAIAIYSTADK 39 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHH--cCCCEEEEechhhc
Confidence 4678988876542 6799999999 99998888765443
No 362
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=33.04 E-value=2e+02 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIP 73 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip 73 (471)
|+++++...- -.-++.+|+.|.+ .|+++. ++....+.+... |+....+.
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~--lGfeI~--AT~GTak~L~e~-----GI~v~~V~ 52 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVE--LGVEIL--STGGTAKLLAEA-----GIPVTEVS 52 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHH--CCCEEE--EcchHHHHHHHC-----CCeeEEee
Confidence 3455555543 4558899999999 999984 567777788877 55555443
No 363
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.83 E-value=79 Score=26.20 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.++.+|++.+.+..||-...--+++.|++ .|.+|.......
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d--~GfeVi~~g~~~ 50 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALAD--AGFEVINLGLFQ 50 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHh--CCceEEecCCcC
Confidence 45789999999999999999999999999 999999877543
No 364
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.70 E-value=1.8e+02 Score=27.67 Aligned_cols=28 Identities=7% Similarity=0.291 Sum_probs=24.2
Q ss_pred hcccceeeccCCcchHHHHHHcCCceeccc
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYAGVPMLTFP 377 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~GvP~v~~P 377 (471)
.|++ +|+.++..+..-|-..|+|.+.+-
T Consensus 93 ~pDl--Vi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 93 NPDL--IISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred CCCE--EEECCchHHHHHHHhcCCCEEEEe
Confidence 3455 999999999999999999999664
No 365
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=32.69 E-value=3.2e+02 Score=23.49 Aligned_cols=96 Identities=10% Similarity=0.061 Sum_probs=45.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc-----h-hhhcCCCCCCCCeEEEecCCCCCCchhhhhcHH
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW-----L-SFIGSGHGNHNNIRFETIPNVIPSELVRARDFL 87 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~-----~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 87 (471)
.|-++++.+.|=....+.+|-+-.- +|.+|.++-.-.. + ..+... +++.+.....++.........-
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G--~G~rV~ivQFlKg~~~~GE~~~l~~l----~~~~~~~~g~~f~~~~~~~~~~- 77 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAG--HGMRVLIVQFLKGGRYSGELKALKKL----PNVEIERFGKGFVWRMNEEEED- 77 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHC--TT--EEEEESS--SS--HHHHHHGGG----T--EEEE--TT----GGGHHHH-
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHh--CCCEEEEEEEecCCCCcCHHHHHHhC----CeEEEEEcCCcccccCCCcHHH-
Confidence 4788899999988876666655555 7888888764322 1 111222 1577777766553322211111
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL 124 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~ 124 (471)
...+...++...+.+.. ..+|+||.|...
T Consensus 78 ------~~~~~~~~~~a~~~i~~--~~~dlvILDEi~ 106 (172)
T PF02572_consen 78 ------RAAAREGLEEAKEAISS--GEYDLVILDEIN 106 (172)
T ss_dssp ------HHHHHHHHHHHHHHTT---TT-SEEEEETHH
T ss_pred ------HHHHHHHHHHHHHHHhC--CCCCEEEEcchH
Confidence 22333334444444443 379999999765
No 366
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.63 E-value=2.2e+02 Score=26.99 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHc----CCcee
Q 012096 299 VQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYA----GVPML 374 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~----GvP~v 374 (471)
+....+.+.+++.+..+.+.... .. ..+.+- ....+..++-..+++ +|+=||-||+.+++.. ++|++
T Consensus 20 e~~~~i~~~L~~~giev~v~~~~-~~----~~~~~~--~~~~~~~~~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvl 90 (295)
T PRK01231 20 ETLRRLKDFLLDRGLEVILDEET-AE----VLPGHG--LQTVSRKLLGEVCDL--VIVVGGDGSLLGAARALARHNVPVL 90 (295)
T ss_pred HHHHHHHHHHHHCCCEEEEecch-hh----hcCccc--ccccchhhcccCCCE--EEEEeCcHHHHHHHHHhcCCCCCEE
Confidence 34555666677777776553211 00 011110 011222223334566 9999999999999753 66777
Q ss_pred cccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 375 TFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 375 ~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+... .+|..-+ .+.+++.++|.+++++
T Consensus 91 gin~G--------------~lGFl~~---------~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 91 GINRG--------------RLGFLTD---------IRPDELEFKLAEVLDG 118 (295)
T ss_pred EEeCC--------------ccccccc---------CCHHHHHHHHHHHHcC
Confidence 66431 2333322 3788999999999875
No 367
>PRK12743 oxidoreductase; Provisional
Probab=32.45 E-value=3.1e+02 Score=24.82 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=22.9
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|.+++++++.| --.++++.|.+ +|++|.++..
T Consensus 3 k~vlItGas~g---iG~~~a~~l~~--~G~~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTASDSG---IGKACALLLAQ--QGFDIGITWH 34 (256)
T ss_pred CEEEEECCCch---HHHHHHHHHHH--CCCEEEEEeC
Confidence 45566665433 34789999999 9999987754
No 368
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.21 E-value=52 Score=33.01 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=28.5
Q ss_pred cCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 8 ATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 8 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
..+++.||+|+..+.-| +..|+.|.. .+++||++.+..
T Consensus 6 ~~~~~~~vVIvGgG~aG-----l~~a~~L~~--~~~~ItlI~~~~ 43 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAG-----AYFVRNLDP--KKYNITVISPRN 43 (424)
T ss_pred cCCCCCeEEEECCCHHH-----HHHHHHhCc--CCCeEEEEcCCC
Confidence 44566789988877555 456788877 789999998754
No 369
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.16 E-value=1.9e+02 Score=26.23 Aligned_cols=32 Identities=9% Similarity=-0.110 Sum_probs=24.5
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|.+++++++. ---.++|++|.+ +|++|.++..
T Consensus 9 k~~lItGas~---gIG~aia~~l~~--~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCNT---GLGQGMAIGLAK--AGADIVGVGV 40 (251)
T ss_pred CEEEEeCCCc---hHHHHHHHHHHH--CCCEEEEecC
Confidence 5677777654 356788999999 9999987654
No 370
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.13 E-value=2.5e+02 Score=28.10 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
.+..|+++.--+.|-..-+--||+.|++ +|+.|.+++..-++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~R 140 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYR 140 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCC
Confidence 3456788888899999999999999999 99999999976544
No 371
>PRK11519 tyrosine kinase; Provisional
Probab=31.95 E-value=7e+02 Score=27.11 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=30.6
Q ss_pred CcEEEEEcC--CCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPY--PGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~--~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
..|++.+++ ++.|=..-...||..|+. .|++|.++-..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~--~g~rvLlID~D 564 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQ--TNKRVLLIDCD 564 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHh--CCCcEEEEeCC
Confidence 446666555 677899999999999999 99999998643
No 372
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=31.95 E-value=2.4e+02 Score=26.68 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=33.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
+..|+|...++.|=..-+..|+..|.+ +|+.|.++.....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~--~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRR--RGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCC
Confidence 445677777899999999999999999 9999999886643
No 373
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=31.94 E-value=1.2e+02 Score=26.63 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCC-CeEEEecchH
Q 012096 99 APFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNI-PVASFWSMSA 146 (471)
Q Consensus 99 ~~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgI-P~v~~~~~~~ 146 (471)
...+++-+++.+++.+||+||+=.-. ..|..++..||+ |..++-+...
T Consensus 14 ~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y 64 (192)
T COG2236 14 RLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHY 64 (192)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEe
Confidence 33455566666555789999876544 678889999998 6666544443
No 374
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=31.77 E-value=94 Score=27.80 Aligned_cols=40 Identities=13% Similarity=-0.110 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+..||++.+.++..|-....=++..|.. +|++|+++...-
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~--~G~~Vi~LG~~v 126 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSN--NGYEVIDLGVMV 126 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHh--CCCEEEECCCCC
Confidence 4568999999999999999999999999 999999999753
No 375
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=31.70 E-value=81 Score=29.27 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred eEEEEEeCCCcCCCHH-HHHHHHHHHHh--CCCcEEEEEcCC
Q 012096 284 SVLYVSLGSLWSVSSV-QMDEIVAGVRN--SGVRFFWVSRGD 322 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~-~~~~~~~al~~--~~~~vi~~~~~~ 322 (471)
.+|++||||....... .+..+.+.+++ .++.|.|++...
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 4899999999875443 67777777766 368899987543
No 376
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=31.68 E-value=64 Score=28.41 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=24.5
Q ss_pred CceEEE-EcCch-hhHHHHHhhcCCCeEEEecch
Q 012096 114 VVSAII-VDTFL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 114 ~~D~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
.||+|| +|+.. .-+..=|.++|||+|.++-+.
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 599887 56555 567778999999999986544
No 377
>PLN02735 carbamoyl-phosphate synthase
Probab=31.66 E-value=3.7e+02 Score=30.92 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCCc--cCh----HHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 10 GRMCHIVALPYPGR--GHI----NPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 10 ~~~~~il~~~~~~~--GH~----~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.+++||+++..+.. |+. +....++++|++ .|++|..+.+..
T Consensus 21 ~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke--~G~~Vi~vd~np 67 (1102)
T PLN02735 21 TDLKKIMILGAGPIVIGQACEFDYSGTQACKALKE--EGYEVVLINSNP 67 (1102)
T ss_pred cCCCEEEEECCCccccccceeecchHHHHHHHHHH--cCCEEEEEeCCc
Confidence 34578999988752 433 557899999999 999999988654
No 378
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=31.59 E-value=1.4e+02 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.166 Sum_probs=29.6
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 16 VALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 16 l~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+=++.++.|-.--.+.||++|++ ||..+-+++-..
T Consensus 53 GNltvGGtGKTP~vi~la~~l~~--rG~~~gvvSRGY 87 (336)
T COG1663 53 GNLTVGGTGKTPVVIWLAEALQA--RGVRVGVVSRGY 87 (336)
T ss_pred ccEEECCCCcCHHHHHHHHHHHh--cCCeeEEEecCc
Confidence 34555888999999999999999 999999988643
No 379
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.58 E-value=43 Score=32.48 Aligned_cols=46 Identities=20% Similarity=0.091 Sum_probs=32.5
Q ss_pred cccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC-ccchhhhcC
Q 012096 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT-EEWLSFIGS 59 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~-~~~~~~~~~ 59 (471)
|...++||||.|+..+..|+ .+|..|.+ .|+ |++++. +...+.+..
T Consensus 1 ~~~~~~~mkI~IiGaGa~G~-----alA~~La~--~g~-v~l~~~~~~~~~~i~~ 47 (341)
T PRK12439 1 MAAAKREPKVVVLGGGSWGT-----TVASICAR--RGP-TLQWVRSAETADDIND 47 (341)
T ss_pred CccccCCCeEEEECCCHHHH-----HHHHHHHH--CCC-EEEEeCCHHHHHHHHh
Confidence 67788899999999999886 46777888 885 555553 333344443
No 380
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=31.55 E-value=4.8e+02 Score=25.12 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=36.4
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCC
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIP 77 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~ 77 (471)
++|+.+ -.|...-.+..++..++ +|..|..+|.......... ..+.....+|.+..
T Consensus 81 lvI~iS-~SG~T~e~~~a~~~a~~--~ga~vIaIT~~~~L~~~a~----~~~~~~i~ip~~~~ 136 (337)
T PRK08674 81 LVIAVS-YSGNTEETLSAVEQALK--RGAKIIAITSGGKLKEMAK----EHGLPVIIVPGGYQ 136 (337)
T ss_pred EEEEEc-CCCCCHHHHHHHHHHHH--CCCeEEEECCCchHHHHHH----hcCCeEEEeCCCCc
Confidence 444433 55888889999999999 9999988886432222111 11556777775553
No 381
>PRK04940 hypothetical protein; Provisional
Probab=31.37 E-value=1.2e+02 Score=26.39 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=25.9
Q ss_pred CceEEEEcCch-hhHHHHHhhcCCCeEEEecch
Q 012096 114 VVSAIIVDTFL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 114 ~~D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
+++++|..... .++..+|+++|+|.|.+-|..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 46788877766 889999999999999985543
No 382
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.11 E-value=81 Score=29.80 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=38.8
Q ss_pred hhhcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHH
Q 012096 346 LCHSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKR 421 (471)
Q Consensus 346 L~~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~ 421 (471)
...+++ +|+=||=||+..++.. ++|++.+-. - .+|..-+ ..++++.+++.+
T Consensus 62 ~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G------~lGFLt~---------~~~~~~~~~l~~ 116 (292)
T PRK01911 62 DGSADM--VISIGGDGTFLRTATYVGNSNIPILGINT--------G------RLGFLAT---------VSKEEIEETIDE 116 (292)
T ss_pred ccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEec--------C------CCCcccc---------cCHHHHHHHHHH
Confidence 334566 9999999999999873 678777632 1 1343333 377888899999
Q ss_pred HhcC
Q 012096 422 FMDL 425 (471)
Q Consensus 422 ~l~~ 425 (471)
++++
T Consensus 117 i~~g 120 (292)
T PRK01911 117 LLNG 120 (292)
T ss_pred HHcC
Confidence 8875
No 383
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=31.02 E-value=4.2e+02 Score=26.73 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|+||+|+.. |.+ .+.+++++++ .|++|..+.+.
T Consensus 2 ~kkili~g~---g~~--~~~~~~aa~~--lG~~vv~~~~~ 34 (449)
T TIGR00514 2 LDKILIANR---GEI--ALRILRACKE--LGIKTVAVHST 34 (449)
T ss_pred cceEEEeCC---CHH--HHHHHHHHHH--cCCeEEEEECh
Confidence 458888843 333 7889999999 99999998774
No 384
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=30.75 E-value=1e+02 Score=23.94 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|.||+++|..|.|--.-.-.+-+.+.+ +|.++.+-..
T Consensus 1 MkkILlvCg~G~STSlla~k~k~~~~e--~gi~~~i~a~ 37 (104)
T PRK09590 1 MKKALIICAAGMSSSMMAKKTTEYLKE--QGKDIEVDAI 37 (104)
T ss_pred CcEEEEECCCchHHHHHHHHHHHHHHH--CCCceEEEEe
Confidence 458999999887544444455555666 7877666443
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=30.62 E-value=4e+02 Score=25.55 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=33.4
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
..|+++..++.|=..-+..||..|+. +|++|.++....+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCcc
Confidence 45677777799999999999999999 9999999987654
No 386
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.35 E-value=1.6e+02 Score=24.96 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=61.4
Q ss_pred chHH-hhhhcccceeeccCC---cchHHHHHHcCCceecccc-cccccchhhhhhhhhcceeeeecCCCCCCCccCHHHH
Q 012096 341 DQLE-VLCHSSIGGFWTHCG---LNSTLEAAYAGVPMLTFPI-MMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEI 415 (471)
Q Consensus 341 pq~~-lL~~~~~~~~IthgG---~~s~~eal~~GvP~v~~P~-~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l 415 (471)
+|.. |-.||++..-+--.| .-|+.|-..+|.=-+.==- ..=+..|+++.+ ++|.=.++.. ...+.++|
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~-rFgfPfI~aV------kg~~k~~I 136 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVE-RFGFPFIIAV------KGNTKDTI 136 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHH-hcCCceEEee------cCCCHHHH
Confidence 3444 336676621121112 2477777877765532111 112567999998 5588877776 33589999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 012096 416 TELVKRFMDLNNDERKAMSKRAREVQEICQ 445 (471)
Q Consensus 416 ~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~ 445 (471)
.++..+-|+|+++ .+++..+.++.+..+
T Consensus 137 l~a~~~Rl~n~~e--~E~~tAl~eI~rIA~ 164 (176)
T COG3195 137 LAAFERRLDNDRE--QEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHhcccHH--HHHHHHHHHHHHHHH
Confidence 9999999988655 778888877776654
No 387
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.16 E-value=3.4e+02 Score=23.00 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=61.5
Q ss_pred EEEcCCCccChHHHH-HHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCC----chhhh-----hc
Q 012096 16 VALPYPGRGHINPMM-NLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPS----ELVRA-----RD 85 (471)
Q Consensus 16 l~~~~~~~GH~~p~l-~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~----~~~~~-----~~ 85 (471)
+.+.+...+.+..++ .+|++|+. +|++|.=++.......-.. ...+....++++..- +.... -|
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~--~G~rv~G~vQ~~~~~~~~~----~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD 75 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRA--RGVRVAGLVQRNTADGDGG----RCDMDLRDLPSGRRIRISQDLGPGSRGCRLD 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccCCCCCC----ccceEEEECCCCCEEEEeeccCCCCcccccC
Confidence 445556556776654 57899999 9999988876542211111 224566666543311 11110 12
Q ss_pred HHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch---------hhHHHHHhhcCCCeEEEecch
Q 012096 86 FLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL---------AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~---------~~~~~~A~~lgIP~v~~~~~~ 145 (471)
...+-.. ...+...+. .++|++|+.-|. -....-|-..|||+++..+..
T Consensus 76 ~~~La~A--------~~~l~~al~---~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 76 PGALAEA--------SAALRRALA---EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHHH--------HHHHHHHHh---cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 2222111 222333344 269999998775 112234666799999965543
No 388
>PRK11914 diacylglycerol kinase; Reviewed
Probab=30.15 E-value=1.2e+02 Score=28.83 Aligned_cols=81 Identities=11% Similarity=0.053 Sum_probs=45.6
Q ss_pred EEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHH
Q 012096 285 VLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTL 364 (471)
Q Consensus 285 ~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~ 364 (471)
.|.++--|......+.+..+.+.+++.+..+............ ..+ ........++ +|.-||=||+.
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~----------~~a-~~~~~~~~d~--vvv~GGDGTi~ 78 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDAR----------HLV-AAALAKGTDA--LVVVGGDGVIS 78 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHH----------HHH-HHHHhcCCCE--EEEECCchHHH
Confidence 3444444433333455667788888877765443322110000 000 0111222344 99999999999
Q ss_pred HHH----HcCCceecccc
Q 012096 365 EAA----YAGVPMLTFPI 378 (471)
Q Consensus 365 eal----~~GvP~v~~P~ 378 (471)
|++ ..++|+-++|.
T Consensus 79 evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 79 NALQVLAGTDIPLGIIPA 96 (306)
T ss_pred HHhHHhccCCCcEEEEeC
Confidence 997 34789999995
No 389
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.10 E-value=1.1e+02 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=22.7
Q ss_pred CceEEEEcCch--hhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFL--AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~--~~~~~~A~~lgIP~v~~ 141 (471)
++|+|++-... +.+..+|..+|+|++..
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 69999854333 77888999999999996
No 390
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=30.05 E-value=2.7e+02 Score=24.91 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHH
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFV 90 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~ 90 (471)
....+.|.|+... ....++..++ +||+|.+-.|.+.... ...+ |..+.... ........+
T Consensus 21 ~pvT~ai~P~~~~-----~~~~a~~a~~--~G~EvllhlPMep~~~-~~~g-----------p~~L~~~~-~~~~i~~~l 80 (213)
T PF04748_consen 21 FPVTFAILPYAPY-----SREWAERARA--AGHEVLLHLPMEPKGY-KDPG-----------PGALLTGM-SEEEIRKRL 80 (213)
T ss_dssp TTCEEEEETTSTT-----HHHHHHHHHH--CT-EEEEEEEE--TTT-T--------------TT-B-TTS--HHHHHHHH
T ss_pred CCeEEEECCCCCC-----hHHHHHHHHH--cCCEEEEeCCCCCCCC-CCcc-----------cccccCCC-CHHHHHHHH
Confidence 3456777776543 3456777788 9999999998654442 1211 11111111 111222222
Q ss_pred HHHHH-----------------hchHHHHHHHHHhhhcCCCceEEEEcCch---hhHHHHHhhcCCCeEEE
Q 012096 91 ESVST-----------------KMEAPFEKVLDFLQVEAPVVSAIIVDTFL---AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 91 ~~~~~-----------------~~~~~~~~ll~~l~~~~~~~D~vI~D~~~---~~~~~~A~~lgIP~v~~ 141 (471)
..... .-...++.+++.+++ -.+.++|... ..+..+|..+|+|++.-
T Consensus 81 ~~al~~vp~a~GvnNhmGS~~T~~~~~m~~vl~~l~~----~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 81 EAALARVPGAVGVNNHMGSRFTSDREAMRWVLEVLKE----RGLFFVDSRTTPRSVAPQVAKELGVPAARR 147 (213)
T ss_dssp HHHHCCSTT-SEEEEEE-CCHHC-HHHHHHHHHHHHH----TT-EEEE-S--TT-SHHHHHHHCT--EEE-
T ss_pred HHHHHHCCCcEEEecCCCccccCCHHHHHHHHHHHHH----cCCEEEeCCCCcccHHHHHHHHcCCCEEee
Confidence 22222 123346778888874 6888888766 56788999999999983
No 391
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=30.03 E-value=1e+02 Score=29.27 Aligned_cols=34 Identities=26% Similarity=0.216 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
||||+|+..+.. .....++|.+ .||+|.-+.+..
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~--~~~eivaV~Tqp 34 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIE--AGHEIVAVVTQP 34 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHh--CCCceEEEEeCC
Confidence 679999988764 3556688888 889988777644
No 392
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.94 E-value=1.1e+02 Score=25.14 Aligned_cols=40 Identities=10% Similarity=-0.182 Sum_probs=35.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
.+|++.+..+-+|-.----++..|.+ .|++|.........
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~--~GfeVi~LG~~v~~ 41 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTN--AGFNVVNLGVLSPQ 41 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHH--CCCEEEECCCCCCH
Confidence 47999999999999999999999999 99999999875443
No 393
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=29.80 E-value=1.4e+02 Score=30.76 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=32.9
Q ss_pred cEEEEEcCC---CccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 13 CHIVALPYP---GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 13 ~~il~~~~~---~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
+|++|++++ +.|-=.-.-+|+..|+. ||++|+.+=-..+...
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~--~g~~v~~~K~DpYlN~ 45 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKA--RGLKVTIIKIDPYINI 45 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHh--CCCceEEEeecccccC
Confidence 378888887 44566778899999999 9999999887665543
No 394
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=29.60 E-value=84 Score=33.09 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=21.9
Q ss_pred cceeeccCCcc------hHHHHHHcCCceeccc
Q 012096 351 IGGFWTHCGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 351 ~~~~IthgG~~------s~~eal~~GvP~v~~P 377 (471)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488888744 8899999999999984
No 395
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=29.46 E-value=83 Score=28.85 Aligned_cols=105 Identities=8% Similarity=0.017 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCc--hhhhhcHHHHHHHHHHhchHHHHHHHH
Q 012096 29 MMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSE--LVRARDFLAFVESVSTKMEAPFEKVLD 106 (471)
Q Consensus 29 ~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~ 106 (471)
+-..++.+.+ .|-+|.+.+...+...+..... .+.+-+.-+|..-... .+..-.....+.+.-......=+.+++
T Consensus 117 ~~ea~~~~~~--~~~rVflt~G~~~l~~f~~~~~-~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~ 193 (257)
T COG2099 117 IEEAAEAAKQ--LGRRVFLTTGRQNLAHFVAADA-HSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLE 193 (257)
T ss_pred HHHHHHHHhc--cCCcEEEecCccchHHHhcCcc-cceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHH
Confidence 3456777777 7777877777777776665432 2245555555221100 000000001110000011122344677
Q ss_pred HhhhcCCCceEEEEcCch-----hhHHHHHhhcCCCeEEE
Q 012096 107 FLQVEAPVVSAIIVDTFL-----AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 107 ~l~~~~~~~D~vI~D~~~-----~~~~~~A~~lgIP~v~~ 141 (471)
+. +.|+||+-... ..=..+|..+|||+|++
T Consensus 194 q~-----~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 194 QY-----RIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred Hh-----CCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 75 59999976544 23357899999999997
No 396
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=29.31 E-value=5.1e+02 Score=24.70 Aligned_cols=115 Identities=10% Similarity=0.036 Sum_probs=60.3
Q ss_pred EEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHh
Q 012096 17 ALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTK 96 (471)
Q Consensus 17 ~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~ 96 (471)
++.....|...-.+..++..++ +|..|..+|.........+. .+.....+|.+.........-+..........
T Consensus 70 vI~iS~SG~t~e~~~a~~~A~~--~g~~ii~iT~~g~L~~~a~~----~~~~~i~vP~~~~~R~s~~~~~~~~l~~l~~~ 143 (308)
T TIGR02128 70 LIAVSYSGNTEETLSAVEEAKK--KGAKVIAITSGGRLEEMAKE----RGLDVIKIPKGLQPRAAFPYLLTPLILMLIKP 143 (308)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH--cCCEEEEECCCcHHHHHHHh----cCCeEEEcCCCCCCeeeHHHHHHHHHHHHHHH
Confidence 3334444666667777888888 99999888864322222111 15677788877653222211111222222222
Q ss_pred chHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcC--CCeEEEecc
Q 012096 97 MEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRN--IPVASFWSM 144 (471)
Q Consensus 97 ~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lg--IP~v~~~~~ 144 (471)
+...+++....+. .|| .+.+...+-.+|..+. +|+++..+.
T Consensus 144 ~g~d~~~~~~~l~----~~~---~~~~~n~Ak~LA~~l~~~~pvi~~~~~ 186 (308)
T TIGR02128 144 LGIDIEEAELLEG----GLD---TPKLKALAKRLAEEIYNRIPVIYSSSP 186 (308)
T ss_pred cCCChHHHHHHhc----CCc---cccccCHHHHHHHHhhCCCCEEEeCCc
Confidence 2223333333333 355 2444455666777764 888887643
No 397
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.31 E-value=86 Score=29.00 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
|+|.+..=||-|=..-.+.||.+|++ +|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~--~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAK--LGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHh--CCCeEEEEe
Confidence 56888866788999999999999999 999999873
No 398
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=29.08 E-value=98 Score=28.34 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=29.9
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|+.|+|... ||-|=..-.-+||..|++ .|++|..+=-
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~--~G~~VlaID~ 38 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR--LGESVLAIDL 38 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH--CCCcEEEEeC
Confidence 344555554 688999999999999999 9999988764
No 399
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.07 E-value=2.9e+02 Score=29.57 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=21.8
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEE-EEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFIT-FVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt-~~~~~ 51 (471)
|||+|+..+.. .+...++|.+ .||+|. ++|.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~--~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLA--AGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHH--CCCcEEEEEeCC
Confidence 57888865432 3445588888 899988 55544
No 400
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=28.84 E-value=1e+02 Score=29.30 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=66.4
Q ss_pred chhccccccCCCCeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEcCCCCccccccC---CCceEeeccc------
Q 012096 271 DNYFHWLDSQPDSSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCV---DRGIVVPWCD------ 341 (471)
Q Consensus 271 ~~~~~~l~~~~~~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~---~nv~v~~~~p------ 341 (471)
+.+.++++.-...-+-.-++||+++ -.++.+-++-|++.+.+.....+..-...+ +.+++-+|.+
T Consensus 5 ~~ileil~~Y~~~~i~Iat~gSHSa------L~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~dil~~~i 78 (361)
T COG1759 5 KEILEILENYDLEDITIATIGSHSA------LQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDILNEEI 78 (361)
T ss_pred HHHHHHHHhccccceEEEEeecchH------HHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHHhhHHH
Confidence 3455555554322266667777775 345667778888877776543322222222 4455556654
Q ss_pred hHHhhhhcccceeeccCCcchHH--H--HHHcCCceecccc---c-ccccchhhhhhhhhcceeeeec
Q 012096 342 QLEVLCHSSIGGFWTHCGLNSTL--E--AAYAGVPMLTFPI---M-MDQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 342 q~~lL~~~~~~~~IthgG~~s~~--e--al~~GvP~v~~P~---~-~DQ~~na~~v~~~lG~G~~l~~ 401 (471)
|..++..-.+ ||-||-..... + .-.+-|||.+-=. | .||..--.-++ ++|+.++.
T Consensus 79 qe~L~~~n~I--~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLe---kAgi~~P~ 141 (361)
T COG1759 79 QEELRELNAI--FIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLE---KAGLRIPK 141 (361)
T ss_pred HHHHHHcCeE--EecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHH---HcCCCCCc
Confidence 4557777777 88888653211 1 1123455544221 1 35655555566 67888776
No 401
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.81 E-value=70 Score=32.50 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
+++||++...++. -.+-...|++.|++ +|++|.++.++....++...
T Consensus 69 ~~k~IllgVtGsI-Aayka~~lvr~L~k--~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGI-AAYKALDLIRRLKE--RGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHH-HHHHHHHHHHHHHh--CcCEEEEEECcCHHHHhhHH
Confidence 3467777766653 35578999999999 99999999999888887654
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=28.79 E-value=88 Score=27.03 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGS 59 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~ 59 (471)
+...+++...+|.|=..=..++++++.+ .|+.|.|+...+..+.+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEHHHHHHHHHC
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeecCceeccccc
Confidence 3456888888888877778999999999 9999999998877666654
No 403
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=28.66 E-value=3.6e+02 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=23.9
Q ss_pred CCceEEEEcCchhhHHHHHhh-cCCCeEEEec
Q 012096 113 PVVSAIIVDTFLAWAVDVGNR-RNIPVASFWS 143 (471)
Q Consensus 113 ~~~D~vI~D~~~~~~~~~A~~-lgIP~v~~~~ 143 (471)
.++|.+|+..|.+.++..+++ +++|++-.+-
T Consensus 68 ~GvdaiiIaCf~DPgl~~~Re~~~~PviGi~e 99 (230)
T COG4126 68 QGVDAIIIACFSDPGLAAARERAAIPVIGICE 99 (230)
T ss_pred cCCcEEEEEecCChHHHHHHHHhCCCceehhH
Confidence 369999999888777766655 5899888643
No 404
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.52 E-value=91 Score=29.71 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=37.9
Q ss_pred hcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHh
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFM 423 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l 423 (471)
.+++ +|+=||=||+..++.. ++|++.+-. - .+|..-+ .+.+++.+++.+++
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G------~lGFLt~---------~~~~~~~~~l~~l~ 122 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------G------HLGFLTE---------AYLNQLDEAIDQVL 122 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C------CCccccc---------CCHHHHHHHHHHHH
Confidence 4555 9999999999999774 778877622 1 2333333 37788889998888
Q ss_pred cC
Q 012096 424 DL 425 (471)
Q Consensus 424 ~~ 425 (471)
++
T Consensus 123 ~g 124 (305)
T PRK02649 123 AG 124 (305)
T ss_pred cC
Confidence 75
No 405
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=28.47 E-value=69 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
+|||+|+..+..| ..+|..|.+ .||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~--~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAAS--KGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHH--CCCeEEEEeCC
Confidence 5689999887766 568899999 99999999874
No 406
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.41 E-value=4.7e+02 Score=24.64 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred cccCCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc--chhhhcCCCCCCCCeEEEecCCCCCCchhhh
Q 012096 6 MKATGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE--WLSFIGSGHGNHNNIRFETIPNVIPSELVRA 83 (471)
Q Consensus 6 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~--~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 83 (471)
+..+.+++||+++.++. |+-.-.+-=+..-.+ -+++|.++.+.. .....++. ++.+..++.....
T Consensus 83 l~~~~~~~ri~vl~Sg~-gsnl~al~~~~~~~~--~~~~i~~visn~~~~~~lA~~~-----gIp~~~~~~~~~~----- 149 (286)
T PRK06027 83 LLDSAERKRVVILVSKE-DHCLGDLLWRWRSGE--LPVEIAAVISNHDDLRSLVERF-----GIPFHHVPVTKET----- 149 (286)
T ss_pred EcccccCcEEEEEEcCC-CCCHHHHHHHHHcCC--CCcEEEEEEEcChhHHHHHHHh-----CCCEEEeccCccc-----
Q ss_pred hcHHHHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEEecc
Q 012096 84 RDFLAFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~ 144 (471)
....+..+.+++++.. +|+||+-.+. .....+-+.+.-..+-++++
T Consensus 150 ----------~~~~~~~~~~~l~~~~-----~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 ----------KAEAEARLLELIDEYQ-----PDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------cchhHHHHHHHHHHhC-----CCEEEEecchhhcCHHHHhhccCCceecCcc
No 407
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=28.37 E-value=85 Score=20.09 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 012096 411 TRDEITELVKRFMDLNNDERKAMSKRAREV 440 (471)
Q Consensus 411 ~~~~l~~~i~~~l~~~~~~~~~~~~~a~~l 440 (471)
++++|..||..+.++. -++++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~----~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK----MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS----S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC----CCHHHHHHHH
Confidence 5788999999988652 4666666654
No 408
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=28.26 E-value=1.2e+02 Score=27.50 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=37.5
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
|.+|+|+.=++-|--.-.-.++.+|++ .|++|..+.-.+-.+.
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~--~GkkVl~vGCDPKaDS 43 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAE--LGKKVLIVGCDPKADS 43 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHH--cCCeEEEEcCCCCcch
Confidence 458999999999999999999999999 9999999987655544
No 409
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=28.20 E-value=1.9e+02 Score=28.24 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHH-hcCCCcEEEEEECc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLV-SRNPNVFITFVVTE 51 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~-~~~rGh~Vt~~~~~ 51 (471)
.+|-.+..-..|...-+...|+.|. + .|..+.|-|.-
T Consensus 40 ~~le~v~~Dp~Sd~~~ya~~A~~Li~~--d~V~~ifGc~T 77 (363)
T PF13433_consen 40 RQLEPVIYDPASDPSTYAEKAEKLIRE--DGVRAIFGCYT 77 (363)
T ss_dssp B--EEEEE--TT-HHHHHHHHHHHHHH--S---EEEE--S
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHh--CCccEEEecch
Confidence 3677777777899999999999995 5 78888888854
No 410
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=28.06 E-value=1.3e+02 Score=24.83 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=29.5
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHhCCCcEEEEEc
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRNSGVRFFWVSR 320 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~~~~~vi~~~~ 320 (471)
..+|++++||-.....+.++.+++.+. .+.++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 349999999999888888898888874 3577777654
No 411
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=28.02 E-value=81 Score=27.14 Aligned_cols=29 Identities=21% Similarity=0.070 Sum_probs=20.5
Q ss_pred CceEEEEcCch-hh-HHHHHhhcCCCeEEEe
Q 012096 114 VVSAIIVDTFL-AW-AVDVGNRRNIPVASFW 142 (471)
Q Consensus 114 ~~D~vI~D~~~-~~-~~~~A~~lgIP~v~~~ 142 (471)
+||+||..... .. ....-++.|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 69999986544 22 4444577899998874
No 412
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=28.01 E-value=91 Score=30.04 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=24.2
Q ss_pred HHHHHHHhhhcCCCceEEEEcCchh-------hH---HHHHhhcCCCeEEE
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFLA-------WA---VDVGNRRNIPVASF 141 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~~-------~~---~~~A~~lgIP~v~~ 141 (471)
+.++++++ +||++|+.+.+. |+ ..+.++++||.|.-
T Consensus 72 i~~mv~~~-----~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 72 ILEMVKKL-----KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHhc-----CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 44455554 599999988651 22 23567899999983
No 413
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.98 E-value=2.8e+02 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.0
Q ss_pred cceeeccCCcc------hHHHHHHcCCceeccc
Q 012096 351 IGGFWTHCGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 351 ~~~~IthgG~~------s~~eal~~GvP~v~~P 377 (471)
.+++++|.|-| .+.||...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33488888754 7899999999999984
No 414
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=27.90 E-value=50 Score=30.24 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.8
Q ss_pred cChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 24 GHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 24 GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|=-.-+-+|+++|++ .||+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~--~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAK--QGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHH--TT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHh--cCCeEEEEEccc
Confidence 344557789999999 999999999864
No 415
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=27.86 E-value=3.9e+02 Score=25.85 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCc-EEEEEE
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNV-FITFVV 49 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh-~Vt~~~ 49 (471)
..||+++..++.| ..+|+.|+. .|+ +++++=
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~--aGvg~i~lvD 55 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVR--AGIGKLTIAD 55 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHH--cCCCEEEEEc
Confidence 3689999988876 678999999 998 555543
No 416
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.86 E-value=2.5e+02 Score=25.09 Aligned_cols=93 Identities=10% Similarity=-0.033 Sum_probs=54.5
Q ss_pred CccChHHHHH---HHHHHHhcCCCcEEEEEECccch-hhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhc
Q 012096 22 GRGHINPMMN---LCKLLVSRNPNVFITFVVTEEWL-SFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKM 97 (471)
Q Consensus 22 ~~GH~~p~l~---La~~L~~~~rGh~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~ 97 (471)
-.||+.+.+. +++-|+. +|++|.+++.-... +.+.... .....++.++.+..
T Consensus 35 HiGH~r~~v~~Dvl~R~lr~--~G~~V~~~~g~dd~g~ki~~~A------------------~~~g~~p~e~~~~~---- 90 (213)
T cd00672 35 HIGHARTYVVFDVLRRYLED--LGYKVRYVQNITDIDDKIIKRA------------------REEGLSWKEVADYY---- 90 (213)
T ss_pred ccccchhHHHHHHHHHHHHh--cCCeeEEEeecCCCCCHHHHHH------------------HHcCCCHHHHHHHH----
Confidence 4599988664 5788888 99999998863221 2222110 00112233333333
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEE
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVAS 140 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~ 140 (471)
...+++.++.+.-+ .||..+-..+..|++.+.+.+|-|+=+
T Consensus 91 ~~~f~~~~~~l~i~--~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 91 TKEFFEDMKALNVL--PPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHHHHHHHHHcCCC--CCCcceeehhHHHHHHHHHHcCCCccE
Confidence 33456666666532 347777667778888888888866544
No 417
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.79 E-value=91 Score=29.49 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=38.4
Q ss_pred hhhhcccceeeccCCcchHHHHHH----cCCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHH
Q 012096 345 VLCHSSIGGFWTHCGLNSTLEAAY----AGVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVK 420 (471)
Q Consensus 345 lL~~~~~~~~IthgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~ 420 (471)
+...+++ +|+=||=||+..++. .++|++.+-. - .+|..-+ +.++++.+++.
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~--------G------~lGFl~~---------~~~~~~~~~l~ 114 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR--------G------NLGFLTD---------LDPDNALQQLS 114 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC--------C------CCCcccc---------cCHHHHHHHHH
Confidence 3334566 999999999999975 3667766532 1 1243333 36788999999
Q ss_pred HHhcC
Q 012096 421 RFMDL 425 (471)
Q Consensus 421 ~~l~~ 425 (471)
+++++
T Consensus 115 ~i~~g 119 (292)
T PRK03378 115 DVLEG 119 (292)
T ss_pred HHHcC
Confidence 98875
No 418
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=27.67 E-value=72 Score=30.46 Aligned_cols=40 Identities=8% Similarity=-0.097 Sum_probs=31.1
Q ss_pred cEEEEEcCCCc---cChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGR---GHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~---GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|||+|+.-|-. -+..-..+|.++-++ |||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~--rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQK--RGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHH--cCCEEEEEehhheE
Confidence 47888776522 355668899999999 99999999987654
No 419
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=27.66 E-value=1.2e+02 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=30.3
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcE-EEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVF-ITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~-Vt~~~~~ 51 (471)
|.-|+|...|..|--.....|.++|++ +||+ +..+...
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~--~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKE--RGTKQSVRIIDD 39 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHh--hcccceEEEech
Confidence 345778888999999999999999999 9986 4444443
No 420
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=27.66 E-value=4e+02 Score=24.73 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVI 76 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 76 (471)
+|||+++.+++...-. ..+.+|.+ .|.++.++......+.... -+.+....+|.+.
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~--aG~~v~~v~~~~~~~~~~~----l~~~DgLvipGGf 58 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRR--LGVEPEYVHINDLAAERKS----VSDYDCLVIPGGF 58 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHH--CCCcEEEEeeccccccccc----hhhCCEEEECCCC
Confidence 4689999998876443 56799999 9999998876432111100 1256777778664
No 421
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=27.56 E-value=1e+02 Score=29.08 Aligned_cols=38 Identities=21% Similarity=0.110 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
||.+|.|+.=++-|=..-...||..|++ .|++|.++-.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~--~g~kVLliD~ 40 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE--MGQKILIVGC 40 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEec
Confidence 4556777766788999999999999999 9999999843
No 422
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.53 E-value=1.5e+02 Score=31.10 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=49.7
Q ss_pred eCCCcCCCH-HHHHHHHHHHHhCCCcEEEEEcCCC-Ccccccc--CCCceEeeccc-hHH-----hhhhc--ccceeecc
Q 012096 290 LGSLWSVSS-VQMDEIVAGVRNSGVRFFWVSRGDT-SWFKDGC--VDRGIVVPWCD-QLE-----VLCHS--SIGGFWTH 357 (471)
Q Consensus 290 ~GS~~~~~~-~~~~~~~~al~~~~~~vi~~~~~~~-~~~~~~~--~~nv~v~~~~p-q~~-----lL~~~--~~~~~Ith 357 (471)
.||...... ..-+.+++.|++.+++.|..+.++. ..+...+ .++++.+.-.. +.. -+++. ..+++++|
T Consensus 4 ~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t 83 (564)
T PRK08155 4 SGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMAC 83 (564)
T ss_pred CCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 344444333 3456688888888888888877653 1111111 11344332211 111 11111 23337888
Q ss_pred CCcc------hHHHHHHcCCceeccc
Q 012096 358 CGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 358 gG~~------s~~eal~~GvP~v~~P 377 (471)
.|-| ++.||...++|+|++.
T Consensus 84 ~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 84 SGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 7754 7899999999999985
No 423
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.50 E-value=2.1e+02 Score=21.72 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=24.1
Q ss_pred CceEEE--EcCch----hhHHHHHhhcCCCeEEEecchHHH
Q 012096 114 VVSAII--VDTFL----AWAVDVGNRRNIPVASFWSMSASL 148 (471)
Q Consensus 114 ~~D~vI--~D~~~----~~~~~~A~~lgIP~v~~~~~~~~~ 148 (471)
+.|+|| +|... ..+-..|++.++|++..-......
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 478885 55544 344567889999999987555543
No 424
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.48 E-value=71 Score=29.84 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=39.0
Q ss_pred chHHhhhhcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHH
Q 012096 341 DQLEVLCHSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEIT 416 (471)
Q Consensus 341 pq~~lL~~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~ 416 (471)
++.++...+++ +|+=||=||+..++.. ++|++.+-. . .+|..-+. +++++.
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~--------G------~lGFL~~~---------~~~~~~ 89 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINR--------G------NLGFLTDI---------DPKNAY 89 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC--------C------CCcccccC---------CHHHHH
Confidence 33444445666 9999999999988653 678776632 1 24444333 677788
Q ss_pred HHHHHHhc
Q 012096 417 ELVKRFMD 424 (471)
Q Consensus 417 ~~i~~~l~ 424 (471)
+.+.++++
T Consensus 90 ~~l~~~~~ 97 (272)
T PRK02231 90 EQLEACLE 97 (272)
T ss_pred HHHHHHHh
Confidence 88887776
No 425
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.20 E-value=99 Score=29.46 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=39.2
Q ss_pred hhcccceeeccCCcchHHHHHHc----CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHH
Q 012096 347 CHSSIGGFWTHCGLNSTLEAAYA----GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRF 422 (471)
Q Consensus 347 ~~~~~~~~IthgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~ 422 (471)
..+++ +|+=||=||+..|+.. ++|++.+.. - .+|..-+. .++++.+++.++
T Consensus 71 ~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~--------G------~lGFL~~~---------~~~~~~~~l~~i 125 (306)
T PRK03372 71 DGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL--------G------HVGFLAEA---------EAEDLDEAVERV 125 (306)
T ss_pred cCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec--------C------CCceeccC---------CHHHHHHHHHHH
Confidence 34566 9999999999999764 778877743 1 23444443 678888899888
Q ss_pred hcC
Q 012096 423 MDL 425 (471)
Q Consensus 423 l~~ 425 (471)
+++
T Consensus 126 ~~g 128 (306)
T PRK03372 126 VDR 128 (306)
T ss_pred HcC
Confidence 875
No 426
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.19 E-value=58 Score=32.82 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
||||+|+..+.-|+ ..|++|++++.+++|+++....
T Consensus 1 m~~VVIIGgG~aG~-----~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 1 MPKIIVVGAVAGGA-----TCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CCeEEEECCcHHHH-----HHHHHHHhhCCCCCEEEEECCC
Confidence 67899998887665 5667777643589999998764
No 427
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=27.14 E-value=82 Score=27.95 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=24.4
Q ss_pred CceEEE-EcCch-hhHHHHHhhcCCCeEEEecch
Q 012096 114 VVSAII-VDTFL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 114 ~~D~vI-~D~~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
.||+|| +|... .-+..=|.+++||+|.++-+.
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn 147 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTD 147 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCC
Confidence 499887 56555 566777999999999986544
No 428
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.11 E-value=2.2e+02 Score=26.43 Aligned_cols=99 Identities=8% Similarity=0.118 Sum_probs=55.0
Q ss_pred EEEEEcCCCcc----ChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHH
Q 012096 14 HIVALPYPGRG----HINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAF 89 (471)
Q Consensus 14 ~il~~~~~~~G----H~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ 89 (471)
.|++.++.+.. ...-+..|++.|.+ +|++|.+++.++..+..+.... .+. -+...
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~--~~~~ivl~g~~~e~~~~~~i~~---~~~---~~~~~------------- 181 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLA--RGARVVLTGGPAERELAEEIAA---ALG---GPRVV------------- 181 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHH--CCCEEEEEechhhHHHHHHHHH---hcC---CCccc-------------
Confidence 35555544322 23358899999999 8999998887654443322100 000 00000
Q ss_pred HHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEec
Q 012096 90 VESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~ 143 (471)
.+ .-...+.++..-++ +-|++|+--. ....+|..+|+|++.+..
T Consensus 182 --~~--~~~~~l~e~~~li~----~~~l~I~~Ds--g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 182 --NL--AGKTSLRELAALLA----RADLVVTNDS--GPMHLAAALGTPTVALFG 225 (279)
T ss_pred --cC--cCCCCHHHHHHHHH----hCCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 00 00011334444444 4899997532 466788899999999754
No 429
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=26.68 E-value=2e+02 Score=28.28 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEcCCC
Q 012096 297 SSVQMDEIVAGVRNSGVRFFWVSRGDT 323 (471)
Q Consensus 297 ~~~~~~~~~~al~~~~~~vi~~~~~~~ 323 (471)
-+.++..++++|.+.|++|...+..+.
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCCC
Confidence 356788899999999999888776553
No 430
>PRK06756 flavodoxin; Provisional
Probab=26.58 E-value=1.2e+02 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCccChHHH-HHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPM-MNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~-l~La~~L~~~~rGh~Vt~~~~ 50 (471)
||||+|+=+...||.--+ -.+++.|.+ +|++|.+.-.
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~--~g~~v~~~~~ 38 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRE--TENEIEVIDI 38 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhh--cCCeEEEeeh
Confidence 567877777788998875 456788888 9999987654
No 431
>CHL00067 rps2 ribosomal protein S2
Probab=26.54 E-value=3.9e+02 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=24.7
Q ss_pred CCceEEEE-cCch-hhHHHHHhhcCCCeEEEecchH
Q 012096 113 PVVSAIIV-DTFL-AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 113 ~~~D~vI~-D~~~-~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
..||+||+ |+.. ..+..=|.++|||+|.++-+..
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~ 195 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNC 195 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCC
Confidence 36999875 4443 4677779999999999865543
No 432
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=26.43 E-value=2.5e+02 Score=23.77 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012096 431 KAMSKRAREVQEICQEA 447 (471)
Q Consensus 431 ~~~~~~a~~l~~~~~~~ 447 (471)
+.++++.+..++.+++.
T Consensus 131 ~~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 131 PELAEKLKEYRENQKEE 147 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777777777664
No 433
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.37 E-value=5.2e+02 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhcCCCceEEEEcCch--hhHHHHHhhcCCCeEEEecchH
Q 012096 100 PFEKVLDFLQVEAPVVSAIIVDTFL--AWAVDVGNRRNIPVASFWSMSA 146 (471)
Q Consensus 100 ~~~~ll~~l~~~~~~~D~vI~D~~~--~~~~~~A~~lgIP~v~~~~~~~ 146 (471)
.+.++.+.++.. +..+|+++... -.+-.+|+..|+|.+.+.+...
T Consensus 205 ~l~~l~~~ik~~--~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~ 251 (266)
T cd01018 205 DLKRLIDLAKEK--GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAA 251 (266)
T ss_pred HHHHHHHHHHHc--CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHH
Confidence 455666666653 79999999876 3455789999999998876553
No 434
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=26.34 E-value=2.9e+02 Score=25.91 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCcEEEEEECccch
Q 012096 30 MNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 30 l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
.++|..+++ +|++|.++......
T Consensus 3 ~a~a~~~a~--~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAE--QGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHH--CCCeEEEEECCCCC
Confidence 467888999 99999999976443
No 435
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=26.33 E-value=3.1e+02 Score=24.82 Aligned_cols=32 Identities=6% Similarity=-0.112 Sum_probs=23.6
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|.+++++++. .--.++|++|.+ +|++|..+..
T Consensus 11 k~~lItG~~~---gIG~a~a~~l~~--~G~~vv~~~~ 42 (253)
T PRK08993 11 KVAVVTGCDT---GLGQGMALGLAE--AGCDIVGINI 42 (253)
T ss_pred CEEEEECCCc---hHHHHHHHHHHH--CCCEEEEecC
Confidence 5666666553 456788999999 9999987644
No 436
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=26.30 E-value=1.1e+02 Score=28.10 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=37.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFI 57 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~ 57 (471)
-+++...|+.|...-.++++...++ +|..|.+++..+..+.+
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~--~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAR--EGEPVLYVSTEESPEEL 66 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh--cCCcEEEEEecCCHHHH
Confidence 5788888999999999999999999 99999999988666544
No 437
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=26.24 E-value=1.3e+02 Score=24.33 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=26.3
Q ss_pred eEEEEEeCCCcCCCHHHHHHHHHHHHh-C-CCcEEEEEc
Q 012096 284 SVLYVSLGSLWSVSSVQMDEIVAGVRN-S-GVRFFWVSR 320 (471)
Q Consensus 284 ~~I~vs~GS~~~~~~~~~~~~~~al~~-~-~~~vi~~~~ 320 (471)
.++++++||........+..+.+.+++ . +..|-|.+-
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 489999999997445567777777754 3 356777653
No 438
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=26.18 E-value=1.6e+02 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=22.9
Q ss_pred CeEEEEEeCCCcCCCHHHHHHHHHHHHhCC
Q 012096 283 SSVLYVSLGSLWSVSSVQMDEIVAGVRNSG 312 (471)
Q Consensus 283 ~~~I~vs~GS~~~~~~~~~~~~~~al~~~~ 312 (471)
+..+|+++||-.......+...++.++..+
T Consensus 7 ~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 7 SALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 347999999998666667777777777654
No 439
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=25.95 E-value=3.8e+02 Score=22.17 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|++...++.|=...+..++..+.+ +|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~--~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRA--RGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEeC
Confidence 677777888999999999999999 99999988765
No 440
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.75 E-value=6.6e+02 Score=28.82 Aligned_cols=40 Identities=8% Similarity=-0.054 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCc--c----ChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 11 RMCHIVALPYPGR--G----HINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 11 ~~~~il~~~~~~~--G----H~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+++||+++..+.. | .=+-++.++++|++ .||+|.++....
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~--~G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKK--EGYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHH--cCCEEEEEeCCc
Confidence 5678988887642 3 23468889999999 999999888654
No 441
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=25.68 E-value=4.5e+02 Score=24.97 Aligned_cols=31 Identities=26% Similarity=0.179 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|||+|+..+. ..+...+.|.+ +||++..+.+
T Consensus 1 mkIvf~G~~~-----~a~~~L~~L~~--~~~~i~~Vvt 31 (309)
T PRK00005 1 MRIVFMGTPE-----FAVPSLKALLE--SGHEVVAVVT 31 (309)
T ss_pred CEEEEECCCH-----HHHHHHHHHHH--CCCcEEEEEC
Confidence 5788885543 45677889988 8999886665
No 442
>PRK08322 acetolactate synthase; Reviewed
Probab=25.61 E-value=1.4e+02 Score=31.12 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.0
Q ss_pred cceeeccCCcc------hHHHHHHcCCceeccc
Q 012096 351 IGGFWTHCGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 351 ~~~~IthgG~~------s~~eal~~GvP~v~~P 377 (471)
.+++++|.|-| ++.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 33488888754 8899999999999985
No 443
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=25.49 E-value=1.2e+02 Score=28.31 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|.+|+|+.=||-|=..-.+.||.+|++ +|++|.++=-
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~--~G~rVLliD~ 37 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAE--SGKKVLVVGC 37 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh--CCCEEEEEee
Confidence 456888866888999999999999999 9999888743
No 444
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.38 E-value=1.2e+02 Score=28.03 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|..|+|+.=||-|=..-...||..|++ +|++|.++=-
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~--~G~kVlliD~ 37 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAE--MGKKVMIVGC 37 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHh--CCCeEEEEEc
Confidence 345778766788999999999999999 9999998854
No 445
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=25.34 E-value=1.5e+02 Score=25.94 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=22.2
Q ss_pred CceEEEEcCch--hhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFL--AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~--~~~~~~A~~lgIP~v~~ 141 (471)
++|+|++-... +.+..+|..+|+|++..
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 69999844322 67788999999999996
No 446
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.30 E-value=7.7e+02 Score=28.24 Aligned_cols=39 Identities=8% Similarity=-0.074 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCc--cC----hHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGR--GH----INPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~--GH----~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
..||+++..+.. |+ =.-.++++++|++ .||+|.++....
T Consensus 554 ~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~--~G~~vI~v~~np 598 (1050)
T TIGR01369 554 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRE--LGYETIMINYNP 598 (1050)
T ss_pred CceEEEecCcccccccccccchHHHHHHHHHHh--CCCEEEEEecCC
Confidence 468988887643 43 2457899999999 999999887653
No 447
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.25 E-value=4e+02 Score=24.05 Aligned_cols=41 Identities=15% Similarity=-0.065 Sum_probs=34.0
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
-+++...|+.|-..-.+.++.+-.+ +|..+.|++.+...+.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALEEHPVQ 63 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEEEeeCCHHH
Confidence 4788888899999999998877667 8999999998765544
No 448
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=25.20 E-value=1.5e+02 Score=23.57 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=26.2
Q ss_pred cEEEEEcCCCccChHHHH---HHHHHHHhcCCCcEEEEEECcc
Q 012096 13 CHIVALPYPGRGHINPMM---NLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l---~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|||++++....|-...++ .|.++-++ +||++.+=+...
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~--~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQL--EKWGVKIETQGA 43 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 678777777666554444 45566667 899999877543
No 449
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=25.17 E-value=1.6e+02 Score=21.65 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhHhcCCCcHHHHHHHHHHHHhhc
Q 012096 412 RDEITELVKRFMDLNNDERKAMSKRAREVQEICQEAVAENGSSITNFDAFLNDISLAH 469 (471)
Q Consensus 412 ~~~l~~~i~~~l~~~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (471)
.+-|.++|+ +|.. .. .....|++.+....+.|.+..-++++++...+.+|
T Consensus 30 SEvvR~aLR-lle~-----~e--~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~~ 79 (80)
T PF03693_consen 30 SEVVREALR-LLEE-----RE--AKLEALREALQEGLESGESEPFDMDDILARARRKH 79 (80)
T ss_dssp HHHHHHHHH-HHHH-----HH--HHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH--
T ss_pred HHHHHHHHH-HHHH-----HH--HHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhhc
Confidence 344666665 5532 22 34566888888776667676678889988877765
No 450
>PRK13695 putative NTPase; Provisional
Probab=25.16 E-value=4.2e+02 Score=22.38 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=28.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
|||++...++.|=..-+..++..|.. .|+.+.-+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~--~G~~~~g~~~ 36 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKE--EGYKVGGFYT 36 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEc
Confidence 68999988888888877888999998 8988753433
No 451
>PRK13604 luxD acyl transferase; Provisional
Probab=25.13 E-value=1.4e+02 Score=28.45 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
++.+.++++.+..++-..+..+|+.|.+ +|+.|..+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~--~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSS--NGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHH--CCCEEEEec
Confidence 3446777788877777779999999999 999998764
No 452
>PRK13059 putative lipid kinase; Reviewed
Probab=24.98 E-value=2.2e+02 Score=26.90 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHH---H---cCCc
Q 012096 299 VQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAA---Y---AGVP 372 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal---~---~GvP 372 (471)
..+..+.+.+.+.+..+........... .. . ....-...++ +|.-||=||+.|++ . .++|
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~~~~~-~~----------~-~~~~~~~~d~--vi~~GGDGTv~evv~gl~~~~~~~~ 84 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISLEYDL-KN----------A-FKDIDESYKY--ILIAGGDGTVDNVVNAMKKLNIDLP 84 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccCcchH-HH----------H-HHHhhcCCCE--EEEECCccHHHHHHHHHHhcCCCCc
Confidence 4456677888888877554322111100 00 0 1111222344 99999999999884 2 3588
Q ss_pred eecccc
Q 012096 373 MLTFPI 378 (471)
Q Consensus 373 ~v~~P~ 378 (471)
+-++|.
T Consensus 85 lgviP~ 90 (295)
T PRK13059 85 IGILPV 90 (295)
T ss_pred EEEECC
Confidence 999996
No 453
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=24.84 E-value=2e+02 Score=25.15 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEEecchHH
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASFWSMSAS 147 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~~~~~~~ 147 (471)
+++++++... +..++|...+. ..+..+|+++++|.|.+-|....
T Consensus 49 l~~~i~~~~~---~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 49 LEQLIEELKP---ENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHhCCC---CCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 4455555542 12466655555 77888999999999998766544
No 454
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.75 E-value=5.3e+02 Score=24.69 Aligned_cols=37 Identities=5% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEec
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~ 143 (471)
+.++..-++ +-|++|+. ....+-+|..+|+|+|.++.
T Consensus 251 L~el~ali~----~a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 251 LPQLAALID----HARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHHHHH----hCCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 444444444 48999977 44577899999999999754
No 455
>PLN00016 RNA-binding protein; Provisional
Probab=24.64 E-value=93 Score=30.53 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
+++|+|+..-+.|+=.--..|++.|.+ +||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~--~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVK--AGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHH--CCCEEEEEecCC
Confidence 357887722222222334567899999 999999988643
No 456
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=24.59 E-value=1.6e+02 Score=24.25 Aligned_cols=43 Identities=9% Similarity=-0.094 Sum_probs=34.6
Q ss_pred EEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 16 VALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 16 l~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
.++.++..--+.|..-++...+. .|++|+++.+--....+.+.
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A--~G~EV~VF~TfwGL~~l~K~ 49 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAA--MGYEVTVFFTFWGLMALRKE 49 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHH--cCCeEEEEEeHHHHHHhhcc
Confidence 45556777889999999999999 99999999986666555554
No 457
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=24.59 E-value=77 Score=28.43 Aligned_cols=112 Identities=10% Similarity=0.015 Sum_probs=60.6
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEEEEECccch-hhhcCCCCCCC--CeEEEecCCCCCCchhhhhcHHHHHHHHHHhch
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL-SFIGSGHGNHN--NIRFETIPNVIPSELVRARDFLAFVESVSTKME 98 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~-~~~~~~~~~~~--~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (471)
+..|+...+.++.-++. +|=.+.|+++.... +.++.+...-. .+.-..++..+.......+.... . ..+.
T Consensus 90 T~~~Lr~A~~fVa~vA~--r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~---~--~~~~ 162 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAH--RGGIILFVGTNNGFKDLVERAARRAGGYSHNRKWLGGLLTNARELFGALVR---K--FLSL 162 (251)
T ss_pred HHHHHHHHHHHHHHHHh--cCCeEEEEecCcchHHHHHHHHHHhcCceeeeeeccceeecchhhcccccc---c--ccCC
Confidence 56889999999999999 99999999986544 44443321101 22223333222111111111111 0 0111
Q ss_pred HHHHHHHHHhhhcCCCceEEEEc-Cch-hhHHHHHhhcCCCeEEEecch
Q 012096 99 APFEKVLDFLQVEAPVVSAIIVD-TFL-AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 99 ~~~~~ll~~l~~~~~~~D~vI~D-~~~-~~~~~~A~~lgIP~v~~~~~~ 145 (471)
....-++..+ .+|+||+= ..- ..++.=|.+++||+|.+.-..
T Consensus 163 pd~~~f~~t~-----~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 163 PDALCFLPTL-----TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred CcceeecccC-----CcceeEecCcccccHHHHHHHHhCCCeEEEecCC
Confidence 1111123332 47988764 433 567778999999999975443
No 458
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.54 E-value=99 Score=30.92 Aligned_cols=33 Identities=9% Similarity=-0.113 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
++||.|+..+.. -+.+|..|++ +||+|+.+-..
T Consensus 3 ~~kI~VIGlG~~-----G~~~A~~La~--~G~~V~~~D~~ 35 (415)
T PRK11064 3 FETISVIGLGYI-----GLPTAAAFAS--RQKQVIGVDIN 35 (415)
T ss_pred ccEEEEECcchh-----hHHHHHHHHh--CCCEEEEEeCC
Confidence 578988865543 4678999999 99999988753
No 459
>PRK00170 azoreductase; Reviewed
Probab=24.54 E-value=1.4e+02 Score=26.05 Aligned_cols=37 Identities=5% Similarity=-0.058 Sum_probs=21.2
Q ss_pred CcEEEEEcC-CCc--cChHHHH-HHHHHHHhcCC--CcEEEEEEC
Q 012096 12 MCHIVALPY-PGR--GHINPMM-NLCKLLVSRNP--NVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~-~~~--GH~~p~l-~La~~L~~~~r--Gh~Vt~~~~ 50 (471)
||||+++.. |-. |...-++ .+.+.|.+ . ||+|+++--
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~--~~~~~~v~~~dL 43 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKE--AHPDDEVTVRDL 43 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHH--hCCCCeEEEEEC
Confidence 567655554 433 3333333 35567777 5 899887653
No 460
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=24.53 E-value=1.8e+02 Score=24.51 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
.+||+++. .+|-+-.-+++..|.. -|.+|++++|+.
T Consensus 2 gl~i~~vG---D~~~rv~~Sl~~~~~~--~g~~~~~~~P~~ 37 (158)
T PF00185_consen 2 GLKIAYVG---DGHNRVAHSLIELLAK--FGMEVVLIAPEG 37 (158)
T ss_dssp TEEEEEES---STTSHHHHHHHHHHHH--TTSEEEEESSGG
T ss_pred CCEEEEEC---CCCChHHHHHHHHHHH--cCCEEEEECCCc
Confidence 46788776 3888999999999999 999999999876
No 461
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.37 E-value=2.2e+02 Score=26.67 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHHc-----CCc
Q 012096 298 SVQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAYA-----GVP 372 (471)
Q Consensus 298 ~~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~~-----GvP 372 (471)
...+..+...+.+.+..+.+........... .+. ...-..+++ +|.-||=||+.|++.. ..|
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~----------~~~-~~~~~~~d~--ivv~GGDGTl~~v~~~l~~~~~~~ 84 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEKGDAAR----------YVE-EARKFGVDT--VIAGGGDGTINEVVNALIQLDDIP 84 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCcccHHH----------HHH-HHHhcCCCE--EEEECCCChHHHHHHHHhcCCCCC
Confidence 4456667777888777654433221111100 011 111122344 9999999999997643 344
Q ss_pred eec-ccc
Q 012096 373 MLT-FPI 378 (471)
Q Consensus 373 ~v~-~P~ 378 (471)
.++ +|.
T Consensus 85 ~lgiiP~ 91 (293)
T TIGR00147 85 ALGILPL 91 (293)
T ss_pred cEEEEcC
Confidence 444 885
No 462
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=24.36 E-value=2.7e+02 Score=24.99 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCcc--ChHHHHHHHHHHHh
Q 012096 12 MCHIVALPYPGRG--HINPMMNLCKLLVS 38 (471)
Q Consensus 12 ~~~il~~~~~~~G--H~~p~l~La~~L~~ 38 (471)
|++|++..|..+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 5789888887554 58999999999965
No 463
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=24.35 E-value=2.7e+02 Score=28.94 Aligned_cols=41 Identities=10% Similarity=0.171 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecc
Q 012096 99 APFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 99 ~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 144 (471)
...+..+++++++ ++++||.|.. +..+|+++|++.|.+.+.
T Consensus 132 ~e~~~~~~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHC--CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 3567778888775 7999999963 457899999999998764
No 464
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.31 E-value=2.9e+02 Score=24.70 Aligned_cols=33 Identities=9% Similarity=-0.052 Sum_probs=23.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
|.+++++.+.| --.++|+.|.+ +|++|.++...
T Consensus 6 k~vlItGas~g---IG~~ia~~l~~--~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGANTG---LGQGIAVGLAE--AGADIVGAGRS 38 (248)
T ss_pred CEEEEECCCch---HHHHHHHHHHH--CCCEEEEEcCc
Confidence 34455554432 46889999999 99999887753
No 465
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=24.26 E-value=2.9e+02 Score=21.29 Aligned_cols=45 Identities=4% Similarity=-0.021 Sum_probs=30.1
Q ss_pred cEEEEEcC--CCccC-hHHHHHHHHHHHhcCCC---cEEEEEECccchhhhcC
Q 012096 13 CHIVALPY--PGRGH-INPMMNLCKLLVSRNPN---VFITFVVTEEWLSFIGS 59 (471)
Q Consensus 13 ~~il~~~~--~~~GH-~~p~l~La~~L~~~~rG---h~Vt~~~~~~~~~~~~~ 59 (471)
|+|+++.. |.... ..-.+.++..+.. .| |+|.++...+....+.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAA--MGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHH--TTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHH--cCCCCCcEEEEEEchHHHHHHh
Confidence 35555554 32233 6777888888888 89 99999998876665554
No 466
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=24.22 E-value=1.7e+02 Score=24.23 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCC
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPN 74 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 74 (471)
+...+|+|++..+.+|+.-.+.+.+.+++...-|.+.++.=.-....+........++.+..++-
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn~ 121 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFNF 121 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECCC
Confidence 34468999999999999999999999999666789998886544444443322223788888874
No 467
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=24.18 E-value=1.4e+02 Score=28.88 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=55.8
Q ss_pred EEEEEcCCCcc---ChH--HHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHH
Q 012096 14 HIVALPYPGRG---HIN--PMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLA 88 (471)
Q Consensus 14 ~il~~~~~~~G---H~~--p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 88 (471)
-|+|.|+.+.| +|- -+..|++.|.+ +|++|.+++.+.-.+..+.... . .+..... .
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~---~-----~~~~~~~---------~ 242 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILA---A-----LNTEQQA---------W 242 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHH---h-----ccccccc---------c
Confidence 46666654322 333 47899999988 8999988877654443322100 0 0000000 0
Q ss_pred HHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEec
Q 012096 89 FVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWS 143 (471)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~ 143 (471)
.+. ... ...+.++..-++ +-|++|+. ....+-+|..+|+|+|.++.
T Consensus 243 ~~~-l~g--~~sL~el~ali~----~a~l~I~n--DTGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 243 CRN-LAG--ETQLEQAVILIA----ACKAIVTN--DSGLMHVAAALNRPLVALYG 288 (348)
T ss_pred eee-ccC--CCCHHHHHHHHH----hCCEEEec--CChHHHHHHHhCCCEEEEEC
Confidence 000 000 012344444444 48899976 34477899999999999754
No 468
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.17 E-value=3.2e+02 Score=27.49 Aligned_cols=40 Identities=8% Similarity=0.137 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHH--hcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLV--SRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~--~~~rGh~Vt~~~~~~~~ 54 (471)
..|+|+..+|.|=..-...||..++ + .|++|.+++...+.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r 263 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYR 263 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccH
Confidence 3567777778899999999998887 5 68999999987654
No 469
>PHA02754 hypothetical protein; Provisional
Probab=24.10 E-value=1.2e+02 Score=20.44 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.6
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHh
Q 012096 419 VKRFMDLNNDERKAMSKRAREVQEICQEA 447 (471)
Q Consensus 419 i~~~l~~~~~~~~~~~~~a~~l~~~~~~~ 447 (471)
|.+++.+ +.|++..+++++.+.++
T Consensus 7 i~k~i~e-----K~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 7 IPKAIME-----KDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHH-----hHHHHHHHHHHHHHhhC
Confidence 4455556 89999999999998764
No 470
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.97 E-value=1.6e+02 Score=25.12 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhhhcCCCceEEEEcCch-hhHHHHHhhcCCCeEEE
Q 012096 98 EAPFEKVLDFLQVEAPVVSAIIVDTFL-AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~D~vI~D~~~-~~~~~~A~~lgIP~v~~ 141 (471)
.+.+++++.+++.. +.-++|+.... .-...+++++|||++.-
T Consensus 48 tpe~~~W~~e~k~~--gi~v~vvSNn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 48 TPELRAWLAELKEA--GIKVVVVSNNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred CHHHHHHHHHHHhc--CCEEEEEeCCCHHHHHhhhhhcCCceeec
Confidence 44567777777764 68888888766 56667899999999983
No 471
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.94 E-value=1e+02 Score=24.27 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCcc-ccccCCCceEe-------eccchHHhh---hhcccceeeccCCcchHHHHH
Q 012096 299 VQMDEIVAGVRNSGVRFFWVSRGDTSWF-KDGCVDRGIVV-------PWCDQLEVL---CHSSIGGFWTHCGLNSTLEAA 367 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~vi~~~~~~~~~~-~~~~~~nv~v~-------~~~pq~~lL---~~~~~~~~IthgG~~s~~eal 367 (471)
.....++.++++++++++.......... -....+..+.. .|+....|+ ....+ ...|+|+|-..|..
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~i~pGyg~lse~~ 89 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DAIHPGYGFLSENA 89 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SEEESTSSTTTTHH
T ss_pred HHHHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcC--cccccccchhHHHH
Confidence 3466789999999999998876543111 11223334444 366654444 33344 88999999887775
No 472
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=23.90 E-value=83 Score=28.04 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCCCceEEEEcCch---hhHHHHHhh----cCCCeEEE
Q 012096 101 FEKVLDFLQVEAPVVSAIIVDTFL---AWAVDVGNR----RNIPVASF 141 (471)
Q Consensus 101 ~~~ll~~l~~~~~~~D~vI~D~~~---~~~~~~A~~----lgIP~v~~ 141 (471)
+...++++.. .||+||+|.+. +-...+|-+ +++|.|-+
T Consensus 83 l~~~~~~l~~---~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 83 LLEALEKLKT---KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHhCCC---CCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 4445555553 69999999976 334445555 46898886
No 473
>PRK04328 hypothetical protein; Provisional
Probab=23.59 E-value=5.7e+02 Score=23.33 Aligned_cols=41 Identities=15% Similarity=-0.060 Sum_probs=33.3
Q ss_pred EEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccchhh
Q 012096 14 HIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSF 56 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~ 56 (471)
-+++...|+.|-..-.+.++.+-.+ +|+.+.+++.++..+.
T Consensus 25 ~ili~G~pGsGKT~l~~~fl~~~~~--~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 25 VVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGVYVALEEHPVQ 65 (249)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEEeeCCHHH
Confidence 4777888899999999998877667 7999999998765543
No 474
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=23.54 E-value=2.4e+02 Score=29.56 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=22.1
Q ss_pred cceeeccCCcc------hHHHHHHcCCceeccc
Q 012096 351 IGGFWTHCGLN------STLEAAYAGVPMLTFP 377 (471)
Q Consensus 351 ~~~~IthgG~~------s~~eal~~GvP~v~~P 377 (471)
.+++++|.|-| .+.||...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 33488998866 6889999999999984
No 475
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.48 E-value=1.6e+02 Score=26.76 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 9 TGRMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 9 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
+.++++|+++...+ .--..+++.|.+ +||+|+.++-.
T Consensus 14 ~~~~~~ilItGasG----~iG~~l~~~L~~--~g~~V~~~~R~ 50 (251)
T PLN00141 14 NVKTKTVFVAGATG----RTGKRIVEQLLA--KGFAVKAGVRD 50 (251)
T ss_pred cccCCeEEEECCCc----HHHHHHHHHHHh--CCCEEEEEecC
Confidence 34567887776543 334678899999 99999887643
No 476
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=23.46 E-value=1.3e+02 Score=29.97 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=29.5
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
|..|.|... ||.|=..-.+.||..|+. +|++|.++=
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~--~G~rVLlID 157 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLAL--QGYRVLAVD 157 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHh--cCCceEEEc
Confidence 344555554 788999999999999999 999999884
No 477
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.44 E-value=1.2e+02 Score=29.78 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCccChHHHHHHHHHHHhcCCC-------cEEEEEECcc
Q 012096 10 GRMCHIVALPYPGRGHINPMMNLCKLLVSRNPN-------VFITFVVTEE 52 (471)
Q Consensus 10 ~~~~~il~~~~~~~GH~~p~l~La~~L~~~~rG-------h~Vt~~~~~~ 52 (471)
.+++||.++..+++| .+||..|.+ .| |+|++++..+
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~--n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGE--NTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHh--cCCcccCCCCeEEEEEecc
Confidence 345799999999887 578999998 77 8999998765
No 478
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.42 E-value=6.1e+02 Score=23.64 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=33.0
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
-+++|+...+.|=..-+..|+..+.. +|+.|.+++....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ 114 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHS 114 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCC
Confidence 57888888888888888888999988 8999999987644
No 479
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=23.33 E-value=1.7e+02 Score=26.29 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=27.0
Q ss_pred CcEEEEEcCC----CccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 12 MCHIVALPYP----GRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 12 ~~~il~~~~~----~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|+||+++..+ ......=++.--..|.+ .|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~--aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDR--AGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 3477776641 11244556666789999 999999999854
No 480
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=23.30 E-value=1.4e+02 Score=26.54 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 11 RMCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 11 ~~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
..+||.+-..++-|-.+-|+.=|++|++ +|.+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~--~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKE--QGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHH--TT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEEec
Confidence 3578999999999999999999999999 99999997754
No 481
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=23.25 E-value=1.5e+02 Score=27.92 Aligned_cols=38 Identities=16% Similarity=-0.078 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCcc-Ch---HHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 11 RMCHIVALPYPGRG-HI---NPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 11 ~~~~il~~~~~~~G-H~---~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
+++||+++.++..+ |- .-..+++++|.+ .||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~--~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLIS--QGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHH--cCCEEEEEcC
Confidence 36789999887554 33 446678899999 9999987643
No 482
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=23.13 E-value=1.4e+02 Score=22.05 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=29.0
Q ss_pred EEEEEcCCCccChHHH-HHHHHHHHhcCCCcEEEEEECc
Q 012096 14 HIVALPYPGRGHINPM-MNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 14 ~il~~~~~~~GH~~p~-l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||+++|..|.|+-.-. -.+=+.+.+ +|.++......
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~--~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE--LGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH--TTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh--ccCceEEEEec
Confidence 6899999999888877 788888888 89777666554
No 483
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=23.04 E-value=3.2e+02 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=36.0
Q ss_pred CCCcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 10 GRMCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 10 ~~~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
++..|-.|+.+ ++-|-..=..+||-.|++ -+|.|.++++.+..
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~--~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAK--VRESVLIISTDPAH 59 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhc--cCCceEEeecCccc
Confidence 44567777777 678999999999999999 99999999987544
No 484
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=81 Score=32.01 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECcc
Q 012096 13 CHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTEE 52 (471)
Q Consensus 13 ~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~ 52 (471)
|||+|+..+--| |+-|.+|++ +||+||++=...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~--~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELAD--AGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHh--CCCceEEEeccC
Confidence 578887766443 778999999 999999986643
No 485
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=22.92 E-value=2.7e+02 Score=25.65 Aligned_cols=106 Identities=16% Similarity=0.049 Sum_probs=55.2
Q ss_pred EEEEEe-CCCcCCCHHHHHHHHHHHHh-CCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeecc--CCc
Q 012096 285 VLYVSL-GSLWSVSSVQMDEIVAGVRN-SGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTH--CGL 360 (471)
Q Consensus 285 ~I~vs~-GS~~~~~~~~~~~~~~al~~-~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~Ith--gG~ 360 (471)
+..+.. |.+.. .+++.+.. .+..+++.+..+.+..... ...-+..+-+..+++..+++-.-+|+ +..
T Consensus 4 V~IiG~~G~mG~-------~i~~~l~~~~~~elvav~d~~~~~~~~~--~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~ 74 (257)
T PRK00048 4 VAVAGASGRMGR-------ELIEAVEAAEDLELVAAVDRPGSPLVGQ--GALGVAITDDLEAVLADADVLIDFTTPEATL 74 (257)
T ss_pred EEEECCCCHHHH-------HHHHHHHhCCCCEEEEEEecCCcccccc--CCCCccccCCHHHhccCCCEEEECCCHHHHH
Confidence 455554 55552 34445544 4578888776544222111 11112223344556666776222232 234
Q ss_pred chHHHHHHcCCceecccccc--cccchhhhhhhhhcceeeeec
Q 012096 361 NSTLEAAYAGVPMLTFPIMM--DQVPNSKLIVEDWKIGWKVKK 401 (471)
Q Consensus 361 ~s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~lG~G~~l~~ 401 (471)
--+..|+.+|+|+|+-|... +|...-..+. . ++++.+..
T Consensus 75 ~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 75 ENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 56677899999999887543 3333223333 4 67777665
No 486
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.69 E-value=1.5e+02 Score=23.35 Aligned_cols=35 Identities=9% Similarity=-0.070 Sum_probs=30.2
Q ss_pred EEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEECc
Q 012096 15 IVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 15 il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
++..+.++..|-....-++..|.+ .|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~--~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRD--NGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHH--CCCEEEEcCCC
Confidence 567777888999999999999999 99999988653
No 487
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.68 E-value=1.4e+02 Score=27.52 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCCCCccccccCCCceEeeccchHHhhhhcccceeeccCCcchHHHHHH-cCCceeccc
Q 012096 299 VQMDEIVAGVRNSGVRFFWVSRGDTSWFKDGCVDRGIVVPWCDQLEVLCHSSIGGFWTHCGLNSTLEAAY-AGVPMLTFP 377 (471)
Q Consensus 299 ~~~~~~~~al~~~~~~vi~~~~~~~~~~~~~~~~nv~v~~~~pq~~lL~~~~~~~~IthgG~~s~~eal~-~GvP~v~~P 377 (471)
.....+.+-+.+.+..+.|..... +. -..+++ +|+=||=||+..|+. .++|++.+-
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~------------------~~---~~~~d~--vi~iGGDGT~L~a~~~~~~Pilgin 69 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEASA------------------SG---KVTADL--IIVVGGDGTVLKAAKKVGTPLVGFK 69 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecccc------------------cc---cCCCCE--EEEECCcHHHHHHHHHcCCCEEEEe
Confidence 445556667777777776642211 00 123455 999999999999977 466666552
Q ss_pred ccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 378 IMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 378 ~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.- .+|...+ ++.+++.+++.+++++
T Consensus 70 --------~G------~lGfl~~---------~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 70 --------AG------RLGFLSS---------YTLEEIDRFLEDLKNW 94 (256)
T ss_pred --------CC------CCccccc---------cCHHHHHHHHHHHHcC
Confidence 11 1343333 3778888888888765
No 488
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=22.60 E-value=6.7e+02 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCC--cc----ChHHHHHHHHHHHhcCCCcEEEEEECccc
Q 012096 11 RMCHIVALPYPG--RG----HINPMMNLCKLLVSRNPNVFITFVVTEEW 53 (471)
Q Consensus 11 ~~~~il~~~~~~--~G----H~~p~l~La~~L~~~~rGh~Vt~~~~~~~ 53 (471)
+..||+++..+. .| |-.....++++|++ .|++|.++.+...
T Consensus 5 ~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke--~G~~vi~v~~np~ 51 (1050)
T TIGR01369 5 DIKKILVIGSGPIVIGQAAEFDYSGSQACKALKE--EGYRVILVNSNPA 51 (1050)
T ss_pred CCcEEEEECCCcchhcchhcccchHHHHHHHHHH--cCCEEEEEecchh
Confidence 446899998875 24 34677899999999 9999999988653
No 489
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=22.42 E-value=2.2e+02 Score=27.46 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=58.6
Q ss_pred cEEEEEcCCCcc-----ChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHH
Q 012096 13 CHIVALPYPGRG-----HINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFL 87 (471)
Q Consensus 13 ~~il~~~~~~~G-----H~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~ 87 (471)
..|+|.|+.+.| -..-+..|++.|.+ +|.+|.++.++...+..+.... .+..... +
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~--~~~~Vvl~g~~~e~e~~~~i~~---~~~~~~~---l----------- 236 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIA--KGYQVVLFGGPDEEERAEEIAK---GLPNAVI---L----------- 236 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHH--CCCEEEEecChHHHHHHHHHHH---hcCCccc---c-----------
Confidence 467777773432 23358899999999 9999999888754444333211 0100000 0
Q ss_pred HHHHHHHHhchHHHHHHHHHhhhcCCCceEEEEcCchhhHHHHHhhcCCCeEEEecc
Q 012096 88 AFVESVSTKMEAPFEKVLDFLQVEAPVVSAIIVDTFLAWAVDVGNRRNIPVASFWSM 144 (471)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~~~~~~~~A~~lgIP~v~~~~~ 144 (471)
.....+.++..-+. .-|++|+- ......+|..+|.|+|.+...
T Consensus 237 --------~~k~sL~e~~~li~----~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 237 --------AGKTSLEELAALIA----GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred --------CCCCCHHHHHHHHh----cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 11112344444443 48888865 334677999999999998543
No 490
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=22.42 E-value=1.3e+02 Score=27.89 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccChHHHHHHHHHHHhcCCCcEEEEEE
Q 012096 12 MCHIVALPYPGRGHINPMMNLCKLLVSRNPNVFITFVV 49 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~l~La~~L~~~~rGh~Vt~~~ 49 (471)
|+.|.|+.=||-|=..-.+.||.+|++ +|++|.++=
T Consensus 1 m~~iav~~KGGVGKTT~~~nLA~~La~--~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYGKGGIGKSTTTQNTVAGLAE--MGKKVMVVG 36 (274)
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHH--CCCcEEEEe
Confidence 346777755788999999999999999 999999984
No 491
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.40 E-value=3e+02 Score=24.56 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCcEEEEEECccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHHHHHhchHHHHHHHHHh
Q 012096 29 MMNLCKLLVSRNPNVFITFVVTEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVESVSTKMEAPFEKVLDFL 108 (471)
Q Consensus 29 ~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l 108 (471)
-.+++++|.+ +||+|+.++-....+........ ++.....+ +. ..+.+.+.+
T Consensus 11 G~~v~~~L~~--~~~~V~~l~R~~~~~~~~~l~~~--g~~vv~~d--~~----------------------~~~~l~~al 62 (233)
T PF05368_consen 11 GRSVVRALLS--AGFSVRALVRDPSSDRAQQLQAL--GAEVVEAD--YD----------------------DPESLVAAL 62 (233)
T ss_dssp HHHHHHHHHH--TTGCEEEEESSSHHHHHHHHHHT--TTEEEES---TT-----------------------HHHHHHHH
T ss_pred HHHHHHHHHh--CCCCcEEEEeccchhhhhhhhcc--cceEeecc--cC----------------------CHHHHHHHH
Confidence 3788999999 99999999987654444321110 45554333 10 112233334
Q ss_pred hhcCCCceEEEEcCc------h---hhHHHHHhhcCCCeEEEecch
Q 012096 109 QVEAPVVSAIIVDTF------L---AWAVDVGNRRNIPVASFWSMS 145 (471)
Q Consensus 109 ~~~~~~~D~vI~D~~------~---~~~~~~A~~lgIP~v~~~~~~ 145 (471)
+ +.|.|++-.. . .....+|.+.||+.++++...
T Consensus 63 ~----g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~ 104 (233)
T PF05368_consen 63 K----GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFG 104 (233)
T ss_dssp T----TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEES
T ss_pred c----CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEec
Confidence 3 5777764433 1 234567888999999875544
No 492
>PRK06703 flavodoxin; Provisional
Probab=22.39 E-value=1.5e+02 Score=24.62 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccChHHH-HHHHHHHHhcCCCcEEEEEECc
Q 012096 12 MCHIVALPYPGRGHINPM-MNLCKLLVSRNPNVFITFVVTE 51 (471)
Q Consensus 12 ~~~il~~~~~~~GH~~p~-l~La~~L~~~~rGh~Vt~~~~~ 51 (471)
||+++|+=+...|+.--+ -.|++.|.+ .|++|.+.-..
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~--~g~~v~~~~~~ 39 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDA--FDHEVVLQEMD 39 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh--cCCceEEEehh
Confidence 567666666677887764 456788888 99999876543
No 493
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.32 E-value=1.9e+02 Score=22.87 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=30.4
Q ss_pred CccChHHHHHHHHHHHhcCCCcEEEEEECccchhhhcCC
Q 012096 22 GRGHINPMMNLCKLLVSRNPNVFITFVVTEEWLSFIGSG 60 (471)
Q Consensus 22 ~~GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~~~~~~~ 60 (471)
..|+...++.+++.+++ +|..|..+|...........
T Consensus 62 ~sg~~~~~~~~~~~ak~--~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 62 YSGETRELIELLRFAKE--RGAPVILITSNSESPLARLA 98 (131)
T ss_dssp SSSTTHHHHHHHHHHHH--TTSEEEEEESSTTSHHHHHS
T ss_pred ccccchhhhhhhHHHHh--cCCeEEEEeCCCCCchhhhC
Confidence 56888999999999999 99999999987666555544
No 494
>PRK09213 pur operon repressor; Provisional
Probab=22.26 E-value=1.8e+02 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=22.8
Q ss_pred CceEEEEcCch--hhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFL--AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~--~~~~~~A~~lgIP~v~~ 141 (471)
++|+|++=... +.+..+|..+|+|+++.
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~vp~viv 159 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIV 159 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 69999854433 77888999999999996
No 495
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=22.05 E-value=1.8e+02 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=22.8
Q ss_pred CceEEEEcCch--hhHHHHHhhcCCCeEEE
Q 012096 114 VVSAIIVDTFL--AWAVDVGNRRNIPVASF 141 (471)
Q Consensus 114 ~~D~vI~D~~~--~~~~~~A~~lgIP~v~~ 141 (471)
++|+|++-..- +.+..+|..+|+|+++.
T Consensus 128 ~iD~VvgvetkGIpLA~avA~~L~vp~viv 157 (268)
T TIGR01743 128 EIDAVMTVATKGIPLAYAVASVLNVPLVIV 157 (268)
T ss_pred CCCEEEEEccchHHHHHHHHHHHCCCEEEE
Confidence 69999854433 77888999999999996
No 496
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=22.02 E-value=84 Score=31.32 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=59.4
Q ss_pred EEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEE-CccchhhhcCCCCCCCCeEEEecCCCCCCchhhhhcHHHHHHH
Q 012096 15 IVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVV-TEEWLSFIGSGHGNHNNIRFETIPNVIPSELVRARDFLAFVES 92 (471)
Q Consensus 15 il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~-~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~ 92 (471)
|+|... -+.|-..-.+.|.++|++ ||++|.-+= .+++-+- .|...-.+.+. ..++.
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~--rg~~VqpfKvGPDYIDP-----------~~H~~atG~~s---------rNLD~ 60 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRR--RGLKVQPFKVGPDYIDP-----------GYHTAATGRPS---------RNLDS 60 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHh--cCCcccccccCCCccCc-----------hhhhHhhCCcc---------CCCch
Confidence 344333 466899999999999999 999986432 2221111 11111112211 11111
Q ss_pred HHHhchHHHHHHHHHhhhcCCCceEEEEcCc------------hhhHHHHHhhcCCCeEEEecchHHHHH
Q 012096 93 VSTKMEAPFEKVLDFLQVEAPVVSAIIVDTF------------LAWAVDVGNRRNIPVASFWSMSASLFS 150 (471)
Q Consensus 93 ~~~~~~~~~~~ll~~l~~~~~~~D~vI~D~~------------~~~~~~~A~~lgIP~v~~~~~~~~~~~ 150 (471)
+ ...++.++.++.+-.+ ..|+.|.+.. ....+.+|+.+|+|+|.+........+
T Consensus 61 ~-mm~~~~v~~~f~~~~~---~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S 126 (451)
T COG1797 61 W-MMGEEGVRALFARAAA---DADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRS 126 (451)
T ss_pred h-hcCHHHHHHHHHHhcC---CCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchhHH
Confidence 1 1222334444444432 3555554321 245778999999999998665554433
No 497
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.99 E-value=1.4e+02 Score=27.89 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=36.9
Q ss_pred hcccceeeccCCcchHHHHHHc-CCceecccccccccchhhhhhhhhcceeeeecCCCCCCCccCHHHHHHHHHHHhcC
Q 012096 348 HSSIGGFWTHCGLNSTLEAAYA-GVPMLTFPIMMDQVPNSKLIVEDWKIGWKVKKPEIGSESLVTRDEITELVKRFMDL 425 (471)
Q Consensus 348 ~~~~~~~IthgG~~s~~eal~~-GvP~v~~P~~~DQ~~na~~v~~~lG~G~~l~~~~~~~~~~~~~~~l~~~i~~~l~~ 425 (471)
.+++ +|+=||-||+..++.. ..|++.+ |.- .+|..-+ .+.+++.+++.+++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGI--------N~G------~lGFL~~---------~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGI--------NMG------GLGFLTE---------IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEE--------ECC------CCccCcc---------cCHHHHHHHHHHHHcC
Confidence 4566 9999999999999874 4565544 222 2333333 3788999999999875
No 498
>PRK13337 putative lipid kinase; Reviewed
Probab=21.97 E-value=2.4e+02 Score=26.68 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=21.5
Q ss_pred ceeeccCCcchHHHHHHc------CCceecccc
Q 012096 352 GGFWTHCGLNSTLEAAYA------GVPMLTFPI 378 (471)
Q Consensus 352 ~~~IthgG~~s~~eal~~------GvP~v~~P~ 378 (471)
..+|.-||=||+.|++.. ..|+-++|.
T Consensus 59 d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 59 DLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 349999999999999862 347788885
No 499
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.84 E-value=2e+02 Score=25.15 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=28.2
Q ss_pred CcEEEEEcC-CCccChHHHHHHHHHHHhcCCCcEEEEEEC
Q 012096 12 MCHIVALPY-PGRGHINPMMNLCKLLVSRNPNVFITFVVT 50 (471)
Q Consensus 12 ~~~il~~~~-~~~GH~~p~l~La~~L~~~~rGh~Vt~~~~ 50 (471)
+..|+|... ++.|=..-...||..|++ +|++|.++=.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~--~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQ--AGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHh--CCCeEEEEeC
Confidence 334444433 567888999999999999 9999988754
No 500
>PRK05246 glutathione synthetase; Provisional
Probab=21.80 E-value=1.4e+02 Score=28.52 Aligned_cols=40 Identities=3% Similarity=-0.100 Sum_probs=30.8
Q ss_pred cEEEEEcCCCc---cChHHHHHHHHHHHhcCCCcEEEEEECccch
Q 012096 13 CHIVALPYPGR---GHINPMMNLCKLLVSRNPNVFITFVVTEEWL 54 (471)
Q Consensus 13 ~~il~~~~~~~---GH~~p~l~La~~L~~~~rGh~Vt~~~~~~~~ 54 (471)
|||+|+.-|-. -......+|+++-++ +||+|.++++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~st~~l~~aa~~--~G~~v~~~~~~dl~ 44 (316)
T PRK05246 2 MKVAFQMDPIESINIKKDSTFAMMLEAQR--RGHELFYYEPDDLS 44 (316)
T ss_pred ceEEEEeCCHHHCCCCCChHHHHHHHHHH--cCCEEEEEehhhcE
Confidence 68888876532 244567889999999 99999999987544
Done!