BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012097
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 388 LMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNI 447
+ PV E L + QI+YYFS NL +D FL+ MD+QG++PI+LIA F RV+ LT+N+
Sbjct: 207 VYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNL 266
Query: 448 QLILDSLRTSTVVEV 462
LIL++L+ ST VE+
Sbjct: 267 NLILEALKDSTEVEI 281
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 50/75 (66%)
Query: 388 LMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNI 447
L V + L + QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I
Sbjct: 395 LYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDI 454
Query: 448 QLILDSLRTSTVVEV 462
LI +L+ S VVE+
Sbjct: 455 SLIFAALKDSKVVEI 469
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L + QI+YYFS NL +D FL+ MD G++PITLIASF RV+ LT++I LI +L+
Sbjct: 378 LKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIASFHRVQALTTDISLIFAALK 437
Query: 456 TSTVVEV 462
S VVE+
Sbjct: 438 DSKVVEM 444
>sp|Q9P6K0|YLA3_SCHPO Uncharacterized HTH La-type RNA-binding protein C1527.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1527.03 PE=1 SV=1
Length = 475
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 48/67 (71%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
+ A L Q++YYFS NL KD FL+ +MDD+G+VP+ +ASF R+K+ ++++ L+ + +
Sbjct: 325 VQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFNRIKSFSTDLNLLHAACK 384
Query: 456 TSTVVEV 462
S +++V
Sbjct: 385 ASDIIDV 391
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 48/68 (70%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
S+ + Q++YYFS NL D FL+ MD +G++P+TLIASF RV LT+++ +I++++
Sbjct: 728 SIKEAIKKQVEYYFSVDNLTGDFFLRRKMDPEGYIPVTLIASFHRVLALTTDVAVIVNAI 787
Query: 455 RTSTVVEV 462
+ S +E+
Sbjct: 788 KESDKLEL 795
>sp|Q9I7T7|Y1505_DROME La-related protein CG11505 OS=Drosophila melanogaster GN=CG11505
PE=1 SV=2
Length = 1531
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 391 VPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLI 450
+P L ML Q++YYFS NL D +L S MD +VPI +A F V+ LT++I LI
Sbjct: 263 IPLDKLKQMLATQLEYYFSRENLANDTYLLSQMDSDQYVPIYTVARFNLVRKLTNDINLI 322
Query: 451 LDSLRTSTVVEV 462
+ LR S V+V
Sbjct: 323 TEVLRESPNVQV 334
>sp|Q26457|LA_AEDAL La protein homolog OS=Aedes albopictus PE=1 SV=1
Length = 383
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNM-DDQGWVPITLIASFPRVKNLTSNIQLILDS 453
L A I Q++YYF DANL +D+FL+ + D+GWVP+ ++ +F R+K+L+ + ++I+D+
Sbjct: 42 KLEASTIRQLEYYFGDANLARDKFLQEQISKDEGWVPVDVLLTFKRLKSLSEDKKVIVDA 101
Query: 454 LRTST--VVEV 462
+ S ++EV
Sbjct: 102 IEKSDEGLIEV 112
>sp|P05455|LA_HUMAN Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2
Length = 408
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>sp|P10881|LA_BOVIN Lupus La protein homolog OS=Bos taurus GN=SSB PE=2 SV=2
Length = 404
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ ++ F R+ LT++ +I+++
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEA 71
Query: 454 LRTS 457
L S
Sbjct: 72 LSKS 75
>sp|P32067|LA_MOUSE Lupus La protein homolog OS=Mus musculus GN=Ssb PE=2 SV=1
Length = 415
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTS--TVVEV 462
L S ++EV
Sbjct: 72 LSKSKAKLMEV 82
>sp|P38656|LA_RAT Lupus La protein homolog OS=Rattus norvegicus GN=Ssb PE=2 SV=1
Length = 415
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 395 SLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILDS 453
+L A + HQI+YYF D NL +D+FLK + D+GWVP+ + F R+ LT++ +I+ +
Sbjct: 12 ALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQA 71
Query: 454 LRTST--VVEV 462
L S ++EV
Sbjct: 72 LSKSKANLMEV 82
>sp|Q05CL8|LARP7_MOUSE La-related protein 7 OS=Mus musculus GN=Larp7 PE=1 SV=2
Length = 570
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD+FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 28 VLADIAKQVDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 87
Query: 454 LRTSTVVEV 462
L++S+VVE+
Sbjct: 88 LKSSSVVEL 96
>sp|Q4R627|LARP7_MACFA La-related protein 7 OS=Macaca fascicularis GN=LARP7 PE=2 SV=1
Length = 581
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 34 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 93
Query: 454 LRTSTVVEV 462
LR+S VVE+
Sbjct: 94 LRSSAVVEL 102
>sp|Q4G0J3|LARP7_HUMAN La-related protein 7 OS=Homo sapiens GN=LARP7 PE=1 SV=1
Length = 582
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 34 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 93
Query: 454 LRTSTVVEV 462
LR+S VVE+
Sbjct: 94 LRSSAVVEL 102
>sp|Q8BWW4|LARP4_MOUSE La-related protein 4 OS=Mus musculus GN=Larp4 PE=1 SV=2
Length = 719
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLILDSLR 455
L L Q+++ FS NL KD +L S MD +VPI +A+ +K LT+N LIL+ LR
Sbjct: 115 LKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTNTDLILEVLR 174
Query: 456 TSTVVEV 462
+S +V+V
Sbjct: 175 SSPMVQV 181
>sp|Q5XI01|LARP7_RAT La-related protein 7 OS=Rattus norvegicus GN=Larp7 PE=1 SV=2
Length = 571
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
+ A + Q+D++F DANL KD FL+ ++ G+V I+L+ SF ++K LT++ +LI +
Sbjct: 29 VLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARA 88
Query: 454 LRTSTVVEV 462
L++S+VVE+
Sbjct: 89 LKSSSVVEL 97
>sp|Q7ZWE3|LARP7_DANRE La-related protein 7 OS=Danio rerio GN=larp7 PE=2 SV=1
Length = 555
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Query: 403 QIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDSLRTSTVV 460
Q++++F D NL KD F+KS ++ G++ I ++ +F R+KNLT++++LI +L+ ST+V
Sbjct: 49 QVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIV 108
Query: 461 EV 462
EV
Sbjct: 109 EV 110
>sp|Q9BRS8|LARP6_HUMAN La-related protein 6 OS=Homo sapiens GN=LARP6 PE=1 SV=1
Length = 491
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 392 PEPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQL 449
P+ L L+ QI++YFSD NL KD FL ++ + G+V + L+ SF +VK+LT + +
Sbjct: 88 PDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 450 ILDSLRTSTVVEV 462
+L+ S V+E+
Sbjct: 148 TAHALKYSVVLEL 160
>sp|Q28G87|LARP7_XENTR La-related protein 7 OS=Xenopus tropicalis GN=larp7 PE=2 SV=1
Length = 593
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSNMDD--QGWVPITLIASFPRVKNLTSNIQLILDS 453
L A + Q+D++F D NL KD FL+ ++ G++ I+L+ASF ++K +T++ +LI +
Sbjct: 36 LLADIAKQVDFWFGDVNLHKDRFLREQIEKTRDGYIDISLLASFNKMKKITTDSKLIARA 95
Query: 454 LRTSTVVEV 462
++ S+VVE+
Sbjct: 96 VKNSSVVEI 104
>sp|P25567|SRO9_YEAST RNA-binding protein SRO9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SRO9 PE=1 SV=2
Length = 434
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 381 FIPPAPVLMPVPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRV 440
F P PVLM + + QI+YYFS+ NL D +L+S + G+ P++LI+ F RV
Sbjct: 252 FYPVQPVLMAINN------IARQIEYYFSEENLTVDNYLRSKLSKDGFAPLSLISKFYRV 305
Query: 441 KNLT--SNIQLILDSLR 455
N++ + LIL +LR
Sbjct: 306 VNMSFGGDTNLILAALR 322
>sp|Q8BN59|LARP6_MOUSE La-related protein 6 OS=Mus musculus GN=Larp6 PE=1 SV=1
Length = 492
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 392 PEPSLAAMLIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQL 449
P+ L L+ QI++YFSD NL KD FL ++ + G+V + L+ SF +VK+LT + +
Sbjct: 88 PDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147
Query: 450 ILDSLRTSTVVEV 462
+L+ S +E+
Sbjct: 148 TAHALKYSVTLEL 160
>sp|P28049|LAB_XENLA Lupus La protein homolog B OS=Xenopus laevis GN=ssb-b PE=2 SV=1
Length = 427
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 396 LAAMLIHQIDYYFSDANLVKDEFLKSN-MDDQGWVPITLIASFPRVKNLTSNIQLILDSL 454
L + QI+YYF D NL +D+FLK + D GWVP+ + F R+ LT++ +IL +L
Sbjct: 12 LDTKICEQIEYYFGDHNLPRDKFLKQQVLLDNGWVPLETMIKFNRLSKLTTDFNIILQAL 71
Query: 455 RTS 457
+ S
Sbjct: 72 KKS 74
>sp|P40796|LA_DROME La protein homolog OS=Drosophila melanogaster GN=La PE=1 SV=2
Length = 390
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSNM--DDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+I Q++YYF DANL +D+FL+ + ++ GWVP++++ +F R+ +L++++ I+ +L S
Sbjct: 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
Query: 458 T--VVEV 462
+VE+
Sbjct: 114 EEGLVEI 120
>sp|Q71RC2|LARP4_HUMAN La-related protein 4 OS=Homo sapiens GN=LARP4 PE=1 SV=3
Length = 724
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 391 VPEPSLAAMLIHQIDYYFSDANLVKDEFLKSNMDDQGWVPITLIASFPRVKNLTSNIQLI 450
V L L Q+++ FS NL KD +L S MD ++PI +A+ +K LT++ LI
Sbjct: 114 VSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLI 173
Query: 451 LDSLRTSTVVEV 462
L+ LR+S +V+V
Sbjct: 174 LEVLRSSPMVQV 185
>sp|P28048|LAA_XENLA Lupus La protein homolog A OS=Xenopus laevis GN=ssb-a PE=2 SV=1
Length = 428
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 400 LIHQIDYYFSDANLVKDEFLKSN-MDDQGWVPITLIASFPRVKNLTSNIQLILDSLRTS 457
+ QI+YYF D NL +D+FLK + D GWVP+ + F R+ LT++ IL +L+ S
Sbjct: 17 ICEQIEYYFGDHNLPRDKFLKQQILLDDGWVPLETMIKFNRLSKLTTDFNTILQALKKS 75
>sp|P33399|LHP1_YEAST La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=LHP1 PE=1 SV=2
Length = 275
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 394 PSLAAMLIHQIDYYFSDANLVKDEFLKSNMD-DQGWVPITLIASFPRVKNLTSNIQLILD 452
P + + Q+++YFS+ N D FL++ + + GWVPI+ IA+F R+K + +++
Sbjct: 27 PEVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKYRP-VDKVIE 85
Query: 453 SLRTSTVVEV 462
+LR+S ++EV
Sbjct: 86 ALRSSEILEV 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,972,206
Number of Sequences: 539616
Number of extensions: 11161158
Number of successful extensions: 119050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 2502
Number of HSP's that attempted gapping in prelim test: 65694
Number of HSP's gapped (non-prelim): 28589
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)